Psyllid ID: psy10223
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | 2.2.26 [Sep-21-2011] | |||||||
| Q99PE8 | 652 | ATP-binding cassette sub- | yes | N/A | 0.825 | 0.766 | 0.295 | 5e-59 | |
| Q9H222 | 651 | ATP-binding cassette sub- | yes | N/A | 0.831 | 0.774 | 0.292 | 2e-58 | |
| Q99PE7 | 652 | ATP-binding cassette sub- | yes | N/A | 0.825 | 0.766 | 0.292 | 2e-57 | |
| P58428 | 694 | ATP-binding cassette sub- | no | N/A | 0.420 | 0.367 | 0.370 | 2e-45 | |
| Q9DBM0 | 673 | ATP-binding cassette sub- | no | N/A | 0.427 | 0.384 | 0.360 | 2e-45 | |
| Q9H221 | 673 | ATP-binding cassette sub- | no | N/A | 0.473 | 0.426 | 0.340 | 4e-45 | |
| Q9LFG8 | 739 | ABC transporter G family | yes | N/A | 0.389 | 0.319 | 0.349 | 9e-36 | |
| Q7XA72 | 672 | ABC transporter G family | no | N/A | 0.744 | 0.671 | 0.278 | 5e-35 | |
| Q9ZUT0 | 755 | ABC transporter G family | no | N/A | 0.466 | 0.374 | 0.304 | 2e-34 | |
| O80946 | 740 | ABC transporter G family | no | N/A | 0.387 | 0.317 | 0.334 | 4e-34 |
| >sp|Q99PE8|ABCG5_MOUSE ATP-binding cassette sub-family G member 5 OS=Mus musculus GN=Abcg5 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 229 bits (584), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 168/568 (29%), Positives = 275/568 (48%), Gaps = 68/568 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD+SL + G+++ +LGS GSGK LL+ IS R +GT GE+ ++G + FQ
Sbjct: 69 ILKDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQD 128
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
YV + SLTV +TL Y A L++ + + N ++ V+ +L+LS+VA +
Sbjct: 129 CFSYVLQSDVFLSSLTVRETLRYTAMLALCRSSADFY-NKKVEAVMTELSLSHVADQMIG 187
Query: 157 --NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
N ++ E RRV I QL++DP +++LDEPT LD ++ IV +L+ A+R R V
Sbjct: 188 SYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARR-DRIV 246
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLS 274
++T+ +PRS++ D+ A L G+L++ G ML +F + G+PCPE NP +Y+ L+
Sbjct: 247 IVTIHQPRSELFQHFDKIAILTYGELVFCGTPEEMLGFFNNCGYPCPEHSNPFDFYMDLT 306
Query: 275 TVDRRSRERFIESNNQIVALVEKFK-----------IEGAPYRKCASSV----------- 312
+VD +SRER IE+ ++ L FK IE A Y K +V
Sbjct: 307 SVDTQSREREIETYKRVQMLECAFKESDIYHKILENIERARYLKTLPTVPFKTKDPPGMF 366
Query: 313 -------------IMDHGNSTIPSLTS----------HKMPLVNFSKPGGFQDYQWSFMS 349
+M + + I L + + + N + G QD
Sbjct: 367 GKLGVLLRRVTRNLMRNKQAVIMRLVQNLIMGLFLIFYLLRVQNNTLKGAVQD------- 419
Query: 350 RNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILS 409
R GL++ + + + A FP+ R QE+Q+GLY +L Y+ LPFS+++
Sbjct: 420 RVGLLYQLVGATPYTGMLNAVNLFPMLRAVSDQESQDGLYHKWQMLLAYVLHVLPFSVIA 479
Query: 410 VGAASWIIFQATGLSTSTDLFQ-FSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYIN 468
S + + GL F FS L + L E+L++ LL +V++ + + ++
Sbjct: 480 TVIFSSVCYWTLGLYPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSIVALLS 539
Query: 469 IIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL-SRQMFGDGRLRNMYSDKYSNCT 527
I L++GSG++R+ + M L + Y T +Y L + +G N +
Sbjct: 540 ISGLLIGSGFIRNIQEMPIPLKILGYFTFQKYCCEILVVNEFYG----LNFTCGGSNTSM 595
Query: 528 IPHPFGCRYTDGASFLSERYGHETGDFS 555
+ HP C T G F+ + T F+
Sbjct: 596 LNHPM-CAITQGVQFIEKTCPGATSRFT 622
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Mus musculus (taxid: 10090) |
| >sp|Q9H222|ABCG5_HUMAN ATP-binding cassette sub-family G member 5 OS=Homo sapiens GN=ABCG5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/570 (29%), Positives = 274/570 (48%), Gaps = 66/570 (11%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQL 96
T ILKD+SL V G+++ +LGS GSGK LL+ +S R +GT GE+ ++G + +
Sbjct: 65 TRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFLGEVYVNGRALRREQ 124
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ YV L+ SLTV +TL+Y A L+I + + ++ V+A+L+LS+VA R
Sbjct: 125 FQDCFSYVLQSDTLLSSLTVRETLHYTALLAI-RRGNPGSFQKKVEAVMAELSLSHVADR 183
Query: 157 NISE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I ++ E RRV I QL++DP ++L DEPT LD ++ IV +L A+R +
Sbjct: 184 LIGNYSLGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLVELARR-N 242
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL 271
R V+LT+ +PRS++ D+ A L G+LI+ G ML++F G+PCPE NP +Y+
Sbjct: 243 RIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFNDCGYPCPEHSNPFDFYM 302
Query: 272 CLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPL 331
L++VD +S+ER IE++ ++ + +K ++ + M H T+P +P
Sbjct: 303 DLTSVDTQSKEREIETSKRVQMIESAYKKSAICHKTLKNIERMKH-LKTLP-----MVPF 356
Query: 332 VNFSKPGGFQD--------------------------------------------YQWSF 347
PG F + +
Sbjct: 357 KTKDSPGVFSKLGVLLRRVTRNLVRNKLAVITRLLQNLIMGLFLLFFVLRVRSNVLKGAI 416
Query: 348 MSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSI 407
R GL++ + + + A FPV R QE+Q+GLY +L Y LPFS+
Sbjct: 417 QDRVGLLYQFVGATPYTGMLNAVNLFPVLRAVSDQESQDGLYQKWQMMLAYALHVLPFSV 476
Query: 408 LSVGAASWIIFQATGLSTSTDLFQ-FSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSY 466
++ S + + GL F FS L + L E+L++ LL +V++ V +
Sbjct: 477 VATMIFSSVCYWTLGLHPEVARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVAL 536
Query: 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL-SRQMFGDGRLRNMYSDKYSN 525
++I +++GSG+LR+ + M +SY T +Y L + +G ++ SN
Sbjct: 537 LSIAGVLVGSGFLRNIQEMPIPFKIISYFTFQKYCSEILVVNEFYGLN-----FTCGSSN 591
Query: 526 CTIPHPFGCRYTDGASFLSERYGHETGDFS 555
++ C +T G F+ + T F+
Sbjct: 592 VSVTTNPMCAFTQGIQFIEKTCPGATSRFT 621
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Homo sapiens (taxid: 9606) |
| >sp|Q99PE7|ABCG5_RAT ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 166/568 (29%), Positives = 275/568 (48%), Gaps = 68/568 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD+SL + G+ + +LGS GSGK LL+ IS R +GT GE+ ++G + FQ
Sbjct: 69 ILKDVSLYIESGQTMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQD 128
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
Y+ + SLTV +TL Y A L++ + + + ++ VL +L+LS+VA +
Sbjct: 129 CVSYLLQSDVFLSSLTVRETLRYTAMLALRSSSADFY-DKKVEAVLTELSLSHVADQMIG 187
Query: 157 --NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
N ++ E RRV I QL++DP +++LDEPT LD ++ IV +L A+R +R V
Sbjct: 188 NYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARR-NRIV 246
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLS 274
++T+ +PRS++ D+ A L G+L++ G ML +F + G+PCPE NP +Y+ L+
Sbjct: 247 IVTIHQPRSELFHHFDKIAILTYGELVFCGTPEEMLGFFNNCGYPCPEHSNPFDFYMDLT 306
Query: 275 TVDRRSRERFIESNNQIVAL----------------VEK-----------FKIEGAPYRK 307
+VD +SRER IE+ ++ L +E+ FK + P
Sbjct: 307 SVDTQSREREIETYKRVQMLESAFRQSDICHKILENIERTRHLKTLPMVPFKTKNPPGMF 366
Query: 308 CASSV--------IMDHGNSTIPSLTS----------HKMPLVNFSKPGGFQDYQWSFMS 349
C V +M + I L + + + N G QD
Sbjct: 367 CKLGVLLRRVTRNLMRNKQVVIMRLVQNLIMGLFLIFYLLRVQNNMLKGAVQD------- 419
Query: 350 RNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILS 409
R GL++ + + + A FP+ R QE+Q+GLY +L Y+ +LPFSI++
Sbjct: 420 RVGLLYQLVGATPYTGMLNAVNLFPMLRAVSDQESQDGLYQKWQMLLAYVLHALPFSIVA 479
Query: 410 VGAASWIIFQATGLSTSTDLFQ-FSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYIN 468
S + + GL F FS L + L E+L++ LL +V++ + + ++
Sbjct: 480 TVIFSSVCYWTLGLYPEVARFGYFSAALLAPHLIGEFLTLVLLGMVQNPNIVNSIVALLS 539
Query: 469 IIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL-SRQMFGDGRLRNMYSDKYSNCT 527
I L++GSG++R+ M L + Y T +Y L + +G ++ SN +
Sbjct: 540 ISGLLIGSGFIRNIEEMPIPLKILGYFTFQKYCCEILVVNEFYGLN-----FTCGGSNTS 594
Query: 528 IPHPFGCRYTDGASFLSERYGHETGDFS 555
+P+ C T G F+ + T F+
Sbjct: 595 VPNNPMCSMTQGIQFIEKTCPGATSRFT 622
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Rattus norvegicus (taxid: 10116) |
| >sp|P58428|ABCG8_RAT ATP-binding cassette sub-family G member 8 OS=Rattus norvegicus GN=Abcg8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 159/270 (58%), Gaps = 15/270 (5%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQ 98
L ++++S +VR G++LA++GS G G+ LL+VI+ R G G+I ++G P +PQL Q
Sbjct: 108 LGIRNLSFKVRSGQMLAIIGSAGCGRATLLDVITGRDHGGKMKSGQIWINGQPSTPQLIQ 167
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
+V + L+P+LTV +TL + A + + S+ R+ R+ V+A+L L A +
Sbjct: 168 KCVAHVRQQDQLLPNLTVRETLTFIAQMRLPKTFSQAQRDKRVEDVIAELRLRQCANTRV 227
Query: 159 SE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
++ E RRV IG QL+ +P +L+LDEPT LD + + +V LS AK +R
Sbjct: 228 GNTYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVRTLSRLAK-GNRL 286
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCL 273
VL+++ +PRSD+ D + G IY G + M++YF SIG+PCP NP +Y+ L
Sbjct: 287 VLISLHQPRSDIFRLFDLVLLMTSGTPIYLGVAQHMVQYFTSIGYPCPRYSNPADFYVDL 346
Query: 274 STVDRRSRERFIESNNQIVALVEKFKIEGA 303
+++DRRS+E Q VA +EK ++ A
Sbjct: 347 TSIDRRSKE-------QEVATMEKARLLAA 369
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Rattus norvegicus (taxid: 10116) |
| >sp|Q9DBM0|ABCG8_MOUSE ATP-binding cassette sub-family G member 8 OS=Mus musculus GN=Abcg8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 160/269 (59%), Gaps = 10/269 (3%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTT 100
++++S +VR G++LA++GS G G+ +LL+VI+ R G G+I ++G P +PQL +
Sbjct: 89 IRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMKSGQIWINGQPSTPQLVRKC 148
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
+V L+P+LTV +TL + A + + S+ R+ R+ V+A+L L A +
Sbjct: 149 VAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGN 208
Query: 161 -----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++ E RRV IG QL+ +P +L+LDEPT LD + + +V+ LS AK +R VL
Sbjct: 209 TYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAK-GNRLVL 267
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLST 275
+++ +PRSD+ D + G IY G + M++YF SIG PCP NP +Y+ L++
Sbjct: 268 ISLHQPRSDIFRLFDLVLLMTSGTPIYLGAAQQMVQYFTSIGHPCPRYSNPADFYVDLTS 327
Query: 276 VDRRSRERFIESNNQIVALVEKF--KIEG 302
+DRRS+ER + + + +L F K++G
Sbjct: 328 IDRRSKEREVATVEKAQSLAALFLEKVQG 356
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Mus musculus (taxid: 10090) |
| >sp|Q9H221|ABCG8_HUMAN ATP-binding cassette sub-family G member 8 OS=Homo sapiens GN=ABCG8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 170/311 (54%), Gaps = 24/311 (7%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQ 98
L ++++S +VR G++LA++GS G G+ +LL+VI+ R G G+I ++G P SPQL +
Sbjct: 86 LGIQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKIKSGQIWINGQPSSPQLVR 145
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
+V L+P+LTV +TL + A + + S+ R+ R+ V+A+L L A +
Sbjct: 146 KCVAHVRQHNQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCADTRV 205
Query: 159 SE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
L+ E RRV IG QL+ +P +L+LDEPT LD + + +V LS AK +R
Sbjct: 206 GNMYVRGLSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAK-GNRL 264
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCL 273
VL+++ +PRSD+ D + G IY G + M++YF +IG+PCP NP +Y+ L
Sbjct: 265 VLISLHQPRSDIFRLFDLVLLMTSGTPIYLGAAQHMVQYFTAIGYPCPRYSNPADFYVDL 324
Query: 274 STVDRRSRER--------------FIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNS 319
+++DRRSRE+ F+E + + K + + C S + +
Sbjct: 325 TSIDRRSREQELATREKAQSLAALFLEKVRDLDDFLWKAETKDLDEDTCVESSVTPLDTN 384
Query: 320 TIPSLTSHKMP 330
+PS T KMP
Sbjct: 385 CLPSPT--KMP 393
|
Transporter that appears to play an indispensable role in the selective transport of the dietary cholesterol in and out of the enterocytes and in the selective sterol excretion by the liver into bile. Homo sapiens (taxid: 9606) |
| >sp|Q9LFG8|AB20G_ARATH ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 138/243 (56%), Gaps = 7/243 (2%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-SSGTTRGEIILDGTPMSPQ 95
+ T ++L IS E R GE++AVLG+ GSGK L++ ++ R S + RG+I L+G +
Sbjct: 121 MNTKVLLNGISGEAREGEMMAVLGASGSGKSTLIDALANRISKESLRGDITLNGEVLESS 180
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + YV L P LTVE+TL ++A + +S+ + AR++ ++ L L N A+
Sbjct: 181 LHKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAK 240
Query: 156 RNISE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
I + ++ E RRV IGT ++ DP++L LDEPT LD S Y++V +L A+
Sbjct: 241 TVIGDEGHRGVSGGERRRVSIGTDIIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSG 300
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270
S V++++ +P +L LD+ +L G+ +Y+G + ++F G P PE EN +
Sbjct: 301 S-IVIMSIHQPSYRILGLLDKLIFLSRGNTVYSGSPTHLPQFFSEFGHPIPENENKPEFA 359
Query: 271 LCL 273
L L
Sbjct: 360 LDL 362
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 142/510 (27%), Positives = 228/510 (44%), Gaps = 59/510 (11%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+LK +S V+PGE+LA+LG GSGK L+ ++ R G G + +G P + + + T
Sbjct: 98 LVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRKT 157
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS- 159
G+V L P LTV +TL Y A L + +++R + ++ V++DL L+ I
Sbjct: 158 -GFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGG 216
Query: 160 ----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++ E +RV IG +++ +P LLLLDEPT LD + IV+ L S A R R V+
Sbjct: 217 GLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLA-RGGRTVV 275
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGF-PCPELENPLMYYLCLS 274
T+ +P S + D+ L G IY+G + ++EYF SIG+ P NP + L L+
Sbjct: 276 TTIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLA 335
Query: 275 ---TVDRRSRERFIESNNQIVALVEKFKIEG---APYRKCASSVIMDHGNSTIPS----- 323
T D + ++ IE+N ++ L E+ ++ + Y+K + + + T P
Sbjct: 336 NGITSDTKQYDQ-IETNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTNA 394
Query: 324 -----------LTSHKMPLVNFSKPGGFQDYQWSF------------------------- 347
TS M K G + SF
Sbjct: 395 RLRKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWWHSRVA 454
Query: 348 --MSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPF 405
+ GL+F F F A FTFP R +E G+Y + + LP
Sbjct: 455 HLQDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPM 514
Query: 406 SILSVGAASWIIFQATGLSTSTDLFQFSLML-WSCFLFAEYLSVALLLVVESGFTAAVVS 464
++ I + GL S F +LM+ L A+ + +AL ++ AA +S
Sbjct: 515 ELILPTIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLS 574
Query: 465 SYINIIFLVLGSGYLRSFRSMAEWLVYMSY 494
S + ++FL+ G Y++ WL Y+S+
Sbjct: 575 SVLMLVFLLAGGYYIQHIPGFIAWLKYVSF 604
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUT0|AB2G_ARATH ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 159/302 (52%), Gaps = 19/302 (6%)
Query: 12 YYLKIDLQHPALVETGSCFQRVFGN---IQTALILKDISLEVRPGEVLAVLGSKGSGKRA 68
Y +KI + L +C +R GN + T ++L IS E R GE++AVLG+ GSGK
Sbjct: 105 YSVKIQKKFNPL----ACCRRS-GNDSSVNTKILLNGISGEAREGEMMAVLGASGSGKST 159
Query: 69 LLEVISRR-SSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127
L++ ++ R + + RG I L+G + + + YV L P LTVE+TL ++A
Sbjct: 160 LIDALANRIAKDSLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAEFR 219
Query: 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISE-----LTPSEHRRVVIGTQLVKDPVLL 182
+ +S+ + AR++ ++ L L + A+ I + ++ E RRV IG ++ DP++L
Sbjct: 220 LPRSLSKKKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGNDIIHDPIIL 279
Query: 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242
LDEPT LD S Y+++ +L A+ S V++++ +P ++ LD+ +L G+ +Y
Sbjct: 280 FLDEPTSGLDSTSAYMVIKVLQRIAQSGS-IVIMSIHQPSYRIMGLLDQLIFLSKGNTVY 338
Query: 243 AGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEG 302
+G + ++F P PE EN + L L R E E +V ++++ +
Sbjct: 339 SGSPTHLPQFFSEFKHPIPENENKTEFALDLI----RELEYSTEGTKPLVEFHKQWRAKQ 394
Query: 303 AP 304
AP
Sbjct: 395 AP 396
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80946|AB1G_ARATH ABC transporter G family member 1 OS=Arabidopsis thaliana GN=ABCG1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 134/242 (55%), Gaps = 7/242 (2%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-SSGTTRGEIILDGTPMSPQL 96
+T +L +IS E R GE++AVLG+ GSGK L++ ++ R + G+ +G + L+G + ++
Sbjct: 105 KTKTLLNNISGETRDGEIMAVLGASGSGKSTLIDALANRIAKGSLKGTVKLNGETLQSRM 164
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ YV L P LTVE+TL +AA + + + + R++ ++ L + N A+
Sbjct: 165 LKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLPKSKKKLRVQALIDQLGIRNAAKT 224
Query: 157 NISE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I + ++ E RRV IG ++ DP+LL LDEPT LD S +++V +L A+ S
Sbjct: 225 IIGDEGHRGISGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGS 284
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL 271
V++++ +P VL LDR +L G +Y+G + +F G P PE EN + L
Sbjct: 285 -IVIMSIHQPSHRVLGLLDRLIFLSRGHTVYSGSPASLPRFFTEFGSPIPENENRTEFAL 343
Query: 272 CL 273
L
Sbjct: 344 DL 345
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | ||||||
| 328718471 | 638 | PREDICTED: ATP-binding cassette sub-fami | 0.894 | 0.849 | 0.546 | 1e-180 | |
| 242023552 | 636 | ATP-binding cassette transporter, putati | 0.915 | 0.872 | 0.492 | 1e-170 | |
| 91091098 | 722 | PREDICTED: similar to AGAP002051-PA [Tri | 0.902 | 0.757 | 0.466 | 1e-155 | |
| 391347662 | 636 | PREDICTED: ATP-binding cassette sub-fami | 0.871 | 0.830 | 0.460 | 1e-144 | |
| 321458586 | 639 | hypothetical protein DAPPUDRAFT_300887 [ | 0.866 | 0.821 | 0.449 | 1e-143 | |
| 357624450 | 633 | hypothetical protein KGM_20384 [Danaus p | 0.904 | 0.865 | 0.432 | 1e-140 | |
| 241997866 | 637 | ABC transporter, putative [Ixodes scapul | 0.848 | 0.806 | 0.418 | 1e-119 | |
| 307196401 | 625 | ATP-binding cassette sub-family G member | 0.889 | 0.862 | 0.418 | 1e-119 | |
| 110758885 | 625 | PREDICTED: ATP-binding cassette sub-fami | 0.891 | 0.864 | 0.416 | 1e-119 | |
| 347967082 | 602 | AGAP002051-PA [Anopheles gambiae str. PE | 0.836 | 0.842 | 0.418 | 1e-118 |
| >gi|328718471|ref|XP_001944095.2| PREDICTED: ATP-binding cassette sub-family G member 5-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 324/593 (54%), Positives = 422/593 (71%), Gaps = 51/593 (8%)
Query: 11 EYYLKID-LQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRAL 69
+Y L+++ + H VE SCFQR+FG++QT LILKDI+LEVR GEV+A+LGSKGSGKRAL
Sbjct: 10 DYSLELNNIFHTGQVEPASCFQRLFGSVQTGLILKDITLEVRAGEVMAILGSKGSGKRAL 69
Query: 70 LEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129
LEVI+RRS G +RG+I+LDG P++ +F C YV HR DL+PSL+V+QTL+YAA+LSIG
Sbjct: 70 LEVIARRSKGLSRGQILLDGRPLTQAMFNQCCAYVGHRADLVPSLSVQQTLHYAANLSIG 129
Query: 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189
QVS YV+++R+RQVLADLALS V+R ++ LT E+RR+VIGTQLVKDPVLLLLDEPT
Sbjct: 130 SQVSGYVKDSRVRQVLADLALSQVSRHSVEALTEGEYRRLVIGTQLVKDPVLLLLDEPTA 189
Query: 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
LDPL+TYL+VSM+SS+AKR+ RAV+LTMEKPRSDV PFL+R AYLCLGDL+YAGPTR+M
Sbjct: 190 GLDPLTTYLVVSMVSSHAKRRGRAVILTMEKPRSDVFPFLERVAYLCLGDLVYAGPTRMM 249
Query: 250 LEYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCA 309
L+YFR++GFPCPE+ENPLMYYLCLSTVDRRSRERF+ESN QIVALVEKFK+EGAPYRK +
Sbjct: 250 LDYFRAVGFPCPEMENPLMYYLCLSTVDRRSRERFVESNAQIVALVEKFKMEGAPYRKSS 309
Query: 310 SSVIM------DHGNSTIP--------SLTSHKMPLVN---------------------F 334
+ ++ DH ++ P S T M L
Sbjct: 310 AMSVLLGSPPNDHQPNSHPYPYSAQGSSTTQIGMTLYQRQFASTFGCSWQALFYLSARLI 369
Query: 335 SKPGGF----------QDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEA 384
+ P F +DYQ +FMSR+GL+ + I+ +Y S F A+TF HRTRYYQE
Sbjct: 370 AMPIAFLLVWIFFHDIKDYQTTFMSRSGLLLTCITTTYLTSIFTTAYTFAPHRTRYYQEN 429
Query: 385 QEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAE 444
Q+G Y+GPLF+++Y FSLP + L+V +S I++ T+L F+ +L SC+LFAE
Sbjct: 430 QDGSYNGPLFLVSYFTFSLPLAFLTVFGSSAILYHLMKFDDWTELSLFAAVLLSCYLFAE 489
Query: 445 YLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAF 504
L VA++ + ++ + +V YI + +VLGSG LRS+R M+EWL +++Y TQ RY GA+
Sbjct: 490 QLVVAVMAISKNPYNTSVFCIYIVSVMIVLGSGMLRSYRGMSEWLSWVTYATQTRYAGAY 549
Query: 505 LSRQMFGDGRLR--NMYSDKYSNCTIP--HPFGCRYTDGASFLSERYGHETGD 553
L+ Q F DGR + + NC+IP PF CRY DGAS+++ERY D
Sbjct: 550 LTAQAF-DGRQQYNGLPQSVEQNCSIPAAEPFVCRYPDGASYVNERYPATVAD 601
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242023552|ref|XP_002432196.1| ATP-binding cassette transporter, putative [Pediculus humanus corporis] gi|212517593|gb|EEB19458.1| ATP-binding cassette transporter, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 309/627 (49%), Positives = 415/627 (66%), Gaps = 72/627 (11%)
Query: 24 VETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG 83
VE G+CFQ++ N++T LILKD+SLEV GEVLAVLGSKGSGKRALLEVISRR+ G TRG
Sbjct: 13 VEQGTCFQKLMDNVKTGLILKDVSLEVHSGEVLAVLGSKGSGKRALLEVISRRTRGPTRG 72
Query: 84 EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
EI+L+G PMS LFQ CGYV H+ DLIPSLTV QTL++A++L+IG +V++Y++ +R+RQ
Sbjct: 73 EILLNGAPMSAALFQNNCGYVTHKCDLIPSLTVMQTLHFASNLTIGSKVTQYMKRSRVRQ 132
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
VLADLAL+ VA R + L+ SE+RR++IG QL++DPVLLLLDEPT +LDPL+TYL+VS+L
Sbjct: 133 VLADLALTQVANRKVDGLSNSEYRRLMIGVQLMRDPVLLLLDEPTWDLDPLNTYLVVSIL 192
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPEL 263
S++AK+ +RA++LTMEKPRSDV PFLDR YLCLGD++Y G T+ MLEYFR IGFPCPEL
Sbjct: 193 SNHAKKYNRAIILTMEKPRSDVFPFLDRVTYLCLGDVVYTGATQFMLEYFRGIGFPCPEL 252
Query: 264 ENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPS 323
ENPLMYYLCLSTVDRRSRERFIESN+QI ALVEKFK+EG P+RK +V + P
Sbjct: 253 ENPLMYYLCLSTVDRRSRERFIESNHQIAALVEKFKVEGGPFRK---AVPASQSEAVDPL 309
Query: 324 L--TSHKMPLVNFSKPGGFQ---------------------------------------- 341
+ HK+PL F +PG FQ
Sbjct: 310 MAGNQHKVPLSAFGRPGTFQVASTLYMRNLATTFNLSSDGFKNVFLRLLFLPLIFSLLYG 369
Query: 342 ------DYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFI 395
+YQ +F+SRNG +F+ ++ +YF S +TF HRTRYYQE+QEGLY G LF
Sbjct: 370 LYFNMGNYQRTFLSRNGFVFNVMAAAYFTSIVSTVYTFYQHRTRYYQESQEGLYGGSLFY 429
Query: 396 LTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVE 455
+ Y +SLPFS +S A++ II + S+ D + + LWS L AE+ ++ ++LVV+
Sbjct: 430 IVYTVYSLPFSFVSTLASAKIIHLLSDYSSENDWMRLTCALWSAVLLAEHQTMVVMLVVQ 489
Query: 456 SGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRL 515
+ TA + S I I+ LVLGSG L+++ +AEWL Y++Y TQ RY+G+FL + G +
Sbjct: 490 TRLTAGLTSCTITILTLVLGSGNLKAYSGLAEWLTYLTYCTQTRYLGSFLIHEYLWSGHV 549
Query: 516 RNMYSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHE 575
+S+K++ CR + H GD ++ ++ G +L ER+ +
Sbjct: 550 DLPFSEKHT---------CR---------NKTHH--GDADTWLCRFNSGQEYLRERFARD 589
Query: 576 TGDFSLSDVLDSNFNMTITLSFAFTLM 602
D L + D N N++I L F+ L+
Sbjct: 590 -NDVYLQLLTDPNLNLSICLGFSVGLI 615
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91091098|ref|XP_968555.1| PREDICTED: similar to AGAP002051-PA [Tribolium castaneum] gi|270014078|gb|EFA10526.1| hypothetical protein TcasGA2_TC012778 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 297/636 (46%), Positives = 400/636 (62%), Gaps = 89/636 (13%)
Query: 24 VETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG 83
VE GSC QR+ G+I+T +ILKD+S++V GEVLAVLGSKGSGK+ALL+VISRR G TRG
Sbjct: 98 VEPGSCMQRLLGSIKTGVILKDVSMKVHSGEVLAVLGSKGSGKKALLDVISRRVQGPTRG 157
Query: 84 EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+I+L+ PM+ LFQ CGYV H+ DLIP LTVEQ LYY +++ Y++ ++++Q
Sbjct: 158 QILLNNHPMNLSLFQQRCGYVTHKCDLIPGLTVEQNLYYTP-----TKLTGYLKKSKVKQ 212
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
V+ADLALS VA R LT SE+RR++IG QL+KDPV+LLLDEPT +LDPL+TYL+VS+L
Sbjct: 213 VMADLALSQVANRCTENLTQSEYRRLMIGIQLIKDPVILLLDEPTWDLDPLNTYLVVSIL 272
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPEL 263
S+ +K+ A++LTMEKPRSDV PFL+R YLCLGD++Y G TR MLEYF +IGFPCP+L
Sbjct: 273 SNASKKYGTAIILTMEKPRSDVFPFLERVLYLCLGDVVYTGGTRQMLEYFTAIGFPCPQL 332
Query: 264 ENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPS 323
ENPLMYYLCLSTVDRRSRERF+ESN+QI ALVEKFKIEG YRK S+ + N
Sbjct: 333 ENPLMYYLCLSTVDRRSRERFVESNHQIAALVEKFKIEGGAYRK--GSITGPNHNLDGGL 390
Query: 324 LTSHKMPLVNFSKPGGFQD----------------------------------------- 342
+K+PL+ +PG +Q
Sbjct: 391 GHGNKVPLL-LGRPGAWQVGWTIYSRLLVATLSIQKAGLLRLFLRLFFVPLFFFVLWLFY 449
Query: 343 -----YQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILT 397
+Q +F++R GL+ + + G+YF+ + F +PV RTRY+QE+QEGLY G LF++T
Sbjct: 450 RDMQMFQHTFVTRTGLVLNCLCGAYFLGILNSIFLYPVFRTRYFQESQEGLYGGALFLIT 509
Query: 398 YIFFSLPFSILSVGAASWIIFQATG-LSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVES 456
Y S+PFS +SV AAS I++ G + F+L+LW+C++FAE ++A+L+VV+S
Sbjct: 510 YNLVSIPFSFVSVAAASAILYPLIGSFDDPSQYLYFALVLWACYIFAEQQTMAILMVVKS 569
Query: 457 GFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGR-L 515
+AA+ S YI I + L SG LRS + + +WL Y++Y TQ RY AFL+RQ F L
Sbjct: 570 HLSAAIFSIYITCICITLSSGILRSIKGLQQWLYYLTYATQVRYASAFLNRQTFLIPELL 629
Query: 516 RNMYSDKYSNCTIPHPFG---------CRYTDGASFLSERYGHETGDFSFFITKYTDGAS 566
+ D NCT + CRY++G FL ERY + D F +DG
Sbjct: 630 ETLPYDLKHNCTNMNLIETAASSSSGFCRYSNGQEFLVERYSRDKTDVIF-----SDG-- 682
Query: 567 FLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602
+LD + N+ IT +FA ++
Sbjct: 683 -----------------ILDFDMNIGITFAFALGMV 701
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|391347662|ref|XP_003748075.1| PREDICTED: ATP-binding cassette sub-family G member 5-like [Metaseiulus occidentalis] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/582 (46%), Positives = 379/582 (65%), Gaps = 54/582 (9%)
Query: 16 IDLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75
+ + + V+T SC Q + G TA ++KD+SLEV GEV+AVLGSKGSGK+ALLEVI+R
Sbjct: 10 VGIHYTGPVQTPSCVQSLTGTGLTAPLIKDVSLEVHAGEVMAVLGSKGSGKKALLEVIAR 69
Query: 76 RSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
R+ G TRG+I+L+ P++ +LFQ CGYV R +L+P LTV Q+L A L++G +V
Sbjct: 70 RAMGPTRGQILLNDIPITVRLFQEQCGYVPRRVNLVPGLTVRQSLDVGAQLTVGSKVPAS 129
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
V+ R++QV+ADLAL++VA + +S L+ +E RR+ IG +LV+DPVL++LDEPT +LDPL+
Sbjct: 130 VKKTRVKQVMADLALNSVAEKEVSTLSMNEQRRLAIGLELVRDPVLVILDEPTADLDPLN 189
Query: 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255
TY +VS+L+++AK+ +R VL++M KPRSD+ PFLDR YLCLG+L+Y G TR ML+YFR+
Sbjct: 190 TYFVVSILANHAKKYNRIVLMSMSKPRSDIFPFLDRVTYLCLGELVYTGSTRHMLDYFRN 249
Query: 256 IGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMD 315
+GFPCPE+ENPLMYYLCLSTVDRR+RERF+ES++QI +LVEKF+IEG+ YRK AS I D
Sbjct: 250 VGFPCPEMENPLMYYLCLSTVDRRTRERFLESSSQIQSLVEKFRIEGSRYRKMASGAISD 309
Query: 316 HGNSTIPSLTSHKMPLVNFSKPGGFQ--------------DYQW---------------- 345
T P + +K+PL + +P Q ++ W
Sbjct: 310 ---VTPPPPSEYKLPLTAYGQPSSVQVFAALYGRFMASSFNFNWSAIRDLTLRTLVLPAF 366
Query: 346 ----------------SFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLY 389
SF +RNG++ SSI+ + F+S I A T+ HRTRYYQE++EG Y
Sbjct: 367 FAFMLIFFYPLQYSQQSFFTRNGVLLSSITATSFLSAVITAITYAPHRTRYYQESREGKY 426
Query: 390 SGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQ-FSLMLWSCFLFAEYLSV 448
GPLF+ T+ FS+P SI SV AA I++ A G+ + + F +LW + FAE +V
Sbjct: 427 RGPLFVFTHALFSMPMSIFSVFAAGSIVYGAGGMRPEWERWAPFCAILWCFYAFAEQQTV 486
Query: 449 ALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQ 508
AL++V+ S +TA V S Y I++ L SG ++S M +W Y SYG RY GAFL +
Sbjct: 487 ALMMVIRSSYTACVTSLYFLAIYITLASGGVKSLVVMPDWAYYASYGVMHRYAGAFLYQN 546
Query: 509 MFGD-GRLRNMYSDKYSNCTIPH--PFGCRYTDGASFLSERY 547
F + L + S ++C P+ P C + +G F+S++Y
Sbjct: 547 EFENYAALDYVPSLNGTSCG-PNVDPGRCFFVNGGHFISQKY 587
|
Source: Metaseiulus occidentalis Species: Metaseiulus occidentalis Genus: Metaseiulus Family: Phytoseiidae Order: Mesostigmata Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321458586|gb|EFX69652.1| hypothetical protein DAPPUDRAFT_300887 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/596 (44%), Positives = 387/596 (64%), Gaps = 71/596 (11%)
Query: 10 EEYYLKID-LQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRA 68
+Y L+++ + H +E +C +++ GN ++LKD+S+EV GE++AVLGSKGSGK+
Sbjct: 8 NDYVLELNNVYHAGQMEASTCLEKMVGNSSVGVVLKDVSVEVHGGELMAVLGSKGSGKKT 67
Query: 69 LLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128
LL+VI+RR+ G TRG+I+L+G PMS +LFQ +C YV + L+ LT +QTLYYAAHL+I
Sbjct: 68 LLDVIARRAQGPTRGQILLNGVPMSMRLFQDSCAYVGRKCHLLEGLTTKQTLYYAAHLTI 127
Query: 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188
VS YV++ R++QV+ADLAL +VA + L SE+RR+ IG QL++DPV++LLDEPT
Sbjct: 128 ---VSSYVKSTRVKQVMADLALVHVANHGVHFLNQSEYRRLAIGIQLLRDPVVILLDEPT 184
Query: 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248
+LDPL TY++VS+LS++AK+ +R V+L+ EKPRSD+ PFLDR YLCLGD++Y G TR+
Sbjct: 185 SDLDPLHTYMVVSILSNHAKKYNRIVVLSTEKPRSDIFPFLDRVTYLCLGDVVYTGATRM 244
Query: 249 MLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKC 308
ML+YFR +GFPCPELENPLM+YLCLSTVDRRS+ERF+ES+NQI ALV+KF+++G P+RKC
Sbjct: 245 MLDYFRHLGFPCPELENPLMFYLCLSTVDRRSQERFLESSNQIAALVDKFRLDGRPFRKC 304
Query: 309 ASSVIMDHGNSTIPSLTSHKMPLVNFSKPGGFQ------DYQW----------------- 345
A S DH T H++PL + +P Q +W
Sbjct: 305 AVS-YADHVME-----TEHRLPLTAYGRPTTTQVLTNLMSREWAILWNCGSPIGRSHFFL 358
Query: 346 ------------------------SFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYY 381
S+ SRNGL++S ++G+ F+S P RTRYY
Sbjct: 359 RLLLLPVFFFLLWIFYYDLPLNQQSYASRNGLLYSCLAGTMFLSVASTVAVHPALRTRYY 418
Query: 382 QEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLM---LWS 438
QE+++G Y GP FIL SLP S+++V AAS II+ G+ ST+ FQ+ L LW+
Sbjct: 419 QESRDGFYFGPSFILARSLASLPLSVMTVAAASAIIY--FGMPISTNPFQYLLFGSTLWA 476
Query: 439 CFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQA 498
F E ++ALL++V+S F AA+ S ++ I++L +GS +R+ + ++L Y++Y TQ+
Sbjct: 477 VHYFMEQQTMALLMLVKSSFNAALTSLFLGIVYLNVGSAMVRAIPGLPDYLYYLTYVTQS 536
Query: 499 RYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHP-------FGCRYTDGASFLSERY 547
RY A L+ Q F + ++ S + +IP P +GCRY++G +L ERY
Sbjct: 537 RYAAAVLNEQHFRN--FSSLPSVLNATLSIPCPSGTTFSNYGCRYSNGTHYLMERY 590
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357624450|gb|EHJ75229.1| hypothetical protein KGM_20384 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 272/629 (43%), Positives = 396/629 (62%), Gaps = 81/629 (12%)
Query: 20 HPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG 79
H VE GS FQR+ G+++T +ILKD+S GEV A+LGSKGSGKRALL+VISRR
Sbjct: 15 HSGQVEPGSFFQRLTGSVKTGVILKDVSFITHSGEVTAILGSKGSGKRALLDVISRRVP- 73
Query: 80 TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
++G ++L+G P+ + F TC V H T L+P LTV+QTL LS+ ++S Y++ +
Sbjct: 74 -SKGHVLLEGLPLEKEQFMNTCALVRHSTKLMPGLTVQQTL----SLSL-TKISGYLKAS 127
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+++QV+ADLALS VA + ++ LT SE+RR+VIG QL++DP++LLLDEPT +LDPL+TYL+
Sbjct: 128 KVKQVMADLALSQVANKCVTSLTKSEYRRLVIGVQLIRDPIILLLDEPTWDLDPLNTYLV 187
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFP 259
+S+LS+ AK+ ++LTMEKPRSDV PFLDR YLCLGD +YAGPTR +L+YF IGFP
Sbjct: 188 ISILSNAAKKYGTTIILTMEKPRSDVFPFLDRVVYLCLGDAVYAGPTRALLDYFTGIGFP 247
Query: 260 CPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPY---RKCASSVIMDH 316
CP+LENPLMYYLCLSTVDRRSRERFIESN+QI ALVEKFK EG P+ R + + M +
Sbjct: 248 CPQLENPLMYYLCLSTVDRRSRERFIESNHQIAALVEKFKTEGVPHEHGRSNPNKIQMSY 307
Query: 317 GN---------------STIPSLTSH---KMPLVNFSKPGGF----------QDYQWSFM 348
G ++I +L H +M + + P F +DYQ +F+
Sbjct: 308 GKPSGVRVIWMLYLRTLASIFNLRKHGIKQMSMRLLTLPIYFFILWIFYNDAKDYQRAFI 367
Query: 349 SRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSIL 408
+++GLIF++++G+YFIS F +R+RYY E++ G+YSG +L + SLP S+L
Sbjct: 368 TKSGLIFNAMTGTYFISILNTICLFGPYRSRYYCESEAGVYSGASALLAWSLVSLPASLL 427
Query: 409 SVGAASWIIFQATG-LSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467
+ AA+ I++ G +S QF+L+LWSC+++AE ++A+++ V++G A+++ YI
Sbjct: 428 TSLAAAAIVYPILGDISEGVAFLQFALILWSCYIYAEQQTIAIMMFVKNGLVTALINIYI 487
Query: 468 NIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCT 527
++++L SG LRS++ +W+ Y++Y T RY FL R +F + + NCT
Sbjct: 488 TCVYVMLASGVLRSYKGYEDWMFYLTYLTHTRYASIFLHRSVFKQPTFNILPYSENENCT 547
Query: 528 -------------IPHPFGCRYTDGASFLSERYGHET--GDFSFFITKYTDGASFLSERY 572
CRY G +FL+ER+ ++ GD
Sbjct: 548 SITNLIQTSSNMNANSNANCRYPSGKAFLTERFTYKNFAGDI------------------ 589
Query: 573 GHETGDFSLSDVLDSNFNMTITLSFAFTL 601
+++GDF++ FN+ I SFAF+L
Sbjct: 590 -YQSGDFNM------EFNLGI--SFAFSL 609
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241997866|ref|XP_002433576.1| ABC transporter, putative [Ixodes scapularis] gi|215495335|gb|EEC04976.1| ABC transporter, putative [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 242/578 (41%), Positives = 345/578 (59%), Gaps = 64/578 (11%)
Query: 24 VETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG 83
V +CFQ G TA +LKD+SLE+ GEV+AVLGSKGSGK+ALLEV++RR+ G TRG
Sbjct: 20 VAPPTCFQAFTGTGVTAPLLKDVSLELHAGEVMAVLGSKGSGKKALLEVVARRAMGPTRG 79
Query: 84 EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+I+L+ P++ +LFQ CGYV R L+P +TV QTL++AA L++ +VS V+ R++Q
Sbjct: 80 QILLNDVPLTVRLFQEQCGYVARRVTLVPGVTVRQTLHFAAKLTVASKVSGSVKRGRVKQ 139
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
V+ADLAL+ V+ + +S L+ +E+RR+ I +LV+DPVL++LDEPT +LDPL+TY +VS+L
Sbjct: 140 VMADLALNQVSNKEVSTLSVNEYRRLSIAMELVRDPVLIVLDEPTADLDPLNTYFVVSIL 199
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPEL 263
+++AK+ +R VLLTM KPRSD+ PFLDR AYLCLG+L+Y G TR MLEYFRSIGFPCPEL
Sbjct: 200 ANHAKKYNRLVLLTMSKPRSDIFPFLDRVAYLCLGELVYTGHTRTMLEYFRSIGFPCPEL 259
Query: 264 ENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFK-----IEGAPYRKCASSVIMDHGN 318
ENPLMYY + + +R RFI+S++QI L +G P + GN
Sbjct: 260 ENPLMYYRLFARIPQRYLSRFIDSSSQIQTLWRNPDGRLPLPQGGPPS--------EMGN 311
Query: 319 STIPSLTSHKMPLVNFSKPGGFQ------------------------------------- 341
T S +K+PL + +P +
Sbjct: 312 MTESS--QYKLPLTAYGQPSCWHTFWALYGRLWASSFNCNGRAMGHLGLRVALMPVLFAL 369
Query: 342 ---------DYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGP 392
+Q SF+SRNGL S S F + I A T+ HRTRYYQE++EG Y GP
Sbjct: 370 LLLFYFPLSGFQHSFLSRNGLFLSCFVASSFGAAAITAVTYAPHRTRYYQESREGKYRGP 429
Query: 393 LFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQ-FSLMLWSCFLFAEYLSVALL 451
LF+ ++ FS+P S++SV A + II+ TGL + F +LW + AE +VAL+
Sbjct: 430 LFVFSHTVFSMPLSVISVFAGATIIYAGTGLRMDWQRWATFCGVLWCLYALAEQQTVALM 489
Query: 452 LVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSR-QMF 510
+VV+S + A S+ I I + L SG +RS + +W Y++Y T RY AF+ + ++
Sbjct: 490 MVVKSSYAAFRASACILSICIALASGTVRSLVVLPDWTYYLTYATLQRYAAAFVQQNELD 549
Query: 511 GDGRLRNMYSDKYSNCTIPHPFG-CRYTDGASFLSERY 547
L N+ S + C G C + +G +L ++
Sbjct: 550 MHPGLENLPSFNGTLCGPNVESGRCFFVNGTHYLGHKF 587
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307196401|gb|EFN77990.1| ATP-binding cassette sub-family G member 5 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 263/629 (41%), Positives = 357/629 (56%), Gaps = 90/629 (14%)
Query: 22 ALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT 81
A+V GSC + + +L+D+S V GEVLA+LGSKGSGKRALL+VI+ R+ G T
Sbjct: 18 AVVIEGSCLNKS----EPTAVLRDVSARVHGGEVLAILGSKGSGKRALLDVIAGRAEGET 73
Query: 82 RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
RG + L+G ++ +LF+ GYV HR L+PSLTV QTL YA L+ + R AR+
Sbjct: 74 RGRVTLNGNLLTTELFRRHGGYVAHRCHLLPSLTVRQTLTYATWLA-----NLNNREARV 128
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
RQ LADLALS VA R++S+LT E+RR+++G QL KDP LLLLDEPT + DPL+TYLIVS
Sbjct: 129 RQTLADLALSQVANRSVSDLTRPEYRRLMLGVQLAKDPTLLLLDEPTWDTDPLNTYLIVS 188
Query: 202 MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCP 261
ML SYA R+ V+LTME PRSDVLPF+ R LCLG ++Y+GPTR ML+YF IGFPCP
Sbjct: 189 MLWSYATRRGSIVVLTMETPRSDVLPFVSRVTLLCLGAVVYSGPTRSMLDYFTYIGFPCP 248
Query: 262 ELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTI 321
ELENPLMYYLCLSTVDRRSR+RF+ESN QI LVEKFK++G Y K A V + +T+
Sbjct: 249 ELENPLMYYLCLSTVDRRSRDRFLESNQQISVLVEKFKVDGMLYMKEAPQVPHNVKETTL 308
Query: 322 PSLTSHKMPLVNFSKPGGFQD--------------------------------------- 342
+ HK L KPG F
Sbjct: 309 GIM--HK-GLGRGIKPGCFSTLLALYLRGMAATFSFNKTGLGHFAARLLLLPFLVALMSI 365
Query: 343 -YQWS-------FMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLF 394
Y S F+ GLIF+ ++ Y + FP R RYYQE +EGLY G +F
Sbjct: 366 LYSHSSPVQSRIFLQTGGLIFNVLTLFYVSGIAATSLLFPGFRARYYQEKREGLYGGAMF 425
Query: 395 ILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVV 454
+ Y SLP S +S I+ L S+ + + LWS ++ AE ++VA+L+VV
Sbjct: 426 LTAYTLLSLPLSFISTLITIGILIPILELDISSWAYACGI-LWSSYVAAEQVTVAVLMVV 484
Query: 455 ESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGR 514
T AV Y+ ++ LV+ SG +RS +++ WL +S RY L++ +
Sbjct: 485 GRPITGAVTVLYMTLLSLVIASGAIRSLKNLPYWLAMVSTALPTRYASLALNQLVIDVPT 544
Query: 515 LRNM-YSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYG 573
+ N+ Y++ ++ IP CRY DG ++L ER+ E G+
Sbjct: 545 MSNLAYNESFTCPGIPEL--CRYPDGKTYLIERFTRE-GE-------------------- 581
Query: 574 HETGDFSLSDVLDSNFNMTITLSFAFTLM 602
++S+VL+ + N+ I+L+FA L+
Sbjct: 582 ------NISEVLNVDLNLLISLAFAVGLI 604
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110758885|ref|XP_001122245.1| PREDICTED: ATP-binding cassette sub-family G member 5-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 260/624 (41%), Positives = 354/624 (56%), Gaps = 84/624 (13%)
Query: 23 LVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR 82
+V GSC + + +L+D+S V GEVLA+LGSKGSGKRALL+VI+ R+ G TR
Sbjct: 19 VVIEGSCLSKS----EPTAVLRDVSARVHGGEVLAILGSKGSGKRALLDVIAGRAEGETR 74
Query: 83 GEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
G + L+ ++P+LF+ GYV HR L+PSLTV QTL YA L+ + R AR+R
Sbjct: 75 GRVTLNNNLLTPELFRRHGGYVAHRCHLLPSLTVRQTLIYATWLA-----NLNNREARLR 129
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
Q LADLALS VA R++++LT E+RR+++G QL KDP LLLLDEPT + DPL+TYLIVSM
Sbjct: 130 QTLADLALSQVANRSVNDLTKPEYRRLMLGVQLAKDPTLLLLDEPTWDTDPLNTYLIVSM 189
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPE 262
L SYA R+ V+LTME PRSDVLPF+ R LCLG ++Y+GPTR ML+YF IGFPCPE
Sbjct: 190 LWSYATRRGSIVVLTMETPRSDVLPFVSRVTLLCLGAVVYSGPTRSMLDYFTYIGFPCPE 249
Query: 263 LENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSV---------- 312
LENPLMYYLCLSTVDRRSR+RF+ESN QI LVEKFK EG Y K A V
Sbjct: 250 LENPLMYYLCLSTVDRRSRDRFLESNQQISVLVEKFKAEGVIYMKEAPQVPPNIKDTPLG 309
Query: 313 IMDHGN---------STIPSLTSHKMPLV-NFSKPG---------------GFQDYQWS- 346
IM G ST+ +L M F+K G +S
Sbjct: 310 IMHKGLGRGIKPGCFSTLFALYLRGMAATFAFNKCGLGHFAARLLLLPFSIALMSILYSH 369
Query: 347 --------FMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTY 398
F+ GL+F+ ++ Y + A FP +R RYYQE +EGLY G +F+ Y
Sbjct: 370 STPVQSRIFLQTGGLVFNVVTLFYVVGIACTALLFPGYRARYYQEKREGLYGGAMFLTAY 429
Query: 399 IFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGF 458
SLP S +S I+ L ST + +LW+ ++ AE ++VA+L+++ F
Sbjct: 430 ALLSLPLSFISTMITIGILVPILELDLSTWAYACG-VLWASYVAAEQITVAVLMIIGKPF 488
Query: 459 TAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNM 518
T ++ Y+ ++ L++ SG +RS + + WL +S ARY L++ N+
Sbjct: 489 TGGIIVLYMTLVSLIVSSGTIRSLKGLPYWLAAISTTLPARYASLALNQLAIDVPIFLNL 548
Query: 519 -YSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETG 577
Y++ ++ IP CRY DG S+L ER+ E +
Sbjct: 549 HYNESFTCPGIPEL--CRYPDGRSYLIERFTREGEN------------------------ 582
Query: 578 DFSLSDVLDSNFNMTITLSFAFTL 601
+S+VL+ + N+ I+L+FA L
Sbjct: 583 ---ISEVLNVDLNLLISLAFAVGL 603
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347967082|ref|XP_320996.5| AGAP002051-PA [Anopheles gambiae str. PEST] gi|333469765|gb|EAA01062.5| AGAP002051-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/592 (41%), Positives = 336/592 (56%), Gaps = 85/592 (14%)
Query: 17 DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76
++ H V+TG CF G Q+AL+LK + L V GEV+A+LGSKGSGKRALL+VI+RR
Sbjct: 12 NIYHTTEVDTGGCFN---GGGQSALVLKGVHLTVHSGEVMAILGSKGSGKRALLDVIARR 68
Query: 77 SSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV 136
S G++RG+++L+G P++ LFQ CGYV H D IP LTV QTL+Y + G Y+
Sbjct: 69 SDGSSRGQVLLNGAPLTKSLFQQRCGYVTHACDFIPGLTVSQTLHYTPTILGG-----YL 123
Query: 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
+++++RQVLADLALS V+ + + L SE RR+ IG QLV+DPV+LLLDEPT LDPLS
Sbjct: 124 KSSKVRQVLADLALSQVSHKKVENLNISEKRRLAIGIQLVRDPVMLLLDEPTQGLDPLSA 183
Query: 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256
YL++S+LS+ AK+ +LL++EKPRSDV PFLDR +LCLG +Y+G TR MLEYF I
Sbjct: 184 YLLISILSNSAKKTGCGILLSLEKPRSDVFPFLDRALFLCLGGAVYSGGTRAMLEYFHGI 243
Query: 257 GFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDH 316
GFPCP+LENPLMYYLCLSTVDRRSR+RF+ES+ QI ALVE+F E P +
Sbjct: 244 GFPCPQLENPLMYYLCLSTVDRRSRDRFLESSQQIEALVERFARE-TPIPE--------- 293
Query: 317 GNSTIPSLTSHKMPLVNFSKPGGFQ----------------------------------- 341
+ I + S K+PL + KPG +
Sbjct: 294 --APINPIGSGKIPLA-YGKPGELKVWGILYLRLLAATFSCGYAGMKALFLRLLALPATM 350
Query: 342 -----------DYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYS 390
D F S+ GLI S ++ SY + + FP R R+ QE EGLY+
Sbjct: 351 GLLWLFYGQTGDDAHGFFSKGGLILSVLALSYGVGIWATISLFPPWRKRFCQEYAEGLYT 410
Query: 391 GPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLM---LWSCFLFAEYLS 447
G ++ Y S+PFS +S A+ +++ ++ D F+ + LW+ F+ AE L
Sbjct: 411 GATMLIAYNTVSIPFSFISSAVAACVLYPLVLDPSNPDGMTFTYLLVALWTSFMLAEQLC 470
Query: 448 VALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSR 507
V LLV++S AA+ +SYI I+ L L SG +RS + + WL + G +Y + L
Sbjct: 471 VMFLLVMKSQLNAAIATSYILIVCLTLASGTIRSTKGLPGWLQENAKGVHTKYASSLLHT 530
Query: 508 QMFGDGRLRNMYSDKYSNCTIPHPFGCRYTDGASFLSERYG----HETGDFS 555
F R M + P P A FL ER G ET D +
Sbjct: 531 ATFLG---RKMNCPPANGIVCPQP--------ADFLMERLGRPNPQETTDIA 571
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 606 | ||||||
| FB|FBgn0039244 | 604 | CG11069 [Drosophila melanogast | 0.506 | 0.508 | 0.544 | 8e-110 | |
| MGI|MGI:1351659 | 652 | Abcg5 "ATP-binding cassette, s | 0.485 | 0.450 | 0.363 | 1.1e-60 | |
| UNIPROTKB|Q9H222 | 651 | ABCG5 "ATP-binding cassette su | 0.488 | 0.454 | 0.368 | 3.8e-60 | |
| UNIPROTKB|E2R684 | 656 | ABCG5 "Uncharacterized protein | 0.458 | 0.423 | 0.356 | 6.1e-60 | |
| UNIPROTKB|F1N3L2 | 649 | ABCG5 "Uncharacterized protein | 0.481 | 0.449 | 0.361 | 9.9e-60 | |
| RGD|620298 | 652 | Abcg5 "ATP-binding cassette, s | 0.422 | 0.392 | 0.373 | 1.2e-58 | |
| UNIPROTKB|F1NGV5 | 650 | ABCG5 "Uncharacterized protein | 0.5 | 0.466 | 0.313 | 1.3e-53 | |
| ZFIN|ZDB-GENE-050517-40 | 652 | abcg5 "ATP-binding cassette, s | 0.400 | 0.372 | 0.361 | 1.7e-50 | |
| UNIPROTKB|F1PS83 | 670 | ABCG8 "Uncharacterized protein | 0.429 | 0.388 | 0.355 | 2e-47 | |
| MGI|MGI:1914720 | 673 | Abcg8 "ATP-binding cassette, s | 0.427 | 0.384 | 0.360 | 7.1e-47 |
| FB|FBgn0039244 CG11069 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 179/329 (54%), Positives = 236/329 (71%)
Query: 11 EYYLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRAL 69
+Y L+ ++ H V+ G CF GN +AL+LK ++L V GEV+A+LGSKGSGKRAL
Sbjct: 7 DYVLEAHNIFHTTEVDGGGCFNGA-GN--SALVLKGVNLTVHSGEVMAILGSKGSGKRAL 63
Query: 70 LEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129
L+VISRR+ G TRG+++L+G+P+S LFQ CGYV +P LTV QTL+Y +
Sbjct: 64 LDVISRRADGATRGQVLLNGSPLSKALFQQRCGYVTQSCTFVPGLTVAQTLHYTPTI--- 120
Query: 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189
+S Y++++++RQVLADLALS VA + + L SE RR+ IG QLV+DPV+LLLDEPT
Sbjct: 121 --LSGYLKSSKVRQVLADLALSQVAHKRVEYLNISEARRLAIGIQLVRDPVMLLLDEPTH 178
Query: 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
LDPLS YL++S+LS+ AK+ +LL++EKPRSDV PFLDR +LCLG ++Y+G TR M
Sbjct: 179 GLDPLSAYLLISILSNTAKKTGCGILLSLEKPRSDVFPFLDRALFLCLGGVVYSGGTRAM 238
Query: 250 LEYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCA 309
LEYF IGFPCP+LENPLMYYLCLSTVDRRSR+RF+ES+ QI ALVE+F E P
Sbjct: 239 LEYFHGIGFPCPQLENPLMYYLCLSTVDRRSRDRFLESSQQIEALVERFSRE-TP----- 292
Query: 310 SSVIMDHGNSTIPSLTSHKMPLVNFSKPG 338
I D + + ++ S K+PL + KPG
Sbjct: 293 ---ISD---APLNNMGSGKVPLA-YGKPG 314
|
|
| MGI|MGI:1351659 Abcg5 "ATP-binding cassette, sub-family G (WHITE), member 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 111/305 (36%), Positives = 174/305 (57%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD+SL + G+++ +LGS GSGK LL+ IS R +GT GE+ ++G + FQ
Sbjct: 69 ILKDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQD 128
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
YV + SLTV +TL Y A L++ + + N ++ V+ +L+LS+VA +
Sbjct: 129 CFSYVLQSDVFLSSLTVRETLRYTAMLALCRSSADFY-NKKVEAVMTELSLSHVADQMIG 187
Query: 157 --NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
N ++ E RRV I QL++DP +++LDEPT LD ++ IV +L+ A+R R V
Sbjct: 188 SYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARR-DRIV 246
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLS 274
++T+ +PRS++ D+ A L G+L++ G ML +F + G+PCPE NP +Y+ L+
Sbjct: 247 IVTIHQPRSELFQHFDKIAILTYGELVFCGTPEEMLGFFNNCGYPCPEHSNPFDFYMDLT 306
Query: 275 TVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLT-SHKMPLVN 333
+VD +SRER IE+ ++ L FK E Y K ++ T+P++ K P
Sbjct: 307 SVDTQSREREIETYKRVQMLECAFK-ESDIYHKILENIERARYLKTLPTVPFKTKDPPGM 365
Query: 334 FSKPG 338
F K G
Sbjct: 366 FGKLG 370
|
|
| UNIPROTKB|Q9H222 ABCG5 "ATP-binding cassette sub-family G member 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 114/309 (36%), Positives = 178/309 (57%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQL 96
T ILKD+SL V G+++ +LGS GSGK LL+ +S R +GT GE+ ++G + +
Sbjct: 65 TRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLGRAGTFLGEVYVNGRALRREQ 124
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ YV L+ SLTV +TL+Y A L+I + ++ V+A+L+LS+VA R
Sbjct: 125 FQDCFSYVLQSDTLLSSLTVRETLHYTALLAIRRGNPGSFQK-KVEAVMAELSLSHVADR 183
Query: 157 NISE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I ++ E RRV I QL++DP ++L DEPT LD ++ IV +L A+R +
Sbjct: 184 LIGNYSLGGISTGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLVELARR-N 242
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL 271
R V+LT+ +PRS++ D+ A L G+LI+ G ML++F G+PCPE NP +Y+
Sbjct: 243 RIVVLTIHQPRSELFQLFDKIAILSFGELIFCGTPAEMLDFFNDCGYPCPEHSNPFDFYM 302
Query: 272 CLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLT--SHKM 329
L++VD +S+ER IE++ ++ + +K ++ + M H T+P + +
Sbjct: 303 DLTSVDTQSKEREIETSKRVQMIESAYKKSAICHKTLKNIERMKH-LKTLPMVPFKTKDS 361
Query: 330 PLVNFSKPG 338
P V FSK G
Sbjct: 362 PGV-FSKLG 369
|
|
| UNIPROTKB|E2R684 ABCG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 104/292 (35%), Positives = 171/292 (58%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD+SL V G+++ +LGS GSGK LL+ +S R GT GE+ ++G + + FQ
Sbjct: 69 ILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLRRKGTFLGEVFVNGRLLRREQFQD 128
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
YV L+ +LTV +TL+YAA L++ + + + R ++ V+ +L+LS+VA R
Sbjct: 129 CFSYVQQSDTLLSNLTVHETLHYAALLAVRHRSAGFYRK-KVETVMVELSLSHVADRLIG 187
Query: 157 --NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
N+ ++ E RRV I QL++DP ++L DEPT LD ++ IV +L+ A K R V
Sbjct: 188 NYNLGGISSGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLAELA-HKDRIV 246
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY---- 270
++T+ +PRS++ D+ A L G+L++ G ML++F +PCPE NP +Y
Sbjct: 247 IVTIHQPRSELFQLFDKIAILSYGELVFCGTPAEMLDFFNGCSYPCPEHSNPFDFYRKKL 306
Query: 271 LCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIP 322
+ L++VD +S+ER +E+ ++ + +K E A YR+ ++ T+P
Sbjct: 307 VDLTSVDTQSKERELETYKRVQMIESAYK-ESAIYRQTLENIERTKHLKTLP 357
|
|
| UNIPROTKB|F1N3L2 ABCG5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 469 (170.2 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 111/307 (36%), Positives = 174/307 (56%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQL 96
T ILKD+SL V G+++ +LGS GSGK LL+ +S R +GT GE+ ++G + +
Sbjct: 63 TRQILKDVSLYVESGQIMCILGSSGSGKTTLLDAMSGRLRRTGTLLGEVFVNGQELHREQ 122
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ YV L+ +LTV +TL Y A L+I + + ++ V+ +L+LS+VA +
Sbjct: 123 FQDCFSYVLQSDTLLSNLTVRETLNYTALLAIRRGSQSFFQK-KVEAVMTELSLSHVADQ 181
Query: 157 NISE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I ++ E RRV I QL++DP ++L DEPT LD ++ IV +L+ A+R
Sbjct: 182 LIGNYSFGGISHGERRRVSIAAQLLQDPKVMLFDEPTTGLDCMTANQIVVLLAELARR-D 240
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL 271
R V+LT+ +PRS++ D+ A L G+L++ G ML++F G+PCPE NP +Y+
Sbjct: 241 RIVILTIHQPRSELFQLFDKIAILSCGELVFCGTPVEMLDFFSGCGYPCPEHSNPFDFYM 300
Query: 272 CLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPL 331
L++VD +S+ER IE+ + V ++E E A Y K ++ T+P K+P
Sbjct: 301 DLTSVDTQSKEREIETYRR-VQMIEVAYRESAMYHKTMEAIERTKHLKTLP-----KIPF 354
Query: 332 VNFSKPG 338
PG
Sbjct: 355 KTRDSPG 361
|
|
| RGD|620298 Abcg5 "ATP-binding cassette, subfamily G (WHITE), member 5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 99/265 (37%), Positives = 158/265 (59%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD+SL + G+ + +LGS GSGK LL+ IS R +GT GE+ ++G + FQ
Sbjct: 69 ILKDVSLYIESGQTMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCELRRDQFQD 128
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
Y+ + SLTV +TL Y A L++ + + + ++ VL +L+LS+VA +
Sbjct: 129 CVSYLLQSDVFLSSLTVRETLRYTAMLALRSSSADFY-DKKVEAVLTELSLSHVADQMIG 187
Query: 157 --NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
N ++ E RRV I QL++DP +++LDEPT LD ++ IV +L A+R +R V
Sbjct: 188 NYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARR-NRIV 246
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLS 274
++T+ +PRS++ D+ A L G+L++ G ML +F + G+PCPE NP +Y+ L+
Sbjct: 247 IVTIHQPRSELFHHFDKIAILTYGELVFCGTPEEMLGFFNNCGYPCPEHSNPFDFYMDLT 306
Query: 275 TVDRRSRERFIESNNQIVALVEKFK 299
+VD +SRER IE+ ++ L F+
Sbjct: 307 SVDTQSREREIETYKRVQMLESAFR 331
|
|
| UNIPROTKB|F1NGV5 ABCG5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 444 (161.4 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
Identities = 100/319 (31%), Positives = 176/319 (55%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQL 96
T ILKD+S V G+++ +LG+ GSGK LL+ IS R + GE+ ++G + +
Sbjct: 64 TRQILKDVSFHVEGGQIMGILGNSGSGKTTLLDAISGRLEDKDSFFGEVYVNGQQLKKEQ 123
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
F+ YV L+ LT+E++L Y A L++ + +++ ++ V+A+L+LS++A +
Sbjct: 124 FRDCFSYVPQNDALLSFLTIEESLTYTALLALQKCSNNFIKK-KVDAVMAELSLSHIANK 182
Query: 157 NISE-----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I ++ E RRV I QL++DP ++LLDEPT LD L+ IVS+L A R
Sbjct: 183 IIGSQIYVGISGGERRRVSIAAQLLQDPKVMLLDEPTTGLDCLTANQIVSLLVELAHR-D 241
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL 271
R V++T+ +PRS++ D+ A + G++++ G M+ +F + G+ CPE NP +Y+
Sbjct: 242 RIVIITIHQPRSELFRLFDKIAIMSFGEMVFCGNPMEMITFFSNCGYSCPEQSNPFDFYV 301
Query: 272 CLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPL 331
L++VD RS+ER +E+ +++ ++ ++ +RK ++ +P + P
Sbjct: 302 DLTSVDTRSKERELETYSRVQVIISAYR-NSEIFRKVLETIERTRFMKELPPI-----PF 355
Query: 332 VNFSKPGGFQDYQWSFMSR 350
N PG W + R
Sbjct: 356 KNKDSPGDISKL-WFLLRR 373
|
|
| ZFIN|ZDB-GENE-050517-40 abcg5 "ATP-binding cassette, sub-family G (WHITE), member 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 421 (153.3 bits), Expect = 1.7e-50, Sum P(2) = 1.7e-50
Identities = 91/252 (36%), Positives = 151/252 (59%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQL 96
T IL ++S + G+++ +LG+ GSGK LL+ I+ R +SG +GE+ ++G + +
Sbjct: 69 TRQILNEVSFHLDSGQIMGILGNSGSGKTTLLDAIAGRIGNSGNLQGEVFVNGRKLKREQ 128
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR- 155
FQ YV +L+ LTVE+TL Y A L++ + +R ++ V+A+L+L +VA
Sbjct: 129 FQDCFSYVLQSDNLLSYLTVEETLTYTAQLALRKHSAEAIRK-KVTAVMAELSLGHVAHS 187
Query: 156 ----RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
R ++ E RRV I +QL++DP ++LLDEPT LD ++ IV +L+ A+R
Sbjct: 188 VIGGRVFPGISGGERRRVSIASQLLQDPKVILLDEPTTGLDSMTANQIVMLLAELARR-D 246
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL 271
R V++T+ +PRS++ +R A + G+L++ G M+++F S G+ CPE NP Y+
Sbjct: 247 RIVIVTIHQPRSELFRIFNRIAIMSQGELVFCGEPHKMVDFFSSCGYECPEYCNPFDIYV 306
Query: 272 CLSTVDRRSRER 283
L++VD R ER
Sbjct: 307 DLTSVDTRCSER 318
|
|
| UNIPROTKB|F1PS83 ABCG8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 443 (161.0 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
Identities = 96/270 (35%), Positives = 157/270 (58%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTT 100
++++S +VR G++LA++GS G G+ +LL+VI+ R G G+I ++G P SPQ+ +
Sbjct: 85 IQNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRDHGGKIKSGQIWINGKPSSPQVVRKY 144
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
+V L+P+LTV +TL + A L + S+ R+ R+ V+A+L L A +
Sbjct: 145 VAHVRQHDQLLPNLTVRETLAFVAQLRLPRTFSQAQRDQRVDDVIAELRLRQCANTRVGN 204
Query: 161 -----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++ E RRV IG QL+ +P +L+LDEPT LD + + +V LS AK +R VL
Sbjct: 205 AYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVKTLSRLAKG-NRLVL 263
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLST 275
+++ +PRSD+ D + G IY G + M++YF +G PCP NP +Y+ L++
Sbjct: 264 VSLHQPRSDIFRLFDLVLLMTSGTTIYLGAAQHMVQYFAGVGHPCPRYSNPADFYVDLTS 323
Query: 276 VDRRSRERFIESNNQIVALVEKF--KIEGA 303
+DRRSRE + + + +L F K+ G+
Sbjct: 324 IDRRSREHEVATREKAQSLAALFREKVRGS 353
|
|
| MGI|MGI:1914720 Abcg8 "ATP-binding cassette, sub-family G (WHITE), member 8" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 7.1e-47, Sum P(2) = 7.1e-47
Identities = 97/269 (36%), Positives = 160/269 (59%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTT 100
++++S +VR G++LA++GS G G+ +LL+VI+ R G G+I ++G P +PQL +
Sbjct: 89 IRNLSFKVRSGQMLAIIGSSGCGRASLLDVITGRGHGGKMKSGQIWINGQPSTPQLVRKC 148
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
+V L+P+LTV +TL + A + + S+ R+ R+ V+A+L L A +
Sbjct: 149 VAHVRQHDQLLPNLTVRETLAFIAQMRLPRTFSQAQRDKRVEDVIAELRLRQCANTRVGN 208
Query: 161 -----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++ E RRV IG QL+ +P +L+LDEPT LD + + +V+ LS AK +R VL
Sbjct: 209 TYVRGVSGGERRRVSIGVQLLWNPGILILDEPTSGLDSFTAHNLVTTLSRLAKG-NRLVL 267
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLST 275
+++ +PRSD+ D + G IY G + M++YF SIG PCP NP +Y+ L++
Sbjct: 268 ISLHQPRSDIFRLFDLVLLMTSGTPIYLGAAQQMVQYFTSIGHPCPRYSNPADFYVDLTS 327
Query: 276 VDRRSRERFIESNNQIVALVEKF--KIEG 302
+DRRS+ER + + + +L F K++G
Sbjct: 328 IDRRSKEREVATVEKAQSLAALFLEKVQG 356
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 606 | |||
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 7e-64 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 3e-45 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-37 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-35 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-28 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 8e-26 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-24 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-24 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-23 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-22 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-21 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-21 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-20 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-20 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-20 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-20 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-20 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-20 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 5e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-19 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-19 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-19 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 5e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-18 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-18 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-18 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-17 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-17 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-17 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-17 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-17 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 6e-17 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-17 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 7e-17 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 9e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-17 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-16 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-16 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-16 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-16 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-16 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-16 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-15 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-15 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-15 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 8e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 8e-15 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 9e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 9e-15 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-14 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-14 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-14 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-14 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-14 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-14 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-14 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-14 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 7e-14 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 7e-14 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 7e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-13 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-13 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-13 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-13 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 6e-13 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-13 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 9e-13 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-13 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-12 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-12 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-12 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 4e-12 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-12 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-12 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-12 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 8e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-11 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-11 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-11 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-11 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-11 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-11 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 6e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-11 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-11 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-10 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-10 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-10 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-10 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-10 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-10 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-10 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-10 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-10 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 7e-10 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-10 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-09 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-09 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-09 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-09 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-09 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-09 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-09 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-09 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 8e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-08 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-08 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-08 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-08 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-07 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-07 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-07 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 5e-07 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-07 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 7e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-06 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-06 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 9e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-05 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-05 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-05 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-05 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 6e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 9e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-04 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 3e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-04 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 4e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 8e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.001 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.001 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.001 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.002 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.003 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.003 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 0.003 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 0.004 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 7e-64
Identities = 91/228 (39%), Positives = 127/228 (55%), Gaps = 7/228 (3%)
Query: 20 HPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--S 77
+ G + + A IL D+SL V G+V+A+LGS GSGK LL+ IS R
Sbjct: 3 VLPWWDVGLKAK---NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEG 59
Query: 78 SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR 137
GTT G+I+ +G P P FQ YV L+P LTV +TL Y A L + + S +R
Sbjct: 60 GGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR 119
Query: 138 NARIRQV-LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R+ V L DLAL+ + + ++ E RRV I QL+ DP +L+LDEPT LD +
Sbjct: 120 KKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179
Query: 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+VS LS A+R R V+LT+ +PRSD+ DR L G+++Y+G
Sbjct: 180 LNLVSTLSQLARRN-RIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 169 bits (430), Expect = 3e-45
Identities = 124/506 (24%), Positives = 204/506 (40%), Gaps = 50/506 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTR-GEIILDGTPMSPQLFQT 99
+LK++S +PGE+LAV+GS G+GK L+ ++ R G G ++L+G P+ + +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
YV IP+LTV + L + AHL + +V++ + R+ +VL L L A I
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 160 E------LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
L+ E +R+ ++L+ DP LL DEPT LD Y +V +L A+ K +
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKT 218
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYL-C 272
++ T+ +P S++ D+ + G + Y G + +F +G PCPE NP +Y+
Sbjct: 219 IICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQV 278
Query: 273 LSTVDRR---SRERF----------------IESNNQIVALVEKF--KIEGAPYRKCASS 311
L+ + SRER + + N E +S
Sbjct: 279 LAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNAS 338
Query: 312 VIMDHG-------NSTIPSLTSHKMPLVNFSKPG--------GFQDYQWSFMSRNGLIFS 356
S + K+ L+ G Q + NG +F
Sbjct: 339 WWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFL 398
Query: 357 SISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLP-FSILSVGAASW 415
++ F + F F + +E + GLY + L LP F IL S
Sbjct: 399 FLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTS- 457
Query: 416 IIFQATGLSTSTDLFQFSLMLWS-CFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVL 474
I + GL + F L L + A + S A V I FL+
Sbjct: 458 ITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLF 517
Query: 475 GSGYLRSFRSMAEWLVYMSYGTQARY 500
G ++ + S+ + ++SY + RY
Sbjct: 518 GGFFI-NSDSIPVYFKWLSYLSWFRY 542
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-37
Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 34/204 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDGTPMSPQLFQTT 100
+LK++S + +PGE+ A++G G+GK LL ++ RR+ GE++++G P+ + F+
Sbjct: 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
GYV L P+LTV +TL +AA L R +S
Sbjct: 84 IGYVPQDDILHPTLTVRETLMFAAKL-----------------------------RGLSG 114
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220
E +RV I +LV +P LL LDEPT LD S ++S+L A R ++ ++ +
Sbjct: 115 ---GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQ 170
Query: 221 PRSDVLPFLDRTAYLCLGDLIYAG 244
P S++ D+ L G +IY G
Sbjct: 171 PSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 4e-35
Identities = 73/230 (31%), Positives = 108/230 (46%), Gaps = 15/230 (6%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G +TAL +S EV PGE+ +LG G+GK LL++++ T GEI++ G +
Sbjct: 14 YGGDKTAL--DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVV 70
Query: 94 --PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P + GYV L P LTV + L + A L +S+ RI ++L L
Sbjct: 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLE 127
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ A + + L+ +R+ I L+ DP LL+LDEPT LDP S I +L AK
Sbjct: 128 DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGG 187
Query: 212 RAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258
+LL+ +E + DR L G +I G + E F G
Sbjct: 188 VTILLSTHILE----EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 36/209 (17%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDGTPMSPQL 96
+L +IS V+PG + A++G G+GK LL+V++ R+++G GEI+++G P+ +
Sbjct: 18 GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL-DKN 76
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ + GYV + P+LTV + L ++A
Sbjct: 77 FQRSTGYVEQQDVHSPNLTVREALRFSA-------------------------------- 104
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ L+ + +R+ IG +L P +L LDEPT LD + Y IV L A +A+L
Sbjct: 105 LLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA-DSGQAILC 163
Query: 217 TMEKPRSDVLPFLDRTAYLCL-GDLIYAG 244
T+ +P + + DR L G +Y G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 135/566 (23%), Positives = 231/566 (40%), Gaps = 84/566 (14%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILDGTPMSPQ 95
IQ IL ++ PGE+LAVLG GSGK LL ++ R G G I+ + + Q
Sbjct: 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQ 137
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--- 152
+ + T G+V L P LTV +TL + + L + +++ + V+++L L+
Sbjct: 138 ILKRT-GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196
Query: 153 --VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ I ++ E +RV I +++ +P LL+LDEPT LD + Y +V L S A+ K
Sbjct: 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-K 255
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270
+ ++ +M +P S V D L G ++ G + YF S+GF NP +
Sbjct: 256 GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315
Query: 271 LCLST----VDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTS 326
L L+ D S ER E N +LV + AP K A + S P +
Sbjct: 316 LDLANGVCQTDGVS-ER--EKPNVKQSLVASYNTLLAPKVKAAIEM------SHFPQANA 366
Query: 327 HKMPLVNFSKPGGFQDY--------QWSFMSRNGL------------IFSSISGS----- 361
+ + + D Q+S + + L +F I+ +
Sbjct: 367 RFVGSASTKEHRS-SDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGL 425
Query: 362 -----------------YFISTFI-------AAFTFPVHRTRYYQEAQEGLYSGPLFILT 397
+FIS F + F FP R + +E G+Y+ + +
Sbjct: 426 MWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMA 485
Query: 398 YIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLM-LWSCFLFAEYLSVALLLVVES 456
I LP ++ + + GL F +L+ L L ++ L +AL +
Sbjct: 486 RIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545
Query: 457 GFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDG-RL 515
A+ + + + F++ G Y+ S W+ Y+S Y L +G+G R+
Sbjct: 546 AKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYIS---TTFYSYRLLINVQYGEGKRI 602
Query: 516 RNMYSDKYSNCTIPHPF---GCRYTD 538
++ C++PH C++ +
Sbjct: 603 SSLLG-----CSLPHGSDRASCKFVE 623
|
Length = 659 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 8e-26
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SP 94
L DISL ++ GE + ++G GSGK LL +++ G T GE+++DG + S
Sbjct: 12 GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSL 70
Query: 95 QLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGP---QVSRYVRNARIRQVLADLA 149
+ + G V N TVE+ ++ G + R+ + L +
Sbjct: 71 KELRRKVGLVFQNPDDQFF-GPTVEE------EVAFGLENLGLPEEEIEERVEEALELVG 123
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L + R+ L+ + +RV I L DP +LLLDEPT LDP ++ +L
Sbjct: 124 LEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE 183
Query: 210 KSRAVLLT--MEKPRSDVLPFLDRTAYL 235
+++T ++ +L DR L
Sbjct: 184 GKTIIIVTHDLD----LLLELADRVIVL 207
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 17/210 (8%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPM 92
G + LK +SL + GE +A++G GSGK LL ++ R T GE+ +DGT +
Sbjct: 12 GGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGTDI 68
Query: 93 S-------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
S + G+V +L+P LT + + L+ V + R R ++L
Sbjct: 69 SKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELL 125
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
+ L + SEL+ + +RV I L DP ++L DEPT NLD + ++ +L
Sbjct: 126 ERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRE 185
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235
K +++ P ++ + DR L
Sbjct: 186 LNKEAGTTIVVVTHDP--ELAEYADRIIEL 213
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 11/184 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDGTP---MSPQL 96
IL D+S + GE+ +LG GSGK LL+ ++ + GE++LDG +SP+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKS---GEVLLDGKDIASLSPKE 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYY--AAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
YV LTV + + HL + + S+ + + L L L ++A
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDE-EIVEEALELLGLEHLA 132
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R + EL+ E +RV+I L ++ +LLLDEPT +LD ++ +L + K V
Sbjct: 133 DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTV 192
Query: 215 LLTM 218
++ +
Sbjct: 193 VMVL 196
|
Length = 258 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 20/187 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSP--- 94
LKD++LE+ GE +A++G GSGK LL ++ G T GE++++G ++
Sbjct: 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL-----GGLDKPTSGEVLINGKDLTKLSE 74
Query: 95 ----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+L + G+V +L+P LTV + + ++ S R ++L L L
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGL 131
Query: 151 S-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ ++ SEL+ + +RV I L+ +P ++L DEPT NLD + ++ +L K
Sbjct: 132 EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191
Query: 210 KSRAVLL 216
+ + +++
Sbjct: 192 RGKTIIM 198
|
Length = 226 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 4e-24
Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+L+DISL V GE+ A++G G+GK +A+L ++ S GEI + G P+ +
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS-----GEIKIFGKPVRKRRK 73
Query: 98 QTTCGYVNHRTDLIPS--LTVEQTLYYAAHLSIGPQVSRY--VRNARIRQVLADLALSNV 153
+ GYV ++ + S +TV+ + + G R ++ + L + + ++
Sbjct: 74 RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKG-WFRRLNKKDKEKVDEALERVGMEDL 132
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213
R I EL+ + +RV++ L ++P LLLLDEP +D I +L +++ +
Sbjct: 133 RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKT 191
Query: 214 VLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAGPT 246
VL+ V+ + DR +CL LI +GP
Sbjct: 192 VLMVTHDL-GLVMAYFDRV--ICLNRHLIASGPP 222
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 6e-24
Identities = 64/213 (30%), Positives = 108/213 (50%), Gaps = 23/213 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+L+D+S EV+PGE LA++G G+GK +A+L ++ T G I + G P +
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----TSGSIRVFGKP--LEKE 66
Query: 98 QTTCGYVNHRTDLIPS--LTVEQT----LYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ GYV R + ++V LY H + ++S+ + A++ + L + LS
Sbjct: 67 RKRIGYVPQRRSIDRDFPISVRDVVLMGLY--GHKGLFRRLSKADK-AKVDEALERVGLS 123
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+A R I EL+ + +RV++ LV+DP LLLLDEP +DP + I +L +R+
Sbjct: 124 ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREG 182
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+L+ VL + DR L ++ +G
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLN-RTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 3e-23
Identities = 73/243 (30%), Positives = 125/243 (51%), Gaps = 15/243 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQT 99
IL ++ V+PG + A++G+ G+GK LL V++ R + T G+ +++G P+ FQ
Sbjct: 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSS-FQR 836
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
+ GYV + +P+ TV ++L ++A+L VS+ + + +V+ L + + A +
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 160 E----LTPSEHRRVVIGTQLVKDPVLLL-LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
L + +R+ IG +LV P LLL LDEPT LD + + I ++ A +A+
Sbjct: 897 VPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAI 955
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLG-DLIYAGP----TRLMLEYFRSIGFP-CPELENPLM 268
L T+ +P + + DR L G +Y G + ++ YF G P CPE NP
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAE 1015
Query: 269 YYL 271
+ L
Sbjct: 1016 WML 1018
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 7e-22
Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 22/170 (12%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ +G+++ L D+SL V PGE LA+LG G GK LL +I+ G GEI++D
Sbjct: 8 KTYGSVR---ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIA----GLERPDSGEILID 60
Query: 89 GTPMS---PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
G ++ P+ + G V ++ L P LTV + + + L + V + AR+R+
Sbjct: 61 GRDVTGVPPE--RRNIGMVFQDYA--LFPHLTVAENIAFG--LKLR-GVPKAEIRARVRE 113
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+L + L + R EL+ + +RV + L ++P LLLLDEP LD
Sbjct: 114 LLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDA 163
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 24/218 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQL-- 96
LKD+SLE+ GE + ++G GSGK LL++++ G T GE+++DG S +
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLN----GLLKPTSGEVLVDGLDTSSEKSL 74
Query: 97 --FQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ G V N L TVE + + ++G + R R+ + L + L
Sbjct: 75 LELRQKVGLVFQNPDDQLF-GPTVEDEVAFG-LENLG--LPREEIEERVAEALELVGLEE 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ R L+ + +RV I L P +LLLDEPT LDP ++ +L + +
Sbjct: 131 LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGK 190
Query: 213 AVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+++ +E VL + DR L G ++ G
Sbjct: 191 TIIIVTHDLE----LVLEYADRVVVLDDGKILADGDPA 224
|
Length = 235 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 6e-21
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 22/211 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDG--TPMSPQL 96
L +SL + PG + +LG G+GK L+ +++ SSGT I +DG PQ
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGT----IRIDGQDVLKQPQK 69
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ GY+ + P+ TV + L Y A L + AR+ +VL + L + A++
Sbjct: 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKK 126
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
I L+ RRV I LV DP +L++DEPT LDP ++LS + R V+L
Sbjct: 127 KIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG--EDRIVIL 184
Query: 217 T---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ +E DV ++ A L G L++ G
Sbjct: 185 STHIVE----DVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 8e-21
Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 11/212 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR---RSSGTTR--GEIILDGTPMSPQL 96
IL D+S +V PGE A++G G+GK LL +++ SSG G G +L
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGE-TIFEL 104
Query: 97 FQTTCGYVNH--RTDLIPSLTVEQTLYYAAHLSIG--PQVSRYVRNARIRQVLADLALSN 152
+ G V+ TV + SIG + A + +L L +
Sbjct: 105 RKRI-GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+A R L+ E RRV+I LVKDP LL+LDEP LD ++ +++ L A
Sbjct: 164 LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGA 223
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
LL + ++ P L G+++ G
Sbjct: 224 PALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 1e-20
Identities = 72/211 (34%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQLFQTT 100
L D+S VRPG +A+LG G+GK L +++R G+I + G + P+
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALAR 75
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
G V + L L+V Q L Y A L +SR ARI ++LA L L+ A + E
Sbjct: 76 LGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARARIAELLARLGLAERADDKVRE 132
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL----L 216
L RRV I L+ P LLLLDEPTV LDP S I + + + A+ + +VL L
Sbjct: 133 LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHL 192
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
E D L L R G ++ G
Sbjct: 193 VDEIEADDRLVVLHR------GRVLADGAAA 217
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-20
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 30/184 (16%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FG+ + +LKD++L++ GE + +LG G GK LL +I +G T GEI++D
Sbjct: 11 KSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI----AGLEEPTSGEILID 63
Query: 89 GTPMS---PQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G ++ P+ +FQ Y L P +TV + + + L V + +
Sbjct: 64 GRDVTDLPPEKRGIAMVFQN---YA-----LYPHMTVYENIAFGLKLR---GVPKAEIDK 112
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R+++V L L ++ R +L+ + +RV + LV+ P + LLDEP NLD L+
Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 200 VSML 203
S +
Sbjct: 173 RSEI 176
|
Length = 338 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 2e-20
Identities = 63/205 (30%), Positives = 91/205 (44%), Gaps = 38/205 (18%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG- 89
FG + AL D+S VRPGE+ ++G G+GK L +IS G T G ++ DG
Sbjct: 10 FGGL-VAL--DDVSFSVRPGEIHGLIGPNGAGKTTLFNLIS----GFLRPTSGSVLFDGE 62
Query: 90 --TPMSPQL---------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS--RYV 136
T + P FQ L P LTV + + AA G + R
Sbjct: 63 DITGLPPHEIARLGIGRTFQIP--------RLFPELTVLENVMVAAQARTGSGLLLARAR 114
Query: 137 R-----NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
R R ++L + L+++A R EL+ + RR+ I L DP LLLLDEP L
Sbjct: 115 REEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL 174
Query: 192 DPLSTYLIVSMLSSYAKRKSRAVLL 216
+P T + ++ + + VLL
Sbjct: 175 NPEETEELAELIRE-LRERGITVLL 198
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-20
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 12/185 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------PQ 95
L I++ + GE + ++G G+GK LL++I + T G I ++G +S P
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPY 75
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + G V L+P V + + +A ++ V R+ L + LS+ R
Sbjct: 76 LRRKI-GVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHR 131
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+EL+ E +RV I +V P +L+ DEPT NLDP +T+ I+++L K + V+
Sbjct: 132 ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVV 191
Query: 216 LTMEK 220
T K
Sbjct: 192 ATHAK 196
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-20
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 16/208 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQL 96
LK++SLEV G+ +LG GSGK LLE I+ G G+I+L+G T + P+
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIA----GFIKPDSGKILLNGKDITNLPPEK 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
YV L P +TV + + Y + ++ ++ L + ++ R
Sbjct: 71 RDI--SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEI---ERKVLEIAEMLGIDHLLNR 125
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ E +RV I LV +P +LLLDEP LD + + L +++ +L
Sbjct: 126 KPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKK-IRKEFGVTVL 184
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ + D+ A + G LI G
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 4e-20
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-- 94
+IL D++L + G++ A++G GSGK LL +I G++ L+G P
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGQETPPLN 66
Query: 95 -----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
+ + GY+ LI + TVE+ L ++S+ + + ++ L +
Sbjct: 67 SKKASKFRREKLGYLFQNFALIENETVEENLDLGL---KYKKLSKKEKREKKKEALEKVG 123
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L+ ++ I EL+ E +RV + ++K P L+L DEPT +LDP + ++ +L
Sbjct: 124 LNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDE 183
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 4e-20
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 12/189 (6%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS- 93
G++QT +L ++S + GE++A++GS GSGK LL ++ + T+ G++I +G PMS
Sbjct: 18 GSVQTD-VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS-GDVIFNGQPMSK 75
Query: 94 ------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
+L G++ L+P T + + A L IG + N+R ++LA
Sbjct: 76 LSSAAKAELRNQKLGFIYQFHHLLPDFTALENV--AMPLLIG-KKKPAEINSRALEMLAA 132
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
+ L + A SEL+ E +RV I LV +P L+L DEPT NLD + I +L
Sbjct: 133 VGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 192
Query: 208 KRKSRAVLL 216
+ + A L+
Sbjct: 193 RLQGTAFLV 201
|
Length = 233 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-20
Identities = 69/251 (27%), Positives = 130/251 (51%), Gaps = 20/251 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDGTPMSPQLFQTT 100
+L++++ RPG + A++G G+GK L++V++ R++ G G+I + G P + F
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----VAR 155
GY P +TV ++L Y+A L + +VS+ + + +V+ + L N V
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++ L+ + +R+ I +LV +P ++ +DEPT LD + +++ + + R V+
Sbjct: 1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1073
Query: 216 LTMEKPRSDVLPFLDRTAYLCL----GDLIYAGP----TRLMLEYFRSI-GFP-CPELEN 265
T+ +P D+ D L L G +IY+GP + ++EYF +I G P E N
Sbjct: 1074 CTIHQPSIDIFEAFDE---LLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYN 1130
Query: 266 PLMYYLCLSTV 276
P + L +S++
Sbjct: 1131 PATWMLEVSSL 1141
|
Length = 1470 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 8e-20
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 45/182 (24%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDGTP---MSPQL 96
+L D+SL + GE++ +LG G+GK LL+ ++ + S GEI+LDG +SP+
Sbjct: 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS---GEILLDGKDLASLSPKE 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
YV Q L L L+++A R
Sbjct: 71 LARKIAYV-------------------------------------PQALELLGLAHLADR 93
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+EL+ E +RV++ L ++P +LLLDEPT +LD ++ +L A+ + + V++
Sbjct: 94 PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVM 153
Query: 217 TM 218
+
Sbjct: 154 VL 155
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-19
Identities = 53/173 (30%), Positives = 86/173 (49%), Gaps = 29/173 (16%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FG+ + DISL+++ GE + +LG G GK LL +I+ G + GEI+LD
Sbjct: 13 KSFGDFT---AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIA----GFEQPSSGEILLD 65
Query: 89 GTPM---SPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G + P+ +FQ Y L P +TVE+ + + L + ++ + A
Sbjct: 66 GEDITDVPPEKRPIGMVFQ---SYA-----LFPHMTVEENVAFG--LKVRKKLKKAEIKA 115
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ + L + L A R +L+ + +RV + LV +P +LLLDEP LD
Sbjct: 116 RVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
|
Length = 352 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 1e-19
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 15/211 (7%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQ-- 98
+ D+SL V GE+ +LG G+GK L++++ T G ++G +
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAAR 74
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
+ GY L LTV + L + A L G + + + +L L L++ A +
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK-G--LPKSEIKEEVELLLRVLGLTDKANKRA 131
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT- 217
L+ R++ + L+ P +LLLDEPT LDP S I ++ RK R+++LT
Sbjct: 132 RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV--RKGRSIILTT 189
Query: 218 --MEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
M++ ++ L DR A + G L G
Sbjct: 190 HSMDE--AEALC--DRIAIMSDGKLRCIGSP 216
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-19
Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 16/216 (7%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G+ A+ +D+S E GE+ +LG G+GK LL +I+ G++ +DG
Sbjct: 11 YGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTV 67
Query: 94 --PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P + G + L LT + L Y A L+ +SR ARI ++ L L
Sbjct: 68 RDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLL 124
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
R + E + ++V I LV DP +L+LDEPT LD + T K +
Sbjct: 125 EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD-IRTRRKFHDFIKQLKNEG 183
Query: 212 RAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
RAV+ + M+ +V DR L G+++ G
Sbjct: 184 RAVIFSSHIMQ----EVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-19
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
L DIS V GE+ +LG G+GK R +L +I GE++ DG P+
Sbjct: 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-----PDSGEVLFDGKPLDI-AA 68
Query: 98 QTTCGYVNHRTDLIPSLTV-EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ GY+ L P + V +Q +Y A + + +R RI + L L LS A +
Sbjct: 69 RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR----RRIDEWLERLELSEYANK 124
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ EL+ ++V ++ DP LL+LDEP LDP++ L+ ++ R + V+L
Sbjct: 125 RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVIL 183
Query: 217 T---MEK 220
+ ME
Sbjct: 184 STHQMEL 190
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR----RSSGTTRGEIILDG 89
+G+ LKDISL++ GE+ A++G G GK LL +++R GE++LDG
Sbjct: 10 YGDKH---ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66
Query: 90 TP-----MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN----AR 140
+ + G V + + P ++ +++ G ++ R
Sbjct: 67 KDIYDLDVDVLELRRRVGMVFQKPNPFP-GSI------YDNVAYGLRLHGIKLKEELDER 119
Query: 141 IRQVLADLALS-NVARR-NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
+ + L AL V R + L+ + +R+ + L +P +LLLDEPT LDP+ST
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAK 179
Query: 199 IVSMLSSYAKRKSRAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
I +++ K +++ M++ DRTA+L G L+ GPT
Sbjct: 180 IEELIAELKKE--YTIVIVTHNMQQ----AARVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-19
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 19/204 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMS---- 93
+L DI+LE+ PGE++ + G GSGK LL +I G R G + + G +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLI-----GGLRSVQEGSLKVLGQELYGASE 74
Query: 94 PQLFQT--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+L Q GY+ +L+ LT Q + A L P +S R R +L + L
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLG 132
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ L+ + +RV I LV P L+L DEPT LD S +V ++ A+ +
Sbjct: 133 DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG 192
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYL 235
+L+ R +L DR ++
Sbjct: 193 CTILIVTHDNR--ILDVADRIVHM 214
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 83.2 bits (207), Expect = 1e-18
Identities = 53/181 (29%), Positives = 76/181 (41%), Gaps = 49/181 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMS--PQL 96
L DISL V GE+ +LG G+GK L+++I + S GEI + G + P+
Sbjct: 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS----GEIKVLGKDIKKEPEE 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ GY+ L +LTV + L S G ++Q LA LA +
Sbjct: 71 VKRRIGYLPEEPSLYENLTVRENLKL----SGG-----------MKQRLA-LAQA----- 109
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ DP LL+LDEPT LDP S +L K + +LL
Sbjct: 110 ------------------LLHDPELLILDEPTSGLDPESRREFWELLRELKKEG-KTILL 150
Query: 217 T 217
+
Sbjct: 151 S 151
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-18
Identities = 60/183 (32%), Positives = 90/183 (49%), Gaps = 15/183 (8%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
A IL +ISL VR GE +A+ G G GK LL++++ S T+ G ++ +G +S P+
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS-GTLLFEGEDVSTLKPE 73
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR--QVLADLAL-SN 152
++ Y L TVE L I P R R R +LA AL +
Sbjct: 74 AYRQQVSYCAQTPALFGD-TVEDNL-------IFPWQIRNRRPDRAAALDLLARFALPDS 125
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ +NI+EL+ E +R+ + L P +LLLDE T LD + I M+ Y + ++
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 213 AVL 215
AVL
Sbjct: 186 AVL 188
|
Length = 223 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 18/224 (8%)
Query: 34 FGNIQTALI-LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92
+ L D+SLE+ GE+ ++G G+GK LL +I+ T+ G + +DG +
Sbjct: 12 GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS-GSVFVDGQDL 70
Query: 93 SP------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ + + G + +L+ S TV + + + L+ V + R+ ++L
Sbjct: 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLE 127
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+ LS+ A R ++L+ + +RV I L +P +LL DE T LDP +T I+ +L
Sbjct: 128 LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDI 187
Query: 207 AKRKSRAVLL---TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ ++L ME + DR A L G L+ G
Sbjct: 188 NRELGLTIVLITHEMEVVKR----ICDRVAVLDQGRLVEEGTVS 227
|
Length = 339 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 1e-17
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM- 92
FG+ +LK I L V+ GEV+ ++G GSGK LL I+ G II+DG +
Sbjct: 10 FGDFH---VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLT 65
Query: 93 --SPQLFQ--TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-------ARI 141
+ + G V + +L P LTV + ++++ P V+ R
Sbjct: 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLE------NITLAP---IKVKGMSKAEAEERA 116
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
++L + L++ A ++L+ + +RV I L +P ++L DEPT LDP
Sbjct: 117 LELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 1e-17
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 32/231 (13%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG-- 89
G IQ L+ +SLEV GE++A+LG G+GK LL+ I G G II DG
Sbjct: 14 GKIQ---ALRGVSLEVERGEIVALLGRNGAGKTTLLKTI----MGLVRPRSGRIIFDGED 66
Query: 90 -TPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR--IRQVL 145
T + P + + YV + P LTVE+ L + Y R + + L
Sbjct: 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENL----------LLGAYARRDKEAQERDL 116
Query: 146 ADL-----ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
++ L + L+ E + + I L+ P LLLLDEP+ L P I
Sbjct: 117 EEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIF 176
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+ K +LL + R L DR L G ++ +G +L
Sbjct: 177 EAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-17
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQLF 97
IL D+SL++ GE++A+ G G+GK L ++++ G + G I+L+G P+ +
Sbjct: 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILA----GLIKESSGSILLNGKPIKAKER 69
Query: 98 QTTCGYV-NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ + GYV + + +V + L ++ N + VL DL L + R
Sbjct: 70 RKSIGYVMQDVDYQLFTDSVREELLLGL-----KELDAG--NEQAETVLKDLDLYALKER 122
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ L+ + +R+ I L+ LL+ DEPT LD
Sbjct: 123 HPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 84.7 bits (209), Expect = 1e-17
Identities = 49/210 (23%), Positives = 91/210 (43%), Gaps = 9/210 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDGTPMS--PQLF 97
+L D+SLE+ GE+LA++G G GK LL I+ +++G T G I + ++ P
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT-GRIAIADRDLTHAPP-H 77
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ + L P L VE + + ++ + R+ L + L + A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR---AQKMPKADIAERVADALKLVGLGDAAAHL 134
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
++L+ +R+ I + +P +LLLDEP LD + +++ + +L
Sbjct: 135 PAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILC 194
Query: 218 MEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + D L D+ + G L G +
Sbjct: 195 VTHDQDDALTLADKAGIMKDGRLAAHGEPQ 224
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQ--L 96
+ + +S + GE L V G G GK LL +++ G R GE+ +GT ++ Q
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILA----GLLRPDSGEVRWNGTALAEQRDE 70
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
Y+ H L P L+ + L++ A + G Q + I LA + L+
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRT-------IEDALAAVGLTGFEDL 123
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
++L+ + RR+ + + L +LDEPT LD L+ +L ++ R VLL
Sbjct: 124 PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGG-IVLL 182
Query: 217 TMEKPRSDV 225
T + V
Sbjct: 183 TTHQDLGLV 191
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 49/198 (24%), Positives = 96/198 (48%), Gaps = 16/198 (8%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ + AL KD++LE+ GE++A++G G+GK LL ++ T GEI+ +G
Sbjct: 11 KTYPGGHQAL--KDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQ 67
Query: 92 MSP------QLFQTTCGYVNHRTDLIPSLTVEQTL------YYAAHLSIGPQVSRYVRNA 139
++ + + G + + +L+P L+V + + Y + S+ S+ + A
Sbjct: 68 ITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-A 126
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ L + + + A + S L+ + +RV I LV+ P ++L DEP +LDP S +
Sbjct: 127 QALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKV 186
Query: 200 VSMLSSYAKRKSRAVLLT 217
+ +L + V++
Sbjct: 187 MDILKDINQEDGITVIVN 204
|
Length = 258 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-17
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------- 94
L ++SLE+ GE L ++G GSGK L +++ ++ G I+LDG P++P
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSS-GSILLDGKPLAPKKRAKAF 80
Query: 95 ----QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
Q+ FQ +N P TV + L + + RI ++L +
Sbjct: 81 YRPVQMVFQDPYSSLN------PRRTVGRILSEPLRPHGLSKSQQ-----RIAELLDQVG 129
Query: 150 LSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L R EL+ + +R+ I L+ +P LL+LDEPT LD
Sbjct: 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-17
Identities = 59/238 (24%), Positives = 111/238 (46%), Gaps = 16/238 (6%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
+V+ N + AL K+I+L + PGE +A++G G+GK LL I+R + G I+L+GT
Sbjct: 8 SKVYPNGKQAL--KNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-VEPSSGSILLEGT 64
Query: 91 PMSP------QLFQTTCGYVNHRTDLIPSLTVEQTL---YYAAHLSIGPQVSRYVRNARI 141
++ + + G + +LI LTV + + + + R+ +
Sbjct: 65 DITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE 124
Query: 142 R--QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R L + L++ A + +L+ + +RV I L + P L+L DEP +LDP ++ +
Sbjct: 125 RALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY-FRSI 256
+ L K V++ + + + DR L G++++ G + + R I
Sbjct: 185 MDYLKRINKEDGITVIINLHQ-VDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLRHI 241
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 7e-17
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 28/230 (12%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR----RSSGTTRGEIILDG 89
FG ++ +L ++LE+ + A++G GSGK LL V +R GE+ LDG
Sbjct: 13 FGQVE---VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69
Query: 90 T---PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-----ARI 141
M + V + IP+L++ + ++++G +++R V++ R+
Sbjct: 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE------NVALGLKLNRLVKSKKELQERV 123
Query: 142 RQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
R L L + + + +L+ + +R+ I L P +LL DEPT NLDP +T
Sbjct: 124 RWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
Query: 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
I S+ K+ VL+T ++ + D A+L G ++ GPTR
Sbjct: 184 KIESLFLEL-KKDMTIVLVTHFPQQAARIS--DYVAFLYKGQIVEWGPTR 230
|
Length = 250 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 7e-17
Identities = 55/182 (30%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTP---MSP- 94
+LK + L+VR GE+LA++G GSGK LL +I R S GE+++DG +S
Sbjct: 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS----GEVLIDGEDISGLSEA 70
Query: 95 --QLFQTTCGYVNHRTDLIPSLTVEQT----LYYAAHLSIGPQVSRYVRNARIRQVLADL 148
+ G + L SLTV + L H ++S + + L +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLRE--HT----RLSEEEIREIVLEKLEAV 124
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
L +EL+ +RV + L DP LLL DEPT LDP+++ +I ++ S K
Sbjct: 125 GLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK 184
Query: 209 RK 210
Sbjct: 185 EL 186
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 7e-17
Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 29/224 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------ 95
LKD+SL + PGE +A++G G+GK LL ++ T G +++DGT ++
Sbjct: 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-TSGSVLIDGTDINKLKGKALR 74
Query: 96 --------LFQTTCGYVNHRTDLIPSLTVEQTL---YYAAHLSIGPQVSRYVRNARIR-- 142
+FQ LI L+V + + + + + + R
Sbjct: 75 QLRRQIGMIFQ------QFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRAL 126
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
L + L + A + +L+ + +RV I L++ P L+L DEP +LDP S+ ++ +
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
L + + V++++ + + DR L G +++ GP
Sbjct: 187 LKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPP 229
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 7e-17
Identities = 72/239 (30%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR-GEIILDGT-PMSPQ- 95
+L I LEV+PGEV+A++G GSGK LL I+ + +GT R G+I +D +S Q
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQK 77
Query: 96 -----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLA 146
L Q G+V +L P TV + + GP + + AR R++LA
Sbjct: 78 GLIRQLRQHV-GFVFQNFNLFPHRTVLENIIE------GPVIVKGEPKEEATARARELLA 130
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+ L+ L+ + +RV I L P ++L DEPT LDP +++ +
Sbjct: 131 KVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
Query: 207 AKRKSRAVLLTME----KPRSDVLPFLDRTAYLCLGDL--IYAGP----TRLMLEYFRS 255
A+ K V++T E + +D F+D+ + G ++A P TR LE F
Sbjct: 191 AQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLEKFLL 249
|
Length = 250 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 7e-17
Identities = 50/161 (31%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------ 94
+ L +SL+++ GE +LG G GK LL +I+ T GEI+LDG ++
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPTSGEILLDGKDITNLPPHKR 72
Query: 95 ---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+FQ Y L P LTV + + + L ++ + R+ + L + L
Sbjct: 73 PVNTVFQN---YA-----LFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLE 121
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
A R S+L+ + +RV I LV +P +LLLDEP LD
Sbjct: 122 GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)
Query: 32 RVFG-NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIIL 87
+VFG LKD+SL V GE+ ++G G+GK L+ I+ R +SG+ +++
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS----VLV 64
Query: 88 DGTPMSP------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
DGT ++ + + G + +L+ S TV + + L I V + R+
Sbjct: 65 DGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP--LEIA-GVPKAEIEERV 121
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
++L + L + A ++L+ + +RV I L +P +LL DE T LDP +T I++
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 202 ML 203
+L
Sbjct: 182 LL 183
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 9e-17
Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 16/190 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR---RSSGTTRGEIILDGTPMS----- 93
++D+S EV PGE+L ++G GSGK L + T GE+ILDG +
Sbjct: 24 AVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83
Query: 94 --PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
+L + + T L P +T+ + L + + SR R ++L +
Sbjct: 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRAVELLEQVG 141
Query: 150 LSNVARRNIS--ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
L + RR+ +L+ +RV+I L P LL+ DEPT LD + I+ +L
Sbjct: 142 LPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ 201
Query: 208 KRKSRAVLLT 217
+ AVL
Sbjct: 202 RELGMAVLFI 211
|
Length = 539 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-16
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 37/174 (21%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
Q +LK++SLE++ GE +A+LG GSGK LL+++ +GEI LDG P+S
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL-TGDLKPQQGEITLDGVPVS---- 67
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ LI L L+ + +R N+ RR
Sbjct: 68 ----DLEKALSSLISVLNQRPYLF----------------DTTLRN--------NLGRR- 98
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ E +R+ + L++D ++LLDEPTV LDP++ ++S++ K K+
Sbjct: 99 ---FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKT 149
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 55/209 (26%), Positives = 81/209 (38%), Gaps = 47/209 (22%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ +G +L D+SL + GE++A+LG GSGK LL I+ G I++DG
Sbjct: 8 KRYGQKT---VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGED 63
Query: 92 M-----SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ + G V L P LTV + + LS G Q +Q
Sbjct: 64 LTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--LS-GGQ----------QQ--- 107
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
RV + L DP +LLLDEPT LDP++ + ++L S
Sbjct: 108 ---------------------RVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL 146
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235
+ V+L + DR L
Sbjct: 147 QAQLGITVVLVTHDLD-EAARLADRVVVL 174
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGT-----PMS 93
++ +SL V+ GE++ +LG G+GK +I G + G+I+LDG PM
Sbjct: 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV----GLVKPDSGKILLDGQDITKLPMH 70
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ + GY+ + LTVE+ + + +S+ R ++ ++L + ++++
Sbjct: 71 -KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHL 126
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ S L+ E RRV I L +P LLLDEP +DP++
Sbjct: 127 RKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIA 168
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-16
Identities = 46/162 (28%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 43 LKDISLEVR---PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-------- 91
L D +L++ EV + G+ G+GK LL I+ G I+L+GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKI 68
Query: 92 -MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ PQ Q G V + L P L V + L + + + ++L L L
Sbjct: 69 NLPPQ--QRKIGLVFQQYALFPHLNVRENLAFGL-----KRKRNREDRISVDELLDLLGL 121
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ R ++L+ E +RV + L P LLLLDEP LD
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD 163
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG---TPMSPQL 96
+ D+SLEVRPGE++ ++G G+GK L +I +G + G +I G T + P
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLI----TGFYKPSSGTVIFRGRDITGLPPHR 75
Query: 97 ---------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ----VSRYVR-----N 138
FQ T L P LTV + + AH +G R +
Sbjct: 76 IARLGIARTFQI--------TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREAR 127
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
R R++L + L +A R L+ + RR+ I L P LLLLDEP L+P T
Sbjct: 128 ERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEE 187
Query: 199 IVSMLSSYAKRKSRAVLL 216
+ ++ R +LL
Sbjct: 188 LAELIRELRDRGGVTILL 205
|
Length = 250 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQLFQ 98
+LK ++ GEVLA+LG+ G+GK LL +G R G +++DG P+
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLL----LHLNGLLRPQSGAVLIDGEPLD----Y 58
Query: 99 TTCGYVNHRTDLIPSL-TVEQTLYYAAHLSIGPQVSRYVRN---------ARIRQVLADL 148
+ G + R + + L+ A + V+ N R+R+ L +
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAA---DVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
S + R L+ E +RV I + P +LLLDEPT LDP ++++L
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAIL 170
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 6/179 (3%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+ L+D+SL + GE++ VLG G GK LL +I+ + +RG I L+G +
Sbjct: 16 KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGPGA 74
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ + N L+P L V + + L + + R Q+LA + L +
Sbjct: 75 ERGVVFQNEA--LLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
I +L+ +RV I L +P LLLLDEP LD L+ + +L + + VLL
Sbjct: 130 IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 55/174 (31%), Positives = 78/174 (44%), Gaps = 30/174 (17%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
++ FG LKDISL V+ GE + +LG G GK LL +I+ G T G I
Sbjct: 11 RKRFGAFT---ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA----GLERQTAGTIYQ 63
Query: 88 DG---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
G T + PQ +FQ+ Y L P+LTV + Y + R
Sbjct: 64 GGRDITRLPPQKRDYGIVFQS---YA-----LFPNLTVADNIAYGLK---NRGMGRAEVA 112
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ ++L + L R+ +L+ + +RV + L P LLLLDEP LD
Sbjct: 113 ERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 3e-16
Identities = 68/238 (28%), Positives = 97/238 (40%), Gaps = 21/238 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTP---MSPQ 95
ILK + ++PGE+ VLG GSG LL+ I+ + G G I DG +
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 96 LFQTTCGYVNHRTDL-IPSLTVEQTLYYAAHLSIGPQ-----VSRYVRNARIRQV-LADL 148
++ Y N TD+ P LTV +TL +AA PQ VSR I V +A
Sbjct: 136 -YRGDVVY-NAETDVHFPHLTVGETLDFAARCK-TPQNRPDGVSREEYAKHIADVYMATY 192
Query: 149 ALS-----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
LS V + ++ E +RV I + + D T LD + + L
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCP 261
+ A L+ + + D D+ L G IY GP +YF +GF CP
Sbjct: 253 KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCP 310
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 3e-16
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 16/162 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------- 93
L+D+S + GE + + G G+GK LL++I TRG+I+++G +S
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREI 74
Query: 94 PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P L + G V + R L+P TV + + + IG R+ +VL + L
Sbjct: 75 PFLRRQI-GVVFQDFR--LLPDRTVYENVALPLRV-IG--KPPREIRRRVSEVLDLVGLK 128
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ AR S+L+ E +RV I +V P +LL DEPT NLDP
Sbjct: 129 HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
|
Length = 223 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 54/177 (30%), Positives = 92/177 (51%), Gaps = 20/177 (11%)
Query: 30 FQRV---FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86
F+ V +G + A+ +++LE+ GE L ++G GSGK +++I+R T GEI
Sbjct: 3 FENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIF 59
Query: 87 LDGTPMS---PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV---SRYVRNAR 140
+DG + P + GYV + L P +TVE+ ++++ P++ + R
Sbjct: 60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE------NIALVPKLLKWPKEKIRER 113
Query: 141 IRQVLADLAL--SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
++LA + L + A R EL+ + +RV + L DP LLL+DEP LDP++
Sbjct: 114 ADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPIT 170
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-16
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 20/213 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQ 98
ILKDIS++ G + ++G G+GK L+++I+R T G I++DG + +
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRN 157
G V + L TV+ + Y GP + + +N + L+ + L+ A R+
Sbjct: 77 RKIGMVFQQPHLFEG-TVKDNIEY------GPML-KGEKNVDVEYYLSIVGLNKEYATRD 128
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL- 216
+ L+ E +RV I L +P +LLLDEPT LDP ST +I ++ + + V+
Sbjct: 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188
Query: 217 --TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
ME+ + D TA+L G L+ T
Sbjct: 189 THNMEQAKR----IGDYTAFLNKGILVEYAKTY 217
|
Length = 241 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 5e-16
Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L+DI+L V GE +A+LG G GK LL +I+ T GE++LDG P
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-TSGEVLLDGRP--VTGPGPDI 74
Query: 102 GYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
GYV L+P LTV + L S+ R +++L + L+ +
Sbjct: 75 GYVFQEDA--LLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPH 129
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+L+ +RV I L P LLLLDEP LD L
Sbjct: 130 QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
|
Length = 248 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 54/169 (31%), Positives = 83/169 (49%), Gaps = 19/169 (11%)
Query: 33 VFGNIQTAL-ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+G A+ L+DISL V GE +A++G G GK LL +I +G T GE+++D
Sbjct: 9 TYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRII----AGLERPTSGEVLVD 64
Query: 89 GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVL 145
G P++ GYV + L+P LTV ++++G + V + R ++L
Sbjct: 65 GEPVTGPGPD--RGYVFQQDALLPWLTVLD------NVALGLELQGVPKAEARERAEELL 116
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ LS +L+ +RV + L DP +LLLDEP LD L
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDAL 165
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-15
Identities = 50/159 (31%), Positives = 84/159 (52%), Gaps = 16/159 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ---L 96
LK ++L ++ GE ++++G G GK LL +IS + T+ G +IL+G ++ P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS-GGVILEGKQITEPGPDRMVV 59
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
FQ N+ L+P LTV + + A + P +S+ R A + + +A + L+ A +
Sbjct: 60 FQ------NY--SLLPWLTVRENIALAVD-RVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+L+ +RV I L P +LLLDEP LD L+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 2e-15
Identities = 58/210 (27%), Positives = 92/210 (43%), Gaps = 19/210 (9%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRA---LLEVISRRSSGTTR--GEIILDGTPMSPQLF 97
++ +S VR GE+ +LG G+GK +L + + +SG G ++ P+
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR----EPREV 71
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ G V + LT + LY A L V R RI ++L + L A R
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ + RR+ I LV P +L LDEPT+ LDP + + + + +LLT
Sbjct: 129 VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLT 188
Query: 218 ---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
ME+ ++ L DR A + G +I G
Sbjct: 189 THYMEE--AEQL--CDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-15
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---P 94
Q LK+ +L + GE +A+LG GSGK LL+++ + +G I L+G ++
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLL-AGAWDPQQGSITLNGVEIASLDE 407
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV-LADLALSNV 153
Q + T + R L S T+ L A + ++ A ++QV L L S
Sbjct: 408 QALRETISVLTQRVHLF-SGTLRDNLRLANPDASDEELW-----AALQQVGLEKLLESAP 461
Query: 154 ARRN--ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
N + E L+ E RR+ + L+ D L LLDEPT LDP++ ++++L +A
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 208 KRKS 211
+ K+
Sbjct: 522 EGKT 525
|
Length = 573 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-15
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQLF 97
++ +S + GE L + G GSGK LL +I+ G G I LDG +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIA----GLLPPAAGTIKLDGGDIDDPDV 71
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
C Y+ HR + P+LTV + L + A G I L + L+ +A
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGG-------EELDIAAALEAVGLAPLAHLP 124
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
L+ + RRV + LV + + +LDEPT LD + L ++ ++ + + T
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAAT 184
|
Length = 207 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 25/195 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDG---TPMSP 94
+ +S E++ GE+L ++G GSGK +A++ ++ + ++ GEI+ DG +S
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 95 QLFQTTCG----YV--NHRTDLIPSLTVEQTL--YYAAHLSIGPQVSRYVRNARIRQVLA 146
+ + G + + T L P +T+ + H +S+ R ++L
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG---LSKKEAKERAIELLE 136
Query: 147 DLALSNVARRNISELTPSE----HR-RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+ + + RR + P E R RV+I L +P LL+ DEPT LD I+
Sbjct: 137 LVGIPDPERR--LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILD 194
Query: 202 MLSSYAKRKSRAVLL 216
+L + K A++L
Sbjct: 195 LLKELQREKGTALIL 209
|
Length = 316 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 7e-15
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-------MSPQ 95
+ D+S ++R GE L ++G GSGK L +++ ++ G II DG +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSS-GSIIFDGQDLDLTGGELRRL 365
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVA 154
+ + + + L P +TV L L I S R AR+ ++L + L
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFL 423
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R EL+ + +RV I L +P LL+LDEP LD
Sbjct: 424 DRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462
|
Length = 539 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 7e-15
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 54/197 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
L ++SL ++ GE++A++G GSGK LL I+ T GEI++DG ++
Sbjct: 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAK------- 65
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+P + + + Y LS G
Sbjct: 66 ---------LPLEELRRRIGYVPQLSGG-------------------------------- 84
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221
+ +RV + L+ +P LLLLDEPT LDP S ++ +L A+ R V++ P
Sbjct: 85 ---QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG-RTVIIVTHDP 140
Query: 222 RSDVLPFLDRTAYLCLG 238
DR L G
Sbjct: 141 -ELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 7e-15
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 15/186 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------Q 95
L D+S ++ GE L ++G GSGK L I T G II DG + +
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRK 78
Query: 96 LFQTTCGYV--NHRTDLIPSLTVEQTLY--YAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ + V + + L P +T+ + + H G + R + +L + L
Sbjct: 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH---GKLSKKEARKEAVLLLLVGVGLP 135
Query: 152 -NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
V R EL+ + +RV I L +P LL+ DEPT LD I+ +L +
Sbjct: 136 EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL 195
Query: 211 SRAVLL 216
+L
Sbjct: 196 GLTLLF 201
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 19/171 (11%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPM--SPQLFQT 99
D + V A+ G GSGK L+ +I+ G TR GEI+L+G + S +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIA----GLTRPDEGEIVLNGRTLFDSRKGIFL 70
Query: 100 T-----CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
GYV L P L+V L Y + + R +V+ L + ++
Sbjct: 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHLL 125
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
R L+ E +RV IG L+ P LLL+DEP LD Y I+ L
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLER 176
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 8e-15
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 48/190 (25%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMS 93
+ ++D+S EVR GE++ + G G+G+ L E + R GEI LDG P++
Sbjct: 9 GLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVT 65
Query: 94 P----QLFQTTCGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ YV R L+ L+V + + ++ LS G Q Q
Sbjct: 66 RRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQ-----------Q--- 111
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
+VV+ L +DP +L+LDEPT +D + I ++
Sbjct: 112 ---------------------KVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 207 AKRKSRAVLL 216
A +AVLL
Sbjct: 151 A-DAGKAVLL 159
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 9e-15
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 16/228 (7%)
Query: 23 LVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR 82
++ + +R +T + +S V+PGEV +LG G+GK L +++
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA- 59
Query: 83 GEIILDG--TPMSPQLFQTTCGYVNHRTDLIPSLTV-EQTLYYAAHLSIGPQVSRYVRNA 139
G +DG P + G+V+ T L LT E Y+A + A
Sbjct: 60 GFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDEL----TA 115
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R+ ++ L + + R + + ++V I LV DP +LLLDEPT LD ++T +
Sbjct: 116 RLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175
Query: 200 VSMLSSYAKRKSRAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ + + +L + M+ +V DR L G ++Y G
Sbjct: 176 REFIRQL-RALGKCILFSTHIMQ----EVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 9e-15
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 37 IQTALIL-KDISLEVRPGEVLAVLGSKGSGKR----ALLEVIS---RRSSGTTRGEIILD 88
+Q A L +SL ++ G VLA++G GSGK A L ++ R+ T G ++LD
Sbjct: 12 LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ----TAGRVLLD 67
Query: 89 GTPMSP-QLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAH-LSIGPQVSRYVRNARIRQV 144
G P++P L + N R+ P T+ H + + +A +
Sbjct: 68 GKPVAPCALRGRKIATIMQNPRSAFNPLHTM------HTHARETCLALGKPADDATLTAA 121
Query: 145 LADLALSNVARRNISELTPSEH-----RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
L + L N AR + +L P E +R++I L+ + ++ DEPT +LD ++ I
Sbjct: 122 LEAVGLENAAR--VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179
Query: 200 VSMLSSYAKRKSRAVLL 216
+ +L S ++++ +LL
Sbjct: 180 LDLLESIVQKRALGMLL 196
|
Length = 254 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQ 98
+ D++L + GE L ++G GSGK L++I+R T+ GEI++DG +S P +
Sbjct: 16 AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTS-GEILIDGEDISDLDPVELR 74
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL--SNVARR 156
GYV + L P LTV + + L + R ++L + L S A R
Sbjct: 75 RKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR 131
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
EL+ + +RV + L DP +LL+DEP LDP++
Sbjct: 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
|
Length = 309 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 1e-14
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 20/162 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQLFQT 99
L DISL+++ GE++A+LG G+GK LL +I +G G I L+G + F
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRII----AGLETPDAGRIRLNGRVL----FDV 69
Query: 100 T--------CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ G+V L P +TV + + + S AR+ ++L + L
Sbjct: 70 SNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERP-SEAEIRARVEELLRLVQLE 128
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+A R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 129 GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170
|
Length = 345 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 11/169 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------- 94
+LK +SL + GE++A++GS GSGK LL ++ + T+ GE++ +G +S
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTS-GEVLFNGQSLSKLSSNERA 78
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+L G++ L+P T + + A L IG + S R ++L + L +
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENV--AMPLLIGKK-SVKEAKERAYEMLEKVGLEHRI 135
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
SEL+ E +RV I LV P L+L DEPT NLD + +I ++
Sbjct: 136 NHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 1e-14
Identities = 58/187 (31%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDG---TPMSP- 94
IL +SL V GE++A+LG G+GK LL+ I G G I DG T + P
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTI----MGLLPPRSGSIRFDGRDITGLPPH 70
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSN 152
+ + GYV + P LTVE+ L A+ R R AR+ +V +L L
Sbjct: 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYAR-----RRAKRKARLERVY-ELFPRLKE 124
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA---KR 209
++ L+ E + + I L+ P LLLLDEP+ L P IV + +
Sbjct: 125 RRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP----KIVEEIFEAIRELRD 180
Query: 210 KSRAVLL 216
+ +LL
Sbjct: 181 EGVTILL 187
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 22/176 (12%)
Query: 30 FQRV---FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86
F+ V FG Q +L +I L + GEV+ ++G GSGK LL I++ T G++I
Sbjct: 4 FKNVSKHFGPTQ---VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLI 59
Query: 87 LDG-----TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP-QV---SRYVR 137
+DG + +L + G V + L P LT + + + GP +V S+
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF------GPLRVRGASKEEA 113
Query: 138 NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ R++LA + L+ A SEL+ + +RV I L P L+L DEPT LDP
Sbjct: 114 EKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
|
Length = 240 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------Q 95
+ D+SL+VR GE+ ++G GSGK LL I+R T G++++DG ++ +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRE 98
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + V L+P TV + + + + V R R R + L + L
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEH 155
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ EL+ +RV + L DP +LL+DE LDPL
Sbjct: 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL 194
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 34/182 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM----SPQLF 97
IL + L+V GE+LA+LG GSGK LL +I +GEI++DG + +L+
Sbjct: 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELY 81
Query: 98 Q--TTCGYVNHRTDLIPSLTVEQ----TLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ G + + L SLTV + L L ++ +L L
Sbjct: 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLP--------------ESLIRELVLM 127
Query: 152 NVA----RRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
+ R ++L PSE +RV + + DP LL LDEPT LDP+S +I +
Sbjct: 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDEL 187
Query: 203 LS 204
+
Sbjct: 188 IR 189
|
Length = 263 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 23/189 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGTTR---GEIILDGTPMSP- 94
+LK++SL V GE +A+ G G+GK LL+ + SG +D SP
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 95 ---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
++ + T GYV+ +IP ++ L A + V R AR R++LA L
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVS---ALEVVAEPLLERGVPREAARARARELLARL--- 136
Query: 152 NVARRNISELTPS-----EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
N+ R + L P+ E +RV I + D +LLLDEPT +LD + ++V +++
Sbjct: 137 NIPER-LWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE- 194
Query: 207 AKRKSRAVL 215
AK + A++
Sbjct: 195 AKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 14/176 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
L D+SL +R GE L + G G+GK LL+++ + +RG++ + G ++ P
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLP 75
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-IGPQVSRYVRNARIRQVLADLALSNV 153
L + G V L+P TV + + + + + R+ L + L +
Sbjct: 76 LLRRRI-GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQ----RRVGAALRQVGLEHK 130
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
A +L+ E +RV I +V P LLL DEPT NLDP + I+ +L KR
Sbjct: 131 ADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR 186
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-14
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ FG QTA+ +ISL V V +LG G+GK LL++I+ T+ GEII DG P
Sbjct: 8 KRFGK-QTAV--NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS-GEIIFDGHP 63
Query: 92 MSPQLFQTTCGYVNHRTDL--IPSLTVEQTLYYAAHLSIGPQVS-----RYVRNARIRQV 144
+ R DL I SL LY +L+ + + ++RI +V
Sbjct: 64 WT-------------RKDLHKIGSLIESPPLY--ENLTARENLKVHTTLLGLPDSRIDEV 108
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
L + L+N ++ + + +R+ I L+ P LL+LDEPT LDP+
Sbjct: 109 LNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 3e-14
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 22/188 (11%)
Query: 28 SCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87
+ + +G + +L DISL V+ GE+ LG G+GK +++I + GEI
Sbjct: 4 NDLTKTYGKKR---VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDS-GEITF 59
Query: 88 DGTPMSPQLFQTTCGYVNHRTDLI------PSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
DG + +Q + LI P+LT + L A L +R RI
Sbjct: 60 DG-----KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG-------IRKKRI 107
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+VL + L + A++ + + +R+ I L+ +P LL+LDEPT LDP +
Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRE 167
Query: 202 MLSSYAKR 209
++ S +
Sbjct: 168 LILSLRDQ 175
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-14
Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
ILK + L V+ GE +A++G GSGK LL V++ ++ GE+ L G P+
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSS-GEVRLLGQPLHKLDEDARA 83
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
L G+V LIP+LT + + L G + A + +L + L
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELR-GESSADSRAGA--KALLEAVGLGKRL 140
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++L+ E +RV + P +L DEPT NLD
Sbjct: 141 THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-14
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 24/181 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQT 99
L D++L ++ G++ A++G+ G+GK LL ++ + T GEI ++G +SP+ ++
Sbjct: 337 LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRK 395
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI- 158
+V+ + + T+ + + A P S I L L +
Sbjct: 396 QISWVSQNP-YLFAGTIRENILLAR-----PDASD----EEIIAALDQAGLLEFVPKPDG 445
Query: 159 ---------SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ L+ + +R+ + L+ LLLLDEPT +LD + +I+ L AK+
Sbjct: 446 LDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ 505
Query: 210 K 210
K
Sbjct: 506 K 506
|
Length = 559 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 4e-14
Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 36/227 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-----S 93
+KD+S++ V A++G G GK +L I+R S G+I+LD T +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD----LA 149
P + G V + + P++++ + ++ Y N R+ + AD +
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNV-----------IAGYKLNGRVNRSEADEIVESS 128
Query: 150 LSNVA---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L VA + N EL+ + +R+ I + P ++L+DEP LDP+ST I
Sbjct: 129 LKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIE 188
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
++ K K +++T ++ + D TA+ +GDL+ G T+
Sbjct: 189 ELIEEL-KEKYTIIIVTHNMQQAARVS--DYTAFFYMGDLVECGETK 232
|
Length = 252 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 5e-14
Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 30/173 (17%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FGN TAL D++L++ GE + +LG G GK L +I+ G T G I +
Sbjct: 8 KRFGN-VTAL--DDLNLDIADGEFVVLLGPSGCGKTTTLRMIA----GLEEPTSGRIYIG 60
Query: 89 G---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G T + P+ +FQ Y L P +TV + + L P+ +
Sbjct: 61 GRDVTDLPPKDRDIAMVFQN---YA-----LYPHMTVYDNIAFGLKLRKVPKDEI---DE 109
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+R+V L + ++ R +L+ + +RV +G +V++P + L+DEP NLD
Sbjct: 110 RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 5e-14
Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 12/162 (7%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---T 90
FG+ Q L D++LEV G ++A+LG GSGK LL +I+ + G I L+G T
Sbjct: 10 FGSFQ---ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDS-GRIRLNGQDAT 65
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ + G+V L LTV + + L I ++ AR+ ++L + L
Sbjct: 66 RVHAR--DRKIGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIK-ARVEELLELVQL 120
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 121 EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 17/231 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+ +IS EV PGE+ +LG G+GK +I T GEI +G P+S ++ G
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTE-GEITWNGGPLSQEIKNRI-G 75
Query: 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELT 162
Y+ L P +TVE L Y A L + + +++ L L + + I EL+
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELS 132
Query: 163 PSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT--MEK 220
+++ + ++ +P LL+LDEP LDP++ L+ + + + + + ME
Sbjct: 133 KGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192
Query: 221 PR--SDVLPFLDRTAYLCLGDLI----YAGPTRLMLEYFRSIGFPCPELEN 265
D L L + + G + G RL++E S+ EL N
Sbjct: 193 VEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSL----EELAN 239
|
Length = 300 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-14
Identities = 62/228 (27%), Positives = 103/228 (45%), Gaps = 27/228 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR----RSSGTTRGEIILDG-----TPM 92
++K + L++ V A++G G GK LL +R GE+ L G +
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLAD 147
P + G V + P LT+ +++IG +++ V+ + R+ L
Sbjct: 79 DPIEVRREVGMVFQYPNPFPHLTIYD------NVAIGVKLNGLVKSKKELDERVEWALKK 132
Query: 148 LALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
AL + + + S L+ + +R+VI L P +LL+DEPT N+DP+ T I +L
Sbjct: 133 AALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
Query: 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+ +K ++L P + D A+L LG LI GPTR + E
Sbjct: 193 --FELKKEYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVFE 237
|
Length = 253 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 7e-14
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMS-PQLF 97
L+DI+L + GE+L VLG G GK LL +I+ G+ I LDG P+ P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS----ITLDGKPVEGPGAE 71
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ G V L+P V+ + + L+ V + R Q+L + L +R
Sbjct: 72 R---GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY 125
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
I +L+ + +RV I L +P LLLLDEP LD + + ++L + + VLL
Sbjct: 126 IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLL 184
|
Length = 255 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-14
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 30/177 (16%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR--GEIILDGTPMS 93
ILKD S V+PGE++ VLG GSG LL+ ++ R+ G G+I +G P
Sbjct: 16 GRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYK 75
Query: 94 P--QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ + YV+ P+LTV +TL +A + + +VR
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRC----KGNEFVRG------------- 118
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
++ E +RV I LV +L D T LD + I+ + + A
Sbjct: 119 ---------ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMAD 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 9e-14
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 14/165 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---T 90
FG+ L D+SL++ GE++A+LG GSGK LL +I+ G I+ G T
Sbjct: 12 FGDFVA---LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDAT 67
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN---ARIRQVLAD 147
+ Q + G+V L +TV + A L + P+ R A++ ++L
Sbjct: 68 DVPVQ--ERNVGFVFQHYALFRHMTVFDNV--AFGLRVKPRSERPPEAEIRAKVHELLKL 123
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L +A R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 124 VQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 54/187 (28%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTP---MSP- 94
IL+ +SLEV GEV VLG G GK LL+ + G G I LDG + P
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL----MGLLPVKSGSIRLDGEDITKLPPH 70
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-----A 149
+ + YV ++ P LTVE+ L R R++ ++
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL----------LTGLAALPRRSRKIPDEIYELFPV 120
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L + R +L+ + +++ I LV P LLLLDEPT + P I ++
Sbjct: 121 LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 210 KSRAVLL 216
A+LL
Sbjct: 181 GGMAILL 187
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 13/194 (6%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGT---TRGEIIL 87
+G Q L DI+L+ GE L +LG G+GK +LL V++ SGT
Sbjct: 12 YGAHQA---LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68
Query: 88 DGTPMSPQLFQ--TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
TP + G V + +L P LTV++ L A +G +S+ AR ++L
Sbjct: 69 SKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG--LSKDQALARAEKLL 126
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L L A R L+ + +RV I L+ +P +LL DEPT LDP T IVS++
Sbjct: 127 KRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186
Query: 206 YAKRKSRAVLLTME 219
A+ V++T E
Sbjct: 187 LAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 9/151 (5%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQTTC 101
D+SL + GE+ A+LG+ G GK LL +++ T G+I+LDG +S P +Q
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPP--YQRPI 93
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+ L P +TVEQ + + ++ + +R+ ++L + + A+R +L
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQL 150
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ + +RV + L K P LLLLDEP LD
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-13
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ--LFQT 99
+ +S + GE L V G GSGK LL +++ S G ++L+G P+ Q
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLA-GRVLLNGGPLDFQRDSIAR 73
Query: 100 TCGYVNHRTDLIPSLTVEQTL-YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
Y+ H + +L+V + L ++ A S + ++ + LA + L+ R +
Sbjct: 74 GLLYLGHAPGIKTTLSVLENLRFWHADHS----------DEQVEEALARVGLNGFEDRPV 123
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
++L+ + RRV + L+ L +LDEPT LD ++ + R VL T
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTT 182
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 22/189 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR----ALLEVISRRSSGTTRGEIILDGTP------ 91
++K+IS +RPGE L ++G GSGK ALL +I+ ++GEI DG P
Sbjct: 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFDGQPLHNLNR 354
Query: 92 --MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVLADL 148
+ P + + + + L P L V Q + L + P +S R ++ V+ ++
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 149 ALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
L R R +E + + +R+ I L+ P L++LDEPT +LD I+++L S
Sbjct: 413 GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQ 472
Query: 208 KRKSRAVLL 216
++ A L
Sbjct: 473 QKHQLAYLF 481
|
Length = 529 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTP---MSPQ 95
+L D+SL +RPGEV+A+LG G+GK LL + SG GE+ L+G P SP
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL----SGELSPDSGEVRLNGRPLADWSPA 72
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ + L TVE+ + A + + LA + L+++A
Sbjct: 73 ELARRRAVLPQHSSLSFPFTVEEVV--AMGRAPHGLSRAEDDAL-VAAALAQVDLAHLAG 129
Query: 156 RNISELTPSEHRRV----VIGTQL---VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
R+ +L+ E +RV V+ QL P LLLDEPT LD + ++ + A
Sbjct: 130 RDYPQLSGGEQQRVQLARVL-AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAH 188
Query: 209 RKSRAVL 215
+ AV+
Sbjct: 189 ERGLAVI 195
|
Length = 258 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 48 LEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGY 103
L GE+L +LG G+GK RA+L +I +G + + G GY
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA-----KGTVKVAGASPGKGWRHI--GY 53
Query: 104 VNHRTDL---IPSLTVEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVARRNIS 159
V R + P ++V T+ IG + A +R L + L+ +A R +
Sbjct: 54 VPQRHEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVG 112
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
EL+ + +RV++ L P +LLLDEP LD + L+ + A + ++ T
Sbjct: 113 ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP----Q 95
+ D SL+V GE+ ++G GSGK L+ +++R TRGEI++DG +S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRE 102
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
L + V L+P TV + + + + V + R R + L + L A
Sbjct: 103 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD 159
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ +EL+ +RV + L DP +LL+DE LDPL
Sbjct: 160 KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198
|
Length = 386 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 18/189 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTR--GEIILDGTPMSPQ 95
L++ +S V+ GE +LG G+GK L + ++ +G+ GE + P +
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPV----PSRAR 76
Query: 96 LFQTTCGYVNHRTDLIPSLTV-EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+ G V +L P TV E L + + + +R A + +L L N A
Sbjct: 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAAR----ALVPPLLEFAKLENKA 132
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+ EL+ RR+ + LV DP +L+LDEPT LDP + +L+ L S R + +
Sbjct: 133 DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR-GKTI 191
Query: 215 LLT---MEK 220
LLT ME+
Sbjct: 192 LLTTHFMEE 200
|
Length = 306 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP----Q 95
+ D L + GE+ ++G GSGK + +++R T G+I +DG SP +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELRE 67
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ + G V + L P +T+ Q L R + ++L + L
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEH 124
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
R EL+ +RV + L +P +LL+DE LDPL
Sbjct: 125 RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP------Q 95
L GE+ A++G GSGK LL +I+ + + G ++++G T P
Sbjct: 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQS-GRVLINGVDVTAAPPADRPVSM 74
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALSNVA 154
LFQ +L LTVEQ + L + P + I LA + L+ +
Sbjct: 75 LFQ--------ENNLFAHLTVEQNV----GLGLSPGLKLTAEDRQAIEVALARVGLAGLE 122
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+R EL+ E +RV + LV+D +LLLDEP LDP ++ ++ V
Sbjct: 123 KRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTV 182
Query: 215 LLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
L+ +P D R +L G + G
Sbjct: 183 LMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTP---MSPQL 96
+L +SL++RPGEVLA+LG G+GK LL+ +S GE+ L+G P P+
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDS---GEVTLNGVPLNSWPPEE 72
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI-RQVLADLALSNVAR 155
+ + L TV++ + + RI Q LA LS +A
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSG--REPEEDERIAAQALAATDLSGLAG 130
Query: 156 RNISELTPSEHRRVVIG---TQL---VKDPVLLLLDEPTVNLDP 193
R+ L+ E +RV + QL V L LDEPT LD
Sbjct: 131 RDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 5e-13
Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 30/168 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQLFQT 99
L +SL VRPGEV A+LG G+GK L++++ SG GEI++DG P++ F +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKIL----SGVYPPDSGEILIDGKPVA---FSS 76
Query: 100 TCGYVNHR-------TDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-------NARIRQVL 145
+ L+P+L+V A ++ +G + +R R R++L
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSV------AENIFLGREPTRRFGLIDRKAMRRRARELL 130
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
A L L + +L+ ++ + V I L D +L+LDEPT L
Sbjct: 131 ARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTV 178
|
Length = 500 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMS-------- 93
L V GE++A+LG G+GK LL +I+ G GEI+++G +
Sbjct: 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIA----GFETPASGEILINGVDHTASPPAERP 72
Query: 94 -PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALS 151
LFQ +L LTV Q + L + P + + ++ A + L+
Sbjct: 73 VSMLFQ--------ENNLFAHLTVAQNI----GLGLSPGLKLNAEQREKVEAAAAQVGLA 120
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+R EL+ + +RV + LV++ +LLLDEP LDP +++++S +
Sbjct: 121 GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+L+ P D DR +L G + G T+ +L
Sbjct: 181 MTLLMVTHHP-EDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-13
Identities = 60/232 (25%), Positives = 97/232 (41%), Gaps = 31/232 (13%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPM- 92
T +K IS ++ GE LA++G GSGK ++L ++ ++ G I+ DG +
Sbjct: 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLL 80
Query: 93 ---SPQL-----------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
QL FQ T L P T+ + L L + +SR
Sbjct: 81 AASERQLRGVRGNKIGMIFQ------EPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAAR 132
Query: 139 ARIRQVLADLALSNVARRNIS---ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
AR ++L + + +R + EL+ + +RV+I L +P LL+ DEPT LD
Sbjct: 133 ARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
I+ +L A+L + V F DR + G+++ G T
Sbjct: 193 QAQILDLLKELQAELGMAILF-ITHDLGIVRKFADRVYVMQHGEIVETGTTE 243
|
Length = 534 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 6e-13
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 41/204 (20%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
+L+++SL + PGE + ++G G+GK LL++++ + GE+
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS-GEVTRPKG--------LR 67
Query: 101 CGYVNHRTDLIPSLTV-----------------EQTLYYAAHLSIGPQVSR--------- 134
GY++ L P TV + Y ++
Sbjct: 68 VGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 135 -YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ AR + L L + R +S L+ RRV + L+++P LLLLDEPT +LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRP-VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLD- 185
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLT 217
L + + L Y KR V++
Sbjct: 186 LES---IEWLEDYLKRYPGTVIVV 206
|
Length = 530 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 7e-13
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 24/220 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPM-----S 93
+K+++L+V+ G V A++G G GK L I+R T G I+LDG +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-------IGPQVSRYVRNARIRQVLA 146
P + G V + + P+++V + L+ + R +R A + +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
D L A + L+ + +R+ I L +P +LL+DEPT LDP ST I +++
Sbjct: 140 D-RLKTPA----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL 194
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
K+ + +++T ++ + D T++ +GDL+ GPT
Sbjct: 195 -KKVTTIIIVTHNMHQAARVS--DTTSFFLVGDLVEHGPT 231
|
Length = 252 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 9e-13
Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 19/218 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTR--GEIILDGTPMSPQLFQ 98
LK IS+E+ V+A +G G GK L + +R + TR GEI +DG + + Q
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 99 T-----TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
G V R + P ++ + + Y ++ G + + ++R R+ + L AL +
Sbjct: 79 VDELRKNVGMVFQRPNPFPK-SIFENVAYGLRVN-GVKDNAFIRQ-RVEETLKGAALWDE 135
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ + E L+ + +R+ I + P +LL+DEP LDP+ST + ++ K+
Sbjct: 136 VKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KK 194
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
V++T ++ + D+TA+ +G+++ T+
Sbjct: 195 DYTIVIVTHNMQQAARVS--DKTAFFYMGEMVEYDDTK 230
|
Length = 250 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 9e-13
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 9/179 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQT 99
L+ +S V PGE +A++G G+GK LL ++ T G I ++G P+ ++
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRD 396
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARRN 157
+V + + + T+ + + A + ++ + A + + +A L L
Sbjct: 397 QIAWV-PQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEG 455
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ L+ + +R+ + ++D LLLLDEPT +LD + ++ L + A+ R VLL
Sbjct: 456 GAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQG--RTVLL 512
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-12
Identities = 96/409 (23%), Positives = 156/409 (38%), Gaps = 71/409 (17%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQLFQT 99
ILKD S ++P + +LG SGK LL ++ + S GEI +G ++ + +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLS-IGPQ---VSRYVRNARIRQVL----ADLALS 151
T Y++ + +TV++TL ++A +G + +S R + + DL +
Sbjct: 240 TSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMK 299
Query: 152 NVARRNISE----------------------------LTPSEHRRVVIGTQLVKDPVLLL 183
A + ++ + +RV G +V L
Sbjct: 300 ATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLF 359
Query: 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243
+DE + LD +TY IV L VL+++ +P + D L G ++Y
Sbjct: 360 MDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQ 419
Query: 244 GPTRLMLEYFRSIGFPCPELENPLMYYLCLST--------VDRRSRERFIESNNQIVALV 295
GP +LE+F S GF CPE + + +++ DR R+I +
Sbjct: 420 GPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYI----SVSEFA 475
Query: 296 EKFKIEGAPYRKCASSVIMDHGNS-TIPS--LTSHKMPLVNFSKPG--------GFQDYQ 344
E+FK + V M N ++P SHK LV FSK D +
Sbjct: 476 ERFK---------SFHVGMQLENELSVPFDKSQSHKAALV-FSKYSVPKMELLKACWDKE 525
Query: 345 WSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPL 393
W M RN ++ + I IA+ F E LY G L
Sbjct: 526 WLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL 574
|
Length = 1470 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-12
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 36/179 (20%)
Query: 33 VFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG 89
F + A D+SL V+ GE+ A+LG G+GK L++++ G GEI +DG
Sbjct: 13 RFPGV-VAN--DDVSLSVKKGEIHALLGENGAGKSTLMKIL----FGLYQPDSGEIRVDG 65
Query: 90 TPMSP---------------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134
+ Q F L+P+LTV + + S G + R
Sbjct: 66 KEVRIKSPRDAIRLGIGMVHQHFM-----------LVPTLTVAENIILGLEPSKGGLIDR 114
Query: 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
ARI+++ L +++L+ E +RV I L + LL+LDEPT L P
Sbjct: 115 RQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
|
Length = 501 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 11/179 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG----TPMS-PQLF 97
L D+S V PGE+ ++G G+GK L++VI+ ++ GE++ DG T + ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE-GEVLFDGDTDLTKLPEHRIA 79
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADLALSN 152
+ G + + +LTV + L A + S + R RI ++LA + L +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
R + L+ + + + IG L +DP LLLLDEP + T +L S A + S
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHS 198
|
Length = 249 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 37/157 (23%), Positives = 66/157 (42%), Gaps = 15/157 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMS--PQLF 97
+ D+S + GE L + G G+GK LL +++ R GE+ G P+ + +
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDA---GEVYWQGEPIQNVRESY 73
Query: 98 QTTCGYVNHRTDLIPSLTVEQTL-YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
Y+ H+ + LT + L ++ A I + LA + L+ +
Sbjct: 74 HQALLYLGHQPGIKTELTALENLHFWQR-------FHGSGNAATIWEALAQVGLAGLEDL 126
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ +L+ + RRV + + L +LDEP LD
Sbjct: 127 PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDK 163
|
Length = 209 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 2e-12
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 45/172 (26%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+LKD+SL ++PGE +A++G GSGK LL+++ R T GEI++DG + + +
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLR 75
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
YV + S T+ + + LS G Q RQ +A +AR
Sbjct: 76 KNIAYVPQDP-FLFSGTIRENI-----LSGG-Q----------RQRIA------IAR--- 109
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
L++DP +L+LDE T LDP + LI+ L + AK K
Sbjct: 110 ---------------ALLRDPPILILDEATSALDPETEALILEALRALAKGK 146
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 16/191 (8%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR--GEII 86
+V+G+ + ++ +VR GEV LG G+GK + +++ R +SGT R G +
Sbjct: 1 KVYGDF---KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV 57
Query: 87 LDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+ P+ + + G V + LT + L L + + R ++L
Sbjct: 58 VR----EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLY---GLPKDEAEERAEELLE 110
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
L A R + + RR+ I L+ P +L LDEPT LDP + I + +
Sbjct: 111 LFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 207 AKRKSRAVLLT 217
K + +LLT
Sbjct: 171 -KEEGVTILLT 180
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 38/181 (20%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RAL--LEVISRRSSGTTRGE 84
+ FG+ + +LK ISL V GEV+ ++G GSGK R L LE G
Sbjct: 9 SKSFGDKE---VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-------DSGS 58
Query: 85 IILDGTPMS-----PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN- 138
I +DG + +L + G V + +L P LTV + + A P V+
Sbjct: 59 ITVDGEDVGDKKDILKLRRKV-GMVFQQFNLFPHLTVLENVTLA------P---VKVKKL 108
Query: 139 ------ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ ++L + L++ A ++L+ + +RV I L DP ++L DEPT LD
Sbjct: 109 SKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168
Query: 193 P 193
P
Sbjct: 169 P 169
|
Length = 240 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 63/200 (31%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 29 CFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD 88
CF +G Q L DI+L+ GE L +LG G+GK +LL V++ + G + +
Sbjct: 10 CF---YGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRS-GTLNIA 62
Query: 89 G---------TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
G + + + + G V + +L P LTV+Q L A +G +S+ A
Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG--LSKDQALA 120
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R ++L L L A R L+ + +RV I L+ +P +LL DEPT LDP T I
Sbjct: 121 RAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI 180
Query: 200 VSMLSSYAKRKSRAVLLTME 219
VS++ A+ V++T E
Sbjct: 181 VSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL- 96
+L+ IS + G +L + GS G+GK LL++I+ + +GEI+ + + L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLC 70
Query: 97 -FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+Q +V HR+ + P LT+ + Y H S G I ++ +L ++
Sbjct: 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPG--------AVGITELCRLFSLEHLID 122
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
L+ + R+V + + L LLDEP V LD LS I++ + + + K AVL
Sbjct: 123 YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEH-RAKGGAVL 181
Query: 216 LT 217
LT
Sbjct: 182 LT 183
|
Length = 200 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 58/225 (25%), Positives = 87/225 (38%), Gaps = 55/225 (24%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI-SRRSSGTTRGEII-------------- 86
+LK+IS + GEVL +LG G+GK L+ V+ T G II
Sbjct: 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74
Query: 87 --LDGTP-------MSPQ---------------------LFQTTCGYVNHRTDLIPSLTV 116
G P + P+ + Q T T L L
Sbjct: 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEA 134
Query: 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV 176
+ + Y ++G V I V ++++AR +L+ E +RVV+ QL
Sbjct: 135 LEEIGYEGKEAVGRAVDL------IEMVQLSHRITHIAR----DLSGGEKQRVVLARQLA 184
Query: 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221
K+P L L DEPT LDP + L+ + L K +++LT P
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGT-----PMS 93
++ D+SLEV GE++ +LG G+GK +I R SG I+LD PM
Sbjct: 19 VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK----ILLDDEDITKLPMH 74
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVLADLALSN 152
+ + GY+ + LTVE + A L I + + R + +L + +++
Sbjct: 75 -KRARLGIGYLPQEASIFRKLTVEDNI--MAVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ L+ E RRV I L +P +LLDEP +DP++
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIA 174
|
Length = 243 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 28/193 (14%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMSPQ--L 96
++ +S V GE +LG G+GK I+R G T G+I + G P+ + L
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGK----STIARMILGMTSPDAGKITVLGVPVPARARL 111
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-NAR-IRQVLADL----AL 150
+ G V +L TV + L L G RY + R I V+ L L
Sbjct: 112 ARARIGVVPQFDNLDLEFTVRENL-----LVFG----RYFGMSTREIEAVIPSLLEFARL 162
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ A +S+L+ RR+ + L+ DP LL+LDEPT LDP + +LI L S R
Sbjct: 163 ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR- 221
Query: 211 SRAVLLT---MEK 220
+ +LLT ME+
Sbjct: 222 GKTILLTTHFMEE 234
|
Length = 340 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 4e-12
Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 23/158 (14%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDG---TPMSPQLF- 97
D + + + A+ G GSGK +L+ +I+ G TR G I L+G +F
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIA----GLTRPDEGRIELNGRVLVDAEKGIFL 71
Query: 98 ---QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+ GYV L P TV L Y A+ Q++A L + ++
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGM---------WKSMRAQFDQLVALLGIEHLL 122
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R L+ E +RV IG L+ P LLL+DEP +LD
Sbjct: 123 DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 4e-12
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP------QLF 97
L V GE++A++G G+GK LL +I+ G I ++ T ++P LF
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLF 76
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALSNVARR 156
Q +L LTV Q + L + P + + ++ + +++ R
Sbjct: 77 Q--------ENNLFAHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDR 124
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+L+ + +RV + LV+ +LLLDEP LDPL +++++ + R +L+
Sbjct: 125 LPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLM 184
Query: 217 TMEKPRSDVLPFLDRTAYLCLG 238
SD + A + G
Sbjct: 185 VTHHL-SDARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 27/163 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQ 95
++ ++ L + GE L +LG G GK +L +I+ G G I+LDG T + +
Sbjct: 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIA----GFETPDSGRIMLDGQDITHVPAE 84
Query: 96 ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
+FQ+ Y L P +TV + + + + + R+ + L +
Sbjct: 85 NRHVNTVFQS---YA-----LFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQ 133
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L A+R +L+ + +RV I +V P +LLLDE LD
Sbjct: 134 LEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 19/220 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS---SGTT-RGEIILDGTPM-SPQL- 96
L DISLE +V A++G G GK L ++R + G GEI+LDG + P +
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V + + P E Y L + + R+ + L AL +
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAY---GLRVNGVKDKAYLAERVERSLRHAALWDE 138
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ + E L+ + +R+ I L +P +LL+DEP LDP++T I ++ R
Sbjct: 139 VKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
+ ++ + + V D TA+ +G LI GPT +
Sbjct: 199 YTIIIVTHNMQQAARV---SDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 8e-12
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 32/169 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTP------- 91
+ ISL +R G+ L ++G GSGK ALL +I ++GEI DG
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP------SQGEIRFDGQDIDGLSRK 356
Query: 92 -MSP-----QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
M P Q+ FQ G ++ P +TV Q + + P++S R+ R+ +
Sbjct: 357 EMRPLRRRMQVVFQDPYGSLS------PRMTVGQIIEEGLRVH-EPKLSAAERDQRVIEA 409
Query: 145 LADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L ++ L R R E + + +R+ I L+ P L+LLDEPT LD
Sbjct: 410 LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 8e-12
Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR--GEIILDGTPMSPQ---LF 97
L DI++++ ++ A++G+ G GK L +R + + G + ++G + Q
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA--- 154
+ G V + P++ V +++Y ++S P++ ++N + L L V
Sbjct: 78 RKNVGMVFQQ----PNVFV-KSIY--ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 155 ------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
++N L+ + +R+ I L P LLLLDEPT LDP+S+ +I +L +
Sbjct: 131 EVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH 190
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
S +++T + + D TA+ LG+LI G ++ E
Sbjct: 191 NLS-MIMVTHNMQQGKRVA--DYTAFFHLGELIEFGESKEFFE 230
|
Length = 246 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 8e-12
Identities = 59/188 (31%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---- 93
Q +LK +SL+++ GE +A+LG G GK LL++++R +GEI+L+G P++
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSE 409
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
L Q V+ R L S T+ L AA P S + + +VL + L +
Sbjct: 410 AALRQAIS-VVSQRVHLF-SATLRDNLLLAA-----PNAS----DEALIEVLQQVGLEKL 458
Query: 154 ARRN------ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+ + E L+ E RR+ I L+ D LLLLDEPT LD + I+ +L
Sbjct: 459 LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL 518
Query: 204 SSYAKRKS 211
+ +A+ K+
Sbjct: 519 AEHAQNKT 526
|
Length = 574 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 48/168 (28%), Positives = 84/168 (50%), Gaps = 12/168 (7%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGT 90
+ FG ++ L I LEVRPGE + + G G+GK L++++S GT GEI G+
Sbjct: 9 KTFGGVKA---LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGS 65
Query: 91 PMSPQLFQTT----CGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVL 145
P+ + T ++ L+P L+V + ++ +++ G +++ R + +L
Sbjct: 66 PLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLL 125
Query: 146 ADLALS--NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+L L NV R + + + + V I L K LL+LDEP+ +L
Sbjct: 126 RELQLDADNVT-RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 53/205 (25%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 18 LQHPALVETGSCFQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76
L P L + + G +L +SL++ PGE +A+LG GSGK LL ++
Sbjct: 330 LGKPTL-----ELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL 384
Query: 77 SSGTTRGEIILDGTP---MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS 133
+GE+ LDG P + + L + TV + L A + ++
Sbjct: 385 LD-PLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRLARPDATDEELW 442
Query: 134 RYVRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ + L L L V + L+ E +R+ + L+ D +LLLDEPT +L
Sbjct: 443 AALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHL 502
Query: 192 DPLSTYLIVSMLSSYAKRKSRAVLL 216
D + ++ L A R V+L
Sbjct: 503 DAETADELLEDL--LAALSGRTVVL 525
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 6/171 (3%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM--SPQLFQTT 100
L ++S E + G ++ LG G+GK +++I+ + G + + G + +P+ Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDS-GSVQVCGEDVLQNPKEVQRN 76
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
GY+ L + V + L + A + + + R+ +++ + L + I +
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQ 133
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
L+ +RV + L+ DP +L+LDEPT LDP I +++ + K K+
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 28/192 (14%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSPQ-- 95
ILK ++L V+ GEV A++G GSGK L I T GEI+ DG +SP
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 96 -------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
FQ IP +T L A + G + +++ L
Sbjct: 79 ARAGIFLAFQYPVE--------IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELL 130
Query: 149 ALS-NVARRNISE-LTPSEHRRVVIGTQLVKDPVLLLLDEPT--VNLDPLSTYLIVSMLS 204
L R ++E + E +R I L+ +P L +LDEP +++D L IV+
Sbjct: 131 GLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALK---IVAEGI 187
Query: 205 SYAKRKSRAVLL 216
+ + + R VL+
Sbjct: 188 NALREEGRGVLI 199
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDG 89
+G+ Q LK I+L++ +V A++G G GK L ++R S GE++LDG
Sbjct: 13 YGDFQA---LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69
Query: 90 T-----PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNAR 140
+ + G V + + P +++ + Y GP+ + +
Sbjct: 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAY------GPRTHGIKDKKKLDEI 122
Query: 141 IRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
+ + L AL + +++ L+ + +R+ I L +P +LL+DEPT LDP+ST
Sbjct: 123 VEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPIST 182
Query: 197 YLIVSMLSSYAKRKSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
L + L K+ V++T M++ D+TA+ G+++ G T
Sbjct: 183 -LKIEELIQELKKDYTIVIVTHNMQQASR----ISDKTAFFLNGEIVEFGDT 229
|
Length = 250 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 10/180 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQ 98
L ++SL V G++ V+G+ G+GK L+ ++ T+ G +I+DG ++ +L +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS-GSVIVDGQDLTTLSNSELTK 79
Query: 99 T--TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
G + +L+ S TV + A L + ++ ++ ++LA + L +
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNV--ALPLELDNTPKDEIKR-KVTELLALVGLGDKHDS 136
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
S L+ + +RV I L +P +LL DE T LDP +T I+ +L +R +LL
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 2e-11
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 23/187 (12%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMSPQ-- 95
+++ D+S + GE +LG G+GK I+R G RG+I + G P+ +
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGK----STIARMLLGMISPDRGKITVLGEPVPSRAR 73
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTL-----YYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
L + G V +L P TV + L Y+ +R + I +L L
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMS-------TREIEAV-IPSLLEFARL 125
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ A ++ L+ RR+ + L+ DP LL+LDEPT LDP + +LI L S R
Sbjct: 126 ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR- 184
Query: 211 SRAVLLT 217
+ +LLT
Sbjct: 185 GKTILLT 191
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-11
Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 24/235 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQT 99
LK I++ ++ GEV A+LG G+GK L + I + SS G I+ DG P+ +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSS----GRILFDGKPID----YS 73
Query: 100 TCGYVNHRTDL-IPSLTVEQTLYYAA---HLSIGP---QVSRYVRNARIRQVLADLALSN 152
G + R + + + L+ A+ +S G ++ R+ L + +
Sbjct: 74 RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH 133
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ + L+ + +RV I LV +P +L+LDEPT LDP+ I+ +L K
Sbjct: 134 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGL 193
Query: 213 AVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLML---EYFRSIGFPCPEL 263
+++ D++P + D + G +I G + + E R + P +
Sbjct: 194 TIIIATHD--IDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEMLRKVNLRLPRI 246
|
Length = 283 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 3e-11
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPM-----SPQ 95
+KD+S EVR GE++ + G G+G+ L+E IS R+ G I+L+G + +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSPRE 330
Query: 96 LFQTTCGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY-VRNARIRQVLADLALS 151
+ YV H L+ L++ + L H P + IR+ +L
Sbjct: 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH-DKKPFSRGGFLDRRAIRKFAREL--- 386
Query: 152 NVAR---RNISELTPSEH------RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
+ R S P+ +++++ +L + P LL+ +PT LD + I
Sbjct: 387 -IEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445
Query: 203 LSSYAKRKSRAVLL 216
L + +AVLL
Sbjct: 446 LLE-LRDAGKAVLL 458
|
Length = 501 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 15/218 (6%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLF 97
LI+ + + PG + +LG GSGK LL +++ + G + L G +S +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG-ALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADLALSN 152
V +D LTV L P S + + A + + LA LS+
Sbjct: 74 ARRVALVEQDSDTAVPLTVRD----VVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH 129
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+A R++S L+ E +RV + L ++P LLLLDEPT +LD + ++++ A
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV- 188
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
V+ + + + D L G ++ AGP R +L
Sbjct: 189 TVVAALHD-LNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (158), Expect = 3e-11
Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 14/229 (6%)
Query: 24 VETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG 83
+E G +++ +L +KD SL + GE+ ++G GSGK ++ +++R TRG
Sbjct: 25 IEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRG 83
Query: 84 EIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV 136
++++DG ++ ++ + V L+P +TV + L+
Sbjct: 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEE--- 140
Query: 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL-S 195
R + L + L N A EL+ +RV + L +P +LL+DE LDPL
Sbjct: 141 RREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200
Query: 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
T + ++ AK + V ++ + + + DR A + G+++ G
Sbjct: 201 TEMQDELVKLQAKHQRTIVFISHD--LDEAMRIGDRIAIMQNGEVVQVG 247
|
Length = 400 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 3e-11
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 31/228 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDG-----TPMS 93
LK+I+L++ +V A++G G GK LL ++R G+++ DG +
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADLA 149
+ G V + + P + Y GP++ + + + + L A
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAY-------GPRLHGIKDKKELDEIVEESLKKAA 129
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + + L+ + +R+ I L +P +LLLDEPT LDP++T I ++
Sbjct: 130 LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
Query: 206 YAKRKSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
K+ + V++T M++ DRTA+ G+L+ GPT +
Sbjct: 190 LKKKYT-IVIVTHNMQQAAR----ISDRTAFFYDGELVEYGPTEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 34/190 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMS----PQ 95
L D+SL V PGE+ ++G G+GK +++VI +G TR G ++ GT ++ Q
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVI----TGKTRPDEGSVLFGGTDLTGLPEHQ 73
Query: 96 L--------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHL------SIGPQVSRYVRNARI 141
+ FQ + +LTV + L A S+ ++S ++ RI
Sbjct: 74 IARAGIGRKFQK--------PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKD-RI 124
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+VL + L++ A R L+ + + + IG L++DP LLLLDEP + T
Sbjct: 125 EEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 202 MLSSYAKRKS 211
+L S A + S
Sbjct: 185 LLKSLAGKHS 194
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 11/161 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTR--GEII--LDGTPMSP 94
+LK ISL++ GE++A++G+ GSGK L+ + + + +SGT R G+ + LD ++
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA- 81
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
QL + G++ R L+ LT Q + A + + R R R +++L L L +
Sbjct: 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRLLRAQELLQRLGLEDRV 138
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
S+L+ + +RV I L+ ++L DEPT LD S
Sbjct: 139 EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
|
Length = 648 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 4e-11
Identities = 58/269 (21%), Positives = 105/269 (39%), Gaps = 28/269 (10%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGY 103
+DIS E+ GE++ LG+ G+GK L++++ T+ G++ ++G P + Y
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTS-GKVRVNG--KDPFRRREE--Y 95
Query: 104 VNH-------RTDLIPSLTVEQTLYYAAHL-SIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ + L L +L + I R+ + L L +
Sbjct: 96 LRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFA----ERLDFLTEILDLEGFLK 151
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+ +L+ + R + L+ P +L LDEPTV LD + I L Y + + VL
Sbjct: 152 WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF---RSIGFPCPELENPL----M 268
LT D+ DR + G L++ G + E F + EL+ +
Sbjct: 212 LTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSV---ELKQAKSLSQL 267
Query: 269 YYLCLSTVDRRSRERFIESNNQIVALVEK 297
L T++ + S + ++ K
Sbjct: 268 ALLGDVTIEEGLNIKNDVSREESADIIAK 296
|
Length = 325 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 4e-11
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 19/168 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG------------ 89
+LK +SL+ G+V++++GS GSGK L I+ + G I ++G
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQ 79
Query: 90 -TPMSP---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
P Q +T G V +L +TV + + A +G VS+ R + L
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG--VSKAEAIERAEKYL 137
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
A + ++ A + L+ + +RV I L +P ++L DEPT LDP
Sbjct: 138 AKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185
|
Length = 256 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-11
Identities = 42/172 (24%), Positives = 78/172 (45%), Gaps = 17/172 (9%)
Query: 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQL 96
+IL +ISL ++PGEV+ ++G GSGK L ++I R G +++DG ++ P
Sbjct: 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAW 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR-------IRQVLADLA 149
+ G V L + ++ + A G + R + A+ I ++
Sbjct: 74 LRRQVGVVLQENVLF-NRSIRDNI---ALADPGMSMERVIEAAKLAGAHDFISEL--PEG 127
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
+ + L+ + +R+ I L+ +P +L+ DE T LD S + I+
Sbjct: 128 YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMR 179
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-11
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 69 LLEVISRRSSGTTRGEIILDGTPM----SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124
LL++I+ T G I+LDG S +L + G V L P LTV + L++
Sbjct: 3 LLKLITGLLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFGL 61
Query: 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRN-ISELTPSEHRRVVIGTQLVKDPVLLL 183
+AR + L + L + R + L+ + +RV I L+K P LLL
Sbjct: 62 R--------DKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLL 113
Query: 184 LDEPT 188
LDEPT
Sbjct: 114 LDEPT 118
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 6e-11
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMS---PQLFQ 98
+S + GE++ + G G+GK +LL ++ +G R GE++ G P+ + Q
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRIL----AGLARPDAGEVLWQGEPIRRQRDEYHQ 74
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
Y+ H+ + LT + L + L + + + LA + L+ +
Sbjct: 75 DLL-YLGHQPGIKTELTALENLRFYQRL------HGPGDDEALWEALAQVGLAGFEDVPV 127
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+L+ + RRV + + L +LDEP +D + ++L+ +A++ +L T
Sbjct: 128 RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTT 186
|
Length = 204 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 6e-11
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 11/188 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------P 94
IL + L V+ GE +A++G GSGK LL +++ G++ GE+ L G P+
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSS-GEVSLVGQPLHQMDEEARA 83
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+L G+V LIP+L + + A L + SR RN + +L L L
Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSRN-GAKALLEQLGLGKRL 140
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
++L+ E +RV + P +L DEPT NLD + I +L S + +
Sbjct: 141 DHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTL 200
Query: 215 LLTMEKPR 222
+L +
Sbjct: 201 ILVTHDLQ 208
|
Length = 228 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-11
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 15/160 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L + L VR G ++ ++G G+GK LL I+ + T G +++ G + L
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTA-GTVLVAGDDVE-ALSARAA 75
Query: 102 GY----VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADLALSN 152
V T L V Q + P SR+ A + + + ++
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRT----PHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
A R ++ L+ E +RV++ L + +LLLDEPT +LD
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171
|
Length = 402 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-11
Identities = 46/200 (23%), Positives = 75/200 (37%), Gaps = 54/200 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMS---PQ 95
+L+++S + PGE LA++G GSGK L +I G T G + LDG +S P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLI----LGLLRPTSGRVRLDGADISQWDPN 72
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
GY+ PQ D S
Sbjct: 73 ELGDHVGYL-------------------------PQ--------------DDELFSGSIA 93
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
NI L+ + +R+ + L +P +L+LDEP +LD + +++ + ++
Sbjct: 94 ENI--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIV 151
Query: 216 LTMEKPRSDVLPFLDRTAYL 235
+ R + L DR L
Sbjct: 152 IAH---RPETLASADRILVL 168
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 8e-11
Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 20/220 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRA----LLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+++D+SL V GE++ +LG G+GK ++ ++ R + G II+D +S
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDA-----GNIIIDDEDISLLPL 72
Query: 98 QTTC----GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
GY+ + L+V L A L I +S R R +++ + + ++
Sbjct: 73 HARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEFHIEHL 130
Query: 154 ARRNISE-LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
R ++ + L+ E RRV I L +P +LLDEP +DP+S I ++ + +
Sbjct: 131 -RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGL 188
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG-PTRLMLE 251
VL+T R + L +R + G LI G PT ++ +
Sbjct: 189 GVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (151), Expect = 9e-11
Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 23/220 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-SPQL 96
+LK+I+++ ++ A++G G GK LL ++R S G ++LD + SP L
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL 78
Query: 97 ----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ G V + + P + + L Q SR + + + L AL +
Sbjct: 79 DVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQ-SRL--DEVVEKSLRQAALWD 135
Query: 153 VARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ N+ + L+ + +R+ I L +P ++L+DEP LDP+ST I ++ +
Sbjct: 136 EVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQ 195
Query: 209 RKSRAVLL--TMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
+ A++ + R+ D T +L GDL+ G T
Sbjct: 196 NYTIAIVTHNMQQAARAS-----DWTGFLLTGDLVEYGRT 230
|
Length = 251 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-10
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 32/194 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVI--SRRSSGTTRGEIILDGTPM---SP-QL 96
++D+S VR GE+L + G G+G+ L + +R +S GEI+LDG P+ SP
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASS---GEILLDGKPVRIRSPRDA 331
Query: 97 FQTTCGYV--NHRTD-LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ YV + +++ L+ +++ + + A+ + + + R +
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRR--GLIDRRKERALAER------ 383
Query: 154 ARRNISELTPSEHRR-----------VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
R + TPS + VV+ L DP +L+LDEPT +D + I +
Sbjct: 384 YIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443
Query: 203 LSSYAKRKSRAVLL 216
+ A + +A+L+
Sbjct: 444 IRELAA-EGKAILM 456
|
Length = 500 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 22/230 (9%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDG 89
+GN + L ISL+ E+ A++G G GK L ++R + GEI +G
Sbjct: 14 YGNYEA---LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70
Query: 90 TPM-SPQL----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
+ ++ + G V + P +V + Y L I + + + R+ +
Sbjct: 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEES 127
Query: 145 LADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L A+ + RN + + +R+ I L P ++LLDEPT LDP+S+ I
Sbjct: 128 LKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIE 187
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
L K + +++T ++ + D+TA+L GDLI AGPT M
Sbjct: 188 ETLMEL-KHQYTFIMVTHNLQQAGRIS--DQTAFLMNGDLIEAGPTEEMF 234
|
Length = 251 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-10
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGT--PMSPQLF 97
+L +++ + GE++ ++G G GK LL + +G + GE+ L+ M P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA-A 75
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
Q G + L P L+V Q L +A + + R L L ++
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQD 131
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L+ + RV + L+ P LLLDEP LD
Sbjct: 132 PATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+LKD+S + G+ +A++G G+GK LL++++ + G + + T
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLS-GTVKVGET--------VK 386
Query: 101 CGYVN-HRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNI 158
GY + HR +L P TV + LS + +R L + + +
Sbjct: 387 IGYFDQHRDELDPDKTVLE------ELS---EGFPDGDEQEVRAYLGRFGFTGEDQEKPV 437
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L+ E R+++ L++ P LLLLDEPT +LD
Sbjct: 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQL 96
+I KDI+L++ GE + +G G GK LL +I+ T G++ + M+ P
Sbjct: 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPA- 73
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G V L P L+V + + + L+ + N R+ QV L L+++ R
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDR 129
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L+ + +RV IG LV +P + LLDEP NLD
Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-- 91
FG + LK ++L V PGE+ A+LG G+GK L++V+S T+G I ++
Sbjct: 15 FGPVHA---LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYN 70
Query: 92 -MSPQL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS---IGPQVSRYVRNARIRQVLA 146
+ +L Q G + +I LTV + LY HL+ G + + +R A
Sbjct: 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDW---REMRVRAA 127
Query: 147 DLALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ L + ++ E L+ S + + I L+ D ++++DEPT +L
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGT-----PMS 93
LK+I+L++ +V A +G G GK LL +R GEI+LDG
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
L + G V + P +++ + + L ++SR + R+ L AL N
Sbjct: 89 IALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNE 145
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ + + L+ + +R+ I + P +LLLDEP LDP+ST I +++ K+
Sbjct: 146 VKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQ 204
Query: 210 KSRAVLLT--MEKP-RSDVLPFLDRTAYLCLGDLIYAGPT 246
V++T M++ R D TA++ LG+LI G T
Sbjct: 205 DYTVVIVTHNMQQAARCS-----DYTAFMYLGELIEFGNT 239
|
Length = 260 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLF 97
+L+DISL++ GE +A++G GSGK L+ +I R + G I++DG + L
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDS-GRILIDGHDVRDYTLASL- 74
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL---SNVA 154
+ G V+ L + TV + + Y + +V R A + + +L + +
Sbjct: 75 RRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIG 133
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R + L+ + +R+ I L+KDP +L+LDE T LD S L+
Sbjct: 134 ERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLV 177
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 33/227 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPM-SPQL- 96
L +SL+ P E+ A++G GSGK LL I+R + T G I+ +G + SP+
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-------IGPQVSRYVRNARI----R 142
+ G V + + P +++ + + Y L + V + ++ A I +
Sbjct: 81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK 139
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
L D AL L+ + +RV I L P ++LLDEPT LDP+S I
Sbjct: 140 DRLHDSALG---------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
L K +L+T ++ + DRT + GDLI T+ M
Sbjct: 191 LLGL-KDDYTMLLVTRSMQQASRIS--DRTGFFLDGDLIEYNDTKQM 234
|
Length = 252 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 2e-10
Identities = 59/221 (26%), Positives = 96/221 (43%), Gaps = 21/221 (9%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIIL---DGTPMS 93
LK+I++ V +V A++G G GK L +R GEIIL + +S
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89
Query: 94 PQL----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
P++ + V + + P E Y L I R + R+ L + A
Sbjct: 90 PEVDPIEVRMRISMVFQKPNPFPKSIFENVAY---GLRIRGVKRRSILEERVENALRNAA 146
Query: 150 LSNVARRNISEL----TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + +L + + +R+ I L DP +LL DEPT LDP++T I ++S
Sbjct: 147 LWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD 206
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
K++ +L + D TAY+ +G+LI G T
Sbjct: 207 L---KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244
|
Length = 265 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 10/165 (6%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ FG Q +L DISL++ G+++A+LG GSGK LL +I+ T+ G I GT
Sbjct: 10 KSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTS-GHIRFHGTD 65
Query: 92 MSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLAD 147
+S G+V L +TV + A L++ P+ R A++ Q+L
Sbjct: 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNI--AFGLTVLPRRERPNAAAIKAKVTQLLEM 123
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L+++A R ++L+ + +RV + L +P +LLLDEP LD
Sbjct: 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 19/221 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPM-SPQL- 96
LK I L+ E+ A++G G GK L ++R + T G + L G + +P
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V + + P E +Y L + + V + + L A+ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIY---GLRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ ++ E L+ + +RV I L P ++LLDEPT LDP+S+ I +ML +
Sbjct: 138 VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RD 196
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+ +L+T ++ + D+TA+ G+LI T+ M
Sbjct: 197 QYTIILVTHSMHQASRIS--DKTAFFLTGNLIEFADTKQMF 235
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 27/159 (16%)
Query: 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQ----- 95
L V GE +A+LG G+GK LL +I +G G + L+G T P
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLI----AGFLTPASGSLTLNGQDHTTTPPSRRPVS 74
Query: 96 -LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
LFQ +L LTV Q + L+ G +++ R ++ + + + ++
Sbjct: 75 MLFQ--------ENNLFSHLTVAQNI--GLGLNPGLKLNAAQR-EKLHAIARQMGIEDLL 123
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R +L+ + +RV + LV++ +LLLDEP LDP
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
|
Length = 232 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 3e-10
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 27/225 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLE----VISRRSSGTTRGEIILDGTPMSPQL-- 96
LK+I+L + EV A++G G GK ++ +I + GE+ +G+ +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADLA 149
+ G V + + P + Y GP++ ++ + + L D+A
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAY-------GPRIHGTKNKKKLQEIVEKSLKDVA 140
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + L+ + +R+ I L +P +LL+DEPT LDP+ST I ++
Sbjct: 141 LWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK 200
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
K K V++T ++ + D+TA+ +G+L+ T M
Sbjct: 201 L-KEKYTIVIVTHNMQQAARVS--DQTAFFYMGELVECNDTNKMF 242
|
Length = 259 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 35/225 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPMS-PQL- 96
L DIS+ + V A +G G GK LL +R + + GEI LDG + ++
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100
Query: 97 ---FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V R + P E +Y G ++ + N R+ + +L
Sbjct: 101 VAELRRRVGMVFQRPNPFPKSIYENVVY-------GLRLQG-INNRRVLDEAVERSLRGA 152
Query: 154 A---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A N L+ + +R+VI + +P +LLLDEPT LDP+ST L + L
Sbjct: 153 ALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPIST-LKIEELI 211
Query: 205 SYAKRKSRAVLLT--MEK-PRSDVLPFLDRTAYLCLGDLIYAGPT 246
+ K K V++T M++ R D TA++ +G L+ G T
Sbjct: 212 TELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDT 251
|
Length = 272 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-10
Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 15/160 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
IL D+SL + G++ A++G G GK LL+ +R + + G + L P+S +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQS-GTVFLGDKPIS----MLSS 71
Query: 102 GYVNHRTDLIPS-------LTVEQTLYY--AAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ R L+P +TV + + Y + LS+ ++S AR+ Q + +++
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDN-ARVNQAMEQTRINH 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+A R +++L+ + +R + L +D ++LLDEPT LD
Sbjct: 131 LADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
|
Length = 255 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 56/237 (23%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGT-----PM 92
LKDI+L++ +V A++G G GK LL ++R GE++LDG +
Sbjct: 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR---NARIRQVLADLA 149
+ G V + + P ++Y +++ G ++ + + L A
Sbjct: 82 DVVELRRRVGMVFQKPNPFP-----MSIY--DNVAYGLRLHGIKDKELDEIVESSLKKAA 134
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY----LIVS 201
L + + + + L+ + +R+ I L P +LL+DEPT LDP+ST LI
Sbjct: 135 LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE 194
Query: 202 MLSSY-----------AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ Y A R S D TA+ LG+L+ GPT
Sbjct: 195 LKKKYTIVIVTHNMQQAARVS------------------DYTAFFYLGELVEFGPTD 233
|
Length = 253 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 5e-10
Identities = 51/227 (22%), Positives = 104/227 (45%), Gaps = 27/227 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLF 97
+K++++++ ++ A++G G GK LL I+R + G+I G +
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 98 QTT-----CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADL 148
T G V + P ++Y +++ GP++ S++ + + + L
Sbjct: 78 DVTEYRKKVGMVFQKPTPFP-----MSIY--DNVAFGPRIHGVKSKHKLDRIVEESLKKA 130
Query: 149 ALSNVAR----RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
AL + + + + L+ + +R+ I L +P ++LLDEPT LDP++T I +L
Sbjct: 131 ALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLE 190
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ + ++ + D A++ G+LI GPTR ++E
Sbjct: 191 ELSENYTIVIV---THNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSPQLFQTT- 100
L ++SL+VR GE++++ G G+GK L++V+S GT GEII +G + + T
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 101 -CGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARR 156
G + L+ L+V + ++ ++ G + R +++LA L L N A
Sbjct: 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP 140
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ L + + V I L K LL+LDEPT +L
Sbjct: 141 -VGNLGLGQQQLVEIAKALNKQARLLILDEPTASL 174
|
Length = 506 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-10
Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 19/195 (9%)
Query: 29 CFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD 88
Q V A IL +IS +R GE + G G GK LL++++ S T G ++ +
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-PTSGTLLFE 67
Query: 89 GTP---MSPQLFQTTCGYVNHRTDLIPSL---TVEQTLYYAAHL-SIGPQVSRYVRNARI 141
G + P++++ Y P+L TV L + + + P + ++ +
Sbjct: 68 GEDISTLKPEIYRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDD--- 120
Query: 142 RQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L AL + +NI+EL+ E +R+ + L P +LLLDE T LD + + +
Sbjct: 121 ---LERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177
Query: 201 SMLSSYAKRKSRAVL 215
++ Y + ++ AVL
Sbjct: 178 EIIHRYVREQNIAVL 192
|
Length = 225 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 22/160 (13%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVN 105
+S EVR GE+L ++G G+GK LL ++ G+ G I G P+ +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS--GSIQFAGQPLE-AW--SAAELAR 69
Query: 106 HRTDLI------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
HR L ++ V Q Y H + + + +V L L + R+++
Sbjct: 70 HRAYLSQQQTPPFAMPVFQ--YLTLHQPDKTRT--EAVASALNEVAEALGLDDKLGRSVN 125
Query: 160 ELTPSEHRRV-VIGTQLVKDPV------LLLLDEPTVNLD 192
+L+ E +RV + L P LLLLDEP +LD
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD 165
|
Length = 248 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 7e-10
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 30/233 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDG-----TPM 92
IL DI+L++ EV A +G G GK L +R + +GE+ +DG
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ L + G V + + P + Y GP++ +N + + + +L++
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAY-------GPKLHGLAKNKKKLDEIVEKSLTS 132
Query: 153 VA---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
V + + EL+ + +R+ I + P +LL+DEP LDP++T +I +++
Sbjct: 133 VGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLI 192
Query: 204 SSYAKRKSRAVLL-TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255
K + V+ +M++ + DR A+ G ++ T+ + + +S
Sbjct: 193 QELKKNFTIIVVTHSMKQAKK----VSDRVAFFQSGRIVEYNTTQEIFKNPQS 241
|
Length = 251 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 26/188 (13%)
Query: 45 DISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSP-QLFQT 99
D++L ++ GEVLA++G GSGK A+L ++ + T GEI+LDG P+ P +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT-QTSGEILLDGRPLLPLSIRGR 62
Query: 100 TCGYV--NHRTDLIPSLTVEQ----TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ N RT P T+ TL LS + A I + L + L +
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQAR-------ALILEALEAVGLPDP 115
Query: 154 ARRNISELTPSEH-----RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ + P + +RV+I L+ +P L+ DEPT +LD ++ ++ +L +
Sbjct: 116 EE--VLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 209 RKSRAVLL 216
+LL
Sbjct: 174 LFGTGILL 181
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-10
Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQ 98
+L +SL G+V ++G GSGK LL+++ R + GEI+LD P+ S + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE-GEILLDAQPLESWSSKAFA 84
Query: 99 TTCGYVNHRTDLIPSLTVEQTL---YYAAHLSIGPQVSRYVRN--ARIRQVLADLALSNV 153
Y+ + +TV + + Y H ++G R+ ++ + ++ + L +
Sbjct: 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALG----RFGAADREKVEEAISLVGLKPL 140
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
A R + L+ E +R I + +D LLLDEPT LD
Sbjct: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 27/226 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPMS----- 93
L DI++ + V A++G G GK LL +R G+I+ +G +
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNARIRQVLADLA 149
+ G V R + P E Y GP++ ++ + + + L A
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAY-------GPRIHGEKNKKTLDTIVEKSLKGAA 134
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + + L+ + +R+ I L +P ++L+DEP LDP++T I ++
Sbjct: 135 LWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED 194
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
K + ++ + + V D T ++ LG LI T + E
Sbjct: 195 LKKEYTVIIVTHNMQQAARV---SDYTGFMYLGKLIEFDKTTQIFE 237
|
Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 15/141 (10%)
Query: 58 VLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMS---PQLFQTTCGYVNHRTDLI 111
+LG G GK LL +++ + SG I+LDG ++ P L V L
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSG----SIMLDGEDVTNVPPHL--RHINMVFQSYALF 54
Query: 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVI 171
P +TVE+ + + + +V R R+ + L + L A R +L+ + +RV +
Sbjct: 55 PHMTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVAL 111
Query: 172 GTQLVKDPVLLLLDEPTVNLD 192
LV P +LLLDEP LD
Sbjct: 112 ARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 61/256 (23%), Positives = 100/256 (39%), Gaps = 40/256 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI------SRRSSGTT-RGEIILDGTPM-- 92
IL+D+SL + PG V A+LG G+GK LL+ + G G++ L+G P+
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 93 --SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL-SIG--PQVSRYVRNARIRQVLAD 147
+P+L + ++P + A + +G P R +A
Sbjct: 76 IDAPRLAR--------LRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 148 LAL-----SNVARRNISELTPSEHRRVVIGTQLVK---------DPVLLLLDEPTVNLDP 193
AL + + R+++ L+ E RV L + P LLLDEPT LD
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE-- 251
+ ++ + A+ + VL + P DR A L G ++ G +L
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNL-AARHADRIAMLADGAIVAHGAPADVLTPA 246
Query: 252 -YFRSIGFPCPELENP 266
R GF ++
Sbjct: 247 HIARCYGFAVRLVDAG 262
|
Length = 272 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG Q A +L ++SL + GE + +LG G GK L ++ +G + G +
Sbjct: 18 FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLY 76
Query: 94 P-------------QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
QL FQ + VN P +TV Q + L + + A
Sbjct: 77 QLDRKQRRAFRRDVQLVFQDSPSAVN------PRMTVRQII--GEPLRHLTSLDESEQKA 128
Query: 140 RIRQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
RI ++L + L S A + +L+ + +R+ I L P L++LDE NLD + +
Sbjct: 129 RIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAV 188
Query: 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241
I+ +L + A L R V F R A + G ++
Sbjct: 189 ILELLRKLQQAFGTAYLFITHDLRL-VQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
ILK +SL + PG+ +A++GS G GK +LLE R T GEI+LDG + +
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE----RFYDPTSGEILLDGVDIRDLNLR 73
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNV 153
++ G V+ L T+ + + Y + +V + A I + L +
Sbjct: 74 WLRSQIGLVSQEPVLF-DGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTL 132
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
S+L+ + +R+ I L+++P +LLLDE T LD S L+
Sbjct: 133 VGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLV 178
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 1e-09
Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 17/212 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR-GEIILDGTPMSPQL-- 96
L DI LEV+ G A++G GSGK LL+ ++ + + G G+I++ T ++
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALSN- 152
+ G V + S E+T+ ++ GPQ + + + L + L++
Sbjct: 82 VRKKVGVVFQFPE---SQLFEETVL--KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE 136
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
++ EL+ + RRV I L +P +L+LDEPT LDP + ++ + S +
Sbjct: 137 FWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQT 196
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
VL+T DV + D L G +I G
Sbjct: 197 VVLVT--HLMDDVADYADYVYLLEKGHIISCG 226
|
Length = 288 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 30/228 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT----RGEIILDGTPMSPQ--- 95
L DI+L + ++ A++G G GK L ++R + + GE++LDG + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 96 --LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V + + P + Y GP++ +++ + + + AL
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAY-------GPRIHG-IKDKKELDKIVEWALKKA 131
Query: 154 A---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A +++ +L+ + +R+ I + P ++L+DEPT LDP+ST I ++
Sbjct: 132 ALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMV 191
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT-RLMLE 251
K + ++ + S V D TA+ +GDLI T ++ LE
Sbjct: 192 ELKKEYTIVIVTHNMQQASRV---SDYTAFFLMGDLIEFNKTEKIFLE 236
|
Length = 251 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 2/149 (1%)
Query: 346 SFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPF 405
++R GL+F SI + F S + F R +E LYS ++L I LP
Sbjct: 48 GGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPI 107
Query: 406 SILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSS 465
S+L I++ GL + F F L+L L A L + + + S A+ +
Sbjct: 108 SLLQAIIFLLIVYFMVGL-PVSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGP 166
Query: 466 YINIIFLVLGSGYLRSFRSMAEWLVYMSY 494
+ + L+L SG+ SM WL ++ Y
Sbjct: 167 LLLLPLLLL-SGFFIPVDSMPGWLQWIYY 194
|
Length = 210 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------- 95
L ++++E+ GE + ++G GSGK L++ ++ T+ G+II+DG ++ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTS-GKIIIDGVDITDKKVKLSDI 81
Query: 96 ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLA 146
+FQ Y ++ E+T+ ++ GP +S R+++ +
Sbjct: 82 RKKVGLVFQ----YPEYQL-------FEETIE--KDIAFGPINLGLSEEEIENRVKRAMN 128
Query: 147 DLALSNVARRNIS--ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ L ++ S EL+ + RRV I + +P +L+LDEPT LDP I++ +
Sbjct: 129 IVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 205 SYAKRKSRAVLL---TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFR------S 255
K + ++L +ME DV DR + G G R E F+ S
Sbjct: 189 ELHKEYNMTIILVSHSME----DVAKLADRIIVMNKGKCELQGTPR---EVFKEVETLES 241
Query: 256 IGFPCPEL 263
IG P++
Sbjct: 242 IGLAVPQV 249
|
Length = 287 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 47/164 (28%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDG 89
FG + + +S ++ GE L ++G G GK R +L + T GEI+ +G
Sbjct: 20 FGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-----EPTSGEILFEG 74
Query: 90 TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
++ ++S+ R R+ ++L +
Sbjct: 75 KDIT-------------------------------------KLSKEERRERVLELLEKVG 97
Query: 150 LS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L R EL+ + +R+ I L +P L++ DEP LD
Sbjct: 98 LPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
|
Length = 268 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 9/165 (5%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLF 97
L ++L VRPGE +A++G G+GK L +++ R G I+LDG + P
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAEL 412
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA---LSNVA 154
+ V L + +V + + Y + +V R A + ++ L + +
Sbjct: 413 RARMALVPQDPVLF-AASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
R ++ L+ + +R+ I ++KD +LLLDE T LD S L+
Sbjct: 472 ERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLV 515
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 56/233 (24%), Positives = 105/233 (45%), Gaps = 29/233 (12%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
R++ I ILKDI++++ + ++G GSGK LL+V++R +I +DG
Sbjct: 15 RLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKV 73
Query: 92 M--SPQLFQTTC-------GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
+ +FQ G V + + P L++ + Y P S ++ R
Sbjct: 74 LYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY-------PLKSHGIKEKREI 126
Query: 143 QVLADLALSNVA-------RRN--ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ + + L V R N S+L+ + +R+ I L P +LL+DEPT +D
Sbjct: 127 KKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
+++ I +++ + A+++ P+ V D A+L G+L+ G +
Sbjct: 187 VNSQAIEKLITEL--KNEIAIVIVSHNPQQ-VARVADYVAFLYNGELVEWGSS 236
|
Length = 257 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 27/216 (12%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVI----SRRSSGTTRGEIILDGTPMSPQ---- 95
+DIS V GE+L G GSG+ L+ + R GEI L+G +SP+
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAG-----GEIRLNGKDISPRSPLD 334
Query: 96 LFQTTCGYV--NHR-TDLIPSLTVEQTLYYAAHLSIGP--------QVSRYVRNARIRQV 144
+ Y+ + R P+ ++ Q + + L G R A ++
Sbjct: 335 AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRE 394
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L +V +NI+EL+ ++V+I L P +++ DEPT +D + I ++
Sbjct: 395 LLALKCHSV-NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240
A ++++ E P +++ DR A C G L
Sbjct: 454 QLADDGKVILMVSSELP--EIITVCDRIAVFCEGRL 487
|
Length = 510 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 30/164 (18%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVI---SRRSSGTTRGEIILDGT 90
FG + +L D+SLE++PG++L +LG G+GK L+ V+ G +
Sbjct: 14 FGQRR---VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK-------- 62
Query: 91 PMSPQLFQTTCGYVNHRTDLIPS--LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
+ +L GYV + L + LTV + L ++ + I L +
Sbjct: 63 -RNGKL---RIGYVPQKLYLDTTLPLTVNRFL----------RLRPGTKKEDILPALKRV 108
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++ + +L+ E +RV++ L+ P LL+LDEPT +D
Sbjct: 109 QAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-09
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 14/208 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMSPQL-FQ 98
LK IS + GE++ +G G+GK L+++S + +SG R + P + F
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVR---VAGLVPWKRRKKFL 93
Query: 99 TTCGYV-NHRTDLIPSLTVEQTLYYAAHL-SIGPQVSRYVRNARIRQVLADLALSNVARR 156
G V +T L L V + Y A + + P +R+ + R+ ++ L L +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPP--ARFKK--RLDELSELLDLEELLDT 149
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ +L+ + R I L+ +P +L LDEPT+ LD ++ I + L Y + + VLL
Sbjct: 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
T + D+ R + G L+Y G
Sbjct: 210 TSHYMK-DIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 22/222 (9%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQ 98
L +SLE+ G+ + V+GS G+GK LL I+ T G+I++DG T S
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRA 79
Query: 99 TTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLA--DLALS 151
V + P LT+E+ L A +S R + R+ LA L L
Sbjct: 80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE 139
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS--YAKR 209
N I L+ + + + + + P +LLLDE T LDP T V L++ +
Sbjct: 140 NRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDP-KTAEFVMELTAKIVEEH 198
Query: 210 KSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLI--YAGPTR 247
K +++T ME D L + +R L G ++ G +
Sbjct: 199 KLTTLMVTHNME----DALDYGNRLIMLHSGKIVLDVTGEEK 236
|
Length = 263 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+K +S +R G+ LA++G GSGK L ++++ T+ GEI+++ P+ +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GEILINDHPLHFGDYSFRSK 87
Query: 103 YV-----NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARR 156
+ + T L P L + Q L L + + R +I + L + L + A
Sbjct: 88 RIRMIFQDPNTSLNPRLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY 145
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L P + +RV + L+ P +++ DE +LD
Sbjct: 146 YPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR---GEIILDGTPMSP- 94
+L+++SL V GE + + G GSGK LL + G +D P
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 95 ---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
++ +TT GYV+ +IP ++ L A + V R V A+ +L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRL--- 139
Query: 152 NVARRNISELTPS-----EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
N+ R + L P+ E +RV I + D +LLLDEPT +LD + ++V ++
Sbjct: 140 NLPER-LWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE- 197
Query: 207 AKRKSRAVL 215
AK + A++
Sbjct: 198 AKARGAALV 206
|
Length = 235 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 22 ALVETGSCFQRVFGNIQTALIL--KDISLEVRPGEVLAVLGSKGSGKRALLE------VI 73
AL++ G + + +T L+L + SL++ GE+ ++G GSGK LL +
Sbjct: 19 ALLDQGKTREEI--LDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPV 76
Query: 74 SRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129
SR S G+ +D L V + L+P TVE+ + + +
Sbjct: 77 SRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQ-- 134
Query: 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189
+ + R R+ + L + L+ A R EL+ +RV + + +LL+DEP
Sbjct: 135 -GMPKAERRKRVDEQLELVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFS 193
Query: 190 NLDPL 194
LDPL
Sbjct: 194 ALDPL 198
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL---LEVISRRSSGTTRGEIILDGTPM-----SP 94
LK I+ + GE++A+LG G+GK L I + +SG E+++ G P+ S
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG----EVLIKGEPIKYDKKSL 73
Query: 95 QLFQTTCGYV-NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ T G V + D + + TVE+ + + L++G +S+ R+++ L + +
Sbjct: 74 LEVRKTVGIVFQNPDDQLFAPTVEEDVAFGP-LNLG--LSKEEVEKRVKEALKAVGMEGF 130
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ L+ + +RV I L P +++LDEPT LDP+ I+ +L K
Sbjct: 131 ENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE 186
|
Length = 275 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 5e-09
Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 34/229 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTC 101
L + L + GE++A+LG GSGK LL R SG G D + S +L T
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLL----RHLSGLITG----DKSAGSHIELLGRTV 71
Query: 102 -----------------GYVNHRTDLIPSLTVEQTLYYAAHLSIGP---QVSRY---VRN 138
GY+ + +L+ L+V + + A L P + +
Sbjct: 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA-LGSTPFWRTCFSWFTREQK 130
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198
R Q L + + + A + +S L+ + +RV I L++ ++L DEP +LDP S +
Sbjct: 131 QRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARI 190
Query: 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
++ L + V++T+ + L + +R L G + Y G ++
Sbjct: 191 VMDTLRDINQNDGITVVVTLHQVDY-ALRYCERIVALRQGHVFYDGSSQ 238
|
Length = 262 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 6e-09
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQT 99
L ++SL +R GE +A++G GSGK LL++++ T G ++LDGT + P +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRR 78
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-- 157
GYV L T+ + A + RI + +++ ++
Sbjct: 79 NIGYVPQDVTLF-YGTLRDNITLGA---------PLADDERILRAAELAGVTDFVNKHPN 128
Query: 158 -----ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
I E L+ + + V + L+ DP +LLLDEPT +D S + L
Sbjct: 129 GLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG 188
Query: 209 RKS------RAVLLTM 218
K+ R LL +
Sbjct: 189 DKTLIIITHRPSLLDL 204
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L D++L + G A +G GSGK ++++++ T G + +D T ++
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ-GSVRVDDTLITSTSKNKDIK 81
Query: 103 YVNHRTDLI----PSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALS-NVA 154
+ + L+ S E+T+ ++ GPQ VS+ A R+ LA + +S ++
Sbjct: 82 QIRKKVGLVFQFPESQLFEETVL--KDVAFGPQNFGVSQEEAEALAREKLALVGISESLF 139
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
+N EL+ + RRV I L +P +L+LDEPT LDP ++++ + V
Sbjct: 140 EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIV 199
Query: 215 LLT--MEKPRSDVLPFLDRTAYLCLGDLIYAG 244
L+T M+ DV + D L G L+ +G
Sbjct: 200 LVTHLMD----DVANYADFVYVLEKGKLVLSG 227
|
Length = 280 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 47/209 (22%), Positives = 80/209 (38%), Gaps = 46/209 (22%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDG---TPMSPQ-- 95
ILK ++L V+ GE+ A++G GSGK L + I+ S T G I+ G + P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 96 -------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
FQ + IP ++ + L A + R+AR + L L
Sbjct: 75 ARAGLFLAFQY--------PEEIPGVSNLEFLRSALNA---------RRSARGEEPLDLL 117
Query: 149 ALSNVARRNISELTPSE---HRRVVIG------------TQLVKDPVLLLLDEPTVNLDP 193
+ + ++ L E +R V G + +P L +LDE LD
Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDI 177
Query: 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222
+ ++ ++ + R+ L+ R
Sbjct: 178 DALKIVAEGINRL-REPDRSFLIITHYQR 205
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 55/220 (25%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
L+L+D+S + PGEV A++G GSGK ALLE G+++LDG P+S
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE----NFYQPQGGQVLLDGKPIS---- 79
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV---- 153
Q Y+ H + + E L+ +R +++ I L + V
Sbjct: 80 QYEHKYL-HSK--VSLVGQEPVLF-----------ARSLQD-NIAYGLQSCSFECVKEAA 124
Query: 154 ----ARRNISE---------------LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
A ISE L+ + +RV I L+++P +L+LDE T LD
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 195 STYLIVSMLSSYAKRKSRAV----LLTMEKPRSDVLPFLD 230
S + L + +R++ V L T+E R+D + LD
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVE--RADQILVLD 222
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 53/226 (23%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS----GTTRGEIILD-----GTPMSPQ 95
D++L + P V A +G G GK +L ++R GE++LD G + P
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ T G V R + P++++ + A L + ++ + + + L L N +
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK 139
Query: 156 RNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ L+ + +R+ I + +P +LL+DEP LDP+ST L + L + K+
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPIST-LAIEDLINELKQDY 198
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCL------GDLIYAGPTRLMLE 251
V++T ++ + D+TA+ L G L+ T +
Sbjct: 199 TIVIVTHNMQQAARVS--DQTAFFNLEATGKPGRLVEIDDTEKIFS 242
|
Length = 258 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
L DIS + R G+V A++G G+GK LL+++S G I++DG M F +T
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDA-GSILIDGQEMR---FASTTA 75
Query: 103 YVNH-------RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ L+P +TV + LY G V+R + N R+ L L +
Sbjct: 76 ALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD 135
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191
+ L+ + + V I L ++ ++ DEPT +L
Sbjct: 136 TPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSL 171
|
Length = 501 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 8e-09
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------- 94
+LK +SL+ G+V++++GS GSGK L I+ + G I+++G ++
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQ 78
Query: 95 ---------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
+L +T V +L +TV + + A +G +S+ R + L
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKQEARERAVKYL 136
Query: 146 ADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A + + A+ + L+ + +RV I L +P +LL DEPT LDP ++ ++
Sbjct: 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQ 196
Query: 205 SYAKRKSRAVLLTME 219
A+ V++T E
Sbjct: 197 QLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-09
Identities = 43/176 (24%), Positives = 76/176 (43%), Gaps = 7/176 (3%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+ + V GE L V G G+GK LL V++ G+I +DG +
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFM 84
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
Y+ H L L+ + L++ L G + + +A LA + L+ + +L
Sbjct: 85 AYLGHLPGLKADLSTLENLHFLCGLH-GRRAKQMPGSA-----LAIVGLAGYEDTLVRQL 138
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
+ + +R+ + + L LLDEP NLD L+ M+S++ + A++ T
Sbjct: 139 SAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTT 194
|
Length = 214 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 33 VFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG 89
+ G Q +L ++SL ++ GE +A+LG G GK L +R G ++G + G
Sbjct: 18 LSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTL----ARLLVGLESPSQGNVSWRG 73
Query: 90 TPMSP-------------QL-FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
P++ Q+ FQ + VN R + + + L HL + +
Sbjct: 74 EPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPL---RHLL---SLDKA 125
Query: 136 VRNARIRQVL--ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R AR ++L DL S + +R +L+ + +RV + L +P LL+LDE NLD
Sbjct: 126 ERLARASEMLRAVDLDDSVLDKRP-PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 59/240 (24%), Positives = 95/240 (39%), Gaps = 42/240 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT--- 99
L ISL + PGE +A++G GSGK L+ +I R G+I+LDG ++ +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRR 406
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--- 156
V+ L T+ + Y Q R A I + LA + +
Sbjct: 407 QVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPL 457
Query: 157 --------NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
N L+ + +R+ I L+KD +L+LDE T LD S L+ + L +
Sbjct: 458 GLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ 517
Query: 209 RKSRAV----LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE------YFRSIGF 258
++ V L T+EK DR + G ++ G +L ++ F
Sbjct: 518 GRTTLVIAHRLSTIEKA--------DRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQF 569
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 22/178 (12%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT- 90
+ FG + +L ++ V GE +A++G GSGK +L ++ G+I ++G
Sbjct: 8 KRFGILT---VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQ 63
Query: 91 ---------PMSP------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
P+ P + + G V +L P TV + A L +G ++R
Sbjct: 64 LYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG--MARA 121
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R ++L + L++ A ++L+ + +RV I L P ++L DE T LDP
Sbjct: 122 EAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDP 179
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 11/162 (6%)
Query: 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMS 93
T ++L D+SL++ G + +++G G+GK LL ++SR + GEI +DG T
Sbjct: 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDS-GEITIDGLELTSTP 69
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAH-LSIGPQVSRYVRNAR--IRQVLADLAL 150
+ + + LTV + + S G R + R I + + L L
Sbjct: 70 SKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQG----RLTKEDRRIINEAIEYLHL 125
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+++ R + EL+ + +R I L +D +LLDEP NLD
Sbjct: 126 EDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167
|
Length = 252 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 41/192 (21%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
+LKD+S + G+ +A++G GSGK +L ++ R + G I++DG +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLR 74
Query: 94 ------PQ---LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
PQ LF T GY N R P T E+ + AA + A+I
Sbjct: 75 RAIGVVPQDTVLFNDTIGY-NIRYGR-PDATDEE-VIEAA------------KAAQIHDK 119
Query: 145 LADLALSN-----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ + + V R + +L+ E +RV I ++K+P +LLLDE T LD + I
Sbjct: 120 I--MRFPDGYDTIVGERGL-KLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREI 176
Query: 200 VSMLSSYAKRKS 211
+ L +K ++
Sbjct: 177 QAALRDVSKGRT 188
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSPQ 95
ILK ++L ++ GEV A++G GSGK L + I T GEI+ G T + P+
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-08
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 27/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEI------ILDGTPM 92
+ DIS+++ V A++G G GK L I+R + S + GEI ILD
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 93 SPQLFQTTCGYVNHRTDLIPSL---TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
L + G V + + P + L YA + + V + + + L A
Sbjct: 97 VVNL-RREIGMVFQKPNPFPKSIYNNITHALKYAG------ERRKSVLDEIVEESLTKAA 149
Query: 150 LSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + + + L+ + +R+ I L P +LLLDEP LDP+S I +++
Sbjct: 150 LWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE 209
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
K + +++T ++ L DRTA+ GDL+ T
Sbjct: 210 L-KEEYSIIIVTHNMQQA--LRVSDRTAFFLNGDLVEYDQT 247
|
Length = 268 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 3e-08
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 29/217 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-----S 93
LK+I+L++ EV A++G G GK ++ ++R S T G+I+ + S
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ +T G V + + P + Y GP++ +++ + + + +L
Sbjct: 100 VEELRTNVGMVFQKPNPFPKSIYDNVTY-------GPKIHG-IKDKKTLDEIVEKSLRGA 151
Query: 154 A---------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
A N L+ + +R+ I L +P ++L+DEPT LDP+ST + ++
Sbjct: 152 AIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241
K+ +++T ++ + D+TA+ G +
Sbjct: 212 EL-KKDYSIIIVTHNMQQAARIS--DKTAFFLNGYVN 245
|
Length = 271 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G IQ L ++SL + GE++ ++G+ G+GK LL + T G I+ DG ++
Sbjct: 15 YGKIQA---LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDIT 70
Query: 94 ----PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
++ + V + +TVE+ L + Q R + ++ L
Sbjct: 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE--RIKWVYELFPRLH 128
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194
+ R ++ E + + IG L+ P LLLLDEP++ L P+
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
|
Length = 237 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 64/193 (33%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L + L + E + ++G G+GK L+++++ GE++LD
Sbjct: 18 LLDNAELHIEDNERVCLVGRNGAGKSTLMKILN--------GEVLLDD------------ 57
Query: 102 GYVNHRTDLI-------PSLTVEQTLY---------YAAHLSIGPQVSRYV------RN- 138
G + + DLI P VE T+Y A +L +S V +N
Sbjct: 58 GRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNL 117
Query: 139 -------------------ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDP 179
RI +VLA L L +S L+ R+ +G LV +P
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNP 175
Query: 180 VLLLLDEPTVNLD 192
+LLLDEPT +LD
Sbjct: 176 DVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 4e-08
Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 22/218 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS---SGTT-RGEIILDGTPMSPQL-- 96
LK I+L + +V A++G G GK LL ++R + G G++ +DG + +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 97 --FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+ G V + + P E Y I + V + + + L AL +
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIK---DKKVLDEVVERSLRGAALWDEV 135
Query: 155 RRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ + L+ + +R+ I + +P ++L+DEPT LDP++T+ I ++ K+
Sbjct: 136 KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKN 194
Query: 211 SRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
V++T M++ R DRTA+ +G+L+ T
Sbjct: 195 YTIVIVTHSMQQARR----ISDRTAFFLMGELVEHDDT 228
|
Length = 249 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 5e-08
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 25/164 (15%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQT 99
L ++SL +RPGE +A++G GSGK LL+++ T G ++LDG + P +
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRR 539
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-- 157
GYV L T+ + A Y + I + ++ RR+
Sbjct: 540 NIGYVPQDPRLF-YGTLRDNIALGA---------PYADDEEILRAAELAGVTEFVRRHPD 589
Query: 158 -----ISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
I E L+ + + V + L++DP +LLLDEPT +D
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 7e-08
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGT 90
FG ++ L +SL VR GEV A+LG G+GK L++++ SG GEI++DG
Sbjct: 10 FGGVK---ALDGVSLSVRRGEVHALLGENGAGKSTLMKIL----SGLYKPDSGEILVDGK 62
Query: 91 PMSP 94
+S
Sbjct: 63 EVSF 66
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSPQLFQT 99
L +I+ +AV+G G+GK L R +G T G +++ G P++ + +
Sbjct: 20 LNNINFIAPRNSRIAVIGPNGAGKSTLF----RHFNGILKPTSGSVLIRGEPITKENIRE 75
Query: 100 TCGYV----NHRTDLIPSLTVEQTLYYA-AHLSIGPQVSRYVRNARIRQVLADLALSNVA 154
+V + D I S TVEQ + + +L + + + R+ L L L +
Sbjct: 76 VRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH----RVSSALHMLGLEELR 131
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214
R L+ E +RV I + +P +L+LDEPT LDP ++ L+ + V
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191
Query: 215 LLT 217
+ +
Sbjct: 192 IFS 194
|
Length = 277 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 9e-08
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 30/178 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--RSSGTTRGEIILDG---TPMSPQ-- 95
L ++SL + GE+ V+G+ G+GK L+ I+ R + G +++DG T +S +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTS---GRVLVDGQDLTALSEKEL 77
Query: 96 ---------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+FQ H +L+ S TV + L+ + AR+ ++L
Sbjct: 78 RKARRQIGMIFQ-------H-FNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLE 126
Query: 147 DLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ LS+ A R ++L+ + +RV I L +P +LL DE T LDP +T I+ +L
Sbjct: 127 LVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
|
Length = 343 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 34/226 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQ 98
L+ IS ++ GE LA++G GSGK L +I T G + LDG + + F
Sbjct: 333 TLRGISFSLQAGEALAIIGPSGSGKSTLARLIV-GIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
GY+ +L P ++ ++R+ NA +++ L+ V +
Sbjct: 392 KHIGYLPQDVELFPG-------------TVAENIARFGENADPEKIIEAAKLAGVHELIL 438
Query: 159 --------------SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ L+ + +R+ + L DP L++LDEP NLD + + +
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+ R V++T R +L +D+ L G + G +L
Sbjct: 499 ALKARGITVVVITH---RPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 17/219 (7%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPM 92
N TAL +D S V G + A++G GSGK L + + G R G+I + G P
Sbjct: 18 NGHTAL--RDASFTVPGGSIAALVGVNGSGKSTLFKALM----GFVRLASGKISILGQPT 71
Query: 93 SPQLFQTTCGYVNHRTDL---IPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADL 148
L + YV ++ P L VE + + +G + ++ + LA +
Sbjct: 72 RQALQKNLVAYVPQSEEVDWSFPVL-VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV 130
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ R I EL+ + +RV + + + ++LLDEP +D + I+S+L +
Sbjct: 131 DMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-R 189
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + +L++ S V F D T + G ++ +GPT
Sbjct: 190 DEGKTMLVSTHNLGS-VTEFCDYTV-MVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 54/230 (23%), Positives = 111/230 (48%), Gaps = 27/230 (11%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS---SGTT-RGEIILDGT--- 90
+T +L D++L+++ +V A +G G GK L +++ + GT+ GEI GT
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152
Query: 91 --PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS----RYVRNARIRQV 144
+S +T G V + P+ E +++ +++ GP+ + R + + +
Sbjct: 153 SKKISSLELRTRIGMVFQK----PT-PFEMSIF--DNVAYGPRNNGINDRKILEKIVEKS 205
Query: 145 LADLALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200
L AL + + ++ + L+ + +R+ I + +P +LL+DEPT LDP++T I
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265
Query: 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
++ K+K +++T ++ + D T + G + AG T+ +
Sbjct: 266 ELILEL-KKKYSIIIVTHSMAQAQRIS--DETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 37/193 (19%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
+LK ++ + PGEV+A++G GSGK ALL+ T G+++LDG P+ Q
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ----NLYQPTGGQVLLDGVPLV----Q 547
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
Y+ HR + + E L+ S+ ++ + + +++A +N A I
Sbjct: 548 YDHHYL-HRQ--VALVGQEPVLFSG---SVRENIAYGLTDTPDEEIMAAAKAAN-AHDFI 600
Query: 159 SELTPSEH---------------RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
E +R+ I LV+ P +L+LDE T LD L L
Sbjct: 601 MEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL----L 656
Query: 204 SSYAKRKSRAVLL 216
R SR VLL
Sbjct: 657 QESRSRASRTVLL 669
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 25/181 (13%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SP 94
+L+D+SLE+ PGE +A++G GSGK LL+++ G I+LDG +
Sbjct: 484 DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ-GRILLDGVDLNDIDL 542
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAA---HLSIGPQVSRY---VRNARIRQVLADL 148
+ GYV + L+ + ++++G + + A++ +
Sbjct: 543 ASLRRQVGYV----------LQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 149 -ALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L + E L+ + +R+ + L+ P +LLLDE T LDP + +I+ L
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 204 S 204
Sbjct: 653 L 653
|
Length = 709 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 53/218 (24%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT----RGEIILDGTPM----S 93
+L +S+ V +++G GSGK L ++R + + G+++L G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLY-YAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
F+ G + R + P ++ L AH + + R V AR+ +V A+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ L+ + + + + L +P +LLLDEPT LDP +T I + S A R +
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLT- 214
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
+++T ++ + DR A G L+ GPT +
Sbjct: 215 VIIVTHNLAQAARIS--DRAALFFDGRLVEEGPTEQLF 250
|
Length = 276 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 37/177 (20%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMSPQLFQTTCGY 103
++LEVR E+++++G G+GK + ++ + +G G I+L G + G
Sbjct: 24 VNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTG---GTILLRGQHIE--------GL 72
Query: 104 VNH--------RT----DLIPSLTVEQTLYYAAHLSIG----------PQVSRYVRNA-- 139
H RT L +TV + L A H + P R A
Sbjct: 73 PGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALD 132
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R L + L A R L + RR+ I +V P +L+LDEP L+P T
Sbjct: 133 RAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET 189
|
Length = 255 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 34/198 (17%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR-GEIILDGTPMSPQL-- 96
L D+++ + G +A++G GSGK LL+ ++ + +SGT GE ++ + +L
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 97 --------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVL 145
FQ + H+ E+T+ + GP VS + R+++
Sbjct: 83 LRKKVGIVFQ----FPEHQL-------FEETV--EKDICFGPMNFGVSEEDAKQKAREMI 129
Query: 146 ADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
+ L + R+ EL+ + RRV I L +P +L+LDEPT LDP ++ M
Sbjct: 130 ELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFY 189
Query: 205 SYAKRKSRAVLL---TME 219
K K +L +ME
Sbjct: 190 KLHKEKGLTTVLVTHSME 207
|
Length = 290 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 56/232 (24%), Positives = 95/232 (40%), Gaps = 42/232 (18%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDG-----TPMS 93
L D+ L++ V A +G G GK L ++R + G+I LDG +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN-ARIRQV----LADL 148
+ G V + + P E Y GP++ R+ A + ++ L
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAY-------GPRIHGLARSKAELDEIVETSLRKA 147
Query: 149 ALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY----LIV 200
L + + E L+ + +R+ I + P ++L+DEP LDP++T LI
Sbjct: 148 GLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 201 SMLSSYAKRKSRAVLLT--MEK-PRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249
+ +Y V++T M++ R RTA+ LG+L+ G T M
Sbjct: 208 ELRQNYT-----IVIVTHSMQQAARVS-----QRTAFFHLGNLVEVGDTEKM 249
|
Length = 267 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 20/202 (9%)
Query: 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL--FQTTCGYVNHR 107
VRPGE +LG G+GK ++++ ++ T G+ + G + + GY
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV----LADLALSNVARRNISELTP 163
+ LT + LY A L R V I +V + L LS A R +
Sbjct: 2021 DAIDDLLTGREHLYLYARL-------RGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSG 2073
Query: 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT---MEK 220
R++ L+ P L+LLDEPT +DP + ++ + + S R+ RAV+LT ME+
Sbjct: 2074 GNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSII-REGRAVVLTSHSMEE 2132
Query: 221 PRS--DVLPFLDRTAYLCLGDL 240
+ L + + A+ CLG +
Sbjct: 2133 CEALCTRLAIMVKGAFQCLGTI 2154
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 56/205 (27%), Positives = 79/205 (38%), Gaps = 36/205 (17%)
Query: 18 LQHPALVETGSCFQRVFGNIQ--TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS- 74
AL G + IL ++S +V PGE ++G G+GK LL +I+
Sbjct: 249 SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
Query: 75 ---------------RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR--TDLIPSLTVE 117
RR SG T +I + GYV+ D S +V
Sbjct: 309 DHPQGYSNDLTLFGRRRGSGETIWDI------------KKHIGYVSSSLHLDYRVSTSVR 356
Query: 118 QTLYYAAHLSIG--PQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQ 174
+ SIG VS + +Q L L + A L+ + R +I
Sbjct: 357 NVILSGFFDSIGIYQAVSDRQQ-KLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA 415
Query: 175 LVKDPVLLLLDEPTVNLDPLSTYLI 199
LVK P LL+LDEP LDPL+ L+
Sbjct: 416 LVKHPTLLILDEPLQGLDPLNRQLV 440
|
Length = 490 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 51/216 (23%), Positives = 80/216 (37%), Gaps = 35/216 (16%)
Query: 9 EEEYYLKIDLQHPALVETGSCFQR----VFGNIQTALILKDISLEVRPGEVLAVLGSKGS 64
+ E + P L F IL IS + G+ +A++G G+
Sbjct: 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGA 300
Query: 65 GKRALLEVISRRSSGTTRGEIILDGT--------------PMSPQ---LFQTTCGYVNHR 107
GK +L ++ R + G I +DG + PQ LF T Y
Sbjct: 301 GKSTILRLLFRFYDVNS-GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKY 359
Query: 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR 167
P T E+ A I + Q L + + V R + +L+ E +
Sbjct: 360 GR--PDATAEEVGAAAEAAQIHDFI----------QSLPEGYDTGVGERGL-KLSGGEKQ 406
Query: 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
RV I ++K+P +L+LDE T LD + I + L
Sbjct: 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
|
Length = 497 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-07
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDGTPMSPQLFQTT 100
L+ ++ +RPGE+ + G G+GK LL++I R S G+I G ++ +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSA---GKIWFSGHDIT-RLKNRE 73
Query: 101 CGYVNHRTDLI---PSLTVEQTLY--YAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
++ + +I L +++T+Y A L I +R R+ L + L + A+
Sbjct: 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRR-RVSAALDKVGLLDKAK 132
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+L+ E +RV I +V P +LL DEPT NLD
Sbjct: 133 NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 36/172 (20%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGT----TRGEIILDGTPMSPQ-- 95
D+S ++ PGEVL ++G GSGK LL +S R +G R + D +S
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83
Query: 96 --LFQTTCGYV--NHRTDLIPSLT----VEQTLYYAAHLSIGPQVSRYVRN-ARIRQVLA 146
L +T G+V + R L ++ + + L +++G R+ IR
Sbjct: 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERL-----MAVG------ARHYGDIRATAG 132
Query: 147 D-LALSNVARRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLD 192
D L + I +L P+ +R+ I LV P L+ +DEPT LD
Sbjct: 133 DWLERVEIDAARIDDL-PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 32/169 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+LK I + GEV A+LG G+GK L+++I+ + G + + G P ++P
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDS-GTLEIGGNPCARLTPAKAH 84
Query: 99 TTCGY-VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--------- 148
Y V L P+L+V++ + + L + +++Q+LA L
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILFG--LPKRQASMQ-----KMKQLLAALGCQLDLDSS 137
Query: 149 -ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
VA R I E I L++D +L+LDEPT +L P T
Sbjct: 138 AGSLEVADRQIVE----------ILRGLMRDSRILILDEPTASLTPAET 176
|
Length = 510 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-07
Identities = 41/177 (23%), Positives = 61/177 (34%), Gaps = 67/177 (37%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+LKDISL + PG+ + ++G G+GK LL++I+ G + T
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDE-GIVTWGST---------- 62
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
+ Y LS G
Sbjct: 63 -----------------VKIGYFEQLSGG------------------------------- 74
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLT 217
E R+ + L+++P LLLLDEPT +LD S + L Y V+L
Sbjct: 75 ----EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILV 123
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 16/96 (16%)
Query: 2 VEITITGEEEYYLKIDLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGS 61
+ I E+ Y LK L+ + + LKDIS E+ GE + ++G
Sbjct: 11 KKFRIYHEKSYSLKKRLKG---------LAKGGRKVAEFWALKDISFEIYKGERVGIIGH 61
Query: 62 KGSGKRALLEVISRRSSGT---TRGEIILDGTPMSP 94
G+GK LL++I +G T G++ + G
Sbjct: 62 NGAGKSTLLKLI----AGIYKPTSGKVKVTGKVAPL 93
|
Length = 249 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 31/201 (15%)
Query: 19 QHPALVET-GSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77
LV+ G F R GN I +ISL V G++ A++G G GK LL +I +
Sbjct: 3 SVANLVDMRGVSFTR--GN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI 57
Query: 78 SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD-------LIPSLTVEQTLYYA--AHLSI 128
+ GEI+ DG + P + ++ V R L + V + Y H +
Sbjct: 58 A-PDHGEILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL 115
Query: 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-----HRRVVIGTQLVKDPVLLL 183
+ V+ + L V R ++L PSE RR + + +P L++
Sbjct: 116 PAPLLHST-------VM--MKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166
Query: 184 LDEPTVNLDPLSTYLIVSMLS 204
DEP V DP++ ++V ++S
Sbjct: 167 FDEPFVGQDPITMGVLVKLIS 187
|
Length = 269 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ 95
++ + L +S EVR GE+L ++G G+GK LL ++ +SG+ G I G P+
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS--GSIQFAGQPLEA- 64
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
+ HR L T + +L++ R + V LAL +
Sbjct: 65 --WSATELARHRAYLSQQQTPPFAMPVWHYLTL--HQPDKTRTELLNDVAGALALDDKLG 120
Query: 156 RNISELTPSEHRRV-------VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
R+ ++L+ E +RV I LLLLDEP +LD + +LS+
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC- 179
Query: 209 RKSRAVLLT 217
++ A++++
Sbjct: 180 QQGLAIVMS 188
|
Length = 248 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 34/210 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQT 99
++D+S ++ GE+L + G G+ + ++E I +S+GT I L G ++
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGT----ITLHGKKINNH---N 316
Query: 100 TCGYVNHRTDLIPSLTVE--QTLYYAAHLSIG-----PQVSRY------VRNARIRQ--- 143
+NH L+ T E T YA +L IG + Y + N+R++
Sbjct: 317 ANEAINHGFALV---TEERRSTGIYA-YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQ 372
Query: 144 -VLADLALSNVARR-NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
V+ + + R I L+ ++V+IG L+ P +L+LDEPT +D + + I
Sbjct: 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432
Query: 202 MLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231
+++ AK+ ++++ E P ++L DR
Sbjct: 433 LIAELAKKDKGIIIISSEMP--ELLGITDR 460
|
Length = 491 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 21/197 (10%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L++++LE++PG+V+AV+G G+GK LL +I G RGE ++
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKG--RGEEKYRPDSGKVEV----- 450
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR-QVLADLALSNVA--RRNI 158
N + LIP E ++I + + ++L LS+ RR
Sbjct: 451 -PKNTVSALIPG-EYEPEF---GEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKF 505
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218
SEL+ + R + L + P +LL+DE +LD L+ + +S A+ +++
Sbjct: 506 SELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVT 565
Query: 219 EKP------RSDVLPFL 229
+P R D L +
Sbjct: 566 HRPEVGNALRPDTLILV 582
|
Length = 593 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG-- 89
G Q ++K I L+V GE + ++G G GK LL +++ G T GEI + G
Sbjct: 15 GKTQ---VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVA----GLERITSGEIWIGGRV 67
Query: 90 -TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI-GPQVSRYVRNARI 141
+ P +FQ Y L P ++V + + Y L I G + + R+
Sbjct: 68 VNELEPADRDIAMVFQN---YA-----LYPHMSVRENMAYG--LKIRG--MPKAEIEERV 115
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ L L + R EL+ + +RV +G +V++P + L DEP NLD
Sbjct: 116 AEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 36/196 (18%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP 94
LK++S E+ GE +A+LG GSGK IS+ +G GEI +DG +S
Sbjct: 20 SENNALKNVSFEINEGEYVAILGHNGSGK----STISKILTGLLKPQSGEIKIDGITISK 75
Query: 95 Q-----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ +FQ N I + TVE ++ G + + +++
Sbjct: 76 ENLKEIRKKIGIIFQ------NPDNQFIGA-TVE------DDIAFGLENKKVPPK-KMKD 121
Query: 144 VLADLA----LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
++ DLA + + + L+ + +RV I + L +P +++ DE T LDP I
Sbjct: 122 IIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 200 VSMLSSYAKRKSRAVL 215
++ K + + ++
Sbjct: 182 KKIMVDLRKTRKKTLI 197
|
Length = 271 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 8e-07
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 46 ISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTR---GEIILDGTPMSPQL--- 96
+SLEV+ GE+ ++G+ G+GK L ++I+ +SG G+ +D T P
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGR 362
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
+ G ++ DL P TV L A L + +++R A I L +
Sbjct: 363 AKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR--MKAVI--TLKMVGFDEEKAE 418
Query: 157 NI-----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS---------------- 195
I EL+ E RV + L+K+P +++LDEPT +DP++
Sbjct: 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 196 -TYLIVS 201
T++IVS
Sbjct: 479 QTFIIVS 485
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
+ D++ E G+ A++G GSGK L++ I+ TT G + +D ++ +
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTT-GTVTVDDITITHKTKDKYIR 81
Query: 103 YVNHRTDLIPSL--------TVEQTLYYAAHLSIGPQ-VSRYVRNARIR--QVLADLALS 151
V R ++ TVE+ + + GP+ + + ++L DL S
Sbjct: 82 PVRKRIGMVFQFPESQLFEDTVEREIIF------GPKNFKMNLDEVKNYAHRLLMDLGFS 135
Query: 152 NVARRNISELTP-----SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
R++ +P + R++ I + L +P +++LDEPT LDP S ++ +L S
Sbjct: 136 ----RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+++ ++L ++V + D + G ++ +
Sbjct: 192 QTDENKTIILVSHD-MNEVARYADEVIVMKEGSIVSQTSPK 231
|
Length = 286 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP 94
LKD+S EV GE + ++G G+GK LL +++ G + + G S
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSL 88
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 18/209 (8%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQTT 100
D+S +R GE+L V G G+G+ L++ + G G + ++G P+ Q +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 101 CGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
V R ++P L V + + + S + +A + A+ + +
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSF---CFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 158 ------ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
I L+ ++ V+ L+ +P +L+LDEPT +D + Y I +++ A+
Sbjct: 395 ASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGV 454
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240
++++ E +VL DR + G L
Sbjct: 455 AIIVVSSELA--EVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 7/157 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
+LKDI+ ++PGE +A++G G+GK L+ ++ R +G+I++DG +S + +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQKGQILIDGIDIRDISRKSLR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA--LSNVARR 156
+ G V T L T+ + + + +V + A + L V
Sbjct: 77 SMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGE 135
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
N L+ E + + I +++DP +L+LDE T N+D
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 42/177 (23%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---T 90
FG+ ++ +++L ++ G ++ +LG G GK +L +++ T G+I +DG T
Sbjct: 16 FGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVT 71
Query: 91 PMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV---------SRY 135
S Q +FQ+ Y L P H+S+G V +
Sbjct: 72 HRSIQQRDICMVFQS---YA-----LFP------------HMSLGENVGYGLKMLGVPKE 111
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R R+++ L + L+ R + +++ + +RV + L+ P +LL DEP NLD
Sbjct: 112 ERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 22/166 (13%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGT----TRGEIILDGTPMSP-- 94
+D+S ++ PGEVL ++G GSGK LL ++ R GT R L+ +S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 95 --QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD-LALS 151
+L +T G+V+ P + + A++ IR D L
Sbjct: 80 RRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEV 135
Query: 152 NVARRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ I +L P +R+ I LV P L+ +DEPT LD
Sbjct: 136 EIDPTRIDDL-PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD 180
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 26/221 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDG-----TPMS 93
LK++S+++ V A++G G GK + ++R + + G++ ++G +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV---SRYVRNARIRQVLADLAL 150
+ G V + + P + Y GP++ ++ + + L AL
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAY-------GPRIHGANKKDLDGVVENALRSAAL 140
Query: 151 ----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206
S+ + L+ + +R+ I L P ++L DEPT LDP+ST I ++ +
Sbjct: 141 WDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 207 AKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
K+ V++T ++ + D T + +G+LI G TR
Sbjct: 201 -KKDYTIVIVTHNMQQAARIS--DYTGFFLMGELIEFGQTR 238
|
Length = 258 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 39/170 (22%)
Query: 43 LKDISLEVR---PGE-VLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSPQ 95
L D+ L V P + + A+ G G+GK +L+ IS G TR G I+L+G
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAIS----GLTRPQKGRIVLNGR----V 61
Query: 96 LF---QTTC--------GYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
LF + C GYV + R L P V L Y A+
Sbjct: 62 LFDAEKGICLPPEKRRIGYVFQDAR--LFPHYKVRGNLRYGM---------AKSMVAQFD 110
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+++A L + + R L+ E +RV IG L+ P LLL+DEP +LD
Sbjct: 111 KIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 18/171 (10%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKR----ALLEVISRRSSGTTRGEIILDGTPMS 93
++ D+SL++ GE LA++G GSGK ++L ++ G+I G +
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLL 79
Query: 94 PQLFQTTCGYVNHRTDLI---------PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
QT G ++ +I P T+E+ LY LS+ + R I
Sbjct: 80 HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEV--LSLHRGMRREAARGEILNC 137
Query: 145 LADLALSNVARRNIS---ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + + A+R +L+ E +RV+I L+ P LL+ DEPT LD
Sbjct: 138 LDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188
|
Length = 529 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 53/172 (30%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRR---SSGT----TRGEIILDGTPMSP-- 94
+D+S ++ PGEVL ++G GSGK LL+ IS R +GT R D MS
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 95 --QLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQV----SRYVRNAR------ 140
+L +T G+V N R L ++ A +IG ++ +R+ N R
Sbjct: 83 RRRLLRTEWGFVHQNPRDGLRMQVS--------AGGNIGERLMAIGARHYGNIRAEAQDW 134
Query: 141 IRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ +V DL + R S +R+ I LV P L+ +DEPT LD
Sbjct: 135 LEEVEIDLDRIDDLPRTFSG---GMQQRLQIARNLVTRPRLVFMDEPTGGLD 183
|
Length = 258 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 9/176 (5%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLF 97
+LKDIS + PGE +A++G GSGK L++++ R T GEI++DG +S
Sbjct: 343 PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSL 401
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL---SNVA 154
+ G V+ L S T+ + + + ++ ++ A + +A+L + V
Sbjct: 402 RKRIGIVSQDPLLF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG 460
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
R ++ L+ + +R+ I L+++P +L+LDE T LD + LI L K +
Sbjct: 461 ERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGR 515
|
Length = 567 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQL- 96
L L D++LEV+ GE L +LG GSGK I++ + + G++ +DG S +
Sbjct: 24 LALDDVNLEVKKGEFLVILGRNGSGK----STIAKHMNALLIPSEGKVYVDGLDTSDEEN 79
Query: 97 ---FQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
+ G V N ++ ++ E + +L I P+ R R+ + L + +
Sbjct: 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIR----ERVDESLKKVGMY 135
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R L+ + +RV I L P ++ DEPT LDP
Sbjct: 136 EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDP 177
|
Length = 280 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 5e-06
Identities = 48/218 (22%), Positives = 91/218 (41%), Gaps = 19/218 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGT-----PM 92
ILK+++L++ V A++G G GK + ++R G I LDG +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ G V + + P + Y L I + R+ + L AL +
Sbjct: 78 DVVELRKKVGMVFQKPNPFPKSIFDNVAY---GLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 153 VARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
+ + + L+ + +R+ I + P ++L+DEP LDP+ST I ++ K
Sbjct: 135 EVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-K 193
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
V++T ++ + T++ G++I +G T
Sbjct: 194 EDYTIVIVTHNMQQATRVS--KYTSFFLNGEIIESGLT 229
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 25/188 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG------TTRGEIILDGTPMSPQ 95
L DIS + G A++G GSGK IS+ +G +I +DG
Sbjct: 22 ALNDISFSIPRGSWTALIGHNGSGK----STISKLINGLLLPDDNPNSKITVDGI----T 73
Query: 96 LFQTTCGYVNHRTDLI---PS-----LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
L T + + ++ P TV + + V R +R VLAD
Sbjct: 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLE---NRAVPRPEMIKIVRDVLAD 130
Query: 148 LALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207
+ + + + L+ + +RV I L +P +++LDE T LDP I+ ++
Sbjct: 131 VGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190
Query: 208 KRKSRAVL 215
K+ + V+
Sbjct: 191 KKNNLTVI 198
|
Length = 282 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 9e-06
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
G +T+ LKDI+LEV GE++A++G GSGK +LL +
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL 51
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-06
Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 49/187 (26%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTRGEIILDGTPMSPQLFQ 98
ILKDISL PG + VLG G+GK LL + + + +G R +P +
Sbjct: 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEAR---------PAPGI-- 68
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY------------------VRNAR 140
GY+ L P+ TV + + I + R+ A
Sbjct: 69 -KVGYLPQEPQLDPTKTVRENVEEGVA-EIKDALDRFNEISAKFAEPDADMDALLAEQAE 126
Query: 141 IRQVLADLALSNVARR---------------NISELTPSEHRRVVIGTQLVKDPVLLLLD 185
+++++ ++ R+ ++++L+ E RRV + L+ P +LLLD
Sbjct: 127 LQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLD 186
Query: 186 EPTVNLD 192
EPT +LD
Sbjct: 187 EPTNHLD 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 16/210 (7%)
Query: 54 EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL--FQTTCGYVNHRTDLI 111
++ A LG G+GK L +++ T+ G +++ G + L + + G L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTS-GTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015
Query: 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ--VLADLALSNVARRNISELTPSEHRRV 169
LTV + + + A L R A++ +L D L + +L+ R++
Sbjct: 1016 HHLTVAEHILFYAQLK-----GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKL 1070
Query: 170 VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL-TMEKPRSDVLPF 228
+ V D +++LDEPT +DP S I +L Y R R +++ T +D+L
Sbjct: 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY--RSGRTIIMSTHHMDEADLLG- 1127
Query: 229 LDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258
DR A + G L Y T L L+ GF
Sbjct: 1128 -DRIAIISQGRL-YCSGTPLFLKNCFGTGF 1155
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 13/177 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+ +++++E+ G A++G G GK LL +SR + G + LDG +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGE----HIQHYAS 76
Query: 102 GYVNHRTDLI------PSLTVEQTLYYAAHLSIGPQVSRYVRN--ARIRQVLADLALSNV 153
V R L+ P Q L P +R+ + + + + ++++
Sbjct: 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL 136
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
A +++ L+ + +R I L ++ ++LLDEPT LD ++ +LS + K
Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK 193
|
Length = 265 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 41/177 (23%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPM- 92
Q ILK IS ++ GE L ++G GSGK R L+ + T G + LDG +
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-----PTSGSVRLDGADLR 401
Query: 93 --SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA---- 146
+ GY+ +L +I ++R+ A +V+
Sbjct: 402 QWDREQLGRHIGYLPQDVELFDG-------------TIAENIARFGEEADPEKVIEAARL 448
Query: 147 ----DLAL-------SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+L L + + + L+ + +R+ + L DP L++LDEP NLD
Sbjct: 449 AGVHELILRLPQGYDTRIGEGGAT-LSGGQRQRIALARALYGDPFLVVLDEPNSNLD 504
|
Length = 580 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 20/181 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLFQ 98
L +I++++ + A++G G GK L ++R + G +I +G + F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR-----IRQVLADLALSNV 153
+ + ++ + ++S GP++ ++ + + Q L AL N
Sbjct: 83 IL--ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHG-TKDKKKLDEIVEQSLKKSALWNE 139
Query: 154 AR----RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST----YLIVSMLSS 205
+ N L+ + +R+ I L +P ++L+DEPT LDP+ST LI+++ S
Sbjct: 140 VKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKES 199
Query: 206 Y 206
Y
Sbjct: 200 Y 200
|
Length = 254 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 43/174 (24%), Positives = 72/174 (41%), Gaps = 36/174 (20%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKR-------ALLEVISRRSSGTTRGEIILDGT 90
Q L D+S V+ GE L+++G GSGK LLE S G+II+DG
Sbjct: 18 QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAES--------GQIIIDGD 69
Query: 91 PMSPQ-----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
++ + +FQ N + + TVE + + +
Sbjct: 70 LLTEENVWDIRHKIGMVFQ------NPDNQFVGA-TVEDDVAFGLE---NKGIPHEEMKE 119
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
R+ + L + + + R + L+ + +RV I + P +++LDE T LDP
Sbjct: 120 RVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
|
Length = 279 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 2e-05
Identities = 40/191 (20%), Positives = 85/191 (44%), Gaps = 16/191 (8%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-------- 90
T IL+ +S+E+ +V A++G G GK L+ ++R + E+ ++G
Sbjct: 19 TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE--LESEVRVEGRVEFFNQNI 76
Query: 91 ---PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS--RYVRNARIRQVL 145
++ + V+ + +L P + Y + P++ V +A L
Sbjct: 77 YERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL 136
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
D + + ++ +L+ + +R+ I L P +LL+DEP LDP+++ + S++ S
Sbjct: 137 WD-EIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195
Query: 206 YAKRKSRAVLL 216
R +++
Sbjct: 196 LRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 43 LKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
D LEV G EV+ +LG G GK +++++ E L PQ
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLK-VSYKPQ-- 408
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
Y++ D TVE L A + G S Y + +++ L L ++ R
Sbjct: 409 -----YISPDYDG----TVEDLLRSAIRSAFG---SSYFKT----EIVKPLNLEDLLERP 452
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ EL+ E +RV I L ++ L LLDEP+ LD
Sbjct: 453 VDELSGGELQRVAIAAALSREADLYLLDEPSAYLD 487
|
Length = 591 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGT-----PMS 93
L D+S+++ +V A++G G GK L I+R + + GE+ G +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN--ARIRQVLADLALS 151
P + G V + + P + Y G ++ Y + R+ + L AL
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAY-------GLKIQGYDGDIDERVEESLRRAALW 167
Query: 152 NVARRNIS----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
+ + + +L+ + +R+ I + DP ++L+DEP LDP++T
Sbjct: 168 DEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVAT 216
|
Length = 285 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 35/186 (18%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQ 95
+ +L +++L+++PGE + ++G GSGK L +++ R + G++++DG ++ P
Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPA 527
Query: 96 LFQTTCGYVNHRTDLI------------PSLTVEQTLYYA----AHLSIGPQVSRYVRNA 139
+ G V L P E ++ A AH I Y
Sbjct: 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEV 587
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ L+ + +R+ I LV +P +L+ DE T LD S LI
Sbjct: 588 GEKGAN---------------LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALI 632
Query: 200 VSMLSS 205
+ +
Sbjct: 633 MRNMRE 638
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+LK+IS ++PGE + ++G GSGK +LL + R + G I++DG +S
Sbjct: 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDIS 69
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 38/162 (23%)
Query: 43 LKDISLEV-----RPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMS 93
L D SLEV GEV+ ++G G GK + L V+ GE+ + +S
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-----PDEGEVDPELK-IS 403
Query: 94 --PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV-SRYVRNARIRQVLADLAL 150
PQ Y+ + D TVE L SI + S Y ++ +++ L L
Sbjct: 404 YKPQ-------YI--KPD--YDGTVEDLLR-----SITDDLGSSYYKS----EIIKPLQL 443
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ +N+ +L+ E +RV I L +D L LLDEP+ +LD
Sbjct: 444 ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 43 LKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQ 95
L + +LEV G EV+ +LG G GK +++++ G+I ++ +S PQ
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELDTVSYKPQ 68
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
Y+ + TV L SI Y ++ L + +
Sbjct: 69 -------YIKADYEG----TVRDLLS-----SITKDF--YTHPYFKTEIAKPLQIEQILD 110
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R + EL+ E +RV I L KD + LLDEP+ LD
Sbjct: 111 REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP 94
LKD+S V GE +A++G GSGK L +++ +G G I + G +S
Sbjct: 18 AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL----NGLLLPEAGTITVGGMVLSE 73
Query: 95 Q-----------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ +FQ N + + TV+ + + +IG V R R+ Q
Sbjct: 74 ETVWDVRRQVGMVFQ------NPDNQFVGA-TVQDDVAFGLE-NIG--VPREEMVERVDQ 123
Query: 144 VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L + + + R L+ + +RV I L P +++LDE T LDP
Sbjct: 124 ALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
|
Length = 279 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 37/179 (20%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
F ++ + D+S E + G+ +A++G G+GK L+ ++ +R T G+I++DG ++
Sbjct: 342 FEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL-QRVYDPTVGQILIDGIDIN 400
Query: 94 -----------PQLFQTTCGYVNH---------RTDLIPSLTVEQTLYYAAHLSIGPQVS 133
+FQ G N R E AAH I + +
Sbjct: 401 TVTRESLRKSIATVFQDA-GLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSN 459
Query: 134 RYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
Y + V R + L+ E +R+ I ++K+ +L+LDE T LD
Sbjct: 460 GY--------------DTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALD 503
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL---LEVISRRSSGTTRGEIILDGTPMSPQLFQT 99
L++I+L ++ GE + ++G GSGK L L + R G I G Q +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 100 TCGYV--NHRTDLIPSLTVEQTLYYAA-HLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
G V N T + TVE+ L + +L + P R R+ + LA++ L R
Sbjct: 78 LVGIVFQNPETQFV-GRTVEEDLAFGPENLCLPPIEIR----KRVDRALAEIGLEKYRHR 132
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ L+ + + V + L +P L+ DE T LDP S
Sbjct: 133 SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
|
Length = 274 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
ELT E ++V+I L P LL+ DEPT +++P + I +LS + + +LL
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+ + + D+ L G + + P+ ++
Sbjct: 218 DLQM-ISQWADKINVLYCGQTVESAPSEELVT 248
|
Length = 330 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 52/212 (24%), Positives = 92/212 (43%), Gaps = 36/212 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SP-QLF 97
+ D+S +R GE+L + G G+G+ L++ + G GEI +DG P+ +P Q
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336
Query: 98 QTTCGYV---NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NV 153
V R ++P + V + + AA + R+ +RI D A
Sbjct: 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAA-------LDRFTGGSRI-----DDAAELKT 384
Query: 154 ARRNISEL---TPSEHRRV-----------VIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+I L T S + V+ L+ +P +L+LDEPT +D + Y I
Sbjct: 385 ILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231
+++ ++ ++++ E P +VL DR
Sbjct: 445 YKLINQLVQQGVAIIVISSELP--EVLGLSDR 474
|
Length = 506 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLE---VISRRSSGTTRGEIILDGTPMSPQLFQT 99
L +IS E+ G +A++G GSGK L++ + + SSGT I + G ++P+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT----ITIAGYHITPETGNK 78
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLS---IGPQ---VSRYVRNARIRQVLADLALS-N 152
+ + L+ E L+ L GP+ S + + L + LS +
Sbjct: 79 NLKKLRKKVSLVFQFP-EAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED 137
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ ++ EL+ + RRV I + +P +L LDEP LDP ++ + Y K
Sbjct: 138 LISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHT 197
Query: 213 AVLLT 217
+L+T
Sbjct: 198 VILVT 202
|
Length = 287 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 30/186 (16%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPMSPQ--- 95
+K ++ ++ V A++G G GK L I+R + S T G ++ DG + +
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 96 --LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP---------QVSRYVRNARIRQV 144
L + G V + + P + Y GP Q+ V + +
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAY-------GPRLHGINDKKQLEEIVEKSLRKAA 167
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY----LIV 200
L D +S+ +N L+ + +R+ + L +P +LLLDEPT LDP +T LI
Sbjct: 168 LWD-EVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQ 226
Query: 201 SMLSSY 206
+ SY
Sbjct: 227 ELRGSY 232
|
Length = 286 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 22/159 (13%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEV---ISRRSSGTTR---GEIILDGTPMSPQL 96
L +L V PG V+A++G G+GK +++V I R +G+ E+ +G P S Q
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG-PKSSQ- 77
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ-VSRYVR------NARIRQVLADLA 149
+ G ++ +LIP LT+ A ++ +G + V+R+ R A ++LA L
Sbjct: 78 -EAGIGIIHQELNLIPQLTI------AENIFLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188
L + + + EL+ E + V I L + ++++DEPT
Sbjct: 131 LRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPT 169
|
Length = 501 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 12/154 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L + L + G+ +AV+G G GK LL +++ + + GE++ P++ T
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLAEAREDTRL 85
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
+ + R L+P V ++G + R Q LA + L++ A + L
Sbjct: 86 MFQDAR--LLPWKKVID--------NVGLGLKGQWR-DAALQALAAVGLADRANEWPAAL 134
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
+ + +RV + L+ P LLLLDEP LD L+
Sbjct: 135 SGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
|
Length = 257 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 36/180 (20%)
Query: 34 FG-NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG 89
FG + ++++ SL ++PG+ +A++G GSGK I++ +G GEI+ DG
Sbjct: 485 FGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGK----STIAKLVAGLYQPWSGEILFDG 540
Query: 90 TP---MSPQLFQTTCGYVNHRTDLIPSLTVEQ--TLYYAAHLSIGPQVSRYVRNARIRQV 144
P + ++ + V+ L TV TL+ + +A + +
Sbjct: 541 IPREEIPREVLANSVAMVDQDIFLF-EGTVRDNLTLW-----------DPTIPDADLVRA 588
Query: 145 LADLALSNVARR-------NISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
D A+ +V ++E L+ + +R+ I LV++P +L+LDE T LDP
Sbjct: 589 CKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 22/179 (12%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---- 93
QT +K +S +R G+ LA++G GSGK L ++++ T+ GE+++D P+
Sbjct: 24 QTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTS-GELLIDDHPLHFGDY 82
Query: 94 -------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
+FQ + T L P + Q L + L + + R +I + L
Sbjct: 83 SYRSQRIRMIFQ------DPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLR 134
Query: 147 DLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD-PLSTYLIVSML 203
+ L + A L P + +R+ + L+ P +++ DE +LD + + LI ML
Sbjct: 135 QVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLML 193
|
Length = 267 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP 94
Q +LK ++L+ V ++G+ G GK L +S G R G ++ G P+
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLS----GLLRPQKGAVLWQGKPLD- 66
Query: 95 QLFQTTCGYVNHRTDLIPSLT-VEQTLYYAAHLSIGPQVSRYVRNARI------RQVLAD 147
+ G + R + EQ ++Y I ++ +RN + R+V
Sbjct: 67 ---YSKRGLLALRQQVATVFQDPEQQIFYT---DIDSDIAFSLRNLGVPEAEITRRVDEA 120
Query: 148 LALSNVAR---RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L + + I L+ + +RV I LV LLLDEPT LDP +++++
Sbjct: 121 LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180
Query: 205 SYAKRKSRAVL 215
+ + ++
Sbjct: 181 RIVAQGNHVII 191
|
Length = 271 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSSGTTRGEIILDG 89
IL+ ++LEVRPGEV A++G GSGK L ++ R T G + G
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
|
Length = 248 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 8/168 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
IL DISL ++ ++G GSGK L +++ + GEI+L+G + T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS-GEILLNGFSLKDIDRHTLR 547
Query: 102 GYVNH--RTDLIPSLTVEQTLYYAAHLSIGPQ-VSRYVRNARIRQVLADLAL---SNVAR 155
++N+ + I S ++ + L A ++ + A I+ + ++ L + ++
Sbjct: 548 QFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSE 607
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
S ++ + +R+ + L+ D +L+LDE T NLD ++ IV+ L
Sbjct: 608 EG-SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNL 654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 43/172 (25%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS---GTT-------RGEIILDGT 90
L L D+ L++ +++A +G G GK LL +R + G R I D
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR--IRQVLADL 148
S +L + G V R + P E +++ P+ + Y N + L
Sbjct: 94 INSVKL-RRQVGMVFQRPNPFPKSIYE-------NIAFAPRANGYKGNLDELVEDSLRRA 145
Query: 149 ALSNVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
A+ + + E L+ + +R+ I + P +LL+DEP LDP+ST
Sbjct: 146 AIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST 197
|
Length = 274 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQ 98
+L+D+S V G+ + +LG GSGK LL + R S T GEI +DG ++ Q ++
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWR 1291
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
G + + I S T + L S ++ + ++ V+ L V
Sbjct: 1292 KAFGVIPQKV-FIFSGTFRKNLDPYEQWS-DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD 1349
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
L+ + + + ++ +LLLDEP+ +LDP++ +I
Sbjct: 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQII 1392
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 4e-04
Identities = 39/186 (20%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILD-------GTPMS 93
++ IS+++ +V A++G G GK ++ ++R S G + E ++D ++
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
+ G V R + P E Y + I ++ + + + L AL
Sbjct: 83 INRLRRQIGMVFQRPNPFPMSIYENVAY---GVRISAKLPQADLDEIVESALKGAALWQE 139
Query: 154 ARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
+ +++ L+ + +R+ I L P +LL+DEP LDP++T + ++ S
Sbjct: 140 VKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSE 199
Query: 210 KSRAVL 215
+ A++
Sbjct: 200 LTIAIV 205
|
Length = 259 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALL 70
LIL D+SL++ PGE +A++G GSGK LL
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLL 496
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEI------ILD 88
++ ILK ++L + GE+ A++G GSGK L +VI+ + G+I ILD
Sbjct: 16 SVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILD 75
Query: 89 GTP 91
P
Sbjct: 76 LEP 78
|
Length = 252 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
R+ L+ + RRV I L P +L+ DEPT LDP + ++ ++ AK ++ V
Sbjct: 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVF 230
Query: 216 L---TMEKPRSDVLPFLDRTAYLCLGDLIYAG 244
+ TME VL D + G ++ G
Sbjct: 231 VITHTMEH----VLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 44/176 (25%), Positives = 66/176 (37%), Gaps = 46/176 (26%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRAL---LEVISRRSSGTTR--GEIILDGTPMSPQL- 96
L +S + G+ LAV+G G GK L L +I + G G+ +L P + +L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 97 -------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA 149
FQ G +N P V Q L L I +S R + ++A +
Sbjct: 91 RQKIQIVFQNPYGSLN------PRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVG 142
Query: 150 LSNVARRNISELTPSEH-------------RRVVIGTQLVKDPVLLLLDEPTVNLD 192
L EH +R+ I L+ DP +++ DEP LD
Sbjct: 143 LR------------PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 24/179 (13%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----SGTTRGEIILDGTPM---- 92
L +K++ L++ ++ A +G G GK +L +R + G++ G +
Sbjct: 24 LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83
Query: 93 -SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY-------VRNARIRQV 144
P + G V + + P + Y G +++ Y V + +
Sbjct: 84 VDPVEVRRRIGMVFQKPNPFPKSIYDNIAY-------GARINGYKGDMDELVERSLRQAA 136
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L D + + +++ L+ + +R+ I + P ++L+DEP LDP+ST I ++
Sbjct: 137 LWD-EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
|
Length = 264 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 37/221 (16%)
Query: 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL---FQTTC-- 101
SL + G+ A +G+ GSGK AL ++ GE+ L +S + F
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALA--------GELPL----LSGERQSQFSHITRL 70
Query: 102 -----------GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ + TD++ S + T A + I +V AR Q+ +
Sbjct: 71 SFEQLQKLVSDEWQRNNTDML-SPGEDDTGRTTAEI-IQDEVKD---PARCEQLAQQFGI 125
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ + R L+ E R+ ++ L+ +P LL+LDEP LD S + +L+S +
Sbjct: 126 TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSG 185
Query: 211 SRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLML 250
VL+ R D +P F+ L L G +L
Sbjct: 186 ITLVLVL---NRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
|
Length = 490 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
R+ EL+ + RRV + L +P L+ DEPT LDP I+ + + K+ +L
Sbjct: 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246
+T + +VL + RT + G +I G T
Sbjct: 221 VTHD--LDNVLEWTKRTIFFKDGKIIKDGDT 249
|
Length = 305 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+I+L++ GE+LA+ GS GSGK +LL +I
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLI 83
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 22/186 (11%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
LK +SL + G A+LG G+GK LL ++ RG + + G ++ +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAE----NEK 75
Query: 103 YVNHRTDLI---P-----SLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALS 151
+V + L+ P S TV + + GP + + R+ + L + +
Sbjct: 76 WVRSKVGLVFQDPDDQVFSSTVWDDVAF------GPVNMGLDKDEVERRVEEALKAVRMW 129
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ + L+ + +RV I L DP +++LDEP LDP ++ +L +
Sbjct: 130 DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK 189
Query: 212 RAVLLT 217
++ T
Sbjct: 190 TVIVAT 195
|
Length = 274 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSPQLFQ 98
+L++IS + PG+ + +LG GSGK LL R + T G+I +DG + Q ++
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTL-YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
G + + I S T + L Y + I +V ++ L +V +
Sbjct: 77 KAFGVIPQKV-FIFSGTFRKNLDPYGKW-----------SDEEIWKVAEEVGLKSVIEQF 124
Query: 158 ISELT----------PSEHRRVV-IGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
+L H++++ + ++ +LLLDEP+ +LDP++ +I L
Sbjct: 125 PGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 31/163 (19%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-SSGTTRGEIIL---DGTPMSPQL 96
+L +++ EVRPGE L + G G+GK +LL ++ G+ G I + PQ
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGS--GRISMPADSALLFLPQR 464
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
Y +P T+ + L Y P + +A + VL + L ++A R
Sbjct: 465 -----PY-------LPQGTLREALCY-------PNAAPDFSDAELVAVLHKVGLGDLAER 505
Query: 157 --NIS----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L+ E +R+ L+ P + LDE T LD
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548
|
Length = 604 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 38/172 (22%), Positives = 81/172 (47%), Gaps = 22/172 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPM-----S 93
+K++ ++ G+V A++G G GK +L ++R + +G ++ DGT +
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 94 PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNAR--IRQVLADLALS 151
P + G V + + P E +++ G +++ Y + + + L A+
Sbjct: 89 PVEVRRRIGMVFQQPNPFPKSIYE-------NIAFGARINGYTGDMDELVERSLRKAAVW 141
Query: 152 NVARRNISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ + ++E L+ + +R+ I + +P ++L+DEP LDP+ST I
Sbjct: 142 DECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 46/178 (25%), Positives = 70/178 (39%), Gaps = 51/178 (28%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVIS--RRSSGTTRGEIILDG---TPMSPQ--- 95
++ISLEVR GE+L + G G+G+ L E + R + G G I+L+G +S
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARG---GRIMLNGKEINALSTAQRL 336
Query: 96 ---------------------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134
L C ++R + + A L R
Sbjct: 337 ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR----RGFWI-KPARENAVL------ER 385
Query: 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
Y R I+ A+ A AR L+ ++V+I L P LL++DEPT +D
Sbjct: 386 YRRALNIKFNHAEQA----ART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 44/172 (25%), Positives = 68/172 (39%), Gaps = 52/172 (30%)
Query: 50 VRPGEVLAVLGSKGSGKRALLEVIS--------------------RRSSGTTRGEI---I 86
RPG+V+ +LG G GK L++++ +R GT +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 87 LDG---TPMSPQLFQTTCGYVNHRTDLIPSL---TVEQTLYYAAHLSIGPQVSRYVRNAR 140
+G PQ YV DLIP + V + L + +
Sbjct: 157 YEGELRAVHKPQ-------YV----DLIPKVVKGKVGELL------------KKVDERGK 193
Query: 141 IRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+V+ L L NV R++SEL+ E +RV I L++D + DEP+ LD
Sbjct: 194 FDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
|
Length = 591 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LK+IS ++ G++LAV GS GSGK +LL +I
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMI 472
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 47/201 (23%), Positives = 75/201 (37%), Gaps = 48/201 (23%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR----SSGTTRGEIILDGTPMSPQLFQ 98
LK +S+++ V A++G G GK L ++R + G + LDG ++Q
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ----DIYQ 116
Query: 99 TTCGYVNHRTDL---------IPSLTVEQTLY-----------YAAHL-------SIGPQ 131
V R + P E Y A L +
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDEL 176
Query: 132 VSRYVRNA----RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187
V R +R A + L D AL L+ + +R+ I L DP ++L+DEP
Sbjct: 177 VERSLRQAALWDEVNDRLDDNALG---------LSGGQQQRLCIARCLAVDPEVILMDEP 227
Query: 188 TVNLDPLSTYLIVSMLSSYAK 208
LDP++T I ++ A+
Sbjct: 228 ASALDPIATSKIEDLIEELAE 248
|
Length = 305 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
+ LKD+S + G+ +++G GSGK + +++ GEI + ++ F+
Sbjct: 21 ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFE 79
Query: 99 TT---CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI-RQVLADLALSNVA 154
G V D + V + Y + Y R + L + + A
Sbjct: 80 KLRKHIGIVFQNPD---NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERA 136
Query: 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
+ L+ + +RV I L +P +++LDE T LDP
Sbjct: 137 DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
|
Length = 269 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 26/197 (13%)
Query: 10 EEYYLKIDLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRAL 69
E+ Y ++D G +V + + D+S +R GE+L V G G+G+ L
Sbjct: 243 EDQYPRLDKAP------GEVRLKVDN--LSGPGVNDVSFTLRKGEILGVSGLMGAGRTEL 294
Query: 70 LEVISRRSSGTTRGEIILDGTPMSPQLFQT--TCGYV-----NHRTDLIPSLTVEQTLYY 122
++V+ + T G + LDG + + Q G V R L+ ++V++ +
Sbjct: 295 MKVLY-GALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSL 353
Query: 123 AA--HLSIGPQVSRYVRNARIRQVLAD-LALSNVARRN----ISELTPSEHRRVVIGTQL 175
A + S + +++A +Q ++D + L N+ + I L+ ++V I L
Sbjct: 354 TALRYFS---RAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410
Query: 176 VKDPVLLLLDEPTVNLD 192
+ P +L+LDEPT +D
Sbjct: 411 MTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---SPQLFQT 99
L++I+ ++ G+ +A++G GSGK + +++R GEI+LDG + + +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRN 417
Query: 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY--VRNARIRQVL-----ADLALSN 152
V+ L T+ + YA Q SR AR+ + D L
Sbjct: 418 QVALVSQNVHLFND-TIANNIAYAR----TEQYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
V N L+ + +R+ I L++D +L+LDE T LD S I + L K ++
Sbjct: 473 VIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 213 AV----LLTMEK 220
V L T+EK
Sbjct: 533 LVIAHRLSTIEK 544
|
Length = 582 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 34/170 (20%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT 100
L+L++I+L V +A++G GSGK L ++ T GEI LDG P+S
Sbjct: 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSS------ 407
Query: 101 CGYVNHRTDLIPSLTVEQ-------TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV 153
++H V+Q T A++++G R + ++ Q L + L+ +
Sbjct: 408 ---LSHSVLRQGVAMVQQDPVVLADTFL--ANVTLG----RDISEEQVWQALETVQLAEL 458
Query: 154 ARR-------NISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
AR + E L+ + + + + LV+ P +L+LDE T N+D
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508
|
Length = 592 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 41/172 (23%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG 102
++D+S E +PG+ +A++G G+GK L+ ++ R + G I++DGT
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQS-GRILIDGT------------ 397
Query: 103 YVNHRTDLIPSL-----TVEQT--LY---YAAHLSIG-PQVSRYVRNARIRQVL-ADLAL 150
+ RT SL V Q L+ ++ +G P + + +R A
Sbjct: 398 --DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDAT----DEEMRAAAERAQAH 451
Query: 151 SNVARR------NISE----LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ R+ + E L+ E +R+ I L+KDP +L+LDE T LD
Sbjct: 452 DFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503
|
Length = 588 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065|consensus | 1391 | 100.0 | ||
| KOG0061|consensus | 613 | 100.0 | ||
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065|consensus | 1391 | 100.0 | ||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0059|consensus | 885 | 100.0 | ||
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| KOG0054|consensus | 1381 | 99.95 | ||
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.95 | |
| KOG0054|consensus | 1381 | 99.95 | ||
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.95 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.9 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.9 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.9 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.9 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.89 | |
| KOG0927|consensus | 614 | 99.88 | ||
| KOG0927|consensus | 614 | 99.88 | ||
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.87 | |
| KOG2355|consensus | 291 | 99.84 | ||
| KOG0060|consensus | 659 | 99.83 | ||
| KOG0062|consensus | 582 | 99.83 | ||
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.83 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.83 | |
| KOG0066|consensus | 807 | 99.82 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.8 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.79 | |
| KOG0062|consensus | 582 | 99.79 | ||
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.78 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.77 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.76 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.76 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.75 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.74 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.72 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.71 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.71 | |
| KOG0064|consensus | 728 | 99.7 | ||
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.69 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.66 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.66 | |
| KOG0063|consensus | 592 | 99.62 | ||
| KOG0066|consensus | 807 | 99.6 | ||
| PF06422 | 103 | PDR_CDR: CDR ABC transporter; InterPro: IPR010929 | 99.58 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.58 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.54 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.47 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.44 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.42 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.38 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.37 | |
| KOG0063|consensus | 592 | 99.35 | ||
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.34 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.34 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.3 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.3 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.26 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.24 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.19 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.18 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.17 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.17 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.15 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.15 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.13 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.11 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.1 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.05 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.05 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.05 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.03 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.99 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.98 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.97 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.92 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 98.89 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.88 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.85 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.85 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.83 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.79 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.79 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.79 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.78 | |
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 98.78 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.76 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 98.72 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.71 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.7 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.64 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.55 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.52 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.49 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.48 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 98.48 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.46 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.44 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.44 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.44 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.43 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.43 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.42 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.38 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.28 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.26 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.22 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.21 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.21 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.2 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.19 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.19 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.17 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.16 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 98.09 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.05 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.05 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.05 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.03 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.02 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.02 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 98.01 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 97.99 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.98 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 97.97 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.95 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.95 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 97.93 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 97.91 |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-93 Score=870.39 Aligned_cols=542 Identities=22% Similarity=0.307 Sum_probs=444.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC---CCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS---GTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~---~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~ 112 (606)
++++||+|+|+.+++||+++|+||||||||||||+|+|+.+ .+.+|+|.+||++++. ..+|+.++|++|++.++|
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 45689999999999999999999999999999999999863 2578999999998743 235677999999999999
Q ss_pred CCCHHHHHHHHHHccCCC----CCCHHHHHHH-HHHHHHHcCCchhhccc-----CCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 113 SLTVEQTLYYAAHLSIGP----QVSRYVRNAR-IRQVLADLALSNVARRN-----ISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~-----v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
.+||+|||.|+++++.+. +.++++..++ ++++++.+||+++.|++ +++|||||||||+||++|+.+|+++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998876432 2344444444 46789999999888765 5789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCC
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPE 262 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~ 262 (606)
+|||||+|||+.++.++++.|++++++.|+|+|+++|||+++++++||+|++|++|+++|+|+++++++||+++||+||+
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~ 311 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD 311 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999997678999999999988999999999999999999999999999999999999999
Q ss_pred CCCchhhhhhcccc-cchhhHHHhhcHHHHHHHHHHHHHcCCccccccccccc---cC-----------------C---C
Q psy10223 263 LENPLMYYLCLSTV-DRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIM---DH-----------------G---N 318 (606)
Q Consensus 263 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~---~~-----------------~---~ 318 (606)
++||+||++++... +++.++++++..+++.+++++.|+++..+++...+... .. . .
T Consensus 312 ~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1394)
T TIGR00956 312 RQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTR 391 (1394)
T ss_pred CCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhccccc
Confidence 99999999987654 34444455555666777787777776544433222110 00 0 0
Q ss_pred CCCcccccccccc---ccc------c---------------------CCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10223 319 STIPSLTSHKMPL---VNF------S---------------------KPGGFQDYQWSFMSRNGLIFSSISGSYFISTFI 368 (606)
Q Consensus 319 ~~~~~~~~~~~~~---~~~------~---------------------~~~~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~ 368 (606)
...+...+...++ ..+ + .+.....++.++++|.|++|+++++..|.+ +.
T Consensus 392 ~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~-~~ 470 (1394)
T TIGR00956 392 PSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSS-LL 470 (1394)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH-HH
Confidence 0000000000000 000 0 001112567789999999999999888876 67
Q ss_pred HHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHHHHHHHHHHHHHHHHH
Q psy10223 369 AAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQFSLMLWSCFLFAEYLS 447 (606)
Q Consensus 369 ~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~~l~~~~~~~~~~s~~ 447 (606)
++..++.+|+||+||+++++|||++|++|++++|+|+.++.+++|++|+|||+||++++ .||+|+++++++.+++++++
T Consensus 471 ~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 471 EIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999998765 46666688888888888999
Q ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccC
Q psy10223 448 VALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCT 527 (606)
Q Consensus 448 ~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~ 527 (606)
+.+++++++...|. ..++++++++++|+||++|+++||+||+|++|+||++|||||++.|||. +..+.|.
T Consensus 551 ~~i~a~~~~~~~A~-~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~---------~~~~~C~ 620 (1394)
T TIGR00956 551 RSIGAVTKTLSEAM-TPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFH---------GRRFECS 620 (1394)
T ss_pred HHHHHhcCCHHHHH-HHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhc---------CCccccc
Confidence 99999888765554 4555557788999999999999999999999999999999999777655 6778997
Q ss_pred CCCCCCCccCCh--hHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhh
Q psy10223 528 IPHPFGCRYTDG--ASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602 (606)
Q Consensus 528 ~~~~~~c~y~~g--~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~ 602 (606)
..+|.+..|.+. .+..|...|+.+| +.+|+|++||+..|| |+++|+|| |+||+++|+++|.++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g------~~~~~G~~~L~~~~~-----~~~~~~w~-n~gil~~~~v~f~~~ 685 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPG------QDYVDGDDYLKLSFQ-----YYNSHKWR-NFGIIIGFTVFFFFV 685 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCC------cccccHHHHHHhcCC-----cccchhhH-HHHHHHHHHHHHHHH
Confidence 666777777653 4667999999999 559999999999999 99999999 999999999999875
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-93 Score=817.62 Aligned_cols=538 Identities=22% Similarity=0.321 Sum_probs=444.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+||+|+|+.++|||++.++||+|||||||||+|+|..+. ...|+|.|||.+.++...++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 35799999999999999999999999999999999998753 2358999999998764457899999999999999999
Q ss_pred HHHHHHHHHccCCC----CCCHHHHHH-HHHHHHHHcCCchhhccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 117 EQTLYYAAHLSIGP----QVSRYVRNA-RIRQVLADLALSNVARRN-----ISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 117 ~e~l~f~~~~~~~~----~~~~~~~~~-~v~~~l~~lgL~~~~~~~-----v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+|+|.|+++++.+. +.++.++.. ..+.+++.+||++++|++ +|++||||||||+||++++.+|++++|||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 99999999998663 234444333 567788999999988776 48999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCc
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENP 266 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~ 266 (606)
+|+|||+.++.++++.||++++..+.|.+++++||+++++++||+|++|++|++||+||.+++++||+++||.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcccccchhhHHHhh--cHHHHH-HHHHHHHHcCCccccccccccccCCCC--CCccccc--ccc----------
Q psy10223 267 LMYYLCLSTVDRRSRERFIE--SNNQIV-ALVEKFKIEGAPYRKCASSVIMDHGNS--TIPSLTS--HKM---------- 329 (606)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~--~~~---------- 329 (606)
+||+.++...-.+.+....+ ..+.++ ++++++|.++..+++...+........ ....... ...
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~ 446 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACT 446 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHH
Confidence 99999876621111221112 233444 788888888876665543322100000 0000000 000
Q ss_pred ------------------------ccccccCCcchH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q psy10223 330 ------------------------PLVNFSKPGGFQ-DYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEA 384 (606)
Q Consensus 330 ------------------------~~~~~~~~~~~~-~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~ 384 (606)
+++.++.+.... .+..+...|+|++||++.+.+|.+ +.++....+.||||+|||
T Consensus 447 ~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~-laEi~~~~~~~pv~~Khr 525 (1391)
T KOG0065|consen 447 IREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG-LAEIALTFQRLPVFYKHR 525 (1391)
T ss_pred HHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-HHHHHHHHhhcchHHHhh
Confidence 000001111111 345567889999999999988776 899999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q psy10223 385 QEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVV 463 (606)
Q Consensus 385 ~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~ 463 (606)
...+|+|+|++++.+++++|++++.+++|.+|+||++||+++| +||++||+++++..++.++++.+++++++...|+.
T Consensus 526 ~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~- 604 (1391)
T KOG0065|consen 526 DLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANL- 604 (1391)
T ss_pred cccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhh-
Confidence 9999999999999999999999999999999999999997765 57777788888888888888888887776655544
Q ss_pred HHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCCCCCCCccCCh--hH
Q psy10223 464 SSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHPFGCRYTDG--AS 541 (606)
Q Consensus 464 ~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~~~~~c~y~~g--~~ 541 (606)
.+.+.++++.+|+||+||.++||+||+|++|+||+.||||+|+.|| |+++++.|+ |.|+.|.|. ++
T Consensus 605 ~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NE---------F~~~~~~c~---p~gp~y~n~~~~~ 672 (1391)
T KOG0065|consen 605 IGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNE---------FHGRRWPCS---PSGPAYDNISIEN 672 (1391)
T ss_pred HhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhh---------hhcccCCCC---CCCCccccccccc
Confidence 4555677888999999999999999999999999999999995555 558889996 778888764 57
Q ss_pred HHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhh
Q psy10223 542 FLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602 (606)
Q Consensus 542 ~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~ 602 (606)
..|...|..+| +.+|+|++|++.+|+ |.+.|.|| |+||+++|.++|.++
T Consensus 673 ~~c~~~~~~~G------~~~v~g~~~l~~~~~-----y~~~~~Wr-~~gillgf~v~f~~~ 721 (1391)
T KOG0065|consen 673 KVCAATGATLG------NDYVSGRDYLKVQYQ-----YEYKWYWR-NFGILLGFTVFFNFV 721 (1391)
T ss_pred ccchhhccccC------ceEEecccccccccc-----cccceeEe-ehhHHHHHHHHHHHH
Confidence 88999999999 669999999999999 99999999 999999999999875
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-88 Score=763.12 Aligned_cols=519 Identities=30% Similarity=0.504 Sum_probs=419.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+.+++|+|||+.++|||++||||||||||||||++|+|+..+ ..+|+|++||++.+.+.+++.+|||.|||.++|+||
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 357899999999999999999999999999999999999863 478999999988877788999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC-----CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS-----ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~-----~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|+|+|.|++++|.+...++++++++++++++++||.+++|+.++ ++||||||||+||.+|+++|+||++||||+|
T Consensus 121 V~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 121 VRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 99999999999999888999999999999999999999999984 7999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCchhhh
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~~ 270 (606)
||+.++.++++.|+++|++ |+|||+|+|||+.+++++||++++|++|+++|+|+++++.+||++.|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccchhhHHHhhcHHHHHHHHHHHHHcCCcccccc----ccccccCCCC---CCccccccc----ccc-ccccCCc
Q psy10223 271 LCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCA----SSVIMDHGNS---TIPSLTSHK----MPL-VNFSKPG 338 (606)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~~~---~~~~~~~~~----~~~-~~~~~~~ 338 (606)
+++.+.+...++ ....++.....+.+.. .....+.. .......... ...+..+.. ..+ ...+.+.
T Consensus 280 l~l~s~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~ 356 (613)
T KOG0061|consen 280 LDLLSVDSGTRE--LEEAVRIAKLINKFSQ-TDNLKKTLEALEKSLSTSKKVEIGTSPSWWTQFKILLKRSLKNIRRDPS 356 (613)
T ss_pred HHHHccCCCchh--HHhHHHHHHHhhhccc-cchhhhhHHHHhhhcccccccccccCCcHHHHHHHHHHHHhHHHhhcHH
Confidence 998775411111 1111222222111110 00000000 0000000000 000000000 000 0000010
Q ss_pred ---------------------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHH
Q psy10223 339 ---------------------GFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILT 397 (606)
Q Consensus 339 ---------------------~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la 397 (606)
....+..++++|.|++|+.+....|.+++.++..|+.||++|.||+.+++|+.++|++|
T Consensus 357 ~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la 436 (613)
T KOG0061|consen 357 LLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLA 436 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHH
Confidence 01146667779999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhhe
Q psy10223 398 YIFFSLPFSILSVGAASWIIFQATGLSTS-TDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGS 476 (606)
Q Consensus 398 ~~l~dlP~~~~~~~if~~i~Yfm~gl~~~-~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~ 476 (606)
++++++|+.++.+++|++|+|||+|++.+ .+|+++.+++++..+++++++.++++.+++. ..+...++++++++++++
T Consensus 437 ~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~-~~a~~~~~~~~~~f~l~~ 515 (613)
T KOG0061|consen 437 KTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNL-SLATSLGPVLLLPFLLFG 515 (613)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-hheeehHHHHHHHHHHHh
Confidence 99999999999999999999999999755 5677777889999999999999999999884 445555555677889999
Q ss_pred eeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCCCCCCCccCChhHHHhhhcCCCCCcccc
Q psy10223 477 GYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSF 556 (606)
Q Consensus 477 Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~~~~~c~y~~g~~~l~~~~g~~~g~~~~ 556 (606)
||+++.+++|.||+|++|+|+++|++|++++|||++ ....|....+ .|...++.++++.
T Consensus 516 G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~---------~~~~~~~~~~-~~~~~~~~~~l~~----------- 574 (613)
T KOG0061|consen 516 GFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG---------GSSRCFLSGN-LCCESTGEDVLKQ----------- 574 (613)
T ss_pred hhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc---------cccccccCcC-CcccccHHHHHHh-----------
Confidence 999999999999999999999999999999999882 3456643222 3334555555543
Q ss_pred cceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhhc
Q psy10223 557 FITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLMD 603 (606)
Q Consensus 557 ~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~~ 603 (606)
.+ +.-.|.|. |+.++.+|.++|.++.
T Consensus 575 ---------------~~-----~~~~~~~~-~l~~l~~~~~~~~il~ 600 (613)
T KOG0061|consen 575 ---------------LG-----FEDSSFWL-DLLVLLAFIVFFRVLG 600 (613)
T ss_pred ---------------cC-----Ccccccch-hHHHHHHHHHHHHHHH
Confidence 23 56677899 9999999999987763
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-87 Score=759.90 Aligned_cols=519 Identities=25% Similarity=0.403 Sum_probs=412.2
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC--CeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT--TRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~--~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++++|+|+|+++++||+++|+|||||||||||++|+|+.++. .+|+|.+||.+++...+++.++|++|+|.++|.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3578999999999999999999999999999999999987632 47999999999875567888999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC------CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS------ELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~------~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
|+|||.|+++++.+...++++++++++++++.+||.++.|+.++ +|||||||||+||++|+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988776666777778889999999999999999876 699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCchhh
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMY 269 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~ 269 (606)
|||+.++.++++.|+++++ .|+|+|+++|||+.+++++||++++|++|+++|+|+++++++||+++|++||+..||+|+
T Consensus 196 gLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~ 274 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADF 274 (617)
T ss_pred chhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHH
Confidence 9999999999999999986 489999999999889999999999999999999999999999999999999999999999
Q ss_pred hhhcccccchhhHHHhhcHHHHHHHHHHHHHcCCcccccccccc---c-cC---CCCC----Ccccccccccc---ccc-
Q psy10223 270 YLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVI---M-DH---GNST----IPSLTSHKMPL---VNF- 334 (606)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~-~~---~~~~----~~~~~~~~~~~---~~~- 334 (606)
++++...+....+ +...+.++..+.+ .++..+++...... . .. .... .........++ ..+
T Consensus 275 ~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~ 350 (617)
T TIGR00955 275 YVQVLAVIPGSEN---ESRERIEKICDSF-AVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRS 350 (617)
T ss_pred HHHHhhcCccccc---chHHHHHHHHHHH-hcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHHH
Confidence 9987654322111 1111222222222 22211111110000 0 00 0000 00000000000 000
Q ss_pred -----cCC---------------------cchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCc
Q psy10223 335 -----SKP---------------------GGFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGL 388 (606)
Q Consensus 335 -----~~~---------------------~~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~ 388 (606)
+.+ .....++.++++|.|++|+++++..|.+++..+..++.+|++|+||+.+++
T Consensus 351 ~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~ 430 (617)
T TIGR00955 351 WLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGL 430 (617)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 011146778899999999998888888777888899999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTD-LFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~-~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~ 467 (606)
|++++|++|++++|+|+.++.+++|++|+|||+|++.++. ||+|+++++++.++++++++.+++++++...|+.. +++
T Consensus 431 Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~-~~~ 509 (617)
T TIGR00955 431 YRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV-GPP 509 (617)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH-HHH
Confidence 9999999999999999999999999999999999987654 55666777888888999999999988887655554 445
Q ss_pred HHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCcc-ccCCCCCCCCccCChhHHHhhh
Q psy10223 468 NIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYS-NCTIPHPFGCRYTDGASFLSER 546 (606)
Q Consensus 468 ~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~-~C~~~~~~~c~y~~g~~~l~~~ 546 (606)
+++++++|+||+++.++||+||+|++|+||++||+|+++.|||. +..+ +|.+... +..|
T Consensus 510 ~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~---------~~~~~~c~~~~~---------~~~c-- 569 (617)
T TIGR00955 510 FVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWS---------DVDNIECTSANT---------TGPC-- 569 (617)
T ss_pred HHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhC---------CCccccccCcCc---------CCCC--
Confidence 56778899999999999999999999999999999999888887 3332 5632100 0011
Q ss_pred cCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhhc
Q psy10223 547 YGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLMD 603 (606)
Q Consensus 547 ~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~~ 603 (606)
.++|+.+| .+|| ++.+|.|+ |++|+++|.++|.++.
T Consensus 570 --------------~~~g~~~l-~~~g-----~~~~~~~~-~~~il~~~~~~~~~l~ 605 (617)
T TIGR00955 570 --------------PSSGEVIL-ETLS-----FRNADLYL-DLIGLVILIFFFRLLA 605 (617)
T ss_pred --------------CcChHHHH-HhcC-----CCcccHHH-HHHHHHHHHHHHHHHH
Confidence 23565666 4788 99999999 9999999999988763
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-87 Score=811.05 Aligned_cols=518 Identities=18% Similarity=0.230 Sum_probs=402.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC---eeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~---~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
.++.||+|+|+.++|||+++|+||||||||||||+|+|+.+ +. +|+|.+||+++++...++.++|++|+|.|+|++
T Consensus 176 ~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~-~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 176 TKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC-CCCcceeEEEECCEechhhcccceeEEecccccCCCcC
Confidence 35789999999999999999999999999999999999986 44 899999999886544577899999999999999
Q ss_pred CHHHHHHHHHHccCCC-------CCCHHHH------------------------HHHHHHHHHHcCCchhh-----cccC
Q psy10223 115 TVEQTLYYAAHLSIGP-------QVSRYVR------------------------NARIRQVLADLALSNVA-----RRNI 158 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~-----~~~v 158 (606)
||+|||.|+++++.+. ..++.++ +..++++++.+||+++. |+.+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999998765321 1112211 12357789999999876 4567
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
++|||||||||+||++|+.+|+++||||||+|||+.++.++++.|++++++.|+|+|+++|||.++++++||+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 89999999999999999999999999999999999999999999999988778999999999998999999999999999
Q ss_pred eEEEecChhHHHHHHHHcCCCCCCCCCchhhhhhcccccchhhHHHhhc-HH---HHHHHHHHHHHcCCccccccccccc
Q psy10223 239 DLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIES-NN---QIVALVEKFKIEGAPYRKCASSVIM 314 (606)
Q Consensus 239 ~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~s~~~~~~~~~~~~ 314 (606)
+++|+||++++++||+++||+||++.||+||++++...+.+... +.+. .| ++.+++++.|+++..+++...+...
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 493 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQY-WADRNKPYRYISVSEFAERFKSFHVGMQLENELSV 493 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhh-hhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988664322111 1111 22 2344555555555433322221110
Q ss_pred c------CCC--CCCcccccccccc---ccc------cCCcc------------------hH------hhHHHHHHHHHH
Q psy10223 315 D------HGN--STIPSLTSHKMPL---VNF------SKPGG------------------FQ------DYQWSFMSRNGL 353 (606)
Q Consensus 315 ~------~~~--~~~~~~~~~~~~~---~~~------~~~~~------------------~~------~~~~~~~~r~g~ 353 (606)
. +.. ....+......++ ..+ +.+.. |. .+....+.+.|.
T Consensus 494 ~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~ 573 (1470)
T PLN03140 494 PFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGA 573 (1470)
T ss_pred hhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHH
Confidence 0 000 0000000000000 000 00000 00 111233456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHH
Q psy10223 354 IFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQF 432 (606)
Q Consensus 354 lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~ 432 (606)
+||++++.+|.+ +.++..++.+||||+||+++++|+|++|++|++++|+|+.++.+++|++|+|||+||++++ +||+|
T Consensus 574 lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f 652 (1470)
T PLN03140 574 LLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQ 652 (1470)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHH
Confidence 888887777655 7889999999999999999999999999999999999999999999999999999998665 56666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccC
Q psy10223 433 SLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGD 512 (606)
Q Consensus 433 ~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~ 512 (606)
+++++++.+++.++++.+++++++...| ...++++++++++|+||+||+++||+||+|++|+||++|||||++.|||.+
T Consensus 653 ~l~~~l~~~~~~~l~~~i~a~~~~~~~A-~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~ 731 (1470)
T PLN03140 653 LLLVFLIQQMAAGIFRLIASVCRTMIIA-NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFA 731 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccC
Confidence 7888888999999999999988876554 445556677889999999999999999999999999999999999999863
Q ss_pred cccccccCCCccccCCCCCCCCccCChhHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccc--cccchh
Q psy10223 513 GRLRNMYSDKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDV--LDSNFN 590 (606)
Q Consensus 513 ~~~~~ef~~~~~~C~~~~~~~c~y~~g~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~--wr~n~g 590 (606)
+++ .| ..| . + +..+.|++|| .+|| |..+|. |+ |+|
T Consensus 732 ~~~---------~~-----~~~----------~------~------~~~~~G~~~L-~~~g-----~~~~~~~~w~-~~~ 768 (1470)
T PLN03140 732 PRW---------MN-----KMA----------S------D------NSTRLGTAVL-NIFD-----VFTDKNWYWI-GVG 768 (1470)
T ss_pred ccc---------cC-----ccc----------C------C------CCcccHHHHH-HhcC-----cCccccchhh-hHH
Confidence 221 11 011 1 1 1257899999 6789 887766 99 999
Q ss_pred HHHHHHHHHHhh
Q psy10223 591 MTITLSFAFTLM 602 (606)
Q Consensus 591 i~~~~~~~~~~~ 602 (606)
|+++|+++|.++
T Consensus 769 iL~~~~v~f~~l 780 (1470)
T PLN03140 769 ALLGFTILFNVL 780 (1470)
T ss_pred HHHHHHHHHHHH
Confidence 999999999876
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-85 Score=745.86 Aligned_cols=498 Identities=24% Similarity=0.344 Sum_probs=384.5
Q ss_pred CccEEEEE-EEEeeccccc-Cc-------------eeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHH
Q psy10223 9 EEEYYLKI-DLQHPALVET-GS-------------CFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73 (606)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~-~~-------------~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L 73 (606)
...++++. |+.+.+.... .. ..++....++++++|+|+|+++++||+++|+||||||||||||+|
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iL 114 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHH
Confidence 44567777 8888765432 00 011112233457899999999999999999999999999999999
Q ss_pred HcCCCCC-CeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch
Q psy10223 74 SRRSSGT-TRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152 (606)
Q Consensus 74 ~g~~~~~-~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 152 (606)
+|+.++. .+|+|.+||+++.. ..++.++||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||.+
T Consensus 115 aG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 115 AGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred hCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 9998632 48999999998754 345679999999999999999999999887665544566666778999999999998
Q ss_pred hhcc-----cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 153 VARR-----NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 153 ~~~~-----~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
+.|+ .+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||..++.+
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~ 272 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQ 272 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHH
Confidence 7754 4678999999999999999999999999999999999999999999999986 589999999999878999
Q ss_pred cCCeEEEEcCCeEEEecChhHHHHHHHHcCCCCCCCCCchhhhhhcccccchhhH-HHhhcHHHHHHHHHHHHHcCC---
Q psy10223 228 FLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRE-RFIESNNQIVALVEKFKIEGA--- 303 (606)
Q Consensus 228 ~~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~--- 303 (606)
+||++++|++|++++.|+++++++||+++|++||++.||+||++++...+.+... ...+.....+.+.+.+.....
T Consensus 273 ~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (659)
T PLN03211 273 MFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKV 352 (659)
T ss_pred hhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHH
Confidence 9999999999999999999999999999999999999999999998654321100 000000000111111111000
Q ss_pred --------ccccccccc----cccCCCCCCcccccccccc---ccc-----cCCc-c------------------hHhhH
Q psy10223 304 --------PYRKCASSV----IMDHGNSTIPSLTSHKMPL---VNF-----SKPG-G------------------FQDYQ 344 (606)
Q Consensus 304 --------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~-----~~~~-~------------------~~~~~ 344 (606)
..+...... .................++ ..+ +.+. . ++.+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~ 432 (659)
T PLN03211 353 KAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDF 432 (659)
T ss_pred HHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 000000000 0000000000000000000 000 0000 0 01345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccC
Q psy10223 345 WSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLS 424 (606)
Q Consensus 345 ~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~ 424 (606)
.++++|.|++|+++.+..+.+++.++..|+.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||+
T Consensus 433 ~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~ 512 (659)
T PLN03211 433 RDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCc
Confidence 67899999999998888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHH
Q psy10223 425 TS-TDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGA 503 (606)
Q Consensus 425 ~~-~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~e 503 (606)
.+ .+||+|+++++++.++++++++.+++++++...|+.+. +++++++++|+||+++ +||+||+|++|+||++||||
T Consensus 513 ~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~-~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~e 589 (659)
T PLN03211 513 PELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIV-TVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYR 589 (659)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHH
Confidence 65 45777778889999999999999999988766555544 4557788999999997 79999999999999999999
Q ss_pred HHHHHhcc
Q psy10223 504 FLSRQMFG 511 (606)
Q Consensus 504 al~~nef~ 511 (606)
+++.|||+
T Consensus 590 al~~nef~ 597 (659)
T PLN03211 590 LLINVQYG 597 (659)
T ss_pred HHHHHhcC
Confidence 99999997
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-83 Score=778.34 Aligned_cols=540 Identities=20% Similarity=0.357 Sum_probs=415.1
Q ss_pred EEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCE
Q psy10223 13 YLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGT 90 (606)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~ 90 (606)
++.. |+.+.+..+... ++.-...+++++|+|||+.++|||+++|+||||||||||||+|+|+.++ +.+|+|.+||.
T Consensus 867 ~~~~~~v~y~v~~~~~~--~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEM--KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred eEEEEEEEEEEccCccc--cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 4555 777765432211 1110112345799999999999999999999999999999999999752 46899999998
Q ss_pred eCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC-----CCCCHHH
Q psy10223 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI-----SELTPSE 165 (606)
Q Consensus 91 ~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-----~~LSgGe 165 (606)
+.+...+++.+||++|+|.++|.+||+|||.|++.++.+...+++++.++++++++.++|.++.|+.+ ++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87644567789999999999999999999999988776555666666778999999999999999986 6899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEEEec
Q psy10223 166 HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAG 244 (606)
Q Consensus 166 rqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v~~G 244 (606)
||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+|
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999998788999999999996 8999999
Q ss_pred Ch----hHHHHHHHHc-CCC-CCCCCCchhhhhhcccccch------hhHHHhhcHH--HHHHHHHHHHHcCCccccccc
Q psy10223 245 PT----RLMLEYFRSI-GFP-CPELENPLMYYLCLSTVDRR------SRERFIESNN--QIVALVEKFKIEGAPYRKCAS 310 (606)
Q Consensus 245 ~~----~~~~~~f~~~-G~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~ 310 (606)
++ +++.+||+++ |++ ||+..||+||.+++...+.. ..+.|.++.. +..++.++..... . . ..
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~-~--~-~~ 1179 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPP-P--G-AS 1179 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCC-C--C-cc
Confidence 96 6899999998 664 99999999999998654321 1122222211 1111111110000 0 0 00
Q ss_pred cccccCCCCCCccccccccc-----cccccCCc---------------------chH---hhHHHHHHHHHHHHHHHHHH
Q psy10223 311 SVIMDHGNSTIPSLTSHKMP-----LVNFSKPG---------------------GFQ---DYQWSFMSRNGLIFSSISGS 361 (606)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---------------------~~~---~~~~~~~~r~g~lf~~~~~~ 361 (606)
+... ......++..+...- +...+.+. ... ....++++|.|++|+++.+.
T Consensus 1180 ~~~~-~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~ 1258 (1470)
T PLN03140 1180 DLYF-ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFV 1258 (1470)
T ss_pred cccc-CccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 0000 000000000000000 00000110 000 12356788899999988877
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCch-hHHHHHHHHHHHHH
Q psy10223 362 YFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTS-TDLFQFSLMLWSCF 440 (606)
Q Consensus 362 ~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~-~~~f~~~l~~~~~~ 440 (606)
.+..+...++.+..||+||+||+.+++|++++|++|++++|+|+.++++++|++|+|||+||+.+ ..||+++++++++.
T Consensus 1259 ~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~ 1338 (1470)
T PLN03140 1259 GINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 77666666778889999999999999999999999999999999999999999999999999765 45777778888888
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccC
Q psy10223 441 LFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYS 520 (606)
Q Consensus 441 ~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~ 520 (606)
++++++++++++++++...|+...+.+ ..++++|+||++|+++||+||+|++|+||++|++++|+.|||+
T Consensus 1339 ~~~~~~g~~~~a~~p~~~~A~~~~~~~-~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~--------- 1408 (1470)
T PLN03140 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAF-YGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYG--------- 1408 (1470)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHH-HHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhC---------
Confidence 999999999999999877766665554 5678899999999999999999999999999999999888876
Q ss_pred CCccccCCCCCCCCccCChhHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHH
Q psy10223 521 DKYSNCTIPHPFGCRYTDGASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFT 600 (606)
Q Consensus 521 ~~~~~C~~~~~~~c~y~~g~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~ 600 (606)
+.+.+|. |+ |..++ ..|++|+...|| |+++|+|+ |++|+++|+++|.
T Consensus 1409 ~~~~~~~------~~------------~~~~~---------~~~~~~~~~~~g-----~~~~~~~~-~~~il~~~~~~f~ 1455 (1470)
T PLN03140 1409 DVEDTIK------VP------------GGAPD---------PTIKWYIQDHYG-----YDPDFMGP-VAAVLVGFTVFFA 1455 (1470)
T ss_pred CCCCccc------CC------------CCCCC---------CcHHHHHHHhcC-----cCcccccc-hhhhHHHHHHHHH
Confidence 4444441 11 11111 247899999999 99999999 9999999999998
Q ss_pred hhc
Q psy10223 601 LMD 603 (606)
Q Consensus 601 ~~~ 603 (606)
++.
T Consensus 1456 ~~~ 1458 (1470)
T PLN03140 1456 FIF 1458 (1470)
T ss_pred HHH
Confidence 763
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-81 Score=762.90 Aligned_cols=541 Identities=21% Similarity=0.303 Sum_probs=409.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|||+++++||+++|+||||||||||||+|+|+.++ +.+|+|.+||++++. .+|+.++|++|++.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 46899999999999999999999999999999999999752 467999999999853 467889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC----CCCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDPV-LLLLDEPTVNL 191 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~~p~-llllDEPTsgL 191 (606)
+|||.|++.++.+...+++++.++++++++.++|.+++|+.++ +|||||||||+||++|+.+|+ ||+|||||+||
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 9999999988765556666777889999999999999999987 899999999999999999997 99999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC-eEEEecCh----hHHHHHHHHcCC-CCCCCCC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG-DLIYAGPT----RLMLEYFRSIGF-PCPELEN 265 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G-~~v~~G~~----~~~~~~f~~~G~-~~~~~~~ 265 (606)
|+.++..+++.|+++++ .|+|||+++|||+..+++.||++++|++| +++|+|++ +++.+||++.|+ +||+..|
T Consensus 934 D~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~N 1012 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDAN 1012 (1394)
T ss_pred CHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHHHHHhcCCCCCCCCCC
Confidence 99999999999999986 58999999999987788999999999997 99999997 578999999996 9999999
Q ss_pred chhhhhhcccccch------hhHHHhhcHH--HHHHHHHHHHHcCCccccccccccccCCCCCCcccccccc-----ccc
Q psy10223 266 PLMYYLCLSTVDRR------SRERFIESNN--QIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKM-----PLV 332 (606)
Q Consensus 266 ~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 332 (606)
|+||++++...+.. ..+.|.++.. +..++.+...... .......+. ........++..+... -+.
T Consensus 1013 pAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~s~~~q~~~l~~R~~~~ 1090 (1394)
T TIGR00956 1013 PAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAEL-SKAEDDNDP-DALSKYAASLWYQFKLVLWRTFQQ 1090 (1394)
T ss_pred HHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhccc-ccCcccccc-ccccccCCCHHHHHHHHHHHHHHH
Confidence 99999987643221 1122222111 0111111110000 000000000 0000000000000000 000
Q ss_pred cccCCc---------------------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhcCCccc
Q psy10223 333 NFSKPG---------------------GFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRY-YQEAQEGLYS 390 (606)
Q Consensus 333 ~~~~~~---------------------~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~-~re~~~~~Y~ 390 (606)
..+.+. ...+++.++++|.|++|+.+.+..+. ....+..++.+|+++ +||+.+++|+
T Consensus 1091 ~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~ 1169 (1394)
T TIGR00956 1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFS 1169 (1394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCC
Confidence 001110 01146778999999999877655443 345677788999886 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh--------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy10223 391 GPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST--------DLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAV 462 (606)
Q Consensus 391 ~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~--------~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~ 462 (606)
+++|++|++++|+|+.++.+++|.+|+|||+|++.++ +||+|+++++++.+++.+++.++++++++...|+.
T Consensus 1170 ~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~ 1249 (1394)
T TIGR00956 1170 WLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAV 1249 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 9999999999999999999999999999999997543 27778888888889999999999999998766655
Q ss_pred HHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCC--------CCCCC
Q psy10223 463 VSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIP--------HPFGC 534 (606)
Q Consensus 463 ~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~--------~~~~c 534 (606)
+.+ +++.++++|+||++|+++||+||+|++|+||++|++++++.|||. +.++.|... ....|
T Consensus 1250 ~~~-~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~---------~~~~~C~~~e~~~f~pp~~~tC 1319 (1394)
T TIGR00956 1250 LAS-LLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLA---------DVPVTCKVKELLTFNPPSGQTC 1319 (1394)
T ss_pred HHH-HHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcC---------CCeeecCccccceecCCCCCCH
Confidence 555 446778999999999999999999999999999999999888877 555667431 12345
Q ss_pred ccCChhHHHhhhcCCCCCcccccc---eeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhh
Q psy10223 535 RYTDGASFLSERYGHETGDFSFFI---TKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLM 602 (606)
Q Consensus 535 ~y~~g~~~l~~~~g~~~g~~~~~~---~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~ 602 (606)
.- -...++...-|+-.+...... =.+.+|++||+ .++ ++++|.|| |+||+++|.++++++
T Consensus 1320 ~~-y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~-----~~~~~~w~-~~~i~~~~~~~~~~~ 1382 (1394)
T TIGR00956 1320 GE-YMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PIS-----SKYSGRWR-NFGIFIAFIFFNIIA 1382 (1394)
T ss_pred HH-HHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcC-----Cccccccc-chhhhhHHHHHHHHH
Confidence 30 012333222222211000000 12569999997 478 99999999 999999999998654
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-81 Score=715.52 Aligned_cols=527 Identities=24% Similarity=0.385 Sum_probs=410.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-CCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+||++.++||-++||||+|||||||||++||||. .|..+|+|++||.+.+++.+++.+|||.|+|.|.|++||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 6789999999999999999999999999999999999995 457789999999999877899999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCC----CCCHHHHHHHHHHHHHhhCC-CEEEEeCCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDP-VLLLLDEPTVNL 191 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~~p-~llllDEPTsgL 191 (606)
+|.|.|+|.+|++..++.+++.+.++++++.++|++++|..|+ |||..||||++||.+|+.+| .||+||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 9999999999999999999988999999999999999998875 59999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEEEecChh----HHHHHHHHcC-CCCCCCCC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAGPTR----LMLEYFRSIG-FPCPELEN 265 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v~~G~~~----~~~~~f~~~G-~~~~~~~~ 265 (606)
|+.+|..+++.+|++++ .|+||+||+|||+.++++.||++++|++ |++||+||.. .+++||++.| .+||+..|
T Consensus 962 DsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred cHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 99999999999999997 6999999999999999999999999987 6899999975 4567999986 89999999
Q ss_pred chhhhhhccccc------chhhHHHhhcH--HHHHHHHHHHHHcCCccccccccccccCCCCCCcccccccccc------
Q psy10223 266 PLMYYLCLSTVD------RRSRERFIESN--NQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPSLTSHKMPL------ 331 (606)
Q Consensus 266 ~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 331 (606)
||+|.++++... ....+-|.++. .++.++++...+..+. ...+ .....++.++...+.
T Consensus 1041 PA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~---~~~~-----~~~~~~fa~s~~~Q~k~~l~R 1112 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPG---FSTD-----LEFKTRFAQSLWYQFKLCLWR 1112 (1391)
T ss_pred hHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCcc---CCcc-----cccccccchhHHHHHHHHHHH
Confidence 999999976432 22233333332 2333333332211110 0000 000000111110000
Q ss_pred ---ccccCCc---------------------chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCC
Q psy10223 332 ---VNFSKPG---------------------GFQDYQWSFMSRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEG 387 (606)
Q Consensus 332 ---~~~~~~~---------------------~~~~~~~~~~~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~ 387 (606)
..++.|. .......+++++.|++|.++.+..-...-........+|.+++||+.++
T Consensus 1113 q~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~ 1192 (1391)
T KOG0065|consen 1113 QFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASN 1192 (1391)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccC
Confidence 0011110 0004566677777777765544322211112233467888889999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q psy10223 388 LYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTST-DLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSY 466 (606)
Q Consensus 388 ~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~-~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~ 466 (606)
+||+.+|++|++++|+|+.++++++|.+++|+|+|+...+ .+++|++..++..++...+++++.+++|+...|+++.+.
T Consensus 1193 mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~ 1272 (1391)
T KOG0065|consen 1193 MYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASL 1272 (1391)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 9999999999999999999999999999999999997654 566666777777888889999999999999999988887
Q ss_pred HHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHHhccCcccccccCCCccccCCC----CCCCCccCChhHH
Q psy10223 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQMFGDGRLRNMYSDKYSNCTIP----HPFGCRYTDGASF 542 (606)
Q Consensus 467 ~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~nef~~~~~~~ef~~~~~~C~~~----~~~~c~y~~g~~~ 542 (606)
+. .++.+|+|+++|++.||.||+|+||+||+.|..++|...+++ +.+..|... ....|+. +-.++
T Consensus 1273 ~~-s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~---------d~~v~c~~~e~~~~~pp~g~-tcge~ 1341 (1391)
T KOG0065|consen 1273 FF-SFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLG---------DVEVTCEDSEMNYFDPPSGQ-TCGEF 1341 (1391)
T ss_pred HH-HHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhC---------CCceeeecCCccccCCCCCc-CHHHH
Confidence 64 567899999999999999999999999999999999887766 555667321 1122332 23466
Q ss_pred HhhhcCCCCCcccccce-------eeechhhhhhhhhCCCCCCcccccccccchhH
Q psy10223 543 LSERYGHETGDFSFFIT-------KYTDGASFLSERYGHETGDFSLSDVLDSNFNM 591 (606)
Q Consensus 543 l~~~~g~~~g~~~~~~~-------~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi 591 (606)
+...+|...|-..|... .+-.+++|| .+|+ .+|.|.|| ||||
T Consensus 1342 m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l-~~f~-----~~y~~~wr-nfgi 1390 (1391)
T KOG0065|consen 1342 MEDFFGEGTGYLHNPLATTACVYCAYTVADAFL-AAFN-----IKYLNFWR-NFGI 1390 (1391)
T ss_pred HHHHhccCcceeccCcceeEEEEeeeehHHHHH-HHHH-----HHHHHHHH-hhcc
Confidence 66777733332211111 144688888 5599 99999999 9998
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=395.55 Aligned_cols=208 Identities=26% Similarity=0.422 Sum_probs=191.7
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~ 112 (606)
++..++|+|||++|++||+++|+||||||||||||||.++.. +++|+|.++|.++.. ...|+++|+|+|+.++||
T Consensus 12 fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~-~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE-PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred eCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC-CCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 345789999999999999999999999999999999999987 889999999987642 347899999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
++||.||+..+... -.+.++++.++++.++|+++||.+.+|.++.+|||||||||+|||||+.+|+++++|||||+||
T Consensus 91 HlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALD 168 (240)
T COG1126 91 HLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD 168 (240)
T ss_pred cchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCC
Confidence 99999999998653 2357888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|....++.+.++++|+ .|.|.|+++|. ...+.+.+|||++|++|+++..|++++.
T Consensus 169 PElv~EVL~vm~~LA~-eGmTMivVTHE-M~FAr~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 169 PELVGEVLDVMKDLAE-EGMTMIIVTHE-MGFAREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHHHHHHHHHH-cCCeEEEEech-hHHHHHhhheEEEeeCCEEEEecCHHHH
Confidence 9999999999999997 58999999996 5689999999999999999999988876
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=405.97 Aligned_cols=214 Identities=31% Similarity=0.461 Sum_probs=194.8
Q ss_pred ccc-ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCC
Q psy10223 36 NIQ-TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 36 ~~~-~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~ 112 (606)
.++ .+.+|+||||++++||++||+||||||||||||+|+|+.+ +++|+|.++|.+... ...++++||++|++.++|
T Consensus 13 ~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~ 91 (293)
T COG1131 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYP 91 (293)
T ss_pred EeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEEcCEeCccCHHHHHhheEEEccCCCCCc
Confidence 344 4789999999999999999999999999999999999998 799999999998764 357788999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+|+|.|.+.++... ....+++++++++.+||.+..++++++||+||||||+||.||+++|+++||||||+|||
T Consensus 92 ~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLD 168 (293)
T COG1131 92 ELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168 (293)
T ss_pred cccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCC
Confidence 999999999999886432 24456789999999999987789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFR 254 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~ 254 (606)
|.++.++++.|+++++++++||++|+|++ +++.++||+|++|++|++++.|+++++...+.
T Consensus 169 p~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~~~g~~~~l~~~~~ 229 (293)
T COG1131 169 PESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKIIAEGTPEELKEKFG 229 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHHhhc
Confidence 99999999999999987668999999976 58999999999999999999999999777653
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=376.38 Aligned_cols=212 Identities=28% Similarity=0.431 Sum_probs=195.9
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~ 109 (606)
+.+++.|++|||++|++||+++|+||||||||||||+|.|+++ |++|+|+++|.++.. ...|+++|+++|...
T Consensus 17 ~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 17 SFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred ecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC-CCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4556899999999999999999999999999999999999998 899999999998743 146789999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+|..|||.||+.|..+-+ ...+++..++.+..-|+.+||... ++.++.+||||||||++||||++.+|+++++||||
T Consensus 96 LFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPt 173 (263)
T COG1127 96 LFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPT 173 (263)
T ss_pred cccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999999999987743 346788888888889999999987 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+||||.++..+.++++++.+..|.|+++++|+- ++++..|||+++|.+|+++..|+++++.+
T Consensus 174 sGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 174 SGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVLADGKVIAEGTPEELLA 235 (263)
T ss_pred CCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999974 68999999999999999999999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=390.44 Aligned_cols=207 Identities=28% Similarity=0.447 Sum_probs=194.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
...+|+|||++|++||+.+|+|+||||||||+|+|.++.. |++|+|.++|.++.. +..|++||+++|+..++.
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~-PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER-PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 3579999999999999999999999999999999999987 899999999988753 247889999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..||.||+.|++++. +.++++.++|+.++|+.+||++..++++.+|||||||||+|||||+.+|+||+.|||||+||
T Consensus 97 srTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALD 173 (339)
T COG1135 97 SRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173 (339)
T ss_pred cchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCC
Confidence 999999999999865 46788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|.++..++++|+++.++.|.||++++|+ ++-+.++||||.||++|++++.|+..++.
T Consensus 174 P~TT~sIL~LL~~In~~lglTIvlITHE-m~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 174 PETTQSILELLKDINRELGLTIVLITHE-MEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 9999999999999999999999999997 46789999999999999999999988764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=376.31 Aligned_cols=217 Identities=27% Similarity=0.434 Sum_probs=200.2
Q ss_pred eeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcC
Q psy10223 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNH 106 (606)
Q Consensus 30 ~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q 106 (606)
++++.+.+.++.+++|+|++|++||+++++|||||||||+||+|.++.. |++|+|.+||++++. ..+|++||||-|
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie-pt~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE-PTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC-CCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 4444556667899999999999999999999999999999999999988 899999999999864 358999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.-.+||++||.||+.+-..+. +.++++.+++++++|+.+||++ .+++++++|||||+|||.+||||+.+|+++++
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM 159 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM 159 (309)
T ss_pred hcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence 999999999999999988764 4567788899999999999974 89999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+++|||.++.++-+.++++.++.|+|+|+++|+ .+++.+++|||++|++|+++-+++|++++.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEEEeCCHHHHHh
Confidence 999999999999999999999999999999999996 679999999999999999999999998864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=384.05 Aligned_cols=214 Identities=25% Similarity=0.396 Sum_probs=191.2
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~ 112 (606)
.++++.+|+|+|+++++||+++|+||||||||||||+|+|.++ +.+|+|.++|+++.. +.+.+.++|+||.....+
T Consensus 11 ~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~-p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~ 89 (258)
T COG1120 11 GYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK-PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPF 89 (258)
T ss_pred EECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCC
Confidence 4557899999999999999999999999999999999999998 789999999998754 457789999999998888
Q ss_pred CCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||.|.+.++..-+.. .....++.++.++++|+.+|+.+.+++.+.+|||||||||.||+||+++|++|+|||||+.|
T Consensus 90 ~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 90 GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 99999999887542111 11123345567999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|...+.++++++++++++.|+|+|+++|++ +.+.++||++++|++|+++..|++++++.
T Consensus 170 Di~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i~a~G~p~evlT 228 (258)
T COG1120 170 DIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKIVAQGTPEEVLT 228 (258)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEeecCcchhcC
Confidence 999999999999999988899999999976 57999999999999999999999988753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=371.81 Aligned_cols=195 Identities=28% Similarity=0.491 Sum_probs=176.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------cc-ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QL-FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~-~~~~i~yv~q~~~~~~ 112 (606)
..+|+++|++|++||+++|+|||||||||||++|+|+.+ |++|+|.++|.++.. .. .++.+|||+|+..+.|
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 579999999999999999999999999999999999998 699999999988753 12 3567999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||.||+.+++.+. ..+....+++++++++.+||.+..+ +++.+|||||||||+|||||+.+|++++.||||.+|
T Consensus 97 ~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnL 173 (226)
T COG1136 97 DLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173 (226)
T ss_pred CCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccC
Confidence 999999999987653 2333355677889999999997766 889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
|+.++.+++++|++++++.|+|+|+++|+| ++.+.|||++.|.+|++
T Consensus 174 D~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 174 DSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220 (226)
T ss_pred ChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCee
Confidence 999999999999999988899999999986 68999999999999983
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=373.45 Aligned_cols=193 Identities=31% Similarity=0.439 Sum_probs=179.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
...+|+|+|++|++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++. .....++||+|++.++|++||.|
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~ 91 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVLD 91 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCcccC--CCCCCEEEEeccCcccchhhHHh
Confidence 3689999999999999999999999999999999999998 88999999999883 34678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.++...+ ..++.+.+++++++|+.+||.+..|+++++|||||||||+|||||+.+|++|+||||+++||+.|+.+
T Consensus 92 NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~ 168 (248)
T COG1116 92 NVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168 (248)
T ss_pred hheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence 999998864 24566677799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
+.+.|.++.++.++|++++||+. +|+..++|||++|.++
T Consensus 169 lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~ 207 (248)
T COG1116 169 LQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCC
Confidence 99999999999999999999975 6889999999999984
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=368.63 Aligned_cols=214 Identities=24% Similarity=0.422 Sum_probs=191.0
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~ 111 (606)
+++++|+|||++|++||+++|+||||||||||||+|+|+.. +.+|+|.++|.++.. +.+|+++||++|++.+.
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d-~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD-PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC-CCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 45789999999999999999999999999999999999887 789999999987643 24688999999999999
Q ss_pred CCCCHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 112 PSLTVEQTLYYAAHLSIGP-----QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|.+||.+|+..+..-+.+. +...++.+.++-++|+++|+.+.+.++...|||||+|||+|||||+++|++++.||
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 9999999998875422111 12234456678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
|++.|||.++..+++.|++++++.|.|+|++.|+ .+-+.++|||++-|++|+++|+||++++.+.+
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~-vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~ 239 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDLAKKYADRIIGLKAGRIVFDGPASELTDEA 239 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCEEEEEech-HHHHHHHHhhheEecCCcEEEeCChhhhhHHH
Confidence 9999999999999999999999999999999997 46789999999999999999999999876543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=391.28 Aligned_cols=205 Identities=26% Similarity=0.440 Sum_probs=193.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|+|+++++||+++|+||||||||||||+|||+.. +++|+|.++|.+++. ...++.+++|+|+..+||+|||+||+
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~-~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE-PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 9999999999999999999999999999999999998 899999999999875 23467899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.|+++.+ +.++++.+++++++.+.|+|++.+|+++++|||||||||+|||||+.+|+++++|||.|+||+..+..+.
T Consensus 97 af~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr 173 (338)
T COG3839 97 AFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMR 173 (338)
T ss_pred hhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHH
Confidence 9999864 4677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..|+++.++.|.|+|.+||+. .|+..++||+.+|++|++...|++.++.+
T Consensus 174 ~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 174 SEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 999999988899999999975 58999999999999999999999999864
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-47 Score=393.62 Aligned_cols=211 Identities=26% Similarity=0.416 Sum_probs=195.5
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~l 114 (606)
.+++..+|+|+|++|++||+++++||||||||||||+|||+.. |++|+|.++|++++. ...++.+++|+|+-.+||+|
T Consensus 14 ~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 14 SFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred ecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 3446789999999999999999999999999999999999998 899999999999875 33578999999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.|+++.+ ....+++.+++++++|+.++|++.+++++.+|||||||||+|||||+.+|++|+||||.++||..
T Consensus 93 tV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~k 170 (352)
T COG3842 93 TVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAK 170 (352)
T ss_pred cHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHH
Confidence 9999999999843 23455667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
-+.++...|+++.++.|.|.|+++|+. +++..++|||.+|++|++.-.|+++++-
T Consensus 171 LR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 171 LREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999975 6899999999999999999999999884
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-47 Score=377.96 Aligned_cols=211 Identities=27% Similarity=0.424 Sum_probs=192.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE---eCCc-ccccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSP-QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~---~~~~-~~~~~~i~yv~q~~~~~~~ 113 (606)
+...+++|||++|+.||++|++||||||||||||+|+|+.. |+.|.|.+||+ +.+. ....++||||+|+-.+||+
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~-p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~H 91 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET-PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPH 91 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC-CCCceEEECCEeccchhccchhhcceeEEEechhhccc
Confidence 34578999999999999999999999999999999999998 89999999999 5443 2235689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|||.||+.|+++.+ ....++.+.+.++.++|+.+.|++.+++++.+|||||||||++||||+.+|++|+||||+++||.
T Consensus 92 mtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa 170 (345)
T COG1118 92 MTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170 (345)
T ss_pred chHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhH
Confidence 99999999999876 22345667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.-+.++.+.|+++.++.|.|+++++|++ +++++++|||++|++|+|...|+++++.+
T Consensus 171 ~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 9999999999999988899999999975 68999999999999999999999999843
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=356.19 Aligned_cols=205 Identities=27% Similarity=0.438 Sum_probs=191.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++||||+++.||+++|+|||||||||+||+|++++. |++|.|.++|.+... ...|++||.++.+..++..||++|
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 49999999999999999999999999999999999998 899999999998743 457899999998888999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
||.|.+++. ++++.+.+.+++++.+.|+|.++.|++++++|.|+||||+|||||+++|++++|||||+|||..+...
T Consensus 95 nl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~ 171 (245)
T COG4555 95 NLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171 (245)
T ss_pred HHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHH
Confidence 999999874 46777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.+.++++.+ .|++||.++| ..+++..+||+|++|++|++++.|+.+++.+
T Consensus 172 ~~dfi~q~k~-egr~viFSSH-~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 172 FHDFIKQLKN-EGRAVIFSSH-IMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHHHhhc-CCcEEEEecc-cHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999865 5999999988 4779999999999999999999999988765
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=366.66 Aligned_cols=205 Identities=28% Similarity=0.477 Sum_probs=179.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC---CCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD---LIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~---~~~~lTV~ 117 (606)
++|+|||+++++||+++|+||||||||||+|+|.|+++ |.+|+|.+.|.+.....-+.+||||||... -|| +||+
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVK 95 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcCcccccCCCCC-cCHH
Confidence 69999999999999999999999999999999999998 789999999998765434578999999642 344 7999
Q ss_pred HHHHHHHHccC--CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 118 QTLYYAAHLSI--GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 118 e~l~f~~~~~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.+..+...+. .+..++ +.+++++++|+.+|+.+.+|+.+++|||||+|||-|||||+++|++|+|||||+|+|+.+
T Consensus 96 d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~ 174 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174 (254)
T ss_pred HHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHH
Confidence 99988743221 112233 346889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.+++++|+++.++ |+||++++|+. ..+.++||+|+.|+ +++++.|+++++.+
T Consensus 175 ~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 175 QKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 99999999999987 99999998865 58999999999995 67889999998754
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=387.07 Aligned_cols=207 Identities=22% Similarity=0.376 Sum_probs=189.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++||+|+..+||++||+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER-ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 3579999999999999999999999999999999999988 789999999998753 12357899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.+||.+..++++++|||||||||+|||||+.+|++++|||||++||+.++.
T Consensus 95 eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~ 171 (356)
T PRK11650 95 ENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRV 171 (356)
T ss_pred HHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999987632 2455566678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 172 ~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 172 QMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 999999999877789999999976 5799999999999999999999998874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=385.67 Aligned_cols=208 Identities=26% Similarity=0.399 Sum_probs=190.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++|++|+..+||++||+
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (353)
T TIGR03265 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER-QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTVA 94 (353)
T ss_pred CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcHH
Confidence 4579999999999999999999999999999999999987 789999999998753 22457899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++++|||||++||+.++.
T Consensus 95 eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~ 171 (353)
T TIGR03265 95 DNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVRE 171 (353)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9999987642 3455666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++.+.|+++.++.|.|+|+++|++ +++.+++||+++|++|+++..|+++++.+
T Consensus 172 ~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 172 HLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999877789999999976 58999999999999999999999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=379.24 Aligned_cols=207 Identities=28% Similarity=0.422 Sum_probs=187.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|||++|++||+++|+||||||||||+|+|+|+.+ +++|+|.++|.++.. ...++.+||++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv 97 (306)
T PRK13537 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97 (306)
T ss_pred CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcH
Confidence 4679999999999999999999999999999999999988 789999999998753 2357789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.+..+ +.+..+..++++++++.++|.+..++++++|||||||||+||+||+++|++++|||||+|||+.++
T Consensus 98 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 98 RENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 99999876543 234445566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++++ .|+|||+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 175 ~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 175 HLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999975 489999999975 58999999999999999999999998864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=364.23 Aligned_cols=208 Identities=27% Similarity=0.420 Sum_probs=184.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4579999999999999999999999999999999999987 789999999988642 234678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+..... ...++.+..+++.++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||
T Consensus 91 ~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD 168 (235)
T cd03261 91 SLTVFENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168 (235)
T ss_pred CCcHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCC
Confidence 999999998875422 123444456678899999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 169 ~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 169 PIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999765588999999975 4788999999999999999999987653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=380.49 Aligned_cols=206 Identities=26% Similarity=0.398 Sum_probs=187.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. . ..|+.++|++|+..+++.
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~-p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~ 96 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSS 96 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccccc
Confidence 579999999999999999999999999999999999988 789999999998753 1 246789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.++.... ..++.+.++++.++++.+||.+..|+++++|||||||||+|||||+.+|++|++||||++||+
T Consensus 97 ~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~ 173 (343)
T TIGR02314 97 RTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (343)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 99999999877532 235556677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+++.|++++++.|.|+|+++|+. +.+.++||+|++|++|++++.|+++++.
T Consensus 174 ~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 174 ATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999876789999999974 5788999999999999999999988764
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=382.38 Aligned_cols=207 Identities=20% Similarity=0.405 Sum_probs=189.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++... ..++.++|++|+..+||++||.
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~ 96 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK-PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLG 96 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCHH
Confidence 3579999999999999999999999999999999999998 7899999999987532 2357899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.++|.+..+++++.|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 97 eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~ 173 (351)
T PRK11432 97 ENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173 (351)
T ss_pred HHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 9999987643 2455666788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++.+++||+++|++|+++..|+++++.
T Consensus 174 ~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 174 SMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999877789999999976 5799999999999999999999998874
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=381.24 Aligned_cols=208 Identities=22% Similarity=0.364 Sum_probs=188.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe--eEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR--GEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~--G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++ |+|.++|.++.. ...++.++|++|+..++|++|
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK-AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 4579999999999999999999999999999999999987 788 999999998753 123568999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++++|||||+|||+.+
T Consensus 96 v~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~ 172 (362)
T TIGR03258 96 VEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANI 172 (362)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 999999987643 34555667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRK-SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~-g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.+.|+++.++. |.|+|+++|++ +++..++|+|++|++|+++..|+++++.+
T Consensus 173 r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 173 RANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999998765 78999999975 57899999999999999999999988753
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=374.63 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=186.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR-PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 4579999999999999999999999999999999999987 789999999998743 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.+..+ +.+..+..++++++++.++|.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 99999876543 234444566789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+++.|++++++ |+|+|+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 161 ~~l~~~l~~~~~~-g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 161 RAIWDYIRALKEE-GVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999764 89999999975 58899999999999999999999988765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=339.22 Aligned_cols=202 Identities=25% Similarity=0.424 Sum_probs=184.7
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
=.+++.|++||++||+||||||||||||+|+|... |.+|+|++||++.... ..++-+++++|+.++|.+|||.+|+.+
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~-P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET-PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC-CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 46889999999999999999999999999999988 7899999999998642 356789999999999999999999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
+.. |.-.-..+.+++++.++..+||..+.++.+.+|||||||||++||+|+.+-+|++||||++.|||.-+.+...+
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 764 21112345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.+++++.+.|+++++|||. ++..++|+++++++||+.+.|++++..
T Consensus 172 v~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 172 VSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHHh
Confidence 99999999999999999984 899999999999999999999998765
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=340.00 Aligned_cols=199 Identities=28% Similarity=0.407 Sum_probs=184.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+++|+|||+.+++||++-|+||||||||||||+|.+..+ |++|+|+++|.+++. ..+|++||.|+||..+.++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~-pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER-PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc-CCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence 669999999999999999999999999999999999988 889999999999863 1368999999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.||.||+.|+++.. +.++.+.++++.++|+.+||.+.++..+.+|||||||||+||||++.+|++|+.||||.+|||
T Consensus 94 ~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp 170 (223)
T COG2884 94 RTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170 (223)
T ss_pred chHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCCh
Confidence 99999999998854 467788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
..+.++++++.++.+ .|+||++++|+ .+-+-++-.|++.|++|+++.+.
T Consensus 171 ~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 171 DLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999975 69999999996 45677778899999999998764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-44 Score=376.30 Aligned_cols=208 Identities=28% Similarity=0.408 Sum_probs=187.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.+||++|++.+++.+|
T Consensus 52 ~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~-p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 52 GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS-PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 34679999999999999999999999999999999999988 789999999998753 235678999999999999999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.|++.+....+ ..+..+..++++++++.++|.+..++++++|||||||||+||+||+++|++++|||||+|||+.+
T Consensus 131 v~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~ 207 (340)
T PRK13536 131 VRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207 (340)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 999999766543 23344455678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.+.|+++++ .|+|||+++|+. +++.++||+|++|++|++++.|+++++.+
T Consensus 208 r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 208 RHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999976 589999999975 58999999999999999999999998865
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=379.22 Aligned_cols=210 Identities=25% Similarity=0.389 Sum_probs=188.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++.++|++||.
T Consensus 14 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~ 92 (353)
T PRK10851 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH-QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVF 92 (353)
T ss_pred CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcHH
Confidence 3579999999999999999999999999999999999987 789999999998753 22356799999999999999999
Q ss_pred HHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
||+.|+...... ...++++..++++++++.++|.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 999998653211 1234555667899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++.+.|+++.++.|.|+|+++|++ +++.+++|||++|++|+++..|+++++.
T Consensus 173 ~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 173 KELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999876789999999975 5899999999999999999999998874
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=380.61 Aligned_cols=207 Identities=22% Similarity=0.366 Sum_probs=188.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..+||++||.
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 104 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET-PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVF 104 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCHH
Confidence 4579999999999999999999999999999999999987 789999999998753 22357899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 105 eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~ 181 (375)
T PRK09452 105 ENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181 (375)
T ss_pred HHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 9999987532 2455556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++..++|+|++|++|+++..|+++++.
T Consensus 182 ~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 182 QMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999887789999999975 5799999999999999999999998874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=358.85 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=190.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC----cccccCeEEEEcCCCC-CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~----~~~~~~~i~yv~q~~~-~~~~l 114 (606)
+.+|+|+|+.+++||.++|+|+||||||||+++|+|+.+ |.+|+|.++|.+.. ...+|+++|||+|++. .+-.-
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~-p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc-CCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 589999999999999999999999999999999999998 78899999999865 3457899999999974 45566
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|.+.|+... ...++++.+++++++++.+|+.+.+++.+..|||||||||+||.+|+.+|++++|||||+|||+.
T Consensus 96 tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~ 172 (235)
T COG1122 96 TVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172 (235)
T ss_pred cHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHH
Confidence 999999999873 35677778899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.++++.++++.++.|+|+|+++|+ .+.+.+++||+++|++|+++++|+++++.+
T Consensus 173 ~~~~l~~~l~~L~~~~~~tii~~tHd-~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 173 GRRELLELLKKLKEEGGKTIIIVTHD-LELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCc-HHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 99999999999998778999999996 578999999999999999999999877654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=353.08 Aligned_cols=201 Identities=30% Similarity=0.474 Sum_probs=178.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 3579999999999999999999999999999999999987 789999999998753 22356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... ........++++++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~ 167 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLRE 167 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998875432 1234445567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|++++++.|+|||+++|++ +++.++||++++|++|++++.|
T Consensus 168 ~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 168 ELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999875689999999976 4788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=380.17 Aligned_cols=208 Identities=25% Similarity=0.420 Sum_probs=189.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..+||++||.
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~ 109 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ-PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVE 109 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCHH
Confidence 3579999999999999999999999999999999999987 789999999998753 23467899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|+.+.+ ..++.+.++++.++++.++|.+..++++++|||||||||+|||||+.+|++|+|||||++||..++.
T Consensus 110 eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~ 186 (377)
T PRK11607 110 QNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186 (377)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999987632 2455566778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++.+.|+++.++.|.|+|+++|++ +++..++||+++|++|+++..|+++++..
T Consensus 187 ~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~g~~~~~~~ 239 (377)
T PRK11607 187 RMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQIGEPEEIYE 239 (377)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence 999999999877789999999975 58999999999999999999999988753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=377.22 Aligned_cols=209 Identities=22% Similarity=0.356 Sum_probs=189.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccc----cCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLF----QTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~----~~~i~yv~q~~~~ 110 (606)
+.+.+|+|+||+|++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ..+ ++.++|++|++.+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 34679999999999999999999999999999999999998 789999999998753 223 6789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.+..... +.++++..+++.++++.+||++..+++++.|||||||||+|||||+.+|++++|||||++
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999999987642 345556677899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|+++.++.++|+|+++|+. +++.++||||++|++|+++..|+++++..
T Consensus 160 LD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 160 LDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999876689999999975 57899999999999999999999988753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=353.16 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=182.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK-PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4579999999999999999999999999999999999987 789999999987642 2345679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+|++.+....+ .....+..++++++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 91 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~ 167 (220)
T cd03265 91 WENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTR 167 (220)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 99999876532 233344556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++
T Consensus 168 ~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 168 AHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999875588999999975 478899999999999999999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-44 Score=350.13 Aligned_cols=204 Identities=30% Similarity=0.467 Sum_probs=184.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCC--CCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~--~~~~l 114 (606)
++|+|||+++.+||.++|+|+||||||||.++|+|+.+ +.+|+|.++|.+..+. .+++.+-+|+||+. +.|..
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK-PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence 59999999999999999999999999999999999998 7899999999876542 36788999999974 89999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||++.|.-+.+. .+.++ .++++.++|+.+||. ..+++++.+||||||||++|||||+.+|++|++|||||+||+
T Consensus 100 tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~ 174 (252)
T COG1124 100 TVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174 (252)
T ss_pred hHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcH
Confidence 999999888763 23333 334599999999996 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+++++|.++.++.+.|.|+++|+ ..-+..+|||++||++|++++.++++++.+
T Consensus 175 siQa~IlnlL~~l~~~~~lt~l~IsHd-l~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 175 SVQAQILNLLLELKKERGLTYLFISHD-LALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHHHHHHHHHHHHhcCceEEEEeCc-HHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 999999999999999999999999986 567999999999999999999999998864
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=377.36 Aligned_cols=207 Identities=27% Similarity=0.429 Sum_probs=186.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|+..++|++||+
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~ 93 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED-ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHH
Confidence 4579999999999999999999999999999999999987 789999999998753 12356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.|....+ ..++.+.+++++++++.++|.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 94 eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~ 170 (369)
T PRK11000 94 ENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170 (369)
T ss_pred HHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 9999987532 2344555678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++.+.|+++.++.|.|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 171 ~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 171 QMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999876689999999975 5789999999999999999999998874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=355.32 Aligned_cols=209 Identities=23% Similarity=0.360 Sum_probs=182.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+||.
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER-PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCccccceEEEecCCcccCCCCHH
Confidence 3579999999999999999999999999999999999987 7899999999987431 2356799999999999999999
Q ss_pred HHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
||+.+....... ......+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 999887543211 0012333456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++
T Consensus 173 ~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 224 (239)
T cd03296 173 KELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQVGTPDEV 224 (239)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999875689999999986 468899999999999999999998765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=348.47 Aligned_cols=201 Identities=24% Similarity=0.415 Sum_probs=178.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+||+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE-PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 3579999999999999999999999999999999999987 7899999999987531 2346799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... .....+.+++++++++.+|+.+..+++++.||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~ 167 (213)
T cd03301 91 DNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRV 167 (213)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998875432 2334445667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++++|
T Consensus 168 ~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999876689999999976 4788999999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=349.17 Aligned_cols=201 Identities=29% Similarity=0.435 Sum_probs=179.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. .++.++|++|++.+++.+||+||
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e~ 93 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLDN 93 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHHH
Confidence 579999999999999999999999999999999999987 789999999998752 46789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+....+ ........++++++++.+++.+..++++++||||||||++||+||+.+|++++|||||+|||+.++..+
T Consensus 94 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~ 170 (220)
T cd03293 94 VALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170 (220)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH
Confidence 99876432 233344456788999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc--CCeEEEecChh
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC--LGDLIYAGPTR 247 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~--~G~~v~~G~~~ 247 (606)
.+.|+++.++.++|+|+++|++ +++.++||++++|+ +|+++..++.+
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 171 QEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999998766689999999986 46889999999999 79999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-43 Score=372.75 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=186.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~ 112 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. . ..++.++|++|++.+++
T Consensus 17 ~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 17 TIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER-PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred ceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 3579999999999999999999999999999999999987 789999999998753 1 24678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+..... ..++.+.++++.++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||
T Consensus 96 ~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD 172 (343)
T PRK11153 96 SRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172 (343)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 999999999876532 23444556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|++++++.|+|+|+++|+. +++.++||++++|++|++++.|+++++.
T Consensus 173 ~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 173 PATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999876689999999975 5788999999999999999999988764
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=355.34 Aligned_cols=209 Identities=25% Similarity=0.423 Sum_probs=181.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIER 92 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEeccccCHhHHHHHHhccEEEcccCccccc
Confidence 579999999999999999999999999999999999987 789999999988742 1246689999999999999
Q ss_pred CCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 114 LTVEQTLYYAAHLSI-----GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 114 lTV~e~l~f~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+||.||+.+...... ..........+++.++++.+++.+..++.+++|||||||||+||+||+.+|++++|||||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 172 (241)
T cd03256 93 LSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPV 172 (241)
T ss_pred CcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 999999987643110 001112234567888999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 173 ASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999999876689999999986 4788899999999999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=353.57 Aligned_cols=209 Identities=29% Similarity=0.451 Sum_probs=182.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .+..++|++|++.+++.+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR-PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 4579999999999999999999999999999999999987 7899999999987531 1 245699999999999999
Q ss_pred CHHHHHHHHHHccCCCC-------CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 115 TVEQTLYYAAHLSIGPQ-------VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
||+|++.+......... ....+..+++.++++.+|+.+..++++++|||||||||+||+||+.+|++++||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999988764321110 01334456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 171 AAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQGRVIAEGTPDEVR 231 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEeecCHHHhc
Confidence 999999999999999999976 589999999976 4788999999999999999999987753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=366.25 Aligned_cols=207 Identities=28% Similarity=0.424 Sum_probs=184.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (303)
T TIGR01288 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS-PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTV 94 (303)
T ss_pred CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcH
Confidence 4579999999999999999999999999999999999987 789999999998742 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.|++.+..... ..+..+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 95 ~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 171 (303)
T TIGR01288 95 RENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171 (303)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 99998755432 233444456778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++..
T Consensus 172 ~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 172 HLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999976 589999999976 57889999999999999999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=365.05 Aligned_cols=206 Identities=22% Similarity=0.388 Sum_probs=185.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 14 ~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~-~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv 92 (301)
T TIGR03522 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP-PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYV 92 (301)
T ss_pred CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcH
Confidence 4679999999999999999999999999999999999987 789999999998753 2356789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.||+.+.+.++ +.+.++..++++++++.+||.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 93 REYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99999877643 234444556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|+++++ ++|||+++|+. +++.++|||+++|++|++++.|+.+++..
T Consensus 170 ~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 170 VEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999853 68999999975 57999999999999999999999998765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=352.17 Aligned_cols=205 Identities=26% Similarity=0.404 Sum_probs=183.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCCCCCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~~~~~~l 114 (606)
++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER-PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 79999999999999999999999999999999999987 7899999999987431 2356799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|+.||+.+....+ ........+++.++++.+++.+..++.++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 98 t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 174 (233)
T cd03258 98 TVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPE 174 (233)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHH
Confidence 9999998876532 2333444567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+.+++.
T Consensus 175 ~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 175 TTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999876689999999975 5788999999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=341.77 Aligned_cols=210 Identities=28% Similarity=0.407 Sum_probs=184.8
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~ 111 (606)
.|+..++|++||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|++++. +..|..++||||....|
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~-~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR-PRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 4555789999999999999999999999999999999999987 678999999999864 24577899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.|||+|||..++..+.. +...+..++++.+.| .|.+..+++.+.|||||||-++|||||+.+|++|+|||||.|
T Consensus 91 ~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~G 166 (237)
T COG0410 91 PRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 166 (237)
T ss_pred hhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence 999999999988764321 111222267777777 577888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|-|.-..++.+.+++++++.|.||+++ +|....+.+++||.++|.+|+++++|+++++.+
T Consensus 167 LaP~iv~~I~~~i~~l~~~~g~tIlLV-EQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~ 226 (237)
T COG0410 167 LAPKIVEEIFEAIKELRKEGGMTILLV-EQNARFALEIADRGYVLENGRIVLSGTAAELLA 226 (237)
T ss_pred cCHHHHHHHHHHHHHHHHcCCcEEEEE-eccHHHHHHhhCEEEEEeCCEEEEecCHHHHhc
Confidence 999999999999999998778888887 666778999999999999999999999998754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=340.87 Aligned_cols=213 Identities=23% Similarity=0.425 Sum_probs=191.1
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDL 110 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~ 110 (606)
++++++++++|||++|++||+++++|||||||||.+.++.|+.+ +++|+|.++|.+++.. ..|..+||+||++..
T Consensus 12 K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~-~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI 90 (243)
T COG1137 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR-PDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI 90 (243)
T ss_pred HhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe-cCCceEEECCcccccCChHHHhhcCcccccccchH
Confidence 35567899999999999999999999999999999999999998 8999999999998752 345679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|..|||+||+...+..+.. ...+.+.+++++++|++|+++++.+++...||||||||+.|||||+.+|+.++||||++|
T Consensus 91 Fr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAG 169 (243)
T COG1137 91 FRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAG 169 (243)
T ss_pred hhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccC
Confidence 9999999999988876531 223345566788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.||.+..++.++++.+++ .|..|++|-|.- -+..++|||.+++++|+++.+|+++++.+
T Consensus 170 VDPiaV~dIq~iI~~L~~-rgiGvLITDHNV-REtL~i~dRaYIi~~G~vla~G~p~ei~~ 228 (243)
T COG1137 170 VDPIAVIDIQRIIKHLKD-RGIGVLITDHNV-RETLDICDRAYIISDGKVLAEGSPEEIVN 228 (243)
T ss_pred CCchhHHHHHHHHHHHHh-CCceEEEccccH-HHHHhhhheEEEEecCeEEecCCHHHHhc
Confidence 999999999999999986 589999987754 57899999999999999999999998864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=350.73 Aligned_cols=207 Identities=25% Similarity=0.459 Sum_probs=182.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~ 113 (606)
+++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK-PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 34579999999999999999999999999999999999987 7899999999886421 1 24579999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.+....+ .....+..++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 90 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 166 (232)
T cd03218 90 LTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDP 166 (232)
T ss_pred CcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 99999998865432 123344456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .++|+|+++|++ +++.+++|++++|++|+++..|+.++..
T Consensus 167 ~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 167 IAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 999999999999976 588999999976 4789999999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=360.06 Aligned_cols=217 Identities=24% Similarity=0.414 Sum_probs=187.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~~ 113 (606)
+++|+|||+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+..
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 98 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK-PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFE 98 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCccEEEECCEECCCcCccHHHHhhceEEEecCchhcccc
Confidence 469999999999999999999999999999999999987 789999999998753 135678999999863 3345
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.||+|++.+..... +.++++..++++++++.+||. +..+++++.||||||||++||+||+.+|++++|||||+||
T Consensus 99 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gL 175 (287)
T PRK13637 99 ETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGL 175 (287)
T ss_pred ccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCC
Confidence 79999999876432 345556667889999999997 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCP 261 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~ 261 (606)
|+.++.++.+.|++++++.|+|||+++|+. +++.++||||++|++|++++.|+++++.+ .....|+..|
T Consensus 176 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 176 DPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhCHHHHHHcCCCCC
Confidence 999999999999999876689999999975 57888999999999999999999988753 2334455544
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=352.08 Aligned_cols=206 Identities=27% Similarity=0.459 Sum_probs=183.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE-PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 569999999999999999999999999999999999987 789999999988643 2346689999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+||+.+..... .....+..+++.++++.+++.+ ..++++++|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 93 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 169 (242)
T cd03295 93 EENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPI 169 (242)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 99998875432 2234445567889999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|++++.|+++++.
T Consensus 170 ~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 170 TRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999875589999999986 4688999999999999999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=346.75 Aligned_cols=216 Identities=28% Similarity=0.453 Sum_probs=192.0
Q ss_pred eeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcC
Q psy10223 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNH 106 (606)
Q Consensus 31 ~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q 106 (606)
.|.||. ..+++|||+++++||+++|+||||||||||+|+|+|.++ |++|+|.++|++++. +..|..++-.+|
T Consensus 11 ~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~-P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 11 SKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK-PSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred eeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc-CCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 445544 689999999999999999999999999999999999998 899999999999864 224667899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccC--------CCC-CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSI--------GPQ-VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~--------~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
...+|++|||.||+..++..+. +.. ...++..+++.++|+.+||.+.+|++.++||+|||||+.|||||++
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 9999999999999999865331 111 1345567789999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|++|+||||.+||.+..+.++.+.|+++.++.|.|++++-|+ ..-++++||||+||+.|+++.+|+++++.+
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHd-M~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHD-MKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEec-cHHHhhhccEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999999999999999998778999998774 678999999999999999999999999864
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=348.29 Aligned_cols=203 Identities=27% Similarity=0.440 Sum_probs=180.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 93 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVR 93 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHH
Confidence 579999999999999999999999999999999999987 789999999998743 23566799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... ..+..+..+++.++++.++|.+..++.+++|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 94 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 170 (220)
T cd03263 94 EHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRR 170 (220)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHH
Confidence 9998876532 2233344567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 171 ~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 171 AIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999864 48999999986 468889999999999999999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=339.58 Aligned_cols=206 Identities=26% Similarity=0.437 Sum_probs=181.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++++|+|||+.|++++++|+|||||||||||||++...... ..+|+|.++|+++.. ..+|+++|+|+|.+
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 357899999999999999999999999999999999876431 246999999999743 24799999999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
..|| +|++||+.++.++... ..++..+.+++.|+...|.+ .+++...+||||||||++|||||+.+|+||+|
T Consensus 98 nPFp-~SIydNVayG~r~~g~---~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGI---KDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred CCCC-chHHHHHHHhHHhhcc---chHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 9999 8999999999987532 23667788999999888853 45667889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||||+|||.++.++-+++.++++ .-|||+++|. .+.+.+..|+..++..|++|++|+++++.
T Consensus 174 DEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHn-mqQAaRvSD~taFf~~G~LvE~g~T~~iF 236 (253)
T COG1117 174 DEPTSALDPISTLKIEELITELKK--KYTIVIVTHN-MQQAARVSDYTAFFYLGELVEFGPTDKIF 236 (253)
T ss_pred cCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCC-HHHHHHHhHhhhhhcccEEEEEcCHHhhh
Confidence 999999999999999999999974 5799998886 56899999999999999999999999873
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=345.29 Aligned_cols=199 Identities=29% Similarity=0.498 Sum_probs=177.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 4579999999999999999999999999999999999987 789999999988753 35678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ .....+..+++.++++.+++.+..++++++|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 90 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~ 166 (210)
T cd03269 90 QLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVEL 166 (210)
T ss_pred HHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 998876532 22334455678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+.+.|+++++ .++|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 167 ~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 167 LKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 9999999876 478999999976 4688899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=354.16 Aligned_cols=209 Identities=25% Similarity=0.417 Sum_probs=180.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE-PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 3579999999999999999999999999999999999987 789999999988642 124678999999999999
Q ss_pred CCCHHHHHHHHHHccC-----CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 113 SLTVEQTLYYAAHLSI-----GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+||+||+.++..... .......+..+++.++++.+++.+..++.++.|||||||||+||+||+.+|++++||||
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999987532100 00111223456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 9999999999999999999765688999999976 467899999999999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=357.90 Aligned_cols=211 Identities=26% Similarity=0.401 Sum_probs=185.5
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc----ccCeEEEEcCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL----FQTTCGYVNHR 107 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~ 107 (606)
.+++.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. .. .++.++|++|+
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~ 110 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE-PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS 110 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence 34556789999999999999999999999999999999999987 789999999988642 11 23579999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+++.+||.||+.+..... .....+..+++.++++.++|.+..++.+++|||||||||+||+||+.+|+++|||||
T Consensus 111 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 111 FALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred cccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999999999999876432 123344456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999765689999999975 4788999999999999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.44 Aligned_cols=205 Identities=43% Similarity=0.719 Sum_probs=178.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.....++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 36799999999999999999999999999999999999762 5789999999987654567889999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHH-HHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQ-VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+||+.++................++++ .++.+++++..++.++.|||||||||+||++|+.+|++++|||||+|||+.+
T Consensus 99 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~ 178 (226)
T cd03234 99 RETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFT 178 (226)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHH
Confidence 999998765332211122223334555 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|+++++ .+.|+|+++|++.+++.++||++++|++|++++.|
T Consensus 179 ~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 179 ALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999876 48899999998756799999999999999998865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=346.74 Aligned_cols=195 Identities=27% Similarity=0.430 Sum_probs=173.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. . .+++.++|++|++.+++.
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK-PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSD 94 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccc
Confidence 469999999999999999999999999999999999987 789999999998642 1 245689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+....+ .....+..+++.++++.+|+.+..++.+++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 95 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 171 (216)
T TIGR00960 95 RTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDP 171 (216)
T ss_pred ccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 99999999876532 223344556789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++
T Consensus 172 ~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 172 ELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999975 488999999976 478889999999999974
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-43 Score=346.68 Aligned_cols=195 Identities=29% Similarity=0.467 Sum_probs=172.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~~~~i~yv~q~~~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLP 95 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC-CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCC
Confidence 579999999999999999999999999999999999987 7899999999887431 12467999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.+....+ .....+.+++++++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||+|||
T Consensus 96 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD 172 (218)
T cd03255 96 DLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172 (218)
T ss_pred CCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCC
Confidence 999999999876532 22333445678899999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
+.++..+.+.|++++++.|+|+|+++|++. ++. .||++++|++|++
T Consensus 173 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 173 SETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEEeeCCcC
Confidence 999999999999997656899999999864 454 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=363.69 Aligned_cols=208 Identities=21% Similarity=0.329 Sum_probs=185.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~ 111 (606)
..+|+|||++|++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++||+|++ .++
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK-ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 579999999999999999999999999999999999987 789999999998753 12467899999997 589
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||.|++.+...... ...++.+.+++++++++.+++. +..++++++|||||||||+||+||+.+|+++++||||+|
T Consensus 113 p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 191 (331)
T PRK15079 113 PRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191 (331)
T ss_pred CCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999999998765321 1245556677889999999994 578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++.++++.|+++.++.|.|+|+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 192 LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AVVKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999876689999999975 5788899999999999999999988775
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=349.48 Aligned_cols=207 Identities=26% Similarity=0.444 Sum_probs=182.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE-ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 4579999999999999999999999999999999999987 789999999998753 2346689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+..... ......+..+++.++++.+|+++..+++++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 92 ~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 169 (240)
T PRK09493 92 LTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169 (240)
T ss_pred CcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 99999998864211 1233444556788999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 170 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 170 ELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFIDKGRIAEDGDPQVLI 224 (240)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 999999999999875 489999999986 4688899999999999999999987764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=357.18 Aligned_cols=214 Identities=21% Similarity=0.361 Sum_probs=186.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhccccc
Confidence 459999999999999999999999999999999999987 789999999998753 235678999999974 677889
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|+||+.+..... +.++++..+++.++++.+||.+..++.++.|||||||||+||+||+.+|++|+|||||+|||+.+
T Consensus 99 v~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~ 175 (279)
T PRK13650 99 VEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEG 175 (279)
T ss_pred HHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 999999875422 34555566788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFP 259 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~ 259 (606)
+..+.+.|++++++.|+|+|+++|+.. ++ ..||++++|++|+++..|++++..+ .++..|++
T Consensus 176 ~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 240 (279)
T PRK13650 176 RLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLD 240 (279)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHHHHcChHHHHHcCCC
Confidence 999999999998766899999999864 55 5899999999999999999987653 23444554
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=358.90 Aligned_cols=216 Identities=25% Similarity=0.397 Sum_probs=185.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+++|+|||+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++ .+
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ-PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL 98 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh
Confidence 469999999999999999999999999999999999987 789999999998741 23567899999986 34
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+ ..||.||+.|+.... ..+..+..++++++++.+||. +..+++++.|||||||||+||++|+.+|++++|||||+
T Consensus 99 ~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~ 174 (290)
T PRK13634 99 F-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTA 174 (290)
T ss_pred h-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 5 479999999876422 234555567789999999997 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCP 261 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~ 261 (606)
|||+.++.++.+.|++++++.|.|||+++|+. +++.++||||++|++|++++.|+++++.+ .+...|..+|
T Consensus 175 ~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 175 GLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 99999999999999999876689999999975 57889999999999999999999887642 3344455443
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=348.24 Aligned_cols=203 Identities=28% Similarity=0.460 Sum_probs=176.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-----CCCCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-----SGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-----~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+. + +.+|+|.++|.++.. ...++.++|++|++
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA-PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC-CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 457999999999999999999999999999999999998 5 788999999998642 23467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc--CCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN--ISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~--v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
.++ .+||+||+.++...+. .....+.++++.++++.+|+.+..++. +++|||||||||+||+||+.+|++++|||
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 167 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167 (227)
T ss_pred hhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 888 7999999988765321 112223456788999999999887777 59999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
||+|||+.++..+.+.|++++++ +|+|+++|++ +++.++||++++|++|++++.|++++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 168 PTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCEEEEEeCCEEEEecCccc
Confidence 99999999999999999999763 8999999976 47888999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=344.73 Aligned_cols=198 Identities=27% Similarity=0.441 Sum_probs=177.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++|+|+|+++++||+++|+|+||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||.|
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE-PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHH
Confidence 69999999999999999999999999999999999987 789999999998753 235678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ .....+..+++.++++.+|+.+..++.++.||||||||++||+||+.+|++++|||||+|||+.++..
T Consensus 98 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 174 (218)
T cd03266 98 NLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174 (218)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHH
Confidence 998865432 23344556778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+.+.|+++++ .|+|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 175 l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 175 LREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEEeecC
Confidence 9999999975 488999999976 4788999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=344.96 Aligned_cols=204 Identities=29% Similarity=0.422 Sum_probs=178.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4579999999999999999999999999999999999987 7899999999887431 1 356799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|++||+.+...... ..+..+++.++++.+ ++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 165 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAP 165 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 99999988764321 122345677888888 588888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 166 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 166 KIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 999999999999976 588999999975 5788999999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=354.44 Aligned_cols=208 Identities=22% Similarity=0.372 Sum_probs=182.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~~~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|+..+++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 97 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA-PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFT 97 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccChhhHHHHhhcEEEEecccccCC
Confidence 4579999999999999999999999999999999999987 7899999999887421 23567999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+..... ......+..+++.++++.+|+.+..+++++.|||||||||+||++|+.+|++++|||||+|||
T Consensus 98 ~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 175 (269)
T PRK11831 98 DMNVFDNVAYPLREH--TQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175 (269)
T ss_pred CCCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 999999998865321 112334445678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|++++++.|+|+|+++|+. +++.++||++++|++|++++.|+++++.
T Consensus 176 ~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 176 PITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999766689999999975 5788999999999999999999987653
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=354.16 Aligned_cols=215 Identities=21% Similarity=0.338 Sum_probs=184.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL-PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 469999999999999999999999999999999999987 789999999998753 234667999999963 455689
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.|..... ...+.+.++++.++++.+||.+..++++.+|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 97 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~ 173 (274)
T PRK13647 97 VWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173 (274)
T ss_pred HHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHH
Confidence 999999875421 23444555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH--HHHHHcCCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML--EYFRSIGFPC 260 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~--~~f~~~G~~~ 260 (606)
+.++.+.|++++++ |+|+|+++|+. +++.++|||+++|++|++++.|+++++. +.++..|..+
T Consensus 174 ~~~l~~~l~~~~~~-g~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 238 (274)
T PRK13647 174 QETLMEILDRLHNQ-GKTVIVATHDV-DLAAEWADQVIVLKEGRVLAEGDKSLLTDEDIVEQAGLRL 238 (274)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHhcCHHHHHHcCCCC
Confidence 99999999999864 89999999975 5688999999999999999999986542 2333445443
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=355.09 Aligned_cols=207 Identities=25% Similarity=0.405 Sum_probs=182.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++. .+..
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 469999999999999999999999999999999999987 789999999998731 235678999999974 3345
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.||+||+.+..... +.+..+..++++++++.+||.+..+++++.||||||||++||+||+.+|++++|||||+|||+
T Consensus 98 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~ 174 (283)
T PRK13636 98 ASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDP 174 (283)
T ss_pred ccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 79999998865421 234555567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++..+.+.|++++++.|+|||+++|+. +++.++|||+++|++|++++.|++++...
T Consensus 175 ~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 175 MGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999876689999999975 46788999999999999999999988754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=345.58 Aligned_cols=207 Identities=33% Similarity=0.470 Sum_probs=181.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV-AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 4579999999999999999999999999999999999987 789999999987643 1233579999999988899999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+....+ .....+..+++.++++.+|+.+..++.++.||||||||++||+||+.+|++++|||||+|||+.++
T Consensus 92 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 168 (236)
T TIGR03864 92 RQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168 (236)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 99998765432 233344456788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|++++++.|+|+|+++|++. ++. .+|++++|++|+++..|+++++.+
T Consensus 169 ~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 169 AAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999998656899999999864 554 599999999999999999877653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=372.24 Aligned_cols=210 Identities=21% Similarity=0.340 Sum_probs=184.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++.+|+|+||++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. +..++.++|++|++.+++.+
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~-p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT-PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 34679999999999999999999999999999999999988 789999999998753 34577899999999999999
Q ss_pred CHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||+|++.++....... .....+.+++++++++.+|+.+..++++++|||||||||+|||||+++|++|+|||||+|||+
T Consensus 93 tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~ 172 (402)
T PRK09536 93 DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172 (402)
T ss_pred CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 9999998864311000 011234456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++.+++++|+++++ .|+|+|+++|+. +++.++|||+++|++|+++..|+++++.
T Consensus 173 ~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~iv~~G~~~ev~ 227 (402)
T PRK09536 173 NHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRVRAAGPPADVL 227 (402)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999986 588999999975 6889999999999999999999998753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=350.26 Aligned_cols=207 Identities=26% Similarity=0.442 Sum_probs=181.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----------ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----------QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~ 107 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ-PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 3579999999999999999999999999999999999987 788999999988642 1245689999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+++.+||.||+.++.... ......+..+++.++++.+|+.+..++.+++|||||||||+||++|+.+|++++||||
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEP 171 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIV--KGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEP 171 (250)
T ss_pred cccCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 99999999999998754311 1223344456788999999999888999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 172 TSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999976 488999999975 4788999999999999999999987753
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=355.99 Aligned_cols=218 Identities=24% Similarity=0.363 Sum_probs=188.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 19 ~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 19 SRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ-PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 359999999999999999999999999999999999987 789999999998741 13567899999986 45
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||.|++.|+.... +.++.+.++++.++++.++|. +..++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 98 ~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~ 173 (288)
T PRK13643 98 FE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTA 173 (288)
T ss_pred cc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 55 69999999876532 244556667889999999996 57899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCCCCC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCPELE 264 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~~~~ 264 (606)
|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||||++|++|++++.|+++++.+ .++..|+.+|...
T Consensus 174 gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 174 GLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred CCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHH
Confidence 9999999999999999976 489999999975 57889999999999999999999988743 4456677766543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=344.58 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=176.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cc-cCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LF-QTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~-~~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++... .. ++.++|++|++.+++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT-PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLP 100 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCC
Confidence 579999999999999999999999999999999999987 7899999999987531 12 257999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.+..... .....+.++++.++++.+|+.+..++.+++|||||||||+||++|+.+|++++|||||+|||
T Consensus 101 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD 177 (233)
T PRK11629 101 DFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLD 177 (233)
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999999999876432 22334455678999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
+.++..+.+.|++++++.|+|+|+++|++. ++.. +|++++|++|+++..|+.
T Consensus 178 ~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 178 ARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEEEECCEEEEEecc
Confidence 999999999999997656899999999864 4554 689999999999988764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=343.26 Aligned_cols=192 Identities=26% Similarity=0.422 Sum_probs=169.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC-CCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD-LIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~-~~~~lTV~e 118 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.....++.++|++|++. .+..+||.|
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK-ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence 579999999999999999999999999999999999987 789999999998754445678999999974 345679999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+..... .. ..++++++++.+++.+..++++++||||||||++||+||+.+|++++|||||+|||+.++..
T Consensus 92 ~l~~~~~~~-----~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 164 (205)
T cd03226 92 ELLLGLKEL-----DA--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164 (205)
T ss_pred HHhhhhhhc-----Cc--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHH
Confidence 998865421 11 12567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v 241 (606)
+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++
T Consensus 165 l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 165 VGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 9999999975 488999999976 4688899999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=341.50 Aligned_cols=196 Identities=29% Similarity=0.443 Sum_probs=174.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||.
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK-PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 4579999999999999999999999999999999999987 789999999987643 23456799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... .. ..++++++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 91 e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~ 163 (208)
T cd03268 91 ENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIK 163 (208)
T ss_pred HHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence 9998876432 11 1356788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|+++++ .++|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 164 ~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 164 ELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999876 589999999976 4788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=348.87 Aligned_cols=210 Identities=23% Similarity=0.347 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++... . .+..++|++|++.+++.+
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM 95 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC
Confidence 3579999999999999999999999999999999999987 7899999999987431 1 245689999999999999
Q ss_pred CHHHHHHHHHHccCC----------CCC--CHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 115 TVEQTLYYAAHLSIG----------PQV--SRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 115 TV~e~l~f~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
||.||+.++...... ... ...+..+++.++++.+|+.+..++++++|||||||||+||+||+.+|+++
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 175 (255)
T PRK11300 96 TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEIL 175 (255)
T ss_pred cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999986431100 000 11123456788999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEecCCHHHHh
Confidence 999999999999999999999999775589999999975 5788999999999999999999987753
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=339.63 Aligned_cols=212 Identities=25% Similarity=0.456 Sum_probs=198.7
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+++.+++|+||+|+||||++++|||||||||.+|+|.|++. +++|+|.++|.+++. ..+.+|||+|++..++|.+
T Consensus 10 K~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle-~~~G~I~~~g~~~~~-~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQ-EIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred hccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC-ccCceEEEcCcchhh-hhhhhcccChhhhccCccC
Confidence 34456789999999999999999999999999999999999998 789999999999874 4567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|.|.|.++++ ++++++.++++..+|+++++.....+++.+||.|++|++.+..+++++|++++||||+|||||.
T Consensus 88 tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPV 164 (300)
T COG4152 88 TVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPV 164 (300)
T ss_pred cHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChh
Confidence 9999999999975 6788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
+...+.+.+.++++ .|.|||+++|. .+.+.++||++++|++|+.|.+|+.++++.-|
T Consensus 165 N~elLk~~I~~lk~-~GatIifSsH~-Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 165 NVELLKDAIFELKE-EGATIIFSSHR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSF 221 (300)
T ss_pred hHHHHHHHHHHHHh-cCCEEEEecch-HHHHHHHhhhhheecCCceEEeccHHHHHHhc
Confidence 99999999999976 59999999986 67899999999999999999999999998754
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=350.74 Aligned_cols=209 Identities=22% Similarity=0.374 Sum_probs=180.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+||++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ..+++.++|++|+..+++.+||
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 102 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP-PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTV 102 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccH
Confidence 579999999999999999999999999999999999987 789999999987642 2356689999999888899999
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.||+.+....... ....+....+++.++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 9999875321100 001112334568899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+..+.+.|++++++.|.|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 183 ~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 183 QVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 99999999999865689999999975 4788999999999999999999887653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=347.23 Aligned_cols=208 Identities=23% Similarity=0.368 Sum_probs=182.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccCeEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQTTCG 102 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~~i~ 102 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP-IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 3579999999999999999999999999999999999987 789999999987632 12467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 103 yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
|++|++.+++.+||.||+.++.... ......+..+++.++++.+|+.+..++.++.||||||||++||++|+.+|+++
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVM 168 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999998864311 12334445567889999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|++++++.|.|+|+++|++ +++.+++|++++|++|++++.|+.++..
T Consensus 169 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 169 LFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999875689999999986 4688999999999999999999987653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=347.36 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=178.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. .+..++|++|++.+++.+||.|
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP-YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 3579999999999999999999999999999999999987 789999999998753 2346899999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ .....+..+++.++++.+|+.+..++++..|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 90 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~ 166 (255)
T PRK11248 90 NVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ 166 (255)
T ss_pred HHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHH
Confidence 998865432 23344455678999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc--CCeEEEecChh
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC--LGDLIYAGPTR 247 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~--~G~~v~~G~~~ 247 (606)
+.+.|++++++.|+|+|+++|++ +++.++||++++|+ +|+++..++.+
T Consensus 167 l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 167 MQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999998665689999999976 47889999999998 59999887754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=345.20 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=182.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP-RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL 93 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccC
Confidence 3579999999999999999999999999999999999987 789999999998743 12456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.+..... ......+.++++.++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 94 tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 94 SVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred cHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 9999998765322 11233345567889999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 172 ~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 225 (241)
T PRK10895 172 SVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQGHLIAHGTPTEIL 225 (241)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeCCeEEeeCCHHHHh
Confidence 99999999999875 588999999975 5788999999999999999999987753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=366.89 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=185.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc----ccCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL----FQTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~~~ 110 (606)
+...+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. .. .++.++|++|++.+
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 44568999999999999999999999999999999999987 789999999998753 11 24579999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.+....+ ..+..+..+++.++++.+||.+..++++++|||||||||+||+||+.+|++|||||||+|
T Consensus 118 ~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 118 MPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 99999999999987543 234445567789999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++.++.+.|+++.++.|+|+|+++|+. +++.+++|++++|++|+++..|+++++.
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999766689999999975 5788999999999999999999988764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.46 Aligned_cols=205 Identities=25% Similarity=0.436 Sum_probs=179.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-----eeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-----RGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-----~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ +. +|+|.++|.++.. ...++.++|++|++
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 91 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP 91 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence 3569999999999999999999999999999999999987 55 8999999998742 23467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++ +||.||+.+....+. ..+..+..+++.++++.+|+. +..++.+++|||||||||+||+||+.+|++++|
T Consensus 92 ~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 168 (247)
T TIGR00972 92 NPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLL 168 (247)
T ss_pred ccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9998 999999998765321 123444556788999999998 778999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 169 DEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999875 38999999976 4788999999999999999999987763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=339.31 Aligned_cols=194 Identities=28% Similarity=0.399 Sum_probs=172.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++... .+++.++|++|++.+++.
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 579999999999999999999999999999999999987 7899999999987421 245689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+....+ .......+++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~ 170 (214)
T TIGR02673 94 RTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDP 170 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCH
Confidence 99999999876532 123344456788999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+
T Consensus 171 ~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 171 DLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999875 488999999986 57888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=346.74 Aligned_cols=207 Identities=23% Similarity=0.376 Sum_probs=181.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccCeEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQTTCG 102 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~~i~ 102 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 4579999999999999999999999999999999999987 788999999987631 13467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-cccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 103 YVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-RRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 103 yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
|++|++.+++.+||+||+.++.... ......+.++++.++++.+|+.+.. ++.+++||||||||++||+||+.+|++
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQV--LGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEV 173 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998754211 1233445567788999999998764 889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++|||||+|||+.++..+.+.|+++++ .|+|+|+++|++ +++.++|||+++|++|++++.|+.++..
T Consensus 174 lllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 174 LLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999999976 489999999975 4788899999999999999999987653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=353.62 Aligned_cols=206 Identities=21% Similarity=0.379 Sum_probs=181.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+++|+|||++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 98 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK-PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL 98 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc
Confidence 469999999999999999999999999999999999987 789999999998742 13567899999986 45
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||.||+.+..... ..+..+..++++++++.+||. +..++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 99 ~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~ 174 (286)
T PRK13646 99 FE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTA 174 (286)
T ss_pred ch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 65 59999999876421 244555667889999999997 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++++.|+|||+++|+. +++.++|||+++|++|++++.|+++++.+
T Consensus 175 ~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 175 GLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999876689999999975 47889999999999999999999887643
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=339.08 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=173.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL-PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPD 92 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccC
Confidence 569999999999999999999999999999999999987 789999999998742 1245689999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|++||+.+....+ ....++..++++++++.+|+.+..++++++||||||||++||+||+.+|++++|||||+|||+
T Consensus 93 ~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 169 (214)
T cd03292 93 RNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169 (214)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 99999999876532 123444556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++
T Consensus 170 ~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 170 DTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999875 488999999986 477889999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=347.58 Aligned_cols=207 Identities=29% Similarity=0.452 Sum_probs=180.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS-PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFT 92 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCCC
Confidence 4579999999999999999999999999999999999987 789999999987642 234567999999998888899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV------KDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~------~~p~llllDEPTs 189 (606)
|+||+.+..... ........++++++++.+++.+..++.++.|||||||||+||+||+ .+|++++|||||+
T Consensus 93 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~ 169 (258)
T PRK13548 93 VEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTS 169 (258)
T ss_pred HHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcc
Confidence 999998865321 1122334456889999999999999999999999999999999999 5999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|.|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 170 ALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999744688999999975 4788899999999999999999887654
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.80 Aligned_cols=200 Identities=26% Similarity=0.386 Sum_probs=171.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLIP 112 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~~ 112 (606)
.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+++
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK-PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP 97 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence 69999999999999999999999999999999999987 789999999998743 23567899999998 4677
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHH-HHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNAR-IRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+||+||+.+....... ....+..++ +.++++.+++. +..++.++.|||||||||+||++|+.+|++++|||||+|
T Consensus 98 ~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 175 (228)
T cd03257 98 RMTIGEQIAEPLRIHGK--LSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSA 175 (228)
T ss_pred cCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 89999999887543211 111122222 35888999995 678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 176 LDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999875588999999986 4678899999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=350.58 Aligned_cols=215 Identities=24% Similarity=0.361 Sum_probs=186.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~t 98 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT 98 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccccc
Confidence 469999999999999999999999999999999999988 789999999998753 234668999999974 677789
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... ....++..++++++++.+||.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.+
T Consensus 99 v~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~ 175 (279)
T PRK13635 99 VQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRG 175 (279)
T ss_pred HHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998876432 23445556778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPC 260 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~ 260 (606)
+..+.+.|++++++.|+|||+++|++. ++. .||++++|++|++++.|+++++.. .++..|..+
T Consensus 176 ~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 241 (279)
T PRK13635 176 RREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNKGEILEEGTPEEIFKSGHMLQEIGLDV 241 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHHHhcCHHHHHHcCCCC
Confidence 999999999998766899999999864 555 599999999999999999887653 344445443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=338.90 Aligned_cols=196 Identities=28% Similarity=0.438 Sum_probs=171.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c---cc-CeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L---FQ-TTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~---~~-~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... . ++ +.++|++|++.+++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 96 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN-PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLP 96 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCC
Confidence 579999999999999999999999999999999999987 7899999999987431 1 23 57999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.+....+ .....+..+++.++++.+|+.+..++.++.|||||||||+||++|+.+|++++|||||+|||
T Consensus 97 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 173 (221)
T TIGR02211 97 DFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173 (221)
T ss_pred CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCC
Confidence 999999998865432 12333445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI 241 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v 241 (606)
+.++..+.+.|++++++.++|+|+++|++. .+ +.+|++++|++|+++
T Consensus 174 ~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 174 NNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 999999999999998766899999999864 45 458999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=343.40 Aligned_cols=204 Identities=24% Similarity=0.430 Sum_probs=178.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR-ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 4579999999999999999999999999999999999987 7899999999987431 2456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.||+.++.... ...+..++++++++.+ ++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+
T Consensus 96 tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~ 170 (237)
T PRK11614 96 TVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAP 170 (237)
T ss_pred cHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCH
Confidence 9999998864321 1222344567788888 588788889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 171 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (237)
T PRK11614 171 IIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLENGHVVLEDTGDALL 225 (237)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEeCCEEEeeCCHHHHh
Confidence 999999999999876 489999999975 4789999999999999999999988764
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=338.40 Aligned_cols=198 Identities=31% Similarity=0.523 Sum_probs=174.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++++|+|+|+++++| +++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP-PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 357999999999999 999999999999999999999987 789999999987643 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.||+.+....+ ...+.+..++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 90 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 166 (211)
T cd03264 90 REFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEER 166 (211)
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99999876532 123334456788999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
..+.+.|+++++ +.|+|+++|++ +++.+++||+++|++|+++..|
T Consensus 167 ~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 167 IRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999974 48999999875 4678899999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=338.12 Aligned_cols=194 Identities=27% Similarity=0.432 Sum_probs=170.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++.+|
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG-PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence 579999999999999999999999999999999999987 789999999988742 234678999999975 467899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... .....+..++++++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 93 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 169 (211)
T cd03225 93 VEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAG 169 (211)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 999998865422 12333445678899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+..+.+.|++++++ |+|+|+++|++ +++.++||++++|++|+
T Consensus 170 ~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 170 RRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 99999999999864 89999999975 57888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=349.75 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=182.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+...|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 459999999999999999999999999999999999987 789999999998743 235678999999974 344679
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... ........++++++++.+++.+..++.++.||||||||++||+||+.+|++++|||||+|||+.+
T Consensus 96 v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~ 172 (277)
T PRK13652 96 VEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQG 172 (277)
T ss_pred HHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998765421 23444555678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+..+.+.|++++++.|+|+|+++|++ +++.+.|||+++|++|++++.|++++..+
T Consensus 173 ~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 173 VKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 99999999999876689999999986 47889999999999999999999988753
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=353.38 Aligned_cols=204 Identities=25% Similarity=0.368 Sum_probs=179.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC---------------------------
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--------------------------- 93 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--------------------------- 93 (606)
.+|+|+|++|++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+..
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 59999999999999999999999999999999999987 78899999987541
Q ss_pred cccccCeEEEEcCCC-CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHH
Q psy10223 94 PQLFQTTCGYVNHRT-DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVI 171 (606)
Q Consensus 94 ~~~~~~~i~yv~q~~-~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsI 171 (606)
....++.+||++|++ ..+...||+|++.|+.... ..++++..+++.++++.+||. +..++++..|||||||||+|
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrval 176 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176 (305)
T ss_pred HHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 123467899999985 2344579999999876532 345556677899999999996 68899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||+++|+. +++.++||||++|++|++++.|+++++.
T Consensus 177 A~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 177 AGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999975 589999999974 5788999999999999999999998874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=356.08 Aligned_cols=208 Identities=21% Similarity=0.315 Sum_probs=185.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~ 111 (606)
..+|+|||++|++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|.++.. ..+|+.++|++|++ .+.
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET-PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 579999999999999999999999999999999999987 788999999998743 13567899999997 589
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||.+++....... ....+.+.++++.++++.+||. +..++++++|||||||||+||+||+.+|++|++||||+|
T Consensus 107 p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~ 184 (327)
T PRK11308 107 PRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184 (327)
T ss_pred CccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 9999999998766532 1234555667899999999996 478999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||..++.+++++|+++.++.|.|+|+++|+. ..+.++||+|++|++|++++.|+++++.+
T Consensus 185 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~adrv~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 185 LDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVEHIADEVMVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999877789999999975 57888999999999999999999988753
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=347.34 Aligned_cols=196 Identities=23% Similarity=0.353 Sum_probs=175.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. ..++.++|++|++.+++.+||+|
T Consensus 24 ~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET-PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHH
Confidence 4579999999999999999999999999999999999987 78999999998763 35678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+... . ...+++.++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.++..
T Consensus 101 nl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~ 171 (257)
T PRK11247 101 NVGLGLK-----G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIE 171 (257)
T ss_pred HHHhccc-----c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 9987531 0 123567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChh
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~ 247 (606)
+.+.|++++++.++|+|+++|++ +++.++||++++|++|++++.|+.+
T Consensus 172 l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 172 MQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecccc
Confidence 99999998766689999999976 4678899999999999999887754
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=337.77 Aligned_cols=197 Identities=26% Similarity=0.424 Sum_probs=173.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE-PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 3579999999999999999999999999999999999987 789999999998732 2346789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|+.||+.+..... ......+..+++.++++.+|+.+..++.+++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 91 ~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~ 168 (213)
T cd03262 91 LTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168 (213)
T ss_pred CcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 99999998864311 1233344556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++
T Consensus 169 ~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 169 ELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999976 588999999975 578899999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=342.30 Aligned_cols=208 Identities=25% Similarity=0.377 Sum_probs=180.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR-PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 3579999999999999999999999999999999999987 7899999999876431 1345799999999999999
Q ss_pred CHHHHHHHHHHccCC--C---CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 115 TVEQTLYYAAHLSIG--P---QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 115 TV~e~l~f~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
||+||+.+....... . ...+++.+++++++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||+
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~ 172 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA 172 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 999999886532100 0 01223345678899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 173 ~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 173 GMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQGSVLAEGSLDQVQ 230 (242)
T ss_pred CCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEECCeEEeeCCHHHHh
Confidence 9999999999999999864 58999999975 5788999999999999999999877653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=347.71 Aligned_cols=210 Identities=18% Similarity=0.316 Sum_probs=181.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 97 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT-PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDIT 97 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCc
Confidence 4579999999999999999999999999999999999987 788999999998642 234567999999999999999
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|.|++.+......+ .....+...+++.++++.+++.+..++.++.||||||||++||+||+.+|++++|||||+|||+.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~ 177 (265)
T PRK10253 98 VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177 (265)
T ss_pred HHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 99999875311100 00111233456889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 178 ~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (265)
T PRK10253 178 HQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGKIVAQGAPKEIV 232 (265)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999865588999999976 4789999999999999999999987764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=362.65 Aligned_cols=210 Identities=22% Similarity=0.371 Sum_probs=187.1
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE----eCCc---c---cc-cCeEEEE
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT----PMSP---Q---LF-QTTCGYV 104 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~----~~~~---~---~~-~~~i~yv 104 (606)
+++...+|+|+||++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|. ++.. . .. ++.++|+
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP-VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 3456789999999999999999999999999999999999987 78999999996 3321 1 12 3579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+|++.++|++||.||+.++...+ +.++.+.++++.++++.+||.+..++++.+|||||||||+|||||+.+|+++||
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999986532 244555667889999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++.++.+.|+++.++.++|+|+++|+. +++.+++||+++|++|+++..|+++++.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 189 DEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999876689999999975 5789999999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=342.79 Aligned_cols=205 Identities=29% Similarity=0.409 Sum_probs=179.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---------ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---------~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 3579999999999999999999999999999999999987 789999999997620 124668999999999
Q ss_pred CCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 110 LIPSLTVEQTLYYA-AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 110 ~~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+++.+||.||+.+. .... .....+..+++.++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||
T Consensus 93 ~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt 169 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred ccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999999999753 2221 1233444567889999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++..+.+.|+++++ .|+|+|+++|++ +++.+++|++++|++|++++.|++++.
T Consensus 170 ~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 170 AALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred CcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999875 589999999986 467889999999999999999987754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=346.48 Aligned_cols=216 Identities=19% Similarity=0.332 Sum_probs=185.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. +++..|
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 100 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK-VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSI 100 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhccccc
Confidence 459999999999999999999999999999999999987 789999999998743 235678999999975 788889
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+.+|+.+..... ....++..++++++++.+++.+..+++++.||||||||++||+||+.+|++++|||||+|||+.+
T Consensus 101 v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~ 177 (269)
T PRK13648 101 VKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDA 177 (269)
T ss_pred HHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998875422 23344455678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHHHcCCCCC
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFRSIGFPCP 261 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~~~G~~~~ 261 (606)
+..+.+.|++++++.|+|+|+++|++. ++.. +|++++|++|++++.|++++..+ .+...|.++|
T Consensus 178 ~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 178 RQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKGTVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECCEEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 999999999997656899999999874 5654 99999999999999999887643 3334454443
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=351.34 Aligned_cols=204 Identities=25% Similarity=0.380 Sum_probs=179.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 98 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK-PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL 98 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh
Confidence 469999999999999999999999999999999999988 789999999998642 23456899999996 34
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+ .+||.||+.+..... ....++..++++++++.+||+ +..++++++|||||||||+||+||+.+|++|+|||||+
T Consensus 99 ~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~ 174 (287)
T PRK13641 99 F-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAA 174 (287)
T ss_pred c-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 4 589999998865432 234455566789999999997 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ .|.|+|+++|+. +++.++||++++|++|+++..|+++++.
T Consensus 175 gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 175 GLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADDVLVLEHGKLIKHASPKEIF 233 (287)
T ss_pred CCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999975 589999999975 5788999999999999999999988764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=342.97 Aligned_cols=208 Identities=27% Similarity=0.389 Sum_probs=179.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc---ccccCeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~ 111 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 35799999999999999999999999999999999999863 368999999998742 23567899999999889
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+||.||+.+....... .....+..+++.++++.+++. +..++.+++|||||||||+||+||+.+|++++||||
T Consensus 95 ~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP 173 (250)
T PRK14247 95 PNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEP 173 (250)
T ss_pred CCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999999999987543211 113344556788999999985 357889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 174 TANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred CccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999853 68999999976 4678899999999999999999988764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=355.76 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=183.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------------------ccccCe
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------------------QLFQTT 100 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------------------~~~~~~ 100 (606)
+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRR 117 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCEEcccccccccccccccccccchHHHHHhc
Confidence 469999999999999999999999999999999999987 789999999987632 135678
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 101 CGYVNHRT--DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 101 i~yv~q~~--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
++|++|++ .+++ .||+||+.++.... ..+..+..+++.++++.+||. +..++.+.+|||||||||+||+||+.
T Consensus 118 ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~ 193 (320)
T PRK13631 118 VSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAI 193 (320)
T ss_pred EEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 99999986 4665 49999998875421 234555567788999999997 67899999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH---HHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE---YFR 254 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~---~f~ 254 (606)
+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|+++..|+++++.+ .++
T Consensus 194 ~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~ 271 (320)
T PRK13631 194 QPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIIN 271 (320)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHH
Confidence 9999999999999999999999999999875 489999999975 46889999999999999999999987642 233
Q ss_pred HcCCCCC
Q psy10223 255 SIGFPCP 261 (606)
Q Consensus 255 ~~G~~~~ 261 (606)
..|...|
T Consensus 272 ~~~~~~p 278 (320)
T PRK13631 272 STSIQVP 278 (320)
T ss_pred HcCCCCC
Confidence 4444433
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=336.99 Aligned_cols=197 Identities=27% Similarity=0.378 Sum_probs=173.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cc-cCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LF-QTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~-~~~i~yv~q~~~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... .. ++.++|++|++.+++
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD-GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 359999999999999999999999999999999999987 7899999999987431 12 357999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||.||+.+....+ .....+.++++.++++.+++.+..++.+..||||||||++||++|+.+|++++|||||+|||
T Consensus 102 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD 178 (228)
T PRK10584 102 TLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178 (228)
T ss_pred CcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 999999998865432 12334456778999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
+.++..+.+.|++++++.|.|||+++|++. .+ +.+|++++|++|++++
T Consensus 179 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 179 RQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEe
Confidence 999999999999997666889999999864 45 5699999999999875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=337.47 Aligned_cols=197 Identities=24% Similarity=0.335 Sum_probs=174.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. . .+++.++|++|++.+++.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER-PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 579999999999999999999999999999999999987 789999999987642 1 146789999999998899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||.||+.+..... .....+..++++++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+
T Consensus 94 ~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (222)
T PRK10908 94 RTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170 (222)
T ss_pred ccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCH
Confidence 99999998875432 233444456788899999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
.++..+.+.|+++++ .+.|+|+++|++ +++.+.||++++|++|+++.
T Consensus 171 ~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 171 ALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEcc
Confidence 999999999999976 478999999976 47888999999999999753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=360.26 Aligned_cols=200 Identities=29% Similarity=0.429 Sum_probs=179.4
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++++||+
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 9999999999999999999999999999999987 789999999988742 12456799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.++.... ...+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 94 enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~ 168 (354)
T TIGR02142 94 GNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKY 168 (354)
T ss_pred HHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 9999876421 22334567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++..
T Consensus 169 ~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (354)
T TIGR02142 169 EILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWA 221 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence 999999999876689999999976 57889999999999999999999887753
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=344.33 Aligned_cols=205 Identities=22% Similarity=0.424 Sum_probs=177.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.++ +++|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 45799999999999999999999999999999999999763 368999999988642 134667999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||+||+.+..... ..+..+..++++++++.+++ .+..+++++.|||||||||+||+||+.+|++++||
T Consensus 104 ~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 179 (258)
T PRK14268 104 PFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFD 179 (258)
T ss_pred cCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 888 89999999876432 23344445668889999988 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 180 EPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 180 EPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred CCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999853 68999999975 4788999999999999999999988763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=354.29 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=182.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC---CCeeEEEECCEeCCc---cc----ccCeEEEEcCCC-
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP---QL----FQTTCGYVNHRT- 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~---~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~- 108 (606)
..+|+||||+|++||+++|+|+||||||||+++|+|+.++ +++|+|.++|.++.. +. .++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5699999999999999999999999999999999999863 368999999998743 11 234799999997
Q ss_pred -CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 -DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 -~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+.|.+||.+++....... ....+++.++++.++|+.+||.+ ..++++++|||||||||+||+||+.+|++|++
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 4899999999987765432 12345566778999999999964 57899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++.+++++|+++.++.|.|+|+++|+. +.+.+++|||++|++|++++.|+++++.+
T Consensus 178 DEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 178 DEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAAHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 9999999999999999999999877789999999975 46788999999999999999999988753
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=335.33 Aligned_cols=195 Identities=26% Similarity=0.426 Sum_probs=171.6
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYA 123 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~ 123 (606)
|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+.+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~ 94 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET-PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLG 94 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhcc
Confidence 9999999999999999999999999999999987 789999999998743 12356799999999999999999999876
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L 203 (606)
..... .. .++.++++.++++.+++.+..++++.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|
T Consensus 95 ~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l 171 (211)
T cd03298 95 LSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171 (211)
T ss_pred ccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 43211 11 1234557889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
++++++.++|+|+++|++ +++.++||++++|++|+++..|
T Consensus 172 ~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 172 LDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999866689999999975 5788999999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=337.74 Aligned_cols=200 Identities=31% Similarity=0.482 Sum_probs=170.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. ..++.++|++|++.+. +.+||
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 3579999999999999999999999999999999999987 78999999998764 3467899999998763 34899
Q ss_pred HHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.||+.+....... .........++++++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 167 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKT 167 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 9999886432110 001122345678899999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++| +++.|
T Consensus 168 ~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 168 QEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999976 588999999975 4788999999999876 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=340.13 Aligned_cols=203 Identities=27% Similarity=0.361 Sum_probs=177.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 4579999999999999999999999999999999999987 7899999999886431 1356799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|+.||+.+..... ... ..+..+++++.++ +.+..++.++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 91 tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~ 164 (230)
T TIGR03410 91 TVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQP 164 (230)
T ss_pred cHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 9999998876432 111 1234567778776 67788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++.+.|++++++.++|+|+++|++ +++.++||++++|++|+++..|+.+++
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 165 SIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999765589999999975 578889999999999999999998776
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=346.02 Aligned_cols=206 Identities=19% Similarity=0.323 Sum_probs=179.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR-PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 3569999999999999999999999999999999999987 789999999998731 134567999999975 344
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..|+.||+.+..... .....+..++++++++.+|+.+..+++++.||||||||++||++|+.+|+++||||||+|||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD 168 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 568999998865432 23344445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 169 ~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 169 PAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVLRQGQILTHGAPGEVF 224 (271)
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999975 488999999975 4788999999999999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=346.43 Aligned_cols=204 Identities=25% Similarity=0.386 Sum_probs=177.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCC--CC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~--~~ 110 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV-PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL 98 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhh
Confidence 469999999999999999999999999999999999987 789999999988642 23466799999996 35
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||+||+.+..... ..+.++..++++++++.+++. ...++++++|||||||||+||+||+.+|+++||||||+
T Consensus 99 ~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 174 (280)
T PRK13649 99 FE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174 (280)
T ss_pred cc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 55 69999998865422 233444556788999999997 46799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ .++|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 175 ~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 175 GLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFVYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred cCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999976 489999999976 4788999999999999999999988764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=339.43 Aligned_cols=203 Identities=27% Similarity=0.417 Sum_probs=177.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEc-CCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVN-HRTDLIPS 113 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~-q~~~~~~~ 113 (606)
++.+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.+... ..+++.++|++ |++.+++.
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ-PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 345689999999999999999999999999999999999987 789999999987532 23567899997 55678899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+|++.+..... .....+..+++.++++.+++.+..+++++.||||||||++||++|+.+|++++|||||+|||+
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99999998876532 223344456678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.++..+.+.|++++++.++|+|+++|++ +++.++||++++|++|++++.|
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999876688999999986 4788999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=339.86 Aligned_cols=201 Identities=28% Similarity=0.401 Sum_probs=175.7
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++... ....+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~--~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ-PTSGGVILEGKQITEP--GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCC--ChhheEEecCcccCCCCCHHHHHHH
Confidence 579999999999999999999999999999999987 7899999999987532 1235899999999999999999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
...... ....+.+..++++++++.+++.+..++.+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.
T Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~ 156 (230)
T TIGR01184 78 AVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEE 156 (230)
T ss_pred HHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHH
Confidence 643111 1233444556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+..+
T Consensus 157 l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 157 LMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 9999876689999999976 47889999999999999998886544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=336.82 Aligned_cols=207 Identities=27% Similarity=0.409 Sum_probs=183.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET-PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 3579999999999999999999999999999999999987 7889999999987531 2356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+....+ ........+++.++++.+|+.+..++.+..||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 ~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~ 167 (232)
T cd03300 91 ENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167 (232)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998876532 2233344567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 168 ~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 168 DMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 999999999875689999999986 4688999999999999999999876653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=337.82 Aligned_cols=207 Identities=24% Similarity=0.384 Sum_probs=183.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ-PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 4579999999999999999999999999999999999987 788999999998753 22356799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+....+ ........+++.++++.+++.+..++.++.||+|||||++||++|+.+|++++|||||+|||+.++.
T Consensus 91 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~ 167 (237)
T TIGR00968 91 DNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRK 167 (237)
T ss_pred HHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 9998876532 1233344567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.+.+.|++++++.++|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 168 ~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 168 ELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 999999998765589999999986 4688999999999999999999988764
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=345.86 Aligned_cols=206 Identities=22% Similarity=0.382 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~l 114 (606)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++. .++.+
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK-PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 3569999999999999999999999999999999999987 789999999998753 235678999999974 67789
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.+..... .....+.++++.++++.+++.+..++.++.||||||||++||+||+.+|++++|||||+|||+.
T Consensus 100 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~ 176 (271)
T PRK13632 100 TVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176 (271)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999998875421 2334445567889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.++|+|+++|++. ++ ..||++++|++|+++..|+++++.
T Consensus 177 ~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 230 (271)
T PRK13632 177 GKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSEGKLIAQGKPKEIL 230 (271)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999997655689999999874 45 479999999999999999987764
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=344.62 Aligned_cols=208 Identities=23% Similarity=0.340 Sum_probs=181.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------cccCeEEEEcCCC--CC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQTTCGYVNHRT--DL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~~~i~yv~q~~--~~ 110 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++... ..++.++|++|++ .+
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK-PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc
Confidence 3579999999999999999999999999999999999987 7899999999887421 1456799999996 46
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++.+||.|++.+..... ......+..+++.++++.+|+. ...++++++|||||||||+||+||+.+|++++|||||+
T Consensus 102 ~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 102 NPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred CCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 78899999998765321 1223334456788999999996 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|+|+|+++|++ +.+.+++|++++|++|++++.|+++++.
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcEEEEEeCCEEEEECCHHHHc
Confidence 99999999999999999875689999999975 4788899999999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=341.30 Aligned_cols=207 Identities=29% Similarity=0.421 Sum_probs=178.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~ 110 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 5699999999999999999999999999999999999863 258999999998741 2356789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++.+||.||+.+....+. .....++..++++++++.+++. +..++.+++|||||||||+||+||+.+|++++|||
T Consensus 97 ~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 175 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175 (253)
T ss_pred CCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999988754321 1113334456788899999984 45788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 176 P~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 176 PTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred CCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999864 58999999976 4788999999999999999999988764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=346.59 Aligned_cols=204 Identities=21% Similarity=0.341 Sum_probs=180.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCC-CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~-~~~~l 114 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .++..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR-PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 469999999999999999999999999999999999987 789999999998742 234678999999975 46678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.+..... ..+..+..+++.++++.+|+.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~ 170 (274)
T PRK13644 94 TVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPD 170 (274)
T ss_pred hHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999998875422 2345555667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|+++++ .|.|+|+++|++. ++ +.||++++|++|++++.|+++++.
T Consensus 171 ~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~ 223 (274)
T PRK13644 171 SGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMDRGKIVLEGEPENVL 223 (274)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999975 5899999999864 55 579999999999999999988764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=344.28 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=179.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC--CeeEEEECCEeCCc--------ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT--TRGEIILDGTPMSP--------QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~--~~G~I~~~G~~~~~--------~~~~~~i~yv~q~~ 108 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|..++. .+|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 457999999999999999999999999999999999998632 25999999987642 12356799999999
Q ss_pred CCCCCCCHHHHHHHHHHccCC-----CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIG-----PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
.+++.+||.||+.+......+ ......+.+++++++++.+|+.+..++.++.|||||||||+||+||+.+|++++
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVIL 175 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999876421100 001122345678999999999998999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|++++.
T Consensus 176 lDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred ecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 99999999999999999999999866689999999986 468899999999999999999987754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=338.51 Aligned_cols=210 Identities=21% Similarity=0.261 Sum_probs=177.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc---cc-ccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP---QL-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~---~~-~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+.+|+|.++|.++.. .. .+..++|++|++.+++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 4579999999999999999999999999999999999952 3788999999998643 11 23458999999999999
Q ss_pred CCHHHHHHHHHHccCCC----CCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 114 LTVEQTLYYAAHLSIGP----QVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~----~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+|+.|++.+........ .....+..+++.++++.+++. +..++.+. +|||||||||+||++|+.+|++++||||
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 171 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999998865421110 112233456788999999997 56788887 5999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|+|+|+++|++ +.+... ||++++|++|++++.|+++++.
T Consensus 172 t~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 172 DSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEEEEeCCEEEEecCHHHhc
Confidence 999999999999999999975 588999999986 467777 8999999999999999987544
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=337.60 Aligned_cols=202 Identities=22% Similarity=0.395 Sum_probs=177.2
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
.|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+.+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT-PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 38999999999999999999999999999999987 7899999999987531 234679999999999999999999987
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
..... ... .+...+++.++++.+|+.+..++.++.|||||||||+||++++.+|++++|||||+|||+.++..+.+.
T Consensus 95 ~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~ 171 (232)
T PRK10771 95 GLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL 171 (232)
T ss_pred ccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 54211 011 123456789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+.++..
T Consensus 172 l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 172 VSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999775688999999986 4788999999999999999999987664
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=336.56 Aligned_cols=204 Identities=28% Similarity=0.417 Sum_probs=181.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+|+.||+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~-p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l 92 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK-PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNI 92 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHH
Confidence 8999999999999999999999999999999999987 7899999999987531 2356899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... .....+..+++.++++.+|+.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++..+.
T Consensus 93 ~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~ 169 (235)
T cd03299 93 AYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLR 169 (235)
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHH
Confidence 8875422 2334445567788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.|++++++.++|+|+++|++ +++.++||++++|++|+++..|+.++..
T Consensus 170 ~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 170 EELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999765589999999986 4688899999999999999999877654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=357.87 Aligned_cols=196 Identities=26% Similarity=0.412 Sum_probs=177.7
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..++|++||+
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR-PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 8999999999999999999999999999999987 789999999988642 12467899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.++.. ....++++++++.+|+.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++.
T Consensus 95 enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~ 165 (352)
T PRK11144 95 GNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred HHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 99988643 112456889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++..
T Consensus 166 ~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~i~~ 218 (352)
T PRK11144 166 ELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGKVKAFGPLEEVWA 218 (352)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999876689999999975 57899999999999999999999988753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=342.87 Aligned_cols=208 Identities=22% Similarity=0.368 Sum_probs=179.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|+..+++.+|
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 92 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT-PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGIT 92 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC-CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCcc
Confidence 4579999999999999999999999999999999999987 789999999987642 234567999999998889999
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+.||+.++...... .........+++.++++.+|+.+..++.++.|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 93 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (255)
T PRK11231 93 VRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDIN 172 (255)
T ss_pred HHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 99999875321000 01111234456888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+.++.
T Consensus 173 ~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 173 HQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999875 488999999976 478899999999999999999988765
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-41 Score=344.21 Aligned_cols=205 Identities=24% Similarity=0.411 Sum_probs=179.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK-PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFA 93 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhcc
Confidence 469999999999999999999999999999999999987 788999999998741 124678999999963 3335
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.||.|++.+..... ...+.+..+++.++++.++|.+..++++++||||||||++||++|+.+|++++|||||+|||+
T Consensus 94 ~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~ 170 (275)
T PRK13639 94 PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDP 170 (275)
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 79999998764321 234445556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|++++++ |.|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 171 ~~~~~l~~~l~~l~~~-~~til~vtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 171 MGASQIMKLLYDLNKE-GITIIISTHDV-DLVPVYADKVYVMSDGKIIKEGTPKEVF 225 (275)
T ss_pred HHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999764 89999999975 5788899999999999999999998874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=331.80 Aligned_cols=199 Identities=22% Similarity=0.380 Sum_probs=175.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+++|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.||+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~ 91 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNI 91 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHH
Confidence 4689999999999999999999999999999999987 789999999998743 23567899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+...... . ...+.+++++++++.+|+.+..++.++.||||||||++||++|+.+|++++|||||+|||+.++..+.
T Consensus 92 ~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 168 (213)
T TIGR01277 92 GLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML 168 (213)
T ss_pred HhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 87643211 1 12223456788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
+.|++++++.++|+|+++|++ +++.++||++++|++|+++..|.
T Consensus 169 ~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 169 ALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEecC
Confidence 999999876689999999975 46788999999999999998875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=341.88 Aligned_cols=208 Identities=25% Similarity=0.367 Sum_probs=179.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR-PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 4579999999999999999999999999999999999987 788999999988643 234567999999988888899
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|.||+.+....... ......+..+++.++++.+++.+..++.+..|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 171 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVR 171 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 99999875321000 01111233457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|+.++.
T Consensus 172 ~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 224 (256)
T TIGR03873 172 AQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGGRVVAAGPPREV 224 (256)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEEEecCHHHh
Confidence 99999999999975 478999999986 478899999999999999999998765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-41 Score=332.63 Aligned_cols=197 Identities=26% Similarity=0.393 Sum_probs=173.0
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~ 110 (606)
+++.+ |+|+++++ |+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK-PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 33444 99999999 9999999999999999999999987 789999999987642 1245679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
++.+|+.||+.+..... .....++++.++++.+|+.+..++++++||||||||++||++|+.+|++++|||||+|
T Consensus 87 ~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 161 (214)
T cd03297 87 FPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA 161 (214)
T ss_pred CCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999998765321 2233456788999999999889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
||+.++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999876688999999975 4688899999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=344.93 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=181.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe---eEEEECCEeCCc---ccccCeEEEEcCCCC-CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP---QLFQTTCGYVNHRTD-LIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~---G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+ |+|.++|.++.. ...++.++|++|++. .++
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~ 98 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFV 98 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhc
Confidence 469999999999999999999999999999999999987 555 999999998753 234678999999974 677
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..||.||+.+..... ..+..+..+++.++++.+||.+..+++++.||||||||++||+||+.+|++++|||||+|||
T Consensus 99 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD 175 (282)
T PRK13640 99 GATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLD 175 (282)
T ss_pred cCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 899999998865422 24455556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++..+.+.|++++++.|+|||+++|++. ++ ..||++++|++|++++.|+++++.+
T Consensus 176 ~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 176 PAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999998766899999999864 45 5799999999999999999987753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=340.48 Aligned_cols=205 Identities=21% Similarity=0.351 Sum_probs=176.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~ 110 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 5699999999999999999999999999999999999873 258999999988632 2356789999999888
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++ +||+||+.+...... ........++++++++.+++ .+..++++++|||||||||+||++|+.+|++++|||
T Consensus 100 ~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 176 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176 (254)
T ss_pred cc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 85 899999998754321 11233445678888999887 456788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+|||+.++..+.+.|++++ + +.|+|+++|++ +++.+++||+++|++|+++..|+++++.
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 177 PTSALDPISTGKIEELIINLK-E-SYTIIIVTHNM-QQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999995 3 68999999976 4788999999999999999999988764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=336.76 Aligned_cols=204 Identities=25% Similarity=0.352 Sum_probs=177.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCCcccc-cCeEEEEcCCCC--CCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLF-QTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~~~~~-~~~i~yv~q~~~--~~~~l 114 (606)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+ + .+|+|.++|.++..... ++.++|++|++. +.+.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5799999999999999999999999999999999987 5 78999999998754322 357999999984 66789
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc---hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS---NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
|+.|++.+..... ........+++.++++.+++. +..++.++.|||||||||+||++|+.+|++++|||||+||
T Consensus 80 t~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L 156 (230)
T TIGR02770 80 TMGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL 156 (230)
T ss_pred CHHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 9999998765422 112233456789999999998 6789999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+.++..+.+.|++++++.++|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 157 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 157 DVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999765688999999976 4788999999999999999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=333.74 Aligned_cols=199 Identities=29% Similarity=0.448 Sum_probs=177.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.... ++.++|++|++.+++.+|++|
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 4579999999999999999999999999999999999987 78999999998875332 357999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+..... ... .+++.++++.+|+++..++.++.||||||||++||+|++.+|++++|||||+|||+.++..
T Consensus 90 ~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~ 162 (223)
T TIGR03740 90 NLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQE 162 (223)
T ss_pred HHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHH
Confidence 998766432 111 2457889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|++.+
T Consensus 163 l~~~L~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 163 LRELIRSFPE-QGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999975 488999999986 46889999999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=343.30 Aligned_cols=207 Identities=20% Similarity=0.339 Sum_probs=180.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC--CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~--~~~~l 114 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. +++.+
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 104 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ 104 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcch
Confidence 469999999999999999999999999999999999987 789999999998752 123457999999975 67889
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.+++.+...... .....+..+++.++++.+++. +..++.+..|||||||||+||++|+.+|++++|||||+|||+
T Consensus 105 tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 105 RISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred hHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 99999988665321 223344556788999999994 678889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+.+.|++++++.|.|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 183 ~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 183 SMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEecCCHHHHh
Confidence 9999999999999876689999999976 5788899999999999999999877654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=338.73 Aligned_cols=202 Identities=29% Similarity=0.443 Sum_probs=177.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .|
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID-PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 3569999999999999999999999999999999999987 789999999988642 235678999999998887 69
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|+||+.+....+ . ...+++.++++.+++. +..++.++.|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 93 v~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~ 165 (241)
T PRK14250 93 VKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165 (241)
T ss_pred HHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 999998754321 1 1234678899999997 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 166 ~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (241)
T PRK14250 166 STEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGILVEYAKTYDFF 220 (241)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEEEEeCCHHHHh
Confidence 999999999999765689999999975 4788899999999999999999988763
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=343.95 Aligned_cols=206 Identities=23% Similarity=0.379 Sum_probs=180.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCC-CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTD-LIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~-~~~~l 114 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++. .+...
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 101 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI-PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT 101 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeccccccHHHHhhheEEEecChhhhhccc
Confidence 569999999999999999999999999999999999987 789999999998753 234678999999974 23346
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|++.|..... ..+..+.+++++++++.+||.+..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 102 ~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~ 178 (280)
T PRK13633 102 IVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178 (280)
T ss_pred cHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 9999999876422 2344555677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++..+.+.|++++++.|.|+|+++|++. ++.. ||++++|++|+++..|+++++..
T Consensus 179 ~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 179 GRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999997656899999999875 5554 99999999999999999988753
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=350.79 Aligned_cols=209 Identities=20% Similarity=0.288 Sum_probs=182.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC--CeeEEEECCEeCCc---cc---cc-CeEEEEcCCC--
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT--TRGEIILDGTPMSP---QL---FQ-TTCGYVNHRT-- 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~--~~G~I~~~G~~~~~---~~---~~-~~i~yv~q~~-- 108 (606)
..+|+||||+|++||+++|+|+||||||||+++|+|+.++. .+|+|.++|.++.. .. +| +.++|++|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 57999999999999999999999999999999999998732 38999999998743 11 23 4799999998
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
.+.|.+|+.+++........ ..++.+..+++.++++.+||.+ ..++++++|||||||||+||+||+.+|+++++|
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 68899999999987654321 2345556678899999999974 357899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++.++++.|+++.++.|.|+|+++|+. ..+.+++||+++|++|++++.|+++++.+
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~Dri~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 187 EPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICDKVLVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999877789999999975 46788999999999999999999988753
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=339.14 Aligned_cols=205 Identities=25% Similarity=0.427 Sum_probs=175.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|+++.. ...++.++|++|++.
T Consensus 18 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 97 (253)
T PRK14242 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN 97 (253)
T ss_pred CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence 3569999999999999999999999999999999999853 1 468999999988742 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||.||+.+....+. ....+...++++++++.+++.+ ..++.++.|||||||||+||++|+.+|++++||
T Consensus 98 ~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 98 PFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred CCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 599999998754321 1123344567888999999853 568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||+|||+.++..+.+.|++++ + ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 175 EPASALDPIATQKIEELIHELK-A-RYTIIIVTHNM-QQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999985 3 68999999976 478899999999999999999988765
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=339.22 Aligned_cols=207 Identities=22% Similarity=0.386 Sum_probs=178.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35799999999999999999999999999999999999863 268999999988631 235678999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++.+||.||+.+....+. ..++.+.+++++++++.+++. +..++.+++|||||||||+||+||+.+|++++||
T Consensus 96 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173 (258)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999999999988764321 113344456788899999984 5678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc------CCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC------LGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~------~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|+ +|++++.|+++++.
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 174 EPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 99999999999999999999853 58999999975 47889999999997 79999999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=339.37 Aligned_cols=206 Identities=27% Similarity=0.443 Sum_probs=177.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 25 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 104 (260)
T PRK10744 25 KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT 104 (260)
T ss_pred CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence 3569999999999999999999999999999999999975 1 468999999988742 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.+..... ...+..+..++++++++.+++. +..++.+++||||||||++||+||+.+|++++||
T Consensus 105 ~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 181 (260)
T PRK10744 105 PFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD 181 (260)
T ss_pred cCc-CcHHHHHhhhHhhc--CCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 888 89999998875422 1234444556788999999974 5578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + +.|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 182 EPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 182 EPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNM-QQAARCSDYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999985 3 68999999975 4688899999999999999999988764
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=346.36 Aligned_cols=204 Identities=21% Similarity=0.338 Sum_probs=177.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--------ccccCeEEEEcCCCC--C
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--------QLFQTTCGYVNHRTD--L 110 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--------~~~~~~i~yv~q~~~--~ 110 (606)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++. +
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII-SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 59999999999999999999999999999999999987 789999999987631 234678999999973 3
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++ .||+||+.+..... .....+..+++.++++.++|. +..++.++.|||||||||+||+||+.+|++|+|||||+
T Consensus 104 ~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~ 179 (289)
T PRK13645 104 FQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTG 179 (289)
T ss_pred hh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 44 69999998865421 223444456788899999994 68899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|++++.|+.+++.
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 180 GLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999765689999999975 4788999999999999999999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=350.55 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=179.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC---CCeeEEEECCEeCCc---cc----ccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP---QL----FQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~---~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~ 108 (606)
.+.+|+|||++|++||+++|+|+||||||||+|+|+|+.+. +++|+|.++|+++.. .. .++.++|++|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35799999999999999999999999999999999999752 468999999998742 11 235799999997
Q ss_pred C--CCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 109 D--LIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 109 ~--~~~~lTV~e~l~f~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
. +.|.+||.+++........... ....+.++++.++|+.+||.+ ..++++++|||||||||+||+||+.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 5 6889999999976533110000 112234567889999999974 5689999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|++||||+|||+.++.+++++|+++.++.|.|+|+++|+. +.+.+++|||++|++|++++.|+++++.
T Consensus 179 llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLSQWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999876689999999975 5788999999999999999999988764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=336.84 Aligned_cols=207 Identities=23% Similarity=0.398 Sum_probs=177.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~ 113 (606)
.+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+.+|+|.++|+++.. ..+++.++|++|++.+++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~- 92 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV- 92 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-
Confidence 4579999999999999999999999999999999999874 2578999999998753 235678999999998887
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+||+.++...+.. .......++++.++++.+++. +..++.++.|||||||||+||+||+.+|++++|||||+
T Consensus 93 ~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 171 (246)
T PRK14269 93 KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTS 171 (246)
T ss_pred ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 6999999887543211 011233455678899999994 45688899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++.+ ++|+|+++|++ +++.+++|++++|++|++++.|++++..
T Consensus 172 ~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 172 ALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHLGELIEFGESKEFF 229 (246)
T ss_pred cCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999853 78999999975 4788999999999999999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=341.37 Aligned_cols=205 Identities=20% Similarity=0.320 Sum_probs=180.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. .++..|
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 98 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGAT 98 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCC
Confidence 459999999999999999999999999999999999987 789999999998753 235678999999974 677889
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|.||+.+..... ...+.+..++++++++.+|+.+..++++..|||||||||+||+||+.+|+++|+||||+|||+.+
T Consensus 99 v~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~ 175 (277)
T PRK13642 99 VEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTG 175 (277)
T ss_pred HHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 999998865421 23444455678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+..+.+.|++++++.|+|+|+++|+.. ++. .+|++++|++|+++..|++++..
T Consensus 176 ~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~G~i~~~g~~~~~~ 228 (277)
T PRK13642 176 RQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKAGEIIKEAAPSELF 228 (277)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999998766899999999864 454 69999999999999999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=339.80 Aligned_cols=207 Identities=21% Similarity=0.380 Sum_probs=177.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 31 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 35799999999999999999999999999999999999863 378999999988742 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+. ...++.+..+++.++++.+++.+ ..++.+++|||||||||+||++|+.+|++++||
T Consensus 111 ~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 188 (267)
T PRK14235 111 PFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188 (267)
T ss_pred CCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 8885 99999998764321 11123334567888999999954 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +.+.++||++++|++|+++..|+++++.
T Consensus 189 EPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 189 EPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred CCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999864 58999999975 4788999999999999999999987763
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=340.38 Aligned_cols=205 Identities=20% Similarity=0.378 Sum_probs=174.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+.+. +++|+|.++|.++.. ...++.++|++|++.
T Consensus 25 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 25 TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 35799999999999999999999999999999999998752 478999999988631 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||+||+.+.+..+ .... ...+++.++++.+++ .+..+++++.|||||||||+||+||+.+|++++||
T Consensus 105 l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 179 (269)
T PRK14259 105 PFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD 179 (269)
T ss_pred cchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8884 9999999876432 1222 234567788888876 45678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-----------CeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-----------GDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-----------G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++ |+++++|+++++.+
T Consensus 180 EPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 180 EPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 99999999999999999999853 68999999975 578999999999996 67899999988753
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=338.07 Aligned_cols=210 Identities=24% Similarity=0.378 Sum_probs=185.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-C---CCeeEEEECCEeCC---cc---cc-cCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-G---TTRGEIILDGTPMS---PQ---LF-QTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~---~~~G~I~~~G~~~~---~~---~~-~~~i~yv~q~ 107 (606)
...+++||||++++||+++|+|.|||||||+.+.|.|+++ + ..+|+|.++|+++. ++ .+ .+.|++++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4579999999999999999999999999999999999986 2 24699999999763 22 23 3579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHccCCCCC-CHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 108 T--DLIPSLTVEQTLYYAAHLSIGPQV-SRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 108 ~--~~~~~lTV~e~l~f~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
+ .+.|.+||.+.+.-..+.+. .. ++++..+++.++|+.+|+.+ ..+.++++|||||||||.||.||+.+|++
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 6 48999999999988776532 12 45567788999999999975 67999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.||||++||...+.+++++|+++.++.|.++|+++|+. .-+.++||||+||+.|++|+.|+++++.+
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~aDri~VMYaG~iVE~g~~~~i~~ 243 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIADRVAVMYAGRIVEEGPVEEIFK 243 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcceEEEEECcEEEEeCCHHHHhc
Confidence 9999999999999999999999999998899999999974 57999999999999999999999998753
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=338.64 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=193.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---c-ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---L-FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~-~~~~i~yv~q~~~~~~ 112 (606)
..-++|+|++|+.||+..|||-||||||||+|+|.++.. |++|+|+++|.++.. + . .|+++++|+|...++|
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie-pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC-CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 456899999999999999999999999999999999988 899999999998742 1 2 3568999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.||.||..|+.+++ ++++.+.++++.++|+.+||+...++++++|||||||||.|||||+.+|+||++|||+|+||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALD 196 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcC
Confidence 999999999999864 57888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|--+.++-+.|.++.++.++||++++|+ .+|+.++-|||.+|++|++|-.|+++|++.
T Consensus 197 PLIR~~mQdeLl~Lq~~l~KTIvFitHD-LdEAlriG~rIaimkdG~ivQ~Gtp~eIl~ 254 (386)
T COG4175 197 PLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIMKDGEIVQVGTPEEILL 254 (386)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEecC-HHHHHhccceEEEecCCeEEEeCCHHHHHc
Confidence 9999999999999998899999999986 679999999999999999999999999863
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=335.43 Aligned_cols=206 Identities=22% Similarity=0.406 Sum_probs=175.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC--CCC--CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS--SGT--TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~--~~~--~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+. .++ .+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 357999999999999999999999999999999999962 123 48999999998742 234668999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .|+.||+.+....+. ........++++++++.+++.+ ..++.++.|||||||||+||++|+.+|++++||
T Consensus 95 ~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 171 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMD 171 (250)
T ss_pred cCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 887 599999988754321 1122234466788999999853 568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + ++|+|+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 172 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~-~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 172 EPASALDPISTAKVEELIHELK-K-DYTIVIVTHNM-QQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999985 3 68999999976 4788999999999999999999998874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=341.32 Aligned_cols=210 Identities=24% Similarity=0.345 Sum_probs=178.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC--------eeEEEECCEeCCc---ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT--------RGEIILDGTPMSP---QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~--------~G~I~~~G~~~~~---~~~~~~i~yv~q~ 107 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +. +|+|.++|.++.. ...++.++|++|+
T Consensus 13 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 4579999999999999999999999999999999999987 55 8999999988742 2345678999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh---------h
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV---------K 177 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~---------~ 177 (606)
+..++.+||+||+.+....... ......+..++++++++.+++.+..++.++.|||||||||+||++|+ .
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~ 171 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQ 171 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCC
Confidence 8766679999999875321100 01111234456889999999999999999999999999999999999 5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|++++|||||+|||+.++..+.+.|++++++.|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 172 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 172 PPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999999999999875589999999986 4788899999999999999999987763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=336.68 Aligned_cols=206 Identities=22% Similarity=0.371 Sum_probs=177.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|+++++||+++|+||||||||||||+|+|+.++ +++|+|.++|.++.. ...++.++|++|++.
T Consensus 32 ~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 46799999999999999999999999999999999999752 478999999998742 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.++.... ....+.+..+++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 112 ~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 188 (267)
T PRK14237 112 PFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD 188 (267)
T ss_pred ccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 887 59999998875421 1123334456788899999984 4678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + +.|+|+++|++. ++.++||++++|++|++++.|+++++.
T Consensus 189 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 189 EPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999985 3 689999999864 788999999999999999999988763
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=325.06 Aligned_cols=180 Identities=28% Similarity=0.464 Sum_probs=160.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 46799999999999999999999999999999999999863 578999999998753 23567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.++.... .++.+..||||||||++||+||+.+|++++|||||+|||+.
T Consensus 99 tv~~~l~~~~~~~--------------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 99 TVRETLDFALRCK--------------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 (202)
T ss_pred cHHHHHhhhhhhc--------------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHH
Confidence 9999998764310 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
++..+.+.|++++++.+.|+|+++||..+++.++||++++|++|++++.|
T Consensus 153 ~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 153 TALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999987557787877787777899999999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=334.58 Aligned_cols=206 Identities=23% Similarity=0.401 Sum_probs=177.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 35799999999999999999999999999999999998763 268999999998742 134677999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +|+.||+.+...... .....+..+++.++++.+++. +..++.+++||||||||++||++|+.+|++++||
T Consensus 96 ~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 172 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172 (251)
T ss_pred cCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 899999998754321 112334456678899999874 4578889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++|||+++|++|++++.|+++++.
T Consensus 173 EP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 173 EPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 99999999999999999999865 48999999975 5788999999999999999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=333.80 Aligned_cols=207 Identities=24% Similarity=0.438 Sum_probs=177.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +++|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 3579999999999999999999999999999999999974 2 258999999998742 235678999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++.+|+.||+.+..... ......+..+++.++++.+++.+ ..++.++.||||||||++||++|+.+|++++||
T Consensus 96 ~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999998765432 11223344566888999999853 567889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 174 EP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 174 EPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSDYTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999964 47999999975 4788999999999999999999987753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=335.60 Aligned_cols=207 Identities=22% Similarity=0.293 Sum_probs=177.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-----CCc---cc----ccCeEEEEcCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-----MSP---QL----FQTTCGYVNHR 107 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-----~~~---~~----~~~~i~yv~q~ 107 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+ +.. .. .++.++|++|+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA-PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 569999999999999999999999999999999999987 789999999987 532 11 24579999999
Q ss_pred CC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 108 TD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 108 ~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+. +++.+|+.||+.+..... . .....+.++++.++++.+++.+ ..++.++.|||||||||+||+||+.+|++++|
T Consensus 98 ~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llll 175 (258)
T PRK11701 98 PRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175 (258)
T ss_pred cccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 73 678899999997654321 1 1122234567889999999974 78999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+.+.+|++++|++|++++.|+++++.
T Consensus 176 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999998776689999999975 4677899999999999999999987753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=309.58 Aligned_cols=199 Identities=28% Similarity=0.411 Sum_probs=180.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cc-cCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LF-QTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~-~~~i~yv~q~~~~ 110 (606)
....||++|++.|++||-++|+|||||||||||-+++|+.. +++|+|.+.|+++.. + .+ .+++|+|+|...+
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~-~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~L 99 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD-PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHL 99 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC-CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeec
Confidence 45689999999999999999999999999999999999988 789999999998753 1 23 4689999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|+||..||+...+.++. .+........+++|+.+||.+..+.++++|||||+|||+||||++..|+|||.||||-+
T Consensus 100 ip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGN 176 (228)
T COG4181 100 IPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGN 176 (228)
T ss_pred cccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCC
Confidence 999999999999988753 23334456788999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
||..+..++.++|-.+.++.|.|.++++|+| .+..-|||.+-|.+|+++.
T Consensus 177 LD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 177 LDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred cchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999987 4788899999999999874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=338.93 Aligned_cols=206 Identities=23% Similarity=0.382 Sum_probs=175.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 3569999999999999999999999999999999999753 2 378999999988642 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+. ..+....++++.++++.+++ .+..++.++.|||||||||+||+||+.+|++++||
T Consensus 131 l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 207 (286)
T PRK14275 131 PFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207 (286)
T ss_pred CCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8885 99999998754321 11223344567888888887 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 208 EPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 208 EPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999864 58999999975 4788899999999999999999988764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=326.08 Aligned_cols=190 Identities=27% Similarity=0.488 Sum_probs=167.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC---c----ccccCeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---P----QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~---~----~~~~~~i~yv~q~~~~~ 111 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. . ...++.++|++|++.++
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK-FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 3579999999999999999999999999999999999987 78999999999853 1 12456899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+.+|++||+.+..... ...+.+..++++++++.+|+.+..++++++||||||||++||+||+.+|++++|||||+||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~L 165 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSL 165 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCC
Confidence 9999999999875432 2334445667899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
|+.++..+.+.|+++++ .|.|+|+++|++. ..+.||++++|
T Consensus 166 D~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 166 DPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999876 4889999999864 45789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=335.36 Aligned_cols=206 Identities=22% Similarity=0.390 Sum_probs=176.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+||||||||||||+|+|..++ + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 24 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 35799999999999999999999999999999999998752 2 58999999998742 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+..... ....+.+..++++++++.+++. +..++.+++||||||||++||++|+.+|++++||
T Consensus 104 ~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 104 PFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred cccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8886 9999998865432 1112334456678899999985 3568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999853 68999999975 4788999999999999999999988764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=333.07 Aligned_cols=206 Identities=27% Similarity=0.430 Sum_probs=175.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CC---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GT---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+ .+|+|.++|.++.. ..+++.++|++|++.
T Consensus 17 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 96 (252)
T PRK14239 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN 96 (252)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence 3579999999999999999999999999999999999843 13 48999999998732 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||.||+.+..... . ........+++.++++.+++. +..++.+++|||||||||+||+||+.+|++++||
T Consensus 97 ~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14239 97 PFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLD 173 (252)
T ss_pred cCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 887 89999998875432 1 112233456678889999874 4568899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+.||++++|++|++++.|+.+++.
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 174 EPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred CCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999864 58999999975 4788999999999999999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=335.03 Aligned_cols=204 Identities=22% Similarity=0.346 Sum_probs=176.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCCcccc-cCeEEEEcCCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSPQLF-QTTCGYVNHRTD--LIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~~~~~-~~~i~yv~q~~~--~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ + ++|+|.++|.+++.... ++.++|++|++. +.+
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~ 94 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNP 94 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeeccccccccceEEEEecCCccccCc
Confidence 469999999999999999999999999999999999987 5 78999999998754322 457999999974 556
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.+|+.+++.+.+... .... ..+++.++++.+++.+ ..++.++.|||||||||+||+||+.+|++|+|||||+
T Consensus 95 ~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~ 169 (254)
T PRK10418 95 LHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTT 169 (254)
T ss_pred cccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 789999987654321 1122 2356889999999986 5789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.|+|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 170 ~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 170 DLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999876689999999975 4678899999999999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=333.58 Aligned_cols=207 Identities=23% Similarity=0.425 Sum_probs=175.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 4579999999999999999999999999999999999864 1 368999999987642 124678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+ ..........+++.++++.+|+.+ ..++.+++|||||||||+||++|+.+|++++||
T Consensus 97 ~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 97 PFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred cccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8886 9999998875432 111123334456788999999965 457889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++. + ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSM-KQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999985 3 78999999986 4788899999999999999999987653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=335.18 Aligned_cols=206 Identities=24% Similarity=0.407 Sum_probs=174.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 33 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 4579999999999999999999999999999999999753 1 478999999998742 134668999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. |+.||+.+..... ........++++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 113 ~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 113 PFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred cCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 8885 9999998865421 1112223345677888888884 4578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999964 57999999985 4688999999999999999999987764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=327.49 Aligned_cols=196 Identities=30% Similarity=0.451 Sum_probs=174.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~~ 113 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS-VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGF 96 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCC
Confidence 679999999999999999999999999999999999987 789999999998742 1246789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|+.||+.++.... ......+..+++.++++.+|+.+..++.++.||+|||||++||++|+.+|++++|||||+|||+
T Consensus 97 ~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 97 LTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred CCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 99999999876432 1133444566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+.+.|++++++.++|+|+++|++. +.++||++++|++|++
T Consensus 175 ~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 175 KSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999998656899999999863 5689999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=368.93 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=182.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +++|+|.++|.++... ..++.++|++|++.+++.
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 35799999999999999999999999999999999999873 3789999999987531 135679999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.+....+.....+..+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~ 176 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 99999998875432111123334456789999999999889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++.+.|+++++ .|.|+|+++|++ +++.++||++++|++|++++.|+++++
T Consensus 177 ~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 177 SETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEEeeecccccC
Confidence 999999999999975 588999999975 578899999999999999999998765
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=332.00 Aligned_cols=206 Identities=22% Similarity=0.422 Sum_probs=176.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 35799999999999999999999999999999999999762 278999999988642 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.+...... ...+...+++++++++.+++. +..++.+++||||||||++||+||+.+|++++||
T Consensus 95 ~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD 171 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171 (250)
T ss_pred cCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 888 899999998754321 112333445678889999885 3578899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 172 EPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred CCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999864 58999999975 4688999999999999999999988764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=331.39 Aligned_cols=206 Identities=23% Similarity=0.412 Sum_probs=175.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|..+. + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14240 15 DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN 94 (250)
T ss_pred CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc
Confidence 35799999999999999999999999999999999998642 2 58999999998742 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||.||+.+...... .....+.++++.++++.+++. +..++++++|||||||||+||++|+.+|++++||
T Consensus 95 ~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 95 PFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred cCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 899999998754321 112334456788888888874 4568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++ + ++|+|+++|+. +++.+++|++++|++|+++..|+++++.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 172 EPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNM-QQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCH-HHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999985 3 68999999975 5788999999999999999999987763
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=331.68 Aligned_cols=207 Identities=26% Similarity=0.426 Sum_probs=175.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++. .+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 357999999999999999999999999999999999997632 37999999988742 234678999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++.+|+.||+.+...... ...+.+..+++.++++.+++ .+..+++++.||||||||++||++|+.+|++++||
T Consensus 96 ~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD 173 (252)
T ss_pred cCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999987654221 11233334566777777765 34568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|++++.|++++..
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 174 EPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999863 58999999976 4788899999999999999999988764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=331.50 Aligned_cols=205 Identities=22% Similarity=0.409 Sum_probs=174.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc----ccccCeEEEEcCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~ 110 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 35799999999999999999999999999999999999763 258999999988631 2356789999999998
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++ .||.||+.+..... ....+...++++.++++.+++. +..++.+++|||||||||+||++|+.+|++++|||
T Consensus 95 ~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 171 (249)
T PRK14253 95 FP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171 (249)
T ss_pred Cc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 88 89999998875421 1112333446677888888874 45678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 172 P~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 172 PTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred CCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999964 48999999986 578999999999999999999998765
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=333.15 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=177.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC-----CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-----TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~-----~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
+.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 98 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN 98 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence 469999999999999999999999999999999999987 4 37999999988631 234677999999988
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +|+.||+.+...... ..+..+..+++.++++.+++. +..++.+..||||||||++||++|+.+|++++||
T Consensus 99 l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD 175 (261)
T PRK14258 99 LFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175 (261)
T ss_pred cCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 888 899999988754221 112333446678899999874 4578889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-----CeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-----GDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-----G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|++++++.++|+|+++|++ .++.++||+|++|++ |++++.|+++++.
T Consensus 176 EP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 999999999999999999998765689999999986 578999999999999 9999999998874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=334.50 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=176.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 37 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 45799999999999999999999999999999999999763 378999999998742 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+..... ....+...++++.++++.+++. +..++.++.|||||||||+||++|+.+|++++||
T Consensus 117 l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 117 PFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred cCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 8886 9999998875432 1112233345678889999885 3568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.++||++++|++|+++..|++++..
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 99999999999999999999964 58999999975 4688999999999999999999987653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=366.23 Aligned_cols=208 Identities=20% Similarity=0.345 Sum_probs=181.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT-RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL 94 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC
Confidence 4579999999999999999999999999999999999987 7899999999987421 1346799999999999999
Q ss_pred CHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||+|++.++...... ...+..+.++++.++++.+|+.+..++++++|||||||||+||+||+.+|++|+|||||+|||+
T Consensus 95 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 174 (501)
T PRK10762 95 TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174 (501)
T ss_pred cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCH
Confidence 999999886532110 1123334456788999999999989999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 175 ~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (501)
T PRK10762 175 TETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQFIAEREVADL 228 (501)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEecCcCcC
Confidence 999999999999975 488999999975 578899999999999999999987754
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=334.68 Aligned_cols=208 Identities=24% Similarity=0.367 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~ 110 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES-PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred ceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 3679999999999999999999999999999999999987 789999999987642 12467899999997 46
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
++..|+.|++.+..... ......+...+++++++.+|+. +..++.++.||||||||++||++|+.+|++++|||||+
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~ 180 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVS 180 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 78899999997754311 1223444556789999999997 58899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|++++++.+.|+|+++|++ +++.++||++++|++|++++.|+++++.
T Consensus 181 ~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 181 NLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999876689999999975 4788899999999999999999988754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=332.30 Aligned_cols=206 Identities=21% Similarity=0.387 Sum_probs=176.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--C--CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--T--TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~--~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.++ + ++|+|.++|.++.. ...++.++|++|++.
T Consensus 19 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 98 (259)
T PRK14260 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN 98 (259)
T ss_pred CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc
Confidence 35799999999999999999999999999999999998763 2 48999999988642 234668999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ +||+||+.+....+. ..++.+..+++.++++.+++ .+..++.+++|||||||||+||+||+.+|++++||
T Consensus 99 l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 175 (259)
T PRK14260 99 PFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175 (259)
T ss_pred cCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888 899999988754321 12333445667888999988 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc-----CCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC-----LGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~-----~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|+ +|++++.|+++++.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 176 EPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM-QQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 99999999999999999999864 58999999976 57899999999998 59999999998864
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=328.75 Aligned_cols=208 Identities=22% Similarity=0.264 Sum_probs=173.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-CCCCeeEEEECCEeCCc---ccccC-eEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-SGTTRGEIILDGTPMSP---QLFQT-TCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-~~~~~G~I~~~G~~~~~---~~~~~-~i~yv~q~~~~~~~l 114 (606)
+.+|+|+|+++++||+++|+|+||||||||+++|+|+. ..+.+|+|.++|.++.. ...++ .++|++|++.+++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 46999999999999999999999999999999999973 12688999999988743 12222 488999999999999
Q ss_pred CHHHHHHHHHHccCC----CCCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 115 TVEQTLYYAAHLSIG----PQVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 115 TV~e~l~f~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+.+++.+....... ......+..+++.++++.+++. +..++.+. +|||||||||+||+||+.+|++++|||||
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 999999876432110 0112223346678899999997 46788887 59999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++..+.+.|+++++ .|+|+|+++|++. .+... +|++++|++|++++.|+++.+
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMT-SENSIILITHYQR-LLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999875 5899999999853 55555 899999999999999998844
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=330.02 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=175.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+.++ +.+|+|.++|+++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 35799999999999999999999999999999999999752 368999999998642 134677999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||+||+.+...... ........+++.++++.+++. +..++.+++||||||||++||+||+.+|++++||
T Consensus 96 ~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD 172 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD 172 (251)
T ss_pred cCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 886 799999988654221 112223345678889999984 4568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+++|++++|++|+++..|+.+++.
T Consensus 173 EP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 173 EPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999853 58999999976 4788999999999999999999987763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=332.60 Aligned_cols=201 Identities=24% Similarity=0.402 Sum_probs=168.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV-PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RSI 92 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-chH
Confidence 569999999999999999999999999999999999987 789999999987642 235678999999988775 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+.+... ........ ....++++.+ ++....++++++|||||||||+||+||+.+|++++|||||+
T Consensus 93 ~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~ 167 (237)
T cd03252 93 RDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATS 167 (237)
T ss_pred HHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 999977432 11111111 1234455555 66666788899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++ + |+|+|+++|++. ++ +.||++++|++|++++.|+++++.+
T Consensus 168 ~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~-~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 168 ALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLS-TV-KNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999986 3 789999999874 45 5699999999999999999887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=365.70 Aligned_cols=208 Identities=24% Similarity=0.350 Sum_probs=180.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+||++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE-PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL 95 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC-CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCC
Confidence 4579999999999999999999999999999999999987 7899999999987531 1345799999999999999
Q ss_pred CHHHHHHHHHHccC-CCC---CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 115 TVEQTLYYAAHLSI-GPQ---VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 115 TV~e~l~f~~~~~~-~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
||+||+.++..... ..+ ....+..+++.++++.+|+.+..++++++|||||||||+||++|+.+|++++|||||+|
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~ 175 (510)
T PRK09700 96 TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSS 175 (510)
T ss_pred cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999987542110 001 12334456788999999999989999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+.++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|++++.|+++++
T Consensus 176 LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 176 LTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999976 489999999974 578899999999999999999998765
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=330.50 Aligned_cols=208 Identities=21% Similarity=0.289 Sum_probs=175.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-----CCc---c----cccCeEEEEcC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-----MSP---Q----LFQTTCGYVNH 106 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-----~~~---~----~~~~~i~yv~q 106 (606)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.+ +.. . ..++.++|++|
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q 93 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA-PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQ 93 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEe
Confidence 3568999999999999999999999999999999999987 788999999976 431 1 12456999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
++. +.+.+|+.||+.+..... . .....+..+++.++++.+++. +..++.++.|||||||||+||+||+.+|++++
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vll 171 (253)
T TIGR02323 94 NPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVF 171 (253)
T ss_pred CcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 974 556789999987643211 1 011123346788999999997 47899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||||+|||+.++..+.+.|++++++.|.|+|+++|++ +++.+++|++++|++|+++..|+++++.
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLLAQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999998766689999999975 5788899999999999999999987664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=333.61 Aligned_cols=208 Identities=23% Similarity=0.380 Sum_probs=177.9
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc----ccccCeEEEEcCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP----QLFQTTCGYVNHRT 108 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~ 108 (606)
++.+.+|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred ECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 3346799999999999999999999999999999999999863 368999999988742 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++ .||+||+.+..... ...+..+..+++.++++.+++.+ ..++.++.|||||||||+||++|+.+|++++|
T Consensus 111 ~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 111 NPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred ccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8888 89999998865421 11234444556778899999864 45788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+++||+++|++|+++..|+++++.
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 47999999975 5788999999999999999999988764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=328.60 Aligned_cols=205 Identities=21% Similarity=0.380 Sum_probs=174.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-----eeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-----RGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-----~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +. +|+|.++|.++.. ...++.++|++|++
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 94 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP 94 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence 3569999999999999999999999999999999999987 44 6999999988642 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++. ||.||+.+....+. . ..++...++++++++.+++. +..++.+..|||||||||+||++|+.+|++++|
T Consensus 95 ~~~~~-tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllL 171 (251)
T PRK14249 95 NPFPK-SIFDNVAFGPRMLG-T-TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILM 171 (251)
T ss_pred ccCcC-cHHHHHhhHHHhcC-C-ChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98885 99999998764321 1 11222345677788888864 457889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++. .++|+|+++|+. +++.++||++++|++|++++.|++++..
T Consensus 172 DEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 172 DEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNM-QQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCH-HHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999984 378999999975 5788999999999999999999988764
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=328.72 Aligned_cols=206 Identities=22% Similarity=0.391 Sum_probs=175.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+. + .+|+|.++|.++.. ...++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 45799999999999999999999999999999999998642 2 47999999998742 234677999999999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||+||+.+....+. .....+.++++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 98 ~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 98 PFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred cCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8885 99999998765321 112233445678888888874 3568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.+.+|++++|++|+++..|+++++.
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 99999999999999999999864 48999999975 4688899999999999999999988763
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=330.43 Aligned_cols=203 Identities=20% Similarity=0.361 Sum_probs=172.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~ 110 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+. +.+|+|.++|.++.. ..+++.++|++|++.+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 5699999999999999999999999999999999998642 368999999988631 2346789999999988
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
++. ||.||+.+....+ ... .+..+++.++++.+++. +..++.+++|||||||||+||+||+.+|++++|||
T Consensus 103 ~~~-tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 177 (264)
T PRK14243 103 FPK-SIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDE 177 (264)
T ss_pred ccc-cHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 884 9999998875432 111 12345567778888774 35678899999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc---------CCeEEEecChhHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC---------LGDLIYAGPTRLML 250 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~---------~G~~v~~G~~~~~~ 250 (606)
||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++|||+++|+ +|+++..|+++++.
T Consensus 178 Pt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 178 PCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred CCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999999999999999964 47999999975 57899999999998 79999999988874
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=331.11 Aligned_cols=207 Identities=22% Similarity=0.375 Sum_probs=173.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++.+|+|+|+++++||+++|+|+||||||||||+|+|+.+ + +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 35 ~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 114 (271)
T PRK14238 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP 114 (271)
T ss_pred CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence 34579999999999999999999999999999999999875 2 478999999988732 23467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC----CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA----LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg----L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++. ||.||+.++..... ...+...++.+.++++.++ +.+..++++++||||||||++||++|+.+|+++||
T Consensus 115 ~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllL 191 (271)
T PRK14238 115 NPFPK-SIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILM 191 (271)
T ss_pred ccccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88874 99999998754321 1122223445677777774 44567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 192 DEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 192 DEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNM-QQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999864 58999999975 4788999999999999999999987763
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.17 Aligned_cols=202 Identities=24% Similarity=0.376 Sum_probs=179.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP-PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 3579999999999999999999999999999999999987 7899999999887431 1 235699999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|++.+.... ..+.+++++++++.+++.+..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 102 tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~ 174 (510)
T PRK15439 102 SVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPA 174 (510)
T ss_pred cHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 999999875421 1234567889999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++..+.+.|+++++ .|+|||+++|++ +++.++||++++|++|++++.|++++..
T Consensus 175 ~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (510)
T PRK15439 175 ETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTIALSGKTADLS 228 (510)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecChHHcC
Confidence 99999999999976 489999999975 5788999999999999999999987653
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=329.57 Aligned_cols=200 Identities=25% Similarity=0.355 Sum_probs=175.6
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+ + +|+|.++|.++.. ...++.++|++|++.+++.+||.|
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 88 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ 88 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence 7999999999999999999999999999999999975 4 8999999998743 234567999999988888999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~-------~p~llllDEPTsgL 191 (606)
|+.+.... .....+..++++++++.+++.+..+++++.||||||||++||+||+. +|++++|||||+||
T Consensus 89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~L 164 (248)
T PRK03695 89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSL 164 (248)
T ss_pred HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccC
Confidence 99876321 12233345678899999999998999999999999999999999998 67999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+.++..+.+.|+++++ .|+|+|+++|+. +++.++||++++|++|+++..|+.+++
T Consensus 165 D~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 165 DVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999975 489999999975 468899999999999999999988765
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=333.50 Aligned_cols=205 Identities=22% Similarity=0.397 Sum_probs=175.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++.+|+|+|+++++||+++|+|||||||||||++|+|+.++ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 50 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~ 129 (285)
T PRK14254 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP 129 (285)
T ss_pred CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 345799999999999999999999999999999999999752 478999999988632 23567899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.+++. ||.||+.+....+ .... ...++++++++.+++. +..++++++|||||||||+||++|+.+|++++|
T Consensus 130 ~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLL 204 (285)
T PRK14254 130 NPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILM 204 (285)
T ss_pred ccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88885 9999998876532 1222 3456788999999984 467889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE-EEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA-YLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~-vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+++||++ +|++|+++..|++++..
T Consensus 205 DEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~-~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 205 DEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNM-QQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 999999999999999999999975 37999999975 57888999975 67999999999987753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=307.70 Aligned_cols=206 Identities=29% Similarity=0.419 Sum_probs=188.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++.+||.++++||||||||||||+++|... |..|+|.+||++++.. -..-|.|+|++.++|++||.||
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~-P~~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~dN 94 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT-PSRGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVIDN 94 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC-cccceEEECCEeccCC--CccceeEeccCccchhhHHHHH
Confidence 559999999999999999999999999999999999998 7899999999998642 3456899999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.|+.+++ ++.+.+..+++.+.+..+||.+..++++-+|||||||||.|||||+.+|++|+||||+.+||..+++++
T Consensus 95 vafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~m 171 (259)
T COG4525 95 VAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171 (259)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHH
Confidence 99999875 578888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHHH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLEY 252 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~~ 252 (606)
-++|-++++..|+.+++++|. .+++.=++++++||+. ||++..-+++-.+.|
T Consensus 172 QelLldlw~~tgk~~lliTH~-ieEAlflatrLvvlsp~pgRvv~~~~~df~rR~ 225 (259)
T COG4525 172 QELLLDLWQETGKQVLLITHD-IEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225 (259)
T ss_pred HHHHHHHHHHhCCeEEEEecc-HHHHHhhhheeEEecCCCceeeEecCCCHHHHh
Confidence 999999999999999999986 4678889999999985 799988777744444
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=325.88 Aligned_cols=206 Identities=21% Similarity=0.399 Sum_probs=175.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--C--CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--G--TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~--~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.. + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 3569999999999999999999999999999999999853 2 368999999998742 134678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. |+.||+.+..... ....+...++++.++++.+++. +..++.++.||||||||++||++|+.+|++++||
T Consensus 95 ~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 95 PFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred cCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 8885 9999998765421 1122333456788899999874 4568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+.+|++++|++|++++.|+++++.
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 99999999999999999999853 68999999976 5789999999999999999999988764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=326.26 Aligned_cols=206 Identities=25% Similarity=0.392 Sum_probs=173.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CC---CeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GT---TRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~---~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ .+ .+|+|.++|.++.. ...++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 3579999999999999999999999999999999999864 12 48999999998742 234678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++ .||.||+.+....+.. ..+....+++.+.++.+++. +..++.+++|||||||||+||++|+.+|++++||
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 173 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLD 173 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 888 6999999887543211 12222334567788888763 5568889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ +.|+|+++|++ +++.+.+|++++|++|+++..|++.+..
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 174 EPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999964 47999999976 5788999999999999999999988764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=328.25 Aligned_cols=209 Identities=23% Similarity=0.395 Sum_probs=176.8
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC------EeCC---cccccCeEEEEcC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG------TPMS---PQLFQTTCGYVNH 106 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G------~~~~---~~~~~~~i~yv~q 106 (606)
.++++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++| .++. ....++.++|++|
T Consensus 19 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q 97 (257)
T PRK14246 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97 (257)
T ss_pred ecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCceeEcCEEEECCcccccCCHHHHhcceEEEcc
Confidence 4455689999999999999999999999999999999999987 6666655554 4432 1235678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
++.+++.+||.||+.+...... ...+.+..+++.++++.+++. +..++.++.||||||||++||++|+.+|+++
T Consensus 98 ~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~ll 175 (257)
T PRK14246 98 QPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVL 175 (257)
T ss_pred CCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999998754321 122334556788999999996 4568899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|+++++ +.|+|+++|++ +.+.++||++++|++|+++..|+.++..
T Consensus 176 llDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~-~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 176 LMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999853 58999999985 4788999999999999999999988764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=361.16 Aligned_cols=208 Identities=17% Similarity=0.322 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++.+++.+
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ-KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4679999999999999999999999999999999999987 789999999998742 12456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.++............+..++++++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~ 168 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEK 168 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHH
Confidence 99999987642110111233344567889999999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
++.++.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|++++.
T Consensus 169 ~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 169 EVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999975 588999999875 578899999999999999999987664
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=324.51 Aligned_cols=198 Identities=25% Similarity=0.393 Sum_probs=168.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++. |
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~-t 96 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-T 96 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEcCcCCHHHHHhccEEEecccccccc-c
Confidence 3579999999999999999999999999999999999987 789999999987642 2346789999999988874 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|+||+.+....+. .. ...++++++++.+++. ...+++++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 97 v~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (225)
T PRK10247 97 VYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171 (225)
T ss_pred HHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 9999988654321 11 1235678899999996 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc-CCeEEEecC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC-LGDLIYAGP 245 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~-~G~~v~~G~ 245 (606)
++..+.+.|++++++.|.|+|+++|++. ++ +.||++++|+ ++..+.+|.
T Consensus 172 ~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 172 NKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHhhhh
Confidence 9999999999998766889999999864 45 5799999995 455555554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=330.65 Aligned_cols=202 Identities=26% Similarity=0.417 Sum_probs=166.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 93 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD-PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTI 93 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hhH
Confidence 469999999999999999999999999999999999987 789999999988642 234567999999988876 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNA-----RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+|++.+.... ....+..+ .+.++++.+ ++....++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 94 ~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 168 (238)
T cd03249 94 AENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATS 168 (238)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999875321 11111111 123333444 55556677889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
|||+.++.++.+.|++++ .|+|+|+++|++. ++. .||++++|++|++++.|+.+++.+.
T Consensus 169 gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~-~~~-~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 169 ALDAESEKLVQEALDRAM--KGRTTIVIAHRLS-TIR-NADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred cCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHH-HHh-hCCEEEEEECCEEEEeCCHHHHhhc
Confidence 999999999999999985 4899999999864 554 8999999999999999998776543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=328.08 Aligned_cols=205 Identities=20% Similarity=0.369 Sum_probs=175.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 446799999999999999999999999999999999999863 268999999998642 13467799999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.++ .+|+.||+.+....+. . ..+..++++++++.+++.+ ..++.++.||||||||++||+||+.+|++++|
T Consensus 99 ~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLL 173 (261)
T ss_pred ccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 887 5999999998765321 1 2233467889999999854 34677899999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc--------CCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC--------LGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~--------~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++.++.+.|++++ + ++|+|+++|++ +++.++|||+++|+ +|+++..|+.+++.
T Consensus 174 DEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~-~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 174 DEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNM-QQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCH-HHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 99999999999999999999985 3 68999999975 46889999999996 89999999988764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=329.06 Aligned_cols=201 Identities=27% Similarity=0.429 Sum_probs=169.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 15 PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD-VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc-CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 369999999999999999999999999999999999987 789999999987642 234677999999998886 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+.+.... ....... ..+.++++.+ ++.+..++++..||||||||++||+||+.+|++++|||||+
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 167 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATS 167 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999875421 1111111 1245566666 67777788899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++ + +.|+|+++|++. ++.. ||++++|++|+++..|+.+++.+
T Consensus 168 ~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 168 ALDTESERLVQAALERLM-K-NRTTFVIAHRLS-TIEN-ADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HHhh-CCEEEEecCCeEeeeCCHHHHHH
Confidence 999999999999999985 3 789999999874 5654 99999999999999999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=329.75 Aligned_cols=204 Identities=21% Similarity=0.365 Sum_probs=173.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 32 ~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 32 GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 35799999999999999999999999999999999998752 258999999988632 235678999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+++. ||.||+.+....+ ... ....+.+++.++.+++ .+..++++..|||||||||+||+||+.+|+++|||
T Consensus 112 l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 186 (274)
T PRK14265 112 PFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD 186 (274)
T ss_pred cccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 8875 9999998865432 111 1223456777888876 35678889999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc---------CCeEEEecChhHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC---------LGDLIYAGPTRLML 250 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~---------~G~~v~~G~~~~~~ 250 (606)
|||+|||+.++..+.+.|+++++ ++|||+++|++ +++.++||++++|+ +|++++.|+++++.
T Consensus 187 EPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 187 EPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM-QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 99999999999999999999863 58999999976 47889999999998 89999999998874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=367.68 Aligned_cols=207 Identities=23% Similarity=0.359 Sum_probs=182.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~--~~~ 111 (606)
+.+|+||||+|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE-SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 469999999999999999999999999999999999987 789999999998742 12466899999997 589
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||.|++.+....+. ...+.+..+++.++|+.+||. +..++++++|||||||||+||+||+.+|++|||||||+|
T Consensus 416 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~ 493 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSA 493 (623)
T ss_pred CCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999988764321 112344557789999999996 678999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++.++.++|++++++.|.|+|+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 494 LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 494 LDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVERISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999876689999999975 5788999999999999999999998874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=312.89 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=181.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
..+.+|+++|++++||||++|+||||||||||||.|+|.+. +.+|++.+||.+++. ....+.-+.++|+..+-...
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~-p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS-PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC-CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 34679999999999999999999999999999999999987 789999999998864 23456678899998876668
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK------DPVLLLLDEPT 188 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~------~p~llllDEPT 188 (606)
||+|-+.++..-... .....+..+.++++|+..++.+...+....|||||||||.+||.|++ ++++|+|||||
T Consensus 91 tv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPt 169 (259)
T COG4559 91 TVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPT 169 (259)
T ss_pred EHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCc
Confidence 999999998652211 11222445568899999999999999999999999999999999986 44589999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.||...+...+++.|+++++ |..|+++.|+ .+-...+||||++|++||++..|++++++.
T Consensus 170 saLDi~HQ~~tl~laR~la~~-g~~V~~VLHD-LNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 170 SALDIAHQHHTLRLARQLARE-GGAVLAVLHD-LNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred cccchHHHHHHHHHHHHHHhc-CCcEEEEEcc-chHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 999999999999999999985 6888888886 467899999999999999999999998864
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=322.27 Aligned_cols=194 Identities=23% Similarity=0.348 Sum_probs=167.0
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++.+++|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.+... . .+...+.+.+|
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~G~i~~~g~~~~~--~-------~~~~~~~~~~t 100 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-PDSGTVTVRGRVSSL--L-------GLGGGFNPELT 100 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEchh--h-------cccccCCCCCc
Confidence 4556789999999999999999999999999999999999987 789999999987531 1 11234567899
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|+||+.+..... .....+.++++.++++.+++.+..++.+++||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 101 v~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 101 GRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 999998876532 12334445678889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|++++++ ++|+|+++|++ +++.+++|++++|++|+++..|
T Consensus 178 ~~~~~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 178 QEKCQRRLRELLKQ-GKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999998764 88999999975 5788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-39 Score=394.09 Aligned_cols=209 Identities=24% Similarity=0.368 Sum_probs=190.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+.+|+|+|+.|++||+++|+||||||||||+|+|+|..+ +++|+|.++|.++.. ...++.+||++|++.+++.+||+
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~-ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~ 2030 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT-VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGR 2030 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHH
Confidence 579999999999999999999999999999999999988 789999999998743 23567899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|++.+.++++ +.++++.+++++++++.++|.+..|+++++|||||||||+||+||+.+|+|++|||||+|||+.++.
T Consensus 2031 E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~ 2107 (2272)
T TIGR01257 2031 EHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARR 2107 (2272)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHH
Confidence 9999877654 2344455667889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFR 254 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~ 254 (606)
.+++.|++++++ |+|||+++|+ .+++..+||||++|.+|+++..|++++++..|.
T Consensus 2108 ~l~~lL~~l~~~-g~TIILtTH~-mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2108 MLWNTIVSIIRE-GRAVVLTSHS-MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred HHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEECCHHHHHHHhC
Confidence 999999999764 8999999997 468999999999999999999999999988763
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=330.74 Aligned_cols=206 Identities=23% Similarity=0.384 Sum_probs=172.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV~ 117 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.....++.++|++|++.+. ...+++
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR-LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 569999999999999999999999999999999999987 78999999999875322234699999997652 235789
Q ss_pred HHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+++.++...... ........+++++++++.+|+.+..+++++.||||||||++||+||+.+|++++|||||+|||+.++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 988654211000 0111223345678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
..+.+.|+++++ .|+|+|+++|++ +++.++||+++++ +|+++..|+++++
T Consensus 179 ~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 179 ARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 999999999975 488999999975 5788999999877 8999999988765
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=314.94 Aligned_cols=171 Identities=36% Similarity=0.672 Sum_probs=155.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC--CCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS--SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~--~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+. + +.+|+|.++|+++.....++.++|++|++.+++.+|++
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL-GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVR 100 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHH
Confidence 57999999999999999999999999999999999998 6 78999999999886544667899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..+.. .||||||||++||+||+.+|+++++||||+|||+.++.
T Consensus 101 ~~i~~~~~~~--------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~ 148 (194)
T cd03213 101 ETLMFAAKLR--------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148 (194)
T ss_pred HHHHHHHHhc--------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHH
Confidence 9997653210 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+.+.|+++++ .++|+|+++|++..++.++||++++|++|++++.|
T Consensus 149 ~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 149 QVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999875 48999999998765788899999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=306.00 Aligned_cols=210 Identities=24% Similarity=0.373 Sum_probs=187.3
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQT 99 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~ 99 (606)
.++...+||+||+..++|+++.|+|.|||||||+||||.-+.. |..|.|.+||..+.- +.+|.
T Consensus 15 ~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~-P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 15 RYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK-PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred hcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC-CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 3445689999999999999999999999999999999987766 789999999987521 12566
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCC
Q psy10223 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDP 179 (606)
Q Consensus 100 ~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p 179 (606)
+.++|+|..++++++||.||+.-+..-- -+.++.+..++++.+|+++|+.+..+.++..|||||+||++|||||+.+|
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP 171 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP 171 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence 7999999999999999999997764321 24678888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+++++|||||+|||.-.-++++.++++|++ |+|.++++|. ...+.+...+|++|++|.+-+.|+++++.
T Consensus 172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeE-grTMv~VTHE-M~FAR~Vss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEE-GRTMVVVTHE-MGFARDVSSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred ceEeecCCcccCCHHHHHHHHHHHHHHHHh-CCeEEEEeee-hhHHHhhhhheEEeecceecccCChHHHh
Confidence 999999999999999999999999999974 8999999885 56788899999999999999999999874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=358.97 Aligned_cols=210 Identities=27% Similarity=0.370 Sum_probs=180.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEEC-----------------------CEeCC-
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILD-----------------------GTPMS- 93 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~-----------------------G~~~~- 93 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ .+.+|+|.++ |.++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 4579999999999999999999999999999999999962 3788999997 22210
Q ss_pred ---------c---ccccCeEEEEcCC-CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCC
Q psy10223 94 ---------P---QLFQTTCGYVNHR-TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160 (606)
Q Consensus 94 ---------~---~~~~~~i~yv~q~-~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 160 (606)
. ...++.++|++|+ +.+++.+||.|++.+..... ..+..+.++++.++++.+||++..++++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 168 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRAVDLIEMVQLSHRITHIARD 168 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCccc
Confidence 0 1235679999997 67889999999999876432 233445567889999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 161 LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+++|++ +.+.++||++++|++|++
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i 247 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP-EVIEDLSDKAIWLENGEI 247 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999776689999999975 567889999999999999
Q ss_pred EEecChhHHHHH
Q psy10223 241 IYAGPTRLMLEY 252 (606)
Q Consensus 241 v~~G~~~~~~~~ 252 (606)
++.|++++..+.
T Consensus 248 ~~~g~~~~~~~~ 259 (520)
T TIGR03269 248 KEEGTPDEVVAV 259 (520)
T ss_pred eeecCHHHHHHH
Confidence 999998877554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=317.90 Aligned_cols=190 Identities=24% Similarity=0.318 Sum_probs=167.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+++|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.....++.++|++|++.+++.+|+.|
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 23 EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH-VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 3569999999999999999999999999999999999987 788999999998764334557999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+....+ ... ..++++++++.+++.+..+++++.|||||||||+||++++.+|++++|||||+|||+.++..
T Consensus 102 ~l~~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (214)
T PRK13543 102 NLHFLCGLH---GRR---AKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175 (214)
T ss_pred HHHHHHHhc---CCc---HHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 998875432 111 23456788999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+.+.|+++++ .|+|+|+++|++ +++.++||++++|+.
T Consensus 176 l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 176 VNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 9999999876 478999999976 579999999999863
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=348.34 Aligned_cols=209 Identities=29% Similarity=0.411 Sum_probs=186.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC---CeeEEEECCEeCCc---c---c-ccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSP---Q---L-FQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~---~~G~I~~~G~~~~~---~---~-~~~~i~yv~q~~~ 109 (606)
..+++||||++++||++||+|.|||||||+.++|.|+++.. .+|+|.++|.++.. + . ..+.|+|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 47999999999999999999999999999999999998743 47999999987532 1 1 3467999999974
Q ss_pred --CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc--cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 110 --LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 110 --~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+.|-+|+.+.+.-....+.. .++++.++++.++|+.+||.+.... ++++|||||||||.||+||+.+|++|++|
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaD 179 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD 179 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEEC
Confidence 77889999999887776532 3477888899999999999876554 99999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++.+|+++|+++.++.|.++|+++|++ .-+.++||||+||++|++++.|+++++..
T Consensus 180 EPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRVVVMYKGEIVETGPTEEILS 244 (539)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999999999975 57999999999999999999999999875
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=315.57 Aligned_cols=188 Identities=21% Similarity=0.386 Sum_probs=165.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR-PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 3579999999999999999999999999999999999987 789999999988743 2356789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.||+.+..... .. ...++++++++.+|+.+..+++++.||||||||++||+||+++|++++|||||+|||+.++
T Consensus 92 ~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 165 (204)
T PRK13538 92 LENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165 (204)
T ss_pred HHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 99998876432 11 2345688999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
..+.+.|+++++ .+.|+|+++|++ +++..+-+|++++
T Consensus 166 ~~l~~~l~~~~~-~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 166 ARLEALLAQHAE-QGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCh-hhhccCCceEEec
Confidence 999999999875 478999999986 4666667777776
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=313.05 Aligned_cols=171 Identities=37% Similarity=0.672 Sum_probs=153.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.. ++.+|+|.++|.++. ...++.++|++|++.+++.+||+|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHH
Confidence 579999999999999999999999999999999999853 367899999999875 345678999999999999999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.++... + .|||||||||+||+||+.+|+++++||||+|||+.++..
T Consensus 99 ~l~~~~~~---------------~-----------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~ 146 (192)
T cd03232 99 ALRFSALL---------------R-----------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYN 146 (192)
T ss_pred HHHHHHHH---------------h-----------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHH
Confidence 99875321 0 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEEEec
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLIYAG 244 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v~~G 244 (606)
+.+.|+++++ .|+|+|+++|++..++.+.||++++|++ |++++.|
T Consensus 147 l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 147 IVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999875 4899999999875457889999999999 9999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=357.23 Aligned_cols=205 Identities=22% Similarity=0.371 Sum_probs=178.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ-PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 3579999999999999999999999999999999999987 789999999998742 12467899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+.++............+.++++.++++.+|+.+..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 95 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 174 (501)
T PRK11288 95 TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAR 174 (501)
T ss_pred CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHH
Confidence 99999988642111111233445567889999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
++..+.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..++.
T Consensus 175 ~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 175 EIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999975 589999999975 578899999999999999876653
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=324.23 Aligned_cols=201 Identities=24% Similarity=0.409 Sum_probs=165.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++. ||
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 93 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD-PQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TI 93 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhh-HH
Confidence 469999999999999999999999999999999999987 789999999987642 2356779999999988876 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNA-----RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+.+.... .......+ .+.+.++.+ ++....++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 94 ~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~ 168 (229)
T cd03254 94 MENIRLGRPN-----ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATS 168 (229)
T ss_pred HHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999875321 11111111 122334443 55555667789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|++++ + ++|+|+++|++. ++ +.||++++|++|++++.|+.++..+
T Consensus 169 ~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 169 NIDTETEKLIQEALEKLM-K-GRTSIIIAHRLS-TI-KNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred cCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHH-HH-hhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999985 3 789999999874 45 4699999999999999998776543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=356.54 Aligned_cols=209 Identities=23% Similarity=0.381 Sum_probs=178.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~ 113 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.++ +.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 13 ~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 45799999999999999999999999999999999999863 3689999999987531 134679999999999999
Q ss_pred CCHHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCchhh-cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVA-RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+||.||+.+........ ....++..++++++++.+++.+.. ++++++|||||||||+||+||+.+|++++|||||+||
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~L 172 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSL 172 (500)
T ss_pred CcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999998865422110 123334456788999999998765 5779999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+.++..+.+.|+++++ .|+|||+++|+. +++.++||++++|++|+++..|++++.
T Consensus 173 D~~~~~~l~~~l~~l~~-~g~tviiitHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 173 TEKETEILLDIIRDLKA-HGVACVYISHKL-NEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999975 589999999875 578899999999999999999887643
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=348.27 Aligned_cols=208 Identities=27% Similarity=0.402 Sum_probs=184.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC--Cc---ccccCeEEEEcCCC--CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM--SP---QLFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~--~~---~~~~~~i~yv~q~~--~~~ 111 (606)
...+++||||++++||+++|+|+||||||||.|+|+|+.+ |.+|+|.++|.+. +. ...|+++-+++|++ .+.
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccC
Confidence 4579999999999999999999999999999999999998 6899999999773 21 22455666666665 599
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
|.+||++.+......... ....+.++++.++++.+||.. .+++++++||||||||++|||||+.+|+++++|||||.
T Consensus 382 Pr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~Sa 459 (539)
T COG1123 382 PRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSA 459 (539)
T ss_pred ccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccc
Confidence 999999999988875432 234566778999999999987 79999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+..+.+++++|+++.++.|.|.++++|+ ..-+..+||||+||++|++|+.||++++.
T Consensus 460 LDvsvqa~VlnLl~~lq~e~g~t~lfISHD-l~vV~~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 460 LDVSVQAQVLNLLKDLQEELGLTYLFISHD-LAVVRYIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCEEEEEeCC-HHHHHhhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999986 56899999999999999999999888774
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=356.85 Aligned_cols=206 Identities=24% Similarity=0.402 Sum_probs=178.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC-CEe---CCc------ccccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD-GTP---MSP------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~-G~~---~~~------~~~~~~i~yv~q~~~ 109 (606)
+++|+|+||++++||+++|+||||||||||||+|+|+.+ +.+|+|.++ |.+ +.. ...++.++|++|++.
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE-PTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 569999999999999999999999999999999999987 789999996 532 211 123567999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+++.+||.|++.+..... .++...+++++++++.+++.+ ..++++++|||||||||+||+||+.+|++|+|
T Consensus 376 l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLll 451 (520)
T TIGR03269 376 LYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451 (520)
T ss_pred cCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998765321 233334567889999999975 57899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++..+.+.|++++++.|.|+|+++|++ +.+.++||++++|++|+++..|+++++.+
T Consensus 452 DEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 452 DEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999876689999999975 57889999999999999999999887643
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=363.29 Aligned_cols=207 Identities=21% Similarity=0.318 Sum_probs=180.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC-------------cc---ccc-CeEE
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------------PQ---LFQ-TTCG 102 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~-------------~~---~~~-~~i~ 102 (606)
+++|+||||++++||+++|+||||||||||||+|+|+++ +.+|+|.++|..+. .. ..| +.++
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig 107 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE-QAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA 107 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE
Confidence 579999999999999999999999999999999999987 78899999986431 11 122 4799
Q ss_pred EEcCCC--CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc---hhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 103 YVNHRT--DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS---NVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 103 yv~q~~--~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
||+|++ .++|.+||.|++.++.+... ..++.+.++++.++++.+||. +..++++++|||||||||+||+||+.
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC
Confidence 999997 68899999999999875421 234555667889999999995 46789999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|++|||||||+|||+.++.++.++|++++++.|+|||+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 186 ~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999999999999999876689999999864 5788999999999999999999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=320.15 Aligned_cols=190 Identities=25% Similarity=0.430 Sum_probs=162.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 94 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK-PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTL 94 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-chH
Confidence 469999999999999999999999999999999999987 788999999987642 234568999999998887 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC-----------CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI-----------SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-----------~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
.|++.+... ... .+++.++++.+++.+..++.+ .+|||||||||+||++|+.+|++++||
T Consensus 95 ~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD 165 (220)
T cd03245 95 RDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD 165 (220)
T ss_pred HHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999876421 111 234567888888887776644 699999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
|||+|||+.++..+.+.|+++++ ++|+|+++|++. .+ ++||++++|++|++++.|
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 166 EPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 99999999999999999999865 389999999864 44 799999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=357.50 Aligned_cols=207 Identities=26% Similarity=0.424 Sum_probs=180.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCC--CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRT--DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~--~~~ 111 (606)
+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ .+|+|.++|.++.. . .+++.++|++|++ .++
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~ 376 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN--SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLN 376 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcC
Confidence 579999999999999999999999999999999999974 68999999987642 1 1356799999996 488
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+.+||.|++.++...+. ...+..+.+++++++++.+++. +..++++++|||||||||+||+||+.+|++++|||||+|
T Consensus 377 ~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 377 PRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred CcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 99999999988754321 1123344456788999999997 578999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++..+.+.|++++++.|+|||+++|+. +++.++||++++|++|+++..|+++++.
T Consensus 456 LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVVRALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999876689999999975 5788999999999999999999988764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=313.23 Aligned_cols=185 Identities=24% Similarity=0.387 Sum_probs=164.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 4579999999999999999999999999999999999987 789999999988642 2356789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.... . ..++++++++.+++.+..+++++.||||||||++||++|+.+|++++|||||+|||+.++
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~ 161 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGV 161 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 9999875321 1 235678899999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.++.+.|+++.+ .|+|+|+++|++. ++.+.+|+++++
T Consensus 162 ~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 162 ARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 999999999875 4889999999875 678899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=310.89 Aligned_cols=178 Identities=26% Similarity=0.418 Sum_probs=154.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCC-CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD-LIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~-~~~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++. .+.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR-PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3569999999999999999999999999999999999987 789999999988741 124567999999973 333
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
..||+||+.+..... ..+..+..+++.++++.+++.+..++++++|||||||||+||+||+.+|++++|||||+|||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 579999999875422 23344455678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
+.++..+.+.|+++++ .|+|+|+++|++
T Consensus 160 ~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 160 PAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 9999999999999975 488999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=322.67 Aligned_cols=196 Identities=28% Similarity=0.413 Sum_probs=178.7
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++++..+.--++||-|+||||||||+|+|+|+.+ |++|.|.+||..+.+ ...++++|||+||..+||++||+
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r-PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr 94 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTR-PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR 94 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCC-ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence 7888887757999999999999999999999998 899999999987632 12578999999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
.||.|+.... .....+++.+.+|++|..++++..|||||||||+|+|||+++|++|+||||.+.||...+.
T Consensus 95 gNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~ 165 (352)
T COG4148 95 GNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165 (352)
T ss_pred cchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhh
Confidence 9999987521 2345788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+++-.|.+++++.+.-|+.++|. .+|+.+++|+|++|++|++..+|+.+++.+
T Consensus 166 EilpylERL~~e~~IPIlYVSHS-~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 166 EILPYLERLRDEINIPILYVSHS-LDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEecC-HHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999989999999986 579999999999999999999999998864
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=322.93 Aligned_cols=200 Identities=24% Similarity=0.390 Sum_probs=165.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 14 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 91 (236)
T cd03253 14 RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTI 91 (236)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhc-chH
Confidence 469999999999999999999999999999999999987 789999999988642 235667999999998886 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHH-----HHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNA-----RIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.||+.+... ........+ .+.+.++.+ ++....++.++.|||||||||+||++|+.+|++++|||||+
T Consensus 92 ~~nl~~~~~-----~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~ 166 (236)
T cd03253 92 GYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATS 166 (236)
T ss_pred HHHHhhcCC-----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999987532 112111111 123334444 55555677789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||+.++..+.+.|+++++ |+|+|+++|++. .+. .||++++|++|+++..|+.++..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~-~~~-~~d~~~~l~~g~i~~~~~~~~~~ 223 (236)
T cd03253 167 ALDTHTEREIQAALRDVSK--GRTTIVIAHRLS-TIV-NADKIIVLKDGRIVERGTHEELL 223 (236)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHH-HHH-hCCEEEEEECCEEEeeCCHHHHh
Confidence 9999999999999999864 789999999864 554 59999999999999999877654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=354.98 Aligned_cols=208 Identities=25% Similarity=0.335 Sum_probs=179.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCcc------ccc-CeEEEEcCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSPQ------LFQ-TTCGYVNHRT 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~~------~~~-~~i~yv~q~~ 108 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..++ +++|+|.++|.++... ..+ +.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 5799999999999999999999999999999999999873 2689999999987421 122 5799999997
Q ss_pred C--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 109 D--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 109 ~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
. +++.+||+|++.+..... ...++.+..++++++++.+||.+ ..++++++|||||||||+||+||+.+|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 4 678899999988654321 12344455678899999999975 4689999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|||||+|||+.++.++.+.|++++++.|.|+|+++|++ +.+.++||||++|++|++++.|+++++.
T Consensus 180 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 180 ADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKLADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999876689999999975 5788899999999999999999987764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=322.98 Aligned_cols=191 Identities=26% Similarity=0.414 Sum_probs=166.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC--CH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL--TV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l--TV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| +..++|++|++.+++.+ |+
T Consensus 16 ~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~~--------~~~i~~v~q~~~~~~~l~~~~ 86 (251)
T PRK09544 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA-PDEGVIKRNG--------KLRIGYVPQKLYLDTTLPLTV 86 (251)
T ss_pred CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECC--------ccCEEEeccccccccccChhH
Confidence 3569999999999999999999999999999999999987 7899999986 23699999998877764 77
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.+++.+.. ... .+++.++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 87 ~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 156 (251)
T PRK09544 87 NRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQ 156 (251)
T ss_pred HHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 77664311 111 24578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
..+.+.|++++++.|+|+|+++|++ +++.+.||++++|+ |+++..|+++++.
T Consensus 157 ~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~-~~i~~~g~~~~~~ 208 (251)
T PRK09544 157 VALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLN-HHICCSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEC-CceEeeCCHHHHh
Confidence 9999999999765588999999975 57889999999996 4799999987753
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=318.82 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=171.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc---cc-ccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP---QL-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~---~~-~~~~i~yv~q~~~~~~~ 113 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ .+.+|+|.++|.++.. .. .++.++|++|++.+++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 3569999999999999999999999999999999999952 3788999999987642 11 23569999999999998
Q ss_pred CCHHHHHHHHHH-ccCCC---CCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 114 LTVEQTLYYAAH-LSIGP---QVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 114 lTV~e~l~f~~~-~~~~~---~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+|+.+++.+... ..... ........++++++++.+++. +..++.+. .|||||||||+||+||+.+|++++||||
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEP 172 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDES 172 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 888777654321 11000 011223345678889999995 56677775 7999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .++|+|+++|++. .+... +|++++|++|++++.|+.+.+.
T Consensus 173 t~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 173 DSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred CccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999875 4789999999864 55555 8999999999999999988653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=328.93 Aligned_cols=209 Identities=22% Similarity=0.366 Sum_probs=174.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~ 108 (606)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|+.++ +.+|+|.++|.++.. ...++.++|++|++
T Consensus 56 ~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 135 (305)
T PRK14264 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135 (305)
T ss_pred CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence 346799999999999999999999999999999999999752 478999999988642 13467899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCC---------CCCC-HHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHH
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIG---------PQVS-RYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQ 174 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~---------~~~~-~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~a 174 (606)
.+++ .||+||+.+....... .... .....+++.++++.+++. +..++.+++|||||||||+||+|
T Consensus 136 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAra 214 (305)
T PRK14264 136 NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARC 214 (305)
T ss_pred cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHH
Confidence 8887 4999999987542100 0011 122346688899999874 45688899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE-EEEcCCeEEEecChhHHH
Q psy10223 175 LVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT-AYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 175 L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v-~vL~~G~~v~~G~~~~~~ 250 (606)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|+|+++|++ +.+.++||++ ++|++|+++..|+++++.
T Consensus 215 L~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 215 LAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-QQAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999975 37999999976 4688999997 578999999999987764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=331.63 Aligned_cols=205 Identities=22% Similarity=0.377 Sum_probs=175.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCCc-----ccccCeEEEEcCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMSP-----QLFQTTCGYVNHRTD 109 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~ 109 (606)
.+++|+|+|++|++||+++|+|||||||||||++|+|..+. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 35699999999999999999999999999999999998752 468999999999852 235778999999998
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCH-HHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSR-YVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+++ .|++||+.|+.... .... +...+.++++++.++|. ...++++..|||||||||+|||||+.+|+|++|
T Consensus 174 ~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLL 249 (329)
T PRK14257 174 PFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLM 249 (329)
T ss_pred cCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 885 79999999875421 1222 22334567888888773 456788999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.+...+.+.|+++.+ ++|+|+++|++ +.+.++||||++|++|+++..|+++++.
T Consensus 250 DEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 250 DEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999864 58999999985 5788899999999999999999999875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=388.46 Aligned_cols=208 Identities=21% Similarity=0.375 Sum_probs=189.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.++|.++.. ...|+.+||++|++.+++.+||
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~-PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV 1020 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP-PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTV 1020 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC-CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCH
Confidence 4679999999999999999999999999999999999988 789999999998753 2357789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+|++.+.++++ +.+.++.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 1021 ~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr 1097 (2272)
T TIGR01257 1021 AEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSR 1097 (2272)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 99999987754 233445567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
..++++|++++ .|+|||+++|+. +++..++|||++|++|+++..|++.++++.|
T Consensus 1098 ~~l~~lL~~l~--~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1098 RSIWDLLLKYR--SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYCSGTPLFLKNCF 1151 (2272)
T ss_pred HHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEecCHHHHHHhc
Confidence 99999999984 389999999975 5788999999999999999999999998765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.39 Aligned_cols=209 Identities=22% Similarity=0.361 Sum_probs=178.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~ 111 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+++.+|+|.++|+++.. ...++.++|++|++ .++
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35699999999999999999999999999999999999863478999999988642 12356799999995 478
Q ss_pred CCCCHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+.+||.||+.+........ ...+.+.+++++++++.+++. +..+++++.|||||||||+||+||+.+|++|+|||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 8999999998764211100 112334456789999999996 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++.++.++|+++++ .|+|||+++|+. +++.++||++++|++|+++..|+++++
T Consensus 434 ~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 434 RGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred CCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999986 489999999975 578999999999999999999887654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=321.72 Aligned_cols=205 Identities=27% Similarity=0.426 Sum_probs=173.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC----CCeeEEEECCEeCC---c----ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG----TTRGEIILDGTPMS---P----QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~----~~~G~I~~~G~~~~---~----~~~~~~i~yv~q~ 107 (606)
++.+|+|+|+++++||+++|+|+||||||||||+|+|+.++ +.+|+|.++|.++. . ...++.++|++|+
T Consensus 28 ~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 107 (265)
T PRK14252 28 GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK 107 (265)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence 45799999999999999999999999999999999999762 16899999997653 1 2346789999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCC-HHHHHHHHHHHHHHcCCc----hhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVS-RYVRNARIRQVLADLALS----NVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~----~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
+.+++. ||.||+.+..... ... +...++++.++++.+++. +..++.+..|||||||||+||++|+.+|+++
T Consensus 108 ~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 183 (265)
T PRK14252 108 PNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEIL 183 (265)
T ss_pred CcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 998986 9999998875422 122 222345677888888763 4567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.++..+.+.|+++++ ++|+|+++|++ +++.++||++++|++|+++..|+.++..
T Consensus 184 llDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 184 LFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNM-QQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999864 58999998875 5788999999999999999999987763
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=303.72 Aligned_cols=159 Identities=32% Similarity=0.499 Sum_probs=145.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|+.
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 91 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVR 91 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHH
Confidence 469999999999999999999999999999999999987 789999999988753 23567899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+. ||||||||++||+||+.+|+++++||||+|||+.++.
T Consensus 92 ~~~~---------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~ 132 (173)
T cd03230 92 ENLK---------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132 (173)
T ss_pred HHhh---------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 9873 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.+.+.|++++++ |.|+|+++|++ +++.+.+|++++|++|++
T Consensus 133 ~l~~~l~~~~~~-g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 133 EFWELLRELKKE-GKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHC-CCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 999999999875 88999999976 478889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=361.72 Aligned_cols=198 Identities=19% Similarity=0.332 Sum_probs=166.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++++|+|+|++++|||.+||+||||||||||+++|+|.. |.+|+|.+||.++.+ +.+|+.++||+|++.+|+.
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~- 437 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHG- 437 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCc-
Confidence 3467999999999999999999999999999999999998 468999999998753 4578899999999999976
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-----------SNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
|++||+.++.. +.+++ ++.++++..++ +....+....||||||||++|||||+++|++++
T Consensus 438 TI~eNI~~g~~-----~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Ili 508 (588)
T PRK11174 438 TLRDNVLLGNP-----DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLL 508 (588)
T ss_pred CHHHHhhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988631 23332 34444444443 332333345799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||||+||+.+...+.+.|+++. .++|+|+++|++ +..+.+|+|++|++|+++..|+.+++.+
T Consensus 509 LDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iivl~~G~i~e~G~~~eL~~ 572 (588)
T PRK11174 509 LDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWVMQDGQIVQQGDYAELSQ 572 (588)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEEEeCCeEeecCCHHHHHh
Confidence 999999999999999999999885 478999999987 4567899999999999999999888764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=316.20 Aligned_cols=197 Identities=27% Similarity=0.420 Sum_probs=167.4
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCHHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTVEQTLYYAAH 125 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV~e~l~f~~~ 125 (606)
+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++. ..++.++|++|++.++ ..+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP-PAKGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4689999999999999999999999999987 78999999998764 2456799999998764 34899999987532
Q ss_pred ccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy10223 126 LSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 126 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 204 (606)
.... .........+++.++++.+++++..++++++|||||||||+||++|+.+|+++++||||+|||+.++..+.+.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1100 001122334568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 205 ~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
++++ .|+|+|+++|++ +++.++||+++++ +|++++.|+.++..
T Consensus 158 ~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 158 ELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9875 489999999986 4788999999999 89999999987763
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=306.75 Aligned_cols=216 Identities=22% Similarity=0.364 Sum_probs=194.1
Q ss_pred eeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC
Q psy10223 33 VFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD 109 (606)
Q Consensus 33 ~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~ 109 (606)
+.+.++++.+|+|+|+++++|.+++++|||||||||||.+++.+.+ .++|+|+++|.++.. +.+.+.++.+-|+..
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~ 85 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK-KDSGEITIDGLELTSTPSKELAKKLSILKQENH 85 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc-ccCceEEEeeeecccCChHHHHHHHHHHHhhch
Confidence 3446677899999999999999999999999999999999999887 789999999999854 346677888899999
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.-..+||+|-+.|+..-. ..+...++.+..++++++.++|++..|++..+||||||||.-||..++++.+.++||||.+
T Consensus 86 i~~rlTV~dLv~FGRfPY-SqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLN 164 (252)
T COG4604 86 INSRLTVRDLVGFGRFPY-SQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLN 164 (252)
T ss_pred hhheeEHHHHhhcCCCcc-cCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCccc
Confidence 999999999999974321 2233445677889999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+||-..+.++++.||+++++.|+||+++.|+. ..+..++|+++-|++|+++..|+++++.+
T Consensus 165 NLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv~~G~~~eii~ 225 (252)
T COG4604 165 NLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVVKQGSPDEIIQ 225 (252)
T ss_pred ccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEEecCCHHHhcC
Confidence 99999999999999999999999999999974 57888999999999999999999998864
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=332.32 Aligned_cols=189 Identities=24% Similarity=0.383 Sum_probs=168.9
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q psy10223 58 VLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV 136 (606)
Q Consensus 58 IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~ 136 (606)
|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.++|++||.||+.|+.+.+ ..++.+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ-PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC-CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence 689999999999999999987 789999999998753 223567999999999999999999999986532 234444
Q ss_pred HHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q psy10223 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216 (606)
Q Consensus 137 ~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~ 216 (606)
.+++++++++.++|.+..++++++|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.++.|+|+|+
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiii 156 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVF 156 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 56678999999999999999999999999999999999999999999999999999999999999999998767899999
Q ss_pred EecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 217 t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++|++ +++.++|||+++|++|+++..|+++++.+
T Consensus 157 vTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 157 VTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred EeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99975 57899999999999999999999988753
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=318.03 Aligned_cols=198 Identities=19% Similarity=0.264 Sum_probs=173.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
..+++|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|. ++++.|+..+.+.+|+.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~-p~~G~I~~~g~----------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS-PTVGKVDRNGE----------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC-CCceEEEECCE----------EeEEecccCCCCCCcHH
Confidence 45689999999999999999999999999999999999987 78899999985 34566666677889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+.+..... ....++..+.+.++++.+++.+..++.++.|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 104 enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~ 180 (264)
T PRK13546 104 ENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQ 180 (264)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHH
Confidence 9998765432 2234444556778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|+++++ .|+|+|+++|+. .++.+++|++++|++|+++..|+.+++.+
T Consensus 181 ~l~~~L~~~~~-~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 181 KCLDKIYEFKE-QNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHHHHHH-CCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999865 588999999975 47888999999999999999999887754
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=337.53 Aligned_cols=198 Identities=17% Similarity=0.290 Sum_probs=171.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+||++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.+. .++ +...+.+.+||+|+
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~-P~sGeI~I~G~~~-------~i~---~~~~l~~~lTV~En 105 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM-PNKGTVDIKGSAA-------LIA---ISSGLNGQLTGIEN 105 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC-CCceEEEECCEee-------eEE---eccccCCCCcHHHH
Confidence 579999999999999999999999999999999999987 7899999999752 112 23456678999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+..... ..+..+..+++.++++.+++.+..+++++.|||||||||+||+||+.+|++++|||||+|||+.++..+
T Consensus 106 L~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 106 IELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 98755321 233444556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
.+.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+++++..-+
T Consensus 183 lelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 183 LDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999865 588999999975 5788999999999999999999998876543
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=308.52 Aligned_cols=179 Identities=25% Similarity=0.328 Sum_probs=153.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~ 113 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ .+.+|+|.++|.++... . .+..++|++|++.+++.
T Consensus 12 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 4579999999999999999999999999999999999841 27889999999987531 1 24569999999988998
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|+++++ ++..+.||||||||++||++|+.+|++++|||||+|||+
T Consensus 92 ~~~~~~l----------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 92 VKNADFL----------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred ccHHHHH----------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 8888766 112358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh-cCCeEEEEcCCeEEEecChhHHHHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAGPTRLMLEYFR 254 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~-~~D~v~vL~~G~~v~~G~~~~~~~~f~ 254 (606)
.++..+.+.|+++++ .++|+|+++|++. .+.+ ++|++++|++|+++..|+.+ +.+.+.
T Consensus 138 ~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 138 DALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGDKE-LALEIE 196 (200)
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEccHH-HHhhhc
Confidence 999999999999875 4889999999864 5666 79999999999999999544 555443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=307.04 Aligned_cols=184 Identities=24% Similarity=0.378 Sum_probs=159.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSA 90 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccchHHhhhheEEeccCcccccCCcH
Confidence 4679999999999999999999999999999999999987 789999999987643 2345689999999889999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.|++.+...... . .++++.++++.+++.+..+++++.|||||||||+||++++.+|++++|||||+|||+.++
T Consensus 91 ~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 163 (198)
T TIGR01189 91 LENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163 (198)
T ss_pred HHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 999988654321 1 134578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
..+.+.|+++++ .|.|+|+++|++.+ -.+++++.
T Consensus 164 ~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 164 ALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 999999999875 48899999998742 23566654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=338.72 Aligned_cols=206 Identities=27% Similarity=0.428 Sum_probs=185.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~ 113 (606)
+..++|+||||++++||+++|+|.||||||||+|+|+|.++ +++|+|.++|++... +..+..|..|.|+..+.|+
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~-p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~ 97 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPN 97 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc-CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccCC
Confidence 34589999999999999999999999999999999999998 899999999998752 2345679999999999999
Q ss_pred CCHHHHHHHHHHccC-CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSI-GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 114 lTV~e~l~f~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
|||.||+.++-..+. ...+.++..+++++++|+.+++....++++++||+||||-|.||+||..+++|++|||||+.|+
T Consensus 98 LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt 177 (500)
T COG1129 98 LSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALT 177 (500)
T ss_pred ccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999999988765433 2336677788899999999999655899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
...+..+.+.++++.+ .|.++|.++|. .++++++|||+.||.||+.+..++.
T Consensus 178 ~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHr-l~Ei~~i~DritVlRDG~~v~~~~~ 229 (500)
T COG1129 178 VKETERLFDLIRRLKA-QGVAIIYISHR-LDEVFEIADRITVLRDGRVVGTRPT 229 (500)
T ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEcCc-HHHHHHhcCEEEEEeCCEEeeeccc
Confidence 9999999999999975 69999999985 6799999999999999999998883
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=319.85 Aligned_cols=195 Identities=25% Similarity=0.430 Sum_probs=161.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv 104 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ-PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSL 104 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHh-hhH
Confidence 469999999999999999999999999999999999987 789999999987642 234567999999988876 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+||+.++..........+......++++++.+ |+.+..+++++.|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 99998754311000000111112356788888 8888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
++..+.+.|+++++ ++|+|+++|++. ++. .||++++|++|++
T Consensus 185 ~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 185 SEQQVQQALYDWPE--RRTVLVIAHRLS-TVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHHcC--CCEEEEEECCHH-HHH-hCCEEEEecCCcC
Confidence 99999999999864 589999999864 554 5999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-38 Score=309.18 Aligned_cols=187 Identities=26% Similarity=0.412 Sum_probs=162.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.....++.++|++|++.+++.+||+|
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 3579999999999999999999999999999999999987 788999999987642225678999999988889999999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+..... ... .+++.++++.+|+.+..+++++.||||||||++||++|+.+|++++|||||+|||+.++.+
T Consensus 93 ~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~ 165 (207)
T PRK13539 93 NLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVAL 165 (207)
T ss_pred HHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 998765432 111 2357889999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+.+.|+++++ .|+|+|+++|++ +++.. |+++.+..
T Consensus 166 l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 166 FAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 9999999876 489999999986 35554 88877743
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=352.35 Aligned_cols=203 Identities=24% Similarity=0.393 Sum_probs=174.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCC---CCCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHR---TDLIPS 113 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~---~~~~~~ 113 (606)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|+ ..+++.
T Consensus 277 ~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 277 KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK-RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence 48999999999999999999999999999999999987 789999999988642 1245679999998 468899
Q ss_pred CCHHHHHHHHHHcc---CCC--C-CCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 114 LTVEQTLYYAAHLS---IGP--Q-VSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 114 lTV~e~l~f~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+||.|++.+....+ ... . ......+++++++++.+++. +..++++++|||||||||+||++|+.+|++|+|||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 99999998754211 000 0 12223345678999999997 78899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
||+|||+.++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..++.
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEecC
Confidence 9999999999999999999976 489999999975 578899999999999999988765
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=304.01 Aligned_cols=162 Identities=31% Similarity=0.521 Sum_probs=146.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----~~~~~~i~yv~q~~~~~~~ 113 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 3579999999999999999999999999999999999987 789999999988642 2356789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+|++|++.+. ||||||||++||+||+.+|++++|||||+|||+
T Consensus 91 ~t~~~~l~~~-------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 91 LTVLENIALG-------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred CCHHHheeec-------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 9999987542 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.++..+.+.|++++++.++|+|+++|++ +++.+.+|++++|++|+
T Consensus 134 ~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 134 ITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 9999999999999875578999999975 46778999999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=350.72 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=176.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+++.+|+|.++|+++.. ...++.++|++|+. .+++
T Consensus 273 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~ 352 (500)
T TIGR02633 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP 352 (500)
T ss_pred ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence 4699999999999999999999999999999999999873478999999988742 22466899999995 5899
Q ss_pred CCCHHHHHHHHHHccCC--CCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIG--PQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.+||+|++.+....... ........+++++++++.+++.+ ..+++++.|||||||||+||++|+.+|++|+|||||+
T Consensus 353 ~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 432 (500)
T TIGR02633 353 ILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 (500)
T ss_pred CCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 99999999875421110 01223334567889999999974 6899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChh
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~ 247 (606)
|||+.++..+.+.|++++++ |.|+|+++|++ +++.++||++++|++|+++..++.+
T Consensus 433 ~LD~~~~~~l~~~l~~l~~~-g~tviivsHd~-~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 433 GVDVGAKYEIYKLINQLAQE-GVAIIVVSSEL-AEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred CcCHhHHHHHHHHHHHHHhC-CCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999764 89999999975 5789999999999999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=324.51 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=170.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+|+|+|++|++||+++|+|||||||||||++|+|+.+ .+|+|.++|.++.. ..+|+.++|++|++.+++. ||
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv 93 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TF 93 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-hH
Confidence 469999999999999999999999999999999999986 57999999998743 3467789999999999985 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCC-----------CCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE-----------LTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----------LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.... ... .+++.++++.+||.+..++++.+ ||||||||++|||||+.+|+|++||
T Consensus 94 ~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD 163 (275)
T cd03289 94 RKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 163 (275)
T ss_pred HHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99996321 112 23567788899999888888877 9999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +.+. .||||++|++|++++.|+++++..
T Consensus 164 Epts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~-~~dri~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 164 EPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML-ECQRFLVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred CccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-hCCEEEEecCCeEeecCCHHHHhh
Confidence 9999999999999999999874 479999999986 4554 599999999999999999998865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=313.55 Aligned_cols=190 Identities=24% Similarity=0.366 Sum_probs=160.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv 94 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-LSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTI 94 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhHhCCHHHHhhhEEEECCCCcccc-chH
Confidence 469999999999999999999999999999999999987 789999999988642 235678999999998776 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.+... ... +++.+.++.+++.+.. ++.+..||||||||++||++|+.+|++++||
T Consensus 95 ~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 164 (221)
T cd03244 95 RSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD 164 (221)
T ss_pred HHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999864311 121 2345556666655433 5688999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
|||+|||+.++..+.+.|+++.+ +.|+|+++|++. ++. .||++++|++|++++.|+
T Consensus 165 EP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~-~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 165 EATASVDPETDALIQKTIREAFK--DCTVLTIAHRLD-TII-DSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HHh-hCCEEEEEECCeEEecCC
Confidence 99999999999999999999853 589999999864 454 599999999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=311.35 Aligned_cols=191 Identities=26% Similarity=0.388 Sum_probs=163.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC--CE--eCCc---c---cc-cCeEEEEcCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD--GT--PMSP---Q---LF-QTTCGYVNHRT 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~--G~--~~~~---~---~~-~~~i~yv~q~~ 108 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++ |. ++.. . .. ++.++|++|++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL-PDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 479999999999999999999999999999999999987 788999998 42 3321 1 12 35799999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+++.+||.|++.+..... ........+++.++++.+++.+ ..++++++||||||||++||+||+.+|++++||||
T Consensus 100 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 176 (224)
T TIGR02324 100 RVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEP 176 (224)
T ss_pred ccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999998865421 2333344567889999999986 45889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
|+|||+.++..+.+.|+++++ .|+|+|+++|+ .+.+.++||+++.+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~-~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 177 TASLDAANRQVVVELIAEAKA-RGAALIGIFHD-EEVRELVADRVMDVT 223 (224)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhcceeEecC
Confidence 999999999999999999975 48999999998 456778999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=361.71 Aligned_cols=198 Identities=25% Similarity=0.426 Sum_probs=169.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+|+|+|++|+|||.+||+|+||||||||+|+|+|++. |.+|+|++||.+++. ..+|+++|||+|++.+|.. |+
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI 563 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SI 563 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcC-cH
Confidence 369999999999999999999999999999999999998 789999999999754 4689999999999998876 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-----------CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-----------LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..+. +++.++++..| .+........+||||||||++|||||+++|+||+||
T Consensus 564 ~eNi~l~~p-----~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLD 634 (709)
T COG2274 564 RENIALGNP-----EATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLD 634 (709)
T ss_pred HHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 999988642 2232 22333333333 333333445689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
||||+||+.+...+.+.|+++. .|+|+|+++|.+ ...+.|||++||++|+++.+|+.+++++.
T Consensus 635 EaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl--~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 635 EATSALDPETEAIILQNLLQIL--QGRTVIIIAHRL--STIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccc--hHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 9999999999999999999985 479999999976 57899999999999999999999998863
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=349.63 Aligned_cols=206 Identities=20% Similarity=0.317 Sum_probs=177.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIPS 113 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~~ 113 (606)
.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|++ .+++.
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~-p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 344 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCC
Confidence 46999999999999999999999999999999999987 788999999988742 12456799999996 57899
Q ss_pred CCHHHHHHHHHHccCC---CCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 114 LTVEQTLYYAAHLSIG---PQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||.|++.+....... ......+.+++++++++.+++. +..+++++.|||||||||+||++|+.+|++++|||||+
T Consensus 345 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~ 424 (501)
T PRK10762 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTR 424 (501)
T ss_pred CcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 9999999875321100 0122333456788999999995 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||+.++..+.+.|++++++ |.|+|+++|++ +++.++||++++|++|+++..|+++++
T Consensus 425 ~LD~~~~~~l~~~l~~~~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 425 GVDVGAKKEIYQLINQFKAE-GLSIILVSSEM-PEVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCHhHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999764 89999999975 578999999999999999999987765
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=296.18 Aligned_cols=195 Identities=30% Similarity=0.456 Sum_probs=176.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
.+.+||+++|+.+++||..+|.||||||||||||+++.+.+ +++|++++.|++++. +.+|++|+|+.|.+.+|+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis-p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~- 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS-PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD- 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC-CCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-
Confidence 45689999999999999999999999999999999999987 899999999999864 5689999999999999997
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||++||.|..+++..+ ..+.+..++|+++++.+ ..++.+.+||||||||++|+|.|..-|+||+|||||++||+
T Consensus 92 tVeDNlifP~~~r~rr-----~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~ 166 (223)
T COG4619 92 TVEDNLIFPWQIRNRR-----PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166 (223)
T ss_pred chhhccccchHHhccC-----CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcCh
Confidence 9999999988765322 13456788999999976 57889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
.++..+-++|.++.++.+..++.++|++ ++..+.+||++-+..|+.
T Consensus 167 ~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 167 SNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 9999999999999878899999999986 467899999999999875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=288.90 Aligned_cols=206 Identities=28% Similarity=0.394 Sum_probs=182.1
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c-------ccccCeEEEEcCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P-------QLFQTTCGYVNHRT 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~-------~~~~~~i~yv~q~~ 108 (606)
+..++|-|++++.+.||-+.++||||||||||+|+|.-+.- +.+|+..+.|...+ . ..+|+.+|+|+|+-
T Consensus 13 g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~-p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy 91 (242)
T COG4161 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM-PRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQY 91 (242)
T ss_pred ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC-CCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhh
Confidence 34579999999999999999999999999999999986655 78899999876542 1 24788999999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.++|+|||.|||.-+.. + -.++++.+.+.++.++|+++.|.+.+|+.+-.|||||+|||+|||||+.+|++|++||||
T Consensus 92 ~lwphltv~enlieap~-k-v~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdept 169 (242)
T COG4161 92 NLWPHLTVQENLIEAPC-R-VLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169 (242)
T ss_pred ccCchhHHHHHHHhhhH-H-HhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcc
Confidence 99999999999977643 2 235778888889999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
++|||.-..++++++++++. .|.|-++++|. .+-+.+.+.||+.|++|++|+.|+.+.
T Consensus 170 aaldpeitaqvv~iikel~~-tgitqvivthe-v~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 170 AALDPEITAQIVSIIKELAE-TGITQVIVTHE-VEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred cccCHHHHHHHHHHHHHHHh-cCceEEEEEee-hhHHHhhhhheEeeecCeeEeecchhh
Confidence 99999999999999999986 68888887785 456788999999999999999998764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=303.93 Aligned_cols=167 Identities=30% Similarity=0.552 Sum_probs=147.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q--------- 80 (180)
T cd03214 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQ--------- 80 (180)
T ss_pred CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHH---------
Confidence 3579999999999999999999999999999999999987 789999999987742 123344666665
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+++.+|+.+..++.++.||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 81 ----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~ 132 (180)
T cd03214 81 ----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132 (180)
T ss_pred ----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 6777888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+..+.+.|++++++.+.|+|+++|++ +++.+++|++++|++|++++.|
T Consensus 133 ~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 133 QIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 99999999999765478999999976 4678999999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=348.41 Aligned_cols=198 Identities=22% Similarity=0.315 Sum_probs=171.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCC--C-C
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDL--I-P 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~--~-~ 112 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++.. ...++.++|++|++.. + +
T Consensus 15 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~-p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 15 DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP-LLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 3469999999999999999999999999999999999987 789999999876532 2234569999998642 1 1
Q ss_pred -----CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 113 -----SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 113 -----~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+||.|++.+. .+.+++++++++.+|+.+..++++++|||||||||+||+||+.+|++++||||
T Consensus 94 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (490)
T PRK10938 94 GEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEP 162 (490)
T ss_pred chhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 47888876431 12345688999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+.+.|+++++ .|.|+|+++|++ +.+.++||++++|++|+++..|++++..
T Consensus 163 t~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 163 FDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999976 488999999975 5788999999999999999999987753
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=305.83 Aligned_cols=182 Identities=28% Similarity=0.412 Sum_probs=158.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|.++.. ..+++.++|++|+..+++.+||
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 91 (200)
T PRK13540 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN-PEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTL 91 (200)
T ss_pred CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCH
Confidence 3579999999999999999999999999999999999987 789999999987642 2356789999999989899999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+|++.+..... . ...++.++++.+++.+..+++++.||||||||++||++++.+|++++|||||+|||+.++
T Consensus 92 ~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~ 163 (200)
T PRK13540 92 RENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSL 163 (200)
T ss_pred HHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 99998865311 1 124678899999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
..+.+.|+++++ .+.|+|+++|++ +..+.+|..
T Consensus 164 ~~l~~~l~~~~~-~~~tiii~sh~~--~~~~~~d~~ 196 (200)
T PRK13540 164 LTIITKIQEHRA-KGGAVLLTSHQD--LPLNKADYE 196 (200)
T ss_pred HHHHHHHHHHHH-cCCEEEEEeCCc--hhccccchh
Confidence 999999999865 488999999985 345667654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=348.61 Aligned_cols=206 Identities=21% Similarity=0.328 Sum_probs=176.8
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIPS 113 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~~ 113 (606)
.+++|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++ .+++.
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 345 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR-RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV 345 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc-CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence 58999999999999999999999999999999999987 788999999987642 12356799999986 48999
Q ss_pred CCHHHHHHHHHHccC-CCC--CCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 114 LTVEQTLYYAAHLSI-GPQ--VSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||.|++.+...... ... ......+++++++++.+++. +..++++..|||||||||+||++|+.+|++|+|||||+
T Consensus 346 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~ 425 (501)
T PRK11288 346 HSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTR 425 (501)
T ss_pred CCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCC
Confidence 999999987542110 001 12223345688999999994 67899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|||+.++.++.+.|+++++ .|.|||+++|+. +++.++||++++|++|++++.|+++++
T Consensus 426 ~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 426 GIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999976 488999999975 578999999999999999999987754
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=317.99 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=164.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+|+||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv 111 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD-IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSI 111 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC-CCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHH
Confidence 469999999999999999999999999999999999987 789999999998743 235678999999998887 499
Q ss_pred HHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+..... ...... ...+.+.++.+ +++...++.++.||||||||++||+||+.+|++++|||||+
T Consensus 112 ~~nl~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 185 (257)
T cd03288 112 RFNLDPECK------CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATA 185 (257)
T ss_pred HHhcCcCCC------CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998853210 111111 11233444444 56666667788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|+++. .+.|+|+++|++. .+.. |||+++|++|+++..|+++++.+
T Consensus 186 gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~-~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 186 SIDMATENILQKVVMTAF--ADRTVVTIAHRVS-TILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred CCCHHHHHHHHHHHHHhc--CCCEEEEEecChH-HHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999874 3789999999875 4554 99999999999999999887654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=360.35 Aligned_cols=195 Identities=23% Similarity=0.370 Sum_probs=168.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ |.+|+|.+||+++.. ..+|+.++||+|++.+|+. |
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-T 542 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET-PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-S 542 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcc-c
Confidence 3579999999999999999999999999999999999998 789999999999853 4578999999999999976 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++.. .+. +++.++++..++.+.. |+. ...||||||||++|||||+++|++++|
T Consensus 543 I~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiL 612 (686)
T TIGR03797 543 IFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLF 612 (686)
T ss_pred HHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 222 3466677777665433 232 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|+++ ++|+|+++|++ +..+.+|+|++|++|+++..|+.+++++
T Consensus 613 DEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 613 DEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred eCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999875 47999999986 4567799999999999999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=300.69 Aligned_cols=161 Identities=29% Similarity=0.505 Sum_probs=145.5
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCC---CCCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRT---DLIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~---~~~~~l 114 (606)
+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. ...++.++|++|++ .+++.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-PASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence 8999999999999999999999999999999999987 789999999988753 12467899999984 578899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|++||+.+... |||||||||+||+||+.+|++++|||||+|||+.
T Consensus 94 t~~e~l~~~~~-----------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 94 SVAENIALSSL-----------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred cHHHHHHHHhh-----------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 99999876421 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
++..+.+.|+++++ .++|+|+++|++ +++.++||++++|++|++
T Consensus 139 ~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 139 AKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence 99999999999975 488999999975 578899999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=346.63 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=173.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCC---CCCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRT---DLIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~---~~~~~l 114 (606)
+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++ .+++.+
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~ 356 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP-ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA 356 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC-CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence 6999999999999999999999999999999999987 7889999999887431 1346799999984 488899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.|++.................+++++++++.+++. +..++++++|||||||||+||++|+.+|++|||||||+|||+
T Consensus 357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 9999986432110010111222345688999999997 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++..+.+.|+++++ .|.|+|+++|++ +++.++||++++|++|+++..|.++++
T Consensus 437 ~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 437 SARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred hHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999986 489999999975 578999999999999999998876543
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=344.89 Aligned_cols=202 Identities=26% Similarity=0.472 Sum_probs=171.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~ 113 (606)
.++.+||||+||+|+|||.+||+||||+||||+.++|-.++. |.+|+|++||+|+.+ ..+|++||+|.|+|.+|..
T Consensus 478 Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~-PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~ 556 (716)
T KOG0058|consen 478 RPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD-PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSG 556 (716)
T ss_pred CCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecc
Confidence 445679999999999999999999999999999999999988 899999999999864 4578999999999999986
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHcCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
||+|||.++.. +.+.++....+ .+.+. ++.+-.|+.+ ..||||||||++|||||++||+||||
T Consensus 557 -sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 557 -SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred -cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 99999999864 33443332222 22222 4444455555 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.||+||+.+...+.+.|.+..+ ++|||++.|.. ...+.+|+|+|+++|++++.|.-+|+++
T Consensus 629 DEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 629 DEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred echhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEEcCCeEEecccHHHHhh
Confidence 999999999999999999998864 58999988864 5788999999999999999999888865
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=298.63 Aligned_cols=162 Identities=30% Similarity=0.561 Sum_probs=145.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|++
T Consensus 15 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 92 (178)
T cd03247 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFD-TTLR 92 (178)
T ss_pred ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeec-ccHH
Confidence 369999999999999999999999999999999999987 789999999987642 235678999999988776 6998
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+ +..||||||||++||+||+.+|++++|||||+|||+.++.
T Consensus 93 ~~i-------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~ 135 (178)
T cd03247 93 NNL-------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135 (178)
T ss_pred Hhh-------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 886 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+++.|++++ + ++|+|+++|++. ++ +.+|++++|++|++++.|
T Consensus 136 ~l~~~l~~~~-~-~~tii~~sh~~~-~~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 136 QLLSLIFEVL-K-DKTLIWITHHLT-GI-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHc-C-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEecC
Confidence 9999999984 3 789999999864 45 579999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=361.19 Aligned_cols=196 Identities=23% Similarity=0.399 Sum_probs=166.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ |.+|+|.+||.++.. ..+|+.++||+|++.+|+. |
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-T 568 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-T 568 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhc-c
Confidence 3579999999999999999999999999999999999998 789999999998753 4578999999999999975 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++. + ..+. +++.++++..++.+. ..+....||||||||++|||||+++|++++|
T Consensus 569 i~eNi~l~~----~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliL 639 (710)
T TIGR03796 569 VRDNLTLWD----P-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILIL 639 (710)
T ss_pred HHHHhhCCC----C-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 999997642 1 2232 345555665555432 2233457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|++ .++|+|+++|++ +..+.||||++|++|+++..|+.+++++
T Consensus 640 DEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 640 DEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred ECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999975 378999999986 4567799999999999999999998865
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=296.39 Aligned_cols=156 Identities=25% Similarity=0.473 Sum_probs=141.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+++|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++. ||
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv 92 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG-SI 92 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccC-cH
Confidence 469999999999999999999999999999999999987 789999999988743 2356789999999988874 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+ ||||||||++||++|+.+|++++|||||+|||+.++
T Consensus 93 ~~~l----------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~ 132 (173)
T cd03246 93 AENI----------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132 (173)
T ss_pred HHHC----------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHH
Confidence 9886 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
..+.+.|+++++ .|+|+|+++|++. .+ +.||++++|++|++
T Consensus 133 ~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 133 RALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999975 4899999999864 45 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=352.22 Aligned_cols=196 Identities=23% Similarity=0.380 Sum_probs=170.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ |.+|+|.+||.++++ +.+|+.++|++|++.+|+. |+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti 431 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TF 431 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccc-hH
Confidence 469999999999999999999999999999999999998 789999999998753 4578999999999999987 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.++. ..+ ++++.++++.+|+.+.. |+. ...||||||||++|||||+++|++++||
T Consensus 432 ~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlD 501 (592)
T PRK10790 432 LANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501 (592)
T ss_pred HHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99998853 122 23466777777765433 232 3569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++.+ ++|+|+++|++ +..+.||+|++|++|+++..|+.+++.+
T Consensus 502 Epts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 502 EATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred CCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999998853 68999999987 4577899999999999999999998864
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=330.18 Aligned_cols=197 Identities=26% Similarity=0.402 Sum_probs=171.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++||+++||+|++||-+||+|+|||||||+||+|.+... .+|+|++||+++++ +.+|+.|||||||..+|.+ |
T Consensus 364 k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-T 440 (591)
T KOG0057|consen 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-T 440 (591)
T ss_pred CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEECCeeHhhhChHHhhhheeEeCCcccccch-h
Confidence 4459999999999999999999999999999999999875 68999999999854 4589999999999999876 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-----------cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-----------NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|.+|+.++.. ..+. +++.++.++.|+.+.-.+ +...|||||||||+||||++++|+|+++
T Consensus 441 Il~NI~YGn~-----sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~ 511 (591)
T KOG0057|consen 441 ILYNIKYGNP-----SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLL 511 (591)
T ss_pred HHHHhhcCCC-----CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEe
Confidence 9999998752 2333 456667777777654333 3356999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||.||..+..++++.+++. ..++|+|++.|.. +..+.||+|++|++|++...|+.++++.
T Consensus 512 DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 512 DEATSALDSETEREILDMIMDV--MSGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred cCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999984 3689999999964 6889999999999999999999999986
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=349.87 Aligned_cols=198 Identities=24% Similarity=0.389 Sum_probs=168.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ |.+|+|.+||.+++. ..+++.++|++|++.+|+. |+
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti 433 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD-IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFND-TI 433 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC-CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecc-hH
Confidence 579999999999999999999999999999999999998 789999999998753 3578899999999999975 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++. +...+. ++++++++..++.+. .|+.+ ..||||||||++|||||+++|++++||
T Consensus 434 ~~Ni~~~~----~~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD 505 (582)
T PRK11176 434 ANNIAYAR----TEQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_pred HHHHhcCC----CCCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99998752 111232 345566666655432 23333 569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +..+.||+|++|++|+++..|+.+++.+
T Consensus 506 EptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 506 EATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999875 368999999986 4678899999999999999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=336.42 Aligned_cols=198 Identities=25% Similarity=0.412 Sum_probs=172.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++++|+|+++++|+.++|+|+||||||||+++|+|+.+ +++|+|.+||.+..+ ..+|++++||+|++.+++. |
T Consensus 333 g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~-~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-T 410 (559)
T COG4988 333 GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA-PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-T 410 (559)
T ss_pred CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCccccccCHHHHHhHeeeeCCCCccccc-c
Confidence 3489999999999999999999999999999999999998 789999999988653 5689999999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR----------NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
++||+.++.. ..+ ++.+.++++..|+.+..+. .-++|||||+|||++||||+++++++++|
T Consensus 411 ireNi~l~~~-----~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD 481 (559)
T COG4988 411 IRENILLARP-----DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD 481 (559)
T ss_pred HHHHhhccCC-----cCC----HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 9999988642 223 3456677777766554332 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||.++...+.+.|.++++ ++|+++++|++ ....-+|+|++|++|+++..|..+++.+
T Consensus 482 EpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 482 EPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred CCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCceeccCCHHHHhh
Confidence 99999999999999999999986 48999999975 4677899999999999999999998854
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=326.11 Aligned_cols=204 Identities=27% Similarity=0.424 Sum_probs=185.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
...+++|||++|++||++||+|.||||||||+|+|.|.++ |++|+|.++|+++.- +..+..||+|.|+..++|++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~l 94 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL 94 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc-CCcceEEECCEEeccCCHHHHHHcCCcEEeecccccccc
Confidence 4689999999999999999999999999999999999998 899999999998743 23677899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.||+..+..-...........+++++++.+++||.-..|+++.+||-||||||.|-++|..+|++|||||||+-|-|.
T Consensus 95 TV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~ 174 (501)
T COG3845 95 TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174 (501)
T ss_pred chhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 99999999875332334566778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
.+.++++.|+++++ .|+|||+++|. ..|+.++|||+.||..|+++..-+
T Consensus 175 E~~~lf~~l~~l~~-~G~tIi~ITHK-L~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 175 EADELFEILRRLAA-EGKTIIFITHK-LKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEecc-HHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999986 59999999996 579999999999999999886655
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=302.84 Aligned_cols=184 Identities=21% Similarity=0.340 Sum_probs=155.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++ .||
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv 98 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE-AEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTI 98 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccC-ccH
Confidence 469999999999999999999999999999999999987 789999999998642 235678999999998887 499
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+.. .... +.+.+.++ .++.++.|||||||||+|||+|+.+|+++++||||+|||+.++
T Consensus 99 ~~~l~~~~------~~~~----~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 99 RSNLDPFD------EYSD----EEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred HHHhcccC------CCCH----HHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 99996521 1121 22334443 3678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
..+.+.|+++. .++|+|+++|++. .+.. +|++++|++|+++..|++
T Consensus 162 ~~l~~~l~~~~--~~~tiii~th~~~-~~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 162 ALIQKTIREEF--TNSTILTIAHRLR-TIID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHhc--CCCEEEEEeCCHH-HHhh-CCEEEEEECCEEEecCCC
Confidence 99999999984 3789999999864 4544 999999999999988763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=347.02 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=170.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.. ..+|+.++|++|++.+++. |+
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti 408 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP-PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-TV 408 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEehhhCCHHHHhhheEEecCCcccccc-cH
Confidence 579999999999999999999999999999999999987 789999999998753 3467899999999999986 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+.+... ..+.++.. ...++.++.+ |++...++....||||||||++||||++++|++++|||||+
T Consensus 409 ~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts 483 (544)
T TIGR01842 409 AENIARFGE-----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNS 483 (544)
T ss_pred HHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999975321 12332211 1234455555 55655666778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++.++.+.|+++.+ .++|+|+++|++. ..+.||+|++|++|++++.|+.+++.+
T Consensus 484 ~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 484 NLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred ccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999998853 4789999999874 567899999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=348.62 Aligned_cols=197 Identities=31% Similarity=0.513 Sum_probs=171.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.+ ..+|+.++|++|++.+|+. |+
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti 430 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TL 430 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcc-cH
Confidence 469999999999999999999999999999999999988 789999999998753 4578899999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR----------NISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~----------~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+||+.++.. ..+ ++++.++++..++.+..++ ....||||||||++|||||+++|++++|||
T Consensus 431 ~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE 501 (574)
T PRK11160 431 RDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501 (574)
T ss_pred HHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999987531 122 3457788888888765443 345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||++||+.+...+.+.|+++. .++|+|+++|+++ ..+.+|++++|++|+++..|+.+++++
T Consensus 502 ~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 502 PTEGLDAETERQILELLAEHA--QNKTVLMITHRLT--GLEQFDRICVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred CcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChh--HHHhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999885 3789999999874 346699999999999999999988764
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=302.78 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=163.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-ECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-LDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|||+++++||+++|+||||||||||+|+|+|..+ +.+|+|. ++|.... +.+++.++|.+|+.||+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~-~~sG~i~~~~~~~~~----------~~~~~~l~~~ltv~enl 70 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA-PDEGDFIGLRGDALP----------LGANSFILPGLTGEENA 70 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCCCEEEecCceec----------cccccccCCcCcHHHHH
Confidence 7999999999999999999999999999999999987 7899997 7765321 23456788999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... .....+. .+.+.+.+++++..++++++||||||||++||+||+.+|+++++||||++||+.++..+.
T Consensus 71 ~~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~ 144 (213)
T PRK15177 71 RMMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQ 144 (213)
T ss_pred HHHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHH
Confidence 9876532 1222221 223445678888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHc
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~ 256 (606)
+.|.+..+ ++++|+++|++ .++.++||++++|++|++++.|+.+++..+++..
T Consensus 145 ~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 145 AALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred HHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 98866543 35788888876 4688899999999999999999999998877543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=350.43 Aligned_cols=202 Identities=26% Similarity=0.429 Sum_probs=168.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|++++|||.+||+||||||||||+|.|.++.+ +.+|+|.+||++++. ..+|+.+++|+|++.+|. -|
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~T 418 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GT 418 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCEehhhcCHHHHHHhccEEcccceeec-cc
Confidence 5789999999999999999999999999999999999998 789999999998864 457899999999999998 69
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++.. ..++++..+.+ .+.++.+ |++.........||||||||++||||++++|++++|||||
T Consensus 419 I~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaT 493 (567)
T COG1132 419 IRENIALGRP-----DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT 493 (567)
T ss_pred HHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 9999998753 23443332222 2333333 3333333344579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+||+.+...+.+.++++. .++|+++++|+++ .+. .+|+|+||++|++++.|+.+++.+
T Consensus 494 SalD~~tE~~I~~~l~~l~--~~rT~iiIaHRls-ti~-~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 494 SALDTETEALIQDALKKLL--KGRTTLIIAHRLS-TIK-NADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred cccCHHhHHHHHHHHHHHh--cCCEEEEEeccHh-HHH-hCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999876 3578888889873 444 499999999999999999999876
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=292.84 Aligned_cols=218 Identities=24% Similarity=0.321 Sum_probs=188.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
+.||++||++|++||+.+||||||||||||.++|+|.-.- .++|+|.++|+++.. ++.|..+..-+|.|.=+|..
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 5899999999999999999999999999999999998531 567999999999853 34567788889999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
|+.+.|..+.+.+....-...+..+++++.++.+++.+ .+++.+. ++|||||||..|+.+++.+|++.+||||-||||
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 99999998887543221113456778999999999987 7788874 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC--CeEEEEcCCeEEEecChhHHHHHHHHcCCCCC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL--DRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCP 261 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~--D~v~vL~~G~~v~~G~~~~~~~~f~~~G~~~~ 261 (606)
..+-..+.+.++++.++ +.+++++||.. .+.++. |+|.+|.+|||+..|.+ ++.+..+.-||.|-
T Consensus 177 Idalk~V~~~i~~lr~~-~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~~-el~~~le~~gy~~~ 243 (251)
T COG0396 177 IDALKIVAEGINALREE-GRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGDP-ELAEELEEKGYDWL 243 (251)
T ss_pred HHHHHHHHHHHHHHhcC-CCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence 99999999999999764 77777777763 678877 99999999999999999 88888888898763
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=307.63 Aligned_cols=190 Identities=22% Similarity=0.298 Sum_probs=159.9
Q ss_pred eEEeeEEEEe-----CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 42 ILKDISLEVR-----PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 42 iL~~vs~~v~-----~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.++|++++++ +||+++|+||||||||||||+|+|..+ +.+|+|.++|. .++|++|+....+.+||
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p~~G~i~~~g~---------~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK-PDEGDIEIELD---------TVSYKPQYIKADYEGTV 78 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCCeEEECCc---------eEEEecccccCCCCCCH
Confidence 5666666665 799999999999999999999999987 78899999874 58999999887788999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
.|++.+..... . . .....+++++.+++.+..+++++.|||||||||+||++|+.+|++++|||||++||+.++
T Consensus 79 ~e~l~~~~~~~---~-~---~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~ 151 (246)
T cd03237 79 RDLLSSITKDF---Y-T---HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQR 151 (246)
T ss_pred HHHHHHHhhhc---c-c---cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 99997654311 0 1 123467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE--EecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI--YAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v--~~G~~~~~ 249 (606)
..+.+.|++++++.++|+|+++|+. +.+..+||++++|+++..+ ..+++.++
T Consensus 152 ~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 152 LMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999876689999999975 5788899999999765433 34444443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=355.63 Aligned_cols=199 Identities=26% Similarity=0.434 Sum_probs=169.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.+++. ..+|+.++||+|++.+|+. |
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-T 554 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-T 554 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhh-h
Confidence 3579999999999999999999999999999999999998 789999999998753 4578999999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++.. ..+. +++.++++..++.+. ..+....||||||||++|||||+++|++++|
T Consensus 555 I~eNi~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliL 625 (694)
T TIGR03375 555 LRDNIALGAP-----YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLL 625 (694)
T ss_pred HHHHHhCCCC-----CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 2233 345555555555432 2233457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
||||++||+.+..++.+.|+++. .++|+|+++|++ +..+.||+|++|++|++++.|+.+++++.
T Consensus 626 DE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl--~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 626 DEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRT--SLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCH--HHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999885 378999999987 35688999999999999999999988653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=306.28 Aligned_cols=210 Identities=24% Similarity=0.375 Sum_probs=188.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEc-CCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVN-HRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~-q~~~~~~~lT 115 (606)
...+++|+||+|++||+++++|+|||||||+||+|+|.+. |.+|.|.++|...-. +.+-+++++|+ |...+.-.+.
T Consensus 36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~-p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc-cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 4568999999999999999999999999999999999998 889999999987532 23445677764 5566777777
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
+.|++......+ .++.++.+++.+.+.+.++|+...+.++|.||-|||.|+.||.+|+++|+||+|||||=|||...
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a 191 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA 191 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH
Confidence 888887765543 57788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
+..+.+.|++..++.+.||+.|+|. .+++.++||||++|+.|+++|+|+.+++.+-|
T Consensus 192 q~~ir~Flke~n~~~~aTVllTTH~-~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f 248 (325)
T COG4586 192 QANIREFLKEYNEERQATVLLTTHI-FDDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248 (325)
T ss_pred HHHHHHHHHHHHHhhCceEEEEecc-hhhHHHhhhheEEeeCCcEeecccHHHHHHHh
Confidence 9999999999999999999999985 57899999999999999999999999998766
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=356.21 Aligned_cols=196 Identities=25% Similarity=0.437 Sum_probs=164.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|++++|||.++|+||||||||||+|+|+|..+ +.+|+|.+||+++++ ..+|++++||+|++.+|+. |
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-T 570 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-S 570 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHhhceEEecCcccccc-C
Confidence 3579999999999999999999999999999999999998 789999999999753 4578899999999999875 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cc----cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RR----NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++|||.++.. ..++ +++.++++..++.+.. |+ ....||||||||++||||++++|+|++|
T Consensus 571 IreNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILIL 641 (711)
T TIGR00958 571 VRENIAYGLT-----DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641 (711)
T ss_pred HHHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987532 2222 3455666666654322 33 3357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+.+ .. ...++|+|+++|++ +..+.+|+|++|++|++++.|+.+++++
T Consensus 642 DEpTSaLD~~te~~i~~-~~---~~~~~TvIiItHrl--~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 642 DEATSALDAECEQLLQE-SR---SRASRTVLLIAHRL--STVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EccccccCHHHHHHHHH-hh---ccCCCeEEEEeccH--HHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 99999999999998888 22 23578999999986 3567899999999999999999998865
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=331.79 Aligned_cols=198 Identities=28% Similarity=0.461 Sum_probs=172.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
..++|+|+|+++++||.+||+|+||||||||+++|+|..+ +.+|+|.+||.++.. +..++.++.++|...+|.. |
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~-~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-T 427 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD-PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSG-T 427 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC-CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHH-H
Confidence 3469999999999999999999999999999999999988 789999999988743 3477889999999998876 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+++||.++.. +.+. +.+.++++++||++... ..-+.||||||||++|||+|++|.++++|
T Consensus 428 lr~NL~lA~~-----~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lL 498 (573)
T COG4987 428 LRDNLRLANP-----DASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498 (573)
T ss_pred HHHHHhhcCC-----CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEe
Confidence 9999988753 2333 45667778887766433 33468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||.|||+.|..++++.|.+.++ |+|+|+++|+.. -.+.||||++|++|++++.|...++.+
T Consensus 499 DEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 499 DEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred cCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999998764 899999999865 367899999999999999999998865
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=310.96 Aligned_cols=209 Identities=25% Similarity=0.378 Sum_probs=190.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCC--C
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTD--L 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~--~ 110 (606)
...+++++|+++++||-++|+|.||||||||-.+|.++.+ .+|+|.++|++++. ..+|+++-.|+||+. +
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~--s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSL 376 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP--SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSL 376 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC--cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCC
Confidence 3579999999999999999999999999999999999986 34999999999863 136788999999974 8
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
.|.+||.|-+.-++....+ ..++.+..+++.++|+.+||+. ..++++++.|||||||++||||++.+|++++||||||
T Consensus 377 sPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTS 455 (534)
T COG4172 377 SPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTS 455 (534)
T ss_pred CcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCch
Confidence 9999999999998887543 5788899999999999999975 7899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.||-+-+.+++++|+++.++.|.+-++++|+ ..-+-.+||+|+||++|++|+.|+++++.+
T Consensus 456 ALD~SVQaQvv~LLr~LQ~k~~LsYLFISHD-L~VvrAl~~~viVm~~GkiVE~G~~~~if~ 516 (534)
T COG4172 456 ALDRSVQAQVLDLLRDLQQKHGLSYLFISHD-LAVVRALCHRVIVMRDGKIVEQGPTEAVFA 516 (534)
T ss_pred HhhHHHHHHHHHHHHHHHHHhCCeEEEEecc-HHHHHHhhceEEEEeCCEEeeeCCHHHHhc
Confidence 9999999999999999999999999999886 457889999999999999999999998753
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=346.54 Aligned_cols=197 Identities=22% Similarity=0.390 Sum_probs=166.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++++|||.++|+|+||||||||+|+|+|+.+ |.+|+|.+||.+++. ..+|+.++|++|++.+|+. |+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti 425 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SI 425 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccc-cH
Confidence 569999999999999999999999999999999999998 789999999998754 4578899999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----------VARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++. + ..++ +++.++++..++.+ ........||||||||++|||||+++|++++||
T Consensus 426 ~~Ni~~~~----~-~~~d----~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD 496 (588)
T PRK13657 426 EDNIRVGR----P-DATD----EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD 496 (588)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99998752 1 2232 23444455544432 222334569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +..+.+|||++|++|+++..|+.++..+
T Consensus 497 Epts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 497 EATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred CCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999874 378999999987 4578899999999999999999887753
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=355.64 Aligned_cols=198 Identities=23% Similarity=0.372 Sum_probs=167.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||.++|+||||||||||+|+|+|+.+ |.+|+|.+||.++++ ..+|+.++||+|++.+|+. |
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-T 563 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-S 563 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhH-H
Confidence 4579999999999999999999999999999999999998 789999999998743 4578899999999999976 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----------VARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++.. ...+. +++.++++..++.+ ........||||||||++||||++++|++++|
T Consensus 564 I~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliL 635 (708)
T TIGR01193 564 ILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLIL 635 (708)
T ss_pred HHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 9999988632 12232 33455555555433 22233457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+.+.|+++ .++|+|+++|++ +..+.+|+|++|++|+++..|+.+++++
T Consensus 636 DE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 636 DESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred eCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874 368999999987 4568899999999999999999988764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=299.61 Aligned_cols=185 Identities=19% Similarity=0.313 Sum_probs=152.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~~~ 112 (606)
+++++|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.++
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~- 91 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL- 91 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC-CCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-
Confidence 569999999999999999999999999999999999987 789999999987632 12356799999999877
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
..|++||+.+... ... ++.+++++.+++.+. .++++..|||||||||+||++|+.+|++
T Consensus 92 ~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 92 NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 5799999977431 111 123344555555432 3567899999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 182 LLLDEPTVNLDPLSTYLIVS--MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~--~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
++|||||+|||+.++..+++ +++.+. +.|.|+|+++|++. .+ ..+|++++|++|+
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~ 218 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS 218 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence 99999999999999999998 666654 45899999999874 45 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=354.26 Aligned_cols=199 Identities=25% Similarity=0.445 Sum_probs=165.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
++..||+|+|+.|++||.++|+|||||||||++++|.+.+. |.+|+|.+||.++.. +.+|.+||.|.|+|.+|. .
T Consensus 364 pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd-P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~-~ 441 (1228)
T KOG0055|consen 364 PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD-PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFA-T 441 (1228)
T ss_pred CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCceEEEcCccchhcchHHHHhhcCeeeechhhhc-c
Confidence 34579999999999999999999999999999999999998 889999999998754 457899999999998885 5
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-------CCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-------ALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
|++||+.|+.. +.++++ +.++.+.. .|.+-.++.+ -+||||||||++|||||+.+|+||+
T Consensus 442 tI~eNI~~G~~-----dat~~~----i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILL 512 (1228)
T KOG0055|consen 442 TIRENIRYGKP-----DATREE----IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILL 512 (1228)
T ss_pred cHHHHHhcCCC-----cccHHH----HHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEE
Confidence 99999998642 233333 23333222 2233334443 3599999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||++||+.+...+.+.|++.. .|+|.|++.|+.+ .+.+ +|++++|++|++++.|+.+|+++
T Consensus 513 LDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 513 LDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred ecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999875 3778888888754 4554 99999999999999999999976
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=298.63 Aligned_cols=179 Identities=21% Similarity=0.293 Sum_probs=145.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++++||+++|+|||||||||||++|+|+.+ +.+|+|.++| .++|++|++.+++ .|++||
T Consensus 18 ~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~-~~~G~i~~~g----------~i~~~~q~~~l~~-~t~~en 85 (204)
T cd03250 18 SFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPG----------SIAYVSQEPWIQN-GTIREN 85 (204)
T ss_pred cceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCCeEEEcC----------EEEEEecCchhcc-CcHHHH
Confidence 369999999999999999999999999999999999987 7899999998 5999999998874 699999
Q ss_pred HHHHHHccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNAR-----IRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.+... .......+. +.+.+..+ ++....++.+++||+|||||++||++|+.+|+++++||||+|||
T Consensus 86 l~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 86 ILFGKP------FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred hccCCC------cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 987432 111111111 11222222 33444566789999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 193 PLSTYLIVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 193 ~~~~~~i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+.++..+.+ +++++.+ .++|+|+++|++. .+.. +|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLL-NNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhcc-CCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 999999998 4666655 4899999999864 5555 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=342.53 Aligned_cols=201 Identities=19% Similarity=0.338 Sum_probs=166.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+++|+|..+ +.+|+|.+||.++.. ..+++.++|++|++.+++ .|+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti 425 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RSI 425 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC-CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-ccH
Confidence 468999999999999999999999999999999999987 789999999998753 347789999999998886 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+||+.++.. ..+.++..+.. .+.+..+ |++...++....||||||||++|||||+++|++++|||||+
T Consensus 426 ~~Ni~~~~~-----~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts 500 (585)
T TIGR01192 426 RENIRLGRE-----GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATS 500 (585)
T ss_pred HHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 999987531 22332222211 2223322 44545556677899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+.++..+.+.|+++. .++|+|+++|++. ..+.||+|++|++|+++..|+.++..+
T Consensus 501 ~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 501 ALDVETEARVKNAIDALR--KNRTTFIIAHRLS--TVRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred CCCHHHHHHHHHHHHHHh--CCCEEEEEEcChH--HHHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999874 4789999999873 346799999999999999999887754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=350.38 Aligned_cols=198 Identities=21% Similarity=0.387 Sum_probs=167.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.+++. ..+|+.++||+|++.+|+. |
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~-p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-t 546 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT-PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-S 546 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhh-h
Confidence 3569999999999999999999999999999999999988 789999999998753 4578899999999998875 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-----------CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-----------LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-----------L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++||+.++. + ..+. +++.++++..+ ++...++....||||||||++|||||+++|++++|
T Consensus 547 i~eNi~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ilil 617 (694)
T TIGR01846 547 IRDNIALCN----P-GAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617 (694)
T ss_pred HHHHHhcCC----C-CCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999997642 1 2232 23344444444 33333444578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|+++. .++|+|+++|++. ..+.||+|++|++|++++.|+.+++.+
T Consensus 618 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 618 DEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLS--TVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChH--HHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999984 4789999999873 456799999999999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=288.56 Aligned_cols=153 Identities=33% Similarity=0.573 Sum_probs=138.1
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|+.
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 69999999999999999999999999999999999987 788999999988642 235678999999987776 5888
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||+ |||||||||+||++|+.+|++++|||||+|||+.++.
T Consensus 94 e~l----------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~ 133 (171)
T cd03228 94 ENI----------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEA 133 (171)
T ss_pred HHh----------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHH
Confidence 886 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
++.+.|+++. + ++|+|+++|++. ++.. ||++++|++|+
T Consensus 134 ~l~~~l~~~~-~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 134 LILEALRALA-K-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHhc-C-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 9999999985 3 689999999864 5665 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=299.21 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=177.6
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCC--CC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHR--TD 109 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~--~~ 109 (606)
.+++|+||+|+|++|++||..+|+|||||||||||++++|..+ +.+|.+.+.|+.... .++|++||+|... ..
T Consensus 40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~-pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~ 118 (257)
T COG1119 40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHER 118 (257)
T ss_pred EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC-CCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhh
Confidence 4567899999999999999999999999999999999999987 679999999988743 3578999999754 34
Q ss_pred CCCCCCHHHHHHHHHHcc--CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 110 LIPSLTVEQTLYYAAHLS--IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.+..+|+|-+.-+.... .......++..+++..+++.+|+++.+|++.+.||-||||||-|||||+++|.+||||||
T Consensus 119 ~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP 198 (257)
T COG1119 119 FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEP 198 (257)
T ss_pred cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCc
Confidence 566788888776443321 111122345667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh-CCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKR-KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~-~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
++|||...+..+.+.|.+++.. .+.++|+++||+ +|+...++++++|++|++++.|.
T Consensus 199 ~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 199 AQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred cccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999753 367888889986 68999999999999999999874
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=339.38 Aligned_cols=204 Identities=25% Similarity=0.412 Sum_probs=181.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc----ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL----FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~----~~~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. +. .++.++|++|+..+++
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~ 99 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK-PTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLS 99 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCC
Confidence 579999999999999999999999999999999999987 789999999998753 11 2568999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+|+.||+.+..... .....+.++++.++++.+|+.+..|+.++.||||||||++|||+|+.+|+++++||||+|||
T Consensus 100 ~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD 176 (648)
T PRK10535 100 HLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176 (648)
T ss_pred CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence 999999998865421 23344556778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++..+.+.|+++++ .|+|+|+++|++. ..+.|||+++|++|++++.|++++..
T Consensus 177 ~~s~~~l~~ll~~l~~-~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 177 SHSGEEVMAILHQLRD-RGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999875 5899999999864 44679999999999999999998775
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=342.62 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=169.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.+++. ..+++.++|++|++.+|+. |+
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti 422 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE-PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND-TI 422 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccc-cH
Confidence 579999999999999999999999999999999999998 788999999998753 4578899999999998876 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.++. ++..++ +++.++++.+|+.+.. |+.+ +.||||||||++|||+++++|++++||
T Consensus 423 ~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD 494 (571)
T TIGR02203 423 ANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD 494 (571)
T ss_pred HHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99998653 112232 4566677776665432 2333 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ ...+.||+|++|++|+++..|+.++..+
T Consensus 495 Epts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 495 EATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred CccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 9999999999999999999875 368999999987 5678899999999999999999988753
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=334.42 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=166.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~ 112 (606)
++++.+|+|+|+++++||+++|+||||||||||||+|+|..+.+.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 270 ~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 349 (490)
T PRK10938 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDY 349 (490)
T ss_pred ECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhc
Confidence 3446799999999999999999999999999999999997642258999999986532 124567999999876544
Q ss_pred --CCCHHHHHHHHHHc--cCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 113 --SLTVEQTLYYAAHL--SIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 113 --~lTV~e~l~f~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
..|+.+++.++... ....... .+.+++++++++.+++.+ ..++++++|||||||||+||+||+.+|++++||||
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP 428 (490)
T PRK10938 350 RVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEP 428 (490)
T ss_pred ccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 35777776544211 0001112 223457889999999997 88999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh-cCCeEEEEcCCeEEEec
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~-~~D~v~vL~~G~~v~~G 244 (606)
|+|||+.++..+.+.|++++++.+.|+|+++|+. +++.+ ++|++++|++|+++..-
T Consensus 429 t~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 429 LQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999875456799999975 46766 58999999999988753
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=341.85 Aligned_cols=197 Identities=19% Similarity=0.346 Sum_probs=166.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++.. ..+|+.++|++|++.+|+. |+
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti 405 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TV 405 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC-CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc-cH
Confidence 569999999999999999999999999999999999987 789999999998753 3567889999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-----------hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-----------NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----------~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..+. +++.++++..++. ...++....||||||||++|||||+++|++++||
T Consensus 406 ~~Ni~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlD 476 (569)
T PRK10789 406 ANNIALGRP-----DATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILD 476 (569)
T ss_pred HHHHhcCCC-----CCCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999977521 2232 2334444444443 2333445679999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++. ..+.+|++++|++|+++..|+.+++.+
T Consensus 477 Epts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 477 DALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred CccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999874 4789999999873 457799999999999999999888754
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=291.24 Aligned_cols=179 Identities=19% Similarity=0.283 Sum_probs=152.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+++ +|+++++||+++|+|+||||||||+|+|+|..+ +.+|+|.++|.++... .++.++|++|+..+++.+||.||
T Consensus 14 ~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~g~~i~~~-~~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 14 KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ-PSSGNIYYKNCNINNI-AKPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCcccChh-hhhhEEeccCCcCCCccCCHHHH
Confidence 44555 999999999999999999999999999999987 7899999999887532 23568999999888889999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+..... . ..+++.++++.+++.+..++.++.||||||||++||++++.+|+++++||||+|||+.++..+
T Consensus 91 l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l 162 (195)
T PRK13541 91 LKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162 (195)
T ss_pred HHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 98865421 1 134577889999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
.+.|++..+ .++|+|+++|++. ..+.+|-+
T Consensus 163 ~~~l~~~~~-~~~tiii~sh~~~--~i~~~~~~ 192 (195)
T PRK13541 163 NNLIVMKAN-SGGIVLLSSHLES--SIKSAQIL 192 (195)
T ss_pred HHHHHHHHh-CCCEEEEEeCCcc--ccchhhee
Confidence 999987654 5899999999863 33446654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=283.31 Aligned_cols=147 Identities=30% Similarity=0.455 Sum_probs=133.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|
T Consensus 12 ~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q-------- 82 (163)
T cd03216 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAMVYQ-------- 82 (163)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEEEEe--------
Confidence 4579999999999999999999999999999999999987 789999999988753 124567888888
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||||||||++||+||+.+|+++++||||+|||+.
T Consensus 83 ----------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~ 116 (163)
T cd03216 83 ----------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPA 116 (163)
T ss_pred ----------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHH
Confidence 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
++..+.+.|+++++ .+.|+|+++|++ +++.+.+|++++|++|++++
T Consensus 117 ~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 117 EVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999975 488999999975 46888999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=341.61 Aligned_cols=197 Identities=23% Similarity=0.391 Sum_probs=166.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+.+|+|+|++++|||.++|+|+||||||||+|+|+|+.+ +.+|+|.+||.++++ ..+++.++|++|++.+|+. |+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti 430 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA-SV 430 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccc-cH
Confidence 579999999999999999999999999999999999998 788999999998753 3567889999999998875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..+. +++.++++..++.+.. .+....||||||||++||||++++|+++++|
T Consensus 431 ~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 431 MENIRYGRP-----DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred HHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 999977421 1222 3455566666554322 2334569999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++..+.+.|+++. .++|+|+++|++ +..+.+|||++|++|+++..|+.++..+
T Consensus 502 Epts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~--~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 502 EATSALDAESEQLVQQALETLM--KGRTTLIIAHRL--ATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred CcccccCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 9999999999999999999985 378999999986 4567899999999999999999887643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.67 Aligned_cols=199 Identities=22% Similarity=0.373 Sum_probs=167.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|. ..++|++|++.+++.+||.|
T Consensus 13 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 13 AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE-PSAGNVSLDPN--------ERLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEeccCCcCCCCcHHH
Confidence 4579999999999999999999999999999999999987 78899999872 35999999999999999999
Q ss_pred HHHHHHH-c-----------cCCC-C----------------CCHHHHHHHHHHHHHHcCCchhh-cccCCCCCHHHHHH
Q psy10223 119 TLYYAAH-L-----------SIGP-Q----------------VSRYVRNARIRQVLADLALSNVA-RRNISELTPSEHRR 168 (606)
Q Consensus 119 ~l~f~~~-~-----------~~~~-~----------------~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~LSgGerqR 168 (606)
++.++.. . ..+. . ....+.++++.++++.+|+.+.. ++++.+||||||||
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qr 163 (530)
T PRK15064 84 TVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLR 163 (530)
T ss_pred HHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHH
Confidence 9987531 0 0000 0 00012245688899999998644 57899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE-EEecChh
Q psy10223 169 VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL-IYAGPTR 247 (606)
Q Consensus 169 vsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~-v~~G~~~ 247 (606)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++ .+.|||+++|+. +.+.++||++++|++|++ ++.|+.+
T Consensus 164 v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tiiivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~ 238 (530)
T PRK15064 164 VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMIIISHDR-HFLNSVCTHMADLDYGELRVYPGNYD 238 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEEEEeCCH-HHHHhhcceEEEEeCCEEEEecCCHH
Confidence 9999999999999999999999999999999999863 478999999875 578899999999999999 5889888
Q ss_pred HHHH
Q psy10223 248 LMLE 251 (606)
Q Consensus 248 ~~~~ 251 (606)
+..+
T Consensus 239 ~~~~ 242 (530)
T PRK15064 239 EYMT 242 (530)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=332.89 Aligned_cols=205 Identities=19% Similarity=0.335 Sum_probs=170.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCC---CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRT---DLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~---~~~~ 112 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|+. .+++
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE-KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYA 339 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc-CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCccc
Confidence 358999999999999999999999999999999999987 7899999999887531 2356699999985 3788
Q ss_pred CCCHHHHHHHHH-H-ccCCCC-CCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 113 SLTVEQTLYYAA-H-LSIGPQ-VSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~-~-~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.+|+.++..+.. . ...... ..+...+++++++++.+++. +..++++++|||||||||+||++++.+|+||+|||||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 899887743221 0 000001 12233456788999999995 5679999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChh
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~ 247 (606)
+|||+.++.++++.|+++++ .|.|+|+++|+. +++.++|||+++|++|+++..++++
T Consensus 420 ~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 420 RGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred cccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999976 489999999975 5788999999999999999877653
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=333.81 Aligned_cols=197 Identities=26% Similarity=0.337 Sum_probs=166.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+||+|++||+++|+||||||||||||+|+|..+ +++|+|.+++ +..++|++|++.+++.+||.|
T Consensus 19 ~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~-p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e 89 (556)
T PRK11819 19 KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFEGEARPAP--------GIKVGYLPQEPQLDPEKTVRE 89 (556)
T ss_pred CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecC--------CCEEEEEecCCCCCCCCcHHH
Confidence 3679999999999999999999999999999999999987 7889999874 246999999999999999999
Q ss_pred HHHHHHHc-c------------CCCCCC--------------------HHHHHHHHHHHHHHcCCchhhcccCCCCCHHH
Q psy10223 119 TLYYAAHL-S------------IGPQVS--------------------RYVRNARIRQVLADLALSNVARRNISELTPSE 165 (606)
Q Consensus 119 ~l~f~~~~-~------------~~~~~~--------------------~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe 165 (606)
++.++... . ...... ..+..+++.++++.+|+.. .++++++|||||
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~LSgGq 168 (556)
T PRK11819 90 NVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WDAKVTKLSGGE 168 (556)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-ccCchhhcCHHH
Confidence 99875320 0 000000 0012356788999999964 789999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-Eec
Q psy10223 166 HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAG 244 (606)
Q Consensus 166 rqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G 244 (606)
||||+||++|+.+|+++||||||+|||+.++..+.+.|+++ +.|+|+++|++ +.+.+.||+|++|++|+++ +.|
T Consensus 169 kqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g 243 (556)
T PRK11819 169 RRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEG 243 (556)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999876 24889988875 5788999999999999986 788
Q ss_pred ChhHHH
Q psy10223 245 PTRLML 250 (606)
Q Consensus 245 ~~~~~~ 250 (606)
+.++..
T Consensus 244 ~~~~~~ 249 (556)
T PRK11819 244 NYSSWL 249 (556)
T ss_pred CHHHHH
Confidence 877653
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=303.88 Aligned_cols=186 Identities=24% Similarity=0.364 Sum_probs=152.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 50 ~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~-p~~G~I~i~g----------~i~yv~q~~~l~~~-tv~en 117 (282)
T cd03291 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE-PSEGKIKHSG----------RISFSSQFSWIMPG-TIKEN 117 (282)
T ss_pred ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC----------EEEEEeCccccccc-CHHHH
Confidence 469999999999999999999999999999999999987 7899999987 38999999988875 99999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----------hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----------VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----------~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+.+.... .. .++.+.++.+++.+ ..++.++.|||||||||+||++|+.+|++++|||||
T Consensus 118 l~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt 187 (282)
T cd03291 118 IIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (282)
T ss_pred hhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9874321 11 11223333344332 223446799999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSML-SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L-~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++..+.+.+ +.++ .+.|+|+++|++. .+ ..||++++|++|++++.|+++++..
T Consensus 188 ~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 188 GYLDVFTEKEIFESCVCKLM--ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred ccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999865 5553 3689999999864 44 6899999999999999999887653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.91 Aligned_cols=197 Identities=26% Similarity=0.317 Sum_probs=164.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+++ +..++|++|++.+++.+||.|+
T Consensus 18 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~-p~~G~i~~~~--------~~~i~~v~Q~~~~~~~~tv~e~ 88 (552)
T TIGR03719 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK-EFNGEARPAP--------GIKVGYLPQEPQLDPTKTVREN 88 (552)
T ss_pred CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecC--------CCEEEEEeccCCCCCCCcHHHH
Confidence 579999999999999999999999999999999999987 7889999875 2469999999999999999999
Q ss_pred HHHHHHc-cC-----------CCCCCHH---------------------HHHHHHHHHHHHcCCchhhcccCCCCCHHHH
Q psy10223 120 LYYAAHL-SI-----------GPQVSRY---------------------VRNARIRQVLADLALSNVARRNISELTPSEH 166 (606)
Q Consensus 120 l~f~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer 166 (606)
+.++... +. ....... ....++.++++.+|+.. .+++++.||||||
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqk 167 (552)
T TIGR03719 89 VEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WDADVTKLSGGER 167 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-ccCchhhcCHHHH
Confidence 9875321 00 0000010 01245677888888864 6889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecC
Q psy10223 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGP 245 (606)
Q Consensus 167 qRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~ 245 (606)
|||+||++|+.+|++++|||||++||+.++..+.+.|+++ +.|+|+++|+. +.+..+||++++|++|+++ +.|+
T Consensus 168 qrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~ 242 (552)
T TIGR03719 168 RRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGN 242 (552)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCC
Confidence 9999999999999999999999999999999999999875 24889988865 5788999999999999976 7798
Q ss_pred hhHHHH
Q psy10223 246 TRLMLE 251 (606)
Q Consensus 246 ~~~~~~ 251 (606)
.++..+
T Consensus 243 ~~~~~~ 248 (552)
T TIGR03719 243 YSSWLE 248 (552)
T ss_pred HHHHHH
Confidence 877554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=281.10 Aligned_cols=151 Identities=26% Similarity=0.373 Sum_probs=135.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|. +.++|++|++.++ ..||.||
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~q~~~~~-~~tv~~n 83 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-WGSGRIGMPEG--------EDLLFLPQRPYLP-LGTLREQ 83 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECCC--------ceEEEECCCCccc-cccHHHH
Confidence 569999999999999999999999999999999999987 78999999863 5799999998765 6799999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+. .++.||||||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 84 l~~~---------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l 130 (166)
T cd03223 84 LIYP---------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRL 130 (166)
T ss_pred hhcc---------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHH
Confidence 8642 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.+.|+++ ++|+|+++|++. ..+.||++++|++|-
T Consensus 131 ~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 131 YQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999875 579999999863 457999999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=331.78 Aligned_cols=192 Identities=20% Similarity=0.348 Sum_probs=165.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC--CCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD--LIPSL 114 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~--~~~~l 114 (606)
++++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|. +.++|++|+.. +++.+
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE-PDSGTVKWSEN--------ANIGYYAQDHAYDFENDL 399 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCc--------eEEEEEcccccccCCCCC
Confidence 334579999999999999999999999999999999999987 78899999873 46999999864 56789
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.|++.+... . . ..+++++++++.+++. +..++++++|||||||||+||++|+.+|++++|||||+|||+
T Consensus 400 t~~~~~~~~~~---~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 400 TLFDWMSQWRQ---E---G--DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM 471 (530)
T ss_pred cHHHHHHHhcc---C---C--ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99999864211 1 1 1235678899999994 678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~ 250 (606)
.++..+.+.|+++ +.|+|+++|++ +.+.++||++++|++|+++ +.|+.++..
T Consensus 472 ~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 524 (530)
T PRK15064 472 ESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVVDFSGTYEEYL 524 (530)
T ss_pred HHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEcCCCHHHHH
Confidence 9999999999875 34899999975 5788899999999999998 889887654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=293.35 Aligned_cols=173 Identities=26% Similarity=0.417 Sum_probs=159.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..+++||||++++||.++|+|+||||||||-|+|.|+.+ +++|+|.++|+++... .
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G~i~f~g~~i~~~--~--------------------- 81 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE-PTSGEILFEGKDITKL--S--------------------- 81 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCceEEEcCcchhhc--c---------------------
Confidence 579999999999999999999999999999999999998 8999999999986421 1
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
+.+..+++.++|+.+|+.. .+++++++||||||||+.|||||+.+|+++++|||||.||.+.+.+
T Consensus 82 --------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaq 147 (268)
T COG4608 82 --------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQ 147 (268)
T ss_pred --------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHH
Confidence 2345678999999999975 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++|+++.++.|.|.+.++|+. +-+..++||+.||+.|++|+.|+.+++..
T Consensus 148 IlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 148 ILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCceeEecCHHHHhh
Confidence 99999999999999999999964 57899999999999999999999998854
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=280.91 Aligned_cols=207 Identities=27% Similarity=0.412 Sum_probs=181.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC-EeCCc----ccccCeEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-TPMSP----QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G-~~~~~----~~~~~~i~yv~q~~~~~~~l 114 (606)
..+|+|+||++.+||+-+|+|||||||||+|++|+|..+ |..|++.++| .++.. +..|..||--+|.+..|+.+
T Consensus 18 F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr-p~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l 96 (249)
T COG4674 18 FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR-PQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL 96 (249)
T ss_pred eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC-CCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc
Confidence 469999999999999999999999999999999999987 7889999999 66643 22466789999999999999
Q ss_pred CHHHHHHHHHHccCCC-----CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 115 TVEQTLYYAAHLSIGP-----QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
||+|||..+.+...+- ...+.+.+.+++++|+..||.+..|.....||.||||++.|++.++++|++|++|||++
T Consensus 97 tV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvA 176 (249)
T COG4674 97 TVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVA 176 (249)
T ss_pred cHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccC
Confidence 9999999987542110 01123456789999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+-.+...+..++|+.++. +.+|+++-| +...+.+++|||.||++|.+...|+.+++.
T Consensus 177 GMTd~Et~~taeLl~~la~--~hsilVVEH-DM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 177 GMTDAETEKTAELLKSLAG--KHSILVVEH-DMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred CCcHHHHHHHHHHHHHHhc--CceEEEEec-cHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 9999999999999999974 567777765 578999999999999999999999998875
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=281.27 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=175.2
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCccc---ccCeEEEEcCCCC--CC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQL---FQTTCGYVNHRTD--LI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~---~~~~i~yv~q~~~--~~ 111 (606)
...+++|+++|++|..||++.|+|.||||||||+|+|+|... +++|+|.++|.+++... ....++-|+|++. ..
T Consensus 16 ~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~-~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 16 PLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc-cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 345789999999999999999999999999999999999998 89999999999987521 2335778899975 79
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|.||++||+..+......++.+. ...++..++-++.+ ||++..++++.-|||||||-|+++.|.++.|+||+|||
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDE 174 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDE 174 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecc
Confidence 99999999998875422222332 12233344555554 77899999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
-|++|||.++..+++.-.+..++.+.|.++++|+ .+++.++-+|.++|++|+||.+
T Consensus 175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHn-m~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHN-MEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhhcCCcchHHHHHHHHHHHHHhcCCceEEEecc-HHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999999999999998889999999986 5789999999999999999976
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=360.51 Aligned_cols=201 Identities=20% Similarity=0.374 Sum_probs=168.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC---------------------------------------
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--------------------------------------- 79 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--------------------------------------- 79 (606)
++++|+|+|+++++||.+||+||||||||||+++|.|++++
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 35799999999999999999999999999999999999873
Q ss_pred --------------CCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHH
Q psy10223 80 --------------TTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142 (606)
Q Consensus 80 --------------~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~ 142 (606)
+.+|+|++||.++.. +.+|+.++||+|++.+|+ .|++|||.++.. ..+. ++++
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~at~----eeI~ 1329 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----DATR----EDVK 1329 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----CCCH----HHHH
Confidence 158999999999853 458899999999999996 599999998632 2333 3355
Q ss_pred HHHHHcCCch-------hhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy10223 143 QVLADLALSN-------VARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211 (606)
Q Consensus 143 ~~l~~lgL~~-------~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g 211 (606)
++++..++.+ -.|+.+ ..||||||||++|||||+++|+||+||||||+||+.+...+.+.|+++.+..+
T Consensus 1330 ~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~ 1409 (1466)
T PTZ00265 1330 RACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKAD 1409 (1466)
T ss_pred HHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCC
Confidence 5555554432 234444 46999999999999999999999999999999999999999999999853357
Q ss_pred cEEEEEecCCcchHHhcCCeEEEEcC----CeEE-EecChhHHHH
Q psy10223 212 RAVLLTMEKPRSDVLPFLDRTAYLCL----GDLI-YAGPTRLMLE 251 (606)
Q Consensus 212 ~tii~t~h~~~~~i~~~~D~v~vL~~----G~~v-~~G~~~~~~~ 251 (606)
+|+|+++|++ +..+.||+|++|++ |+++ +.|+.+++++
T Consensus 1410 ~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1410 KTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred CEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999986 45678999999999 9955 8999998863
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.88 Aligned_cols=184 Identities=22% Similarity=0.270 Sum_probs=163.2
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
.|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++ ..++|++|+..+.+.+||+|++.
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l~ 422 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLLR 422 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEe----------eeEEEecccccCCCCCcHHHHHH
Confidence 5999999999999999999999999999999999987 789999885 15899999988889999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~ 201 (606)
+.... ... ...++++++.+++.+..++++.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+
T Consensus 423 ~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~ 494 (590)
T PRK13409 423 SITDD-----LGS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAK 494 (590)
T ss_pred HHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 75321 111 2346889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 202 MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 202 ~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
.|++++++.|+|+|+++|+. +.+..++||+++|+ |++...|..
T Consensus 495 ~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~~ 537 (590)
T PRK13409 495 AIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGHA 537 (590)
T ss_pred HHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeeec
Confidence 99999876789999999975 57889999999996 577776653
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=324.46 Aligned_cols=193 Identities=20% Similarity=0.324 Sum_probs=162.2
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLT 115 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lT 115 (606)
++++.+|+|+|++|++||+++|+||||||||||||+|+|+.+ +.+|+|.+++. ..++|++|+. .+++.+|
T Consensus 334 ~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~-p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 334 FGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ-PDSGTIKIGET--------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred ECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCc--------eEEEEEeCchhhcCCCCC
Confidence 344679999999999999999999999999999999999987 78999998541 1599999996 6889999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
|.|++.+...... ... ...+.+++++.+++.+ ..++++++|||||||||+||++|+.+|++++|||||+|||+.
T Consensus 405 v~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 479 (556)
T PRK11819 405 VWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479 (556)
T ss_pred HHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 9999988653211 111 1223567899999974 579999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEE-EecChhH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLI-YAGPTRL 248 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v-~~G~~~~ 248 (606)
++..+.+.|+++. + |+|+++|++ +.+.++||++++|++ |+++ +.|+.++
T Consensus 480 ~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 480 TLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999862 3 788888875 578899999999986 7776 5666544
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.13 Aligned_cols=187 Identities=20% Similarity=0.301 Sum_probs=159.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.. ..+|+.++|++|++.+|+. |+
T Consensus 336 ~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti 413 (547)
T PRK10522 336 GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LL 413 (547)
T ss_pred CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHH-hh
Confidence 469999999999999999999999999999999999988 789999999999763 3578899999999988865 67
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc-----CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-----ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+|| . .. ..++++.++++.+++.+..+.. ...||||||||++||||++++|++++|||||++|
T Consensus 414 ~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L 480 (547)
T PRK10522 414 GPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480 (547)
T ss_pred ccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 666 0 11 1234577888888887643321 3589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
|+.+...+.+.|.+..++.++|+|+++|++ +..+.+|++++|++|+++..
T Consensus 481 D~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 481 DPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEEEe
Confidence 999999999999876544578999999986 46788999999999999866
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=295.62 Aligned_cols=189 Identities=22% Similarity=0.320 Sum_probs=160.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-----------ECCEeCCcc--c-cc--CeEEEE
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----------LDGTPMSPQ--L-FQ--TTCGYV 104 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-----------~~G~~~~~~--~-~~--~~i~yv 104 (606)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+ +++|+|. ++|.++... . .+ ..++|+
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 5999999 599999999999999999999999999988 7899996 778776421 1 11 247899
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
+|...+++. ++.+++.+... ....++++.++++.+|+.+..++.++.||||||||++||++|+.+|+++++
T Consensus 93 ~~~~~~~~~-~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 163 (255)
T cd03236 93 PQYVDLIPK-AVKGKVGELLK--------KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFF 163 (255)
T ss_pred cchhccCch-HHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 998888884 88888876431 123346678999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
||||+|||+.++..+.+.|+++++ .++|+|+++|++ +.+.++||++++|+ |++.+.
T Consensus 164 DEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 164 DEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEC-CCCCcc
Confidence 999999999999999999999976 478999999975 57788999999995 555543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=322.90 Aligned_cols=192 Identities=21% Similarity=0.332 Sum_probs=161.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV 116 (606)
+++.+|+|+|++|++||+++|+|||||||||||++|+|+.+ +.+|+|.+++. ..++|++|+. .+++.+||
T Consensus 333 ~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 333 GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ-PDSGTIKIGET--------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEECCc--------eEEEEEeCCccccCCCCcH
Confidence 34679999999999999999999999999999999999987 78999998542 1599999986 48889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.|++.+..... ..... ..+++++++.+++.+ ..++++..|||||||||+||++|+.+|++++|||||+|||+.+
T Consensus 404 ~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~ 478 (552)
T TIGR03719 404 WEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478 (552)
T ss_pred HHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Confidence 99998865321 11111 224567899999974 5799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-CeEE-EecChhH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-GDLI-YAGPTRL 248 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-G~~v-~~G~~~~ 248 (606)
+..+.+.|+++. + |+|+++|++ +.+.++||++++|++ |+++ +.|+.++
T Consensus 479 ~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 479 LRALEEALLEFA---G-CAVVISHDR-WFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 999999999872 3 788888875 578899999999987 5776 5566543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=356.96 Aligned_cols=196 Identities=22% Similarity=0.326 Sum_probs=167.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++|+|||.+||+||+|||||||+++|.|+.+ +.+|+|.+||.+++. ..+|+++++|+|++.+|+. |+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TI 1329 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE-LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TV 1329 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCCceEEECCEecccCCHHHHHhccEEECCCCccccc-cH
Confidence 469999999999999999999999999999999999988 789999999999864 4578999999999999987 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRN----ISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~----v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.... ..++ +++.++++..++.+. .|+. ...||||||||++|||||+++|+||+||
T Consensus 1330 reNLd~~~------~~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130 1330 RFNLDPFN------EHND----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred HHHhCcCC------CCCH----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99997532 1222 345666666655432 2333 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|++.. .++|+|+++|... ....||||+||++|+++++|+++++++
T Consensus 1400 EATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~--tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1400 EATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLN--TIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999874 4799999999763 455699999999999999999999874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=308.12 Aligned_cols=203 Identities=24% Similarity=0.399 Sum_probs=171.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+||.+++||.++|+||||||||||.|+|.|..+ +.+|.|++||-+++. +.+-++|||+||+-.+|+. |
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~-p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-T 425 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-T 425 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc-cCCCcEEecchhhhcCCHHHhccccCcCcccceecCC-c
Confidence 4689999999999999999999999999999999999987 789999999988753 4577899999999999997 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHH-----HHHHHHHHHHcCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVR-----NARIRQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|.||+.-.. .+.+.+.. ...+.+++- .+.+-.|+.+ ..||||||||+++||||-.+|.+++|||
T Consensus 426 IaeNIaRf~-----~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDE 498 (580)
T COG4618 426 IAENIARFG-----EEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498 (580)
T ss_pred HHHHHHhcc-----ccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecC
Confidence 999984221 12222111 112333332 3444556665 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
|-++||......+.+.|....+ .|.|+|+++|.| .+...+|||++|++|++-.+|+.+|++...
T Consensus 499 PNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 499 PNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred CCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999865 588888889987 588999999999999999999999998865
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=324.23 Aligned_cols=188 Identities=19% Similarity=0.311 Sum_probs=158.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ |.+|+|.+||.++.. ..+|+.++|++|++.+|+. |+
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~-p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti 432 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI-PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LI 432 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhh-hh
Confidence 369999999999999999999999999999999999988 789999999998864 3467889999999988865 77
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC------CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI------SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
++|+. + ...++++.++++.+++.+..+..+ ..||||||||++||||++.+|++++|||||++
T Consensus 433 ~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~ 500 (555)
T TIGR01194 433 GPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500 (555)
T ss_pred hcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 77731 1 123456788899999877654433 56999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
||+.+..++.+.+.+..+..++|+|+++|++ +..+.||+|++|++|+++..
T Consensus 501 LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~--~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDD--QYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeccH--HHHHhCCEEEEEECCEEEEe
Confidence 9999999999876532233589999999986 35689999999999999764
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=326.30 Aligned_cols=181 Identities=29% Similarity=0.471 Sum_probs=153.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++++|||.++|+||||||||||+|+|+|+.+ +.+|+|.+||.++++ +.+|+.++||+|++.+|+. |+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti 412 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD-PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TI 412 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCc-CH
Confidence 479999999999999999999999999999999999998 789999999998753 4578899999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------c----ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------R----RNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~----~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ..++ +++.++++..++.+.. | +....||||||||++|||||+++|++++||
T Consensus 413 ~~Ni~~~~~-----~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD 483 (529)
T TIGR02857 413 AENIRLARP-----DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483 (529)
T ss_pred HHHHhccCC-----CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999987532 1222 3455666666654322 2 334579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
|||++||+.+...+.+.|+++. .++|+|+++|++ +..+.||+|++|
T Consensus 484 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~i~~l 529 (529)
T TIGR02857 484 EPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL--ALAERADRIVVL 529 (529)
T ss_pred CcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH--HHHHhCCEEEeC
Confidence 9999999999999999999875 478999999986 345789999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=358.06 Aligned_cols=196 Identities=19% Similarity=0.296 Sum_probs=167.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|++|+|||.+||+||||||||||+++|.|+.+ +.+|+|.+||.+++. ..+|++++||+|++.+|+. |+
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~-p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TI 1326 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE-LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TV 1326 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cH
Confidence 579999999999999999999999999999999999988 789999999999854 4578999999999999986 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cc----cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RR----NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~----~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.... ..+. +++.++++..++.+.. |+ ....||||||||++|||||+++|+||+||
T Consensus 1327 r~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILD 1396 (1495)
T PLN03232 1327 RFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396 (1495)
T ss_pred HHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99997531 2232 3455666666554322 33 33579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|++.. .++|+|+++|+. +....||||++|++|+++++|+++++++
T Consensus 1397 EATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1397 EATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL--NTIIDCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred CCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999874 479999999986 3455699999999999999999999864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=294.88 Aligned_cols=211 Identities=26% Similarity=0.363 Sum_probs=186.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC----CeeEEEECCEeCC---ccc---cc-CeEEEEcC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMS---PQL---FQ-TTCGYVNH 106 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~----~~G~I~~~G~~~~---~~~---~~-~~i~yv~q 106 (606)
+...++++|||++++||.+||+|.||||||-..+.|.++++.+ .+|+|.|+|.++- +.. .| .+|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 4578999999999999999999999999999999999987632 3699999999863 222 33 37999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 107 RTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 107 ~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
++. +.|-.|+...+.-..+++ +++++.+.++++.++|+.+|+.+ ..+.++++|||||||||.||.||+.+|++
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~l 178 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCe
Confidence 984 888899999888877764 35778888899999999999964 56889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.||||++||...+.+|+++|+++.++.|..+++++|+. .-+-+++|||+||.+|++++.|+++++..
T Consensus 179 LIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~ADrV~VM~~G~ivE~~~t~~lF~ 247 (534)
T COG4172 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFADRVYVMQHGEIVETGTTETLFA 247 (534)
T ss_pred EeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhhhEEEEeccEEeecCcHHHHhh
Confidence 9999999999999999999999999999999999999964 57889999999999999999999988753
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.84 Aligned_cols=169 Identities=25% Similarity=0.423 Sum_probs=144.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++|+|+|+++++||.++|+||||||||||+|+|+|..+ +.+|+|.+||.++.+ +.+|+.++||+|++.+|+. |++
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~ 425 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD-PLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVR 425 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhHHHHHHhheEEEccCcccccc-cHH
Confidence 469999999999999999999999999999999999998 789999999988753 4578899999999999976 999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
||+.++.. ..++ +++.++++..++.+. .|+.+ ..||||||||++|||||+++|++++|||
T Consensus 426 eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 426 DNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred HHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99988531 2222 446667777666543 24433 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
||++||+.+...+.+.|+++. .++|+|+++|++
T Consensus 497 ~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred CcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 999999999999999999864 478999999963
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=323.25 Aligned_cols=193 Identities=22% Similarity=0.327 Sum_probs=163.7
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC--CCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT--DLIPS 113 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~--~~~~~ 113 (606)
.++++.+|+|+|++|++||+++|+||||||||||||+|+|..+ +++|+|.+++. ..++|++|+. .+.+.
T Consensus 321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~ 391 (638)
T PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKG--------IKLGYFAQHQLEFLRAD 391 (638)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEEECCC--------EEEEEecCcchhhCCcc
Confidence 3345679999999999999999999999999999999999987 78999998641 2589999974 35566
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.|+.+++.- . . .....++++++|+.+++. +..+++++.|||||||||+||++|+.+|++|+|||||+|||
T Consensus 392 ~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 392 ESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred chHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 788776531 1 1 112345688999999996 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~~ 251 (606)
+.++..+.+.|+++ .| |||+++|+. ..+.++||++++|++|+++ +.|+.++..+
T Consensus 463 ~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999886 24 899998864 5788999999999999997 8899887644
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=337.18 Aligned_cols=206 Identities=25% Similarity=0.453 Sum_probs=191.8
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++++|+.|++||+.+++|+|||||||++|+|.|..+ +++|++.++|.++.. ...++.+||+||+|.+++.+|.+
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~-~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r 658 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK-PTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR 658 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc-CCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence 9999999999999999999999999999999999988 889999999998753 23678899999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|+|.+.++++ ++++.+.++.++.+++.++|.+.+|+.++.+|||+|||+++|.|++.+|++++|||||+|+||.+++
T Consensus 659 EhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr 735 (885)
T KOG0059|consen 659 EHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARR 735 (885)
T ss_pred HHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHH
Confidence 9999999976 4566667778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
.++++++++.+ +|+.+|+|+|. .+|...+|||+.+|.+|++...|++++++..|
T Consensus 736 ~lW~ii~~~~k-~g~aiiLTSHs-MeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 736 HLWDIIARLRK-NGKAIILTSHS-MEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHHHHHHHh-cCCEEEEEcCC-HHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 99999999976 46699999885 78999999999999999999999999999876
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=271.50 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=133.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+++|+|+|+++++||+++|+||||||||||||+|.+ .+|++.++|.... ..+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~--~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPK--FSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCcccc--cccccEEEEhH------------
Confidence 3579999999999999999999999999999999853 4699999876321 12345778766
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCCHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKD--PVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~--p~llllDEPTsgLD~~~ 195 (606)
.++++.+++.. ..+++++.||||||||++||++|+.+ |+++++||||+|||+.+
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~ 124 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD 124 (176)
T ss_pred -----------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH
Confidence 24677888876 47899999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
+..+.+.|+++++ .|+|+|+++|++. . .+.+|++++|.+|+.
T Consensus 125 ~~~l~~~l~~~~~-~g~tvIivSH~~~-~-~~~~d~i~~l~~g~~ 166 (176)
T cd03238 125 INQLLEVIKGLID-LGNTVILIEHNLD-V-LSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCHH-H-HHhCCEEEEECCCCC
Confidence 9999999999875 6899999999864 4 478999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=348.06 Aligned_cols=195 Identities=21% Similarity=0.414 Sum_probs=159.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE-CCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL-DGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~-~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++|+|+|+++++||+++|+||||||||||+++|+|+++ |.+|+|.+ +|.++.. ..+|+.++||+|++.+|+. |
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-T 475 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD-PTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-S 475 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc-CCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhc-c
Confidence 479999999999999999999999999999999999998 78999999 5676642 3467889999999999985 9
Q ss_pred HHHHHHHHHHccC----------CC-----------------------------CC---------CHHHHHHHHHHHHHH
Q psy10223 116 VEQTLYYAAHLSI----------GP-----------------------------QV---------SRYVRNARIRQVLAD 147 (606)
Q Consensus 116 V~e~l~f~~~~~~----------~~-----------------------------~~---------~~~~~~~~v~~~l~~ 147 (606)
|+||+.++..... +. .. ......+++.++++.
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~ 555 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKK 555 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHH
Confidence 9999998631000 00 00 000123457777777
Q ss_pred cCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q psy10223 148 LALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216 (606)
Q Consensus 148 lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~ 216 (606)
+++.+.. ++....||||||||++|||||+++|+||+|||||++||+.++..+.+.|+++.++.|+|+|+
T Consensus 556 ~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 556 VLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 (1466)
T ss_pred hCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 7775542 34567899999999999999999999999999999999999999999999987545899999
Q ss_pred EecCCcchHHhcCCeEEEEcCC
Q psy10223 217 TMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 217 t~h~~~~~i~~~~D~v~vL~~G 238 (606)
++|++. . .+.||+|++|++|
T Consensus 636 IsHrls-~-i~~aD~Iivl~~g 655 (1466)
T PTZ00265 636 IAHRLS-T-IRYANTIFVLSNR 655 (1466)
T ss_pred EeCCHH-H-HHhCCEEEEEeCC
Confidence 999864 3 4789999999986
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=332.07 Aligned_cols=205 Identities=21% Similarity=0.383 Sum_probs=172.2
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~ 112 (606)
..++.+||+|+|+++++|+-+||+|||||||||...+|-..++ |+.|.|.+||.+++. +.+|++++.|.|+|.||.
T Consensus 999 sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~ 1077 (1228)
T KOG0055|consen 999 TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN 1077 (1228)
T ss_pred CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC-CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc
Confidence 4456789999999999999999999999999999999999888 789999999999864 458999999999999997
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH-HH--cCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL-AD--LALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l-~~--lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
. |++||+.++.. ..+..+..+..+.+- .. .+|.+-.|+.+ .+||||||||++||||+++||+|||||
T Consensus 1078 ~-TIrENI~YG~~-----~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1078 G-TIRENIAYGSE-----EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD 1151 (1228)
T ss_pred c-cHHHHHhccCC-----CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee
Confidence 5 99999999821 244433322221111 11 14555556665 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|.||+||+++.+.+-+.|.+.. .|+|.|++.|.. ...+.||.|+|+++|++++.|+-+++++
T Consensus 1152 EATSALDseSErvVQeALd~a~--~gRT~IvIAHRL--STIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1152 EATSALDSESERVVQEALDRAM--EGRTTIVIAHRL--STIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecch--hhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 9999999999999999999974 478888888975 4678899999999999999999999876
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=353.10 Aligned_cols=196 Identities=21% Similarity=0.310 Sum_probs=167.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
.++|+|+|++|+|||.+||+||+|||||||+++|.|+.+ +.+|+|.+||.+++. ..+|+++++|+|++.+|+. |+
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~-~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TI 1376 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE-SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SL 1376 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc-CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCc-cH
Confidence 469999999999999999999999999999999999987 788999999999864 4578999999999999987 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+|||.... ..++ +++.++++..++.+. .|+.+ ..||||||||++|||||+++|+||+||
T Consensus 1377 r~NLdp~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLD 1446 (1522)
T TIGR00957 1377 RMNLDPFS------QYSD----EEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLD 1446 (1522)
T ss_pred HHHcCccc------CCCH----HHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99996211 1233 345566666655432 34444 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.+...+.+.|++.. .++|+|+++|+. +....+|||++|++|+++++|+++++++
T Consensus 1447 EaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl--~ti~~~DrIlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1447 EATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRL--NTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred CCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999864 478999999986 4566699999999999999999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=349.87 Aligned_cols=207 Identities=21% Similarity=0.321 Sum_probs=173.6
Q ss_pred eeeeeecccc--ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEE
Q psy10223 29 CFQRVFGNIQ--TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGY 103 (606)
Q Consensus 29 ~~~~~~~~~~--~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~y 103 (606)
.|+++.-.+. ..++|+||||+|++||.+||+|++|||||||+++|.|+.+ +.+|+|.+||.++.. +.+|+.++|
T Consensus 1310 ~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~-p~~G~I~IDG~di~~i~l~~LR~~I~i 1388 (1560)
T PTZ00243 1310 VFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE-VCGGEIRVNGREIGAYGLRELRRQFSM 1388 (1560)
T ss_pred EEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEcccCCHHHHHhcceE
Confidence 3555433332 2459999999999999999999999999999999999998 788999999999864 458899999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHH
Q psy10223 104 VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIG 172 (606)
Q Consensus 104 v~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa 172 (606)
|||++.+|+. |++|||.... ..+. +++.++++..++.+. .|+.+ ..||||||||++||
T Consensus 1389 VpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLA 1457 (1560)
T PTZ00243 1389 IPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMA 1457 (1560)
T ss_pred ECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHH
Confidence 9999999986 9999995321 2232 457777777777543 24444 46999999999999
Q ss_pred HHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 173 TQLVKD-PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 173 ~aL~~~-p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+++ |+||+|||||++||+.+...+.+.|++.. .++|+|+++|+. +....||||++|++|+++++|+++++++
T Consensus 1458 RALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1458 RALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRL--HTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999996 89999999999999999999999999864 478999999976 4667899999999999999999999864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.15 Aligned_cols=195 Identities=27% Similarity=0.373 Sum_probs=163.4
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSL 114 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~l 114 (606)
.++++++|+|+|++|++||+++|+||||||||||||+|+|..+ +++|+|.+ |.+ -.++|++|+. .+++.+
T Consensus 328 ~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~-p~~G~i~~-~~~-------~~i~y~~q~~~~l~~~~ 398 (635)
T PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ-ADSGRIHC-GTK-------LEVAYFDQHRAELDPEK 398 (635)
T ss_pred EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEE-CCC-------cEEEEEeCcccccCCCC
Confidence 3345679999999999999999999999999999999999987 78999998 432 2599999975 588999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||.|++.+..... .... ...++.++++.+++. +..+++++.|||||||||+||++|+.+|++|||||||+|||+
T Consensus 399 tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 399 TVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred CHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 9999998754210 1111 234678899999996 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc-CCeEE-EecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC-LGDLI-YAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~-~G~~v-~~G~~~~~ 249 (606)
.++..+.+.|+++ +.|||+++|+. ..+.++||++++|+ +|+++ |.|+-++-
T Consensus 474 ~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 474 ETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 9999999999875 34899988874 57889999999998 89976 45665554
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=270.38 Aligned_cols=150 Identities=19% Similarity=0.287 Sum_probs=130.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++.+++++ +++++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.+ ++|++|+..
T Consensus 11 ~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~---------i~~~~q~~~-------- 71 (177)
T cd03222 11 GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGIT---------PVYKPQYID-------- 71 (177)
T ss_pred CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEE---------EEEEcccCC--------
Confidence 346789885 8999999999999999999999999999987 789999999853 678877532
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe--cChhHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA--GPTRLML 250 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~--G~~~~~~ 250 (606)
.+.+.|++++++.+.|+|+++|++ +.+.++||++++|+++-.++. |++...+
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 162 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPKGTR 162 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCcchh
Confidence 999999998765458999999975 577889999999998876655 6555433
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=272.24 Aligned_cols=205 Identities=19% Similarity=0.328 Sum_probs=183.0
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
....++|+||||++++||.++|+|+||||||||||+|+|.++ |++|+|.++|+-... +- -.-.+.|.+|.
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~-Pt~G~v~v~G~v~~l--i~-------lg~Gf~pelTG 106 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK-PTSGKVKVTGKVAPL--IE-------LGAGFDPELTG 106 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC-CCCceEEEcceEehh--hh-------cccCCCcccch
Confidence 456789999999999999999999999999999999999998 899999999864321 11 11235678999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+-..+ .++++++.+++++++++.-.|.+..|.+++.+|.||+-|++.|.|...+|++|++||-.+-.|+.-+
T Consensus 107 reNi~l~~~~---~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~ 183 (249)
T COG1134 107 RENIYLRGLI---LGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQ 183 (249)
T ss_pred HHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHH
Confidence 9999998764 3578889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHc
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~ 256 (606)
.+-.+.++++.++ ++|+|+++|+. +.+.++|||+++|++|++.+.|.++++.++++..
T Consensus 184 ~K~~~rl~e~~~~-~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 184 EKCLERLNELVEK-NKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred HHHHHHHHHHHHc-CCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcCCHHHHHHHHHHh
Confidence 9999999999764 68999999975 5899999999999999999999999999987653
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=259.76 Aligned_cols=132 Identities=32% Similarity=0.495 Sum_probs=122.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.++|+++|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|. ..++|++|
T Consensus 13 ~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~--------~~i~~~~~------------- 70 (144)
T cd03221 13 KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGST--------VKIGYFEQ------------- 70 (144)
T ss_pred ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCe--------EEEEEEcc-------------
Confidence 469999999999999999999999999999999999987 78999999984 46899988
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
||+|||||++||++|+.+|+++++||||+|||+.++..+
T Consensus 71 -----------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l 109 (144)
T cd03221 71 -----------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEAL 109 (144)
T ss_pred -----------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
.+.|+++ ++|+++++|++ +++.+++|++++|++|+
T Consensus 110 ~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 110 EEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 9999876 36899998875 57888999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=256.01 Aligned_cols=180 Identities=22% Similarity=0.321 Sum_probs=160.0
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~l 114 (606)
+...+|-++|++|.+||++-|||||||||||||..+.|.+.+ ..+|++++|+++++. ...++++|.++||+.+||++
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 345789999999999999999999999999999999998875 347999999998864 34578999999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
+|.+||.|+.. ..+....+++.+...|++.||+...++.+.+||||||-||++-|+|+..|+.++||||+|.||.+
T Consensus 93 sVg~Nl~fAlp----~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~A 168 (213)
T COG4136 93 SVGQNLLFALP----ATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168 (213)
T ss_pred ccccceEEecC----cccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHH
Confidence 99999999863 34444566677889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
-+.++.+..-.-.+..|..++.++|+.
T Consensus 169 LR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 169 LRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 999999988877777788888888853
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=344.91 Aligned_cols=196 Identities=24% Similarity=0.362 Sum_probs=168.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|+|++|++||.+||+|++|||||||+++|.|+.+ .+|+|.+||.+++. ..+|++++|+||++.+|+. |
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-T 1307 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-T 1307 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCcc-C
Confidence 3679999999999999999999999999999999999975 57999999999864 4578999999999999987 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++|||.... ..+ ++++.++++..++.+.. |+.+ ..||||||||++|||||+++|+||+|
T Consensus 1308 IR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlL 1377 (1490)
T TIGR01271 1308 FRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 (1490)
T ss_pred HHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 999995421 122 34577788888775432 3333 36999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+.+.|++.. .++|+|+++|.+ +....||||++|++|+++.+|+++++++
T Consensus 1378 DEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl--~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1378 DEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRV--EALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred eCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH--HHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999864 479999999976 3556699999999999999999998864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=265.25 Aligned_cols=179 Identities=24% Similarity=0.425 Sum_probs=160.1
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~l 114 (606)
.+.+.++.++||++.+||++-|.||||||||||||+|+|+.+ |.+|+|.++|.+++. +.+++.+-|+...+.+-+.|
T Consensus 12 R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL 90 (209)
T COG4133 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL 90 (209)
T ss_pred cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHhhccccccchh
Confidence 345689999999999999999999999999999999999998 889999999988764 23567788999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|||.|....... .....+.++++.+||....|.+++.||-||||||+|||-.++.+++.|||||+++||..
T Consensus 91 Ta~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~ 164 (209)
T COG4133 91 TALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE 164 (209)
T ss_pred hHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH
Confidence 999999998775321 12356889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcc
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRS 223 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~ 223 (606)
....+-.++...++ .|..||.|+|||..
T Consensus 165 g~a~l~~l~~~H~~-~GGiVllttHq~l~ 192 (209)
T COG4133 165 GVALLTALMAAHAA-QGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEecCCccC
Confidence 99999999999886 47789999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=315.48 Aligned_cols=192 Identities=18% Similarity=0.312 Sum_probs=159.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+++ +..++|++|+. .+.+++.++
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~-p~~G~I~~~~--------~~~igyv~Q~~--~~~l~~~~~ 590 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ-PSSGTVFRSA--------KVRMAVFSQHH--VDGLDLSSN 590 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCceEEECC--------ceeEEEEeccc--cccCCcchh
Confidence 469999999999999999999999999999999999987 7889999865 24699999975 345667666
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
.........+ ... .++++++|+.+|+.+ ..+++++.|||||||||+||++|+.+|++|+|||||+|||+.++..
T Consensus 591 ~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~ 665 (718)
T PLN03073 591 PLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665 (718)
T ss_pred HHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHH
Confidence 4432211111 111 356788999999984 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHHHH
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLMLEY 252 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~~~ 252 (606)
+.+.|++. .+ |+|+++|++ ..+..+||++++|++|+++ +.|+.++..++
T Consensus 666 l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~~g~~~~~~~~ 715 (718)
T PLN03073 666 LIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 (718)
T ss_pred HHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHHHH
Confidence 98888764 24 899999875 5788899999999999998 78887765443
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=257.55 Aligned_cols=209 Identities=22% Similarity=0.369 Sum_probs=186.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc--ccc-CeEEEEcCCCC--CCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ--LFQ-TTCGYVNHRTD--LIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~--~~~-~~i~yv~q~~~--~~~~ 113 (606)
...+++.|||++++|+-+||+|.||||||||.|+|+|..+ |++|+|++||+++.-. .+| +.|-+++||++ +.|.
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR 103 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence 3568999999999999999999999999999999999998 8999999999987532 233 56889999975 7899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.+.+-|....++. .........+++.+.|+.+|| .+.+|-+++.||-||||||++||||+.+|++++.||...+||
T Consensus 104 l~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD 181 (267)
T COG4167 104 LRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181 (267)
T ss_pred hhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhcc
Confidence 99999999887753 456677788899999999998 457888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
...+-++.+++.++.++.|.+-|.++.|. .-+.++.|+|+||++|++|+.|.+.++..
T Consensus 182 ~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viVM~EG~vvE~G~t~~v~a 239 (267)
T COG4167 182 MSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLVMHEGEVVERGSTADVLA 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEEEecCceeecCChhhhhc
Confidence 99999999999999999999999887664 57889999999999999999999998753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=315.71 Aligned_cols=198 Identities=21% Similarity=0.336 Sum_probs=156.5
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
++.+.+|+|+||+|++||+++|+||||||||||||+|+|..+ +++|+|.++|. ..++|++|+.... ..|+
T Consensus 11 ~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~-pd~G~I~~~~~--------~~i~~~~q~~~~~-~~~~ 80 (638)
T PRK10636 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS-ADGGSYTFPGN--------WQLAWVNQETPAL-PQPA 80 (638)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEecCC--------CEEEEEecCCCCC-CCCH
Confidence 344679999999999999999999999999999999999887 78999999874 1378888864333 2455
Q ss_pred HHHHHHHH-----------------------HccC-CCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHH
Q psy10223 117 EQTLYYAA-----------------------HLSI-GPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVI 171 (606)
Q Consensus 117 ~e~l~f~~-----------------------~~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsI 171 (606)
.+.+.-.. .+.. .......+...+++++++.+|+. +..++++..|||||||||+|
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 54432110 0000 00000112345788999999997 57899999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHH
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLM 249 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~ 249 (606)
|++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+++|+. ..+.++||++++|++|+++ |.|+.+..
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCCH-HHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999999999999998764 46899988864 5788999999999999986 66776544
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=293.45 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=173.1
Q ss_pred eeeee-eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEE
Q psy10223 29 CFQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYV 104 (606)
Q Consensus 29 ~~~~~-~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv 104 (606)
.|+++ |+....+++|+||||++.||+.+|++||||+||||++|+|....+ ..+|.|.+||+++.. ..+|+.||.|
T Consensus 539 ~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI~iDgqdIrnvt~~SLRs~IGVV 617 (790)
T KOG0056|consen 539 EFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSITIDGQDIRNVTQSSLRSSIGVV 617 (790)
T ss_pred EEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh-ccCceEEEcCchHHHHHHHHHHHhcCcc
Confidence 34443 455567899999999999999999999999999999999998876 678999999999864 4578999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHH--HHH-HHcCCchhhcccCC----CCCHHHHHHHHHHHHHhh
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR--QVL-ADLALSNVARRNIS----ELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~ 177 (606)
|||..+|.+ |+..|++++-. ..+.++..+.++ ++= +.++..+-.+++++ .|||||||||+|||++++
T Consensus 618 PQDtvLFNd-TI~yNIryak~-----~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 618 PQDTVLFND-TILYNIRYAKP-----SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILK 691 (790)
T ss_pred cCcceeecc-eeeeheeecCC-----CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhc
Confidence 999999976 89999988632 223333222222 222 33566666667664 599999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|.+++|||.||+||..+.+.+...|.+++. ++|.|++.|..+ ..-.+|.++++++|++++.|.-+|++.
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS--TivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS--TIVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh--heecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999999985 567777778643 455699999999999999999998865
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=311.64 Aligned_cols=196 Identities=24% Similarity=0.345 Sum_probs=153.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+.+|+|+||++++||+++|+||||||||||||+|+|..+ +++|+|.++|.. .++|++|.+......+|.+
T Consensus 15 ~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~-p~~G~I~~~~~~--------~~~~l~q~~~~~~~~~v~~ 85 (635)
T PRK11147 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-LDDGRIIYEQDL--------IVARLQQDPPRNVEGTVYD 85 (635)
T ss_pred CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC-CCCeEEEeCCCC--------EEEEeccCCCCCCCCCHHH
Confidence 3579999999999999999999999999999999999987 788999997631 2566766543333345655
Q ss_pred HHHHH------------------------------HHccC-CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHH
Q psy10223 119 TLYYA------------------------------AHLSI-GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR 167 (606)
Q Consensus 119 ~l~f~------------------------------~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerq 167 (606)
++..+ ..+.. .......+...+++++++.+|+. .++++++|||||||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSgGekq 163 (635)
T PRK11147 86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSGGWLR 163 (635)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCHHHHH
Confidence 43211 00000 00000112345788999999997 38899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecCh
Q psy10223 168 RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPT 246 (606)
Q Consensus 168 RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~ 246 (606)
||+||++|+.+|+||||||||+|||+.++..+.+.|+++ +.|||+++|+. ..+.++||+|++|++|+++ +.|+.
T Consensus 164 Rv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~ 238 (635)
T PRK11147 164 KAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNY 238 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCH
Confidence 999999999999999999999999999999999999876 24888888864 5788999999999999997 56877
Q ss_pred hHHH
Q psy10223 247 RLML 250 (606)
Q Consensus 247 ~~~~ 250 (606)
++..
T Consensus 239 ~~~~ 242 (635)
T PRK11147 239 DQYL 242 (635)
T ss_pred HHHH
Confidence 6543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=309.84 Aligned_cols=182 Identities=24% Similarity=0.329 Sum_probs=155.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-----------ECCEeCCcc-----cccCeEEE
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----------LDGTPMSPQ-----LFQTTCGY 103 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-----------~~G~~~~~~-----~~~~~i~y 103 (606)
..+|++++ .+++||+++|+||||||||||||+|+|..+ |.+|+|. ++|.++... ..+..+++
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~-p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI-PNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 46999999 999999999999999999999999999987 7889997 899876421 11234666
Q ss_pred EcCCCCCCCCC---CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 104 VNHRTDLIPSL---TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 104 v~q~~~~~~~l---TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
.+|.....|.+ ||+|++... +..++++++++.++|.+..++.+++|||||||||+||++|+.+|+
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 66655444433 999988631 123568899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
+++|||||++||+.++..+.+.|+++++ |+|+|+++|+. +.+..++|+|++|++|
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~-~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDL-AVLDYLADNVHIAYGE 287 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999975 88999999975 5788999999999874
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=313.07 Aligned_cols=181 Identities=17% Similarity=0.288 Sum_probs=150.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+++ ++.++|++|++.+++. |++|
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~-~~~G~i~~~~--------~~~i~~v~Q~~~l~~~-tv~e 533 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP-VYGGRLTKPA--------KGKLFYVPQRPYMTLG-TLRD 533 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCeEeecC--------CCcEEEECCCCCCCCc-CHHH
Confidence 3579999999999999999999999999999999999987 7789998753 4679999999988887 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc---------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN---------ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
|+.++....... .....++++.++++.+++.+..+++ .+.||||||||++|||||+++|++++|||||+
T Consensus 534 ni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 534 QIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 998754211000 0001234577889999998766553 36899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|||+.+...+.+.+++ .|+|+|+++|++. ..+.+|++++|+.
T Consensus 612 ~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 9999999999998865 3789999999864 4688999999963
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=255.20 Aligned_cols=144 Identities=34% Similarity=0.560 Sum_probs=130.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q--------- 80 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQ--------- 80 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEee---------
Confidence 3479999999999999999999999999999999999987 788999999987643 234567899888
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
|||||+||++||++++.+|+++++||||+|||..+
T Consensus 81 ---------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~ 115 (157)
T cd00267 81 ---------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS 115 (157)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+..+.+.|+++.+. ++|+++++|++ +++...||+++++++|+
T Consensus 116 ~~~l~~~l~~~~~~-~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 116 RERLLELLRELAEE-GRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 99999999998764 78999999975 57788899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=327.19 Aligned_cols=188 Identities=19% Similarity=0.343 Sum_probs=155.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||.++|+||+|||||||+++|.|..+ +.+|.+. ..++.++||+|++.+++. |++|
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i~---------~~~~~Iayv~Q~p~Lf~g-TIre 697 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSSV---------VIRGSVAYVPQVSWIFNA-TVRE 697 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCEE---------EecCcEEEEcCccccccc-cHHH
Confidence 3579999999999999999999999999999999999987 6777652 357789999999999975 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------cccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v----~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
||.|+.. .++ ++.+++++..+|.+.. ++.+ ..||||||||++||||+.++|+|++||||
T Consensus 698 NI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 698 NILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred HhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9998642 222 3455566655554322 2333 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 188 TVNLDPLSTYLIVSM-LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 188 TsgLD~~~~~~i~~~-L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|++||+.++.++++. ++... .++|+|+++|++ ...+.+|+|++|++|++++.|+.+++.+
T Consensus 768 tSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~--~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 768 LSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQL--HFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred ccccCHHHHHHHHHHHhhhhh--cCCEEEEEECCh--hhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999988765 55442 478999999986 3578899999999999999999988764
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=247.42 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=165.2
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe---CC-----cc----cccCeEEEEc
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MS-----PQ----LFQTTCGYVN 105 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~---~~-----~~----~~~~~i~yv~ 105 (606)
+...-.+||||++.|||+++|+|.|||||||||++|++++. |+.|+|.|.-.+ .+ +. ..|...|+|.
T Consensus 17 g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~-p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~Vh 95 (258)
T COG4107 17 GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT-PDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVH 95 (258)
T ss_pred CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC-CCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceee
Confidence 34567899999999999999999999999999999999998 789999996432 21 11 1456789999
Q ss_pred CCCC--CCCCC----CHHHHHHH-HHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 106 HRTD--LIPSL----TVEQTLYY-AAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 106 q~~~--~~~~l----TV~e~l~f-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
|++. +-... .+.|-+.- +++ .-...++...++|+++.+.. ..|..++..|||+|||+.|||-|++
T Consensus 96 QnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt 168 (258)
T COG4107 96 QNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVT 168 (258)
T ss_pred cCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhcc
Confidence 9864 32222 23333321 111 11134566788999998864 4578899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.|+++++||||-|||.+.+..++++++.+.++.+.++++++|+. .-+--++||.++|++|++++.|-++.+++
T Consensus 169 ~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~VarLla~rlmvmk~g~vve~GLTDrvLD 241 (258)
T COG4107 169 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLADRLMVMKQGQVVESGLTDRVLD 241 (258)
T ss_pred CCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-HHHHHhhhcceeecCCCEecccccccccc
Confidence 99999999999999999999999999999999999999999864 45566789999999999999999887754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=324.84 Aligned_cols=187 Identities=17% Similarity=0.304 Sum_probs=156.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe-eEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR-GEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~-G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.+++|+|+|+++++||.++|+||+|||||||+++|.|..+ +.+ |+|.+ ++.++||+|++.+++. |++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~GG~I~l----------~~~Iayv~Q~p~Lfng-TIr 696 (1622)
T PLN03130 629 ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP-PRSDASVVI----------RGTVAYVPQVSWIFNA-TVR 696 (1622)
T ss_pred CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc-cCCCceEEE----------cCeEEEEcCccccCCC-CHH
Confidence 3579999999999999999999999999999999999988 788 89863 5679999999999875 999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-------ccc----CCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-------RRN----ISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~----v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
|||.|+.. .+ +++.+++++..+|.+.. ++. ...|||||||||+||||+.++|+|++|||
T Consensus 697 eNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 697 DNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred HHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 99998642 12 24456666666654322 233 34699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 187 PTVNLDPLSTYLIVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 187 PTsgLD~~~~~~i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||++||+.++.++.+ .++.+. .++|+|+++|++ ...+.+|+|++|++|+++..|+.+++.+
T Consensus 767 ptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred CccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 999999999998865 566553 478999999986 4678899999999999999999988763
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-31 Score=323.47 Aligned_cols=190 Identities=24% Similarity=0.361 Sum_probs=155.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~-~~~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE-PSEGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 569999999999999999999999999999999999988 7899999987 49999999999885 99999
Q ss_pred HHHHHHccCCCCCCHHHHHH-----HHHHHHHHcC--CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNA-----RIRQVLADLA--LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~-----~v~~~l~~lg--L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.|+... .....++ ..++.++.+. .....+.+...|||||||||+||||++.+|++++|||||+|||
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD 580 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence 9987421 1111111 1122222221 1112344577999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSM-LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~-L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.++.+. ++.+. .++|+|+++|++. . .+.||+|++|++|+++..|+.+++.+
T Consensus 581 ~~~~~~i~~~~l~~~~--~~~tvilvtH~~~-~-~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 581 VVTEKEIFESCLCKLM--SNKTRILVTSKLE-H-LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEEeCChH-H-HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999985 66664 3799999999874 3 45699999999999999999988753
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=321.94 Aligned_cols=192 Identities=21% Similarity=0.312 Sum_probs=157.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++ +.++|++|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~-~~~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE-ISEGRVWAE----------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEEC----------CeEEEEeCCCccCC-CcHHH
Confidence 4679999999999999999999999999999999999987 788999752 46999999998774 69999
Q ss_pred HHHHHHHccCCCCCCHHHH-----HHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVR-----NARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
|+.|... ...+.. ...+++.++.+ |+....+++...|||||||||+|||||+.+|++++|||||++|
T Consensus 740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 740 NILFFDE------EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHcCCh------hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 9988532 111111 11234445555 6766677889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+.++..+++.+..... .|+|+|+++|++. ..+.+|+|++|++|++++.|+.+++.+
T Consensus 814 D~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~--~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 814 DAHVGERVVEECFLGAL-AGKTRVLATHQVH--VVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred CHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999998875432222 4789999999863 457899999999999999999988753
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=322.05 Aligned_cols=191 Identities=18% Similarity=0.315 Sum_probs=155.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++| .++|++|++.+++ .||+||
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~-~~~G~i~~~g----------~i~yv~Q~~~l~~-~Ti~eN 718 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKG----------SVAYVPQQAWIQN-DSLREN 718 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-cCCcEEEECC----------EEEEEcCCccccC-CcHHHH
Confidence 569999999999999999999999999999999999987 7889999986 4999999998764 699999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHH---HHHHcCC-----chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQ---VLADLAL-----SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~---~l~~lgL-----~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+.|+.. ..++..+ ++.+ +.+.++. ....+++...||||||||++||||+..+|++++|||||++|
T Consensus 719 I~~g~~------~~~~~~~-~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saL 791 (1522)
T TIGR00957 719 ILFGKA------LNEKYYQ-QVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAV 791 (1522)
T ss_pred hhcCCc------cCHHHHH-HHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence 998632 1222111 1211 1223322 22334567889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-HhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYA-KRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~-~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+.++..+.+.+.+.. ...++|+|+++|++. ..+.+|+|++|++|+++..|+.+++.+
T Consensus 792 D~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~--~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 792 DAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred CHHHHHHHHHHHhhhhhhhcCCEEEEEeCChh--hhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 9999999999997532 124789999999874 345699999999999999999988763
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=258.47 Aligned_cols=191 Identities=21% Similarity=0.303 Sum_probs=136.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHH-HHHHcCCCCCCeeEEEEC-----------C-E-eCCccccc-CeEEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALL-EVISRRSSGTTRGEIILD-----------G-T-PMSPQLFQ-TTCGY 103 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLL-k~L~g~~~~~~~G~I~~~-----------G-~-~~~~~~~~-~~i~y 103 (606)
+.++|+|+|+++++||+++|+||||||||||+ ..|.. .|++.+. | . .......+ ....+
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 35799999999999999999999999999996 44431 1111110 0 0 00001111 12333
Q ss_pred EcCCC--CCCCCCCHHH---HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 104 VNHRT--DLIPSLTVEQ---TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 104 v~q~~--~~~~~lTV~e---~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
..|++ ...|..+|.. ...+...+. ......++ .+.++.+++.+ ..++++++|||||||||+||++|+.
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 33333 2345556553 222221110 11112233 56899999987 5899999999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEec
Q psy10223 178 DP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAG 244 (606)
Q Consensus 178 ~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G 244 (606)
+| +++++||||+|||+.++..+.+.|+++++ .|.|+|+++|++. .+ +.||++++| ++|+++++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 98 59999999999999999999999999875 5889999999864 44 699999999 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=285.77 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=164.3
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
.++.+.+++|+|+.+.+|+.+||+|+||||||||||+|+|... +++|+|...+ ..+++|++|+....+..|
T Consensus 12 ~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~-~~~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 12 AYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE-PDSGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred eeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc-CCCCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3456789999999999999999999999999999999999987 7889997642 136999999999999999
Q ss_pred HHHHHHHHHHcc-------------CCCC--------------CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH
Q psy10223 116 VEQTLYYAAHLS-------------IGPQ--------------VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR 168 (606)
Q Consensus 116 V~e~l~f~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR 168 (606)
|.+.+.-+..-. .+.. ....+.+.++..++..+|+.+. ++++++||||||+|
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~R 161 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRR 161 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHH
Confidence 999886543210 0000 0001123567788888999887 99999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChh
Q psy10223 169 VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTR 247 (606)
Q Consensus 169 vsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~ 247 (606)
|+||++|+.+|++|+|||||++||..+...+-+.|++. .| |+|+++|+ +..+-+.|++|+-|+.|++. |.|+-+
T Consensus 162 v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 162 VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVSHD-RYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEeCC-HHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999864 45 88888884 78899999999999999864 557655
Q ss_pred HH
Q psy10223 248 LM 249 (606)
Q Consensus 248 ~~ 249 (606)
..
T Consensus 237 ~~ 238 (530)
T COG0488 237 SY 238 (530)
T ss_pred HH
Confidence 43
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-31 Score=300.55 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=146.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECCEeC-----Cc------------ccccC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDGTPM-----SP------------QLFQT 99 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G~~~-----~~------------~~~~~ 99 (606)
.+.+|+|+|++|++||.++|+||||||||||||+|+|+.. -+..|+|.+.++.. +. ...++
T Consensus 189 ~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~ 268 (718)
T PLN03073 189 GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEE 268 (718)
T ss_pred CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHH
Confidence 4569999999999999999999999999999999999641 14567776644321 10 00112
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHccCCC---------------CCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCH
Q psy10223 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP---------------QVSRYVRNARIRQVLADLALS-NVARRNISELTP 163 (606)
Q Consensus 100 ~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~---------------~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSg 163 (606)
.+++++|++.+... ++.++.........+. .......+.++.++|..+|+. +..++++++|||
T Consensus 269 ~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSg 347 (718)
T PLN03073 269 EAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSG 347 (718)
T ss_pred HHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCH
Confidence 24444443322110 1111100000000000 000112345677888889986 567889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-E
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-Y 242 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~ 242 (606)
||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++ +.|+|+++|+ .+.+.++||++++|++|+++ |
T Consensus 348 G~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~~tviivsHd-~~~l~~~~d~i~~l~~g~i~~~ 422 (718)
T PLN03073 348 GWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW----PKTFIVVSHA-REFLNTVVTDILHLHGQKLVTY 422 (718)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc----CCEEEEEECC-HHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999875 5789999987 46788999999999999996 6
Q ss_pred ecChhHH
Q psy10223 243 AGPTRLM 249 (606)
Q Consensus 243 ~G~~~~~ 249 (606)
.|+.++.
T Consensus 423 ~g~~~~~ 429 (718)
T PLN03073 423 KGDYDTF 429 (718)
T ss_pred CCCHHHH
Confidence 7776654
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=241.99 Aligned_cols=130 Identities=39% Similarity=0.711 Sum_probs=118.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+||+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP-PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH-ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999987 689999999999865 3467889999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccC----CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI----SELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v----~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
...++++++++.+++.+..++.+ +.||+||||||+||+||+.+|++++|||||+
T Consensus 80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456888999999888777777 9999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=274.96 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=167.9
Q ss_pred eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCC
Q psy10223 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 34 ~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~ 110 (606)
|...+.+++|+++|+.+++|+.++++||+|+||||++++|-..+. ..+|.|.++|+++.. ...|+.||.||||..+
T Consensus 270 F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD-~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL 348 (497)
T COG5265 270 FAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD-VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL 348 (497)
T ss_pred eeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC-CcCceEEEcchhHHHhHHHHHHHHhCcCccccee
Confidence 445567899999999999999999999999999999999999988 688999999998753 4578899999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHcCCchhhcccCC----CCCHHHHHHHHHHHHHhhCCCE
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADLALSNVARRNIS----ELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~v~----~LSgGerqRvsIa~aL~~~p~l 181 (606)
|.. |...|+.++-. ..+.++....+ .+.++ .+.+-.++.|+ .|||||||||+|||+++++|++
T Consensus 349 FND-ti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 349 FND-TIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred hhh-hHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhhhcccchheeeccCchHHHHHHHHHHhcCCCE
Confidence 865 88888887632 23333332221 12222 23444556664 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+++||.||+||..+..++...|++.+ .|+|.+++.|..+ ..--+|+++||++|++++.|.-++++.
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrls--ti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLS--TIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhh--hccCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999987 4778887778653 344599999999999999999998875
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=252.72 Aligned_cols=195 Identities=24% Similarity=0.332 Sum_probs=153.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-----cCCCC----C-----------CeeEEEECCEeCCcc----
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-----RRSSG----T-----------TRGEIILDGTPMSPQ---- 95 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-----g~~~~----~-----------~~G~I~~~G~~~~~~---- 95 (606)
..-|+|||..++.|++++|.|+||||||||++.+. ..... + ..--|.++..++...
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 34699999999999999999999999999998552 11000 1 111356666555310
Q ss_pred ---------cccC----------------eEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC
Q psy10223 96 ---------LFQT----------------TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150 (606)
Q Consensus 96 ---------~~~~----------------~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL 150 (606)
..|+ .+.|..++...+..+||.|++.|..... ..+++.++|+.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 0111 2456666666678999999999876531 12456789999999
Q ss_pred ch-hhcccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHH
Q psy10223 151 SN-VARRNISELTPSEHRRVVIGTQLVKD---PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVL 226 (606)
Q Consensus 151 ~~-~~~~~v~~LSgGerqRvsIa~aL~~~---p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~ 226 (606)
.+ ..+++++.||||||||++||++|+.+ |++++|||||+|||+..+..+.+.|+++.+ .|.|+|+++|++. . .
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~-~-i 235 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLD-V-I 235 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-H-H
Confidence 87 58999999999999999999999996 799999999999999999999999999975 4889999999863 3 4
Q ss_pred hcCCeEEEE------cCCeEEEecCh
Q psy10223 227 PFLDRTAYL------CLGDLIYAGPT 246 (606)
Q Consensus 227 ~~~D~v~vL------~~G~~v~~G~~ 246 (606)
+.+|+++.| ++|++++.|++
T Consensus 236 ~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 236 KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 679999999 89999999874
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=265.86 Aligned_cols=202 Identities=23% Similarity=0.405 Sum_probs=173.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCC---CCCCCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHR---TDLIPSL 114 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~---~~~~~~l 114 (606)
-++|+||++++||+++|-|--|||+|-|+++|.|..+ ..+|+|.++|+++.. ...+..++||++| +-+++.+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~-~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~ 352 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP-ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM 352 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc-CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence 5899999999999999999999999999999999766 678999999998753 2356789999998 4589999
Q ss_pred CHHHHHHHHHHccCCC--CCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 115 TVEQTLYYAAHLSIGP--QVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+|.+|+.++...+... .+++...++.+++..+.+++. +..+..++.||||.||||.||+.|..+|++|||||||+|.
T Consensus 353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 9999999883222111 255555667788999999985 4567889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
|.-++.++.++|++++++ |++||+++.. .+|+..+||||+||++|+++..-+.
T Consensus 433 DVGAK~eIy~li~~lA~~-G~ail~iSSE-lpEll~~~DRIlVm~~Gri~~e~~~ 485 (500)
T COG1129 433 DVGAKAEIYRLIRELAAE-GKAILMISSE-LPELLGLSDRILVMREGRIVGELDR 485 (500)
T ss_pred ccchHHHHHHHHHHHHHC-CCEEEEEeCC-hHHHHhhCCEEEEEECCEEEEEecc
Confidence 999999999999999975 8888887664 5689999999999999999875443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=241.82 Aligned_cols=165 Identities=15% Similarity=0.268 Sum_probs=133.5
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC--------CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG--------TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+++++++++| +++|+|||||||||||++|+|+..+ ...|++.++|.+......++.+++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999987631 22357888887654333457899999998765
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNL 191 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgL 191 (606)
|... ..++++++++. .+..++.++.||||||||++||++++ .+|+++++||||+||
T Consensus 89 ------~~~~-----------~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 ------YSII-----------SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred ------eeEE-----------ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 1110 12356677766 55678899999999999999999997 467999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+..+..+.+.|+++++ +.|+|+++|++. ..+.+|+++.+..
T Consensus 149 D~~~~~~l~~~l~~~~~--~~tiIiitH~~~--~~~~~d~v~~~~~ 190 (197)
T cd03278 149 DDANVERFARLLKEFSK--ETQFIVITHRKG--TMEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHhhcceEEEEEe
Confidence 99999999999999864 578999999863 4578999999975
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-28 Score=284.20 Aligned_cols=188 Identities=23% Similarity=0.381 Sum_probs=159.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
..+.|+|||++|++|+++||+||-|||||+||.+|.|..+ ..+|+|.++|. ++|++|++.++.. ||+|
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG~v~v~gs----------iaYv~Q~pWI~ng-Tvre 600 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSGSVAVNGS----------VAYVPQQPWIQNG-TVRE 600 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccceEEEcCe----------EEEeccccHhhCC-cHHH
Confidence 4458999999999999999999999999999999999998 78899998874 8999999998865 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-----------cCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-----------NISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
|+.|+.. .. +++-+++++...|++..+. +.-.||||||||+++|||+-+++++++||.|
T Consensus 601 NILFG~~------~d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDp 670 (1381)
T KOG0054|consen 601 NILFGSP------YD----EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDP 670 (1381)
T ss_pred hhhcCcc------cc----HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCc
Confidence 9999753 22 3455566666666543322 2347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.|++|+.+..++.+..-+.. -.++|+|+++||- +..+.+|.|++|++|++...|+.+|+++
T Consensus 671 lSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql--~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 671 LSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQL--QFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred chhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCch--hhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 99999999999887665433 3579999999973 6889999999999999999999999984
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-28 Score=227.10 Aligned_cols=193 Identities=25% Similarity=0.367 Sum_probs=160.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe--CC-----cc----cccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP--MS-----PQ----LFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~--~~-----~~----~~~~~i~yv~q~ 107 (606)
..++|+|+|++++.||++++=||||||||||||+|-+.+. +++|+|++.-.. ++ +. ..|+.+|||.|-
T Consensus 23 ~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~-~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF 101 (235)
T COG4778 23 RLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL-PDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF 101 (235)
T ss_pred EeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC-CCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence 3579999999999999999999999999999999999887 789999985322 21 11 235679999999
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
-...|..+..|.+.-.+.. .+++.+..+.++.+++.++.+.+ ..+-.+...||||||||.|||.++.+=+||+|||
T Consensus 102 LRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDE 178 (235)
T COG4778 102 LRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDE 178 (235)
T ss_pred HHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecC
Confidence 8888988888777666542 35677778889999999999965 5566789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
||+.||..++.-+++++++.. ..|..++=+-|+ .+--...+||++-+..
T Consensus 179 PTasLDa~Nr~vVveli~e~K-a~GaAlvGIFHD-eevre~vadR~~~~~~ 227 (235)
T COG4778 179 PTASLDATNRAVVVELIREAK-ARGAALVGIFHD-EEVREAVADRLLDVSA 227 (235)
T ss_pred CcccccccchHHHHHHHHHHH-hcCceEEEeecc-HHHHHHHhhheeeccc
Confidence 999999999999999999864 467777777664 3344568899887653
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=289.00 Aligned_cols=197 Identities=24% Similarity=0.389 Sum_probs=165.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
...+|||||++|+|||-+||+|+.|||||||.++|-++.. +.+|+|.+||.++.. ..+|++++.+||||.+|.. |
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e-~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-T 1229 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE-PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-T 1229 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC-ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-c
Confidence 4579999999999999999999999999999999999887 688999999999875 4689999999999999987 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
||.||+=.. ..++ +++-++|++.+|.+. +|..+ ..+|-||||-+++||||+++++||+|
T Consensus 1230 vR~NLDPf~------e~sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1230 VRFNLDPFD------EYSD----DEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred cccccCccc------ccCH----HHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 999986321 1222 334445555544332 33333 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||.|++.|+.|-..+-+.||+.= .++|||.+.|.- ..+.+ +|||+||++|+++++|+|.++++
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl-~TVmd-~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEF--KDCTVLTIAHRL-NTVMD-SDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHh--cCCeEEEEeecc-chhhh-cCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999864 478999988864 35555 89999999999999999999875
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-28 Score=243.31 Aligned_cols=190 Identities=16% Similarity=0.230 Sum_probs=137.4
Q ss_pred eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC----------------CCCCee--------EEEECC
Q psy10223 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS----------------SGTTRG--------EIILDG 89 (606)
Q Consensus 34 ~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~----------------~~~~~G--------~I~~~G 89 (606)
|++++++.++++++ |++++|+|||||||||||++|++.+ . +.+| +|.+++
T Consensus 9 fksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~ 82 (243)
T cd03272 9 FKSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDN 82 (243)
T ss_pred ccCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEc
Confidence 44556677888887 7899999999999999999998431 1 1233 555555
Q ss_pred Ee----CC--cccccCeEEEEcCCCCCCC-CCCHHHHHHHHHHccCCCCCCHH-HHHHHHHHHHHHcCCchhhcccCCCC
Q psy10223 90 TP----MS--PQLFQTTCGYVNHRTDLIP-SLTVEQTLYYAAHLSIGPQVSRY-VRNARIRQVLADLALSNVARRNISEL 161 (606)
Q Consensus 90 ~~----~~--~~~~~~~i~yv~q~~~~~~-~lTV~e~l~f~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~v~~L 161 (606)
.+ +. +...++.+++++|+..+++ ..|..|...+............. .... ++.+.+++.+..+++++.|
T Consensus 83 ~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~~~~l 159 (243)
T cd03272 83 SDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQEMQQL 159 (243)
T ss_pred CCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhcccccccccccc
Confidence 32 11 1235667899988877776 46777766665543222110000 0011 2333355566678899999
Q ss_pred CHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 162 TPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 162 SgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
|||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++++|+++|. .++.++||++++|.
T Consensus 160 S~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~--~~~~~~~d~i~~l~ 234 (243)
T cd03272 160 SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFR--PELLEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecC--HHHHhhCCEEEEEE
Confidence 9999999999999974 5899999999999999999999999999854 6788877775 36889999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-27 Score=258.23 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=158.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV~ 117 (606)
++.+++++|+.+++|+.++|+||||+|||||||+|+|... +.+|+|.+.- .-++||..|+. .+.+..|+.
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~--------~v~igyf~Q~~~~l~~~~t~~ 404 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGE--------TVKIGYFDQHRDELDPDKTVL 404 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCC--------ceEEEEEEehhhhcCccCcHH
Confidence 3689999999999999999999999999999999999887 6689998742 13589999986 455888999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
|.+.-... .. .+..++..|..++++. ...++++.||||||.||.+|+.++.+|.+|+|||||+.||..+.
T Consensus 405 d~l~~~~~-----~~----~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 405 EELSEGFP-----DG----DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred HHHHhhCc-----cc----cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 98864331 11 1567899999999964 55789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe-cChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA-GPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~-G~~~~~~~ 251 (606)
..+.+.|... ..|+|+++|+ +..+-..+++++.+.+ ++..+ |.-++-.+
T Consensus 476 ~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 476 EALEEALLDF----EGTVLLVSHD-RYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred HHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 9999999865 4578888886 5689999999999998 55444 77655443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-28 Score=229.19 Aligned_cols=197 Identities=26% Similarity=0.375 Sum_probs=171.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
-|-.+|+++..||++-++|||||||||||-.++|+.+ -+|+|.++|.++.. .++.+.-+|..|+..-...+.|.+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~--~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCC--CCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 3778999999999999999999999999999999985 57999999999854 235566789988877666788988
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~-------~p~llllDEPTsgL 191 (606)
.|... .+.++....++++...++|++...+.+..|||||-|||-+|-..+. ..++|+||||.++|
T Consensus 92 YL~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~L 163 (248)
T COG4138 92 YLTLH--------QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSL 163 (248)
T ss_pred hhhhc--------CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcch
Confidence 87543 2335566778899999999999999999999999999999987664 34699999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|.+....+-++|.++++ .|.+||++.|+ .....+.+|++++|+.|+++..|.++|++
T Consensus 164 DvAQ~~aLdrll~~~c~-~G~~vims~HD-LNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 164 DVAQQSALDRLLSALCQ-QGLAIVMSSHD-LNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred hHHHHHHHHHHHHHHHh-CCcEEEEeccc-hhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999997 59999999886 45788999999999999999999999886
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-28 Score=241.03 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=136.8
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
+.++.+.+|+++++ ++++|+||||||||||+++|.-. .|.+.. ...++++++++|+..++|.+
T Consensus 12 k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~-----------~G~~~~-~~~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 12 KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV-----------FGFRAS-KMRQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH-----------hccCHH-HhhhhhHHHHhcCCCCCCCC
Confidence 35556789999987 89999999999999999999722 222221 11125688889988888999
Q ss_pred CHHHHHHHHHHccC-----CCCCCHHHHHH--HHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh----CCCEEE
Q psy10223 115 TVEQTLYYAAHLSI-----GPQVSRYVRNA--RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK----DPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~-----~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~----~p~lll 183 (606)
|+.|.+.+...... ..+........ ...++++.+++.+..+++++.||+|||||++||++++. +|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ili 154 (212)
T cd03274 75 DSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYV 154 (212)
T ss_pred ceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEE
Confidence 99887766543210 00111111000 12556677888888899999999999999999999974 579999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+||||+|||+.++..+.+.|+++++ +.++|+++|++ ++.+.||++++|+.
T Consensus 155 lDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 155 MDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999999999999999999853 45666666764 78899999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=238.16 Aligned_cols=207 Identities=25% Similarity=0.404 Sum_probs=177.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC----Ccc-cccCeEEEEcCCC---CCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM----SPQ-LFQTTCGYVNHRT---DLI 111 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~----~~~-~~~~~i~yv~q~~---~~~ 111 (606)
...++||||+|++||+++|.|-.|-|-+.|+.+|+|+.+ +.+|+|.++|+++ +.. ..+..++|||+|. -+.
T Consensus 271 ~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv 349 (501)
T COG3845 271 VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLV 349 (501)
T ss_pred CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccc
Confidence 467999999999999999999999999999999999987 5569999999996 222 2456799999986 478
Q ss_pred CCCCHHHHHHHHHHcc----CCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 112 PSLTVEQTLYYAAHLS----IGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~----~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+.+|+.||+.+...-+ ...-....+..+..++++++++.. .-.+.+++.||||.+||+-+||+|..+|++|+..+
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~q 429 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcC
Confidence 9999999998875431 111255667778889999999987 34566789999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+|||..++..+.+.|.+.++ .|+.|++++. ..+++++++||+.||++|+++...+++++
T Consensus 430 PTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~-dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 430 PTRGLDVGAIEFIHERLLELRD-AGKAVLLISE-DLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred CCccccHHHHHHHHHHHHHHHh-cCCEEEEEeh-hHHHHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999999976 5888888776 46899999999999999999988887763
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=236.79 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=138.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE-eCCc-----ccccCeEEEEcCCC---------CCCCCCCHH
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT-PMSP-----QLFQTTCGYVNHRT---------DLIPSLTVE 117 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~-~~~~-----~~~~~~i~yv~q~~---------~~~~~lTV~ 117 (606)
..+++|+|||||||||||++|++.+.+...|++...|. ++-. ...+..+.+++|++ .+.|.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 44999999999999999999999876333467877776 3211 11234788999985 356789999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--------------------hhhcccCCCCCHHHHHHHHHHHHHh-
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--------------------NVARRNISELTPSEHRRVVIGTQLV- 176 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~v~~LSgGerqRvsIa~aL~- 176 (606)
+++......+...+ .+....+++.++|+.+++. +..++++++||||||||++||++|+
T Consensus 105 r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence 88865432111000 1122346788999999986 4567889999999999999999998
Q ss_pred ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 177 ---KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 177 ---~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
.+|+++++||||+|||+.++..+.+.|++++ .|.++|+++|. .++.+.+|+++-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~--~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLK--EGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECC--HHHHHhCCEEEEEE
Confidence 5789999999999999999999999999985 37899999998 47888999998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-26 Score=224.48 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=126.5
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHH----cCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-----CCCCCCC
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVIS----RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-----DLIPSLT 115 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~----g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-----~~~~~lT 115 (606)
..++++.+| +++|+|||||||||||++|. |... +..|.+..+...+.....+..+++++|++ .....+|
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~-~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP-PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC-cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 344567778 99999999999999999995 7765 44555542222222223456789999887 3345567
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH------HHHHHHHhhCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR------VVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR------vsIa~aL~~~p~llllDEPTs 189 (606)
+.|++.+.. . .++++.+ ++.++.||+||||| ++||++++.+|+++++||||+
T Consensus 93 ~~~~~~~~~---------~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 93 ILENVIFCH---------Q----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred Hhhceeeec---------h----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 888775421 1 1223333 77899999999996 789999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 190 NLDPLSTY-LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 190 gLD~~~~~-~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+||+.++. .+.+.|++++++.+.++|+++|++ +..+.+|+++.|.+
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~--~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDE--ELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH--HHHhhCCEEEEEee
Confidence 99999999 999999999765478999999985 35578999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=222.61 Aligned_cols=180 Identities=16% Similarity=0.114 Sum_probs=129.6
Q ss_pred EeeEEEEe-CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC--EeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 44 KDISLEVR-PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG--TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 44 ~~vs~~v~-~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G--~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
++++|... +|++++|+|||||||||||++|++.+.++..+....+. ..+.....+..+++++|++.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 45666543 58999999999999999999999654333334443321 11111223456888888764311 111110
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCC
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK----------DPVLLLLDEPTVN 190 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~----------~p~llllDEPTsg 190 (606)
..+..+..+.+ .+...++.+..+++++.||||||||++||++|+. +|+++++||||+|
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~ 163 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGT 163 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCccc
Confidence 22332222111 2444556778899999999999999999999985 5789999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
||+.++..+.+.|+++++ .+.|+|+++|++ +.+...+|+++++++|.
T Consensus 164 lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 164 LDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRLEVIKTPG 210 (213)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEEEEEecCC
Confidence 999999999999999975 488999999976 57888999999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=260.60 Aligned_cols=138 Identities=21% Similarity=0.251 Sum_probs=114.4
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHh---hCCCEEEEe
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLV---KDPVLLLLD 185 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~---~~p~llllD 185 (606)
.+...||.|+|.+...-........++..+++ ++|+.+||.+. .++.+.+|||||||||+||++|+ .+|++++||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 56678999999887652211112233444556 58899999986 79999999999999999999998 699999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc------CCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC------LGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~------~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+++.|+++++ .|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 838 EPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 838 EPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999976 4889999999863 45 8999999996 789999999988753
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=249.29 Aligned_cols=127 Identities=24% Similarity=0.312 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP---VLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p---~llllDEPT 188 (606)
.+||.|++.|...+. + ..+..+.|+.+||.. ..++++..||||||||+.||++|+.+| ++++|||||
T Consensus 791 ~ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPt 861 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 (943)
T ss_pred cCcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCC
Confidence 378999988876431 1 123467899999986 579999999999999999999999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++..+++.|+++.+ .|.|||+++|++. . .+.+|+|+.| ++|++++.|+++++.+
T Consensus 862 sGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~-~-i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 862 TGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLD-V-IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-H-HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999975 5889999999863 3 4689999999 7899999999988753
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-24 Score=221.32 Aligned_cols=186 Identities=22% Similarity=0.312 Sum_probs=155.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
.=+..||+++++||++-|+|.||||||||++.|.|+.+ |.+|+|.+||.+++.+ ++|+-++-|+.|-.+|+.+--
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~-PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~- 414 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG- 414 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC-CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC-
Confidence 34789999999999999999999999999999999998 8899999999999753 577777777777777765311
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch---hhcccC--CCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN---VARRNI--SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v--~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
+.+. ...+.++.+|+++.+.+ +.|... -.||.|||||+++..|++-+.+|+++||=-+.-|
T Consensus 415 -----------~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 415 -----------PEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred -----------CccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 1111 12345777888887754 333333 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
|.-++.+.+.+--+-++.|+||+.++|+. .-+..+||++.+++|++++.-
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999998888888999999999975 468999999999999998764
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-24 Score=203.35 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=166.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCC---CeeEEEECCEeC---Cccc----ccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPM---SPQL----FQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~---~~G~I~~~G~~~---~~~~----~~~~i~yv~q~~ 108 (606)
...+++++|+++..||+-+++|.||||||-..|+|+|..+.. +.-...+++.++ ++++ ..+.+++++|++
T Consensus 19 ~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP 98 (330)
T COG4170 19 WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCc
Confidence 456899999999999999999999999999999999986521 113345555553 2222 234678999997
Q ss_pred C--CCCCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHHcCCch---hhcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 109 D--LIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLADLALSN---VARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 109 ~--~~~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~---~~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
. +.|.-+|...|.-.......++... .-++.++-++|.++|+.+ ....++.+|.-||-|+|.||.|++.+|+
T Consensus 99 ~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPr 178 (330)
T COG4170 99 QSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred hhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCc
Confidence 5 6676666555433221111111100 013456788999999975 4567899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|+.||||+.+|+.++.++.++|.++.+..|.||++++|+ ...+-+.||++-||+-|+-++.++.+++++
T Consensus 179 LLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~D-l~~is~W~d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 179 LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD-LQMISQWADKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred eEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEccc-HHHHHHHhhheEEEEecccccccchhHHhc
Confidence 9999999999999999999999999998889999998886 568999999999999999999999998875
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=204.51 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=123.8
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC----cccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~----~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++++.+.+| +.+|+|||||||||||.+|.....+... ....|.... ...-...+...+|....+++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc--cccccccHHHHhhCCCCeEEEEEEEEcCCccCC-----
Confidence 46788888888 8899999999999999998743321110 001121111 01113456777776655441
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL----VKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL----~~~p~llllDEPTsgLD~~ 194 (606)
. .. ...+.+++++++. .+..+++++.||+|||||++||+++ +.+|+++++||||+|||+.
T Consensus 84 ------~------~~-~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ------P------LC-VLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ------c------CC-HHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 0 11 1123567777766 6778899999999999999999999 5899999999999999999
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 195 STYLIVSMLSSYAKR--KSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~--~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
++..+.+.|++++++ .+.++++++|+. +++.++ |+|.+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLASS-DDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcc-cccccc-cceeEEEecC
Confidence 999999999998654 345888888865 466664 9999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=227.96 Aligned_cols=177 Identities=25% Similarity=0.389 Sum_probs=145.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+..|++.|+.+++||.+.|.||||||||||+|+|+|+-+ .-+|+|.+- -...+-|+||.+.+... |.+|-
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP-~g~G~I~~P--------~~~~~lflpQ~PY~p~G-tLre~ 475 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP-WGSGRISMP--------ADSALLFLPQRPYLPQG-TLREA 475 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc-cCCCceecC--------CCCceEEecCCCCCCCc-cHHHH
Confidence 478999999999999999999999999999999999986 455776441 12358899999987766 99999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN------ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~------v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+.++... ... ..+.+.++|.++||.+..++. -+.||+||||||++||.|+++|++++|||.|++||+
T Consensus 476 l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 476 LCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 8875431 112 235688999999998876553 257999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
.+...+.+.|++.. .+.|+|-+.|.+ .+..+.++.+-+.+
T Consensus 549 ~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~~ 588 (604)
T COG4178 549 ETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeecc
Confidence 99999999998743 578999999976 46667777665543
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-23 Score=237.84 Aligned_cols=125 Identities=21% Similarity=0.278 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhh---CCCEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVK---DPVLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~---~p~llllDEPT 188 (606)
.+||.|.+.|...+. . ..+..++|+.+||.. ..++++++|||||+||+.||++|+. +|++++|||||
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPt 859 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPT 859 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCC
Confidence 367777777765421 1 123467889999986 4789999999999999999999997 59999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~ 249 (606)
+|||+..+..+.+.|+++.+ .|.|+|+++|++. .+ +.+|++++| ++|++++.|+++++
T Consensus 860 sgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 860 TGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999975 4889999999863 44 679999999 79999999998764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=215.26 Aligned_cols=174 Identities=22% Similarity=0.314 Sum_probs=141.5
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
|.-=.+++..||+++++||||-||||+.|+|+|.++ |++|+ .. .-+++|-||--.--...||++.|.-
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik-Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~ 424 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK-PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRS 424 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc-CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHH
Confidence 444456667789999999999999999999999998 78776 11 2347777886554567799998876
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
....+... ..-..++++-|.|++..++.+.+|||||.|||+||.+|..++++++||||++-||+..+..+.+.
T Consensus 425 ~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakv 497 (591)
T COG1245 425 AIRSAFGS-------SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKV 497 (591)
T ss_pred hhhhhccc-------chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHH
Confidence 65422111 12235788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
+|+.+...++|.+++-|+. .-+--+.||++|..
T Consensus 498 IRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 498 IRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 9999988889999987754 34555678888775
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-23 Score=219.56 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=137.3
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCccc---cc----------CeE
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQL---FQ----------TTC 101 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~~---~~----------~~i 101 (606)
...++.+++|+++++.+|+-++|+|+|||||||+|++|.|+..+ |..=.+..-.+.+.+.. .+ .++
T Consensus 84 s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rl 163 (614)
T KOG0927|consen 84 SFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRL 163 (614)
T ss_pred ccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHH
Confidence 44567899999999999999999999999999999999998763 11112222222221110 00 001
Q ss_pred EEEcCCCCCC-CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-chhhcccCCCCCHHHHHHHHHHHHHhhCC
Q psy10223 102 GYVNHRTDLI-PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARRNISELTPSEHRRVVIGTQLVKDP 179 (606)
Q Consensus 102 ~yv~q~~~~~-~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~LSgGerqRvsIa~aL~~~p 179 (606)
.|..++-... +. --.+.+.-.-. + ...+..+....++.++|..+|. ++..++.+.++|||+|+|+++||+|..+|
T Consensus 164 e~~~E~l~~~~d~-~~~~~l~~~~~-r-~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP 240 (614)
T KOG0927|consen 164 EYLAEDLAQACDD-KEKDELDELYE-R-LDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKP 240 (614)
T ss_pred HHHHHHHHhhccc-hhhhHHHHHHH-H-HHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCC
Confidence 0000000000 00 00000000000 0 0012222344556677777765 46788999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe-EEEecChhHHH
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD-LIYAGPTRLML 250 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~-~v~~G~~~~~~ 250 (606)
++|+|||||+|||..+...+-+.|.+..+ + ++++++| +.+.+-..|.+|+-|++++ +.|.|+-+...
T Consensus 241 ~LLLLDEPtnhLDleA~~wLee~L~k~d~--~-~lVi~sh-~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 241 DLLLLDEPTNHLDLEAIVWLEEYLAKYDR--I-ILVIVSH-SQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred CEEEecCCccCCCHHHHHHHHHHHHhccC--c-eEEEEec-chhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 99999999999999999999999987632 2 5666555 5568889999999999999 55667766543
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=217.59 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=149.3
Q ss_pred eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC--CCCC
Q psy10223 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR--TDLI 111 (606)
Q Consensus 34 ~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~--~~~~ 111 (606)
|+..++-.++++++|-++.++.++++||||+|||||||++.|.+. |..|.|.-.-+. .+++-.|+ +.+.
T Consensus 397 F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~--------~~~~y~Qh~~e~ld 467 (614)
T KOG0927|consen 397 FGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHN--------KLPRYNQHLAEQLD 467 (614)
T ss_pred cCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccc--------cchhhhhhhHhhcC
Confidence 444333479999999999999999999999999999999999998 778888643221 23333333 3344
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
-..++.|++.-... . ....+.++.+|.++||+ +..+.+++.||+|||+||..|+.++..|.+|+|||||+|
T Consensus 468 l~~s~le~~~~~~~----~----~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnh 539 (614)
T KOG0927|consen 468 LDKSSLEFMMPKFP----D----EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNH 539 (614)
T ss_pred cchhHHHHHHHhcc----c----cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcC
Confidence 55677777653321 1 12346688999999998 566778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE-EEecChhH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL-IYAGPTRL 248 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~-v~~G~~~~ 248 (606)
||..+...+.+.|.++ ..++|+++|+- --|-+.++++.+..+|.+ .+.|....
T Consensus 540 LDi~tid~laeaiNe~----~Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 540 LDIETIDALAEAINEF----PGGVVLVSHDF-RLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred CCchhHHHHHHHHhcc----CCceeeeechh-hHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999775 23566667754 468888999999988764 55566443
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=205.86 Aligned_cols=173 Identities=15% Similarity=0.147 Sum_probs=116.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe--CCc--------ccccCeEEEEcCCCCC-CCCCCHHHHHHHH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP--MSP--------QLFQTTCGYVNHRTDL-IPSLTVEQTLYYA 123 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~--~~~--------~~~~~~i~yv~q~~~~-~~~lTV~e~l~f~ 123 (606)
+++|+|||||||||||++|++... +..|++..++.. +.. ....-.+.|..|++.. .-.-++.+....
T Consensus 24 ~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~- 101 (247)
T cd03275 24 FTCIIGPNGSGKSNLMDAISFVLG-EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSS- 101 (247)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceE-
Confidence 999999999999999999998775 334555443311 000 0111234444443321 001111111000
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchh----------------------hcccCCCCCHHHHHHHHHHHHHhhC---
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNV----------------------ARRNISELTPSEHRRVVIGTQLVKD--- 178 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~----------------------~~~~v~~LSgGerqRvsIa~aL~~~--- 178 (606)
.... ....+ .+.++++++.+|+... .++++..||+|||||++||++++.+
T Consensus 102 ~~in-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~ 176 (247)
T cd03275 102 YRIN-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQ 176 (247)
T ss_pred EEEC-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccC
Confidence 0000 11122 2345678888888421 2344589999999999999999875
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 179 -PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 179 -p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+++++||||+|||+.++..+.+.|+++++ .|.++|+++|++ ++.+.+|++++|.+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 899999999999999999999999999975 488999999973 57789999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-20 Score=175.92 Aligned_cols=215 Identities=20% Similarity=0.308 Sum_probs=158.5
Q ss_pred CccEEEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE
Q psy10223 9 EEEYYLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87 (606)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~ 87 (606)
..+..+++ |+++...+ ..+++-|+|++++.|...+++|.||||||||||+|+|..- .-.|.|.+
T Consensus 9 ~~~~aievsgl~f~y~~--------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm-v~~~~v~V 73 (291)
T KOG2355|consen 9 VSDFAIEVSGLQFKYKV--------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM-VGGGVVQV 73 (291)
T ss_pred cccceEEEeccEEeccc--------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc-ccCCeEEE
Confidence 34566777 66554322 2379999999999999999999999999999999999753 23488999
Q ss_pred CCEeCCc-c--cccCeEEEEcC----------CCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh
Q psy10223 88 DGTPMSP-Q--LFQTTCGYVNH----------RTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA 154 (606)
Q Consensus 88 ~G~~~~~-~--~~~~~i~yv~q----------~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 154 (606)
+|++.-. . .-.....|+.- +-.+-..+++.+-+ |+.. .... +|-+.+++.+++. .
T Consensus 74 lgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDId--l 141 (291)
T KOG2355|consen 74 LGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDID--L 141 (291)
T ss_pred cCcCccccccccccCceeEecccccccccccccccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheecc--c
Confidence 9976421 0 01122333322 11122345555433 4432 1111 3445666766664 2
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
.-+.+.+|-||||||.|++.|++.-++|+|||-|-.||...+.++++.|++-+++.|.||+..+|- -+.+.+...+++.
T Consensus 142 ~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI-FDGLe~Wpthl~y 220 (291)
T KOG2355|consen 142 RWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI-FDGLETWPTHLVY 220 (291)
T ss_pred eEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee-ccchhhcchhEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999985 4678889999999
Q ss_pred EcCCeEEEecChhHHHH
Q psy10223 235 LCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 235 L~~G~~v~~G~~~~~~~ 251 (606)
++.|+++-.-+.+++.+
T Consensus 221 i~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIKE 237 (291)
T ss_pred ecCCeeeeccccchhhh
Confidence 99999988655555544
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-20 Score=197.30 Aligned_cols=184 Identities=19% Similarity=0.276 Sum_probs=145.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
+..+++|+|++|.+|+-++|.||||||||+|||+|+|+-+ ..+|.+..-...- -+.+-|+||.|.+--. |.||
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp-~~~G~l~k~~~~~-----~~~lfflPQrPYmt~G-TLRd 519 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP-STGGKLTKPTDGG-----PKDLFFLPQRPYMTLG-TLRD 519 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc-cCCCeEEecccCC-----CCceEEecCCCCcccc-chhh
Confidence 4568889999999999999999999999999999999976 5778886432211 1458999999976555 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-----------ISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----------v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
.+.+....-. ..++....+++.+.|+.++|.|...+. -..||+||+||++.||.+.++|++-+|||.
T Consensus 520 QvIYP~~~~~--~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~ 597 (659)
T KOG0060|consen 520 QVIYPLKAED--MDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDEC 597 (659)
T ss_pred eeeccCcccc--ccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeech
Confidence 9988743211 112222345677888888887755432 247999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+++|......+.+.+|+ .|.|.|-+.|.+ .+.++=|.++-|+.
T Consensus 598 TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 598 TSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKFHDYVLRMDG 641 (659)
T ss_pred hhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhhhhEEEEecC
Confidence 999999998888888765 478988888864 57788899998875
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-21 Score=203.73 Aligned_cols=192 Identities=21% Similarity=0.272 Sum_probs=132.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC-CCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR-TDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~-~~~~~~lTV 116 (606)
+.+.+|++-++.+..|..++|+||||+|||||||+|+. |+| .+.+.. +..+. -+++.. +.+....++
T Consensus 91 G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v--~~f~ve-qE~~g--~~t~~~~~~l~~D~~~ 158 (582)
T KOG0062|consen 91 GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQV--SGFHVE-QEVRG--DDTEALQSVLESDTER 158 (582)
T ss_pred cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCc--CccCch-hheec--cchHHHhhhhhccHHH
Confidence 45789999999999999999999999999999999986 111 111111 11111 112111 112222233
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.+-+.--..+ .... +..+...++|..+|.++ ...+++++||||-|.|+++||||..+||||+|||||+.||..+
T Consensus 159 ~dfl~~e~~l--~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 159 LDFLAEEKEL--LAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred HHHHHhhhhh--hccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence 3222211111 0001 22233344888999976 4566789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE-EEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL-IYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~-v~~G~~~~~~~ 251 (606)
...+.+.|..+ ..|+|+++|+ +..+-+.|..|+.+++=|+ .|-|+-++..+
T Consensus 234 v~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 234 VAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 99999999875 3688888884 6678888888888877665 35576655443
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=184.37 Aligned_cols=86 Identities=15% Similarity=0.141 Sum_probs=71.0
Q ss_pred hhcccCCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEEecCCcchHHh
Q psy10223 153 VARRNISELTPSEHRRVVIGTQL----VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS-RAVLLTMEKPRSDVLP 227 (606)
Q Consensus 153 ~~~~~v~~LSgGerqRvsIa~aL----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g-~tii~t~h~~~~~i~~ 227 (606)
..+..+.+||+|||||+.++.++ +.+|+++++||||+|||+.++..+.+.|++.+++.| .++|+++|+.. ++.+
T Consensus 119 ~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~-~~~~ 197 (213)
T cd03277 119 LQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLL-PGLN 197 (213)
T ss_pred ccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhc-cCCc
Confidence 34567889999999999877554 589999999999999999999999999999876524 57888888754 4566
Q ss_pred cCC--eEEEEcCCe
Q psy10223 228 FLD--RTAYLCLGD 239 (606)
Q Consensus 228 ~~D--~v~vL~~G~ 239 (606)
.+| +|++|++|+
T Consensus 198 ~~~~~~v~~l~~g~ 211 (213)
T cd03277 198 YHEKMTVLCVYNGP 211 (213)
T ss_pred ccCceEEEEEecCc
Confidence 666 788898886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=184.72 Aligned_cols=153 Identities=14% Similarity=0.215 Sum_probs=110.8
Q ss_pred eEEeeEEEEeCCe-EEEEEcCCCccHHHHHHHHH-cCCCCCCee-EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 42 ILKDISLEVRPGE-VLAVLGSKGSGKRALLEVIS-RRSSGTTRG-EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 42 iL~~vs~~v~~Ge-~~~IlG~nGsGKSTLLk~L~-g~~~~~~~G-~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
-..++|+++++|+ +++|.||||||||||||+|+ +... ...| .+- ... ...++|..|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~-~~~G~~vp-----~~~---~~~~~~~~~~----------- 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM-AQSGLPIP-----AAE---GSSLPVFENI----------- 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH-HHcCCCcc-----ccc---cccCcCccEE-----------
Confidence 3568999999995 89999999999999999988 1111 0111 000 000 0012222221
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
+..++..+..+.....+|+|||||+.|+++ +.+|+++++|||++|||+..+..
T Consensus 76 --------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~ 128 (200)
T cd03280 76 --------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAA 128 (200)
T ss_pred --------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHH
Confidence 111222223445567899999999999988 48999999999999999999999
Q ss_pred HHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 199 IVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 199 i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+.. .++.+.+ .+.++|+++|+ .++.+++|++.+|++|++++.+
T Consensus 129 i~~~~l~~l~~-~~~~vi~~tH~--~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 129 LAIAILEELLE-RGALVIATTHY--GELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHh-cCCEEEEECCH--HHHHHHHhcCCCeEEEEEEEec
Confidence 964 6777764 58899999996 4688999999999999998774
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-20 Score=189.96 Aligned_cols=191 Identities=23% Similarity=0.378 Sum_probs=143.8
Q ss_pred CccEEEEEEEEeecccccC-ceeeee-eccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE
Q psy10223 9 EEEYYLKIDLQHPALVETG-SCFQRV-FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86 (606)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~ 86 (606)
.-+|.+.+-+--+....|. ..++.+ |+..+.++++++++|-|.=...++|+||||.||||||++|.|.+. |..|+.+
T Consensus 567 pKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~~GE~R 645 (807)
T KOG0066|consen 567 PKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PNDGELR 645 (807)
T ss_pred chheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CCcchhh
Confidence 3467777644333333332 234433 555577899999999999999999999999999999999999987 6777664
Q ss_pred ECCEeCCcccccCeEEEEcCCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-cCCCCCH
Q psy10223 87 LDGTPMSPQLFQTTCGYVNHRTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-NISELTP 163 (606)
Q Consensus 87 ~~G~~~~~~~~~~~i~yv~q~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-~v~~LSg 163 (606)
- ..|-+||+..|+.. +-..-|.-|.|.-..+ ++. +.++..|-.+||...+++ .+..|||
T Consensus 646 K--------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTikikdLSG 707 (807)
T KOG0066|consen 646 K--------NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTIKIKDLSG 707 (807)
T ss_pred c--------cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceEeeeecCC
Confidence 2 23556888877642 4444566665543322 222 346778899999877776 5899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
|||-||++|..-+..|+||||||||++||..+...+.+.++++ ...||+++|+.+
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeR 762 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDER 762 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccc
Confidence 9999999999999999999999999999999999999999876 234666678754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=190.48 Aligned_cols=171 Identities=25% Similarity=0.368 Sum_probs=125.5
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cccc-------------C--eEEEEcCCCCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQ-------------T--TCGYVNHRTDLI 111 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~-------------~--~i~yv~q~~~~~ 111 (606)
.++|++++|+||||-||||-+|+|+|.+. |--|+ +++.+-.+ +.+| . ++..-+|--.+.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~-PNLG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~i 173 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PNLGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLI 173 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc-cCCCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHH
Confidence 57999999999999999999999999887 33232 22211000 0011 0 122223322222
Q ss_pred CC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 112 PS---LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 112 ~~---lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|. =||+|-|.-.. .+-+.+++++.++|++..|+.+++|||||-|||+||.+++++++++++||||
T Consensus 174 Pk~~KG~v~elLk~~d------------e~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEps 241 (591)
T COG1245 174 PKVVKGKVGELLKKVD------------ERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPS 241 (591)
T ss_pred HHHhcchHHHHHHhhh------------hcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCc
Confidence 21 15555443211 1235688999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+-||...+....+.+|++++. +++||++-|+. .-+--+.|-|.+++.
T Consensus 242 SyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDL-avLD~lsD~vhI~YG 288 (591)
T COG1245 242 SYLDIRQRLNAARVIRELAED-GKYVIVVEHDL-AVLDYLSDFVHILYG 288 (591)
T ss_pred ccccHHHHHHHHHHHHHHhcc-CCeEEEEechH-HHHHHhhheeEEEec
Confidence 999999999999999999974 89999998853 334446788888875
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-19 Score=183.19 Aligned_cols=183 Identities=23% Similarity=0.400 Sum_probs=138.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-------CCeeEEEECCEeCCcccccCeEEEEcCCC-CC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-------TTRGEIILDGTPMSPQLFQTTCGYVNHRT-DL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~ 110 (606)
...+|+|+|++++|||+++|+|+|||||||||++|.|...+ |++|.|.+--.. ..+.+|-+. .-
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~Ep~ 466 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEYEPE 466 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCcccccc
Confidence 35799999999999999999999999999999999986431 566776552211 122333322 12
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|..-|+.|.+.- ... ......++|.+.|+.+ ...++.++||-|||.|+.||.++..+|.+++.||--
T Consensus 467 f~~~tilehl~s--------~tG---D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~ 535 (593)
T COG2401 467 FGEVTILEHLRS--------KTG---DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFA 535 (593)
T ss_pred cCchhHHHHHhh--------ccC---chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhh
Confidence 334455555421 011 1234578899999976 345667999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEE
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLI 241 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v 241 (606)
+.||+.|+..+.+-|.+++++.|.|+++++|+|. -+-.+ =|+++++.=|.+.
T Consensus 536 AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 536 AHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 9999999999999999999999999999999872 33344 4888888766543
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-19 Score=188.90 Aligned_cols=187 Identities=21% Similarity=0.287 Sum_probs=147.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+++++++..++.-+..+++|+||+||||+||++.|... +.+|.+... .|.+++|-.|...-+-.+.|.+ +
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-~~rgi~~~~--------~r~ri~~f~Qhhvd~l~~~v~~-v 447 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-PTRGIVGRH--------PRLRIKYFAQHHVDFLDKNVNA-V 447 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-cccceeeec--------ccceecchhHhhhhHHHHHhHH-H
Confidence 79999999999999999999999999999999999877 567766543 2567888888754333344433 3
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
.+..+.+ ++.. ++.++.-+..+||+ +.+...+.+||||||-||++|.....+|.+|+|||||+.||-.+-..+
T Consensus 448 d~~~~~~--pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL 521 (582)
T KOG0062|consen 448 DFMEKSF--PGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGAL 521 (582)
T ss_pred HHHHHhC--CCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHH
Confidence 3333332 2233 34577889999997 456666999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE-ecChhH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY-AGPTRL 248 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~-~G~~~~ 248 (606)
.+.|+.. .| .||+++|+ .+.+-.+|+.+++.++|++.- .|...+
T Consensus 522 ~~Al~~F---~G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 522 AKALKNF---NG-GVVLVSHD-EEFISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred HHHHHhc---CC-cEEEEECc-HHHHhhcCceeEEEcCCcEEeeeccHHH
Confidence 9999876 23 45666675 467899999999999999864 344433
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-18 Score=167.45 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=67.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 161 LTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 161 LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
||+|||||++||++++ .+|+++++|||+++||+..+..+.+.|+++++. |.++|+++|++ +..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999996 699999999999999999999999999998754 78999999975 4567899999997
Q ss_pred C
Q psy10223 237 L 237 (606)
Q Consensus 237 ~ 237 (606)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 6
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-19 Score=177.52 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=115.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTV~ 117 (606)
.+.+.+|+++..++|++++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-------------------HHHHHhCCCcCcccEEEe-----
Confidence 34689999999999999999999999999999998721 0111122 3333221111
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL--VKDPVLLLLDEP---TVNLD 192 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL--~~~p~llllDEP---TsgLD 192 (606)
.+++++..+++.+ ...+++|.|+++++.+++++ +.+|+++++||| |++||
T Consensus 72 ----------------------~~~~il~~~~l~d---~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD 126 (222)
T cd03285 72 ----------------------IVDCILARVGASD---SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYD 126 (222)
T ss_pred ----------------------ccceeEeeecccc---chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHH
Confidence 1233445556553 23678999999999999999 899999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
+...... .++.+.++.+.++|+++|. .++.+++|++..+++|++...++
T Consensus 127 ~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 127 GFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 9888543 3344544457899999995 57899999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-18 Score=163.31 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 161 LTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 161 LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
||+||+||+++|++|.. +|+++++|||++|+|+..+..+.+.+.++.++ +.++|+++|++ ++.+.+|+++.|+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999987 78999999999999999999999999998765 88999999975 4667899999986
Q ss_pred C
Q psy10223 237 L 237 (606)
Q Consensus 237 ~ 237 (606)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=171.27 Aligned_cols=147 Identities=17% Similarity=0.196 Sum_probs=106.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+++|+++.. |++++|+||||||||||||+|+|... +...|.++... .++.|.+.+++.+|+.|+
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 46888887765 79999999999999999999987532 11234433211 255667789999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.++.. ....+ .+++.++++.+++ .+|+++++||||+|||+..+..+
T Consensus 80 l~~~~s------~~~~e-~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l 126 (199)
T cd03283 80 LRDGIS------YFYAE-LRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAA 126 (199)
T ss_pred cccccC------hHHHH-HHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHH
Confidence 977542 11222 3567888887763 79999999999999999999887
Q ss_pred HH-HHHHHHHhCCcEEEEEecCCcchHHhc--CCeEEEE
Q psy10223 200 VS-MLSSYAKRKSRAVLLTMEKPRSDVLPF--LDRTAYL 235 (606)
Q Consensus 200 ~~-~L~~l~~~~g~tii~t~h~~~~~i~~~--~D~v~vL 235 (606)
.. .++.+.+ .+.++|+++|++. .+..+ .++|..+
T Consensus 127 ~~~ll~~l~~-~~~tiiivTH~~~-~~~~~~~~~~v~~~ 163 (199)
T cd03283 127 SAAVLKFLKN-KNTIGIISTHDLE-LADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHH-CCCEEEEEcCcHH-HHHhhhcCCCeEEE
Confidence 54 6788765 5889999999753 34333 4455444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-18 Score=173.79 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=68.4
Q ss_pred CCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 159 SELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
..||||||||+++|++++. +|+++++||||++||+..+..+.+.|+++++ +.++|+++|++. +.+.+|++++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~ 244 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFL 244 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEE
Confidence 3499999999999987654 9999999999999999999999999999864 689999999864 6789999999
Q ss_pred EcCCe
Q psy10223 235 LCLGD 239 (606)
Q Consensus 235 L~~G~ 239 (606)
|.+|+
T Consensus 245 l~~~~ 249 (276)
T cd03241 245 VEKEV 249 (276)
T ss_pred EEEec
Confidence 98864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.8e-17 Score=197.64 Aligned_cols=127 Identities=22% Similarity=0.290 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKD---PVLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~---p~llllDEPT 188 (606)
.|||.|.+.|... . .+..+.-+.|.++||... +.++...|||||.||+.||..|..+ +.+++|||||
T Consensus 1660 ~mtv~ea~~~F~~------~---~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1660 QTPIEEVAETFPF------L---KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred cCCHHHHHHHhhc------c---HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 3677776666432 1 123455678889999764 5788899999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC------CeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL------GDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~------G~~v~~G~~~~~~~ 251 (606)
+||++.....+++.|+++.+ .|.|||++.|++ ++.+.+|.++=|-. |++|+.|+++++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVS-LGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999986 588999998875 68888999999853 79999999999864
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=177.73 Aligned_cols=127 Identities=25% Similarity=0.355 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP---VLLLLDEPT 188 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p---~llllDEPT 188 (606)
.|||.|...|.... + ...+.-+.|.++||.-. +.+....|||||.|||-+|..|..+. .+++|||||
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPT 853 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCC
Confidence 36777777765531 1 23445677888898753 56778899999999999999999888 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc------CCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC------LGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~------~G~~v~~G~~~~~~~ 251 (606)
+||-.....++++.|.++.+ .|-|||++-|. -++.+.+|.|+=|- .|++|..|+|+++.+
T Consensus 854 TGLH~~Di~kLl~VL~rLvd-~GnTViVIEHN--LdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 854 TGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHN--LDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCHHHHHHHHHHHHHHHh-CCCEEEEEecc--cceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 99999999999999999987 58899998775 37999999999883 479999999999875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.1e-17 Score=190.52 Aligned_cols=136 Identities=18% Similarity=0.340 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHccCCCC---CC---HHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CE
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQ---VS---RYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VL 181 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~l 181 (606)
+-.+||.|.+.|.-.+..... .. -.+..++++ .|+.+||.+. .|+.+.+|||||||||.||++|..+| ++
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 346899999998544321110 00 012234443 6788899876 79999999999999999999999997 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
++|||||+|||+..+..+.+.|+++.+ .|.|||+++|++. ++ ..+|+|++| ++|++++.|+++++.
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 999999999999999999999999975 5899999999864 45 469999999 999999999998874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-17 Score=188.59 Aligned_cols=135 Identities=19% Similarity=0.318 Sum_probs=108.1
Q ss_pred CCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CEE
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSR------YVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VLL 182 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~ll 182 (606)
-.|||.|.+.|...+........ .+..++ -+.|..+||... .++.+.+|||||+|||.||++|+.+| +++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~r-l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKER-LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 46899999888766432110000 011122 234677899765 79999999999999999999999986 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+..+..+.+.|+++.+ .|.|||+++|++ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 512 ILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 512 VLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 99999999999999999999999976 589999999985 344 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=173.92 Aligned_cols=164 Identities=18% Similarity=0.288 Sum_probs=123.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..++..++|+|++|-.++|+||||||||+|.|+|+|+-+ . ++|.-..+ .+..+-|+||.|..- .-|.+|.
T Consensus 495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP-v------y~g~L~~P--~~~~mFYIPQRPYms-~gtlRDQ 564 (728)
T KOG0064|consen 495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP-V------YNGLLSIP--RPNNIFYIPQRPYMS-GGTLRDQ 564 (728)
T ss_pred ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCc-c------cCCeeecC--CCcceEeccCCCccC-cCcccce
Confidence 457899999999999999999999999999999999975 3 44443222 234589999998654 3466666
Q ss_pred HHHHHHc---cCCCCCCHHHHHHHHHHHHHHcCCchhhcccC---------CCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 120 LYYAAHL---SIGPQVSRYVRNARIRQVLADLALSNVARRNI---------SELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 120 l~f~~~~---~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v---------~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+-+.-.. + .++.+ ++..+.+|+.+.|++...+-. .-||||||||+.+||.+-++|+.-+|||-
T Consensus 565 IIYPdS~e~~~-~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEc 639 (728)
T KOG0064|consen 565 IIYPDSSEQMK-RKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDEC 639 (728)
T ss_pred eecCCcHHHHH-hcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhh
Confidence 5543110 0 01222 244667777777777665543 36999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
|++..+.....+.+..+ ..|.+.+-++|+|+
T Consensus 640 TsAvsidvE~~i~~~ak----~~gi~llsithrps 670 (728)
T KOG0064|consen 640 TSAVSIDVEGKIFQAAK----DAGISLLSITHRPS 670 (728)
T ss_pred hcccccchHHHHHHHHH----hcCceEEEeecCcc
Confidence 99998877777666654 46889999999986
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-17 Score=161.90 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=102.6
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
..++++.+|++++|+||||||||||||+|++..--...|... .. .+..+++..| ++..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~~--~~~~i~~~dq---i~~~~~~~d~----- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------PA--ESASIPLVDR---IFTRIGAEDS----- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------cc--cccccCCcCE---EEEEecCccc-----
Confidence 344556689999999999999999999999532101112110 00 1122333222 1222222211
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS-ML 203 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~-~L 203 (606)
.+...+.++.++ ||++.+.+++.+|+++++||||+|||+.....+.. ++
T Consensus 85 -----------------------------i~~~~s~~~~e~-~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll 134 (202)
T cd03243 85 -----------------------------ISDGRSTFMAEL-LELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVL 134 (202)
T ss_pred -----------------------------ccCCceeHHHHH-HHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHH
Confidence 112223445444 45777788899999999999999999999888765 45
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
+.+.+ .+.++|+++|++ ++.+.+|++..+..|++...++..+
T Consensus 135 ~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 135 EHLLE-KGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHh-cCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 65554 588999999864 6788999999999999988876544
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-16 Score=156.61 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=99.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCCCCCCCHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDLIPSLTVE 117 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTV~ 117 (606)
++.+.+|+++.+++|++++|+||||+|||||||+|++..- ..++| ++ +...+.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999987631 00111 11 2223445555
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|++.. .++..+..++..+.+|+|++|+ +.+.+++++|+++++|||++|+|+....
T Consensus 73 d~I~~------------------------~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~ 127 (204)
T cd03282 73 NRLLS------------------------RLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGF 127 (204)
T ss_pred hheeE------------------------ecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHH
Confidence 55532 2233333345567889888865 5666788999999999999999998866
Q ss_pred HHH-HHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 198 LIV-SMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 198 ~i~-~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+. ..++.+.+ .+.++|+++|.. ++.+.+
T Consensus 128 ~l~~~il~~l~~-~~~~~i~~TH~~--~l~~~~ 157 (204)
T cd03282 128 AISLAILECLIK-KESTVFFATHFR--DIAAIL 157 (204)
T ss_pred HHHHHHHHHHHh-cCCEEEEECChH--HHHHHh
Confidence 654 45666665 489999999964 344443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=155.66 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 158 ISELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ +.++| ++|+. .++.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~q~ii-~~~~~-~~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----VQTFV-TTTDL-ADFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----CCEEE-EeCCc-hhccch
Confidence 4568999999999999985 799999999999999999999999999764 23444 44543 356666
Q ss_pred C---CeEEEEcCCeE
Q psy10223 229 L---DRTAYLCLGDL 240 (606)
Q Consensus 229 ~---D~v~vL~~G~~ 240 (606)
+ ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.5e-15 Score=155.90 Aligned_cols=179 Identities=20% Similarity=0.320 Sum_probs=136.9
Q ss_pred ceeeEEeeEEEEeCC-----eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~~v~~G-----e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~ 113 (606)
-+.-+.++.+.|+.| |++..+|.||.|||||++.++|++++...|+|-. -.++|=+|.-.--..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc-----------cceeccccccCcccc
Confidence 345677888888877 5789999999999999999999987333344422 235565665443345
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
-||++.+.--.+ +.....+-+.++++-|.+++..|+.+.+|||||+|||+||..|=..+++++.|||.+-||+
T Consensus 417 ~tvR~ll~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS 489 (592)
T KOG0063|consen 417 GTVRQLLHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS 489 (592)
T ss_pred chHHHHHHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence 689987754322 1112335678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
..+..--+.+++.--..++|-.++-|+-. -.--++|||++..
T Consensus 490 eQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 490 EQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 99999999998875556778888877422 2234688887654
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-16 Score=164.76 Aligned_cols=205 Identities=22% Similarity=0.296 Sum_probs=141.8
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc-------ccc---cCeEEEEcC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP-------QLF---QTTCGYVNH 106 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~-------~~~---~~~i~yv~q 106 (606)
..+.++.|-|+.|-.|..++++||||-||||||+-|+.+-- -|..=+|++-.+.+-. ..+ .++...+.+
T Consensus 275 ~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLee 354 (807)
T KOG0066|consen 275 QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEE 354 (807)
T ss_pred ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHH
Confidence 34678899999999999999999999999999999997631 1222234443332210 000 011111111
Q ss_pred CCC-----CCCCCCHHHHHHHH-HHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC
Q psy10223 107 RTD-----LIPSLTVEQTLYYA-AHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP 179 (606)
Q Consensus 107 ~~~-----~~~~lTV~e~l~f~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p 179 (606)
++. --...|+.|-|.-. ..++. +.....+.+++.+|.-+|.++- .+++....|||-|.||++||||...|
T Consensus 355 e~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEP 431 (807)
T KOG0066|consen 355 EAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEP 431 (807)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCc
Confidence 110 11235666655432 22221 1222345678899999999864 56667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHH
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLML 250 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~ 250 (606)
.+|.|||||+.||......+-+.|..|. +|.++++|+. ..+-+.|..|+.|++-++- |.|+-...+
T Consensus 432 TLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQ-gFLD~VCtdIIHLD~qkLhyYrGNY~~FK 498 (807)
T KOG0066|consen 432 TLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQ-GFLDSVCTDIIHLDNQKLHYYRGNYTLFK 498 (807)
T ss_pred eeeeecCCccccccceeeehhhHHhhhh----heeEEEeccc-chHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 9999999999999999999999998874 4778877864 4788899999999987764 446544433
|
|
| >PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.8e-16 Score=134.44 Aligned_cols=63 Identities=29% Similarity=0.535 Sum_probs=58.4
Q ss_pred CCCCCCccCC--hhHHHhhhcCCCCCcccccceeeechhhhhhhhhCCCCCCcccccccccchhHHHHHHHHHHhhc
Q psy10223 529 PHPFGCRYTD--GASFLSERYGHETGDFSFFITKYTDGASFLSERYGHETGDFSLSDVLDSNFNMTITLSFAFTLMD 603 (606)
Q Consensus 529 ~~~~~c~y~~--g~~~l~~~~g~~~g~~~~~~~~~v~g~~y~~~~~~~~~~~~~~~~~wr~n~gi~~~~~~~~~~~~ 603 (606)
.+|.|++|++ ++++.|+..|+.+| +.+|+||+||+.+|+ |+++|+|| ||||+++|+++|+++.
T Consensus 2 ~iP~Gp~Y~~~~~~~q~C~~~Ga~~G------~~~V~G~~YL~~~y~-----y~~sh~WR-N~GIli~f~i~f~~~~ 66 (103)
T PF06422_consen 2 LIPSGPGYDNISPANQVCAVVGAQPG------STYVSGDDYLEESYG-----YSYSHRWR-NFGILIAFWIFFIVLT 66 (103)
T ss_pred cCCCCCCCCCCCCCcCccCCCCCCCC------ccEEeHHHHHhhhcc-----ccccchhh-hHHHHHHHHHHHHHHH
Confidence 4789999998 56999999999999 669999999999999 99999999 9999999999999863
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-15 Score=148.55 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=106.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+.+|+++..++ ++++|.||||||||||||+|++..- -|+ .|..+.. .+..++++.| +++.+++.|+
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~---l~~---~g~~vp~--~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIAL---LAQ---IGSFVPA--SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHH---Hhc---cCCeecc--ccceecceee---EeccCCchhh
Confidence 4689999999987 9999999999999999999986431 011 1222211 1345666643 5678888887
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC---CCCCCHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP---TVNLDPLST 196 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP---TsgLD~~~~ 196 (606)
+..+. +.. ..|+++++-+...+.+|+++++||| |++||....
T Consensus 86 ls~g~--------s~f---------------------------~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~ 130 (216)
T cd03284 86 LAGGR--------STF---------------------------MVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI 130 (216)
T ss_pred hccCc--------chH---------------------------HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH
Confidence 75321 110 1223333333444679999999999 888887652
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
....++.+.+..+.++|+++|+. ++.+++|++.-+.+|++...+..+++
T Consensus 131 --~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 131 --AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred --HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 23344444443478899999974 78889998888888888776665554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=147.84 Aligned_cols=139 Identities=14% Similarity=0.103 Sum_probs=96.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~ 129 (606)
.-++|+||||||||||+++|+|..+ +.+|+|.++|+++.. ..+.+.+++++|.+ +.+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~-------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP-------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC-CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch--------
Confidence 5789999999999999999999987 788999999998742 23445567778864 344555554421
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
+ .+ | .....+..+|+++++|||++ ...+..+++.+ +
T Consensus 182 ----k---~~------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~-~- 217 (270)
T TIGR02858 182 ----K---AE------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEAL-H- 217 (270)
T ss_pred ----H---HH------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHH-h-
Confidence 0 00 0 02223336999999999974 23344455554 3
Q ss_pred CCcEEEEEecCCcch-H-----------HhcCCeEEEEcCCeEEEecChhH
Q psy10223 210 KSRAVLLTMEKPRSD-V-----------LPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 210 ~g~tii~t~h~~~~~-i-----------~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
.|.++|+|+|.+..+ + ...|||+++|++|+ ..|.+++
T Consensus 218 ~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 218 AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 489999999965332 2 26799999999887 5555544
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.9e-14 Score=137.07 Aligned_cols=89 Identities=13% Similarity=0.103 Sum_probs=61.5
Q ss_pred CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV-SMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 149 gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~-~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
++.+..++..+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. ..++.+.++.+.++|+++|++ ++.+
T Consensus 50 ~~~d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~ 126 (185)
T smart00534 50 GASDSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTK 126 (185)
T ss_pred CCCCchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHH
Confidence 3333445566788888776444333 34599999999999999999888865 556666653478899999975 5788
Q ss_pred cCCeEEEEcCCeE
Q psy10223 228 FLDRTAYLCLGDL 240 (606)
Q Consensus 228 ~~D~v~vL~~G~~ 240 (606)
++|+---+..++.
T Consensus 127 ~~~~~~~v~~~~~ 139 (185)
T smart00534 127 LADEHPGVRNLHM 139 (185)
T ss_pred HhhcCccceEEEE
Confidence 8875333333443
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-15 Score=144.83 Aligned_cols=160 Identities=28% Similarity=0.378 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhH
Q psy10223 349 SRNGLIFSSISGSYFISTFIAAFTFPVHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTD 428 (606)
Q Consensus 349 ~r~g~lf~~~~~~~f~~~~~~i~~~~~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~ 428 (606)
++.|++++.+...++............+|..+.||+..+.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~ 129 (210)
T PF01061_consen 51 NRPGLIFGSIIFSFFSSISGSSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE-S 129 (210)
T ss_pred ccceeeehhhHHhhhhhcccchhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc-c
Confidence 456666666655554444444467789999999999999999999999999999999999999999999999998765 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHHH
Q psy10223 429 LFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSRQ 508 (606)
Q Consensus 429 ~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~n 508 (606)
++.+++.++++..++.+++..+++.+++...+......+ ...+++++|.+.|.+.+|+|++|+.|+||++|+.|++..+
T Consensus 130 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~ 208 (210)
T PF01061_consen 130 FFLFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLI-LLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAA 208 (210)
T ss_pred chheecccccccccccccccccccchhhhhhhhhhhhhc-ccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666777777788887777766555555444 4566788999999999999999999999999999999877
Q ss_pred hc
Q psy10223 509 MF 510 (606)
Q Consensus 509 ef 510 (606)
+|
T Consensus 209 ~f 210 (210)
T PF01061_consen 209 LF 210 (210)
T ss_pred HC
Confidence 65
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-12 Score=133.84 Aligned_cols=77 Identities=17% Similarity=0.263 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 159 SELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
..+|.||+|++.||+.|+ .+|+|+++|||+++||+..+..+++.|.++ +..+++|+|++. .+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~-~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLE-DLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChh-hhhhhh
Confidence 479999999999999886 799999999999999999999999988753 346777777653 444553
Q ss_pred --CeEEEEcCCeE
Q psy10223 230 --DRTAYLCLGDL 240 (606)
Q Consensus 230 --D~v~vL~~G~~ 240 (606)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57999999986
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-13 Score=138.02 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 139 ~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
+.+.+.+...++... .+|||||.+++||.-|+ .++++++||||.++||...+..+.++|+++.+ +.-+
T Consensus 121 ~~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ 192 (220)
T PF02463_consen 121 KDLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQF 192 (220)
T ss_dssp HHHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEE
T ss_pred ccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence 345566665555432 89999999999997653 46889999999999999999999999999864 3567
Q ss_pred EEEecCCcchHHhcCCeEEEEc
Q psy10223 215 LLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 215 i~t~h~~~~~i~~~~D~v~vL~ 236 (606)
|+++|++ .+++.+|+.+.+.
T Consensus 193 ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 193 IITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp EEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccc--ccccccccccccc
Confidence 7888874 6899999988764
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=127.88 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=85.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC-CCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI-PSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~-~~lTV~e~ 119 (606)
.+=+|+++.=..+..++|.||||+|||||||.|+....-...|..... -...++|..|....+ ...++.+.
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a--------~~~~~~~~d~i~~~l~~~~si~~~ 88 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA--------DSATIGLVDKIFTRMSSRESVSSG 88 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc--------CCcEEeeeeeeeeeeCCccChhhc
Confidence 455566654222379999999999999999999832100123433221 123456665543211 11122111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELT--PSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LS--gGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
+| .-|.||++++++++.+|+++++|||++|+|+....
T Consensus 89 -----------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~ 127 (213)
T cd03281 89 -----------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGA 127 (213)
T ss_pred -----------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHH
Confidence 12 34678999999999999999999999999997655
Q ss_pred HH-HHHHHHHHHhC--CcEEEEEecCC
Q psy10223 198 LI-VSMLSSYAKRK--SRAVLLTMEKP 221 (606)
Q Consensus 198 ~i-~~~L~~l~~~~--g~tii~t~h~~ 221 (606)
.+ ...++.+.+.. +.++|+++|.+
T Consensus 128 ~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 128 GLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 54 56888886531 35788888864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-12 Score=134.54 Aligned_cols=187 Identities=22% Similarity=0.285 Sum_probs=126.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccC-----e----------EEEEcCCCCCCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQT-----T----------CGYVNHRTDLIPS 113 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~-----~----------i~yv~q~~~~~~~ 113 (606)
+||++++++|.||-||||-||+++|..+++. |.-. ++.+..+ ..+|. . ...-+|.-..+|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnl-g~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNL-GRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCC-CCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 6899999999999999999999999987432 2110 1100000 00110 0 0000111111111
Q ss_pred ---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 114 ---LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 114 ---lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+|+++| .+...++..+++++.+.|.+..++.+..|||||-||.+||.+.+.++++..+|||.+-
T Consensus 176 ~~k~~v~~~l------------~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsY 243 (592)
T KOG0063|consen 176 AVKGTVGSLL------------DRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSY 243 (592)
T ss_pred HHHHHHHHHH------------HHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCccc
Confidence 1222222 1222334567888999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC-----CeEEEecChhHHHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL-----GDLIYAGPTRLMLEYF 253 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~-----G~~v~~G~~~~~~~~f 253 (606)
||...+..-...+|.+.. ..+=+|++-|+.+ -+--+.|-+++|+. |-+..--+.++....|
T Consensus 244 LDVKQRLkaA~~IRsl~~-p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 244 LDVKQRLKAAITIRSLIN-PDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred chHHHhhhHHHHHHHhhC-CCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999999999999999976 4677888777643 34445688888875 3444434455555555
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-12 Score=150.27 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=88.9
Q ss_pred eEEEEeCC-eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 46 ISLEVRPG-EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 46 vs~~v~~G-e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
+|+.+.+| ++++|.||||+|||||||+|+|..-.+..| ..+... ....++|..|...
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G------~~Vpa~-~~~~~~~~d~i~~--------------- 371 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG------IPIPAN-EHSEIPYFEEIFA--------------- 371 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC------CCccCC-ccccccchhheee---------------
Confidence 68888877 999999999999999999999862101222 111000 0011222111100
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV-SML 203 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~-~~L 203 (606)
. + +........++.+|+|+++++.|++.+ .+|+++++|||++|+|+.....+. .+|
T Consensus 372 ~------i----------------~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiL 428 (771)
T TIGR01069 372 D------I----------------GDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISIL 428 (771)
T ss_pred e------c----------------ChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence 0 0 001111233567999999999998876 899999999999999999999984 677
Q ss_pred HHHHHhCCcEEEEEecCCc
Q psy10223 204 SSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~ 222 (606)
+.+.+ .|.++|+++|+..
T Consensus 429 e~l~~-~g~~viitTH~~e 446 (771)
T TIGR01069 429 EYLLK-QNAQVLITTHYKE 446 (771)
T ss_pred HHHHh-cCCEEEEECChHH
Confidence 77765 5888999999753
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-12 Score=114.40 Aligned_cols=74 Identities=14% Similarity=0.134 Sum_probs=61.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
..+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ...++.+++++|+ ++ .-|+
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti 71 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRL 71 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhH
Confidence 46899999999999999999999999999999986 5889999988743 2345567777777 33 3589
Q ss_pred HHHHHHH
Q psy10223 117 EQTLYYA 123 (606)
Q Consensus 117 ~e~l~f~ 123 (606)
+|||.++
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=122.00 Aligned_cols=142 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+.+|+++.+++|++++|.||||+||||+||+|++..--+..|...... ..+-..+.+-..-+...|.+...+
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~~~~~~~~i~~~~~~~d~~~~~~----- 91 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SATLSIFDSVLTRMGASDSIQHGM----- 91 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ceEEeccceEEEEecCcccccccc-----
Confidence 46899999999999999999999999999999999842113446544321 111011111112222222211111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+. . ..|-+|++-...-+.+|+++++|||.+|.|+.....+
T Consensus 92 -------------St--F-------------------------~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i 131 (222)
T cd03287 92 -------------ST--F-------------------------MVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAI 131 (222)
T ss_pred -------------ch--H-------------------------HHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHH
Confidence 00 0 1222333333334678999999999999997777764
Q ss_pred -HHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 200 -VSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 200 -~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
...++.+.+..+.++|+++|.+ ++.++.
T Consensus 132 ~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 132 AYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 5667777654578999999975 344443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-12 Score=126.48 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPT-----VNLDPLSTYLIVSMLSSYAK 208 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPT-----sgLD~~~~~~i~~~L~~l~~ 208 (606)
-|++++.||++++.+|+++++|||| +|||+.++.++.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999874
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=125.88 Aligned_cols=173 Identities=18% Similarity=0.244 Sum_probs=111.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC---C--------cccccCeEEEEcCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM---S--------PQLFQTTCGYVNHRT 108 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~---~--------~~~~~~~i~yv~q~~ 108 (606)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|..+ +..|.|.+.|+.- . ...+++.++++.+.+
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 4689999 9999999999999999999999999999987 6789999865433 2 112566788887654
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCH-HHHHH-HHHHHHHhhCCCEEEE
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTP-SEHRR-VVIGTQLVKDPVLLLL 184 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSg-GerqR-vsIa~aL~~~p~llll 184 (606)
.- +.+-+.-+ . ..-.+.|.+.+-|..- ..| +++- -+-+| +++ .+
T Consensus 224 ~~-----~~~r~~~~-~-----------~a~~iAEyfr~~g~~Vll~~D----sltr~A~A~rEisl-----------~~ 271 (438)
T PRK07721 224 QP-----ALMRIKGA-Y-----------TATAIAEYFRDQGLNVMLMMD----SVTRVAMAQREIGL-----------AV 271 (438)
T ss_pred CC-----HHHHHHHH-H-----------HHHHHHHHHHHCCCcEEEEEe----ChHHHHHHHHHHHH-----------hc
Confidence 31 11111100 0 0011122222222110 011 1110 00000 111 12
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 185 DEP--TVNLDPLSTYLIVSMLSSYAK-RKSR-----AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 185 DEP--TsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.|| |+|+|+....++.++++++.+ ..|. ||++.+|+-. + .+||++..+.+|+++.+++..+.
T Consensus 272 ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~dG~Ivls~~la~~ 341 (438)
T PRK07721 272 GEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILDGHFVLDRQLANK 341 (438)
T ss_pred CCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecCEEEEEeccHHHC
Confidence 343 789999999999999999874 3465 8888888654 3 78999999999999999987653
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-11 Score=144.67 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=63.5
Q ss_pred cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 155 RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS-MLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~-~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
....+.+|+|++|++.|++++ .+|+++++|||++|+|+.....+.. ++..+.+ .|.++|+++|++ +.....+|+..
T Consensus 385 ~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~-el~~~~~~~~~ 461 (782)
T PRK00409 385 EQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYK-ELKALMYNREG 461 (782)
T ss_pred hhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChH-HHHHHHhcCCC
Confidence 345678999999999999998 8999999999999999999988865 5666654 588999999974 23333344443
Q ss_pred EEcCCeEEE
Q psy10223 234 YLCLGDLIY 242 (606)
Q Consensus 234 vL~~G~~v~ 242 (606)
+. ++.+.+
T Consensus 462 v~-~~~~~~ 469 (782)
T PRK00409 462 VE-NASVEF 469 (782)
T ss_pred eE-EEEEEE
Confidence 33 455544
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.7e-11 Score=136.10 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE
Q psy10223 159 SELTPSEHRRVVIGTQLVKD----PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY 234 (606)
Q Consensus 159 ~~LSgGerqRvsIa~aL~~~----p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v 234 (606)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +.+||+++|+| .+...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChH--HHHHhcCeEEE
Confidence 36899999999999999985 699999999999999999999999999963 78999999986 35578999999
Q ss_pred EcCCe
Q psy10223 235 LCLGD 239 (606)
Q Consensus 235 L~~G~ 239 (606)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98864
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-11 Score=136.10 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=69.2
Q ss_pred cCCCCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 157 NISELTPSEHRRVVIGTQLV----------KDPVLLLLDEPT-VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 157 ~v~~LSgGerqRvsIa~aL~----------~~p~llllDEPT-sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .+.++|+++|++ +.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~--~~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKD--HD 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECch--hc
Confidence 45789999999999999987 599999999998 789999999999999987 378899999985 45
Q ss_pred HhcCCeEEEEcC-CeE
Q psy10223 226 LPFLDRTAYLCL-GDL 240 (606)
Q Consensus 226 ~~~~D~v~vL~~-G~~ 240 (606)
...+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 678999999986 553
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.1e-11 Score=142.41 Aligned_cols=86 Identities=16% Similarity=0.033 Sum_probs=76.8
Q ss_pred chhhcccCCCCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 151 SNVARRNISELTPSEHRRVVIGTQLVK----------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 151 ~~~~~~~v~~LSgGerqRvsIa~aL~~----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
....++.++.|||||++||+||++|+. +|+++|+||||+|||+.+...+++.|+.+.+ .|++|++++|.
T Consensus 941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~ 1019 (1042)
T TIGR00618 941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHV 1019 (1042)
T ss_pred CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 445567889999999999999999986 7999999999999999999999999999976 68999999887
Q ss_pred CcchHHhcCCeEEEEcCC
Q psy10223 221 PRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 221 ~~~~i~~~~D~v~vL~~G 238 (606)
+ +....++|+|.|++.|
T Consensus 1020 ~-~~~~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1020 P-EFRERIPHRILVKKTN 1036 (1042)
T ss_pred H-HHHHhhCCEEEEEECC
Confidence 5 5688999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-10 Score=109.47 Aligned_cols=145 Identities=20% Similarity=0.165 Sum_probs=97.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~ 135 (606)
+.|.||+|+|||||.--++-... .. | ..+.|+.=+ .|..+.+.....+. ..-
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~------g---------~~v~~~s~e------~~~~~~~~~~~~~g----~~~- 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--AR------G---------EPGLYVTLE------ESPEELIENAESLG----WDL- 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HC------C---------CcEEEEECC------CCHHHHHHHHHHcC----CCh-
Confidence 68999999999998875542210 00 1 123343221 24444444433321 111
Q ss_pred HHHHHHHHHHHHcCCchhhcccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHH
Q psy10223 136 VRNARIRQVLADLALSNVARRNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLD---PLSTYLIVSMLSSY 206 (606)
Q Consensus 136 ~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD---~~~~~~i~~~L~~l 206 (606)
+ .+...|+....+..+..+|+|++| +.....+...+|+++++|||++.+| ...+..+.+.++.+
T Consensus 54 ------~-~l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 54 ------E-RLEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred ------H-HHHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 1 123345556667888899999998 4555555677999999999999999 88888888888888
Q ss_pred HHhCCcEEEEEecCCcc--------hHHhcCCeEEEEc
Q psy10223 207 AKRKSRAVLLTMEKPRS--------DVLPFLDRTAYLC 236 (606)
Q Consensus 207 ~~~~g~tii~t~h~~~~--------~i~~~~D~v~vL~ 236 (606)
++ .|.|+|+++|.... .+..++|.++.|+
T Consensus 127 ~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 127 KR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 75 48899998886543 2678899999887
|
A related protein is found in archaea. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-10 Score=131.75 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=68.2
Q ss_pred CCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 160 ELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.+||||+|||+||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||+++|+| .+..++|+.+++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~--~~~~~ad~~~~v 505 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLP--QVAGCGHQHFFV 505 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH--HHHHhCCEEEEE
Confidence 479999999999999997 5899999999999999999999999999964 58899999987 466899999999
Q ss_pred cCC
Q psy10223 236 CLG 238 (606)
Q Consensus 236 ~~G 238 (606)
.++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 875
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.8e-10 Score=113.61 Aligned_cols=151 Identities=12% Similarity=0.158 Sum_probs=91.8
Q ss_pred EEEeCCeEEEEEcCCCccHHHH-HHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRAL-LEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTL-Lk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
+-+++|++++|.|+|||||||| ++.+++..+ . | ..+.|+..+ .|..+.+.....+
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g---------------~~~~yi~~e------~~~~~~~~~~~~~ 74 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQ-N--G---------------YSVSYVSTQ------LTTTEFIKQMMSL 74 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-C--C---------------CcEEEEeCC------CCHHHHHHHHHHh
Confidence 3589999999999999999999 688887643 1 1 123444322 2455555544332
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNL----DPLSTYL 198 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgL----D~~~~~~ 198 (606)
.. .. ++.... +.-...+.. ..+|+++.++-.+.+.+- .+|+++++||||+++ |+....+
T Consensus 75 g~--~~---------~~~~~~-~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~ 141 (230)
T PRK08533 75 GY--DI---------NKKLIS-GKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVND 141 (230)
T ss_pred CC--ch---------HHHhhc-CcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHH
Confidence 11 10 111110 100011111 235666655544444332 369999999999999 8888889
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcc------hHHhcCCeEEEEc
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRS------DVLPFLDRTAYLC 236 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~------~i~~~~D~v~vL~ 236 (606)
+.+.++.+++. |.|+++++++... .+..++|-|+.|+
T Consensus 142 l~~~l~~l~~~-g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 142 LMAFFKRISSL-NKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHhC-CCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 99999998764 7788887664321 1244567777776
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.2e-11 Score=118.08 Aligned_cols=63 Identities=29% Similarity=0.479 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 158 ISELTPSEHRRVVIGTQLVKDP---VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL~~~p---~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
...+|.|+||.+.|+..+...+ .++++|||-++|+|..+..+++.|++.++ .+.-+|+|||.|
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 3567999999999998888777 89999999999999999999999988876 578899999976
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.3e-10 Score=114.23 Aligned_cols=180 Identities=15% Similarity=0.111 Sum_probs=100.1
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-eeEEEE--CCE-eCCcccccC---eEEEEcCCCCCCCCCCH---H
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIIL--DGT-PMSPQLFQT---TCGYVNHRTDLIPSLTV---E 117 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-~G~I~~--~G~-~~~~~~~~~---~i~yv~q~~~~~~~lTV---~ 117 (606)
..+.+||.++|+||+|+|||||++.|++...... ...+.+ -+. ..+...+.+ .+..+.+-+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 4688999999999999999999999998765210 122221 121 122111211 1222333222 111100 0
Q ss_pred HHHHHHHHccC-CCCCC-HHHHHHHHHHHHHHcCCchhhcccCCCCCHHH--------HHHHHHHHHHhhCCCEEEEeCC
Q psy10223 118 QTLYYAAHLSI-GPQVS-RYVRNARIRQVLADLALSNVARRNISELTPSE--------HRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 118 e~l~f~~~~~~-~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe--------rqRvsIa~aL~~~p~llllDEP 187 (606)
.-+..+...+. +...- --+...+..+..+... ...-+.+|||+ +||+++|+++..+++|.++ |
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~-----~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~ 162 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVV-----PPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--A 162 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhcc-----ccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--e
Confidence 11111111000 00000 0000011111222211 12234579999 9999999999999999999 9
Q ss_pred CCCCCHHHHHH-HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 188 TVNLDPLSTYL-IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 188 TsgLD~~~~~~-i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
|+.+|+.+... ++ +.++.. .+.|.|+.+|.. .....+|.|.+|+.|+.
T Consensus 163 T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~l--a~~~~~paI~vl~s~sr 211 (249)
T cd01128 163 TALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRL--AERRIFPAIDILKSGTR 211 (249)
T ss_pred eheecCCCcccchH--HHHHhc-CCCcEEEEchHH--hhCCCCCeEEEcCCCCc
Confidence 99999644433 44 444432 467788878864 45778999999999986
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.6e-09 Score=108.05 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=85.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+.+-+|+++..++|++++|.||||+||||+++++++..--...| ..+..+ +..+++ -+.++..+...|+
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G------~~vpa~--~~~i~~---~~~i~~~~~~~d~ 85 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMG------MDVPAK--SMRLSL---VDRIFTRIGARDD 85 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcC------CccCcc--ccEecc---ccEEEEecCcccc
Confidence 57899999999999999999999999999999998652100001 111111 011111 1122222222222
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+... .+. .. .|-+|++-....+.+|+++++|||.+|+|+.....+
T Consensus 86 ~~~~--------~St--F~-------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~l 130 (218)
T cd03286 86 IMKG--------EST--FM-------------------------VELSETANILRHATPDSLVILDELGRGTSTHDGYAI 130 (218)
T ss_pred cccC--------cch--HH-------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHH
Confidence 2110 010 00 133333333334578999999999999999999998
Q ss_pred HHH-HHHHHHhCCcEEEEEecCC
Q psy10223 200 VSM-LSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 200 ~~~-L~~l~~~~g~tii~t~h~~ 221 (606)
... ++.+.+..+.++|+++|..
T Consensus 131 a~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 131 AHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHHHhcCCcEEEEeccH
Confidence 888 7777654478888888874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.05 E-value=6e-10 Score=117.02 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=94.4
Q ss_pred eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-CCcccccCeEEEEcCCCC-CCCCCCHHHHHHHH
Q psy10223 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-MSPQLFQTTCGYVNHRTD-LIPSLTVEQTLYYA 123 (606)
Q Consensus 46 vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~i~yv~q~~~-~~~~lTV~e~l~f~ 123 (606)
+++.+++|+.++|.||+|||||||+++|++..+ +..|.+.++... +... .+..+....+... -....|..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~~------ 208 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTPK------ 208 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCHH------
Confidence 456788999999999999999999999999986 566777765311 1100 1122222221100 00011111
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L 203 (606)
-.+..+|-.+|+++++|||.+ .+..+.+
T Consensus 209 ---------------------------------------------~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l 236 (308)
T TIGR02788 209 ---------------------------------------------DLLQSCLRMRPDRIILGELRG-------DEAFDFI 236 (308)
T ss_pred ---------------------------------------------HHHHHHhcCCCCeEEEeccCC-------HHHHHHH
Confidence 124445677999999999996 3455667
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.+. .++.+++.|+|..+ +.+..||+..|..|++...|.+.+..
T Consensus 237 ~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 237 RAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 6664 34456788888653 67779999999999998888887765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-11 Score=113.39 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=64.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEP--TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~~p~llllDEP--TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
+.+..+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++.+ .+.++|+++|.. .+...+|++.
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~ 146 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIK 146 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHh
Confidence 44557999999999999999999999999995 44444 335666666653 578999999963 5678899999
Q ss_pred EEcCCeEEEe
Q psy10223 234 YLCLGDLIYA 243 (606)
Q Consensus 234 vL~~G~~v~~ 243 (606)
.+.+|++++.
T Consensus 147 ~~~~~~i~~~ 156 (174)
T PRK13695 147 SRPGGRVYEL 156 (174)
T ss_pred ccCCcEEEEE
Confidence 9999998765
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=120.26 Aligned_cols=137 Identities=19% Similarity=0.355 Sum_probs=105.2
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHH------HHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhC--CCE
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ------VLADLALSN-VARRNISELTPSEHRRVVIGTQLVKD--PVL 181 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~--p~l 181 (606)
+..+++.|.+.|...+.+.. ..+...+..+++ .|..+||.- .+++....|||||.||+-+|..+=++ --+
T Consensus 426 ~~~msi~~~~~f~~~l~l~~-~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVl 504 (935)
T COG0178 426 ISEMSIADALEFFENLKLSE-KEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 504 (935)
T ss_pred HhhccHHHHHHHHHhCCCch-hhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeE
Confidence 44577888888877654211 111111222222 233457765 36788899999999999999999776 347
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
++||||+-||-+..-..+++.|+++.+ .|-|+|++-|+ ++....+|+|+=| +.|++++.|+++++++
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHD--edti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHD--EDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecC--HHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 899999999999999999999999976 68899999887 4789999999987 4589999999999985
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.3e-10 Score=105.01 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch
Q psy10223 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTV----------NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~~~p~llllDEPTs----------gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~ 224 (606)
..+.++.++...+.+...+|+++++||+++ ++|...+..+.+++.. +++.+.++++++|.+..+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLER-ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HhcCCceEEEEEecCCcc
Confidence 445566667888889999999999999995 4455555555555544 455689999999977544
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=127.52 Aligned_cols=79 Identities=23% Similarity=0.280 Sum_probs=67.4
Q ss_pred ccCCCCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-C-cEEEEEecCCcchHHh
Q psy10223 156 RNISELTPSEHRRVVI------GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK-S-RAVLLTMEKPRSDVLP 227 (606)
Q Consensus 156 ~~v~~LSgGerqRvsI------a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~-g-~tii~t~h~~~~~i~~ 227 (606)
..+..||||||+|++| |++++.+|++++|||||+|||+..+..+.+.|+...+.. + .++|+++|++ +..+
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLS 874 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHH
Confidence 3578999999999975 589999999999999999999999999999998654433 3 4788888986 4568
Q ss_pred cCCeEEEEc
Q psy10223 228 FLDRTAYLC 236 (606)
Q Consensus 228 ~~D~v~vL~ 236 (606)
.||+++.+.
T Consensus 875 ~~d~ii~~~ 883 (895)
T PRK01156 875 VADVAYEVK 883 (895)
T ss_pred hcCeEEEEE
Confidence 999999998
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-09 Score=130.85 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=68.4
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 156 RNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 156 ~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.++..|||||++ |++||++++.+|+++++||||+|||+..+..+.+.|+.+++ .+.++|+++|++ ++...|
T Consensus 784 ~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~ 860 (880)
T PRK03918 784 RPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAA 860 (880)
T ss_pred CChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhC
Confidence 456789999999 55556678899999999999999999999999999999865 367899999985 477899
Q ss_pred CeEEEEcC
Q psy10223 230 DRTAYLCL 237 (606)
Q Consensus 230 D~v~vL~~ 237 (606)
|++++|..
T Consensus 861 d~~~~l~~ 868 (880)
T PRK03918 861 DYVIRVSL 868 (880)
T ss_pred CeEEEEEe
Confidence 99999984
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.4e-09 Score=122.01 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=58.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH---------HhcCCeEEEEcCCeEEEecC
Q psy10223 176 VKDPVLLLLDEPTVNL-DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV---------LPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 176 ~~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i---------~~~~D~v~vL~~G~~v~~G~ 245 (606)
..+|+++++|||+.+| |+..+..+.+.+++..+ .|.++++++|++. ++ .+.||++++|.+|++...|+
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999875 5788999999875 44 36899999999999876664
Q ss_pred h
Q psy10223 246 T 246 (606)
Q Consensus 246 ~ 246 (606)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-09 Score=113.41 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=107.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..+++++ +.+.+||.++|+|+||+|||||+++|++..+ +..|.|.+.|+.. .+|.|.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~-~~~gvI~~iGerg---------------------~ev~e~ 200 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK-ADINVISLVGERG---------------------REVKDF 200 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC-CCeEEEEeCCCCc---------------------ccHHHH
Confidence 4578775 9999999999999999999999999999876 5667666555321 355555
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLV-------KDPVLLLLDEPTVNL 191 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~-------~~p~llllDEPTsgL 191 (606)
+...+. .-++.+ +.=....+-|.|+|+|+..+.+.+ .++-++++|+||+..
T Consensus 201 ~~~~l~---------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a 259 (432)
T PRK06793 201 IRKELG---------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFA 259 (432)
T ss_pred HHHHhh---------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHH
Confidence 432221 001110 001234678999999999998887 789999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
|+. .++-..+.+... .|.+..+.+|++ .+ ++|.-...+|.+...+.
T Consensus 260 ~A~--reisl~~~e~p~-~G~~~~~~s~l~--~L---~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 260 DAR--RSVDIAVKELPI-GGKTLLMESYMK--KL---LERSGKTQKGSITGIYT 305 (432)
T ss_pred HHH--HHHHHHhcCCCC-CCeeeeeeccch--hH---HHHhccCCCcceEEEEE
Confidence 996 566666666553 377777766642 34 44444457887765543
|
|
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-08 Score=97.85 Aligned_cols=115 Identities=9% Similarity=-0.083 Sum_probs=87.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYIN 468 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~ 468 (606)
-++..+++++++..++..+++++++..+.|++.|++.. +++.+++.+++......+++..+++..++...+ .+.+.
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~-~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~---~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA-HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF---LALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH---HHHHH
Confidence 44567799999999999999999999999999998753 455555555666666667777777776643221 22222
Q ss_pred HHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHHH
Q psy10223 469 IIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLSR 507 (606)
Q Consensus 469 ~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~~ 507 (606)
+.+.+.++|.+.|.+.||.|++|+.|++|++|+.+++..
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~ 171 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQ 171 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHH
Confidence 334556788889999999999999999999999999943
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-09 Score=126.60 Aligned_cols=82 Identities=16% Similarity=0.056 Sum_probs=68.8
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 154 ARRNISELTPSEHRRVVIGTQLVK--------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa~aL~~--------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
.++.+++|||||++|++||++|+. +|+++|+||||++||+.+...+++.|+.+.+ .|++|++++|.+ ...
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHH
Confidence 347789999999999999999996 8999999999999999999999999999975 599999999943 233
Q ss_pred HhcCCeEEEEcC
Q psy10223 226 LPFLDRTAYLCL 237 (606)
Q Consensus 226 ~~~~D~v~vL~~ 237 (606)
-++-.+|.|-..
T Consensus 1021 ~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1021 ERIPVQIKVKKI 1032 (1047)
T ss_pred HhccceEEEEEC
Confidence 444555555544
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=102.62 Aligned_cols=136 Identities=21% Similarity=0.306 Sum_probs=86.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC-EeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-TPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G-~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
|++.+|.||+|+|||||+-.++-... .|.=.+++ .... -...+.|+.-++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va---~G~~~~g~~~~~~---~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA---LGKNLFGGGLKVT---EPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh---cCccccCCccccC---CCceEEEEECCC-----------------------
Confidence 67889999999999999887763211 12111111 1111 134566665332
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC------
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGT----------------QLVKDPVLLLLDEPTV------ 189 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~----------------aL~~~p~llllDEPTs------ 189 (606)
+..+..+|+..+...+++.+..++... .+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~ 127 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVS 127 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCC
Confidence 122334556666666655444333321 145555554443 335799999999 765
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.+|+.....+++.|++++++.|.++++++|..
T Consensus 128 ~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 128 ENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 47999999999999999988899999998865
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-08 Score=93.61 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=53.2
Q ss_pred hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
........|.||-=---+.+. ..+.-+++||||-++|.+.-+.+++..|+++++. |.-+|+.+|.|.
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~s-GaQ~IiATHSPi 189 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADS-GAQIIIATHSPI 189 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhc-CCeEEEEecChh
Confidence 344456778888654444443 4567899999999999999999999999999975 678888889875
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.6e-09 Score=128.44 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=62.2
Q ss_pred ccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEecCCcchH
Q psy10223 156 RNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK----RKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 156 ~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~----~~g~tii~t~h~~~~~i 225 (606)
...+.||||||| |++||++++.+|++++|||||+|||+.+...+.+.|..+.. ..|.++|+++|++ ..+
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~ 1273 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFV 1273 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHH
Confidence 345789999999 99999999999999999999999999999999999988742 2478999999875 456
Q ss_pred HhcC
Q psy10223 226 LPFL 229 (606)
Q Consensus 226 ~~~~ 229 (606)
..+|
T Consensus 1274 ~~~~ 1277 (1311)
T TIGR00606 1274 ELLG 1277 (1311)
T ss_pred HHHh
Confidence 5554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=83.45 Aligned_cols=119 Identities=25% Similarity=0.347 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
++..+.|.||+|+||||+++.|+........+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL------------------DQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH------------------HHHH------------
Confidence 4678999999999999999999988752211334443332211000 0000
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----HHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS-----MLSSY 206 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~-----~L~~l 206 (606)
............+++..+..+.++--.+|+++++||+..-.+......... .....
T Consensus 51 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~ 111 (148)
T smart00382 51 -------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL 111 (148)
T ss_pred -------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHH
Confidence 111122334566777777777777777799999999999999998887664 22333
Q ss_pred HHhCCcEEEEEec
Q psy10223 207 AKRKSRAVLLTME 219 (606)
Q Consensus 207 ~~~~g~tii~t~h 219 (606)
....+..+|++++
T Consensus 112 ~~~~~~~~i~~~~ 124 (148)
T smart00382 112 KSEKNLTVILTTN 124 (148)
T ss_pred HhcCCCEEEEEeC
Confidence 3345677888777
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=97.90 Aligned_cols=58 Identities=21% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 170 VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 170 sIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+|+++|..+|+++++|||. |..+...++ +.+. .|..++.|+|.++ +.+..||++.+..
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~~ 123 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TGHLVMSTLHTNS--AAKTIDRIIDVFP 123 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cCCEEEEEecCCc--HHHHHhHHHhhcC
Confidence 4778889999999999996 666544333 3343 5788999999763 5577899877743
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.8e-08 Score=96.92 Aligned_cols=159 Identities=10% Similarity=0.100 Sum_probs=94.5
Q ss_pred EEee-EEEEeCCeEEEEEcCCCccHHHHHHHHHc-CCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 43 LKDI-SLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 43 L~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g-~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
|+.+ .+=+++|.++.|.|+||||||||...++- ... .. ..+.|+..+. +..+.+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g----------------~~~~y~~~e~------~~~~~~ 69 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QG----------------KKVYVITTEN------TSKSYL 69 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CC----------------CEEEEEEcCC------CHHHHH
Confidence 4443 45699999999999999999999988752 111 11 1234443321 233322
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHH--HcCCchhhcccCCCCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLA--DLALSNVARRNISELTPSEHRRVVIGTQLVK--DPVLLLLDEPTVN---LDP 193 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~--~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~--~p~llllDEPTsg---LD~ 193 (606)
.-..... ..- ++.+. .+.+-+..-..+...|.++++.+..+..++. +|+++++||||+. +|.
T Consensus 70 ~~~~~~g----~~~-------~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~ 138 (234)
T PRK06067 70 KQMESVK----IDI-------SDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEE 138 (234)
T ss_pred HHHHHCC----CCh-------hHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCH
Confidence 2222211 110 01100 0111010011223456788999999999987 9999999999964 555
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcch------HHhcCCeEEEEcC
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD------VLPFLDRTAYLCL 237 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~------i~~~~D~v~vL~~ 237 (606)
....++++.++.+++ .+.|+++++|+.... +..++|-++.|+.
T Consensus 139 ~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 139 DDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 555666666776665 578999998875421 4566677777763
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-09 Score=126.64 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=67.9
Q ss_pred hcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 154 ARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+..+..||||||+|++||++++ .+|+++||||||+|||+.++..+.+.|+.+++ +.++|+++|++. ....|
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~ 1158 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVA 1158 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHh
Confidence 34567899999999999999984 67799999999999999999999999999864 467888899864 46789
Q ss_pred CeEEEEc
Q psy10223 230 DRTAYLC 236 (606)
Q Consensus 230 D~v~vL~ 236 (606)
|+++.+.
T Consensus 1159 d~~~~~~ 1165 (1179)
T TIGR02168 1159 DQLYGVT 1165 (1179)
T ss_pred hhHeeee
Confidence 9997664
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=94.59 Aligned_cols=117 Identities=14% Similarity=0.087 Sum_probs=87.6
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Q psy10223 387 GLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSY 466 (606)
Q Consensus 387 ~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~ 466 (606)
.=.++..+.+++.+..++..+++.+++.++.|++.+++.. .++..++..++......+++..++...++...+......
T Consensus 85 ~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~~-~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~ 163 (236)
T TIGR01247 85 APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKPS-GVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSM 163 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3446889999999999999999999999999988775432 333333334444455566777777766665444343333
Q ss_pred HHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 467 ~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+ ..+++..||.+.|.+.||.|++|+.++||++|+.|++
T Consensus 164 ~-~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~ 201 (236)
T TIGR01247 164 L-MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGA 201 (236)
T ss_pred H-HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHH
Confidence 3 4556788999999999999999999999999999987
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.7e-09 Score=113.23 Aligned_cols=51 Identities=29% Similarity=0.442 Sum_probs=45.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEEECCEeCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EIILDGTPMS 93 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~~~G~~~~ 93 (606)
+.+|++||+++++||+++|+|||||||||||+ +|+.. +.+| +|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 67766 4555 8999999875
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-07 Score=91.87 Aligned_cols=116 Identities=12% Similarity=0.041 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESG--FTAAVVSSY 466 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~--~~aa~~~~~ 466 (606)
.++.++.+++++..++..+++.+++. +++++.|++.....+..++.+.+....+..++..++.+.++. ..++.....
T Consensus 76 ~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 76 LPRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGALTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 47899999999999998877765554 556677876443333333322233333444444444444321 122222333
Q ss_pred HHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 467 INIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 467 ~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+..++++++||.+.|.+.||.|++|+.+++|++|+.+++
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~ 193 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEAL 193 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHH
Confidence 345667788999999999999999999999999999988
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=108.47 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=84.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.++++.+..+++|++++++||||+||||++..|++... ...|. ++++++.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~--------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-MRHGA--------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-HhcCC--------------CeEEEEeCCc---cchhHHHHH
Confidence 35677777788999999999999999999999998753 22221 2567777765 447899999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCC
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHR-RVVIGTQLVKDP-----VLLLLDEPTVN 190 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerq-RvsIa~aL~~~p-----~llllDEPTsg 190 (606)
.+.+.... ++........+......++.+.....+.+...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 98776532 111111122333445556666555666665444443 233444455554 68999999887
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-08 Score=122.73 Aligned_cols=78 Identities=10% Similarity=0.203 Sum_probs=67.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 156 RNISELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
+.+..||||||++++||.+++. +|++++||||++|||+..+..+.++|+++++ +..+|+++|++ .+...||+
T Consensus 1070 ~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~ 1145 (1164)
T TIGR02169 1070 QRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADR 1145 (1164)
T ss_pred CcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhcce
Confidence 3467899999999999999985 7899999999999999999999999999864 46678888886 46799999
Q ss_pred EEEEcC
Q psy10223 232 TAYLCL 237 (606)
Q Consensus 232 v~vL~~ 237 (606)
++.+..
T Consensus 1146 ~~~~~~ 1151 (1164)
T TIGR02169 1146 AIGVTM 1151 (1164)
T ss_pred eEeEEE
Confidence 998864
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-08 Score=115.90 Aligned_cols=78 Identities=23% Similarity=0.283 Sum_probs=65.9
Q ss_pred CCCCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 158 ISELTPSEHR------RVVIGTQLVKD-----P-VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 158 v~~LSgGerq------RvsIa~aL~~~-----p-~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
+..||||||+ |++++++++.+ | +++++||||++||+..+..+.+.|+.+++.+..+||+++|++ ..
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~--~~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECCh--HH
Confidence 5689999999 89999998863 3 679999999999999999999999998753234789989986 44
Q ss_pred HhcCCeEEEEcC
Q psy10223 226 LPFLDRTAYLCL 237 (606)
Q Consensus 226 ~~~~D~v~vL~~ 237 (606)
...+|+++.+.+
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 578999999964
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-07 Score=90.92 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=60.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC--CCCCCCCCHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR--TDLIPSLTVEQT 119 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~--~~~~~~lTV~e~ 119 (606)
..+=+.+.+++|+.++|+||||||||||+++|+|..+ +..|.|.+++..-.....+..++++.|. +...+..|+.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 3444556789999999999999999999999999987 6789999977432111123445555444 345677888888
Q ss_pred HHHHHHc
Q psy10223 120 LYYAAHL 126 (606)
Q Consensus 120 l~f~~~~ 126 (606)
+..+.+.
T Consensus 93 l~~~lR~ 99 (186)
T cd01130 93 LRSALRM 99 (186)
T ss_pred HHHHhcc
Confidence 8776653
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-08 Score=100.01 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.8
Q ss_pred EEee-EEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 43 LKDI-SLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 43 L~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
|+.+ .+=+++|++++|.||||+|||||...++
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHH
Confidence 5553 4569999999999999999999988655
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.5e-06 Score=80.46 Aligned_cols=127 Identities=9% Similarity=-0.090 Sum_probs=80.3
Q ss_pred HhhHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy10223 375 VHRTRYYQEAQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSC---FLFAEYLSVALL 451 (606)
Q Consensus 375 ~~R~i~~re~~~~~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~---~~~~~s~~~~~~ 451 (606)
.++-.++|-+..-. +++.+++++++...-..+++.++..++.++ .|.+-...+...++++.+. ......++..++
T Consensus 16 r~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a 93 (152)
T TIGR01248 16 REIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMAMA 93 (152)
T ss_pred HHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655554 789999999999999999988877777754 3865433322222222111 222222333332
Q ss_pred HHhchhHHHHHHHHHHHHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 452 LVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 452 ~~~~~~~~aa~~~~~~~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
...++. .+...... +.+++...+|.+.|.++||.|++|+.++||++|+.+++
T Consensus 94 ~~~~~~-~~~~~~~~-v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~ 145 (152)
T TIGR01248 94 LRKEGR-FAMEALEL-AQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEAC 145 (152)
T ss_pred HHcCCH-HHHHHHHH-HHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHH
Confidence 223332 22222232 34555666788899999999999999999999999998
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=87.05 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=83.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.+.|+++.+-+++|+++.|.|++|+|||||+..++..........+.|-..+.. ..+.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~----------------------~~~~ 74 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP----------------------VVRT 74 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC----------------------HHHH
Confidence 457899888999999999999999999999988765431011122322221111 1111
Q ss_pred HHHHHHc--cCCCCC---CHHHHHHHHHHHHHHcCCc---hhhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q psy10223 120 LYYAAHL--SIGPQV---SRYVRNARIRQVLADLALS---NVARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTV 189 (606)
Q Consensus 120 l~f~~~~--~~~~~~---~~~~~~~~v~~~l~~lgL~---~~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTs 189 (606)
+...... ..+... ......++++++++.+.-. ...+ .....+ ..+-+..++.++ .+|+++++|..+.
T Consensus 75 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~ 151 (271)
T cd01122 75 ARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYD-SFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSI 151 (271)
T ss_pred HHHHHHHHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEc-CCCccC--HHHHHHHHHHHHhcCCceEEEECCHHH
Confidence 1111000 000000 0001112333444333211 1111 111112 234445555554 3799999999876
Q ss_pred CCCH-------H-HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 190 NLDP-------L-STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 190 gLD~-------~-~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
-.+. . ...++++.|++++++.+.|+++++|-.
T Consensus 152 l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 152 MVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred HhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 4332 1 245677889999988999999987643
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.6e-06 Score=85.22 Aligned_cols=115 Identities=12% Similarity=-0.076 Sum_probs=81.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYIN 468 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~ 468 (606)
-++..+.+|+++.+.-..+++.++...+.+++ |.........++.++++..+...+++..++...++...+...... .
T Consensus 99 v~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~-i 176 (253)
T TIGR01291 99 ITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEWWSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSL-V 176 (253)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-H
Confidence 37889999999998777777666655554433 433333344444444445555567777777777766544444343 3
Q ss_pred HHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 469 IIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 469 ~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+.+++..||.+.|.+.||.|++|+.++||+.|+.|++
T Consensus 177 ~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~ 213 (253)
T TIGR01291 177 ITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDI 213 (253)
T ss_pred HHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHH
Confidence 5667778999999999999999999999999999998
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.4e-07 Score=94.71 Aligned_cols=124 Identities=23% Similarity=0.327 Sum_probs=74.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~ 129 (606)
.+++.+++|.||+||||||+|+.|.+....+..+.|..-..++.. ........+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~-~~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY-VHRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh-hccCccceEEccc---------------------
Confidence 457889999999999999999999886542334555543332210 0000001111100
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
.|.. ..+ -.-+++.+|-.+|+++++||+. |+.++...++. + .
T Consensus 177 ------------------vg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a----a-~ 218 (343)
T TIGR01420 177 ------------------VGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELALTA----A-E 218 (343)
T ss_pred ------------------cCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH----H-H
Confidence 0000 000 1123566788899999999997 88887654442 3 3
Q ss_pred CCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 210 KSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 210 ~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.|..++.|+|.. +.....+|++-|
T Consensus 219 tGh~v~~T~Ha~--~~~~~~~Rl~~~ 242 (343)
T TIGR01420 219 TGHLVFGTLHTN--SAAQTIERIIDV 242 (343)
T ss_pred cCCcEEEEEcCC--CHHHHHHHHHHh
Confidence 588888888864 455667777655
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-07 Score=91.35 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=68.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
+++|.||||||||||.+.|++...+ |.+. ++++|+. +..++..+........ .....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~---~~~~----------------v~~~D~~-~~~~~~~~~~~~~~~~---~~~~~ 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGN---PKVV----------------IISQDSY-YKDLSHEELEERKNNN---YDHPD 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC---CCeE----------------EEEeccc-ccccccccHHHhccCC---CCCCC
Confidence 5799999999999999999987631 2222 2222221 1112222221111100 00111
Q ss_pred HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 135 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
....+...+.++.+...+..+.+....|.|++++..+ .+.+++++++|.|..+.++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1112344566766766666677778889998876655 5788999999999999886
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5e-06 Score=98.71 Aligned_cols=55 Identities=25% Similarity=0.295 Sum_probs=46.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 171 IGTQLVKDPVLLLLDEPTVNL-DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 171 Ia~aL~~~p~llllDEPTsgL-D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+ .|.++++++|++. ++.+
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~-d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLS-DAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHhh
Confidence 677888999999999999999 79999999999999876 4778888888764 4443
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4e-07 Score=97.36 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC
Q psy10223 160 ELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD 230 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D 230 (606)
-+|+||+|++.+|..|+ .+|+++++|||+++||...+..+.+.|... ..++|.+++ ..+.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~-----~~~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTE-----APPGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCC-----CCCCCc
Confidence 58999999999999999 899999999999999999999999888643 134443333 456899
Q ss_pred eEEEEcCCeEEEec
Q psy10223 231 RTAYLCLGDLIYAG 244 (606)
Q Consensus 231 ~v~vL~~G~~v~~G 244 (606)
+++.+.+|++.-..
T Consensus 334 ~~~~~~~~~~~~~~ 347 (349)
T PRK14079 334 LTLRIEAGVFTPEA 347 (349)
T ss_pred eEEEEeccEecCCC
Confidence 99999999875433
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-06 Score=94.06 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=102.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----------ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----------QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~ 107 (606)
...+++++ +.+.+||.++|+|+||+|||||+++|++..+ +..|.+...|..-.+ ..+++.+.++.+.
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~-~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~ 227 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE-ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS 227 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC-CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC
Confidence 35789999 9999999999999999999999999999876 566766665543321 1123334444443
Q ss_pred CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch--hhcccCCCCCH-HHHHHHHHHHHHhhCCCEEEE
Q psy10223 108 TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN--VARRNISELTP-SEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~LSg-GerqRvsIa~aL~~~p~llll 184 (606)
+. ++.+-..- +. ..-.+.+.+...|-.- ..| +|+- -|-+| .|+ +.+
T Consensus 228 d~-----~p~~r~~~-~~-----------~a~t~AE~frd~G~~Vll~~D----slTr~A~A~R-Eis---------l~~ 276 (440)
T TIGR01026 228 DQ-----SPLLRLKG-AY-----------VATAIAEYFRDQGKDVLLLMD----SVTRFAMAQR-EIG---------LAA 276 (440)
T ss_pred CC-----CHHHHHHH-HH-----------HHHHHHHHHHHCCCCEEEEEe----ChHHHHHHHH-HHH---------Hhc
Confidence 32 11111110 00 0011112222222210 011 1110 11111 111 223
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhCCc-------EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 185 DEP--TVNLDPLSTYLIVSMLSSYAKRKSR-------AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 185 DEP--TsgLD~~~~~~i~~~L~~l~~~~g~-------tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.|| +.|+|+.....+.+++.+.... +. ||++..|+- ....+|++.-+.+|+++.++..++.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~-~~GSIT~i~tVl~~~~d~---~dpi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGAS-GKGSITAFYTVLVEGDDM---NEPIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccC-CCCeeeEEEEEEccCcCC---CcchhhhhccccceEEEEecchhhC
Confidence 564 5599999999999999987643 44 455554532 2457899999999999999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-07 Score=106.09 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=99.3
Q ss_pred EEee-EEEEeCCeEEEEEcCCCccHHHHHHHH--HcCCCCCCeeEEEECCEeCCccccc---CeEEEEcCCCCCCCCCCH
Q psy10223 43 LKDI-SLEVRPGEVLAVLGSKGSGKRALLEVI--SRRSSGTTRGEIILDGTPMSPQLFQ---TTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 43 L~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L--~g~~~~~~~G~I~~~G~~~~~~~~~---~~i~yv~q~~~~~~~lTV 116 (606)
|+.+ .+=+.+|..++|.|+||||||||..-+ .|..+ .-+.-+.+..... ++.++ +..|+..++..--.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g---- 83 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEG---- 83 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcC----
Confidence 5554 567899999999999999999998865 34333 1122333332211 11111 12232222100000
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIG--TQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa--~aL~~~p~llllDEPTsgLD~~ 194 (606)
++.+ . .... ....+.+++.+++.+..++..+.+|+|++|||.|+ .++...|+.. ..
T Consensus 84 --~l~~------~-~~~~---~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~ 141 (484)
T TIGR02655 84 --KLFI------L-DASP---DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SV 141 (484)
T ss_pred --ceEE------E-ecCc---hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HH
Confidence 0000 0 0000 00112244566777778888889999999999999 6666665443 46
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcch-------H-HhcCCeEEEEc
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSD-------V-LPFLDRTAYLC 236 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~-------i-~~~~D~v~vL~ 236 (606)
.+.++.++++.+++ .|.|+|+++|+.... + ..++|.|+.|+
T Consensus 142 ~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 142 VRREIFRLVARLKQ-IGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 77888888888865 689999999975321 2 55889999997
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.1e-07 Score=98.99 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=109.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe---eEEEECCEeCCc---c------cccCeEEEEcC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP---Q------LFQTTCGYVNH 106 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~---G~I~~~G~~~~~---~------~~~~~i~yv~q 106 (606)
...+|+++ +.+.+||.++|+|+||+|||||+++|+|..+ +.. |.|-.+|.++.. + ..|..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35699999 9999999999999999999999999999876 333 445455544421 1 12456899999
Q ss_pred CCCCCCCCCHHHHHHHHHHccCCCCCCH---HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTDLIPSLTVEQTLYYAAHLSIGPQVSR---YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~~~~~lTV~e~l~f~~~~~~~~~~~~---~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
++..+..+++.+++.+.+......+..- -..-.|..++..++++ .
T Consensus 220 d~s~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl--------------------------------~ 267 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL--------------------------------S 267 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH--------------------------------h
Confidence 9999999999999987776421110000 0000011111111111 1
Q ss_pred EeCC--CCCCCHHHHHHHHHHHHHHHHh---CCcEEEEEecCCcchHH-hcCCeEEEEcCCeEEEe
Q psy10223 184 LDEP--TVNLDPLSTYLIVSMLSSYAKR---KSRAVLLTMEKPRSDVL-PFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 184 lDEP--TsgLD~~~~~~i~~~L~~l~~~---~g~tii~t~h~~~~~i~-~~~D~v~vL~~G~~v~~ 243 (606)
+.|| +.|-.+..-..+-+++.+..+. +..|.+-+..-+.+++- ..+|.+.-+-||+++-.
T Consensus 268 ~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 268 LGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred cCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 2233 3477777777777777765322 23466666666655543 35688888889999875
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.6e-07 Score=96.76 Aligned_cols=58 Identities=22% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 160 ELTPSEHRRVVIGTQLVK---------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 160 ~LSgGerqRvsIa~aL~~---------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |..+++|+|++
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 589999999999999999 99999999999999999999999999753 56888888865
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-06 Score=103.10 Aligned_cols=139 Identities=16% Similarity=0.221 Sum_probs=81.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..+-+|+++. ..+.++.|.|||++||||+||.++-..--..-|.- .|.. ...++++. ..|.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~~----VPa~----~a~i~~~d---~I~t------- 655 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGSF----VPAE----SARIGIVD---RIFT------- 655 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCCc----eecc----ceEecccC---eeee-------
Confidence 3567788887 67889999999999999999987632100000110 0100 01111111 1110
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL--VKDPVLLLLDEP---TVNLDPL 194 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL--~~~p~llllDEP---TsgLD~~ 194 (606)
++|- .|...+++|.=+.....++..| +++++++++||| |+.+|..
T Consensus 656 ---------------------------riga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~ 705 (854)
T PRK05399 656 ---------------------------RIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL 705 (854)
T ss_pred ---------------------------ccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH
Confidence 1111 1223345565555555555554 458999999999 8888844
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
. ....+++.+.+..+.++++++|. .++.+++++
T Consensus 706 a--ia~aile~l~~~~~~~~l~aTH~--~el~~l~~~ 738 (854)
T PRK05399 706 S--IAWAVAEYLHDKIGAKTLFATHY--HELTELEEK 738 (854)
T ss_pred H--HHHHHHHHHHhcCCceEEEEech--HHHHHHhhh
Confidence 4 34455666665446778888886 467777765
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-06 Score=102.46 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=69.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 156 RNISELTPSEHRRVVIGTQLV------KD--PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~------~~--p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
+.+..|||||+-.++||.+|+ .+ -+++++||||..||+.+...++++|..+... +.+|+|++|++ ++.+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~-~~qiiIISH~e--el~e 887 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD-GRQIIIISHVE--ELKE 887 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEeChH--HHHH
Confidence 467899999999888877665 45 6999999999999999999999999999764 88999999974 7889
Q ss_pred cCCeEEEEcCC
Q psy10223 228 FLDRTAYLCLG 238 (606)
Q Consensus 228 ~~D~v~vL~~G 238 (606)
.+|.++.+...
T Consensus 888 ~~~~~i~V~k~ 898 (908)
T COG0419 888 RADVRIRVKKD 898 (908)
T ss_pred hCCeEEEEEec
Confidence 99999998763
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.6e-05 Score=90.29 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=40.8
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 174 QLVKDPVLLLLDEPTVNLD-PLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 174 aL~~~p~llllDEPTsgLD-~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
.+..+|.++++|||...|| +..+..+.+.++...+ .|..+++++|.+.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~ 686 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVE 686 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence 3557899999999999999 8889999999999865 5778888888764
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=92.69 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=105.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC---EeCCc---cc-----ccCeEEEE---
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP---QL-----FQTTCGYV--- 104 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G---~~~~~---~~-----~~~~i~yv--- 104 (606)
...+++++ +.+.+||.++|+|+||+|||||+++|++..+....|.|.+.| .++.. +. .++.+..+
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 35689988 999999999999999999999999999987423447777745 44321 11 12233444
Q ss_pred cCCCC--CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-----hhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 105 NHRTD--LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-----NVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 105 ~q~~~--~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
+|++. +.|.+ +..++.-..+.+........+...++.+++++++|. .....+++.+|
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS--------------- 293 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS--------------- 293 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh---------------
Confidence 77653 44544 566655544433211123345667888999999884 33444455444
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HhCCcEEEEEecCCcchHH-hcCCeEEEEcCCeEEEecCh
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYA--KRKSRAVLLTMEKPRSDVL-PFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~--~~~g~tii~t~h~~~~~i~-~~~D~v~vL~~G~~v~~G~~ 246 (606)
.+-+++.+.. +.+..|.+-+..-+.+++- ...|.+.-+-||+++-+-..
T Consensus 294 --------------------~l~~llERag~~~~GSITai~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~l 345 (442)
T PRK06315 294 --------------------TLPKLLERSGASDKGTITAFYTVLVAGDDMNEPVADEVKSILDGHIVLSNAL 345 (442)
T ss_pred --------------------HhHHHHHHhcCCCCcceeeeEEEEecCCCCCcccHHHhhhhcceEEEEeccH
Confidence 2223332221 2233566666555554443 35688888889999886543
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-05 Score=77.35 Aligned_cols=152 Identities=20% Similarity=0.293 Sum_probs=78.4
Q ss_pred EEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc--------CCCCCCee
Q psy10223 13 YLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR--------RSSGTTRG 83 (606)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g--------~~~~~~~G 83 (606)
.+++ +.+|+.+...- .+++.+-+|+.+.-+...++.|.|||.+||||+||.++- ..-+..+.
T Consensus 11 ~l~i~~~~HPll~~~~---------~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~ 81 (235)
T PF00488_consen 11 SLKIKEGRHPLLEEKL---------ENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESA 81 (235)
T ss_dssp EEEEEEE--TTHHHHT---------TTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEE
T ss_pred CEEEEeccCCEEeccc---------cCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccc
Confidence 7777 88887653221 122346677766544446999999999999999998752 21111222
Q ss_pred EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCH
Q psy10223 84 EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTP 163 (606)
Q Consensus 84 ~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSg 163 (606)
++.+ +.+-...+..++.+...++- |..+ -+++..+++
T Consensus 82 ~i~~---------~d~I~t~~~~~d~~~~~~S~-----F~~E------------~~~~~~il~----------------- 118 (235)
T PF00488_consen 82 EIPI---------FDRIFTRIGDDDSIESGLST-----FMAE------------MKRLSSILR----------------- 118 (235)
T ss_dssp EEE-----------SEEEEEES---SSTTSSSH-----HHHH------------HHHHHHHHH-----------------
T ss_pred cccc---------ccEEEeeccccccccccccc-----HHHh------------HHHHHhhhh-----------------
Confidence 2221 11111222222322222111 1111 112223332
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEEecCCcchHHhcC
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS-YAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~-l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+.+.+++++||+.+|=++.....+...+-+ +.++.+..+++++|.. ++.+..
T Consensus 119 -----------~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~--~l~~~~ 172 (235)
T PF00488_consen 119 -----------NATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFH--ELAELL 172 (235)
T ss_dssp -----------H--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-G--GGGGHH
T ss_pred -----------hcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccc--hhHHHh
Confidence 2346789999999999999998886655544 4443467778888864 444443
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.7e-07 Score=85.61 Aligned_cols=66 Identities=26% Similarity=0.353 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-ccc-CeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQ-TTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~-~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
+||+++|+|+||||||||+++|++++. + +.++|.++... ..+ ...++.+|+...++.+++.+++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 699999999999999999999999875 3 46788765421 111 123455555444455555555443
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=105.97 Aligned_cols=62 Identities=18% Similarity=0.283 Sum_probs=52.8
Q ss_pred cccCCCCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 155 RRNISELTPSEHRRVV----IGTQ--------LVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 155 ~~~v~~LSgGerqRvs----Ia~a--------L~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
++.+++||||||||++ +|.+ +..+|++++|||||+|||+.++..++++++++ +.++|++++.
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~ 1315 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSER 1315 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccc
Confidence 4457899999999996 5644 55899999999999999999999999999876 5778888764
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.5e-06 Score=91.93 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=99.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC---EeCCc-------ccccCeEEEEcCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSP-------QLFQTTCGYVNHRTD 109 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G---~~~~~-------~~~~~~i~yv~q~~~ 109 (606)
..+++.++ .+.+||.++|+||||+||||||++|+++.+ ++.|.|.+.| .++.. ...++.+++++|.+.
T Consensus 153 i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 153 VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 56888886 899999999999999999999999999877 6789888864 44321 113467999999875
Q ss_pred CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCH-HHHHH-HHHHHHHhhCCCEEEEeCC
Q psy10223 110 LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTP-SEHRR-VVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 110 ~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSg-GerqR-vsIa~aL~~~p~llllDEP 187 (606)
- ..+-+. ++. ..-.+.|.+..-|-.-. -...+|+- -+-+| +++ .+.||
T Consensus 231 ~-----~~~r~~-~~~-----------~a~~iAEyfrd~G~~Vl--l~~DslTr~A~A~rEisl-----------~~ge~ 280 (450)
T PRK06002 231 S-----PMMRRL-APL-----------TATAIAEYFRDRGENVL--LIVDSVTRFAHAAREVAL-----------AAGEP 280 (450)
T ss_pred C-----HHHHHH-HHH-----------HHHHHHHHHHHcCCCEE--EeccchHHHHHHHHHHHH-----------hcCCC
Confidence 2 111111 000 00011111211121100 00011110 01111 111 12343
Q ss_pred --CCCCCHHHHHHHHHHHHHHHHh----CCcEEEEEecCCcchHHh-cCCeEEEEcCCeEEEe
Q psy10223 188 --TVNLDPLSTYLIVSMLSSYAKR----KSRAVLLTMEKPRSDVLP-FLDRTAYLCLGDLIYA 243 (606)
Q Consensus 188 --TsgLD~~~~~~i~~~L~~l~~~----~g~tii~t~h~~~~~i~~-~~D~v~vL~~G~~v~~ 243 (606)
+.|--+.--..+-+++.+..+. +..|.+-|..-+.+++-+ .+|.+.-+-||+++-+
T Consensus 281 P~~~gyp~~vf~~l~~l~ERag~~~~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLs 343 (450)
T PRK06002 281 PVARGYPPSVFSELPRLLERAGPGAEGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLD 343 (450)
T ss_pred CccccCCccHHHHhhHHHHHhccCCCCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEc
Confidence 3467776666777777766531 235667776666666533 6788888888998874
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=88.54 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=46.7
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHHhCCcEEEEEecCCcc-------hHHhcCCeEEEEcCCe
Q psy10223 177 KDPVLLLLDEPTVN----LD-----PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS-------DVLPFLDRTAYLCLGD 239 (606)
Q Consensus 177 ~~p~llllDEPTsg----LD-----~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~-------~i~~~~D~v~vL~~G~ 239 (606)
.+|++++.|.-++= ++ .....++...|.+++++.|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987641 11 2345567777888888899999999885432 1577899999998755
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.16 E-value=5.7e-06 Score=101.64 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=89.9
Q ss_pred eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy10223 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAH 125 (606)
Q Consensus 46 vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~ 125 (606)
+++..+++++++|+|++|+|||||++.+++.......|.+.+++..+... +. .+-.++... .++...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~~-- 266 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKLH-- 266 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccc--hh--hcccccccc-------cchhHH--
Confidence 45677889999999999999999999998776544578888865322210 00 000000000 000000
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 126 LSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
..++.+.++++..++ .+..+ ++.|+| |..++-+++||+- |... .++.|+.
T Consensus 267 ----------l~~~~l~~il~~~~~------~~~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l~~L~~ 316 (1153)
T PLN03210 267 ----------LQRAFLSEILDKKDI------KIYHL-GAMEER------LKHRKVLIFIDDL----DDQD---VLDALAG 316 (1153)
T ss_pred ----------HHHHHHHHHhCCCCc------ccCCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HHHHHHh
Confidence 011223344433333 12222 566666 3466678888983 4433 3444443
Q ss_pred HHH--hCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHHHHHHHcCC
Q psy10223 206 YAK--RKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258 (606)
Q Consensus 206 l~~--~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~ 258 (606)
..+ ..|.+||+|+|+.. .+... +|+++.+.. -+.+++.+.|....|
T Consensus 317 ~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 317 QTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred hCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 322 24789999998643 23222 577655531 244678888876544
|
syringae 6; Provisional |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.7e-05 Score=83.86 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=44.6
Q ss_pred hCCCEEEEeCCC----CCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEecCCcc-------hHHhcCCeEEEEcCC
Q psy10223 177 KDPVLLLLDEPT----VNLD-----PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS-------DVLPFLDRTAYLCLG 238 (606)
Q Consensus 177 ~~p~llllDEPT----sgLD-----~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~-------~i~~~~D~v~vL~~G 238 (606)
.+|+++++|+-. ..+| .....++...|++++++.+.+++++.|-..+ .+.+++|-|+.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 489999999963 3333 2334566777888888889999998774321 267889999988754
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.5e-06 Score=66.17 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=28.5
Q ss_pred EEeeEEEEeC-CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 43 LKDISLEVRP-GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 43 L~~vs~~v~~-Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++.++.+.+ |++++|.|||||||||||++|.-.+-
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 3445666775 57999999999999999999875443
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.6e-05 Score=73.84 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCc-hhhcccCCCCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 140 RIRQVLADLALS-NVARRNISELTPSEHRRVV--IGTQLVK-DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 140 ~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvs--Ia~aL~~-~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
++.+.++..++. -....++..+|+||++++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 345566666654 2344567789999999987 5555543 33443 99999999999999999987653
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=92.29 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCC-------CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSG-------TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
..+.++|+||||+|||||+++|.+..+. ...+-+.++|..+... .+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d-~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD-PRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC-HHH----------------H-hHHhcC-
Confidence 4567999999999999999999886531 0123355555433100 000 0 011111
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 204 (606)
.... ...+..++.++..|+.+..+..+..+||| +|++|| +..||+..+..+.+.|+
T Consensus 235 ------~~~~-~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 235 ------SVHD-PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred ------CccH-HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHh
Confidence 0111 11234556688889988888889999999 999999 79999999999999997
Q ss_pred H
Q psy10223 205 S 205 (606)
Q Consensus 205 ~ 205 (606)
+
T Consensus 291 ~ 291 (615)
T TIGR02903 291 D 291 (615)
T ss_pred h
Confidence 5
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.1e-06 Score=69.70 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=39.3
Q ss_pred cccCCCCCHHHH-HHHHHHHH------Hhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 155 RRNISELTPSEH-RRVVIGTQ------LVK------DPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 155 ~~~v~~LSgGer-qRvsIa~a------L~~------~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
.+..+++||||| ..+.++.+ +-. .|++++||||+++||+..+..++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 456789999999 44444433 223 3799999999999999999999999874
|
|
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00021 Score=72.56 Aligned_cols=115 Identities=22% Similarity=0.204 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q psy10223 392 PLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYINIIF 471 (606)
Q Consensus 392 ~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~~~~~ 471 (606)
..+++++.+...-...+...+...++.+..|......+..+...+.+......+++..+++...+....+...+.+...+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 210 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILP 210 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45566666666666555555555555556663333333333333333333344444433322333333343344344566
Q ss_pred HHhheeeecCCCChhhHHHHHhhhcHHHHHHHHHH
Q psy10223 472 LVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFLS 506 (606)
Q Consensus 472 ~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal~ 506 (606)
+..++|.+.|.+.+|.|++|+.+++|..|+.+++-
T Consensus 211 ~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~ 245 (286)
T COG0842 211 LGFLSGVFFPLELLPAWLQGISYINPLTYAIDALR 245 (286)
T ss_pred HHHHccccCchhhhHHHHHHHHHHccHHHHHHHHH
Confidence 77889999999999999999999999999999994
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=71.43 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEecCC
Q psy10223 166 HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK----RKSRAVLLTMEKP 221 (606)
Q Consensus 166 rqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~----~~g~tii~t~h~~ 221 (606)
++..........++.++++||.-.. +......+.+.+..... ..+..+|++++.+
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 4555556667788999999998765 55666777888877643 2467777777654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=73.06 Aligned_cols=116 Identities=10% Similarity=0.012 Sum_probs=71.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q psy10223 388 LYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467 (606)
Q Consensus 388 ~Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~ 467 (606)
=-++..+.+++++...-..+++.++..++.+...|.+.. ........+++........+..++.......+.+.....+
T Consensus 100 p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~-~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 100 PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH-HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 357778888999887766666655555554444465432 2222222222212212222444444444433444433333
Q ss_pred HHHHHHhheeeecCCCChhhHHHHHhhhcHHHHHHHHH
Q psy10223 468 NIIFLVLGSGYLRSFRSMAEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 468 ~~~~~~l~~Gf~i~~~~mp~w~~Wi~yisp~~Ya~eal 505 (606)
+.+++..||.+.|.+.+|+|++|+.++||+.|..|++
T Consensus 179 -~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~ 215 (257)
T PRK15066 179 -LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAF 215 (257)
T ss_pred -HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHH
Confidence 4566677999999999999999999999999999998
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.7e-05 Score=89.57 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=46.9
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCcc--------hHHhcCCeEEEEcC
Q psy10223 175 LVKDPVLLLLDEPTVNLD-PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS--------DVLPFLDRTAYLCL 237 (606)
Q Consensus 175 L~~~p~llllDEPTsgLD-~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~--------~i~~~~D~v~vL~~ 237 (606)
+-.+|+++++|||+.+|| +..+..+.+.++...+ .|.++++++|.+.+ .+.+.++-.++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 446899999999999999 7888999999999875 57788888887642 23445555555544
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.98 E-value=9.8e-06 Score=75.44 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10223 139 ARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQL-----VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206 (606)
Q Consensus 139 ~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL-----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 206 (606)
.++.+.+...+.. -....+...++++++++....... ...++++ |++++|.....++.+.|.++
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445566665543 123445667899998887666553 2345555 99999999999999888764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00025 Score=72.23 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=77.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Q psy10223 389 YSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTS-TDLFQFSLMLWSCFLFAEYLSVALLLVVESGFTAAVVSSYI 467 (606)
Q Consensus 389 Y~~~a~~la~~l~dlP~~~~~~~if~~i~Yfm~gl~~~-~~~f~~~l~~~~~~~~~~s~~~~~~~~~~~~~~aa~~~~~~ 467 (606)
.++..+.+++++...-..+++.++..++.++. |.+.. .+.......+++...+..+++..++...++...+......+
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778899999999887777766655544432 54322 23333333334444555667777777766554444433333
Q ss_pred HHHHHHhheeeecCCCCh---hhHHHHHhhhcHHHHHHHHH
Q psy10223 468 NIIFLVLGSGYLRSFRSM---AEWLVYMSYGTQARYVGAFL 505 (606)
Q Consensus 468 ~~~~~~l~~Gf~i~~~~m---p~w~~Wi~yisp~~Ya~eal 505 (606)
+.+++..||.+.|.+.+ |.|++|+.++||+.|..|++
T Consensus 178 -~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~ 217 (253)
T TIGR03861 178 -IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELV 217 (253)
T ss_pred -HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHH
Confidence 45666779999888665 89999999999999999988
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3e-06 Score=83.85 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=26.1
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|++++|.||||||||||++.|+++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999999865
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-05 Score=86.45 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=53.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCe---eEEEECCEeCCc---c----cccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTR---GEIILDGTPMSP---Q----LFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~---G~I~~~G~~~~~---~----~~~~~i~yv~q~~ 108 (606)
...+++++ +.+.+||.++|+|+||+|||||+++|++... ++. |.|-.+|.++.. + ..++++++|....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~-~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE-ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC-CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 9999999999999999999999999999876 444 888888887642 1 1235667765544
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-05 Score=85.85 Aligned_cols=70 Identities=20% Similarity=0.234 Sum_probs=54.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~ 113 (606)
++.+.-.+++|++++|+|+||+|||||++.|+|... +..|+|..++..-.....++.+.+++|...++.+
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~-~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt 254 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV-QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT 254 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc-cceeeEEECCCCCcchhhhccEEEecCCCeecCC
Confidence 444555677999999999999999999999999887 6889999987433222335678899988776654
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.2e-05 Score=81.00 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=47.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeE----EEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGE----IILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~----I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
.+..+++|.||||||||||.+.|++.++ +..|. |.+++..... ..+...+++.+.+ ..+.+++.+.+.+...+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~~~v~i~~D~~~~~~-~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGELPAIQVPMDGFHLDN-AVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCCceEEEecccccCCH-HHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999987 56676 5555533221 1223346665533 33556666665554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 606 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-15 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-13 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-13 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-13 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 8e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 9e-12 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-11 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-11 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-10 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-10 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-09 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 6e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-08 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-08 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-08 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-08 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 5e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 5e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-07 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 4e-05 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 6e-05 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 8e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 3e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 6e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 6e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 17/221 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG-----TPMSPQL 96
ILK IS ++ G+ + G G+GK LL +++ T G + L G S +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAET 94
Query: 97 FQTTCGYVN--HRTDLIPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNV 153
+ G+V+ V + A SIG Q Q+L + +S
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK 154
Query: 154 ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR-KSR 212
A++ I L+ E +RV+I L+ P +L+LDEP LD ++ ++S+L S + +
Sbjct: 155 AQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTL 214
Query: 213 AVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250
A++ +E ++ + L G I G +L
Sbjct: 215 AMIYVTHFIE----EITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 8e-23
Identities = 38/203 (18%), Positives = 81/203 (39%), Gaps = 22/203 (10%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLFQ 98
L+ I++ + G V+ G G GK + + + +GEII +G P++ +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK--VK 77
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
++ + ++VE L A L I L + + ++ ++ +
Sbjct: 78 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK-L 131
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218
EL+ RRV + + L+ + + +LD+P V +D S + ++ + K K ++ +
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS- 190
Query: 219 EKPRSDVLPFLDRTAYLCLGDLI 241
+ L + D L
Sbjct: 191 ----REELSYCDVNENLHKYSTK 209
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 1e-20
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 18/192 (9%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIIL 87
+ G L K IS E+ GE+ ++G G+GK R + +I + G + +
Sbjct: 23 KRIGKK-EIL--KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTV 74
Query: 88 DGTPMS--PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
G + P + Y+ ++ + L + A S + +
Sbjct: 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERAT 131
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L + +S + R+++I L+ +P L +LDEPT LD L+ + +L
Sbjct: 132 EIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 191
Query: 206 YAKRKSRAVLLT 217
++ +L++
Sbjct: 192 ASQEG-LTILVS 202
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 8e-19
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 20/168 (11%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---M 92
++ + L +S EVR GE+L ++G G+GK LL ++ +S +G I G P
Sbjct: 9 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAW 66
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
S Y++ + + V L H R + V LAL +
Sbjct: 67 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH----D----KTRTELLNDVAGALALDD 118
Query: 153 VARRNISELTPSEHRRVVI-------GTQLVKDPVLLLLDEPTVNLDP 193
R+ ++L+ E +RV + Q LLLLDEP +LD
Sbjct: 119 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 72/283 (25%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSP----- 94
LK I++ ++ GEV A+LG G GK L + + G + G I+ D P+
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN----GILKPSSGRILFDNKPIDYSRKGI 79
Query: 95 ----------------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRY 135
QLF + V Q + + G +
Sbjct: 80 MKLRESIGIVFQDPDNQLFSAS---------------VYQDVSF------GAVNMKLPED 118
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195
R+ L + ++ + L+ + +RV I LV +P +L+LDEPT LDP+
Sbjct: 119 EIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG 178
Query: 196 TYLIVSMLSSYAKRKSRAVLLT---MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML-- 250
I+ +L K +++ ++ V + D + G +I G + +
Sbjct: 179 VSEIMKLLVEMQKELGITIIIATHDID----IVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 251 -EYFRSIGFPCPELENPLMYYLCLSTVDRRSRERFIESNNQIV 292
E R + L P + +L +E+ +++
Sbjct: 235 KEVIRKVN-----LRLPRIGHLM-----EILKEKDGFVFDELD 267
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 3e-18
Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 16/208 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+ + ++ ++ G++LAVLG G GK LL+++ +G+I + +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIEVYQ----------SI 68
Query: 102 GYVNHRTDLIPSLTVEQTLYY--AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNIS 159
G+V + +V + + H++ + + Q L L L+++A+R +
Sbjct: 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QVAMQALDYLNLTHLAKREFT 127
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
L+ + + ++I + + L+LLDEPT LD + +++S+L A+ ++ V+ T
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+P V+ ++T L G TR
Sbjct: 188 QPNQ-VVAIANKTLLLN-KQNFKFGETR 213
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 1e-17
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 30/188 (15%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIIL 87
+V + ILK ISL V+ GE ++++G+ GSGK LL ++ G T G++ L
Sbjct: 12 KVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-----GLLDAPTEGKVFL 63
Query: 88 DGTPMSP-------QLFQTTCGYVNHRTDLIPSLT----VEQTLYYAAHLSIGPQVSRYV 136
+G + L G+V LIP LT V + +
Sbjct: 64 EGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-------KPKKE 116
Query: 137 RNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R +L++L L + R EL+ E +RV I L +P+LL DEPT NLD +T
Sbjct: 117 AKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176
Query: 197 YLIVSMLS 204
++ +
Sbjct: 177 KRVMDIFL 184
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-17
Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 39/220 (17%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TP 91
G L++I+LEV GE + +LG GSGK LL IS G I ++G
Sbjct: 13 GKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP--YSGNIFINGMEVRK 69
Query: 92 MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI------GPQVSRYVRNARIRQVL 145
+ + Y + + Y +++ ++ + ++L
Sbjct: 70 IRNYI-----RYST---------NLPE--AYEIGVTVNDIVYLYEELKG-LDRDLFLEML 112
Query: 146 ADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L + RR + +L+ + V L P ++ LDEP N+D ++I +
Sbjct: 113 KALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK 172
Query: 205 SYAKRKSRAVLLT--MEKPRSDVLPFLDRTAYLCLGDLIY 242
Y K +L+T ++ + + + AY +G+ +
Sbjct: 173 EYGK---EGILVTHELD----MLNLYKEYKAYFLVGNRLQ 205
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 55/258 (21%), Positives = 102/258 (39%), Gaps = 33/258 (12%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDGTPMSPQLFQT 99
L+++SL + GE L V G+ GSGK LL++++ G T G+++ DG +
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVA----GLIEPTSGDVLYDGERKKGYEIRR 78
Query: 100 TCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQ---VSRYVRNARIRQVLADLALS--N 152
G + V + + + R +++ + + L +
Sbjct: 79 NIGIAFQYPEDQFF-AERVFDEVAF------AVKNFYPDRDPVP-LVKKAMEFVGLDFDS 130
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
R L+ E RRV I + +V +P +L+LDEP V LD ++ ++ +
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 213 AVLLT--MEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYY 270
+L++ +E V+ +DR L G ++ G E+ + +M
Sbjct: 191 VILISHDIE----TVINHVDRVVVLEKGKKVFDGTRM---EFLEKYDPRFFTSKMLVMRR 243
Query: 271 LCLSTVDR--RSRERFIE 286
L L D S + +E
Sbjct: 244 LVLKGEDPFSMSDDELLE 261
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 5e-16
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 34/174 (19%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
R + N L ++SL+V GE +LG G+GK LE+I +G G I+L
Sbjct: 8 SRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELI----AGFHVPDSGRILL 59
Query: 88 DGTPMS---PQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
DG ++ P+ ++Q Y L P + V++ L + G ++ +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQN---YS-----LFPHMNVKKNLEF------GMRMKKIKDP 105
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ DL + ++ RN L+ E +RV + LV +P +LLLDEP LD
Sbjct: 106 KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 6e-16
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 20/175 (11%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-MSPQLFQTT 100
L+ E+R GEV+ ++G G GK +++++ T G++ D T PQ
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDLTVAYKPQ----- 424
Query: 101 CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE 160
TV + L +++ N ++L L + ++ RN+ +
Sbjct: 425 ------YIKAEYEGTVYELL----SKIDSSKLNS---NFYKTELLKPLGIIDLYDRNVED 471
Query: 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
L+ E +RV I L++D + LLDEP+ LD + + ++ + L
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 30/194 (15%), Positives = 70/194 (36%), Gaps = 35/194 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-----SSGTTRGEIILDGTPMSP-- 94
+ V+ G V+ ++G G+GK +++++ + + ++ +
Sbjct: 106 FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 95 ------------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIR 142
+ + DL+P + + + + +
Sbjct: 166 NYFERLKNGEIRPVVKP------QYVDLLPKAVKGK---------VRELLKKVDEVGKFE 210
Query: 143 QVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
+V+ +L L NV R + +L+ E +RV I L++ DEP+ LD + +
Sbjct: 211 EVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270
Query: 203 LSSYAKRKSRAVLL 216
+ + +AVL+
Sbjct: 271 I-RRLANEGKAVLV 283
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-15
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT----TRGEIILDGTPMSP--- 94
LK+++L ++ GE ++++G GSGK +L +I G T GE+ +D +
Sbjct: 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-----GCLDKPTEGEVYIDNIKTNDLDD 74
Query: 95 ----QLFQTTCGYVNHRTDLIPSLT----VEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
++ + G+V + +LIP LT VE L + +S R R + L
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIF----KYRGAMSGEERRKRALECLK 130
Query: 147 DLALSNVARRNISELTPSE-----HRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201
L + P++ +RV I L +P ++L D+PT LD + I+
Sbjct: 131 MAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 202 ML 203
+L
Sbjct: 187 LL 188
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 5e-15
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 22/177 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQ-LFQ 98
L + E + GE++ +LG G GK ++ + G + + +S PQ +F
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEKQILSYKPQRIFP 341
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
TV+Q L A+ ++ + +V L L + N+
Sbjct: 342 N------------YDGTVQQYLENASKDALST------SSWFFEEVTKRLNLHRLLESNV 383
Query: 159 SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++L+ E +++ I L K+ L +LD+P+ LD Y++ + + +
Sbjct: 384 NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTF 440
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 30/186 (16%), Positives = 71/186 (38%), Gaps = 27/186 (14%)
Query: 43 LKDISLEV-RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----LDGTPMSPQL 96
K L + +L VLG G GK +L++++ GEII + ++
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILA--------GEIIPNFGDPNSKVGKDEV 65
Query: 97 FQTTCG-----YVNH-RTDLIPSLTVEQ---TLYYAAHLSIGPQVSRYVRNARIRQVLAD 147
+ G Y ++ + + Q ++ +++ + +V
Sbjct: 66 LKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKEL 125
Query: 148 LALSNVARRNISELTPS--EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
L ++N+ ++ + L S +R+++ L+++ + + D+P+ LD + +
Sbjct: 126 LNMTNLWNKDANIL--SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183
Query: 206 YAKRKS 211
K K
Sbjct: 184 LLKNKY 189
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 27/188 (14%)
Query: 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-----SSGTTRGEIIL---DGTPMSPQ 95
V+ G V+ ++G G+GK +++++ + + ++ G +
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97
Query: 96 LFQTTCGYV--NHR---TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ G + + DLIP + + + + ++ +V+ L L
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGK---------VIELLKKADETGKLEEVVKALEL 148
Query: 151 SNVARRNISELTPS--EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
NV R I L S E +RV I L+++ DEP+ LD +
Sbjct: 149 ENVLEREIQHL--SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR-LS 205
Query: 209 RKSRAVLL 216
+ ++VL+
Sbjct: 206 EEGKSVLV 213
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 41/179 (22%), Positives = 71/179 (39%), Gaps = 28/179 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTP-MSPQL 96
L+ E++ GEV+ ++G G GK + L V T G+I D T PQ
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----TEGKIEWDLTVAYKPQ- 354
Query: 97 FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR 156
TV + L +++ N ++L L + ++ R
Sbjct: 355 ----------YIKADYEGTVYELL----SKIDASKLN---SNFYKTELLKPLGIIDLYDR 397
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
++EL+ E +RV I L++D + LLDEP+ LD + + ++ + L
Sbjct: 398 EVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 37/192 (19%), Positives = 71/192 (36%), Gaps = 24/192 (12%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVI---SRRSSGTTRGEIILDGTPMS- 93
RPG+VL ++G+ G GK + L R + I+ S
Sbjct: 92 FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSE 151
Query: 94 -----PQLFQTTCGYV--NHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLA 146
++ + + D IP ++ + L ++ +++ +
Sbjct: 152 LQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELL---KLRMEKSPEDVKRYIK 207
Query: 147 DLALSNVARRNISELTPS--EHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L NV +R+I +L S E +R IG V++ + + DEP+ LD ++
Sbjct: 208 ILQLENVLKRDIEKL--SGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 205 SYAKRKSRAVLL 216
S ++ V+
Sbjct: 266 S-LLAPTKYVIC 276
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 26/178 (14%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGK----RALLEVISRRSSGTTRGEIILDGTPMSPQLF 97
+L E E+L ++G G+GK + L + G+ I
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDIPKLNV------ 415
Query: 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN 157
+ TV Q L +++ V+ L + ++ +
Sbjct: 416 ----SMKPQKIAPKFPGTVRQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQE 464
Query: 158 ISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
+ L+ E +RV I L + L+DEP+ LD + ++ + +
Sbjct: 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 53/177 (29%), Positives = 73/177 (41%), Gaps = 34/177 (19%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ F N L DISL + PGE+L ++G+ G GK LL + +G GEI L
Sbjct: 12 KSFQN-TPVL--NDISLSLDPGEILFIIGASGCGKTTLLRCL----AGFEQPDSGEISLS 64
Query: 89 GTPMSPQL-------------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRY 135
G + + Q V L P LTV + + Y L G
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQE---GV-----LFPHLTVYRNIAYG--LGNGK-GRTA 113
Query: 136 VRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
RI +L +S +A R EL+ + +R + L DP L+LLDEP LD
Sbjct: 114 QERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 8e-14
Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 27/164 (16%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMS---P 94
++ +S ++R GE++ +LG GSGK +L +I +G T+G++ + G ++ P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI----AGLERPTKGDVWIGGKRVTDLPP 84
Query: 95 Q------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
Q +FQ Y L +TV + + L +V + +AR+R++L +
Sbjct: 85 QKRNVGLVFQN---YA-----LFQHMTVYDNVSFG--LRE-KRVPKDEMDARVRELLRFM 133
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + A R EL+ + +RV + L P +LL DEP +D
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG+++ +LK I++ +R GEV+ V+G GSGK L ++ GEII+DG +
Sbjct: 34 FGSLE---VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLK 89
Query: 94 PQL-----FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP----QVSRYVRNARIRQV 144
+ + G V R +L P +TV ++++ P + R A+ ++
Sbjct: 90 AKDTNLNKVREEVGMVFQRFNLFPHMTVLN------NITLAPMKVRKWPREKAEAKAMEL 143
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L + L + A L+ + +RV I L +P ++L DEPT LDP
Sbjct: 144 LDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDP 192
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDG---TPMSPQ--- 95
++ E+ + +LG G+GK LE+I+ G RGE+ L+G TP+ P+
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIA----GIVKPDRGEVRLNGADITPLPPERRG 71
Query: 96 ---LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ Q Y L P L+V + + Y V R R+ R+R++ L +++
Sbjct: 72 IGFVPQD---YA-----LFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAH 118
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
+ R + L+ E +RV + LV P LLLLDEP +D
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 9e-12
Identities = 84/504 (16%), Positives = 142/504 (28%), Gaps = 155/504 (30%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRAL-LEVISRRSSGTTRGEIILDGTPMSP 94
++ AL LE+RP + + + G GSGK + L+V S M
Sbjct: 139 KLRQAL------LELRPAKNVLIDGVLGSGKTWVALDVC--LSYKVQCK--------MDF 182
Query: 95 QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR--------NARIRQVLA 146
++F N ++ L Q L Y + + A +R++L
Sbjct: 183 KIFWLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 147 D-------LALSNVARRNISE--------------------LTPSEHRRVVIGTQ---LV 176
L L NV L+ + + + L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 177 KDPVLLLL---------DEP--TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225
D V LL D P + +P +I + + +K
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----- 354
Query: 226 LPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIG-FP---------------------CPEL 263
L L L + F + FP +
Sbjct: 355 ---LTTIIESSLNVL----EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 264 ENPLMYYLCLSTVDRRSRERFIESNNQIVALVEKFKIEGAPYRKCASSVIMDHGNSTIPS 323
N L Y S V+++ +E I + + L K + E A +R I+DH N IP
Sbjct: 408 VNKLHKY---SLVEKQPKESTISIPSIYLELKVKLENEYALHRS-----IVDHYN--IPK 457
Query: 324 LTSHKMPLVNFSKPGGFQDYQWSF---------MSRNGLIFSSISGSY-FISTFIAAFTF 373
+ P Q Y +S +F + + F+ I +
Sbjct: 458 ----TFDSDDLIPPYLDQ-YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 374 P----------VHRTRYYQE---AQEGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQA 420
+ + ++Y+ + Y + + F LP +I
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYER--LVNAILDF-LP------KIEENLI--- 560
Query: 421 TGLSTSTDLFQFSLMLWSCFLFAE 444
S TDL + +LM +F E
Sbjct: 561 --CSKYTDLLRIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 1e-06
Identities = 85/645 (13%), Positives = 167/645 (25%), Gaps = 197/645 (30%)
Query: 7 TGEEEY-YLKIDLQH--PALVETGSCFQRVFGNIQTALILKDISLEVRP----GEVLAVL 59
TGE +Y Y I L A V+ C KD+ + E+ ++
Sbjct: 11 TGEHQYQYKDI-LSVFEDAFVDNFDC--------------KDVQDMPKSILSKEEIDHII 55
Query: 60 GSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVN---HRTDLIPSLTV 116
SK + L + S + ++ + + ++ PS+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE------VLRINYKFLMSPIKTEQRQPSMMT 109
Query: 117 EQTLYYAAHLSIGPQ------VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVV 170
+ L Q VSR ++RQ L EL P + V+
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------------LELRP--AKNVL 154
Query: 171 I-G------TQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS 223
I G T + D + L + + + S +L M
Sbjct: 155 IDGVLGSGKTWVALD---VCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEM----- 201
Query: 224 DVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSIGFPCPELENPLMYYLCLSTVDRRSRER 283
L L+Y ++ + ++ L + ++ R
Sbjct: 202 -------------LQKLLY----QIDPNW-------TSRSDHSSNIKLRIHSIQAELRRL 237
Query: 284 FIESNNQIVALV----------EKFKIEGAPYRKC-------ASSVIMDHGNSTIPSLTS 326
+ LV F + C V + + T+
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNL------SCKILLTTRFKQVT----DFLSAATTT 287
Query: 327 HKMPLVNFSKPGGFQDYQWSFMSRNGL-IFSSISGSYFISTFIAAFTFPVHRTRYYQEAQ 385
H + L + + + P +E
Sbjct: 288 H-ISLD---------HHSMTLTPDEVKSLLLKYLD-------CRPQDLP-------REVL 323
Query: 386 EGLYSGPLFILTYIFFSLPFSILSVGAASWIIFQATGLSTSTDLFQFSL----------M 435
P + S+ + G A+W ++ T + + SL M
Sbjct: 324 TT---NPRRL------SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 436 LWSCFLFAE--YLSVALLLVVESGFTAAVVSSYINIIFLVLGSGYLRSFRSMAEWLVYMS 493
+F ++ LL ++ + V +N L + + + +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---------KLHKYSLVEKQPKEST 425
Query: 494 YGTQARYVGAFLSRQMFGDGRLRNMYSDKYS--NCTIPHPFGCRYTDG--ASFLSERYGH 549
+ Y+ L ++ + L D Y+ Y D S + + H
Sbjct: 426 ISIPSIYLE--LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--H-H 480
Query: 550 -----ETGDFSFFITKYTDGASFLSERYGHET----GDFSLSDVL 585
+ F + D FL ++ H++ S+ + L
Sbjct: 481 LKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 9e-12
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 43/187 (22%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----RAL--LEVISRRSSGTTRGEIIL 87
+G + +LK +SL+ R G+V++++GS GSGK R + LE + G II+
Sbjct: 16 YGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-------SEGAIIV 65
Query: 88 DGTPMSPQLFQTTCGYVNHRTD----------------LIPSLTVEQTLYYAAHLSIGP- 130
+G ++ + V + L +TV + ++ P
Sbjct: 66 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE------NVMEAPI 119
Query: 131 ---QVSRYVRNARIRQVLADLALSNVARRNI-SELTPSEHRRVVIGTQLVKDPVLLLLDE 186
+S++ R + LA + + A+ L+ + +RV I L +P +LL DE
Sbjct: 120 QVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179
Query: 187 PTVNLDP 193
PT LDP
Sbjct: 180 PTSALDP 186
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.0 bits (157), Expect = 1e-11
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 41/179 (22%)
Query: 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TP 91
G I +K I L+V G+++ ++G+ G+GK L I+ +G+II +G T
Sbjct: 17 GAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITN 72
Query: 92 MSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ + V + P LTV + L A Y R + + DL
Sbjct: 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGA----------YNRKDK-EGIKRDLEW 121
Query: 151 SNVARRNISELTP--SEHRR-------------VVIGTQLVKDPVLLLLDEPTVNLDPL 194
I L P E + + IG L+ P LL++DEP++ L P+
Sbjct: 122 -------IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPI 173
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 6e-11
Identities = 34/177 (19%), Positives = 65/177 (36%), Gaps = 28/177 (15%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L L ++ + G G GK L+ I+ +DG P +
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ---------VDGFPTQEEC---RT 497
Query: 102 GYVNHRTDLIPS-LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-RRNIS 159
YV H D S +V ++ + I+ L + ++ IS
Sbjct: 498 VYVEHDIDGTHSDTSVLDFVFESG----------VGTKEAIKDKLIEFGFTDEMIAMPIS 547
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
L+ ++ + ++++ +LLLDEPT +LD ++ V+ L +Y +
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN----VAWLVNYLNTCGITSIT 600
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGT 173
+ ++ R + I + + L L V+ I L+ + ++V+
Sbjct: 855 SKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAA 914
Query: 174 QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ P L++LDEPT LD S + LS K V++
Sbjct: 915 GTWQRPHLIVLDEPTNYLDRDS----LGALSKALKEFEGGVII 953
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 26/175 (14%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS----PQL-- 96
L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG ++ +L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTK 102
Query: 97 --------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
FQ + N L+ S TV + L + R+ ++L+ +
Sbjct: 103 ARRQIGMIFQ----HFN----LLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLV 151
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203
L + S L+ + +RV I L +P +LL D+ T LDP +T I+ +L
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-09
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 32/167 (19%)
Query: 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSPQL--- 96
L ++++ + GE +LG G+GK + +I+ G + GE+ D ++
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIA----GLDVPSTGELYFDDRLVASNGKLI 76
Query: 97 -----------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVL 145
FQT + L P+LT + + + ++S+ R+ +V
Sbjct: 77 VPPEDRKIGMVFQT---WA-----LYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVA 125
Query: 146 ADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
L + +V EL+ ++ +RV + LVKDP LLLLDEP NLD
Sbjct: 126 KILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 5e-08
Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 40/179 (22%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT---TRGEIILDG- 89
FG AL +S+ V G+V ++G GSGK L+ VI +G G + +
Sbjct: 17 FGEF-KAL--DGVSISVNKGDVTLIIGPNGSGKSTLINVI----TGFLKADEGRVYFENK 69
Query: 90 --TPMSPQL---------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
T P FQ + + +TV + L ++
Sbjct: 70 DITNKEPAELYHYGIVRTFQ------TPQ--PLKEMTVLENLLIGEICPGESPLNSLFYK 121
Query: 139 ARIRQ----------VLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187
I + +L L LS++ R EL+ + + V IG L+ +P ++++DEP
Sbjct: 122 KWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 30/174 (17%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
+ FGN L +I+L+++ GE +A+LG GSGK LL I+ G T G+I
Sbjct: 10 VKKFGNFT---ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIA----GIYKPTSGKIYF 62
Query: 88 DG---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
D T + P+ +FQ + L P +TV + + + L + R +
Sbjct: 63 DEKDVTELPPKDRNVGLVFQN---WA-----LYPHMTVYKNIAFPLELR---KAPREEID 111
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
++R+V L + + R +L+ + +RV I LVK+P +LLLDEP NLD
Sbjct: 112 KKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSP 94
ILK ++L V GEV A++G G+GK L ++++ T RGEI+LDG +SP
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGT-TRGEIILDG---TPMSP 94
IL+ +SL+V PGEV A++G GSGK L ++ R T G + G +SP
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+L ++ V+PG ++AVLG GSGK L+ +I R RG + +D
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELD 406
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 30/174 (17%)
Query: 31 QRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIIL 87
++ FG ++ + +S EV+ GE +A+LG G GK L +++ G T GEI
Sbjct: 10 KKYFGKVK---AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLA----GIYKPTSGEIYF 62
Query: 88 DG---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRN 138
D + P+ +FQ Y L P +TV + + + ++S+
Sbjct: 63 DDVLVNDIPPKYREVGMVFQN---YA-----LYPHMTVFENIAFPLRAR---RISKDEVE 111
Query: 139 ARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+ ++ L + N+ R ++L+ + +RV + LVK P +LL DEP NLD
Sbjct: 112 KRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 46/191 (24%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
LK I+ + G A++G GSGK + +++ R G+I + G ++
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--AEGDIKIGGKNVNKYNRNSIR 92
Query: 94 ------PQ---LFQTTCGYVNHRTDLI----PSLTVEQTLYYAAHLSIGPQVSRYVRNAR 140
PQ LF T Y N I T E+ + A ++A+
Sbjct: 93 SIIGIVPQDTILFNETIKY-N-----ILYGKLDATDEE-VIKAT------------KSAQ 133
Query: 141 IRQVLADLAL---SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
+ + L + V + + +L+ E +R+ I L+KDP +++ DE T +LD + Y
Sbjct: 134 LYDFIEALPKKWDTIVGNKGM-KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEY 192
Query: 198 LIVSMLSSYAK 208
L + K
Sbjct: 193 LFQKAVEDLRK 203
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 30/173 (17%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILD 88
+ FGN + ++L ++ GE L +LG G GK L +I+ G T G I
Sbjct: 19 KRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIA----GLEEPTEGRIYFG 71
Query: 89 G---TPMSPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
T + P+ +FQ+ Y + P +TV + + + + + + +
Sbjct: 72 DRDVTYLPPKDRNISMVFQS---YA-----VWPHMTVYENIAFPLKIK---KFPKDEIDK 120
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
R+R L + + R ++L+ + +RV + +V +P +LL+DEP NLD
Sbjct: 121 RVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 12/71 (16%)
Query: 31 QRVFGNIQ-----------TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG 79
+I + +IL +I+L ++ GEV+ ++G GSGK L ++I R
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI- 60
Query: 80 TTRGEIILDGT 90
G++++DG
Sbjct: 61 PENGQVLIDGH 71
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 24/79 (30%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKR---ALLEVISRRSSGTTRGEIILDGTPMS----- 93
+L+ ++ + PG+V A++G GSGK ALL+ T G+++LDG P+
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ----NLYQPTGGKVLLDGEPLVQYDHH 89
Query: 94 ------------PQLFQTT 100
P LF +
Sbjct: 90 YLHTQVAAVGQEPLLFGRS 108
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 5e-06
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
IL+DIS E +P ++A G G GK + ++ R T GEI +DG P
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQP 65
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS-------- 93
L+D+S V PG+ LA++G G+GK +L ++ R + G I +DG +S
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDISSGCIRIDGQDISQVTQASLR 127
Query: 94 ------PQ---LFQTTCGYVNHRTDLI----PSLTVEQTLYYAAHLSIGPQVSRYVRNAR 140
PQ LF T N I + ++ + AA + A
Sbjct: 128 SHIGVVPQDTVLFNDTIAD-N-----IRYGRVTAGNDE-VEAAA------------QAAG 168
Query: 141 IRQVLADLAL---SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197
I + + V R + +L+ E +RV I ++K P ++LLDE T LD +
Sbjct: 169 IHDAIMAFPEGYRTQVGERGL-KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNER 227
Query: 198 LIVSMLSSYAK 208
I + L+
Sbjct: 228 AIQASLAKVCA 238
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 41/174 (23%)
Query: 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------- 93
IL++IS + PG+ + +LG GSGK LL R T GEI +DG
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--NTEGEIQIDGVSWDSITLEQW 92
Query: 94 ----------PQLFQTTCGY----VNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNA 139
+F T +D Q ++ A + +
Sbjct: 93 RKAFGVIPQKVFIFSGTFRKNLDPNAAHSD--------QEIWKVADEV---GLRSVIEQ- 140
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193
L V L+ + + + ++ +LLLDEP+ +LDP
Sbjct: 141 ------FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGT 80
+LKDI+ ++ G++LAV GS G+GK +LL +I S G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 94
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 42/182 (23%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGK----R--ALLEVISRRSSGTTRGEI 85
+VFG + ++++SLEV+ GE + +LG G GK R A LE +RG+I
Sbjct: 11 KVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-------SRGQI 60
Query: 86 ILDGTPMSPQL---------------FQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP 130
+ ++ FQ+ Y L P +TV + + L
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQS---YA-----LYPHMTVYDNIAFPLKLR--- 109
Query: 131 QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190
+V R + R+R+V L L+ + R EL+ + +RV +G +V+ P + L+DEP N
Sbjct: 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 191 LD 192
LD
Sbjct: 170 LD 171
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
L++I+L++ G+ +A++G GSGK + +I+R G I++DG
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHD 406
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 30 FQRV-FG-NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87
+ V F + L +S + G+ +A++G GSGK + + +R G I L
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICL 402
Query: 88 DGTP 91
DG
Sbjct: 403 DGHD 406
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVI 73
+LKDI+ ++ G++LAV GS G+GK +LL +I
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMI 54
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTP 91
ILKDI+L + GE +A +G G GK L+ +I R T G+I++DG
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPR----FYDVTSGQILIDGHN 404
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 22/81 (27%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGT--TRGEI----------- 85
L I+ + G ++AV+G G GK +LL + + G +G +
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQN 79
Query: 86 ------ILDGTPMSPQLFQTT 100
IL G + +++
Sbjct: 80 DSLRENILFGCQLEEPYYRSV 100
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 30/171 (17%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGT 90
+G + + KDI+L++ GE + +G G GK LL +I +G T G++ +
Sbjct: 13 WGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI----AGLETITSGDLFIGEK 65
Query: 91 PM---SPQ------LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARI 141
M P +FQ+ Y L P L+V + + + L+ + V N R+
Sbjct: 66 RMNDTPPAERGVGMVFQS---YA-----LYPHLSVAENMSFGLKLA---GAKKEVINQRV 114
Query: 142 RQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192
QV L L+++ R L+ + +RV IG LV +P + LLDEP NLD
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 36/108 (33%)
Query: 25 ETGSCFQRVFGNIQ------------TALILKDISLEVRPGEVLAVLGSKGSGK---RAL 69
++G + GN++ ILK ++L+V+ G+ +A++G+ G GK L
Sbjct: 376 KSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQL 435
Query: 70 LEVISRRSSGTTRGEIILDGTPMS-----------------PQLFQTT 100
++ R G + +DG + P LF TT
Sbjct: 436 MQ----RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATT 479
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 8e-04
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 36/108 (33%)
Query: 25 ETGSCFQRVFGNIQ------------TALILKDISLEVRPGEVLAVLGSKGSGKR---AL 69
G + GN+Q + +L+ +SLEV+ G+ LA++GS G GK L
Sbjct: 1019 TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQL 1078
Query: 70 LEVISRRSSGTTRGEIILDGTPMS-----------------PQLFQTT 100
LE R G + LDG + P LF +
Sbjct: 1079 LE----RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.88 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.86 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.85 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.84 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.83 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.81 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.8 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.79 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.77 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.76 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.75 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.75 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.75 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.74 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.72 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.72 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.72 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.71 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.67 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.66 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.65 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.64 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.62 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.58 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.57 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.54 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.54 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.52 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.51 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.51 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.51 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.5 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.49 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.45 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.45 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.44 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.43 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.43 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.42 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.42 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.39 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.37 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.37 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.34 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.34 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.34 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.33 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.32 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.32 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.29 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.26 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.25 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.24 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.23 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.21 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.19 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.15 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.12 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.1 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.09 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.09 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.08 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.07 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.04 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.0 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.99 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.95 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.91 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.9 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.83 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.8 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.78 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.78 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.74 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.74 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.72 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.68 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.55 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.48 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.46 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.43 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.43 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.42 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.4 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.37 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.37 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.35 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.19 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.15 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.13 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.09 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.09 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.09 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.08 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.07 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.04 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.03 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.03 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.01 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.97 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.92 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.91 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.89 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.89 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.84 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.83 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.81 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.76 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.68 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.66 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.62 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.59 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.58 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.57 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.53 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.52 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.5 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.49 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.49 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.46 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.45 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.41 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.39 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.36 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.33 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.32 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.31 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.28 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.25 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.22 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.21 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.17 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.17 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.1 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.08 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.08 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.06 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.06 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.01 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.01 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.0 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.98 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.97 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.96 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.89 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.89 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.86 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.86 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.82 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.81 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.8 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.78 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.68 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.62 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.59 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.53 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.52 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.5 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.49 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.46 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.45 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.45 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.43 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.42 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.41 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.41 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.39 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.37 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.32 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.29 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.29 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.27 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.26 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.25 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.22 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.21 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.13 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.12 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.11 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.05 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.04 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.98 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.98 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.94 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.92 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.89 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.86 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.86 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.81 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.8 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.8 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.78 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.7 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.7 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.67 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.63 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.62 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.62 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.58 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.56 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.55 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.53 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.52 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.51 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.46 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.38 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.35 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.24 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.23 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.22 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.22 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.18 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.17 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.16 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.15 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.15 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.14 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.13 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.1 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.09 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.07 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.07 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.05 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.05 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.05 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.03 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.03 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 95.02 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.02 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.01 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.01 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.0 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.97 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.96 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.94 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.94 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.93 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.93 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.93 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.92 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.9 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 94.89 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.87 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.87 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.86 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.85 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.85 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.84 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.83 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.83 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 94.82 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.78 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.77 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.75 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.75 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.74 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.74 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.73 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.72 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.72 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.71 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.67 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.67 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.63 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.63 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.62 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.61 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.58 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.55 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.54 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.53 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.53 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.49 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.49 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.49 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.46 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.46 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.43 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.41 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.39 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 94.38 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.36 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.35 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.34 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.33 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.31 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.31 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.29 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.27 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.26 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.26 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.25 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.23 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.22 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.22 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 94.18 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.18 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.17 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.16 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.16 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.15 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.14 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.14 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.14 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.12 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.11 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.09 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.06 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.05 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.03 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.02 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 94.01 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.97 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.96 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.95 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.95 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.95 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.95 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.95 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.94 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.94 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.93 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.93 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.91 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.91 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.87 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.87 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 93.85 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.85 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.83 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.83 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.82 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.82 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.82 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.81 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.8 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.79 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.78 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.73 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.72 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.71 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.7 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.69 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.64 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.64 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.6 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.56 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.53 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.49 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.48 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.41 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.39 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.39 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.38 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.33 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.16 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.15 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.12 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.09 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 93.06 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.06 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.05 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.05 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 93.04 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 92.99 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.99 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 92.98 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.96 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.93 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.9 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.89 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.88 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.84 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.8 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.75 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.75 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.75 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.74 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 92.67 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 92.66 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.64 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.63 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.49 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.47 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.46 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.43 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 92.42 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.31 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.28 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.06 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 91.97 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 91.96 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 91.93 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 91.9 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 91.86 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 91.83 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 91.68 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 91.6 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 91.59 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.54 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.48 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 91.46 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 91.27 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 90.6 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 91.21 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 91.19 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 91.13 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 91.04 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 91.03 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.01 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-48 Score=406.78 Aligned_cols=207 Identities=25% Similarity=0.386 Sum_probs=190.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~ 112 (606)
..++|+|||++|++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. . ..|+.+||++|++.+++
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~ 118 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS 118 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCT
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCC
Confidence 3579999999999999999999999999999999999998 789999999999853 1 24678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
.+||+||+.++.... ..++.+.+++++++|+.+||.+..++++.+|||||||||+|||||+.+|++|+|||||+|||
T Consensus 119 ~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD 195 (366)
T 3tui_C 119 SRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195 (366)
T ss_dssp TSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSC
T ss_pred CCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 999999999987653 34666777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+.++.+++++|++++++.|.|||+++|+. +.+.++||||++|++|++++.|+++++.
T Consensus 196 ~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 196 PATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVF 252 (366)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999877799999999974 5788999999999999999999998875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-48 Score=408.02 Aligned_cols=210 Identities=26% Similarity=0.423 Sum_probs=189.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC----Cc-ccccCeEEEEcCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM----SP-QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~----~~-~~~~~~i~yv~q~~~~~ 111 (606)
++++++|+|||+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++ .. ...++.+|||+|+..++
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-PDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-CCCcEEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 345689999999999999999999999999999999999998 7899999999987 21 23467899999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
|++||+||+.|+...+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|||||||+||
T Consensus 93 p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~L 169 (359)
T 3fvq_A 93 PHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169 (359)
T ss_dssp TTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 9999999999986532 2344566788999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|+..+.++.+.|+++.++.|.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 170 D~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 170 DEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999888777799999999964 68999999999999999999999998754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=408.07 Aligned_cols=209 Identities=26% Similarity=0.435 Sum_probs=192.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++.+|+|||+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 14 g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-CCCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 45689999999999999999999999999999999999998 789999999999854 2245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++++.+++++++++.++|.+..++++++|||||||||+|||||+.+|++|+|||||+|||+..+
T Consensus 93 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~ 169 (381)
T 3rlf_A 93 AENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169 (381)
T ss_dssp HHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHH
Confidence 99999988753 356677788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+ .+++..+||||++|++|+++..|+++++..
T Consensus 170 ~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 170 VQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHHHHHHHHHCCEEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEECC-HHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999987779999999996 468999999999999999999999998754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=391.84 Aligned_cols=207 Identities=24% Similarity=0.391 Sum_probs=185.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c---ccccCeEEEEcCCCC-CCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P---QLFQTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~---~~~~~~i~yv~q~~~-~~~~ 113 (606)
+.+|+|||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++. . ..+++.+||++|++. .+..
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCS
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-CCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccccc
Confidence 459999999999999999999999999999999999988 78999999999884 1 235678999999863 4447
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.++.... ..++.+..++++++++.+||.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+
T Consensus 100 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~ 176 (275)
T 3gfo_A 100 ASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDP 176 (275)
T ss_dssp SBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 89999999987642 346667778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.++++.|++++++.|+|||+++|+. +.+.++||||++|++|++++.|+++++..
T Consensus 177 ~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 177 MGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999733489999999976 57889999999999999999999998754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=383.83 Aligned_cols=207 Identities=25% Similarity=0.384 Sum_probs=183.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c----ccCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L----FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~----~~~~i~yv~q~~~~~~ 112 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|.++... . .++.++|++|++.++|
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 96 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCC
Confidence 579999999999999999999999999999999999998 7899999999987531 1 2346999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||+||+.++...+.....++.+..+++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|+|||||+||
T Consensus 97 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~L 176 (235)
T 3tif_A 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176 (235)
T ss_dssp TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999999998764322234566667889999999999885 49999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+.++.++++.|++++++.|+|+|+++|++. +.++||||++|++|+++..++++++
T Consensus 177 D~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC--
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999998766899999999863 5689999999999999999988764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=386.56 Aligned_cols=209 Identities=26% Similarity=0.416 Sum_probs=186.2
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c---ccccCeEEEEcCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P---QLFQTTCGYVNHRTDLI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~---~~~~~~i~yv~q~~~~~ 111 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++. . ..+++.++|++|++.++
T Consensus 34 y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~ 112 (263)
T 2olj_A 34 FGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112 (263)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCC
Confidence 344679999999999999999999999999999999999987 78999999999874 1 12456799999999999
Q ss_pred CCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 PSLTVEQTLYYAA-HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 ~~lTV~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+.+||+||+.++. ... ..++.+.+++++++++.++|.+..++++.+|||||||||+||+||+.+|++++|||||+|
T Consensus 113 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~ 189 (263)
T 2olj_A 113 PHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189 (263)
T ss_dssp TTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCccc
Confidence 9999999999964 322 234445567889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|++++++ |+|||+++|+. +++.++||++++|++|++++.|+++++.+
T Consensus 190 LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 190 LDPEMVGEVLSVMKQLANE-GMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp SCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999765 89999999974 57888999999999999999999988753
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=386.90 Aligned_cols=206 Identities=24% Similarity=0.382 Sum_probs=184.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------------ccccCeEE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------------QLFQTTCG 102 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------------~~~~~~i~ 102 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 96 (262)
T 1b0u_A 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 96 (262)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEccccccccccccccChhhHHHHhcceE
Confidence 4679999999999999999999999999999999999988 789999999998751 12456799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 103 YVNHRTDLIPSLTVEQTLYYAA-HLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 103 yv~q~~~~~~~lTV~e~l~f~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
|++|++.+++.+||+||+.++. ..+ ..++.+.+++++++++.+||.+. .++++++|||||||||+||+||+.+|+
T Consensus 97 ~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 173 (262)
T 1b0u_A 97 MVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 173 (262)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999864 322 23445556788999999999999 999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+++|||||+|||+.++..+.+.|++++++ |+|+|+++|+. +++.++||+|++|++|+++..|+++++.
T Consensus 174 lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 174 VLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999765 89999999974 5788899999999999999999998764
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-47 Score=399.99 Aligned_cols=209 Identities=23% Similarity=0.377 Sum_probs=190.2
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 34579999999999999999999999999999999999998 789999999998753 2346789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 105 ~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 181 (355)
T 1z47_A 105 YDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181 (355)
T ss_dssp HHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 99999987643 345566678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++.+
T Consensus 182 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 182 RELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999876689999999974 67899999999999999999999988753
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=399.68 Aligned_cols=209 Identities=27% Similarity=0.410 Sum_probs=189.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-CCceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 34679999999999999999999999999999999999988 789999999998753 2235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|.+..++++++|||||||||+|||||+.+|++|+|||||+|||+..+
T Consensus 93 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (362)
T 2it1_A 93 YKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLR 169 (362)
T ss_dssp HHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 99999987643 245556678899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 170 LEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999776689999999974 57899999999999999999999998853
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=381.67 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=186.8
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~l 114 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ...++.++|++|++.+++.+
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 345689999999999999999999999999999999999987 789999999998753 23567899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.+..... ..+..+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+|||+.
T Consensus 104 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~ 180 (256)
T 1vpl_A 104 QGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180 (256)
T ss_dssp BHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred cHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHH
Confidence 9999999876432 2334445567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++..+++.|+++++ .|+|||+++|++ +++..+||++++|++|++++.|+++++.+
T Consensus 181 ~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 181 NAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999975 489999999975 57888999999999999999999988754
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=374.91 Aligned_cols=201 Identities=27% Similarity=0.400 Sum_probs=179.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc------ccc-CeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ------LFQ-TTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~------~~~-~~i~yv~q~~~~~ 111 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... .++ +.++|++|++.++
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~ 94 (224)
T 2pcj_A 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI 94 (224)
T ss_dssp TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-CSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCC
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccC
Confidence 3679999999999999999999999999999999999987 7899999999987531 122 5799999999999
Q ss_pred CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
+.+||+||+.++...+ ..++.+.+++++++++.+||.+..++++++|||||||||+||+||+.+|++++|||||+||
T Consensus 95 ~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 171 (224)
T 2pcj_A 95 PELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171 (224)
T ss_dssp TTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTC
T ss_pred CCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 9999999999976543 2344455678899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
|+.++..+.+.|++++++ |+|+|+++|+. +.+ ++||++++|++|++++.|+.
T Consensus 172 D~~~~~~~~~~l~~l~~~-g~tvi~vtHd~-~~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 172 DSANTKRVMDIFLKINEG-GTSIVMVTHER-ELA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHH-TTSSEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEcCCH-HHH-HhCCEEEEEECCEEEEEeee
Confidence 999999999999999875 89999999985 345 89999999999999998863
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-47 Score=385.19 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=182.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... ..++.++|++|++.+++.+
T Consensus 19 ~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 97 (257)
T 1g6h_A 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97 (257)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCC
Confidence 4579999999999999999999999999999999999988 7899999999987531 2356799999999999999
Q ss_pred CHHHHHHHHHHc-cCCC---------CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 115 TVEQTLYYAAHL-SIGP---------QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 115 TV~e~l~f~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
||+||+.++... .... ...+.+.+++++++++.+||++..++++++|||||||||+||+||+.+|++++|
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllL 177 (257)
T 1g6h_A 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVM 177 (257)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999886542 1110 012234456789999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~ 248 (606)
||||+|||+.++.++++.|++++++ |+|||+++|+. +++.++||++++|++|++++.|++++
T Consensus 178 DEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 178 DEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999765 89999999976 57889999999999999999999888
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-47 Score=400.00 Aligned_cols=209 Identities=23% Similarity=0.375 Sum_probs=188.3
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-PTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-CCccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 34679999999999999999999999999999999999988 789999999998853 2235789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 93 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 169 (359)
T 2yyz_A 93 FENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169 (359)
T ss_dssp HHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 99999976432 233444567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++.+
T Consensus 170 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 170 MIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999876689999999974 57889999999999999999999998854
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=386.76 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=184.9
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++++|+|||+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|+++.. ...++.++|++|++.+++.+
T Consensus 22 ~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 45689999999999999999999999999999999999988 789999999999853 23456799999999998899
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK------DPVLLLLDEPT 188 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~------~p~llllDEPT 188 (606)
||+||+.++.... ...+.+++++++++.+++.+..++++++|||||||||+|||||+. +|++|+|||||
T Consensus 101 tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt 175 (266)
T 4g1u_C 101 SVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175 (266)
T ss_dssp BHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred CHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence 9999999876432 112345678999999999999999999999999999999999999 99999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
+|||+.++.++++.|++++++.++|+|+++|+. +++.++||||++|++|++++.|+++++.
T Consensus 176 s~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 176 SALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999877678999999964 5788999999999999999999998864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=399.70 Aligned_cols=209 Identities=24% Similarity=0.399 Sum_probs=189.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEcCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~q~~~~ 110 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..+
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-CCccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 34679999999999999999999999999999999999998 789999999988642 1235679999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|
T Consensus 93 ~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 169 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169 (372)
T ss_dssp CTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCcc
Confidence 99999999999987643 245556677899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++..
T Consensus 170 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999876689999999974 57899999999999999999999998853
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=398.95 Aligned_cols=208 Identities=25% Similarity=0.410 Sum_probs=188.4
Q ss_pred cee--eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCC
Q psy10223 39 TAL--ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDL 110 (606)
Q Consensus 39 ~~~--iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~ 110 (606)
+++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..+
T Consensus 15 ~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l 93 (353)
T 1oxx_K 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (353)
T ss_dssp GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCEECcccccccCChhhCCEEEEeCCCcc
Confidence 345 9999999999999999999999999999999999988 789999999988642 2246789999999999
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+|++||+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|
T Consensus 94 ~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~ 170 (353)
T 1oxx_K 94 YPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170 (353)
T ss_dssp CTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 99999999999976532 345556678899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++.++.+.|+++.++.|.|+|+++|+. +++..+|||+++|++|+++..|+++++.+
T Consensus 171 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp SCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999776689999999974 57899999999999999999999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=399.23 Aligned_cols=209 Identities=20% Similarity=0.330 Sum_probs=182.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 22 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 34679999999999999999999999999999999999998 789999999998753 2235679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+ ..++.+.+++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+..+
T Consensus 101 ~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 177 (372)
T 1v43_A 101 YENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 177 (372)
T ss_dssp HHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 99999875432 345566677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++.+.|+++.++.|.|+|+++|+. +++..+||||++|++|+++..|+++++..
T Consensus 178 ~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 178 VAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999876689999999974 57889999999999999999999998853
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=375.26 Aligned_cols=205 Identities=21% Similarity=0.373 Sum_probs=180.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~~l 114 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++... . .++.++|++|++.+++.+
T Consensus 18 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~l 96 (240)
T 1ji0_A 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPEL 96 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTS
T ss_pred CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCC
Confidence 3679999999999999999999999999999999999987 7899999999987531 1 245699999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA-LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
||+||+.++.... ....+..++++++++.++ +.+..++++++|||||||||+||+||+.+|++++|||||+|||+
T Consensus 97 tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 172 (240)
T 1ji0_A 97 TVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAP 172 (240)
T ss_dssp BHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCH
T ss_pred cHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCH
Confidence 9999998864211 122234567888999994 99889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++..+++.|+++++ .|+|+|+++|++ +++.++||++++|++|+++..|+++++.
T Consensus 173 ~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 173 ILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999976 589999999974 5788999999999999999999988764
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=392.70 Aligned_cols=204 Identities=28% Similarity=0.450 Sum_probs=184.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++ +|+|+|+++++||+++|+||||||||||||+|+|+.+ +++|+|.++|+++.. ...++.++||+|+..++|++||
T Consensus 12 ~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 89 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNV 89 (348)
T ss_dssp SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCH
T ss_pred CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-CCCcEEEECCEECCCCchhhCcEEEEecCcccCCCCCH
Confidence 345 9999999999999999999999999999999999998 789999999998853 2245679999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.|+.+.+. .++. ++++++++.++|++..++++++|||||||||+|||||+.+|++|+|||||+|||+.++
T Consensus 90 ~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~ 163 (348)
T 3d31_A 90 KKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQ 163 (348)
T ss_dssp HHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHH
T ss_pred HHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 999999876431 1221 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.++.+.|+++.++.|.|+|+++|+. +++..++||+++|++|+++..|+++++.
T Consensus 164 ~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 164 ENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999877789999999974 5789999999999999999999998874
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=371.88 Aligned_cols=202 Identities=24% Similarity=0.410 Sum_probs=180.5
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+|+|+|+++++ |+++|+||||||||||||+|+|+.+ |.+|+|.++|.++.. ...++.++|++|++.+++.+||+||+
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHH
Confidence 49999999999 9999999999999999999999987 789999999998753 23467899999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.++...+ .....+++++++++.+|+.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++..++
T Consensus 92 ~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~ 166 (240)
T 2onk_A 92 AYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLM 166 (240)
T ss_dssp HTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHH
T ss_pred HHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 8864321 11223567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.|++++++.|+|+|+++|+. +++.++||++++|++|+++..|+++++.+
T Consensus 167 ~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 167 EELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999765588999999974 57889999999999999999999988753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=374.78 Aligned_cols=205 Identities=24% Similarity=0.359 Sum_probs=181.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV~e 118 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++....+++.++|++|++ ..++.+||+|
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHH
Confidence 579999999999999999999999999999999999987 78999999999876434567899999995 5667899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc--hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALS--NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
|+.++.... .+..+.+++++++++.+||. +..++++++|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 99 nl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~ 174 (266)
T 2yz2_A 99 EVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGK 174 (266)
T ss_dssp HHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHH
Confidence 999865321 11112345788999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
..+.+.|++++++ |+|+|+++|++ +.+..+||++++|++|+++..|+++++.+
T Consensus 175 ~~l~~~l~~l~~~-g~tii~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 175 TDLLRIVEKWKTL-GKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCC-TTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999765 89999999986 46788999999999999999999988754
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-45 Score=368.25 Aligned_cols=207 Identities=23% Similarity=0.288 Sum_probs=173.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC--CCCCCeeEEEECCEeCCcc---c-ccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR--SSGTTRGEIILDGTPMSPQ---L-FQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~--~~~~~~G~I~~~G~~~~~~---~-~~~~i~yv~q~~~~~~ 112 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+ .+ +.+|+|.++|.++... . .+..++|++|++.+++
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 93 (250)
T 2d2e_A 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-VERGEILLDGENILELSPDERARKGLFLAFQYPVEVP 93 (250)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-EEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CC
T ss_pred CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CCceEEEECCEECCCCCHHHHHhCcEEEeccCCcccc
Confidence 46799999999999999999999999999999999998 55 6899999999987531 1 2456899999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-chhhcccCCC-CCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-SNVARRNISE-LTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~-LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+||+|++.+.............+..++++++++.+|+ .+..++++++ |||||||||+||+||+.+|++++|||||+|
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~ 173 (250)
T 2d2e_A 94 GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173 (250)
T ss_dssp SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGT
T ss_pred CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 99999999986532111112333445678999999999 5889999998 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRL 248 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~ 248 (606)
||+.++..+++.|+++++ .|+|+|+++|++ +.+..+ ||++++|++|+++..|+++.
T Consensus 174 LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 174 LDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp TCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred CCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999865 589999999986 467777 59999999999999999873
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=375.71 Aligned_cols=210 Identities=25% Similarity=0.319 Sum_probs=178.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--c---ccccCeEEEEcCCCCC-
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--P---QLFQTTCGYVNHRTDL- 110 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~---~~~~~~i~yv~q~~~~- 110 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. . ..+++.++|++|++.+
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 344679999999999999999999999999999999999998 78999999998875 2 2356789999998753
Q ss_pred -CCCCCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 111 -IPSLTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 111 -~~~lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.+.+||+||+.++...... ......+..++++++++.+||.+..++++++|||||||||+||+||+.+|++|+|||||
T Consensus 110 ~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPt 189 (279)
T 2ihy_A 110 FQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189 (279)
T ss_dssp SCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred cCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 3467999999875321000 01112334567899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEE--EEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAV--LLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~ti--i~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
+|||+.++..+++.|++++++ |+|+ |+++|+. +++.++||++++|++|++++.|+++++
T Consensus 190 s~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 190 AGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999876 8889 9999975 577899999999999999999998775
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=362.23 Aligned_cols=198 Identities=23% Similarity=0.385 Sum_probs=174.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|. .++.++|++|++.+++.+||+|
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-PIQGKIE----------VYQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-CSEEEEE----------ECSCEEEECSCCCCSSCCBHHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEE----------EeccEEEEcCCCccCCCCCHHH
Confidence 3579999999999999999999999999999999999998 7899998 2467999999999999999999
Q ss_pred HHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 119 TLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 119 ~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|+.++...... ......+.+++++++++.+|+.+..++++++|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 99986532111 00112334567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+.+.|++++++.|+|+|+++|+. +++.++||++++|++|+ ++.|+++++
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 999999999775589999999975 56789999999999999 999998775
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=370.46 Aligned_cols=205 Identities=20% Similarity=0.346 Sum_probs=174.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv 109 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSF 109 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBH
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccH
Confidence 579999999999999999999999999999999999988 789999999998743 234667999999998887 599
Q ss_pred HHHHHHHHHccCCCCCCHH----HHHHHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 117 EQTLYYAAHLSIGPQVSRY----VRNARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~----~~~~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+||+.++.... ..... .....+.++++.+ |+.+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 110 ~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~ 186 (271)
T 2ixe_A 110 RENIAYGLTRT---PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186 (271)
T ss_dssp HHHHHTTCSSC---CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHhhhcccC---ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccC
Confidence 99998864211 11011 1123356778888 788888999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||+.++..+++.|++++++.|+|+|+++|++. .+ ..||+|++|++|+++..|+++++.+
T Consensus 187 LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LA-ERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HH-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999986556899999999753 44 4599999999999999999988754
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=362.05 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=182.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCeeEEEECCEeCCc---ccc-cCeEEEEcCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTRGEIILDGTPMSP---QLF-QTTCGYVNHRTDLI 111 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~G~I~~~G~~~~~---~~~-~~~i~yv~q~~~~~ 111 (606)
++++++|+|+|+++++||+++|+||||||||||||+|+|+.. .+.+|+|.++|.++.. ... ++.++|++|++.++
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 345689999999999999999999999999999999999842 2678999999998743 111 34599999999999
Q ss_pred CCCCHHHHHHHHHH-c---cCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCC-CCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 112 PSLTVEQTLYYAAH-L---SIGPQVSRYVRNARIRQVLADLALS-NVARRNIS-ELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 112 ~~lTV~e~l~f~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+.+||.|++.+... . ......++.+..++++++++.+|+. +..++++. +|||||||||+||+||+.+|++|+||
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLD 189 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 189 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99999999987542 1 1111234444567889999999996 57899997 59999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc-CCeEEEEcCCeEEEecChhHHHHHHHHcCC
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF-LDRTAYLCLGDLIYAGPTRLMLEYFRSIGF 258 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~-~D~v~vL~~G~~v~~G~~~~~~~~f~~~G~ 258 (606)
|||+|||+.++..+++.|+++++ .|+|+|+++|++ +.+..+ ||++++|++|++++.|+++++.. .+..|+
T Consensus 190 EPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 190 ESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp STTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSCCSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhcCCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 99999999999999999999864 489999999975 456665 89999999999999999988754 344444
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=362.02 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=176.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
++|+|+|+++++||+++|+||||||||||||+|+|+.+ +. |+|.++|.++.. ..+++.++|++|++.+++.+||+
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 48999999999999999999999999999999999998 67 999999998742 23566799999999999999999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC-------EEEEeCCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV-------LLLLDEPTVN 190 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~-------llllDEPTsg 190 (606)
||+.++.. . ... +++++++++.+|+.+..++++++|||||||||+||+||+.+|+ +++|||||+|
T Consensus 92 e~l~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~ 163 (249)
T 2qi9_C 92 HYLTLHQH---D-KTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163 (249)
T ss_dssp HHHHTTCS---S-TTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT
T ss_pred HHHHHhhc---c-CCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCccc
Confidence 99987521 1 112 4568899999999999999999999999999999999999999 9999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
||+.++..+.+.|++++++ |+|+|+++|+. +.+.++||++++|++|+++..|+++++
T Consensus 164 LD~~~~~~l~~~l~~l~~~-g~tviivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 164 LDVAQQSALDKILSALSQQ-GLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEV 220 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEEEHHHH
T ss_pred CCHHHHHHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999765 89999999974 567899999999999999999998776
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=358.22 Aligned_cols=197 Identities=23% Similarity=0.396 Sum_probs=169.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~t 98 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RS 98 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SB
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-cc
Confidence 4679999999999999999999999999999999999988 789999999998753 235668999999998887 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ... .++++++++.+++.+..+ +++++|||||||||+|||||+.+|++++|
T Consensus 99 v~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllL 169 (247)
T 2ff7_A 99 IIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIF 169 (247)
T ss_dssp HHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 122 234667777777766544 44689999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||||+|||+.++..+++.|++++ .|+|+|+++|++. .+ +.||++++|++|++++.|+++++.
T Consensus 170 DEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 170 DEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHHHH
T ss_pred eCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999984 3899999999864 44 469999999999999999988774
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=367.61 Aligned_cols=198 Identities=24% Similarity=0.369 Sum_probs=168.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|||++|++||+++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+|+.++||+|++.+|+ .|
T Consensus 66 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~T 143 (306)
T 3nh6_A 66 GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD-ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DT 143 (306)
T ss_dssp TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC-CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EE
T ss_pred CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-cc
Confidence 4679999999999999999999999999999999999998 789999999999864 346778999999999886 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-----------hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-----------NVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-----------~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. .... +++.++++..++. ...++...+|||||||||+|||||+.+|+||||
T Consensus 144 v~eNi~~~~~-----~~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlL 214 (306)
T 3nh6_A 144 IADNIRYGRV-----TAGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214 (306)
T ss_dssp HHHHHHTTST-----TCCH----HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHhhcc-----cCCH----HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999988642 1222 2344445544443 344555679999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.+...+.+.|+++.+ ++|+|+++|+.. .+.. ||+|++|++|+++..|+++++.+
T Consensus 215 DEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 215 DEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp ECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999863 689999999753 5554 99999999999999999998865
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=353.93 Aligned_cols=199 Identities=23% Similarity=0.446 Sum_probs=171.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++.. ..+++.++|++|++.+++ .|
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~t 91 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GT 91 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EE
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-cc
Confidence 4579999999999999999999999999999999999988 789999999998753 235678999999998887 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc-----------cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR-----------NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-----------~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. .... .++++++++.+++.+..++ ++.+|||||||||+|||||+.+|++++|
T Consensus 92 v~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllL 163 (243)
T 1mv5_A 92 IRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163 (243)
T ss_dssp HHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987532 1122 2456788888888766544 4579999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++..+++.|++++ + |+|+|+++|++. .+ +.||++++|++|+++..|+++++..
T Consensus 164 DEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 164 DEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp ECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999986 3 899999999853 44 5699999999999999999887753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=353.33 Aligned_cols=195 Identities=24% Similarity=0.350 Sum_probs=172.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~~~~lTV~e 118 (606)
+++|+|+|++++ ||+++|+||||||||||||+|+|+. |.+|+|.++|.++.....++.++ |++|++.+ .+||+|
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~e 92 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVND 92 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHH
Confidence 579999999999 9999999999999999999999998 57899999998874311256799 99999887 899999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|+.+..... .. .+++++++++.+++. +..++++++|||||||||+||+||+.+|++++|||||+|||+.++.
T Consensus 93 nl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (263)
T 2pjz_A 93 IVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRH 165 (263)
T ss_dssp HHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHH
T ss_pred HHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHH
Confidence 999876532 11 135688999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC-eEEEEcCCeEEEecChhHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD-RTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D-~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.+.+.|+++++ |+|+++|++ +++.++|| ++++|++|++++.|+++++.+
T Consensus 166 ~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 166 VISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999998742 999999975 56788999 999999999999999988753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=346.92 Aligned_cols=191 Identities=21% Similarity=0.333 Sum_probs=166.6
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++ ++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|.++. ..++.++|++|++.+++.+||
T Consensus 20 y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv 95 (214)
T 1sgw_A 20 YDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISV 95 (214)
T ss_dssp SSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBH
T ss_pred eCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCH
Confidence 344 79999999999999999999999999999999999987 78999999999875 357789999999999999999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~ 196 (606)
+||+.+...... .. .+ +++++++++.+|+++. ++++.+|||||||||+||+||+.+|++++|||||+|||+.++
T Consensus 96 ~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~ 169 (214)
T 1sgw_A 96 EDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 169 (214)
T ss_dssp HHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTH
T ss_pred HHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 999998765321 11 11 3568899999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
..+++.|++++++ |+|||+++|++ +++..++|+++++ .|++
T Consensus 170 ~~l~~~l~~~~~~-g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 170 HKVLKSILEILKE-KGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHH-HSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999765 88999999986 4688888887744 4543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=348.50 Aligned_cols=196 Identities=21% Similarity=0.381 Sum_probs=167.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ + +|+|.++|.++.. ..+++.++|++|++.+++ .||
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv 109 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETI 109 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEH
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCH
Confidence 469999999999999999999999999999999999987 5 8999999998743 235678999999999886 599
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ... .+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++++||
T Consensus 110 ~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 180 (260)
T 2ghi_A 110 KYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFD 180 (260)
T ss_dssp HHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999987421 112 23456677777765432 3567899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+++.|+++. + ++|+|+++|++. .+ +.||++++|++|+++..|+++++..
T Consensus 181 EPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 181 EATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp CCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999985 3 789999999864 44 5699999999999999999988754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=367.11 Aligned_cols=197 Identities=23% Similarity=0.346 Sum_probs=173.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++.+|+|+|++|++||+++|+||||||||||||+|+|+.+ .+|+|.++|+++.. ..+++.++||+|+..+|+ +
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE--EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 34679999999999999999999999999999999999975 68999999998753 235678999999999998 6
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCC-----------CCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISE-----------LTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-----------LSgGerqRvsIa~aL~~~p~lll 183 (606)
||+||+.+.. ... ++++.++++.++|.+..++++.+ |||||||||+|||||+.+|++||
T Consensus 109 tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLL 178 (390)
T 3gd7_A 109 TFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 178 (390)
T ss_dssp EHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999985321 122 35678899999999999999988 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||+|||+.++.++.+.|+++. .++|+|+++|+. +....||||++|++|+++..|+++++.+
T Consensus 179 LDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~--e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 179 LDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI--EAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS--GGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999863 478999999985 4566799999999999999999998864
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-41 Score=334.83 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=155.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+++. ||+|
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~e 87 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQFSWIMPG-TIKE 87 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEECS----------CEEEECSSCCCCSB-CHHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-CCccEEEECC----------EEEEEecCCcccCC-CHHH
Confidence 3579999999999999999999999999999999999998 7899999988 49999999998885 9999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
|+.++.. ... .+.+++++.+++.+.. ++++.+|||||||||+|||||+.+|++++||||
T Consensus 88 nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEP 157 (229)
T 2pze_A 88 NIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 157 (229)
T ss_dssp HHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred HhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 9987531 111 1233444455554322 334689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 188 TVNLDPLSTYLIVSM-LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 188 TsgLD~~~~~~i~~~-L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
|+|||+.++..+++. ++++. .++|+|+++|++ +.+ +.||++++|++|+++..|+++++.
T Consensus 158 ts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~i~~~g~~~~~~ 217 (229)
T 2pze_A 158 FGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQ 217 (229)
T ss_dssp TTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHCSEEEEEETTEEEEEECHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999997 45553 378999999985 344 469999999999999999988775
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=334.75 Aligned_cols=193 Identities=18% Similarity=0.321 Sum_probs=156.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+ +.+||+|
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~e 84 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKG----------SVAYVPQQAWI-QNDSLRE 84 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-EEEEEEEECS----------CEEEECSSCCC-CSEEHHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCceEEECC----------EEEEEcCCCcC-CCcCHHH
Confidence 3579999999999999999999999999999999999987 7899999998 39999999864 6889999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-----hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-----VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
|+.++... .....+...+..++++.+++.+ ..++++.+|||||||||+|||||+.+|++++|||||+|||+
T Consensus 85 nl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 85 NILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp HHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred HhhCcccc----CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99875421 1111111111111223333322 24678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 194 LSTYLIVSMLS---SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 194 ~~~~~i~~~L~---~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
.++..+++.|+ ++. .|+|+|+++|+.. .+ +.||++++|++|+++..|+++++.+
T Consensus 161 ~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 99999999995 342 3789999999864 44 5799999999999999999988754
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=367.71 Aligned_cols=198 Identities=24% Similarity=0.369 Sum_probs=170.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++.. ..+|+.++|++|++.+++. ||
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv 433 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TV 433 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BH
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC-CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CH
Confidence 679999999999999999999999999999999999988 789999999999853 3457789999999999885 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. ...+ +++++++++.+++.+..+ +...+||||||||++|||||+++|++++||
T Consensus 434 ~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD 505 (582)
T 3b60_A 434 ANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD 505 (582)
T ss_dssp HHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999988531 1122 244667777777655433 345789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||++||+.++.++.+.|+++.+ |+|+|+++|++. . .+.||||++|++|++++.|+++++.+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 506 EATSALDTESERAIQAALDELQK--NRTSLVIAHRLS-T-IEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp TTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG-G-TTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHH-H-HHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999853 899999999864 3 45799999999999999999998764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=369.66 Aligned_cols=198 Identities=25% Similarity=0.385 Sum_probs=170.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.+||+++.. ..+|+.++||+|++.+++. ||
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv 433 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD-VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TI 433 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cH
Confidence 579999999999999999999999999999999999988 789999999998753 3467889999999999875 99
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhc-----------ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR-----------RNISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-----------~~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++.. + ..+ +++++++++.+++.+..+ ++..+||||||||++|||||+++|++++||
T Consensus 434 ~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlD 505 (582)
T 3b5x_A 434 ANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILD 505 (582)
T ss_pred HHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999988531 1 122 245667777777665444 345789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.++..+.+.|+++.+ |+|+|+++|++. . .+.||+|++|++|++++.|+.+++.+
T Consensus 506 Epts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 506 EATSALDTESERAIQAALDELQK--NKTVLVIAHRLS-T-IEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred CccccCCHHHHHHHHHHHHHHcC--CCEEEEEecCHH-H-HHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999853 899999999864 3 45799999999999999999988754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=373.50 Aligned_cols=202 Identities=25% Similarity=0.400 Sum_probs=168.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+||+++.. ..+|++++||+|++.+++. |
T Consensus 355 ~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 432 (587)
T 3qf4_A 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID-PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-T 432 (587)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC-CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-E
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc-CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-c
Confidence 4679999999999999999999999999999999999998 789999999998754 3467889999999999975 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNAR-----IRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++.. ..+.++..+. +.+.++.+ |++...+++..+||||||||++|||||+++|++++|||||
T Consensus 433 v~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpt 507 (587)
T 3qf4_A 433 IKENLKWGRE-----DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCT 507 (587)
T ss_dssp HHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 9999987532 1222221111 11222222 4455556778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++||+.+..++.+.|+++. .|+|+|+++|++. ....||||++|++|++++.|+++++.+
T Consensus 508 s~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~--~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 508 SSVDPITEKRILDGLKRYT--KGCTTFIITQKIP--TALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp TTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHH--HHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhC--CCCEEEEEecChH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999974 4899999999864 346899999999999999999998865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-40 Score=368.67 Aligned_cols=198 Identities=24% Similarity=0.410 Sum_probs=168.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |.+|+|.++|+++.. ..+|+.++|++|++.+++. |
T Consensus 353 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-t 430 (578)
T 4a82_A 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-T 430 (578)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC-CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-c
Confidence 3579999999999999999999999999999999999998 789999999998753 3467789999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-----------hcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-----------ARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ..+. +++.++++..++.+. .+++..+|||||||||+|||||+++|++++|
T Consensus 431 v~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illl 501 (578)
T 4a82_A 431 VKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 501 (578)
T ss_dssp HHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHhcCCC-----CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999987531 1222 335555655555433 3344568999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||+|||+.++..+.+.|+++. .++|+|+++|++. .+ +.||||++|++|++++.|+++++.+
T Consensus 502 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 502 DEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLS-TI-THADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGG-GT-TTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999884 3689999999864 34 5699999999999999999998864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=364.94 Aligned_cols=198 Identities=21% Similarity=0.390 Sum_probs=168.3
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+|+|+++++||+++|+||||||||||+|+|+|+.+ +.+|+|.+||+++.. ..+|+.++|++|++.+++. |
T Consensus 367 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 444 (598)
T 3qf4_B 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD-VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-T 444 (598)
T ss_dssp SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-B
T ss_pred CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-c
Confidence 4579999999999999999999999999999999999998 789999999998753 3467889999999998864 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhccc-----------CCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRN-----------ISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-----------v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ..++ +++.++++..++.+..++. ..+||||||||++|||||+.+|++++|
T Consensus 445 v~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illl 515 (598)
T 3qf4_B 445 VKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILIL 515 (598)
T ss_dssp HHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred HHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987521 1121 2345555555555444333 368999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+..++.+.|+++. .|+|+|+++|++. .+ +.||+|++|++|++++.|+++++.+
T Consensus 516 DEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 516 DEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-TI-KNADLIIVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-HH-HHCSEEEEECSSSEEECSCHHHHHH
T ss_pred ECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999985 4899999999875 44 5599999999999999999998864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=329.35 Aligned_cols=185 Identities=24% Similarity=0.356 Sum_probs=153.0
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++| .++|++|++.+++. ||+||
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~en 118 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSG----------RISFCSQNSWIMPG-TIKEN 118 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-EEEEEEECCS----------CEEEECSSCCCCSS-BHHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEECC----------EEEEEeCCCccCcc-cHHHH
Confidence 569999999999999999999999999999999999987 7899999987 48999999988885 99999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh-----------cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA-----------RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+. +.. ... .++++.++.+++.+.. ++.+++|||||||||+|||||+.+|++++|||||
T Consensus 119 l~-~~~------~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt 187 (290)
T 2bbs_A 119 II-GVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 187 (290)
T ss_dssp HH-TTC------CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred hh-Ccc------cch----HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence 97 321 111 1234455555554332 2345899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSML-SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L-~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++..+++.+ +++. .|+|+|+++|++ +.+ ..||++++|++|+++..|+++++.+
T Consensus 188 s~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 188 GYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp TTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEEEEECCeEEEeCCHHHHhh
Confidence 999999999999974 4553 378999999985 344 5699999999999999999988753
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=374.75 Aligned_cols=200 Identities=24% Similarity=0.424 Sum_probs=172.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
..++|+|+|++|+|||.+||+||||||||||+++|.|+.+ |.+|+|.+||.+++. +.+|++++||+|++.+|+. |
T Consensus 1091 ~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-T 1168 (1321)
T 4f4c_A 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD-TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-S 1168 (1321)
T ss_dssp SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC-CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-E
T ss_pred CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc-CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-c
Confidence 4579999999999999999999999999999999999998 789999999999864 4589999999999999986 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcccC----CCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARRNI----SELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v----~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
++|||.++.. +.+.+. +++.++++..++.+. .|+.+ ..||||||||++|||||+++|+||+|
T Consensus 1169 IreNI~~gld---~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiL 1241 (1321)
T 4f4c_A 1169 IAENIIYGLD---PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLL 1241 (1321)
T ss_dssp HHHHHSSSSC---TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHhccCC---CCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999987642 223333 456677777666432 34444 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||+||+.+...+.+.|+++. .++|+|+++|..+ ....||||+||++|+++++|+++++++
T Consensus 1242 DEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1242 DEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp ESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred eCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999874 4899999999763 467799999999999999999999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=337.38 Aligned_cols=192 Identities=23% Similarity=0.273 Sum_probs=169.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
..|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+ +..++|++|+....+.+||.|++
T Consensus 370 ~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 370 FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 36899999999999999999999999999999999987 78899875 24699999998888889999988
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
....... ....++++++++.+++.+..++++++|||||||||+||++|+.+|++|+|||||+|||+.++.++.
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH
Confidence 7641100 012356788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLE 251 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~ 251 (606)
+.|++++++.|.|+|+++|+ .+++..+||||++|++ |+++..|+++++..
T Consensus 512 ~~l~~l~~~~g~tvi~vsHd-~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 512 RAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999987678999999986 4678899999999986 88889999988765
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=362.37 Aligned_cols=199 Identities=22% Similarity=0.389 Sum_probs=171.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+++++|+|+|+++++||.++|+||+|||||||+++|.|..+ +.+|+|.+||.++.. +.+|++++||+|++.+|..
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~-~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~- 506 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD-VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC- 506 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-
T ss_pred CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc-cccCcccCCCccchhccHHHHhhcccccCCcceeeCC-
Confidence 35689999999999999999999999999999999999998 899999999999864 4578899999999999875
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcc----cCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARR----NISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
|++||+.|+.. ..+. +++.++++..++.+. .++ ....||||||||++||||++++|+|++
T Consensus 507 TI~eNI~~g~~-----~~~~----~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Ili 577 (1321)
T 4f4c_A 507 TIEENISLGKE-----GITR----EEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILL 577 (1321)
T ss_dssp EHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred chhHHHhhhcc-----cchH----HHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEE
Confidence 99999988632 2333 345666666555332 233 335799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||||+||+.+...+.+.|+++. .|+|+|+++|+.+ ..+.||+|++|++|++++.|+.+|+++
T Consensus 578 LDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 578 LDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999986 4799999999874 578899999999999999999999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=366.03 Aligned_cols=202 Identities=22% Similarity=0.382 Sum_probs=166.8
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+|+.++||+|++.+++. |
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~-~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-t 479 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD-PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-T 479 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC-CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-C
T ss_pred CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-c
Confidence 3579999999999999999999999999999999999998 789999999998753 3467789999999999976 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHH-----HHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARI-----RQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v-----~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++.. ..+.++..+.. .+.++.+ |++...++...+|||||||||+|||||+.+|+||+|||||
T Consensus 480 i~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpt 554 (1284)
T 3g5u_A 480 IAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554 (1284)
T ss_dssp HHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred HHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 9999998742 22332222111 2223333 2333334556789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++||+.+...+.+.|+++. .|+|+|+++|+.. .+ ..||+|++|++|++++.|+.+++.+
T Consensus 555 s~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 555 SALDTESEAVVQAALDKAR--EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999998874 4899999999753 45 5599999999999999999998864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=333.42 Aligned_cols=193 Identities=23% Similarity=0.267 Sum_probs=168.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
..|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+ +..++|++|+....+.+||.|++
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 36899999999999999999999999999999999987 78899875 24699999998888889999988
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
........ ...++++++++.+++.+..++++..|||||||||+||++|+.+|++|+|||||+|||+.++.++.
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 65411100 01346788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLEY 252 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~~ 252 (606)
+.|++++++.|.|+|+++|+ .+++..+||||++|++ |+++..|+++++...
T Consensus 442 ~~l~~l~~~~g~tvi~vsHd-~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVEHD-VLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999976568999999986 4688999999999996 789999999887653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=358.87 Aligned_cols=199 Identities=24% Similarity=0.394 Sum_probs=165.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV 116 (606)
+++|+|+|+++++||+++|+||||||||||+++|+|+.+ +.+|+|.++|+++.. +.+|+.++||+|++.+++ .||
T Consensus 1046 ~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti 1123 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD-PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSI 1123 (1284)
T ss_dssp CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC-CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBH
T ss_pred CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccH
Confidence 469999999999999999999999999999999999988 789999999998754 346888999999998875 699
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hcc----cCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------ARR----NISELTPSEHRRVVIGTQLVKDPVLLLLD 185 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~----~v~~LSgGerqRvsIa~aL~~~p~llllD 185 (606)
+||+.++... ...+.+ ++.+.++..++.+. .|+ ....|||||||||+|||||+++|+||+||
T Consensus 1124 ~eNi~~~~~~---~~~~~~----~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLD 1196 (1284)
T 3g5u_A 1124 AENIAYGDNS---RVVSYE----EIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196 (1284)
T ss_dssp HHHHTCCCSS---CCCCHH----HHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEE
T ss_pred HHHHhccCCC---CCCCHH----HHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999875321 122332 33444444444332 233 34579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 186 EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 186 EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||+|||+.+...+.+.|++.. .|+|+|+++|+.. .+ ..||||++|++|++++.|+++++.+
T Consensus 1197 EpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1197 EATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp SCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999998853 4899999999864 45 5599999999999999999998865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=325.17 Aligned_cols=193 Identities=20% Similarity=0.239 Sum_probs=166.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
..|+++|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.+++ ..++|++|+....+.+||.|++
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEK---------QILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-CSBCCEESSC---------CCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECC---------eeeEeechhcccccCCCHHHHH
Confidence 35788899999999999999999999999999999998 7899998653 3589999987777789999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... ... ....++++++.+++.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+.++.++.
T Consensus 352 ~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~ 425 (538)
T 3ozx_A 352 ENASKDA----LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVA 425 (538)
T ss_dssp HHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH
Confidence 8742211 111 1245788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLML 250 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~ 250 (606)
+.|++++++.|.|||+++|+ .+++..+||||++|++ |.....+++.++.
T Consensus 426 ~~l~~l~~~~g~tvi~vsHd-l~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 426 KAIKRVTRERKAVTFIIDHD-LSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHHHHTTCEEEEECSC-HHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999987779999999986 4688999999999986 5667777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-35 Score=327.53 Aligned_cols=194 Identities=17% Similarity=0.217 Sum_probs=166.4
Q ss_pred eeeEEeeEEEEeCC-----eEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 40 ALILKDISLEVRPG-----EVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 40 ~~iL~~vs~~v~~G-----e~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
+.+++|+|+++++| |+++|+||||||||||||+|+|+.+ +++|+. + .+..++|++|+.......
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-p~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-CSBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-CCCCcC------c----cCCcEEEecccccccCCc
Confidence 45789999999999 7899999999999999999999998 777852 1 134699999997766678
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||.|++..... . ... ..+.++++++.+++.+..++++.+|||||||||+||+||+.+|++|+|||||+|||+.
T Consensus 429 tv~e~~~~~~~--~--~~~---~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 429 TVRQLFFKKIR--G--QFL---NPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501 (608)
T ss_dssp BHHHHHHHHCS--S--TTT---SHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH
T ss_pred cHHHHHHHHhh--c--ccc---cHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 99998754321 1 111 1245678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC--CeEEEecChhHHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL--GDLIYAGPTRLMLEY 252 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~--G~~v~~G~~~~~~~~ 252 (606)
++.++.+.|++++++.|.|+|+++|+ .+++..+||||++|++ |+++..|+++++..-
T Consensus 502 ~~~~i~~ll~~l~~~~g~tviivtHd-l~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 502 QRIICSKVIRRFILHNKKTAFIVEHD-FIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSC-HHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCC-HHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999976668999999986 4688999999999996 899999999888653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=333.97 Aligned_cols=223 Identities=21% Similarity=0.308 Sum_probs=144.2
Q ss_pred cccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHH---------------------HHHHcCCCCC
Q psy10223 22 ALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALL---------------------EVISRRSSGT 80 (606)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLL---------------------k~L~g~~~~~ 80 (606)
..|+.+...++.+.....+++|+|||++|++||+++|+||||||||||| +++.|+.. +
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~ 91 (670)
T 3ux8_A 13 GLVPRGSHMDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-P 91 (670)
T ss_dssp ---------CEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------C
T ss_pred CcccCCCCcceEEEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-C
Confidence 3455565555554333456799999999999999999999999999998 77777765 4
Q ss_pred C-------eeEEEECCEeCCcccccCeEEEEcCCCC-------------------CCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 81 T-------RGEIILDGTPMSPQLFQTTCGYVNHRTD-------------------LIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 81 ~-------~G~I~~~G~~~~~~~~~~~i~yv~q~~~-------------------~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
. .|.|.++|.+... ..+..+++++|... .++.+||.||+.+........ ...
T Consensus 92 ~~~~i~~~~~~i~~~~~~~~~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~ 169 (670)
T 3ux8_A 92 DVDAIEGLSPAISIDQKTTSR-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEA 169 (670)
T ss_dssp CCSEEESCCCEEEESSCC------CCBHHHHTTCC-------------------------CC------------------
T ss_pred CccceeccccceEecCchhhc-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhh
Confidence 4 4566777665432 12334444444332 356789999998753321110 000
Q ss_pred HHHH------HHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 135 YVRN------ARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 135 ~~~~------~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
.... ....++++.+||.+. .++++.+|||||||||+|||||+.+|+ +|+|||||+|||+.++.++++.|++
T Consensus 170 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~ 249 (670)
T 3ux8_A 170 QIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS 249 (670)
T ss_dssp ---------CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0000 112245888999875 689999999999999999999999998 9999999999999999999999999
Q ss_pred HHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 206 l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
+++ .|.|+|+++|+. + ....||++++| ++|++++.|+++++.
T Consensus 250 l~~-~g~tvi~vtHd~-~-~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 250 MRD-LGNTLIVVEHDE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHH-TTCEEEEECCCH-H-HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHH-cCCEEEEEeCCH-H-HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 976 589999999975 3 45569999999 899999999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=321.92 Aligned_cols=187 Identities=19% Similarity=0.298 Sum_probs=158.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC-CCCCCCCH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT-DLIPSLTV 116 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~-~~~~~lTV 116 (606)
+++.+|+|+|+++++||+++|+||||||||||||+|+| |+| +|.+... +..++|++|+. .+++.+||
T Consensus 446 g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag-------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH-------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC-------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 44679999999999999999999999999999999995 222 3433221 12478999874 67889999
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
.|++.+ .. ... +++++++++.+|+. +..++++++|||||||||+||++|+.+|++|||||||+|||+.+
T Consensus 514 ~e~l~~--~~---~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~ 583 (986)
T 2iw3_A 514 LDFVFE--SG---VGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583 (986)
T ss_dssp HHHHHT--TC---SSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH
T ss_pred HHHHHH--hh---cCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 999975 21 111 46788999999995 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE-EecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI-YAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v-~~G~~~~~~~ 251 (606)
+..+.+.|++ .|.|+|+++|+ .+.+.++||++++|++|+++ +.|+.++..+
T Consensus 584 ~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 584 VAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHh----CCCEEEEEECC-HHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 9999999987 37899999986 46788999999999999997 7899988754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-34 Score=316.82 Aligned_cols=182 Identities=20% Similarity=0.293 Sum_probs=152.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE---------EECCEeCCc---c--cccCeEEEEcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI---------ILDGTPMSP---Q--LFQTTCGYVNH 106 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I---------~~~G~~~~~---~--~~~~~i~yv~q 106 (606)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+ +++|++ .++|.++.. . ..+..+++++|
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-PNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 5899999 999999999999999999999999999987 677885 355654321 0 12345789988
Q ss_pred CCCCCCC---CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTDLIPS---LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~~~~~---lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
.....+. .||.|++.... ..++++++++.+|+.+..++++++|||||||||+||+||+.+|++|+
T Consensus 114 ~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLl 181 (538)
T 1yqt_A 114 YVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYF 181 (538)
T ss_dssp CGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7544332 38988875311 11357889999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
|||||++||+.++.++.+.|+++++ .|.|+|+++|+ .+.+.++||||++|++|
T Consensus 182 LDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 182 FDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHHHHHCSEEEEEEEE
T ss_pred EECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCC-HHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999986 58999999996 46888999999999865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=320.05 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=152.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE---------EECCEeCCc---c--cccCeEEEEcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI---------ILDGTPMSP---Q--LFQTTCGYVNH 106 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I---------~~~G~~~~~---~--~~~~~i~yv~q 106 (606)
.+|+|+| .+++||+++|+||||||||||||+|+|+.+ +.+|++ .++|.++.. . ..+..+++++|
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q 183 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-PNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ 183 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-CCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECS
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-CCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeec
Confidence 5899999 999999999999999999999999999987 677885 355654321 0 12345788888
Q ss_pred CCCCCC---CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 107 RTDLIP---SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 107 ~~~~~~---~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
.....+ ..||.|++... . . .++++++++.+||++..++++++|||||||||+||+||+.+|++|+
T Consensus 184 ~~~~~~~~~~~tv~e~l~~~------~-~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl 251 (607)
T 3bk7_A 184 YVDLLPKAVKGKVRELLKKV------D-E-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 251 (607)
T ss_dssp CGGGGGGTCCSBHHHHHHHT------C-C-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhhhchhhccccHHHHhhhh------H-H-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 743322 23999988531 0 0 1347889999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
|||||+|||+.++.++.+.|+++++ .|.|+|+++|+ .+.+..++|+|++|+++.
T Consensus 252 LDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHd-l~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 252 FDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHD-LAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHHHHHCSEEEEEESCT
T ss_pred EECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecC-hHHHHhhCCEEEEECCCc
Confidence 9999999999999999999999986 48999999996 457888999999998653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-32 Score=319.79 Aligned_cols=192 Identities=19% Similarity=0.268 Sum_probs=151.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCC----CCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDL----IPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~----~~~lT 115 (606)
+++|+|+|+++++||+++|+||||||||||||+|+|+.+ +.+|+|.++|. ..++|++|+..+ ....|
T Consensus 686 ~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-P~sG~I~~~~~--------~~I~yv~Q~~~~~l~~~~~~t 756 (986)
T 2iw3_A 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-PTSGEVYTHEN--------CRIAYIKQHAFAHIESHLDKT 756 (986)
T ss_dssp SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-CSEEEEEECTT--------CCEEEECHHHHHHGGGCTTSC
T ss_pred ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEcCc--------cceEeeccchhhhhhcccccC
Confidence 579999999999999999999999999999999999988 78999999862 247888876421 12357
Q ss_pred HHHHHHHHHHccC------------C----------------------------------------------------CC
Q psy10223 116 VEQTLYYAAHLSI------------G----------------------------------------------------PQ 131 (606)
Q Consensus 116 V~e~l~f~~~~~~------------~----------------------------------------------------~~ 131 (606)
+.|++.+...... . ..
T Consensus 757 ~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~ 836 (986)
T 2iw3_A 757 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVP 836 (986)
T ss_dssp HHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEE
T ss_pred HHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccc
Confidence 7777654321000 0 00
Q ss_pred C--------C--------------------------HHHHHHHHHHHHHHcCCch-h-hcccCCCCCHHHHHHHHHHHHH
Q psy10223 132 V--------S--------------------------RYVRNARIRQVLADLALSN-V-ARRNISELTPSEHRRVVIGTQL 175 (606)
Q Consensus 132 ~--------~--------------------------~~~~~~~v~~~l~~lgL~~-~-~~~~v~~LSgGerqRvsIa~aL 175 (606)
. + +....++++++++.+||.+ . .++++++|||||||||+||++|
T Consensus 837 lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL 916 (986)
T 2iw3_A 837 MMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT 916 (986)
T ss_dssp CCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHH
Confidence 0 0 0001356788999999975 3 6889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecC
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
+.+|++|+|||||+|||+.+...+.+.|+++ +.|||+++|+. +.+.++||++++|++|+++..|+
T Consensus 917 ~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999988654 56999999874 57889999999999999987764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-32 Score=310.53 Aligned_cols=197 Identities=23% Similarity=0.327 Sum_probs=150.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH----------------------cCCCCCCeeEEEECCEeCCccc-
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS----------------------RRSSGTTRGEIILDGTPMSPQL- 96 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~----------------------g~~~~~~~G~I~~~G~~~~~~~- 96 (606)
+.+|+|||++|++||+++|+||||||||||+++|. |+. ...|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~--~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE--HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG--GCSEEEECCSSCSCSSTT
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc--ccCceeEeccccCCCCCC
Confidence 45799999999999999999999999999998764 111 12367888877653100
Q ss_pred ----------------c---------------------------cCeEEEEcCCCCCCC---------------------
Q psy10223 97 ----------------F---------------------------QTTCGYVNHRTDLIP--------------------- 112 (606)
Q Consensus 97 ----------------~---------------------------~~~i~yv~q~~~~~~--------------------- 112 (606)
+ ....|++.++..++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 0 001233333332222
Q ss_pred -----------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC-
Q psy10223 113 -----------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP- 179 (606)
Q Consensus 113 -----------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p- 179 (606)
.+||.|++.+... . . ..++..+.++.+++.. ..++++.+|||||||||+|||||+.+|
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~ 563 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSN 563 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred eecCCCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCC
Confidence 4799999987532 1 1 2345677888999975 468899999999999999999999987
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 180 --VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 180 --~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
++|+|||||+|||+.++.++++.|+++++ .|.|||+++|+.. . ...||||++| ++|++++.|+++++.
T Consensus 564 ~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 564 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 49999999999999999999999999976 4899999999753 4 4679999999 899999999999874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=299.10 Aligned_cols=175 Identities=15% Similarity=0.208 Sum_probs=140.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE-----------EECCEeCCc---cc--ccCeEEEEcCCCCCC--
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI-----------ILDGTPMSP---QL--FQTTCGYVNHRTDLI-- 111 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I-----------~~~G~~~~~---~~--~~~~i~yv~q~~~~~-- 111 (606)
+++||+++|+||||||||||||+|+|+.+ |.+|+| .++|.++.. .. ....+....|.....
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII-PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC-CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 56999999999999999999999999987 778988 566765421 00 112344444443222
Q ss_pred -CCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 112 -PSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 112 -~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
...||.+++.... .+++++++++.+++.+..++++++|||||||||+||+||+.+|++|+|||||++
T Consensus 101 ~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~ 168 (538)
T 3ozx_A 101 FLKGTVNEILTKID------------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSY 168 (538)
T ss_dssp TCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTT
T ss_pred hccCcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 2247887654211 113467899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
||+.++.++.+.|+++++ |+|||+++|+. +++..+||+|++|++|..
T Consensus 169 LD~~~~~~l~~~l~~l~~--g~tii~vsHdl-~~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 169 LDVRERMNMAKAIRELLK--NKYVIVVDHDL-IVLDYLTDLIHIIYGESS 215 (538)
T ss_dssp CCHHHHHHHHHHHHHHCT--TSEEEEECSCH-HHHHHHCSEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHhC--CCEEEEEEeCh-HHHHhhCCEEEEecCCcc
Confidence 999999999999999953 89999999864 688999999999987643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=296.21 Aligned_cols=188 Identities=21% Similarity=0.325 Sum_probs=145.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-----------ECCEeCCc---ccccCe--EEEE
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-----------LDGTPMSP---QLFQTT--CGYV 104 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-----------~~G~~~~~---~~~~~~--i~yv 104 (606)
..|++++ .+++||+++|+||||||||||||+|+|+.+ |.+|+|. +.|.++.. ....+. ..+.
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 169 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIK 169 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhc
Confidence 4677777 689999999999999999999999999988 7889872 23322210 001111 2233
Q ss_pred cCCCCC------CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhC
Q psy10223 105 NHRTDL------IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD 178 (606)
Q Consensus 105 ~q~~~~------~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~ 178 (606)
+|.... -+..++.+.+.... .. ..++++++++.+||.+..++++++|||||||||+||+||+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~ 239 (608)
T 3j16_B 170 PQYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQE 239 (608)
T ss_dssp CCCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSC
T ss_pred hhhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhC
Confidence 443221 12235666554321 11 135688999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEE
Q psy10223 179 PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 179 p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
|++|+|||||+|||+.++..+.+.|+++++ .|.|+|+++|+ .+++..++|+|++|++|..++
T Consensus 240 p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd-l~~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 240 ADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHD-LSVLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSC-HHHHHHHCSEEEEEESCTTTE
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHhCCEEEEEeCCcccc
Confidence 999999999999999999999999999976 48899999886 568899999999999876544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=292.63 Aligned_cols=199 Identities=26% Similarity=0.384 Sum_probs=153.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHH---------HHHHcCCC--C---CCe------eEEEECCEeCCcc-----
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALL---------EVISRRSS--G---TTR------GEIILDGTPMSPQ----- 95 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLL---------k~L~g~~~--~---~~~------G~I~~~G~~~~~~----- 95 (606)
..|+|||++|++||+++|+|+||||||||+ +.+.+... + ..+ +.+.+++.++...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 469999999999999999999999999997 34444321 0 112 2345554433110
Q ss_pred -c--------------------------------------ccCeEEEEcCCCCCCC------------------------
Q psy10223 96 -L--------------------------------------FQTTCGYVNHRTDLIP------------------------ 112 (606)
Q Consensus 96 -~--------------------------------------~~~~i~yv~q~~~~~~------------------------ 112 (606)
. ..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0022467777766655
Q ss_pred --------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC---C
Q psy10223 113 --------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP---V 180 (606)
Q Consensus 113 --------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p---~ 180 (606)
.+||.|++.|... . ....++.++|+.+||... .++++.+|||||||||+||++|+.+| +
T Consensus 758 g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~ 828 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRT 828 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSE
T ss_pred cCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 3678888877432 1 123567889999999763 57889999999999999999999875 7
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
||||||||+|||+.+...+++.|+++++ .|.|||+++|+. + +...||+|++| ++|++++.|+++++.+
T Consensus 829 LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL-~-~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 829 LYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL-D-VIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-H-HHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H-HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 9999999999999999999999999976 489999999975 3 44669999999 8999999999999863
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=291.95 Aligned_cols=198 Identities=25% Similarity=0.368 Sum_probs=153.5
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-cC----------CCCC---Cee------EEEECCEeCCcc-----
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RR----------SSGT---TRG------EIILDGTPMSPQ----- 95 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-g~----------~~~~---~~G------~I~~~G~~~~~~----- 95 (606)
..|+|||++|++||+++|+|+||||||||++.|. |. ..+. ..| .|.++|.++...
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 3699999999999999999999999999999853 21 1111 123 478888775310
Q ss_pred --------cc---------cCeEEEEcCCCCCC----------------------C------------------------
Q psy10223 96 --------LF---------QTTCGYVNHRTDLI----------------------P------------------------ 112 (606)
Q Consensus 96 --------~~---------~~~i~yv~q~~~~~----------------------~------------------------ 112 (606)
.. .+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 00 12246666643221 1
Q ss_pred --------CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCC---C
Q psy10223 113 --------SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDP---V 180 (606)
Q Consensus 113 --------~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p---~ 180 (606)
.+||.|++.|... . . ..+++.++|+.+||.. ..++++..|||||||||+||++|+.+| +
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~ 868 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRT 868 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCE
T ss_pred CCCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCC
Confidence 4678888776321 1 1 1234578999999987 789999999999999999999999865 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
++||||||+|||+.++.++++.|+++++ .|.|||+++|+. +. ...||+|++| ++|++++.|+++++.
T Consensus 869 lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~-i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 869 LYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DV-IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HH-HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HH-HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999976 589999999974 34 4789999999 789999999998875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-29 Score=290.69 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=150.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHH-HHcCC-------CC-----------------CCee-------EEEEC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEV-ISRRS-------SG-----------------TTRG-------EIILD 88 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~-L~g~~-------~~-----------------~~~G-------~I~~~ 88 (606)
..|+|||++|++||+++|+|+||||||||++. |+|.. .+ +.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 36999999999999999999999999999996 66432 10 1356 78888
Q ss_pred CEeCCccc-------------cc-------------------------------CeEEEEcCCCCCCC------------
Q psy10223 89 GTPMSPQL-------------FQ-------------------------------TTCGYVNHRTDLIP------------ 112 (606)
Q Consensus 89 G~~~~~~~-------------~~-------------------------------~~i~yv~q~~~~~~------------ 112 (606)
|.++.... .| +..|++..+..++|
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 87663110 00 01122211222222
Q ss_pred ------------C--------CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHH
Q psy10223 113 ------------S--------LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVI 171 (606)
Q Consensus 113 ------------~--------lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsI 171 (606)
. +|+.|++.|.. .. . ..+++.++|+.+||.. ..++++..|||||||||+|
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~-~--~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 741 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE-S--AIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKL 741 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS-H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc-h--HHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHH
Confidence 2 34555544421 11 1 2346789999999987 4689999999999999999
Q ss_pred HHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEE
Q psy10223 172 GTQLVKD---PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIY 242 (606)
Q Consensus 172 a~aL~~~---p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~ 242 (606)
|++|+.+ |+++||||||+|||+.++.++.+.|+++++ .|.|||+++|+. +.+ +.||+|++| ++|++++
T Consensus 742 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~ 818 (842)
T 2vf7_A 742 ATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVA 818 (842)
T ss_dssp HHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEE
T ss_pred HHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEE
Confidence 9999996 799999999999999999999999999986 589999999974 456 889999999 7999999
Q ss_pred ecChhHHH
Q psy10223 243 AGPTRLML 250 (606)
Q Consensus 243 ~G~~~~~~ 250 (606)
.|+++++.
T Consensus 819 ~g~~~el~ 826 (842)
T 2vf7_A 819 QGTPAEVA 826 (842)
T ss_dssp EECHHHHT
T ss_pred EcCHHHHH
Confidence 99998864
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=255.80 Aligned_cols=199 Identities=16% Similarity=0.184 Sum_probs=145.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-------------------------------------CCe
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-------------------------------------TTR 82 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-------------------------------------~~~ 82 (606)
..+++++++++++| +++|+|||||||||||++|+++..+ +.+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45799999999999 9999999999999999999766531 236
Q ss_pred eEEEECCEeCCcc---cc-cCeEEEEcCCCCCCCCCCHHHHHHHHHHcc-----------------------CCCCCC--
Q psy10223 83 GEIILDGTPMSPQ---LF-QTTCGYVNHRTDLIPSLTVEQTLYYAAHLS-----------------------IGPQVS-- 133 (606)
Q Consensus 83 G~I~~~G~~~~~~---~~-~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~-----------------------~~~~~~-- 133 (606)
|++.+||.+++.. .+ +..+++++|++.++.. +..+...|.-... ......
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 8899999998642 22 3348999999876543 5554444422110 000000
Q ss_pred --------------------------------HHHHHHHHHHHHHHcCCchhh----------------c----------
Q psy10223 134 --------------------------------RYVRNARIRQVLADLALSNVA----------------R---------- 155 (606)
Q Consensus 134 --------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~---------- 155 (606)
.....+.+.+.++.+++.+.. +
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 000123344555666554310 0
Q ss_pred ----ccCCC-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 156 ----RNISE-LTPSEHRRVVIGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 156 ----~~v~~-LSgGerqRvsIa~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
+.++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ .|.+||+++|++ ++.+.
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~--~~~~~ 361 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLA--QIAAR 361 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCH--HHHTT
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcH--HHHhh
Confidence 22223 6999999999999999999 9999999999999999999999999997 378999999985 56789
Q ss_pred CCeEEEE----cCCeEEEec
Q psy10223 229 LDRTAYL----CLGDLIYAG 244 (606)
Q Consensus 229 ~D~v~vL----~~G~~v~~G 244 (606)
||++++| ++|+++...
T Consensus 362 ~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 362 AHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp CSEEEEEEEEEETTEEEEEE
T ss_pred cCeEEEEEEeccCCceEEEE
Confidence 9999999 999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-31 Score=289.11 Aligned_cols=186 Identities=12% Similarity=0.127 Sum_probs=149.6
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-E-EEECCEeCCcccccCeEEEEcCCCC---CCCCCCHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-E-IILDGTPMSPQLFQTTCGYVNHRTD---LIPSLTVEQ 118 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~-I~~~G~~~~~~~~~~~i~yv~q~~~---~~~~lTV~e 118 (606)
.++|+++++||+++|+||||||||||+|+|+|+.. +.+| + |.++|. .++.++|++|+.. +.+.+||+|
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 47899999999999999999999999999999987 6789 8 999982 3567999999974 456689999
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHH--HhhCCCE----EEEeC-CCCCC
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQ--LVKDPVL----LLLDE-PTVNL 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~a--L~~~p~l----lllDE-PTsgL 191 (606)
|+ |+....... . ..+++.++++.+|+++..+ +++|||||||||+||++ |+.+|++ ++||| ||++|
T Consensus 202 ni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 202 PT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp TT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred hh-cccccccCc--c---hHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 88 654321110 0 1234566788889988776 88999999999999999 9999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc-----hHHhcCCe-----EEEEc-CCeEEEecChhHHH
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS-----DVLPFLDR-----TAYLC-LGDLIYAGPTRLML 250 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~-----~i~~~~D~-----v~vL~-~G~~v~~G~~~~~~ 250 (606)
|+. ...+.++++ +.+.|+|+++|+..+ ++.+++|+ |++|+ +|+++ .|+++++.
T Consensus 274 D~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 274 DEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp CSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred Chh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 444444443 346788888887641 55689999 99999 99999 99987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-24 Score=232.30 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=77.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 155 RRNISELTPSEHRRVVIGTQLV------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
++++.+|||||||||+||+||+ .+|++++|||||+|||+.++..+++.|+++.+ .|.|||+++|++ +..+.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~--~~~~~ 350 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR--EFSEA 350 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH--HHHTT
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch--HHHHh
Confidence 5678899999999999999999 79999999999999999999999999999975 589999999975 34788
Q ss_pred CCeEEEEcCCeEEE
Q psy10223 229 LDRTAYLCLGDLIY 242 (606)
Q Consensus 229 ~D~v~vL~~G~~v~ 242 (606)
+|++++|++|+++.
T Consensus 351 ~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITGGVVVN 364 (365)
T ss_dssp CSCEEEEETTEEC-
T ss_pred CCEEEEEECCEEEe
Confidence 99999999999864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-24 Score=226.93 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=77.3
Q ss_pred hhcccCCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 153 VARRNISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 153 ~~~~~v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
..+.++..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ .+.++|+++|++ ++.+.
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~ 287 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEA 287 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGG
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhh
Confidence 356678899999999999999997 5789999999999999999999999999984 378999999984 57889
Q ss_pred CCeE--EEEcCCe-EEEecChhHHH
Q psy10223 229 LDRT--AYLCLGD-LIYAGPTRLML 250 (606)
Q Consensus 229 ~D~v--~vL~~G~-~v~~G~~~~~~ 250 (606)
||++ ++|.+|+ .+.....+++.
T Consensus 288 ~d~~~~v~~~~g~s~~~~~~~~~~~ 312 (322)
T 1e69_A 288 ADLLHGVTMVNGVSAIVPVEVEKIL 312 (322)
T ss_dssp CSEEEEEEESSSCEEEEECCC----
T ss_pred CceEEEEEEeCCEEEEEEEEcchhh
Confidence 9987 8888886 45555555543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-27 Score=233.26 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=102.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC--cccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS--PQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~--~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+.+.+|+|+ ++||+++|+||||||||||||+|+|+ + +.+|+|.. .++. ....++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTTSCSE--EEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCCeeee--EEecCCchhhhcceEEecCCH-------
Confidence 446789996 89999999999999999999999999 6 77888842 2221 123467899999975
Q ss_pred HHHHH-HHHH----HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 116 VEQTL-YYAA----HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 116 V~e~l-~f~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
+||+ .+.. ... .... .++++++++. ++ ||||||+||+||+.+|++++|||||+|
T Consensus 76 -~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp -----CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred -HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 3444 2210 111 0011 1345666654 43 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
++.++.+.|+++ + .|+|+| ++|+.
T Consensus 135 ----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 135 ----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp ----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred ----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 888999999988 4 488999 88875
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-27 Score=252.01 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=135.6
Q ss_pred eeeEEeeEEEEeCCe--------------------EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccC
Q psy10223 40 ALILKDISLEVRPGE--------------------VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT 99 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge--------------------~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~ 99 (606)
+.+|+++|+++++|| +++|+||||||||||+|+|+|+.+ +.+|+|.++|.+.+ +.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-p~~GsI~~~g~~~t----~~ 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-EEEGAAKTGVVEVT----ME 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-TSTTSCCCCC--------CC
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-ccCceEEECCeecc----ee
Confidence 468999999999999 999999999999999999999987 78899999987653 22
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHH--HHHHHHHHHHHhh
Q psy10223 100 TCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPS--EHRRVVIGTQLVK 177 (606)
Q Consensus 100 ~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgG--erqRvsIa~aL~~ 177 (606)
++++|++ .++.+|+.|++.+... +.+++++++.+++.+... .+. ||+| ||||+.||++|+.
T Consensus 111 --~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~aL~~ 173 (413)
T 1tq4_A 111 --RHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAKAISM 173 (413)
T ss_dssp --CEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHHHHHH
T ss_pred --EEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHHHHHh
Confidence 6788874 5788999988754321 124678899999876533 333 9999 9999999999999
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hC----CcEEEEEecCCcc-hHHhcCCeE
Q psy10223 178 ----------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK----RK----SRAVLLTMEKPRS-DVLPFLDRT 232 (606)
Q Consensus 178 ----------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~----~~----g~tii~t~h~~~~-~i~~~~D~v 232 (606)
+|+++++||||+|||+.++.++.+.|+++.+ +. ..++++++|...+ ++.+++|++
T Consensus 174 ~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 174 MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 9999999999999999999999999999852 22 3567788876432 255555554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-25 Score=209.63 Aligned_cols=146 Identities=14% Similarity=0.073 Sum_probs=106.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
.++|+||||||||||+|+|+|... |.++|.+... ...++.++|++|+. ++.+++ + +...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~---- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF---- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence 589999999999999999999864 2344433211 13456799999975 222222 1 1100
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQ-----LVKDPVLLLLDE--PTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~a-----L~~~p~llllDE--PTsgLD~~~~~~i~~~L~ 204 (606)
.. -.+..++++..||||||||++||++ ++.+|++++||| ||++||+.....+.+.|+
T Consensus 64 ~~----------------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 FT----------------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp CC----------------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred CC----------------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134677888999999999999996 999999999999 999999999999888886
Q ss_pred HHHHhCCcEEEEEec--CCcchHHhcCCeEEEEcCCeEEE
Q psy10223 205 SYAKRKSRAVLLTME--KPRSDVLPFLDRTAYLCLGDLIY 242 (606)
Q Consensus 205 ~l~~~~g~tii~t~h--~~~~~i~~~~D~v~vL~~G~~v~ 242 (606)
+ .+.|+|+++| |+...+.+++|+ .+|+++.
T Consensus 128 ~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 4 4677888887 667778888888 5677665
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-24 Score=204.55 Aligned_cols=143 Identities=13% Similarity=0.171 Sum_probs=98.0
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
|||+++++||+++|+||||||||||+|++.+-. ..++ ....+ ++++|++.. ..+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-------~~~~-----~d~~~---g~~~~~~~~---~~~~~~~---- 58 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-------EVIS-----SDFCR---GLMSDDEND---QTVTGAA---- 58 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-------GEEE-----HHHHH---HHHCSSTTC---GGGHHHH----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC-------eEEc-----cHHHH---HHhcCcccc---hhhHHHH----
Confidence 689999999999999999999999999865311 1111 11112 445554321 0111100
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL---------- 194 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~---------- 194 (606)
...... ..+.....|.....+. ....|||||||++||++++.+|++++|||||++||+.
T Consensus 59 ---------~~~~~~-~~~~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~ 127 (171)
T 4gp7_A 59 ---------FDVLHY-IVSKRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVE 127 (171)
T ss_dssp ---------HHHHHH-HHHHHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCC
T ss_pred ---------HHHHHH-HHHHHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCC
Confidence 000011 1122223455444443 3456999999999999999999999999999999999
Q ss_pred ------HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 195 ------STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 195 ------~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.+.++.+.|++++++ |.|+|+++|++
T Consensus 128 ~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~ 159 (171)
T 4gp7_A 128 EYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSP 159 (171)
T ss_dssp HHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSH
T ss_pred HHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCH
Confidence 668999999998776 89999999974
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-27 Score=228.43 Aligned_cols=183 Identities=9% Similarity=-0.018 Sum_probs=127.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+..++++| .++++||+++|+||||||||||+|+|+|+.+ ...+.+.+.+.+.. ...++.++|++|++..++.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-~i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-NLHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST-TCEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-ceEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhc
Confidence 34568888 6999999999999999999999999999875 33333222222111 12346789999998888888887
Q ss_pred HHHHHHHHccC---CCCCCHHHHHHHHHHH------HHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 118 QTLYYAAHLSI---GPQVSRYVRNARIRQV------LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 118 e~l~f~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+++........ ..+.++.+.++++++. ++.+|+.+..+++++.|| +|+.+|++++|||||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARL 151 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHH
Confidence 77532211000 0123344455566665 667777778888889998 999999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEc
Q psy10223 189 VNL----DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 189 sgL----D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~ 236 (606)
+|| |+..+.++.+.++++.++.|.|+|+++|+ .+++.++||||++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHd-l~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-LESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSS-HHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCC-HHHHHHHHHHHHHhc
Confidence 998 78899999999999986668999999886 568999999999985
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-24 Score=220.82 Aligned_cols=175 Identities=15% Similarity=0.212 Sum_probs=136.9
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCC-CCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTD-LIP 112 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~-~~~ 112 (606)
++++|+.+++|++++|+||||||||||++.|+|+.+ +.+|+|.++|.+.... .+ +..++|++|++. ++|
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 357899999999999999999999999999999987 6789999999886431 12 346999999988 899
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVN 190 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsg 190 (606)
.+||+|++.++.... .. ..+++.+|+.+..++++++|| |||++||++++.+|+ +|+|| ||+|
T Consensus 169 ~~~v~e~l~~~~~~~----~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHHcC----Cc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 999999998865311 00 134567788888888899999 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--------chHHhcCCeEEEEcCCeE
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR--------SDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~--------~~i~~~~D~v~vL~~G~~ 240 (606)
||+.... +++.+..|.|+|+++|.+. +.+....+.|.++..|+.
T Consensus 233 lD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9998652 4555456888888888432 123345567788877754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-25 Score=232.89 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=119.6
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH-
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ- 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e- 118 (606)
+++|+|+|++|++||+++|+||||||||||+++|+|+. +|+|. +|++|++.+++. |++|
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~---------------~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVL---------------SFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEE---------------CGGGTTSGGGGG-GGTTC
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEE---------------EEecCccccccc-cHHHH
Confidence 46899999999999999999999999999999999987 58873 345666666653 6665
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+.. ..+. .+.+.++.+ |.+..+ ...|||||||| ||||+.+|+||| |++||+.+...
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~ 231 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDR 231 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGG
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHH
Confidence 655421 1121 344555553 444444 78999999999 999999999999 99999999888
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHHc
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRSI 256 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~~ 256 (606)
+..+ +|++ ...+.+|+| +|++|++++.|+.+++...|.++
T Consensus 232 i~~l---------------tH~~--~~~~~aD~i-vl~~G~iv~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 232 YLYL---------------HSRV--QTFRFEQPC-TDESGEQPFNITDADWKSFFVRL 271 (305)
T ss_dssp GGGG---------------TTTE--EEEECCCCC-CCC---CCCCCCHHHHHHHHHHS
T ss_pred HHHH---------------hCCH--HHHHhCCEE-EEeCCEEEEeCCHHHHHHHHHHH
Confidence 7521 4543 356789999 99999999999999996666554
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.8e-24 Score=217.93 Aligned_cols=146 Identities=14% Similarity=0.187 Sum_probs=99.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
.++|+||||||||||+|+|+|... +.+|+|.++|.++.....++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH-
Confidence 479999999999999999999987 7889999999887554456789999999999999999999988754321 111
Q ss_pred HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 135 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
.+.+.+.+. .+..+..+.+||||||||++|||+++. ++++|||+.|||+.. .+.++.+.+. .++
T Consensus 80 ---~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~--~~v 143 (270)
T 3sop_A 80 ---WEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV--VNI 143 (270)
T ss_dssp ---SHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT--SEE
T ss_pred ---HHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc--CcE
Confidence 122333333 455667788999999999999999876 999999999999987 4556666543 788
Q ss_pred EEEecC
Q psy10223 215 LLTMEK 220 (606)
Q Consensus 215 i~t~h~ 220 (606)
|+++|.
T Consensus 144 I~Vi~K 149 (270)
T 3sop_A 144 IPVIAK 149 (270)
T ss_dssp EEEETT
T ss_pred EEEEec
Confidence 888775
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=219.63 Aligned_cols=109 Identities=28% Similarity=0.448 Sum_probs=97.1
Q ss_pred HHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 138 NARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 138 ~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
.++++ .|+.+||.+. .++.+.+|||||||||.||++|+.+| ++++|||||+|||+.....+.++|+++.+ .|.||
T Consensus 357 ~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TV 434 (842)
T 2vf7_A 357 VKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSL 434 (842)
T ss_dssp HHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEE
T ss_pred HHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEE
Confidence 34454 6788999876 79999999999999999999999999 59999999999999999999999999975 68999
Q ss_pred EEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 215 LLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 215 i~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
|+++|+. ++.+.+|+|++| ++|++++.|+++++.
T Consensus 435 IvVeHdl--~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 435 FVVEHDL--DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp EEECCCH--HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred EEEcCCH--HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999975 366789999999 799999999988764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.2e-23 Score=215.95 Aligned_cols=173 Identities=16% Similarity=0.221 Sum_probs=136.8
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCC-CCCC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTD-LIPS 113 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~-~~~~ 113 (606)
+++|+.+++|++++|+||||||||||++.|+|+.+ +.+|+|.++|.+.... .+ +..++|++|++. ++|.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 46889999999999999999999999999999987 5689999999886421 12 346999999988 8999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgL 191 (606)
+||.|++.++.... .. ..+++.+|+.+..++++++|| |||++||++++.+|+ +|+|| ||+||
T Consensus 227 ~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 227 TVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999998865311 00 134567788888888889999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--------chHHhcCCeEEEEcCCe
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR--------SDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~--------~~i~~~~D~v~vL~~G~ 239 (606)
|+.+.. +++.+..|.|+|+++|.+. +.+....+.|.++..|+
T Consensus 291 D~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 998653 3455456889888888432 12334556777777765
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-22 Score=205.91 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=123.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
..+|+++++.+++||+++|+||||||||||++.|+|... +.+| .|.+.+.+.....+++++..+.+... +++.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 458999999999999999999999999999999999875 4446 67654443333223233333333221 12223
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C---C
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-HRRVVIGTQLVKDPVLLLLDEPTV---N---L 191 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe-rqRvsIa~aL~~~p~llllDEPTs---g---L 191 (606)
++.... .+..+..+.++++++..++. .+..+.++|.+| +||+. |+++..+|+++++||||+ + +
T Consensus 97 ~l~~~~-------~~~~~~~~~~~~~l~~~~l~--i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~ 166 (296)
T 1cr0_A 97 SLKREI-------IENGKFDQWFDELFGNDTFH--LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGES 166 (296)
T ss_dssp HHHHHH-------HHHTHHHHHHHHHHSSSCEE--EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---------
T ss_pred ccccCC-------CCHHHHHHHHHHHhccCCEE--EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCC
Confidence 333221 11122233444444332321 233346789999 66666 999999999999999999 5 5
Q ss_pred CH-HHHHHHHHHHHHHHHhCCcEEEEEecCC-cc--------------------hHHhcCCeEEEEcCCeE
Q psy10223 192 DP-LSTYLIVSMLSSYAKRKSRAVLLTMEKP-RS--------------------DVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 192 D~-~~~~~i~~~L~~l~~~~g~tii~t~h~~-~~--------------------~i~~~~D~v~vL~~G~~ 240 (606)
|. ....++.+.|++++++.|.|||+++|.. .+ .+.+.||+|++|++|+.
T Consensus 167 d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 167 DERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 65 6778899999999887799999999985 23 67889999999999874
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-23 Score=222.80 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=142.5
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE---eCCc--------ccccCeEEEEcCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT---PMSP--------QLFQTTCGYVNHR 107 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~---~~~~--------~~~~~~i~yv~q~ 107 (606)
+..+|+++ +.+.+||+++|+|||||||||||++|+|+.+ ++.|.|.++|+ ++.. ...++.++|++|+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-CCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 45799999 9999999999999999999999999999987 78899999998 4421 1256789999995
Q ss_pred -CCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 108 -TDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 108 -~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
+..++.+||.+|+.+.++..... .+++ ....+ .+..+|+|| |||+|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~-------~~~v---------~~~ld-~l~~lS~g~-qrvslA---l~~p~~----- 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR-------GQHV---------LLIMD-SLTRYAMAQ-REIALA---IGEPPA----- 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT-------TCEE---------EEEEE-CHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-------CCCH---------HHHHH-hHHHHHHHH-HHHHHH---hCCCcc-----
Confidence 55678899999998866421000 0000 01111 256789999 999999 889988
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAK---RKSR-----AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~---~~g~-----tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+|||+.+..++.++++++.+ +.|+ |+++++|+.. ...+|++++|.+|+++..|++.+.
T Consensus 276 -t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 -TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp -SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred -cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999865 2364 8888888764 578999999999999999887665
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-22 Score=206.95 Aligned_cols=132 Identities=14% Similarity=0.101 Sum_probs=108.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
+++++|+.+++|++++|+||||||||||||+|+|+.+ +.+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-~~~g~i~i~~~~e~~~~~~~~~i~~~~--------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-KEERIISIEDTEEIVFKHHKNYTQLFF--------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-TTSCEEEEESSCCCCCSSCSSEEEEEC---------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-CCCcEEEECCeeccccccchhEEEEEe---------------
Confidence 7899999999999999999999999999999999987 688999999864211 11334455443
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
+ |||+||++||+||..+|+++++||||+ .++.
T Consensus 224 ---------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~ 255 (330)
T 2pt7_A 224 ---------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAY 255 (330)
T ss_dssp ---------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHH
T ss_pred ---------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHH
Confidence 0 899999999999999999999999998 2356
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeE
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~ 240 (606)
+.|+.+. .++.|+++++|.+. +.+.+||+++|.+|+.
T Consensus 256 ~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 256 DFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 7777765 34557899999764 7889999999998863
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-24 Score=215.27 Aligned_cols=170 Identities=9% Similarity=0.008 Sum_probs=111.3
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCCCCH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~lTV 116 (606)
.-|+|||+++++|++++|+||||||||||+|+|+|+. + |+|.+ |.+.... ..++.++|++|++..++.++.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 3699999999999999999999999999999999987 3 88998 7654321 234678999998766554321
Q ss_pred -HHHHHH---HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHH-----HHHHhhCCCEEEEeCC
Q psy10223 117 -EQTLYY---AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVI-----GTQLVKDPVLLLLDEP 187 (606)
Q Consensus 117 -~e~l~f---~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsI-----a~aL~~~p~llllDEP 187 (606)
.+++.+ ..+.. +.+. ..++++++...+. ..+ .+||||||||++| +++++.+|++++||||
T Consensus 86 ~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 86 NEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp TTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred ccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence 111110 01100 1121 3456666654322 122 5789999999999 8999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 188 TVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
|+++|..+...+.+.|++..++ .+ ..| ...+|.|+++++
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~--~~---~~h------~~~~d~iiv~~~ 193 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIE--LH---EAN------LLNFNLSIINDD 193 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHH--HH---HHT------TSCCSEEEECSS
T ss_pred HHhcCCCCHHHHHHHHHHHHHH--HH---hhc------ccCCCEEEECCC
Confidence 9999999999999999887543 22 123 256788777654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=193.88 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=75.0
Q ss_pred ccCC-CCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 156 RNIS-ELTPSEHRRVVIGTQLV---------KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 156 ~~v~-~LSgGerqRvsIa~aL~---------~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
++++ .||||||||++||++|+ .+|+|++|||||++||+..+..+++.|+++. .|+|+++| + ++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~-~~- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-L-AP- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-C-CT-
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-c-cc-
Confidence 3456 79999999999999999 8999999999999999999999999998752 67887777 3 23
Q ss_pred HhcCCeEEEEcCCeEEEecChhHH
Q psy10223 226 LPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 226 ~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998765
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=186.26 Aligned_cols=80 Identities=24% Similarity=0.357 Sum_probs=71.3
Q ss_pred hcccCCCCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 154 ARRNISELTPSEHR------RVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 154 ~~~~v~~LSgGerq------RvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
.+++++.||||||| |+++|++|+.+|++++|||||+|||+..+..+.+.|+++.+. |.++|+++|++ ++.+
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~vi~~sH~~--~~~~ 318 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKD 318 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGG
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEEChH--HHHH
Confidence 45678899999999 677888888899999999999999999999999999998754 78999999973 5789
Q ss_pred cCCeEEEEc
Q psy10223 228 FLDRTAYLC 236 (606)
Q Consensus 228 ~~D~v~vL~ 236 (606)
.||++++|.
T Consensus 319 ~~d~~~~l~ 327 (339)
T 3qkt_A 319 AADHVIRIS 327 (339)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 999999996
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-21 Score=196.03 Aligned_cols=179 Identities=14% Similarity=0.100 Sum_probs=113.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
+++++|+|+||++++|++++|+||||||||||+|+|+|++ |.+.++ ..++.++|++|++ +++.+|+.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-----G~~~~~-------~~~~~i~~v~~d~-~~~~l~~~ 76 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-----GQNEVE-------QRQRKVVILSQDR-FYKVLTAE 76 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-----TGGGSC-------GGGCSEEEEEGGG-GBCCCCHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-----chhccc-------ccCCceEEEeCCc-CccccCHh
Confidence 4567999999999999999999999999999999999965 222232 2467799999985 77889999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTY 197 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~ 197 (606)
|++.+....... ..+.....+++.+.++.+ .+..+.++..+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--- 149 (245)
T 2jeo_A 77 QKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--- 149 (245)
T ss_dssp HHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH---
T ss_pred HhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH---
Confidence 998775432111 001111123345555543 455677889999999999988 5888899999999998888764
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcchHH-hcCCeEEEEcCCeEEEecChhHHHHHH
Q psy10223 198 LIVSMLSSYAKRKSRAVLLTMEKPRSDVL-PFLDRTAYLCLGDLIYAGPTRLMLEYF 253 (606)
Q Consensus 198 ~i~~~L~~l~~~~g~tii~t~h~~~~~i~-~~~D~v~vL~~G~~v~~G~~~~~~~~f 253 (606)
++++ .+.++++++|... .+. .+++++ ++|+ +.+++.+.+
T Consensus 150 -----l~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 150 -----IRDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp -----HHTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred -----HHHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 2222 3789999988533 333 334434 6675 566666544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-20 Score=214.45 Aligned_cols=157 Identities=19% Similarity=0.331 Sum_probs=122.5
Q ss_pred cCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCC-C--H--HHHHHHHHHHHHHcC
Q psy10223 75 RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV-S--R--YVRNARIRQVLADLA 149 (606)
Q Consensus 75 g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~-~--~--~~~~~~v~~~l~~lg 149 (606)
++++ +..++|.++|+++.. +..+||.|++.|.......... . . ....++..+.|..+|
T Consensus 390 ~rl~-~~~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~vg 452 (916)
T 3pih_A 390 RRLN-REALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFLVDVG 452 (916)
T ss_dssp CCBC-TTGGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred ccCC-hHhcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 3444 567889999887642 3346888888875543221110 0 0 011233456788899
Q ss_pred Cchh-hcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHH
Q psy10223 150 LSNV-ARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVL 226 (606)
Q Consensus 150 L~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~ 226 (606)
|... .++.+.+|||||||||.||++|+++|+ +|+|||||+|||+....++++.|+++.+ .|.|||+++|+. + +.
T Consensus 453 L~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~-~-~~ 529 (916)
T 3pih_A 453 LEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDE-E-VI 529 (916)
T ss_dssp CTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCH-H-HH
T ss_pred CccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H-HH
Confidence 9865 689999999999999999999999887 9999999999999999999999999975 589999999974 3 44
Q ss_pred hcCCeEEEE------cCCeEEEecChhHHHH
Q psy10223 227 PFLDRTAYL------CLGDLIYAGPTRLMLE 251 (606)
Q Consensus 227 ~~~D~v~vL------~~G~~v~~G~~~~~~~ 251 (606)
..+|+|++| ++|++++.|+++++.+
T Consensus 530 ~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 530 RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 569999999 9999999999998753
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-22 Score=206.77 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=100.8
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIG 129 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~ 129 (606)
+++|++++|+||||||||||+|+|+|+++ +..|. +.+++++|++.+++. |+.|++.+...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~~~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~---- 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-RWDHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR---- 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH-TSTTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc-ccCCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh----
Confidence 79999999999999999999999999876 44331 458999999999988 99999754221
Q ss_pred CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 130 PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 130 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
.+.+.....+++.++|+.++ ....+.++..|||||+||+++|++++.+|+|+|+|||+..+|+
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 12222223456778888888 5555678899999999999999999999999999999999987
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-19 Score=199.08 Aligned_cols=156 Identities=10% Similarity=0.098 Sum_probs=121.3
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
++.+++|++++|+||||||||||++.++|... +. |+ +.+.+++|++. .++.++. .+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-~~-G~--------------~vi~~~~ee~~----~~l~~~~---~~- 330 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-AN-KE--------------RAILFAYEESR----AQLLRNA---YS- 330 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-TT-TC--------------CEEEEESSSCH----HHHHHHH---HT-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-hC-CC--------------CEEEEEEeCCH----HHHHHHH---HH-
Confidence 55899999999999999999999999999764 22 32 12445566531 1222221 11
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHHHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL-----STYLIVS 201 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~-----~~~~i~~ 201 (606)
. +... ++ +...|+.+..+..+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.+
T Consensus 331 -~--g~~~-------~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ 398 (525)
T 1tf7_A 331 -W--GMDF-------EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIG 398 (525)
T ss_dssp -T--SCCH-------HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHH
T ss_pred -c--CCCH-------HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHH
Confidence 1 1221 12 33567777888889999999999999999999999999999 99999999 9999999
Q ss_pred HHHHHHHhCCcEEEEEecCCc---------chHHhcCCeEEEEcCCe
Q psy10223 202 MLSSYAKRKSRAVLLTMEKPR---------SDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 202 ~L~~l~~~~g~tii~t~h~~~---------~~i~~~~D~v~vL~~G~ 239 (606)
+++.+++ .|.|+|+++|+.. ..+..+||+|++|++|+
T Consensus 399 ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 399 VTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9998865 5899999999861 45778999999999886
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-19 Score=206.30 Aligned_cols=171 Identities=9% Similarity=0.088 Sum_probs=120.8
Q ss_pred cEEEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH--------cCCCCCC
Q psy10223 11 EYYLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS--------RRSSGTT 81 (606)
Q Consensus 11 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~--------g~~~~~~ 81 (606)
+..+++ +..|+..... .+.+.+++|+++.+++|++++|+||||||||||||+|+ |..- |.
T Consensus 629 ~~~i~i~~~rHP~le~~----------~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v-pa 697 (934)
T 3thx_A 629 QGRIILKASRHACVEVQ----------DEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-PC 697 (934)
T ss_dssp SCEEEEEEECCTTTTTC------------CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB-SE
T ss_pred CcceEeecCccchhhhc----------CCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc-cc
Confidence 445777 7777654211 12356899999999999999999999999999999993 4322 11
Q ss_pred eeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCC
Q psy10223 82 RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161 (606)
Q Consensus 82 ~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~L 161 (606)
.+.. ++.+ +.++ ..+|+. +...+++
T Consensus 698 ~~~~---------------~~~~---d~i~----------------------------------~~ig~~---d~l~~~l 722 (934)
T 3thx_A 698 ESAE---------------VSIV---DCIL----------------------------------ARVGAG---DSQLKGV 722 (934)
T ss_dssp EEEE---------------EECC---SEEE----------------------------------EECC------------
T ss_pred cccc---------------chHH---HHHH----------------------------------HhcCch---hhHHHhH
Confidence 1110 1100 0000 111111 2234578
Q ss_pred CHHHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 162 TPSEHRRVVIGTQL--VKDPVLLLLDEPTVNLDPLSTYLI-VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 162 SgGerqRvsIa~aL--~~~p~llllDEPTsgLD~~~~~~i-~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
|+|+++++.+|+++ +++|+++||||||+|||+.....+ ..+++.++++.|.++|+++|. .++.+++|++..+.+|
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~--~el~~lad~~~~v~ng 800 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF--HELTALANQIPTVNNL 800 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC--GGGGGGGGTCTTEEEE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc--HHHHHHhcccceeEee
Confidence 88888888888888 999999999999999999999888 667777776568999999997 3678899999999999
Q ss_pred eEEEecChhHH
Q psy10223 239 DLIYAGPTRLM 249 (606)
Q Consensus 239 ~~v~~G~~~~~ 249 (606)
++...++.+++
T Consensus 801 ~v~~~~~~~~l 811 (934)
T 3thx_A 801 HVTALTTEETL 811 (934)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEecCCcE
Confidence 99988876654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-19 Score=196.93 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=70.6
Q ss_pred cCCCC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 157 NISEL-TPSEHRRVVIGTQLVKDP--VLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 157 ~v~~L-SgGerqRvsIa~aL~~~p--~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
++..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |.|||+++|++ ++...||+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~--~~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA--QIAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH--HHHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEE
Confidence 45677 999999999999999999 99999999999999999999999999975 78999999985 3556799999
Q ss_pred EEcCC
Q psy10223 234 YLCLG 238 (606)
Q Consensus 234 vL~~G 238 (606)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99665
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-20 Score=197.19 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=129.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc----------ccccCeEEEEcCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP----------QLFQTTCGYVNHRT 108 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~----------~~~~~~i~yv~q~~ 108 (606)
+..+|+++ +.+.+||+++|+||||||||||+++|+|..+ ++.|.|.+.|++..+ ..+++.+.++.|.+
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-ADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-CSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-CCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 35799999 9999999999999999999999999999987 678999998865211 11345677777754
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhh--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVA--RRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
. ...+.+.-... ...+.+.....+ .++. -+.+..+|+|| |||++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~----- 188 (347)
T 2obl_A 136 R-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV----- 188 (347)
T ss_dssp S-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-----
T ss_pred C-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-----
Confidence 2 22222221110 000111111111 1111 14577899999 899999 688877
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAK-RKSR-----AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~-~~g~-----tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
|+|||+....++.++++++.+ +.|. ||++++|+.. ..+||++.+|.+|+++..|+.++.
T Consensus 189 -t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 -RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp -BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred -ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999999865 4577 7888888754 567999999999999999887765
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=199.00 Aligned_cols=135 Identities=19% Similarity=0.326 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHccCCCC---CCH---HHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCC--CEE
Q psy10223 112 PSLTVEQTLYYAAHLSIGPQ---VSR---YVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDP--VLL 182 (606)
Q Consensus 112 ~~lTV~e~l~f~~~~~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p--~ll 182 (606)
..+||.|++.|..++..+.. +.+ ++..+++ +.|+.+||... .++.+.+|||||||||.||++|..+| ++|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 45899999999766542210 000 2334455 45889999875 79999999999999999999999985 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE------cCCeEEEecChhHHH
Q psy10223 183 LLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL------CLGDLIYAGPTRLML 250 (606)
Q Consensus 183 llDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL------~~G~~v~~G~~~~~~ 250 (606)
+|||||+|||+.....+++.|+++.+ .|.|||+++|+. + ..+.||+|++| ++|++++.|+++++.
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl-~-~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE-D-TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCH-H-HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-H-HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 99999999999999999999999965 689999999974 3 45689999999 799999999998764
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-20 Score=216.56 Aligned_cols=161 Identities=17% Similarity=0.132 Sum_probs=112.8
Q ss_pred ceeeEEeeEEEEeC-------CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEE-EEcCCCCC
Q psy10223 39 TALILKDISLEVRP-------GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCG-YVNHRTDL 110 (606)
Q Consensus 39 ~~~iL~~vs~~v~~-------Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~-yv~q~~~~ 110 (606)
++.+++|+++.+++ |++++|+||||||||||||+| |+.. . ..++| ||||+..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-~-----------------~aqiG~~Vpq~~~- 827 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-V-----------------MAQMGCYVPAEVC- 827 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-H-----------------HHTTTCCEESSEE-
T ss_pred CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-H-----------------HhheeEEeccCcC-
Confidence 35799999999987 999999999999999999999 8754 1 12344 7888652
Q ss_pred CCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q psy10223 111 IPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVN 190 (606)
Q Consensus 111 ~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsg 190 (606)
.+||.|++.. .+|+.+...+....+|++++ ++++|++++++|+++||||||+|
T Consensus 828 --~l~v~d~I~~------------------------rig~~d~~~~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~G 880 (1022)
T 2o8b_B 828 --RLTPIDRVFT------------------------RLGASDRIMSGESTFFVELS-ETASILMHATAHSLVLVDELGRG 880 (1022)
T ss_dssp --EECCCSBEEE------------------------ECC---------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTT
T ss_pred --CCCHHHHHHH------------------------HcCCHHHHhhchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCC
Confidence 3455444310 11222222223345666655 59999999999999999999999
Q ss_pred CCHHHH-HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEE--EecChhH
Q psy10223 191 LDPLST-YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLI--YAGPTRL 248 (606)
Q Consensus 191 LD~~~~-~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v--~~G~~~~ 248 (606)
+|+... ..++.+|+.++++.|.++|+++|.. +.+...+|++.++ +|++. +.|++++
T Consensus 881 td~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 881 TATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp SCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC-------
T ss_pred CChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCccc
Confidence 999985 5578899988765588999999974 5677789999887 58887 4565443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-21 Score=217.82 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=122.6
Q ss_pred ceeeEEeeEE-EEeCCeEEEEEcCCCccHHHHHHH--HHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCC
Q psy10223 39 TALILKDISL-EVRPGEVLAVLGSKGSGKRALLEV--ISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 39 ~~~iL~~vs~-~v~~Ge~~~IlG~nGsGKSTLLk~--L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~ 113 (606)
..++|+++++ .+++||+++|+||||||||||+++ ++|..+ +.+|.|.++|.+... ...++.+||++|+....++
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~ 102 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK 102 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc
Confidence 3568999999 999999999999999999999999 689876 567999999987422 1234567888886432111
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC----
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV---- 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs---- 189 (606)
+.+ ..... . ++..++++.+++.+..++.++.||||| |+++++||||+
T Consensus 103 ------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 103 ------LFI---LDASP--D-----PEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDSVTSVFQQ 153 (525)
T ss_dssp ------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEECSTTTSTT
T ss_pred ------EEE---EecCc--c-----cchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECCHHHHHHh
Confidence 100 00000 0 011223344455555666666677764 78999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch--------HHhcCCeEEEEcCCe
Q psy10223 190 -NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD--------VLPFLDRTAYLCLGD 239 (606)
Q Consensus 190 -gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~--------i~~~~D~v~vL~~G~ 239 (606)
+||+..+.++.++++.+++ .|+|+|+++|+.... +..+||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 5699999999999999976 489999999986532 345599999999843
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=155.12 Aligned_cols=83 Identities=23% Similarity=0.315 Sum_probs=74.3
Q ss_pred hcccCCCCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHh
Q psy10223 154 ARRNISELTPSEHRRVVIG------TQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLP 227 (606)
Q Consensus 154 ~~~~v~~LSgGerqRvsIa------~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~ 227 (606)
.+++++.||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|+|+++|++ ++.+
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiiivsH~~--~~~~ 127 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKD 127 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSEEEEEESCG--GGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCEEEEEEChH--HHHH
Confidence 4677899999999999886 8999999999999999999999999999999998654 78999999985 5788
Q ss_pred cCCeEEEE--cCCe
Q psy10223 228 FLDRTAYL--CLGD 239 (606)
Q Consensus 228 ~~D~v~vL--~~G~ 239 (606)
.||++++| .+|.
T Consensus 128 ~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 128 AADHVIRISLENGS 141 (148)
T ss_dssp GCSEEEEEEEETTE
T ss_pred hCCEEEEEEcCCCe
Confidence 99999999 4564
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-18 Score=201.63 Aligned_cols=146 Identities=13% Similarity=0.175 Sum_probs=100.2
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+++|+|+.+++|++++|+||||||||||||+|++.......| ..+... ...++. -+.++..+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g------~~vpa~--~~~i~~---~d~i~~~i---- 723 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG------SYVPAE--EATIGI---VDGIFTRM---- 723 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT------CCBSSS--EEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC------ccccch--hhhhhH---HHHHHHhC----
Confidence 357999999999999999999999999999999997642100001 000000 001111 11122222
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
|+.+......+.+|+|++|++.|+++ +++|+++||||||+|||+.....
T Consensus 724 ------------------------------g~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~ 772 (918)
T 3thx_B 724 ------------------------------GAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIA 772 (918)
T ss_dssp ----------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHH
T ss_pred ------------------------------ChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHH
Confidence 22222233456789999999999999 89999999999999999999999
Q ss_pred HH-HHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 199 IV-SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 199 i~-~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
+. .+++.++++.|.++|+++|+. ++.+++|+.
T Consensus 773 i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~ 805 (918)
T 3thx_B 773 IAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHT
T ss_pred HHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhc
Confidence 87 777777765689999999974 566676653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-18 Score=171.46 Aligned_cols=153 Identities=18% Similarity=0.153 Sum_probs=95.2
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-C-----CeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-T-----TRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~-----~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
+-+++||+++|+||||||||||+++|+|.... + ..|.+.+++.+... ++.++++.|+..+.+. |+.|++.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 46999999999999999999999999995431 1 22355555432100 0112222332222222 2222221
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHH-HHHHHHHHHhh-------CCCEEEEeCCCCCCCH
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH-RRVVIGTQLVK-------DPVLLLLDEPTVNLDP 193 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer-qRvsIa~aL~~-------~p~llllDEPTsgLD~ 193 (606)
+ ....+++++ +++..+.+++. +|+++++||||++||+
T Consensus 96 ~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 96 V-----------------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp E-----------------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred E-----------------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 1 112333333 33455555555 9999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHHhCCcEEEEEecCCc---chHHhcCCeEEEEcCCe
Q psy10223 194 L-------S-----TYLIVSMLSSYAKRKSRAVLLTMEKPR---SDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 194 ~-------~-----~~~i~~~L~~l~~~~g~tii~t~h~~~---~~i~~~~D~v~vL~~G~ 239 (606)
. . ..++++.|++++++.|.|||+++|... ..+...+|++++|++|+
T Consensus 141 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 141 EYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 3 1 337888888888777999999998432 23788999999998764
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.1e-19 Score=178.34 Aligned_cols=132 Identities=18% Similarity=0.239 Sum_probs=98.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-eeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
++|+++| +++|++++|+|||||||||||++|+|..+ +. +|+|.++|.++.. ..+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~~~~G~I~~~g~~i~~-~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIEY-VFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-HHCCCEEEEEESSCCS-CCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-CCCCCEEEEcCCccee-ecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999999876 55 7999998876531 111112222221
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
.+|+.. ..+ |++||++|..+|+++++|||| |+.+...+
T Consensus 79 ---------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 79 ---------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp ---------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred ---------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 122221 112 899999999999999999999 99887654
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+ +. ++ .|.++++++|.. ++.+.+||++.|..
T Consensus 117 l---~~-~~-~g~~vl~t~H~~--~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 117 L---RA-AE-TGHLVFGTLHTN--TAIDTIHRIVDIFP 147 (261)
T ss_dssp H---HH-HH-TTCEEEEEECCS--SHHHHHHHHHHTSC
T ss_pred H---HH-Hc-cCCEEEEEeCcc--hHHHHHHHHhhhcC
Confidence 4 33 33 588999999975 36788999988864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-20 Score=184.95 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=115.8
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCC--CCCCHHHHHHHHHHcc
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLI--PSLTVEQTLYYAAHLS 127 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~--~~lTV~e~l~f~~~~~ 127 (606)
.++|++++|+||||||||||+|+|+|+.. + .++|++|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 57899999999999999999999999764 2 478999998776 57899888654321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCHHHH
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH----RRVVIGTQLVKDPVLLLLDEPTVN-------LDPLST 196 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer----qRvsIa~aL~~~p~llllDEPTsg-------LD~~~~ 196 (606)
.+ .....+++.+.++.+++.+..+.++..+|+||| ||+++|++++.+|+++++||||++ ||+...
T Consensus 61 ~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~ 136 (211)
T 3asz_A 61 HP----DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADAD 136 (211)
T ss_dssp SG----GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHH
T ss_pred Ch----hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHH
Confidence 11 111234577788888887777778889999974 788999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 197 YLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 197 ~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
..+.+.+++..++.|.|++.++|+
T Consensus 137 ~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 137 ERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999988655568888777775
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-20 Score=190.13 Aligned_cols=158 Identities=13% Similarity=0.172 Sum_probs=87.9
Q ss_pred ccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC-CCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 37 IQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR-SSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 37 ~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~-~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++.+++++++.| +|+||||||||||++.|+|. .. +.+| |.++|.++....-.+.+++++|++.....+|
T Consensus 8 ~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 8 VHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEE
T ss_pred ECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 34567999999998 99999999999999999997 54 6678 8888876643222356789999888888999
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPL 194 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~ 194 (606)
|.||..++.... .. ++.+.+++. +.+..+++++++|||||||+.+|++++ ++++||||+ |||+.
T Consensus 80 v~Dt~g~~~~~~------~~---e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 80 VVDTPGYGDAIN------CR---DCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp EEEEC--------------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred hhhhhhhhhhcC------cH---HHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 999987754321 00 111111111 123456788999999999999998885 999999998 59998
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.. +.++++.+..+.++|++.|+.
T Consensus 145 ~~----~~l~~l~~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 145 DV----AFMKAIHNKVNIVPVIAKADT 167 (301)
T ss_dssp HH----HHHHHHTTTSCEEEEECCGGG
T ss_pred HH----HHHHHHHhcCCEEEEEEeCCC
Confidence 73 566666544467777777753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-19 Score=182.76 Aligned_cols=149 Identities=9% Similarity=0.073 Sum_probs=108.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
+|++++|+||||||||||++.|+|+.+ +.+|+|.++|.+.... .+ +..+++++|+..++|.+||.|++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 799999999999999999999999987 6789999999886421 11 3468999999999999999999987
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q psy10223 123 AAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202 (606)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~ 202 (606)
+.... .. ..+++..|+.+..+..+.+ .++||++|||+++.+|+.++| .||+.+..++++.
T Consensus 180 ~~~~~--~d----------~~llDt~G~~~~~~~~~~e---Ls~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~ 239 (304)
T 1rj9_A 180 MKARG--YD----------LLFVDTAGRLHTKHNLMEE---LKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQ 239 (304)
T ss_dssp HHHHT--CS----------EEEECCCCCCTTCHHHHHH---HHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHH
T ss_pred HHhCC--CC----------EEEecCCCCCCchHHHHHH---HHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHH
Confidence 54210 00 0122334444433333444 458999999999999994444 4555555566677
Q ss_pred HHHHHHhCCcEEEEEecCC
Q psy10223 203 LSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 203 L~~l~~~~g~tii~t~h~~ 221 (606)
++++.+..+.|+|+++|.+
T Consensus 240 ~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 240 AKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHcCCcEEEEECCc
Confidence 7777665588888888864
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-18 Score=195.25 Aligned_cols=134 Identities=15% Similarity=0.192 Sum_probs=99.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
++.+++|+|+. |++++|+||||||||||||+|+|....+..|.+. .. .+..+++++| +++.+++.|
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa--~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA--EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS--SEEEECCCSE---EEEECCC--
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh--hccceeeHHH---hhccCCHHH
Confidence 35799999999 9999999999999999999999975212335431 11 1335666655 556666666
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH--hhCCCEEEEeCC---CCCCCH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL--VKDPVLLLLDEP---TVNLDP 193 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL--~~~p~llllDEP---TsgLD~ 193 (606)
++. .++|+|+++++.+++++ +++|++++|||| |++||.
T Consensus 631 ~l~-------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~ 673 (765)
T 1ewq_A 631 DLA-------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDG 673 (765)
T ss_dssp -----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHH
T ss_pred HHH-------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCH
Confidence 542 14689999999999999 999999999999 999998
Q ss_pred HHH-HHHHHHHHHHHHhCCcEEEEEecCCcchHHhcC
Q psy10223 194 LST-YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFL 229 (606)
Q Consensus 194 ~~~-~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~ 229 (606)
.+. ..+++.|++ .|.++|+++|+. ++.+++
T Consensus 674 ~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~ 704 (765)
T 1ewq_A 674 VAIATAVAEALHE----RRAYTLFATHYF--ELTALG 704 (765)
T ss_dssp HHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC
T ss_pred HHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh
Confidence 875 567777765 378999999974 445554
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-17 Score=158.85 Aligned_cols=168 Identities=15% Similarity=0.095 Sum_probs=110.3
Q ss_pred eeEEeeEE-EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccC---eEEEEcCCCCCCCCCCH
Q psy10223 41 LILKDISL-EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQT---TCGYVNHRTDLIPSLTV 116 (606)
Q Consensus 41 ~iL~~vs~-~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~---~i~yv~q~~~~~~~lTV 116 (606)
+.|+++.+ .+++|++++|+||||||||||++.|++... +..|.+.+.+.+......+. .+++..|+.... .+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 46788875 899999999999999999999999997654 33456655443322111100 011111100000 0000
Q ss_pred HHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCC--C
Q psy10223 117 EQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV--LLLLDEPTVNL--D 192 (606)
Q Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~--llllDEPTsgL--D 192 (606)
++.....++ . .......|.++.++...+.+...+|+ ++++||||+++ |
T Consensus 88 ------------------------~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d 139 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-D---QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK 139 (235)
T ss_dssp ------------------------EECCC-----C---TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC
T ss_pred ------------------------EeccccccC-c---eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC
Confidence 000000000 0 01123459999998888888888999 99999999887 9
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCc-------chHHhcCCeEEEEcCC
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPR-------SDVLPFLDRTAYLCLG 238 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~-------~~i~~~~D~v~vL~~G 238 (606)
+..+.++++.|++++++.|.|+|+++|... ..+.++||+|++|++.
T Consensus 140 ~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 140 PAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 999999999999998878999999998762 3488899999999864
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-16 Score=161.31 Aligned_cols=151 Identities=12% Similarity=0.097 Sum_probs=108.9
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~ 128 (606)
-+++|++++|+||||||||||++.|++... .|.+. .|.+.. .+..+.|+..++. ..+...-...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~---~g~~~-~g~~~~---~~~~v~~~~~e~~------~~~~~~r~~~~g- 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDL-LEVGEL---PTGPVIYLPAEDP------PTAIHHRLHALG- 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCT-TCCCCC---CCCCEEEEESSSC------HHHHHHHHHHHH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh---cCCCc-CCCccC---CCccEEEEECCCC------HHHHHHHHHHHH-
Confidence 488999999999999999999999998542 35442 344322 1346788776652 221111111111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH---HHHHHHHH
Q psy10223 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV--NLDPLS---TYLIVSML 203 (606)
Q Consensus 129 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs--gLD~~~---~~~i~~~L 203 (606)
..... .+.+++++.+++.+..++.+..||+||++++ ++++.+|+++++||||+ ++|... ..++++.|
T Consensus 92 -~~~~~----~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L 163 (279)
T 1nlf_A 92 -AHLSA----EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM 163 (279)
T ss_dssp -TTSCH----HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred -hhcCh----hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence 11222 2356678888888888889999999998875 68888999999999999 999854 48889999
Q ss_pred HHHHHhCCcEEEEEecCC
Q psy10223 204 SSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~ 221 (606)
++++++.|+|||+++|..
T Consensus 164 ~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 164 EAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp HHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHcCCEEEEEecCC
Confidence 999877799999998864
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-17 Score=189.89 Aligned_cols=173 Identities=12% Similarity=0.133 Sum_probs=114.7
Q ss_pred EEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe
Q psy10223 13 YLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91 (606)
Q Consensus 13 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~ 91 (606)
.+++ +..|+..... . +++.+++|+++. ++|++++|+||||||||||||+|+|.......| ..
T Consensus 577 ~i~i~~~rHP~le~~-------~---~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~ 639 (800)
T 1wb9_A 577 GIRITEGRHPVVEQV-------L---NEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SY 639 (800)
T ss_dssp CEEEEEECCTTHHHH-------C---SSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CC
T ss_pred CEEEEeccccEEEcc-------C---CCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cc
Confidence 4667 7777654210 0 235689999999 999999999999999999999999863201112 11
Q ss_pred CCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHH
Q psy10223 92 MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVI 171 (606)
Q Consensus 92 ~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsI 171 (606)
+... +..++++.| +++.+++.|++... .+.+|++++ +++.
T Consensus 640 vpa~--~~~i~~~~~---i~~~~~~~d~l~~~----------------------------------~stf~~e~~-~~~~ 679 (800)
T 1wb9_A 640 VPAQ--KVEIGPIDR---IFTRVGAADDLASG----------------------------------RSTFMVEMT-ETAN 679 (800)
T ss_dssp BSSS--EEEECCCCE---EEEEEC---------------------------------------------CHHHHH-HHHH
T ss_pred cchh--cccceeHHH---HHhhCCHHHHHHhh----------------------------------hhhhhHHHH-HHHH
Confidence 1111 123454443 55666666655321 123455554 4555
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLI-VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i-~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+...+++|++++||||++|+|+.....+ ..+++.+.++.|.++|+++|+. ++.+++|++..+.+|++....
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEE
Confidence 5567899999999999999999887775 7788888764589999999985 456789988777788776554
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-18 Score=178.49 Aligned_cols=163 Identities=17% Similarity=0.151 Sum_probs=101.1
Q ss_pred eEEee-EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC-CCCe----eE-EEECCEeCCcccccCeEEEEcCCCCCCCCC
Q psy10223 42 ILKDI-SLEVRPGEVLAVLGSKGSGKRALLEVISRRSS-GTTR----GE-IILDGTPMSPQLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 42 iL~~v-s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~-~~~~----G~-I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l 114 (606)
.|+++ ++.+++|++++|+||||||||||++.|++... .+.+ |. |++++.+.. .++++++++|...+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 45555 68999999999999999999999999999762 1333 66 777765431 12334555555443332
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh-------hCCCEEEEeCC
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV-------KDPVLLLLDEP 187 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~-------~~p~llllDEP 187 (606)
++.||+.+.. . .-|.+++|++.++++++ .+|+++++|||
T Consensus 195 ~v~~ni~~~~------~----------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ 240 (349)
T 1pzn_A 195 EVLKHIYVAR------A----------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL 240 (349)
T ss_dssp HHGGGEEEEE------C----------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS
T ss_pred HHhhCEEEEe------c----------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc
Confidence 3333332210 0 01455667777777776 68999999999
Q ss_pred CCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 188 TVNLDPLS------------TYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 188 TsgLD~~~------------~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
|++||+.. ..++++.|++++++.+.|+|+++|... ....+++.......|+++.+
T Consensus 241 ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~ 307 (349)
T 1pzn_A 241 TSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAH 307 (349)
T ss_dssp STTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCT
T ss_pred hHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEee
Confidence 99999852 467778888888878999999988643 33334444455555554433
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-18 Score=165.97 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=103.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
||+++|+||||||||||+++|+|..+ .+| |.++|.+... ...++.++|++|+. .... +++ +++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~--~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~~-- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK--SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGLE-- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH--HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc--cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hccccc--
Confidence 78999999999999999999999875 468 8888877643 23578899999875 1111 111 011000
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRV-VIGT---QLVKDPVLLLLDE--PTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRv-sIa~---aL~~~p~llllDE--PTsgLD~~~~~~i~~~L~~ 205 (606)
.+. ....+...++...+|+|||+++ ++++ |++.+|+++++|| |+..+|......+.++|
T Consensus 68 ~~~-------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l-- 132 (189)
T 2i3b_A 68 PPP-------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL-- 132 (189)
T ss_dssp CCS-------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH--
T ss_pred CCc-------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH--
Confidence 000 0001123444567999999988 4444 5799999999999 89999987655555444
Q ss_pred HHHhCCcEEE--EEe-cCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 206 YAKRKSRAVL--LTM-EKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 206 l~~~~g~tii--~t~-h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
+....+++ ++. |... ..+.|+|..+.+|+++.-
T Consensus 133 --~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 --STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp --HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred --hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 33333343 222 5432 457788888888888764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-17 Score=185.62 Aligned_cols=171 Identities=18% Similarity=0.262 Sum_probs=112.6
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC------cccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------PQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~------~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
+.++. ++|+|||||||||||++|+|+..+..+|.|+++|.++. ...+++.++|++|+..+++.+||+|++.
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEIN 119 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHH
Confidence 44544 99999999999999999999976236899999998852 1246778999999999999999999998
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHH
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP------TVNLDPLS 195 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP------TsgLD~~~ 195 (606)
++........ .++| ++++.++.+....|+++++||| |+|||+..
T Consensus 120 ~~~~~~~~~~---------------------------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~ 169 (608)
T 3szr_A 120 KAQNAIAGEG---------------------------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADI 169 (608)
T ss_dssp HHHHHHHCSS---------------------------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSH
T ss_pred HHHHHhcCCc---------------------------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHH
Confidence 7653210000 0111 1222233333458999999999 99999999
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEecCCc---ch---HHhc-----CCeEEEEcCCeEEEecChhHHHH
Q psy10223 196 TYLIVSMLSSYAKR-KSRAVLLTMEKPR---SD---VLPF-----LDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 196 ~~~i~~~L~~l~~~-~g~tii~t~h~~~---~~---i~~~-----~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.++++++.++ .+.++++++|... .+ +.+. ...|.|+.++..+..|+.+++.+
T Consensus 170 ~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 170 GYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred HHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 99999999997543 3556666666432 01 2222 24588999998887777655444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.1e-15 Score=143.48 Aligned_cols=154 Identities=16% Similarity=0.103 Sum_probs=100.9
Q ss_pred eEEeeE-EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDIS-LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs-~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.|+++. +-+++|++++|+||||||||||++.|++ . .. +. +.|+..+.. .+.. .+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~-~~----------------v~~i~~~~~----~~~~-~~ 62 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SG-KK----------------VAYVDTEGG----FSPE-RL 62 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HC-SE----------------EEEEESSCC----CCHH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cC-Cc----------------EEEEECCCC----CCHH-HH
Confidence 466665 4799999999999999999999999998 2 11 22 233332221 1111 11
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCHH---
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE--HRRVVIGTQLVKD-PVLLLLDEPTVNLDPL--- 194 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe--rqRvsIa~aL~~~-p~llllDEPTsgLD~~--- 194 (606)
.-... . ..... +++++.+ .+...|+++ ++++..+++++.+ |+++++||||+++|+.
T Consensus 63 ~~~~~-~--~~~~~-------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~ 124 (220)
T 2cvh_A 63 VQMAE-T--RGLNP-------EEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENR 124 (220)
T ss_dssp HHHHH-T--TTCCH-------HHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGS
T ss_pred HHHHH-h--cCCCh-------HHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCch
Confidence 11111 0 01111 1122222 233455554 5688888899986 9999999999999973
Q ss_pred -----HHHHHHHHHHHHHHhCCcEEEEEecCCcc------------hHHhcCCeEEEEcCC
Q psy10223 195 -----STYLIVSMLSSYAKRKSRAVLLTMEKPRS------------DVLPFLDRTAYLCLG 238 (606)
Q Consensus 195 -----~~~~i~~~L~~l~~~~g~tii~t~h~~~~------------~i~~~~D~v~vL~~G 238 (606)
...++++.|++++++.+.++|+++|.... .+...+|++++|++.
T Consensus 125 ~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 125 SGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 33557777888888778999998886432 467899999999864
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=135.27 Aligned_cols=93 Identities=11% Similarity=0.140 Sum_probs=74.1
Q ss_pred cccCCCCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC
Q psy10223 155 RRNISELTPSEHRRVVIGTQLVK----DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD 230 (606)
Q Consensus 155 ~~~v~~LSgGerqRvsIa~aL~~----~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D 230 (606)
++.+..||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++++ +.++|+++|++ .+.+.+|
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad 134 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANAD 134 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCS
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCC
Confidence 45577899999999999999974 4699999999999999999999999999864 35777777874 5788999
Q ss_pred eEEEEc--CCe-EEEecChhHHHH
Q psy10223 231 RTAYLC--LGD-LIYAGPTRLMLE 251 (606)
Q Consensus 231 ~v~vL~--~G~-~v~~G~~~~~~~ 251 (606)
+++.+. +|. -+...+.++..+
T Consensus 135 ~i~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 135 KIIGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEEEecCCEEEEEEEEcHHHHH
Confidence 998664 564 244455555444
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-15 Score=161.49 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=88.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~ 128 (606)
...+|++++|+|||||||||||++|+|..++...|.|...+.++. ...+...+++.|.......++..+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~~~---------- 187 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGFSE---------- 187 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCHHH----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hhhhccccceeeeeeccccCCHHH----------
Confidence 678999999999999999999999999876222566654433332 122333344555432211122111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q psy10223 129 GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208 (606)
Q Consensus 129 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~ 208 (606)
+||++|..+|+++++|||| |..+.. .+.+.+.
T Consensus 188 -----------------------------------------~La~aL~~~PdvillDEp~---d~e~~~----~~~~~~~ 219 (356)
T 3jvv_A 188 -----------------------------------------ALRSALREDPDIILVGEMR---DLETIR----LALTAAE 219 (356)
T ss_dssp -----------------------------------------HHHHHTTSCCSEEEESCCC---SHHHHH----HHHHHHH
T ss_pred -----------------------------------------HHHHHhhhCcCEEecCCCC---CHHHHH----HHHHHHh
Confidence 9999999999999999999 666544 3344444
Q ss_pred hCCcEEEEEecCCcchHHhcCCeEEEEcCC
Q psy10223 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLG 238 (606)
Q Consensus 209 ~~g~tii~t~h~~~~~i~~~~D~v~vL~~G 238 (606)
.|.++++|+|... ..+.+||++.|..|
T Consensus 220 -~G~~vl~t~H~~~--~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 220 -TGHLVFGTLHTTS--AAKTIDRVVDVFPA 246 (356)
T ss_dssp -TTCEEEEEESCSS--HHHHHHHHHHTSCH
T ss_pred -cCCEEEEEEccCh--HHHHHHHHhhhcCc
Confidence 5899999999764 44889999998665
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-16 Score=167.00 Aligned_cols=151 Identities=12% Similarity=0.156 Sum_probs=89.9
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~~ 113 (606)
.++++.+++|+|+.| +|+|+||||||||+++|+|... +..| .+|..... ...+..++++.|++.+++.
T Consensus 20 ~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-~~~~---~~~~~~~~~~t~~~~~i~~v~q~~~~~~~ 89 (418)
T 2qag_C 20 QVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDL-YSPE---YPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89 (418)
T ss_dssp CTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-CCCC---CCSCC-----CCEEEEEECC------CEE
T ss_pred eECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-CCCC---CCCcccCCccceeeeeEEEEEecCCcccc
Confidence 344567999999998 9999999999999999999865 2223 12222211 1123468899999888889
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCC---EEEEeCCC-C
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPV---LLLLDEPT-V 189 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~---llllDEPT-s 189 (606)
+||.||+.+..... .......+.+.++ ..++.+++||++||++++.+|+ ++++|||| .
T Consensus 90 Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~ 151 (418)
T 2qag_C 90 LTIVDTPGFGDAVD------NSNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGH 151 (418)
T ss_dssp EEEEECC-----------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CC
T ss_pred eeeeechhhhhhcc------chhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCccc
Confidence 99999988764321 0011111222221 1344567789999999999999 99999999 6
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 190 NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 190 gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
|||+... +.++.+.. +..+|++++.
T Consensus 152 ~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 152 GLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp SCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred CCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 9999873 44455542 5667766665
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-17 Score=158.74 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=93.2
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-cccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
.+++|++++|+||||||||||+|+|+|. +..|.|.++|.++... ..+..++|++|+.. +.+||.+++.+.+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHH
Confidence 3789999999999999999999999997 3469999998764221 11233566666543 4578888887654311
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhh--cccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVA--RRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
...+. ...++.++..+++.... +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.++.
T Consensus 80 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 80 AKEGY-----FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHTSC-----EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred hccCC-----eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 00000 00011111112222222 4456789999999999999999999876 688888777777766
Q ss_pred HH
Q psy10223 206 YA 207 (606)
Q Consensus 206 l~ 207 (606)
+.
T Consensus 147 l~ 148 (191)
T 1zp6_A 147 LG 148 (191)
T ss_dssp CG
T ss_pred cC
Confidence 54
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.7e-17 Score=163.20 Aligned_cols=147 Identities=17% Similarity=0.194 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHH---cCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSI 128 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~---g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~ 128 (606)
++++++|+||||||||||+|+|+ |... +..|+|.++|.+... .....+.+++|+..++|..++.+++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 9876 677888877654321 122234455677778888999999987543100
Q ss_pred -----CCCCCHHHHHHHHHHHHH--HcC------------CchhhcccCCCCCHHHHHHHHHHHHH-hhCCCEEEEe---
Q psy10223 129 -----GPQVSRYVRNARIRQVLA--DLA------------LSNVARRNISELTPSEHRRVVIGTQL-VKDPVLLLLD--- 185 (606)
Q Consensus 129 -----~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~v~~LSgGerqRvsIa~aL-~~~p~llllD--- 185 (606)
..+.++.. .+++.+.+ .++ +....++++..||| |+ +++ +.+|+++++|
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 00111111 12222221 223 34456778889999 66 677 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 186 -EPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 186 -EPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
|||+|||..+...+.+.|+++.++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-17 Score=156.78 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=97.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC-----CCCCeeEEEECCEeCCcccccCeEEEEcCCCCC----C
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS-----SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDL----I 111 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-----~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~----~ 111 (606)
.+|++ +.+++|+.++|+|+||||||||++.|+|.. . +..|.+...+.-. +...+-.+ +.+.+ .
T Consensus 16 ~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~-~~~G~~~~~~~~~----~~~~~~l~-Dt~G~~~~~~ 87 (210)
T 1pui_A 16 PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS-KTPGRTQLINLFE----VADGKRLV-DLPGYGYAEV 87 (210)
T ss_dssp SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEE----EETTEEEE-ECCCCC----
T ss_pred CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc-CCCccceeeEEEE----ecCCEEEE-ECcCCccccc
Confidence 46777 789999999999999999999999999976 3 4556554321100 00011111 11110 0
Q ss_pred CCCC---HHHHHHHHHHc-c----------CCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHH-HHHHHHH
Q psy10223 112 PSLT---VEQTLYYAAHL-S----------IGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRR-VVIGTQL 175 (606)
Q Consensus 112 ~~lT---V~e~l~f~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqR-vsIa~aL 175 (606)
+.-. .+..+...... + .....+. ..+++.++++..++... ...++..+|+||||| +..++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~ 165 (210)
T 1pui_A 88 PEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREA 165 (210)
T ss_dssp --CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHH
Confidence 1100 11122221110 0 0001122 22345566777777654 366788899999999 8999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
+.+|+++++|||||++|.....++.+.|.++.++
T Consensus 166 ~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 166 VLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988654
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-16 Score=153.53 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=99.9
Q ss_pred eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCH----HHHH
Q psy10223 46 ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTV----EQTL 120 (606)
Q Consensus 46 vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV----~e~l 120 (606)
-.-..++|++++|+||||||||||+|+|+|..++ ...|.|.+.+.+.... .++.++|++|++..|+.+++ .|++
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 3446899999999999999999999999998863 3679999988765432 34568899998665555544 2332
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.+..... +.| +++ ++.++..+++++|| ||+.++.++.
T Consensus 88 ~~~~~~y--------------------------------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~ 124 (219)
T 1s96_A 88 EVFGNYY--------------------------------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIR 124 (219)
T ss_dssp EETTEEE--------------------------------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHH
T ss_pred HHHhccC--------------------------------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHH
Confidence 2211100 001 111 23334457999999 9999999999
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHHHHH
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~f~~ 255 (606)
+.+. .+.+|++++|++ +++.+ |+ +.+| .++++++...+..
T Consensus 125 ~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 125 QKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 8875 378999998864 34433 43 6777 5788887766543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.7e-18 Score=166.28 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=110.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQV 132 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~ 132 (606)
|++++|+||||||||||+|+|++. .+|.+.++|.++... ...++++|.....+.+|+.+++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999973 458898888654211 2345566655444556788887765432100000
Q ss_pred CHHHHHHHHHHHHHHcCCchhhcccCCCC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q psy10223 133 SRYVRNARIRQVLADLALSNVARRNISEL--TPSEHRRVVIGT------QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204 (606)
Q Consensus 133 ~~~~~~~~v~~~l~~lgL~~~~~~~v~~L--SgGerqRvsIa~------aL~~~p~llllDEPTsgLD~~~~~~i~~~L~ 204 (606)
..+++.+. .....+..+.+ |+|++||+.++. +++.+|+...+|+ +||+..... .+.++
T Consensus 75 ---------~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~ 140 (189)
T 2bdt_A 75 ---------DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFE 140 (189)
T ss_dssp ---------EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHH
T ss_pred ---------cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHh
Confidence 00011010 01001112233 888888888888 8999999888884 899988888 88888
Q ss_pred HHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 205 ~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.+.+ .+.++|.++|...+++.+.||+|+ ++|+++..|+++-+
T Consensus 141 ~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 141 SKGI-DERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HTTC-CTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred hcCC-CccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 7753 467888888862457899999998 99999999987643
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-14 Score=150.04 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=91.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC-CEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD-GTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~-G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
-+++++.. .+|++++|+||||||||||+|+|+|....+.+|+|.++ |.... ...+..+++++|+..++++.||+|+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh-
Confidence 35566654 48999999999999999999999998752567999987 65543 2345679999999889999999883
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL 175 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL 175 (606)
. + ...+..+..+++.++++.+++.+..+..+.++| ||+||++||+++
T Consensus 282 --~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 --G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp --C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred --h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 1 134555666778889999999999999999999 999999999864
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-15 Score=159.47 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=110.0
Q ss_pred cceeeEEeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-. .. ......++.++|++|++.+++.+|
T Consensus 26 ~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l---~g~~~-~~--~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 26 DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF---EGEPA-TH--TQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc---cCCcC-CC--CCccceEeeEEEEeecCccccccc
Confidence 3445 9999999999999 99999999999999999999841 12111 00 111223457999999999888999
Q ss_pred HHHHHHHHHHccCCCCCCHH--------HHHHHHHHHHHHc-CCch----hhcccC-----------CCCCHHHHHHHHH
Q psy10223 116 VEQTLYYAAHLSIGPQVSRY--------VRNARIRQVLADL-ALSN----VARRNI-----------SELTPSEHRRVVI 171 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~v-----------~~LSgGerqRvsI 171 (606)
|.||+.++.. .... ....+.++.|... ++.. ..|.++ ++|+-.+ +.|
T Consensus 99 v~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 99 IVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp EEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred hhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 9999876432 1111 1233455566554 4431 123321 3677666 789
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEEec
Q psy10223 172 GTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSS-YAKRKSRAVLLTME 219 (606)
Q Consensus 172 a~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~-l~~~~g~tii~t~h 219 (606)
+++|..+++++++|||+..|.+.....+.+.+++ +. ..|..|+.++.
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~ 217 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPT 217 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC-
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCC
Confidence 9999999999999999999999999999999997 54 46777776543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-17 Score=178.01 Aligned_cols=169 Identities=13% Similarity=0.067 Sum_probs=100.8
Q ss_pred eEEeeEEEEeC--CeEEEEEcCCCccHHHHHHHHHcCCCCCCe----eEEEECCEeCCcccccCeEEEEcCCCCCCCCCC
Q psy10223 42 ILKDISLEVRP--GEVLAVLGSKGSGKRALLEVISRRSSGTTR----GEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 42 iL~~vs~~v~~--Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~----G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lT 115 (606)
+.+.|++.|++ |+.++|+||||||||||+|+|+|+.+ +.+ |+|.+++... ..+..++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-TTSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-CEEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-CCcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 45679999999 99999999999999999999999987 666 6655421100 0000111112
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh-hCCCEEEEeC---CC---
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV-KDPVLLLLDE---PT--- 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~-~~p~llllDE---PT--- 188 (606)
. +++.+.... .......+.+-+. ++..+..++.+..+|+|++||..+++++. .+|++++||| |+
T Consensus 223 ~-~~I~~~~q~-------~~~~~~t~~~nl~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~ 293 (365)
T 1lw7_A 223 Y-PQMALGHQR-------YIDYAVRHSHKIA-FIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDD 293 (365)
T ss_dssp H-HHHHHHHHH-------HHHHHHHHCSSEE-EESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC----
T ss_pred H-HHHHHHHHH-------HHHHHHhccCCEE-EEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccC
Confidence 2 223322110 0000000000000 01112223334456677788888888775 5999999999 65
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEE
Q psy10223 189 ---VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYL 235 (606)
Q Consensus 189 ---sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL 235 (606)
.++|+..+..+.+.|+++.++.+.+++++.| | .+..+++|++.++
T Consensus 294 g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde-~-~~~~r~~~~i~~i 341 (365)
T 1lw7_A 294 GLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIES-P-SYLDRYNQVKAVI 341 (365)
T ss_dssp -------CCSHHHHHHHHHHHHHGGGCCCEEEEC-S-SHHHHHHHHHHHH
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCC-C-CHHHHHHHHHHHH
Confidence 5899999999999999887655778888765 4 2555666655444
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.5e-13 Score=130.66 Aligned_cols=153 Identities=17% Similarity=0.188 Sum_probs=87.8
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc--CCCC----CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR--RSSG----TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g--~~~~----~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
+-+++|++++|+||||||||||++.|++ ..++ ...|.+.+++... + ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~-----------------~----~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT-----------------F----RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC-----------------C----CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC-----------------c----CHHHHHH
Confidence 5689999999999999999999999998 3431 1235555544321 0 1111111
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH----
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR-VVIGTQLV--KDPVLLLLDEPTVNLDPL---- 194 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR-vsIa~aL~--~~p~llllDEPTsgLD~~---- 194 (606)
...++ .... +++++.+. .....+..+..+ +.-+..++ .+|+++++|||++.+|+.
T Consensus 78 ~~~~~----g~~~-------~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~ 139 (243)
T 1n0w_A 78 VAERY----GLSG-------SDVLDNVA-------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGR 139 (243)
T ss_dssp HHHHT----TCCH-------HHHHHTEE-------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC------
T ss_pred HHHHc----CCCH-------HHHhhCeE-------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCC
Confidence 11111 0111 01111111 112344444332 22233333 589999999999999975
Q ss_pred ---H-----HHHHHHHHHHHHHhCCcEEEEEecCCcch------------------HHhcCCeEEEEcCCe
Q psy10223 195 ---S-----TYLIVSMLSSYAKRKSRAVLLTMEKPRSD------------------VLPFLDRTAYLCLGD 239 (606)
Q Consensus 195 ---~-----~~~i~~~L~~l~~~~g~tii~t~h~~~~~------------------i~~~~D~v~vL~~G~ 239 (606)
. ..++++.|++++++.|.|||+++|...+. +...+|.+++|++|+
T Consensus 140 ~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 140 GELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEECS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 3 45677778888877799999998843211 233799999998753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-14 Score=154.03 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=100.4
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC-CcccccCeEEEEc-CCCCCCCCCCHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM-SPQLFQTTCGYVN-HRTDLIPSLTVEQTL 120 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~-~~~~~~~~i~yv~-q~~~~~~~lTV~e~l 120 (606)
++++|+.+++|++++|+||||||||||+|+|+|..+ +.+|.|.++|..- .....++.+++++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-TTSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-CCceEEEECCccccCccccCCEEEEeecCcccc----------
Confidence 399999999999999999999999999999999987 6889999998531 1122567789988 55421
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
+++++...|..|+.++..+|+.+++||++. .+..
T Consensus 234 ---------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~ 267 (361)
T 2gza_A 234 ---------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAY 267 (361)
T ss_dssp --------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHH
T ss_pred ---------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHH
Confidence 012223456667777778999999999985 2445
Q ss_pred HHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCe
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGD 239 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~ 239 (606)
+.|+.+. .+..|++.++|.. +....+||+..+.+|.
T Consensus 268 ~~l~~l~-~g~~~~l~t~H~~--~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 268 DFINVAA-SGHGGSITSCHAG--SCELTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHH-TTCCSCEEEEECS--SHHHHHHHHHHHHTTS
T ss_pred HHHHHHh-cCCCeEEEEECCC--CHHHHHHHHHHHHhcc
Confidence 5666664 3456778888864 4788899999888764
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-14 Score=154.04 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=97.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCC-eeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTT-RGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~-~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.+|++++ +++|++++|+|||||||||||++|+|..+ +. +|+|...|.++. ...+..+++++|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 3567766 79999999999999999999999999876 44 799977665553 23456677777741
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+|+. +..+ +.+|+++|..+|+++++|||+ |+.+...
T Consensus 191 ----------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~- 226 (372)
T 2ewv_A 191 ----------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET- 226 (372)
T ss_dssp ----------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH-
T ss_pred ----------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH-
Confidence 1111 1223 469999999999999999999 7766443
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
.++. + ..|.+++.|+|.. ++.+.+||++.|..
T Consensus 227 --~l~~-~-~~g~~vi~t~H~~--~~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 227 --ALRA-A-ETGHLVFGTLHTN--TAIDTIHRIVDIFP 258 (372)
T ss_dssp --HHHH-H-TTTCEEEECCCCC--SHHHHHHHHHHTSC
T ss_pred --HHHH-H-hcCCEEEEEECcc--hHHHHHHHHHHhcC
Confidence 3443 3 3578888888863 48888999877743
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-17 Score=171.42 Aligned_cols=163 Identities=13% Similarity=0.066 Sum_probs=103.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC-------CCCeeEEEECCEeCCcc------------------cccCeEEEE---
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS-------GTTRGEIILDGTPMSPQ------------------LFQTTCGYV--- 104 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~-------~~~~G~I~~~G~~~~~~------------------~~~~~i~yv--- 104 (606)
=++++|+|+||||||||||.|.|..+ .+..|+|.++|.++... .+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 36899999999999999999999862 15779999999876421 122335555
Q ss_pred cCCCCCCCCCCHHHHHHHHHHccCCCCC---CHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 105 NHRTDLIPSLTVEQTLYYAAHLSIGPQV---SRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 105 ~q~~~~~~~lTV~e~l~f~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
+|+..+++..+|.|+..++......... +......++..++..+++.+..++.. ++|+|||||+..+++++.+|++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl 162 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDV 162 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECccc
Confidence 4555555566666665432100000000 00000001112223345544444443 7999999999998999999998
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCC
Q psy10223 182 LLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLD 230 (606)
Q Consensus 182 lllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D 230 (606)
+ ||| .++.+.|+++. .+.+|++++|.+. ++..++|
T Consensus 163 ~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 163 A--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp C--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred C--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 7 998 67888888874 4789999999764 4444444
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-15 Score=158.59 Aligned_cols=169 Identities=19% Similarity=0.210 Sum_probs=103.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .....++++.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 479999999999999999999999999999998742 12232221 12223444444320 01111111100
Q ss_pred H--HHccCCCCCCHHHH--HHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 123 A--AHLSIGPQVSRYVR--NARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 123 ~--~~~~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
. +.. ...+..... .++++.++..++++ ++.+..+|+|++||+.+|++|+.+|.++++ +++|...+ +
T Consensus 216 i~~a~~--~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~ 285 (416)
T 1udx_A 216 IEGASE--GKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-E 285 (416)
T ss_dssp CCCGGG--SCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-H
T ss_pred ccchhh--hhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-H
Confidence 0 000 011221111 11122233334444 566778999999999999999999999999 99999877 5
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 199 IVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 199 i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
.++.+++..+..+.+++.++.+..+.+.++++.+
T Consensus 286 ~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 286 AVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 5555655555557777766655555666665543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.8e-15 Score=159.29 Aligned_cols=155 Identities=12% Similarity=0.140 Sum_probs=103.9
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------c--ccCeEEEEcCCCCCCCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------L--FQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~--~~~~i~yv~q~~~~~~~ 113 (606)
-+++|+.+++|++++|+|+||||||||+++|+|++. +.+|+|.++|.+.... . .|+.++|++|+..+++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 468999999999999999999999999999999986 5679999987665321 1 25579999999888899
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh-hCCC-EEEEeCCCCCC
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV-KDPV-LLLLDEPTVNL 191 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~-~~p~-llllDEPTsgL 191 (606)
+||++++.++..... .+ -+++..|+.+.......+| +|++.+++++. ..|+ +++..++|+|.
T Consensus 362 ~tV~e~l~~a~~~~~--Dv----------VLIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 362 SVIFDAIQAAKARNI--DV----------LIADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHHHTTC--SE----------EEECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHHhcCC--CE----------EEEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 999999998754210 00 0111122211111111122 47888888764 4563 55555588886
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
|.. +.++.+.+..+.|.++.+|-
T Consensus 426 ~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 426 NAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp HHH------HHHHHHHHHTCCSEEEEECG
T ss_pred HHH------HHHHHHHhhcCCCEEEEEcC
Confidence 554 33444444457777777773
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-14 Score=136.64 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=65.9
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+.+++++|+++++||+++|+||||||||||+|+|+|.. +.+|+|.++|.++......+. +++|+..++ .+||.|
T Consensus 19 ~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 19 KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSCTT
T ss_pred HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeeeeeccCCC--cceeccccc-cCCcHH
Confidence 457899999999999999999999999999999999988 468999999987742111122 788988888 899999
Q ss_pred HHHH
Q psy10223 119 TLYY 122 (606)
Q Consensus 119 ~l~f 122 (606)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-14 Score=147.01 Aligned_cols=145 Identities=13% Similarity=0.133 Sum_probs=101.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cc--cCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LF--QTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~--~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.++|++++|+||||||||||++.|+|..+ +.+|+|.+.|.+.... .+ +..+.+++|...+.|.+||+|++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 36899999999999999999999999987 6789999999886421 11 23466999999999999999999
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
.++..... .. -+++..|+.+..+....+|| .|++++..++.++++|.+|. .+++
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~ 258 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIV 258 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHH
T ss_pred HHHHhccc--hh----------hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHH
Confidence 87643110 00 01222343333333333333 38899988888888885554 3555
Q ss_pred HHHHHHHHhCCcEEEEEecCC
Q psy10223 201 SMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 201 ~~L~~l~~~~g~tii~t~h~~ 221 (606)
+.++.+.+..+.|+|+.+|.+
T Consensus 259 ~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHhcCCCEEEEeCcC
Confidence 666777666788888888853
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=135.69 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=67.8
Q ss_pred ccCCCCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhc
Q psy10223 156 RNISELTPSEHRRV------VIGTQLVKD-PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 156 ~~v~~LSgGerqRv------sIa~aL~~~-p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
.++..||||||||+ ++|++++.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||+++|++ ++...
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~ 351 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDV 351 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhh
Confidence 45678999999988 567888999 999999999999999999999999998742 46888999985 46889
Q ss_pred CCeEEEEcC
Q psy10223 229 LDRTAYLCL 237 (606)
Q Consensus 229 ~D~v~vL~~ 237 (606)
+|++++|++
T Consensus 352 ~d~~~~l~k 360 (371)
T 3auy_A 352 ADVIINVKK 360 (371)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999999973
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-15 Score=159.92 Aligned_cols=163 Identities=9% Similarity=0.066 Sum_probs=109.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc-------cccCeEEEEcCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ-------LFQTTCGYVNHRTDLI 111 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~-------~~~~~i~yv~q~~~~~ 111 (606)
.+.+|+++|+++++|++++|+||||||||||+++|+|... +.+|+|.+.|.++... ..+..+++++|++.++
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAF 119 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-hCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccc
Confidence 3568999999999999999999999999999999999876 5779999999876421 2355789999998776
Q ss_pred CCCC------------HHHHHHHHH---------------------H--cc-----CCCCCCHHHHH---HHHHHHHHHc
Q psy10223 112 PSLT------------VEQTLYYAA---------------------H--LS-----IGPQVSRYVRN---ARIRQVLADL 148 (606)
Q Consensus 112 ~~lT------------V~e~l~f~~---------------------~--~~-----~~~~~~~~~~~---~~v~~~l~~l 148 (606)
+..+ +.|.+...- . .. .... ...+.+ +.+.+....+
T Consensus 120 ~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~-~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 120 IRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG-AGDELQGIKKGIFELADMI 198 (337)
T ss_dssp EECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC-C------CCTTHHHHCSEE
T ss_pred cccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC-CcccHHHHHHHHhccccEE
Confidence 5322 233321100 0 00 0000 000000 0111111122
Q ss_pred CCchhhcc-cCCCCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q psy10223 149 ALSNVARR-NISELTPSEHRRVVIGTQLVK------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208 (606)
Q Consensus 149 gL~~~~~~-~v~~LSgGerqRvsIa~aL~~------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~ 208 (606)
.+ +..|. ....+|+|++|++..+.+++. +|++++ ||++|.....++++.|.++.+
T Consensus 199 vl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22 12232 234679999999999999987 688887 999999999999999988754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-14 Score=146.29 Aligned_cols=121 Identities=10% Similarity=0.128 Sum_probs=85.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE---CCEeCCcc--ccc-CeEEEEcCCCCCC-----CCCCHHH
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGTPMSPQ--LFQ-TTCGYVNHRTDLI-----PSLTVEQ 118 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~---~G~~~~~~--~~~-~~i~yv~q~~~~~-----~~lTV~e 118 (606)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++.+.. ..+ +.++|++|.+.+. +.+|+ |
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~-~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE-LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC-CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh-CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 3579999999999999999999999 776 78899999 88876532 122 3589999998553 78999 8
Q ss_pred HH--HHH----HHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHH
Q psy10223 119 TL--YYA----AHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGT 173 (606)
Q Consensus 119 ~l--~f~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~ 173 (606)
++ .|+ ..++........+...+++++++.++|.+ ..+++++.|||.++|++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 443 10111110111223457899999999986 788999999999999999987
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-13 Score=127.48 Aligned_cols=114 Identities=16% Similarity=0.214 Sum_probs=75.8
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
++.+++|+.++|.||||+|||||+++|++... +.+|. .+.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~---------------~~~~----------~~~~~~~~~~--- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-EKKGI---------------RGYF----------FDTKDLIFRL--- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-HHSCC---------------CCCE----------EEHHHHHHHH---
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-HHcCC---------------eEEE----------EEHHHHHHHH---
Confidence 35567899999999999999999999998763 22221 0111 2233322111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPLSTYLIVSMLSS 205 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~ 205 (606)
......-.. . -....+.+|++|++|||++ ++|+..+..+.+++..
T Consensus 83 ---------------~~~~~~~~~-----------~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 83 ---------------KHLMDEGKD-----------T--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp ---------------HHHHHHTCC-----------S--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred ---------------HHHhcCchH-----------H--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 111110000 0 1122245999999999995 9999999999999988
Q ss_pred HHHhCCcEEEEEecCCcch
Q psy10223 206 YAKRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 206 l~~~~g~tii~t~h~~~~~ 224 (606)
..+ .|+++|+|+|++.++
T Consensus 129 ~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 129 RYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHH-TTCEEEEECCCCSCC
T ss_pred HHH-cCCCEEEEcCCChhH
Confidence 764 578999999988765
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-15 Score=140.45 Aligned_cols=136 Identities=11% Similarity=0.101 Sum_probs=84.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCCCCC---eeEEEECCEeCC------ccccc-CeEE----EEcCCCCCCCCCCHHHH
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSSGTT---RGEIILDGTPMS------PQLFQ-TTCG----YVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~~~~---~G~I~~~G~~~~------~~~~~-~~i~----yv~q~~~~~~~lTV~e~ 119 (606)
++++|+|+||||||||++.|+|.+. +. .|.|.++|.++. ...+| +.++ +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-
Confidence 5899999999999999999999876 44 799999998742 12344 3455 788876554 100
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHH-cCCchhhccc-CCCCCHHHHHHHHHHHHHhhCCCEE-------EEeCCCCC
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLAD-LALSNVARRN-ISELTPSEHRRVVIGTQLVKDPVLL-------LLDEPTVN 190 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~-v~~LSgGerqRvsIa~aL~~~p~ll-------llDEPTsg 190 (606)
. .. +....+.++++. +. . .|+. +.+||||||||++|||+++.+|++. .-|.|..+
T Consensus 77 ---------~---~~-~~~a~l~~~i~~~l~--g-~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~ 140 (171)
T 2f1r_A 77 ---------V---SE-EEGNDLDWIYERYLS--D-YDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG 140 (171)
T ss_dssp ---------C---CH-HHHTCHHHHHHHHTT--T-CSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred ---------C---Ch-hhhhCHHHHHHhhCC--C-CCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence 0 01 111134556655 42 1 2332 3469999999999999999999873 23454322
Q ss_pred ---CCHHHHHHHHHHHHHHHHhCC
Q psy10223 191 ---LDPLSTYLIVSMLSSYAKRKS 211 (606)
Q Consensus 191 ---LD~~~~~~i~~~L~~l~~~~g 211 (606)
+|......+.+.+.+..+++|
T Consensus 141 ~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 141 HKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcccCcccHHHHHHHHHHHHhccC
Confidence 344456677888877766654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-12 Score=120.63 Aligned_cols=98 Identities=20% Similarity=0.370 Sum_probs=71.1
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee--EEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG--EIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G--~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e 118 (606)
.+|+++ +|+.++|+||||||||||+++|++... + +| .+.+++.+.. ..
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~~-----------------~~------ 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASMP-----------------LT------ 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTSC-----------------CC------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHhh-----------------HH------
Confidence 456666 899999999999999999999999764 2 34 3333322111 00
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYL 198 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~ 198 (606)
+++.+|+++++|||++ +|...+..
T Consensus 79 -------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~ 102 (149)
T 2kjq_A 79 -------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQAL 102 (149)
T ss_dssp -------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHH
T ss_pred -------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHH
Confidence 2356899999999998 66555888
Q ss_pred HHHHHHHHHHhCCcE-EEEEecCCcchH
Q psy10223 199 IVSMLSSYAKRKSRA-VLLTMEKPRSDV 225 (606)
Q Consensus 199 i~~~L~~l~~~~g~t-ii~t~h~~~~~i 225 (606)
+.+++..+.++ |++ +|+++|.+.+++
T Consensus 103 l~~li~~~~~~-g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 103 LFSIFNRFRNS-GKGFLLLGSEYTPQQL 129 (149)
T ss_dssp HHHHHHHHHHH-TCCEEEEEESSCTTTS
T ss_pred HHHHHHHHHHc-CCcEEEEECCCCHHHc
Confidence 99999988764 666 888888665443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.1e-11 Score=130.83 Aligned_cols=63 Identities=13% Similarity=-0.027 Sum_probs=48.8
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHhCCcEEEEEecCC--c----------------chHH
Q psy10223 177 KDPVLLLLDEPTVNLDPLST------------YLIVSMLSSYAKRKSRAVLLTMEKP--R----------------SDVL 226 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~------------~~i~~~L~~l~~~~g~tii~t~h~~--~----------------~~i~ 226 (606)
.+|+++++||||+.+|+... .++++.|++++++.|.|||+++|.. . ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 47999999999999996533 6788999999988899999999861 1 2356
Q ss_pred hcCCeEEEEcCCe
Q psy10223 227 PFLDRTAYLCLGD 239 (606)
Q Consensus 227 ~~~D~v~vL~~G~ 239 (606)
..+|.+++|++|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.25 E-value=9.5e-12 Score=134.90 Aligned_cols=77 Identities=13% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 158 ISELTPSEHRRVVIGTQLV----KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL~----~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+ .+.++|+++|++ ...+.||+++
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~ 407 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALV 407 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEE
Confidence 4569999999999999999 57999999999999999999999999998864 378899999973 5678899999
Q ss_pred EEcC
Q psy10223 234 YLCL 237 (606)
Q Consensus 234 vL~~ 237 (606)
.+..
T Consensus 408 ~~~~ 411 (430)
T 1w1w_A 408 GVYR 411 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9963
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-13 Score=139.71 Aligned_cols=129 Identities=15% Similarity=0.135 Sum_probs=87.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHH----c
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAH----L 126 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~----~ 126 (606)
+++.+++|.|++|||||||.+.|++.+. + .| .. ++.+.+|+||+.+++. ++++++.+... +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-~-~g----------~~--~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-E-KY----------GG--EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-H-HH----------GG--GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-h-cC----------CC--CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 5789999999999999999999998875 2 12 01 3446666999988865 88888877631 1
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc------h--hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALS------N--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLS 195 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~------~--~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~ 195 (606)
. ..+.+.........+.++.+... . ....+-..+||||+||+++|++...+|+|+|+|||++++|+..
T Consensus 94 ~-~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 Q-GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp S-SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred h-hccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 1 00111111234455666666432 1 1233447899999999999733322999999999999999864
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.1e-12 Score=131.02 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=77.1
Q ss_pred EEEEcCCCccHHHHHHHHHc-CCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS 133 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g-~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~ 133 (606)
++|.||||+|||||+++|++ +.. +..|++.++|.+... ...+..+++++|.+.+.-..+ + .....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHh--h----------cCCcc
Confidence 89999999999999999999 444 677999999876542 122456778877654311100 0 00001
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q psy10223 134 RYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213 (606)
Q Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~t 213 (606)
. ..+++.++.+......+... .+|| +..+|+++++|||++ ||..++..+.+.|.+.. .+.+
T Consensus 106 ~----~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~--~~~~ 166 (354)
T 1sxj_E 106 R----IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIR 166 (354)
T ss_dssp H----HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEE
T ss_pred h----HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--CCCE
Confidence 1 12334444332211111112 4566 788999999999999 99999999999998864 3678
Q ss_pred EEEEecCCcchHHhcCCe
Q psy10223 214 VLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 214 ii~t~h~~~~~i~~~~D~ 231 (606)
+|+++|++..-...+.+|
T Consensus 167 ~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 167 LIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp EEEEESCSCSSCHHHHTT
T ss_pred EEEEeCCHHHHHHHHHhh
Confidence 888999875433333333
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-14 Score=152.34 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=94.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccccCeEEEEc-------
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLFQTTCGYVN------- 105 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~~~~i~yv~------- 105 (606)
+.+|+++ + .++|++++|+|||||||||||++|+|..+ +.+|+|.+.|.++.. ...++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 3467777 4 38999999999999999999999999887 568999998877631 11233455544
Q ss_pred --CCCCC--CCC----CCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh
Q psy10223 106 --HRTDL--IPS----LTVEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV 176 (606)
Q Consensus 106 --q~~~~--~~~----lTV~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~ 176 (606)
|++.. ++. .|+.+++.++..-... ........ ..+.+.|..+++.+.. .+..|||||+|| ||++|+
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~--~~~~LSgg~~QR--LaraL~ 307 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL--ISSSLLGVLAQR--LVRTLC 307 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH--HHHHEEEEEEEE--EEEEEC
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH--HHHHHHHHHHHH--hhhhhc
Confidence 77764 344 6888888876421100 00000001 1223356778887753 678899999999 999999
Q ss_pred hCCCEEEE
Q psy10223 177 KDPVLLLL 184 (606)
Q Consensus 177 ~~p~llll 184 (606)
.+|++..-
T Consensus 308 ~~p~~~~~ 315 (418)
T 1p9r_A 308 PDCKEPYE 315 (418)
T ss_dssp TTTCEEEE
T ss_pred CCCCccCC
Confidence 99998763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-14 Score=149.09 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=103.0
Q ss_pred ceeeEEeeEEEEeCC-------eEEEEEcCCCccHHHHHHHHHcCCCC---CCeeEEEECCEeCCc---ccccCeEEEEc
Q psy10223 39 TALILKDISLEVRPG-------EVLAVLGSKGSGKRALLEVISRRSSG---TTRGEIILDGTPMSP---QLFQTTCGYVN 105 (606)
Q Consensus 39 ~~~iL~~vs~~v~~G-------e~~~IlG~nGsGKSTLLk~L~g~~~~---~~~G~I~~~G~~~~~---~~~~~~i~yv~ 105 (606)
...+++++++.+++| +.++|.||||+|||||+++|+|.... +.+|.+..++.++.. ...+..+.+++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 356889999999887 89999999999999999999997621 345555554443321 11245799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 106 HRTDLIPSLTVEQTLYYAAHLSIGPQ-VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 106 q~~~~~~~lTV~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|.+.+.+ ++.|++..........- .......+.++..+..+++.. ..+.+..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~------------ 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII------------ 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE------------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce------------
Confidence 9877765 78888865543221000 011122344555666666655 6778899999999998654
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCC
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKS 211 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g 211 (606)
.+||+.+..++.++|++.++..+
T Consensus 175 ----~~Ld~~~~~~l~~iL~~~~~~~~ 197 (334)
T 1in4_A 175 ----LELDFYTVKELKEIIKRAASLMD 197 (334)
T ss_dssp ----EECCCCCHHHHHHHHHHHHHHTT
T ss_pred ----eeCCCCCHHHHHHHHHHHHHHcC
Confidence 78888899999999999877655
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-12 Score=135.91 Aligned_cols=107 Identities=14% Similarity=0.215 Sum_probs=73.9
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE---CCEeCCcc--cc-cCeEEEEcCCCC-------------
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGTPMSPQ--LF-QTTCGYVNHRTD------------- 109 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~---~G~~~~~~--~~-~~~i~yv~q~~~------------- 109 (606)
.+.+|++++|+||||||||||||+|+|+.. +.+|+|.+ +|++++.. .+ .+.++|++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~-~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCC-CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccc-ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 355799999999999999999999999987 78899999 88876431 12 235899999874
Q ss_pred ---CCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-hhhcccCCCCCH
Q psy10223 110 ---LIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-NVARRNISELTP 163 (606)
Q Consensus 110 ---~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~LSg 163 (606)
++|++|+ ||+.|+.. .. ..+...+++++|+.++|. +..+++++.||.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NH-----VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5899999 99887532 11 112345789999999995 777888888875
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-14 Score=155.60 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=101.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe-CCcccccCeEEEEcCCCCC--------
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-MSPQLFQTTCGYVNHRTDL-------- 110 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~-~~~~~~~~~i~yv~q~~~~-------- 110 (606)
..+++++++.+++|+.++|+|||||||||||++|+|..+ +.+|.|.++|.+ +.. .....+.++.+....
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~~E~~~-~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDTREIKL-YHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCCCCC-CCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcccccC-CCCCeEEEEeecccccCCcCHHH
Confidence 457889999999999999999999999999999999987 788999998864 221 112345555544332
Q ss_pred --------------CCCCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCC-----ch----hhc---ccCCCCCH
Q psy10223 111 --------------IPSLTVEQTLYYAAHLSIGPQ-VSRYVRNARIRQVLADLAL-----SN----VAR---RNISELTP 163 (606)
Q Consensus 111 --------------~~~lTV~e~l~f~~~~~~~~~-~~~~~~~~~v~~~l~~lgL-----~~----~~~---~~v~~LSg 163 (606)
+..++..|++.+......+.. ++. .....+.++++++.. .. ..+ .....+|+
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 234444444333221111000 000 000112333433322 11 112 22345799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE--EecCCcchHHhcC
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL--TMEKPRSDVLPFL 229 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~--t~h~~~~~i~~~~ 229 (606)
|||||+.++. + | |+|||+.....+++.|.++.+ .++|+++ ++|. .+++.+.|
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~-l~ei~~~~ 457 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKK-LEKMADFL 457 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTH-HHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHH-HHHHHHHc
Confidence 9999877641 1 7 999999876666666666543 3667664 5553 34454444
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-13 Score=131.72 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=65.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCC--CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSG--TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~--~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
.++|++++|+||||||||||+++|+|++++ +..|.|..+|...... ..+++....+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~--------------------~~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNR--------------------LLEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHH--------------------HHGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHH--------------------HHHHhcccccCC
Confidence 579999999999999999999999998751 2345555555433211 111100000000
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCch----hhcccCCCCCHHHHHHHHHH-HHHhhCCCEEEEeCCC
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSN----VARRNISELTPSEHRRVVIG-TQLVKDPVLLLLDEPT 188 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~LSgGerqRvsIa-~aL~~~p~llllDEPT 188 (606)
.+..... ....+.+..+...+ .......++|+||+||++++ ++++.++.++++|||.
T Consensus 79 ~~~~~~~----~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDF----EGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCH----HHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhH----HHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0001111 11222333221111 11122345799999999998 8888888888888884
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.7e-14 Score=150.17 Aligned_cols=170 Identities=11% Similarity=0.117 Sum_probs=117.5
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC-----------CCCCeeEEEECCEeCCc--c--cccCe---EEEEcCCCCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS-----------SGTTRGEIILDGTPMSP--Q--LFQTT---CGYVNHRTDL 110 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-----------~~~~~G~I~~~G~~~~~--~--~~~~~---i~yv~q~~~~ 110 (606)
.+++|+.++|+|+||||||||+|+|+|.. ..+..|.+.++|..+.. . ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999931 12678999998854321 0 11222 2466777777
Q ss_pred CCCCCHHHHH--HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCC--CEEEEeC
Q psy10223 111 IPSLTVEQTL--YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDP--VLLLLDE 186 (606)
Q Consensus 111 ~~~lTV~e~l--~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p--~llllDE 186 (606)
.+.++..|.+ .|...++. ++.++..++.. .+..+..+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhcc--ccceeeeecccc------------Ccchhhhhchh
Confidence 7777766655 33333221 11111111221 144555677653 89 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEecCCcchHHhcCCeEE-EEcCC-eEEEecChhH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSY-AKRKSRAVLLTMEKPRSDVLPFLDRTA-YLCLG-DLIYAGPTRL 248 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l-~~~~g~tii~t~h~~~~~i~~~~D~v~-vL~~G-~~v~~G~~~~ 248 (606)
|+.++|+....+.++.+++. ++ .|.|++ +|. ..++.++||++. +|.+| +.++.|+.++
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~-~~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKA-KKEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHH-HHHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh-cCCccc--ccc-HHHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999887 54 466654 564 567899999999 99999 8888776543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-12 Score=131.26 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=70.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE---CCEeCCcc--cccCeEEEEcCCCCCCC----CCCHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL---DGTPMSPQ--LFQTTCGYVNHRTDLIP----SLTVEQ 118 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~---~G~~~~~~--~~~~~i~yv~q~~~~~~----~lTV~e 118 (606)
+.+.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|+..+.. .++..++|+.|.+.+.+ .+|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4567899999999999999999999999987 67899998 78765431 12222799999987655 6899 8
Q ss_pred HHH--HHH------HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHH
Q psy10223 119 TLY--YAA------HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRR 168 (606)
Q Consensus 119 ~l~--f~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqR 168 (606)
++. |.. .++........+...+++++++.++|.+...+....++.|++||
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 883 331 11111101111223568899999999876666666677777763
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.4e-14 Score=138.01 Aligned_cols=57 Identities=11% Similarity=-0.005 Sum_probs=42.9
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 171 IGT-QLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 171 Ia~-aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
+++ +++.+|++++|||+|+++|..+...+.+.|.+..++. ...|. . ..+|+++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~-----~~a~~----~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM-----ESSKE----P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT-----TGGGS----T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HHhhc----c-CCceEEEECCC
Confidence 455 6788888899999999999999999999998876541 11231 1 57999988764
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-14 Score=148.12 Aligned_cols=143 Identities=17% Similarity=0.205 Sum_probs=96.6
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCC-CCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRT-DLIPSL 114 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~-~~~~~l 114 (606)
...+++++++.+++| ++|+||||||||||+|+|+|... + |.|.++|.++... ..++.+++++|.. ...|.+
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 456899999999999 99999999999999999999875 2 7899998776321 1223455566553 344555
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV----- 189 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs----- 189 (606)
++.|++......+ .. .... .+....++.+..|||||+||+.|++++..+|++| ||++.
T Consensus 107 ~~~Deid~~~~~r-----~~----~~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRf 169 (274)
T 2x8a_A 107 IFFDEVDALCPRR-----SD----RETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRL 169 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSS
T ss_pred Eeeehhhhhhccc-----CC----Ccch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccC
Confidence 5555554321100 00 0000 1334556677889999999999999999999985 98864
Q ss_pred -------CCCHHHHHHHHHHH
Q psy10223 190 -------NLDPLSTYLIVSML 203 (606)
Q Consensus 190 -------gLD~~~~~~i~~~L 203 (606)
-.|...+.++++.+
T Consensus 170 d~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHH
Confidence 23555665555443
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-11 Score=131.87 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=115.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEEECCEeCCcccccCeE-EEEcCCCCCCCCCCHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EIILDGTPMSPQLFQTTC-GYVNHRTDLIPSLTVEQ 118 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~~~G~~~~~~~~~~~i-~yv~q~~~~~~~lTV~e 118 (606)
..|+++.+-+++|+++.|.|+||+|||||+..|++... ...| .|.|-+.+.+...+..++ +... .... +
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~-~ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA-Q 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-H
Confidence 46888888899999999999999999999999887542 1123 343333222211110000 0000 0000 0
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC----
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTVNLD---- 192 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTsgLD---- 192 (606)
. ++. ...+.. ..+++.+.++.++..+..-....++|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 262 ~------l~~-g~l~~~-~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 262 N------LRT-GKLTPE-DWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp H------HHT-SCCCHH-HHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred H------Hhc-CCCCHH-HHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 0 010 123332 2345566666665544433345689999987 5666666 6899999999998773
Q ss_pred ----HHHHHHHHHHHHHHHHhCCcEEEEEecC-----------Cc-------chHHhcCCeEEEEcCCeE
Q psy10223 193 ----PLSTYLIVSMLSSYAKRKSRAVLLTMEK-----------PR-------SDVLPFLDRTAYLCLGDL 240 (606)
Q Consensus 193 ----~~~~~~i~~~L~~l~~~~g~tii~t~h~-----------~~-------~~i~~~~D~v~vL~~G~~ 240 (606)
.....++.+.|+.++++.+.+||+++|- |. ..+...+|.|++|+.++.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3345778889999998889999998871 22 147788999999987653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.00 E-value=4.2e-11 Score=118.56 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=47.8
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch-------HHhcCCeEEEEcC
Q psy10223 177 KDPVLLLLDEPTVNL--DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD-------VLPFLDRTAYLCL 237 (606)
Q Consensus 177 ~~p~llllDEPTsgL--D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~-------i~~~~D~v~vL~~ 237 (606)
.+|+++++|+|+..+ |+....+++..|.+++++.|.|+++++|...+. +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665566777778887777899999998865431 4678899999974
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-12 Score=132.17 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=88.0
Q ss_pred eeEEeeEEEE-------------------eCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEE---CCEeCCcccc
Q psy10223 41 LILKDISLEV-------------------RPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIIL---DGTPMSPQLF 97 (606)
Q Consensus 41 ~iL~~vs~~v-------------------~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~---~G~~~~~~~~ 97 (606)
++++++++.+ ++|++++|+||||||||||+++|+|+... +.+|+|.+ +|..... ..
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~-~~ 127 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN-QV 127 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH-HH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH-HH
Confidence 5788999887 99999999999999999999999997641 46799999 8876542 23
Q ss_pred cCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh
Q psy10223 98 QTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK 177 (606)
Q Consensus 98 ~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~ 177 (606)
++.++++ |...+++.+|+.+++.+...++.... .+ ..+.-..+. .+|+..+.+.+.
T Consensus 128 ~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~i----~~P~~~~~~--~~~~~~~~~~~~ 183 (308)
T 1sq5_A 128 LKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP-----------------NV----TAPVYSHLI--YDVIPDGDKTVV 183 (308)
T ss_dssp HHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS-----------------CE----EECCEETTT--TEECTTCCEEEC
T ss_pred HHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC-----------------ce----ecccccccc--cCcccccceecC
Confidence 4457777 77778889999999988766532110 00 000001111 122222223456
Q ss_pred CCCEEEEeCCCCCCCH
Q psy10223 178 DPVLLLLDEPTVNLDP 193 (606)
Q Consensus 178 ~p~llllDEPTsgLD~ 193 (606)
+|+++++|.|....|.
T Consensus 184 ~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 184 QPDILILEGLNVLQSG 199 (308)
T ss_dssp -CCEEEEECTTTTCCG
T ss_pred CCCEEEECchhhCCCc
Confidence 7899999999988774
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-10 Score=117.55 Aligned_cols=115 Identities=14% Similarity=0.207 Sum_probs=81.4
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAA 124 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~ 124 (606)
.+++..++|++++|+|+|||||||+++.|++... +..|+|.+.+.+.. |. ++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-~~g~kV~lv~~D~~----r~-----------------------~a 147 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTF----RA-----------------------AA 147 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTT----CH-----------------------HH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-hcCCEEEEEccccc----cH-----------------------HH
Confidence 3455678999999999999999999999999875 45577777655431 10 00
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q psy10223 125 HLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRV---VIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVS 201 (606)
Q Consensus 125 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRv---sIa~aL~~~p~llllDEPTsgLD~~~~~~i~~ 201 (606)
.+..+.+++.+++.. +...|+|+.+++ +|++++..+|+++++|||.. ......+++
T Consensus 148 -------------~eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~ 206 (306)
T 1vma_A 148 -------------IEQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLME 206 (306)
T ss_dssp -------------HHHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHH
T ss_pred -------------HHHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHH
Confidence 012334455566643 346689999999 89999999999999999975 334455666
Q ss_pred HHHHHHH
Q psy10223 202 MLSSYAK 208 (606)
Q Consensus 202 ~L~~l~~ 208 (606)
.|+++.+
T Consensus 207 eL~~l~~ 213 (306)
T 1vma_A 207 ELRKVHR 213 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=115.71 Aligned_cols=149 Identities=15% Similarity=0.213 Sum_probs=86.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
+-+++|+++.|.||||||||||+..++.... ...| .+.|+.-+...-+ . .+.+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~----------------~vlyi~~E~~~~~------~--~a~~-- 108 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGG----------------IAAFIDAEHALDP------E--YAKK-- 108 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTC----------------CEEEEESSCCCCH------H--HHHH--
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCC----------------eEEEEECCCCcCH------H--HHHH--
Confidence 3689999999999999999999888775422 1112 2344433321110 0 1111
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------CH--
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKD--PVLLLLDEPTVNL----------DP-- 193 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~--p~llllDEPTsgL----------D~-- 193 (606)
+|.....-......+. .+-+.++++++.+ |+++++||+++.+ |+
T Consensus 109 --------------------lG~~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~ 166 (349)
T 2zr9_A 109 --------------------LGVDTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHV 166 (349)
T ss_dssp --------------------TTCCGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CC
T ss_pred --------------------cCCCHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchh
Confidence 1111000000011122 2345677878755 9999999999998 33
Q ss_pred -HHHHHHHHHHHHH---HHhCCcEEEEEecCCcc---------------hHHhcCCeEEEEcCCeEEEecC
Q psy10223 194 -LSTYLIVSMLSSY---AKRKSRAVLLTMEKPRS---------------DVLPFLDRTAYLCLGDLIYAGP 245 (606)
Q Consensus 194 -~~~~~i~~~L~~l---~~~~g~tii~t~h~~~~---------------~i~~~~D~v~vL~~G~~v~~G~ 245 (606)
..+..+.+.|+++ +++.+.++|++.|.... .+...+|.++.++.++++..|+
T Consensus 167 ~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 167 GLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2223344444444 46678999998875321 2567899999998887665554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-09 Score=109.11 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=83.1
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYA 123 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~ 123 (606)
+++++. +|++++|+|+||+||||+++.|++... +..|+|.+.+.+..... ++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-~~~~~v~l~~~d~~~~~------------------~~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPA------------------AR-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-HTTCCEEEEECCSSCHH------------------HH-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEecCCcccHh------------------HH-HHH---
Confidence 678887 999999999999999999999999875 45678887665542110 00 000
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP-TVNLDPLSTYLIVSM 202 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP-TsgLD~~~~~~i~~~ 202 (606)
..+.+..++...... .+-+..+.+|.+|+.+...+++++++||| +.++|.....++.+.
T Consensus 146 ------------------~~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~ 205 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARL 205 (295)
T ss_dssp ------------------HHHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHH
T ss_pred ------------------HHhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHH
Confidence 111233444322110 12344566789999998899999999999 999999888888877
Q ss_pred HHHH
Q psy10223 203 LSSY 206 (606)
Q Consensus 203 L~~l 206 (606)
.+..
T Consensus 206 ~~~~ 209 (295)
T 1ls1_A 206 KEVL 209 (295)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 7665
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-10 Score=128.42 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=100.1
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHc-CCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCC--CHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISR-RSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSL--TVEQTLY 121 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g-~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~l--TV~e~l~ 121 (606)
.+++++.++..++|.|++||||||+|++|.. +......|++.+.+.+.+...+.. ...+|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh--------hccCCcccceeecCHH
Confidence 4678888999999999999999999998764 222133466776666544211110 0112222 2222222
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcc--c-CCCCCHHHHHHH----------HHHHHHhhCCC-EEEEeCC
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARR--N-ISELTPSEHRRV----------VIGTQLVKDPV-LLLLDEP 187 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~-v~~LSgGerqRv----------sIa~aL~~~p~-llllDEP 187 (606)
.+...- .....+.++| .++++..|+.+..+. + ...+|+||+||. .+++++...|. ++++||+
T Consensus 231 ~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~ 306 (512)
T 2ius_A 231 DAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEF 306 (512)
T ss_dssp HHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETH
T ss_pred HHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCH
Confidence 222110 0112344445 367888888765432 2 235788887652 35566677898 8899999
Q ss_pred CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEecCCcch
Q psy10223 188 TVNLDPLSTYLIVSMLSSYA---KRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 188 TsgLD~~~~~~i~~~L~~l~---~~~g~tii~t~h~~~~~ 224 (606)
+.-+|.. ..++.+.|.+++ +..|.++|+++|.|..+
T Consensus 307 ~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~d 345 (512)
T 2ius_A 307 ADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVD 345 (512)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTT
T ss_pred HHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccc
Confidence 9988843 344555555554 34477999999998743
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.3e-10 Score=120.72 Aligned_cols=52 Identities=12% Similarity=0.047 Sum_probs=48.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~ 93 (606)
..+|+|+|+++++ |+++|+|||||||||||++|+|+.+ +.+|+|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-CCCCEEEECCEEcc
Confidence 4579999999999 9999999999999999999999987 78899999998764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.2e-09 Score=107.32 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=85.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGP 130 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~ 130 (606)
++|++++|+|||||||||+++.|++... +.+| +++.++.+|.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-LEKH---------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-HTTC---------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-HhcC---------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 5799999999999999999999999864 3334 23556655542 2355555544332
Q ss_pred CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--H
Q psy10223 131 QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA--K 208 (606)
Q Consensus 131 ~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~--~ 208 (606)
..|+.... ..+. ..-+.+|+ .+.+|+++++| |+|+|+.....+.++.+.+. .
T Consensus 159 ----------------~~gl~~~~-----~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~ 212 (296)
T 2px0_A 159 ----------------LLQAPLEV-----CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFES 212 (296)
T ss_dssp ----------------TTTCCCCB-----CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCT
T ss_pred ----------------hcCCCeEe-----cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcC
Confidence 12221110 0122 33355555 45999999999 99999876654444433322 1
Q ss_pred hCCcEEEE-EecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 209 RKSRAVLL-TMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 209 ~~g~tii~-t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
..+.++++ ++|. ..++.+.+|++..+..+.++..
T Consensus 213 ~~~~~lVl~at~~-~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 213 SIQSFLVLSATAK-YEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp TEEEEEEEETTBC-HHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCeEEEEEECCCC-HHHHHHHHHHHhcCCCCEEEEe
Confidence 12234444 2443 4567777777666666777653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.1e-11 Score=134.08 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=100.6
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCC---------
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRT--------- 108 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~--------- 108 (606)
+...+++++++.+++|+.++|+||||+|||||+++|++.......|.+.+++.+.+. ....++++++..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHHH
Confidence 345689999999999999999999999999999999999874444888888876542 345678877642
Q ss_pred -------------CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHH
Q psy10223 109 -------------DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQL 175 (606)
Q Consensus 109 -------------~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL 175 (606)
..++.+++.+|+........+...-. ......-+.+|..+......+++|+|++|++..+...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~----~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID----ATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEE----CTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEE----cCCCCHHhcCceEEechhhcCCccccccccccCceee
Confidence 11111111111110000000000000 0000011122222222223468999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLSS 205 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~~ 205 (606)
..++.+|++||... |++.....+.+.|.+
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999988 899988888888864
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-10 Score=107.82 Aligned_cols=38 Identities=11% Similarity=0.046 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy10223 167 RRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSY 206 (606)
Q Consensus 167 qRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l 206 (606)
+++.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3477899999999999999 9999999999999988753
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.74 E-value=3.8e-10 Score=108.70 Aligned_cols=68 Identities=15% Similarity=0.188 Sum_probs=46.8
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
|+.+++|++++|+||||||||||+++|+|+.+ .+.+++...... ..+..++|++|++..++.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 56788999999999999999999999999853 356666554321 124567888888766555555444
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-12 Score=131.07 Aligned_cols=124 Identities=12% Similarity=0.158 Sum_probs=81.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~-~~~~lT 115 (606)
..+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ...++.+.+++|... ..|.++
T Consensus 62 ~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 62 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 45788999999999 99999999999999999999864 5889888765421 111233555666542 566777
Q ss_pred HHHHHHHHHHccCCC-CCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCE
Q psy10223 116 VEQTLYYAAHLSIGP-QVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVL 181 (606)
Q Consensus 116 V~e~l~f~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~l 181 (606)
+.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH-------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEecCCchh
Confidence 777775433211000 001112222333333 35789999999999999999876
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-12 Score=127.32 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=82.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCC-CCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRT-DLIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~-~~~~~lT 115 (606)
..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++... ..++.+++++|.. ...|.++
T Consensus 38 ~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 38 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 45789999999999 99999999999999999999764 58888887654211 1123345556653 3556677
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP 187 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP 187 (606)
+.|++......+.. ......+..+.+.+++ ..|||||+||+.|++++..+|++ +|++
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH-------------HHHHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH-------------HHHhCCCCCCCEEEEEccCCchh--CCHH
Confidence 77777443321100 0001112222333333 35789999999999999999976 4543
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-08 Score=104.80 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=27.3
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+=+++|+++.|.||||||||||+..++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999998764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-08 Score=98.09 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=22.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH-cCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS-RRSS 78 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~-g~~~ 78 (606)
.+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 46789999999999999999999999999999999 9865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-10 Score=123.31 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=82.1
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCC-CCCCCCHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTD-LIPSLTVEQ 118 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~-~~~~lTV~e 118 (606)
..+|+++++.+++|++++|+||||||||||+++|+|.. .|++..-..+.. .++..+++++|... ++..++...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~----~g~~~~~~~~~~--~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLPLD--RLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSCTT--THHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc----CCcEEEEeccch--hHHHHHHHhcchhHHHHHHHHHHH
Confidence 36899999999999999999999999999999999864 366654111111 11112444555432 222222211
Q ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHHHH---cCCc-------------hhhcccCCCCCHHHHHHHHHHHHHhhCCCEE
Q psy10223 119 TLYYAAHLSIGPQVSRYVRNARIRQVLAD---LALS-------------NVARRNISELTPSEHRRVVIGTQLVKDPVLL 182 (606)
Q Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~-------------~~~~~~v~~LSgGerqRvsIa~aL~~~p~ll 182 (606)
.+ .+.............+.+.++. +.+. ...+.....+++|+++|+..+.+++.+|+++
T Consensus 230 ~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 10 0000000000011223333321 0011 1234456789999999999888888999988
Q ss_pred E-EeCCCC
Q psy10223 183 L-LDEPTV 189 (606)
Q Consensus 183 l-lDEPTs 189 (606)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999986
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-07 Score=98.77 Aligned_cols=128 Identities=12% Similarity=0.159 Sum_probs=84.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.-|+.+.+-+++|+++.|.|+||+|||||+.-++.... .. ...+.|+.= .++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a-~~----------------g~~Vl~fSl------Ems~~q-- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL-ND----------------DRGVAVFSL------EMSAEQ-- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH-HT----------------TCEEEEEES------SSCHHH--
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-Hc----------------CCeEEEEeC------CCCHHH--
Confidence 45777777799999999999999999999988875422 11 122344321 123222
Q ss_pred HHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q psy10223 121 YYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIV 200 (606)
Q Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~ 200 (606)
...|+......+.+.+..+ +.||.+|.+|+..|...+.++++++.|+|... ..++.
T Consensus 89 ----------------l~~Rlls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~ 144 (338)
T 4a1f_A 89 ----------------LALRALSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIR 144 (338)
T ss_dssp ----------------HHHHHHHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHH
T ss_pred ----------------HHHHHHHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHH
Confidence 2222222222233333322 47999999999999999999999999998654 33666
Q ss_pred HHHHHHHHhC-CcEEEEE
Q psy10223 201 SMLSSYAKRK-SRAVLLT 217 (606)
Q Consensus 201 ~~L~~l~~~~-g~tii~t 217 (606)
..++++.++. +..+|++
T Consensus 145 ~~ir~l~~~~gg~~lIVI 162 (338)
T 4a1f_A 145 LQLRKLKSQHKELGIAFI 162 (338)
T ss_dssp HHHHHHHHHCTTEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEE
Confidence 7777777666 6666665
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.43 E-value=6.4e-09 Score=103.05 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=41.3
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-----------ccccCeEEEEcCC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-----------QLFQTTCGYVNHR 107 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-----------~~~~~~i~yv~q~ 107 (606)
++++++ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++.. ...+..++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566667 8999999999999999999999987 678999999987621 1135678888874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.5e-08 Score=94.60 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy10223 169 VVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYA 207 (606)
Q Consensus 169 vsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~ 207 (606)
...|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-07 Score=101.25 Aligned_cols=112 Identities=14% Similarity=0.281 Sum_probs=72.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
.++++++.+++| ++|.||||+|||||+|+|++....+. +.+++.+. . ..
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~f---~~is~~~~------------------~-~~------- 88 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVPF---FHISGSDF------------------V-EL------- 88 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGGT------------------T-TC-------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCCe---eeCCHHHH------------------H-HH-------
Confidence 455667777777 88999999999999999998543110 11111000 0 00
Q ss_pred HHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCC----------CCCC
Q psy10223 122 YAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEP----------TVNL 191 (606)
Q Consensus 122 f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEP----------TsgL 191 (606)
.++ .|++++|..++++....|.++++||+ +.|.
T Consensus 89 -----------------------------------~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~ 131 (476)
T 2ce7_A 89 -----------------------------------FVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG 131 (476)
T ss_dssp -----------------------------------CTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--------
T ss_pred -----------------------------------Hhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC
Confidence 000 15677888899999999999999999 3467
Q ss_pred CHHHHHHHHHHHHHHH---HhCCcEEEEEecCC
Q psy10223 192 DPLSTYLIVSMLSSYA---KRKSRAVLLTMEKP 221 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~---~~~g~tii~t~h~~ 221 (606)
|......+.++|..+- ...+..+|.++|+|
T Consensus 132 ~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 132 HDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp -CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 7766666666666653 23467788888876
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.2e-07 Score=96.25 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=87.2
Q ss_pred eCCeE-EEEEcCCCccHHHHHHHHHcCCCC----------CCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHH-
Q psy10223 51 RPGEV-LAVLGSKGSGKRALLEVISRRSSG----------TTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQ- 118 (606)
Q Consensus 51 ~~Ge~-~~IlG~nGsGKSTLLk~L~g~~~~----------~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e- 118 (606)
++|-. ++|+|+||||||||+|.|+|.... +..|.|.++|.++. +....|++.+. |.-.|..
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~l----p~~lve~f 248 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGI----PPQIVDAF 248 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSC----CGGGHHHH
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcC----CHHHHHHH
Confidence 34544 999999999999999999987531 34588888886542 12223443332 1212221
Q ss_pred --HHHHHHHc----c-CCCCCCH---HHHHHHHHHHHHHcCCchhh----cccCCCCCHHHHHHHHHH----HHH-hhCC
Q psy10223 119 --TLYYAAHL----S-IGPQVSR---YVRNARIRQVLADLALSNVA----RRNISELTPSEHRRVVIG----TQL-VKDP 179 (606)
Q Consensus 119 --~l~f~~~~----~-~~~~~~~---~~~~~~v~~~l~~lgL~~~~----~~~v~~LSgGerqRvsIa----~aL-~~~p 179 (606)
++...... . ....... .+..+.+.++++.+++.+.. ..++..+|+++++|+.++ +++ ..+|
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 11111000 0 0001111 22334466778888765432 344666888888988887 444 3334
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q psy10223 180 VLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209 (606)
Q Consensus 180 ~llllDEPTsgLD~~~~~~i~~~L~~l~~~ 209 (606)
++ +|+|++|.....++.+.|.+....
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 44 899999999999999999887654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.8e-07 Score=93.84 Aligned_cols=35 Identities=11% Similarity=0.150 Sum_probs=30.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.-|+++.+-+++|+++.|.|+||+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45777777799999999999999999999888774
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-08 Score=98.67 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=32.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~ 93 (606)
..+.....++|++++|+||||||||||+|+|++.. |.+.++|.++.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~ 64 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFH 64 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGS
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccc
Confidence 33334667899999999999999999999999865 67888876653
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.2e-06 Score=101.67 Aligned_cols=76 Identities=8% Similarity=0.083 Sum_probs=59.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeE
Q psy10223 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRT 232 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v 232 (606)
..+.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+..... ..+++++|..++.+.+.+++++.
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 4456689999999999999999999999999995 9998887777777765532 45677776333556777788753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.5e-07 Score=84.43 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=31.3
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 6888999999 999999999999999999998765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.5e-07 Score=85.42 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=26.8
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++++|++++|+||||||||||++.|++...
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3578999999999999999999999999874
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.09 E-value=4.1e-07 Score=94.66 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=57.5
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-------ccc-----cCeEEEE-cCCCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-------QLF-----QTTCGYV-NHRTD 109 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-------~~~-----~~~i~yv-~q~~~ 109 (606)
++++++.+++|++++|+|+||+||||++..|++... +..|+|.+.+.+... ..+ +..+.++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 478999999999999999999999999999999876 456889887776532 112 5568888 66654
Q ss_pred CCCCCCHHHHHH
Q psy10223 110 LIPSLTVEQTLY 121 (606)
Q Consensus 110 ~~~~lTV~e~l~ 121 (606)
..|..++.+++.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.4e-05 Score=83.76 Aligned_cols=139 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCC-CCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRS-SGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHL 126 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~-~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~ 126 (606)
+-+++|+++.|.||+|||||||+..++... .+...| | ....+.|+.-+..+ ...+-...+.++
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g-------~~~~vlyi~~E~~~----~~~~l~~~~~~~ 180 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y-------PGGKIIFIDTENTF----RPDRLRDIADRF 180 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B-------CCCEEEEEESSSCC----CHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C-------CCCeEEEEECCCCC----CHHHHHHHHHHc
Confidence 568999999999999999999999888642 111100 1 11345566544321 222222222221
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHH-HHHHHHHHHh----hCCCEEEEeCCCCCCCHH-------
Q psy10223 127 SIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEH-RRVVIGTQLV----KDPVLLLLDEPTVNLDPL------- 194 (606)
Q Consensus 127 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGer-qRvsIa~aL~----~~p~llllDEPTsgLD~~------- 194 (606)
+... +++++.+.+ .+..++.+. +.+..++.++ .+++++++|+.++-.+..
T Consensus 181 ----g~~~-------~~~l~~l~~-------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~ 242 (343)
T 1v5w_A 181 ----NVDH-------DAVLDNVLY-------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGEL 242 (343)
T ss_dssp ----TCCH-------HHHHHTEEE-------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCH
T ss_pred ----CCCH-------HHHHhceeE-------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccH
Confidence 1111 122332211 112233322 4455555665 579999999999865431
Q ss_pred -----HHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 195 -----STYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 195 -----~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
...++++.|++++++.+.+||++.|-
T Consensus 243 ~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 243 AERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 13567777888888889998887663
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=4.1e-07 Score=87.68 Aligned_cols=127 Identities=13% Similarity=0.168 Sum_probs=69.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSR 134 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~ 134 (606)
+++|+|+|||||||+.+.|+++ |...+++-.+ .+. +. + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l------g~~~id~d~~----~~~-~~---~-----~~-------------------~- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL------GVPLVDADVV----ARE-VV---A-----KD-------------------S- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT------TCCEEEHHHH----HHH-TT---C-----SS-------------------C-
T ss_pred EEEEECCCCCCHHHHHHHHHHC------CCcccchHHH----HHH-Hc---c-----CC-------------------h-
Confidence 6899999999999999999983 2222322111 000 00 0 00 0
Q ss_pred HHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q psy10223 135 YVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAV 214 (606)
Q Consensus 135 ~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~ti 214 (606)
..+.++.+.+|.... .+.|+.+|..++..+..+|+.+.++ .+.++|.....+.+.++.. .+.++
T Consensus 45 ----~~~~~i~~~~g~~~~-------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~v 108 (206)
T 1jjv_A 45 ----PLLSKIVEHFGAQIL-------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYT 108 (206)
T ss_dssp ----HHHHHHHHHHCTTCC-------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEE
T ss_pred ----HHHHHHHHHhCHHHh-------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEE
Confidence 123444555554321 2578888999988888887654433 3345666555555544332 24577
Q ss_pred EEEecCCcch-HHhcCCeEEEEc
Q psy10223 215 LLTMEKPRSD-VLPFLDRTAYLC 236 (606)
Q Consensus 215 i~t~h~~~~~-i~~~~D~v~vL~ 236 (606)
|+..|...+. +.+.||.+++|+
T Consensus 109 v~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 109 LFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEechhhhcCcHhhCCEEEEEE
Confidence 7776643221 367789988885
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.4e-06 Score=83.82 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=24.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+...+++|||+.+++|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999999765
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.3e-09 Score=114.06 Aligned_cols=130 Identities=13% Similarity=0.176 Sum_probs=82.2
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc---cccCeEEEEcCCCC-CCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ---LFQTTCGYVNHRTD-LIPSLT 115 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~---~~~~~i~yv~q~~~-~~~~lT 115 (606)
..+++++++.+++| ++|.||||+|||||+|+|++... .+.+.++|.++... ...+.+..++|... ..|.+.
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 35678889999999 99999999999999999999764 47888888665321 01122334455432 344444
Q ss_pred HHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q psy10223 116 VEQTLYYAAHLSIG-PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV 189 (606)
Q Consensus 116 V~e~l~f~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs 189 (606)
+.|++......+.. ......+..+.+.+++. .||||++|+..|+.+...+|++ +||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 44544322111100 00112233344455544 3678899999999999999987 888764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.6e-06 Score=87.18 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=46.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEe
Q psy10223 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLD-EPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTM 218 (606)
Q Consensus 156 ~~v~~LSgGerqRvsIa~aL~~~p~llllD-EPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~ 218 (606)
.....+|+||+|++. +.+...++-++++| +|+.|+|.....++++.++.... +..+|++.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 455678999998886 55556778889999 99999999998888888776542 55555555
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.7e-05 Score=82.39 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=80.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHcc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLS 127 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~ 127 (606)
+-+++|+++.|.||+|+|||||+..++.....+.. ++| ....+.|+.-+..+ ...+-...+.++
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~----~gg-------~~~~vlyi~~e~~~----~~~~l~~~~~~~- 165 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPE----KGG-------LSGKAVYIDTEGTF----RWERIENMAKAL- 165 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGG----GTC-------CSCEEEEEESSSCC----CHHHHHHHHHHT-
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccc----cCC-------CCCeEEEEECCCCC----CHHHHHHHHHHh-
Confidence 56899999999999999999999988754211110 001 12345566544321 122222222221
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCCH--------H-
Q psy10223 128 IGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-HRRVVIGTQLV---KDPVLLLLDEPTVNLDP--------L- 194 (606)
Q Consensus 128 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe-rqRvsIa~aL~---~~p~llllDEPTsgLD~--------~- 194 (606)
+... +++++.+-+ .+..++.+ .+.+..++.++ .+|+++++|+.++-.+. .
T Consensus 166 ---g~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~ 228 (324)
T 2z43_A 166 ---GLDI-------DNVMNNIYY-------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAV 228 (324)
T ss_dssp ---TCCH-------HHHHHTEEE-------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHH
T ss_pred ---CCCH-------HHHhccEEE-------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHH
Confidence 1111 112221111 11223332 35677777777 67999999999875432 1
Q ss_pred ---HHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 195 ---STYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 195 ---~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
...++++.|++++++.+.+||++.|.
T Consensus 229 r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 229 RQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 23567777888888889999988653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.6e-07 Score=92.61 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=46.7
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH---cCCCCCCeeEEE--------ECCEeCCc----ccccCeEEEEc
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEII--------LDGTPMSP----QLFQTTCGYVN 105 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~---g~~~~~~~G~I~--------~~G~~~~~----~~~~~~i~yv~ 105 (606)
.++++.+ ++|++++|+|||||||||++|+|+ |... +++|.|. .+|.++.. ..+++.+++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL-LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 3455544 789999999999999999999999 8765 6789998 88887632 23456677777
Q ss_pred CCC
Q psy10223 106 HRT 108 (606)
Q Consensus 106 q~~ 108 (606)
|.+
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 643
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-06 Score=81.42 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=29.7
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~ 87 (606)
.+|++++|+||||||||||++.|++..+....|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3799999999999999999999999765224455544
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-06 Score=93.74 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=50.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEE-EcCCeEEEecChh
Q psy10223 177 KDPVLLLLDEPTVNLDP-LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAY-LCLGDLIYAGPTR 247 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~-~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~v-L~~G~~v~~G~~~ 247 (606)
.+|++|++||+..-.+. .++..+...+..+.+ .|+.+|+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999887664 677888899888764 5788888988876554444444433 4567777666653
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.5e-05 Score=81.99 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=33.4
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEecCC
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR--KSRAVLLTMEKP 221 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~--~g~tii~t~h~~ 221 (606)
.+|.++++||+... |......+.+.+.+.... .+.++|+++|.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 888888888887665431 367788888865
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.9e-05 Score=82.39 Aligned_cols=171 Identities=17% Similarity=0.196 Sum_probs=97.1
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTL 120 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l 120 (606)
.-|+.+.+-+++|+++.|.|+||+|||||+..++.... ...| ..+.|+.-+ ++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a-~~~g---------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA-LKEG---------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH-HTTC---------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HhCC---------------CeEEEEECC------CCHHHHH
Confidence 34666666699999999999999999999988775321 0011 112332211 2222221
Q ss_pred HH--HHHccCC------CCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q psy10223 121 YY--AAHLSIG------PQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTVN 190 (606)
Q Consensus 121 ~f--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTsg 190 (606)
.- +.....+ ..++..+ .+++.+.++.+.-.+..-....++|..+.+ +.++.+. .+++++++|..+.=
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~--~~~~~l~~~~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIYIDDTPDLTLMEVR--ARARRLVSQNQVGLIIIDYLQLM 322 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEEEECCTTCBHHHHH--HHHHHHHHHSCCCEEEEECGGGC
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEcChhhc
Confidence 11 1111000 0123322 233444444442222221223567777653 4455554 47999999998753
Q ss_pred CCH----------HHHHHHHHHHHHHHHhCCcEEEEEecCCcc------------------hHHhcCCeEEEEc
Q psy10223 191 LDP----------LSTYLIVSMLSSYAKRKSRAVLLTMEKPRS------------------DVLPFLDRTAYLC 236 (606)
Q Consensus 191 LD~----------~~~~~i~~~L~~l~~~~g~tii~t~h~~~~------------------~i~~~~D~v~vL~ 236 (606)
.+. ....++.+.|+.++++.+.+||+++|-... .+.+.+|.|+.|+
T Consensus 323 ~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 323 SGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp BCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 322 223578888999999889999998763210 2456788888875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=7.4e-07 Score=89.48 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=36.0
Q ss_pred cceeeEEeeEEEEeC---CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 38 QTALILKDISLEVRP---GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~---Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.+++|+|+|+++++ |+.++|+|++||||||+.+.|++.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999 9999999999999999999999864
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2e-06 Score=82.67 Aligned_cols=50 Identities=30% Similarity=0.393 Sum_probs=40.2
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEE--EECCEeC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEI--ILDGTPM 92 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I--~~~G~~~ 92 (606)
...+..+...++|++++|+||||||||||++.|++.+. ..|.+ .++|.++
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~--~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCceEEEecCchh
Confidence 34566667778999999999999999999999999864 34666 7777554
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.9e-06 Score=82.66 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=34.4
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
++..++|++++|.|+||||||||+++|+|. .|+|.+.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 334579999999999999999999999987 37788877654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=5e-05 Score=79.87 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=39.9
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy10223 161 LTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219 (606)
Q Consensus 161 LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h 219 (606)
.++.++++..+++..+.+|+++++.-..+..|..+ .+..+.++.+...+..++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999887774334445443 44566666665444467766654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.81 E-value=8.2e-05 Score=75.52 Aligned_cols=27 Identities=26% Similarity=0.521 Sum_probs=24.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++.-++|.||+|+|||||++.|++..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 357789999999999999999999864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.76 E-value=3e-06 Score=87.23 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhCC
Q psy10223 161 LTPSEHRRVVIGTQLV--KDPVLLLLDEPTVNLDPLS-TYLIVSMLSSYAKRKS 211 (606)
Q Consensus 161 LSgGerqRvsIa~aL~--~~p~llllDEPTsgLD~~~-~~~i~~~L~~l~~~~g 211 (606)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~ 147 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMN 147 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSC
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcC
Confidence 898886 5566666 68999998 7888876 6677888888876544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=77.39 Aligned_cols=28 Identities=21% Similarity=0.434 Sum_probs=26.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|++++|+||||||||||++.|++..+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=9.1e-06 Score=75.97 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=30.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
.+|++++|+|+|||||||+++.|++.. |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccc
Confidence 469999999999999999999999864 5566665443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.66 E-value=6.8e-06 Score=79.16 Aligned_cols=41 Identities=20% Similarity=0.119 Sum_probs=33.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~ 91 (606)
.++|++++|+|+||||||||++.|++.+. +..|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~-~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR-EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh-hcCCeEEEeccC
Confidence 57899999999999999999999999764 345667665443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.62 E-value=1.6e-05 Score=76.74 Aligned_cols=29 Identities=14% Similarity=0.410 Sum_probs=26.1
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+|++++|+||||||||||++.|.+..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2.8e-05 Score=74.78 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=26.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|++++|+|+||||||||++.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999875
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.58 E-value=7.7e-05 Score=76.42 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=26.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++++..++|.||+|+|||||.++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467899999999999999999999998653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=1.5e-05 Score=90.93 Aligned_cols=45 Identities=27% Similarity=0.399 Sum_probs=33.1
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEeC
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTPM 92 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~~ 92 (606)
|+.+++|+.++|+|++|+|||||++.|++.... ...|+| .+|...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCccc
Confidence 356788999999999999999999999976431 245777 555544
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00036 Score=72.02 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=85.2
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE-ECCEeCCcccc-cCeEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII-LDGTPMSPQLF-QTTCGYVNHRTDLIPSLTVEQTLYYAAH 125 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~-~~G~~~~~~~~-~~~i~yv~q~~~~~~~lTV~e~l~f~~~ 125 (606)
+-+++|+++.|.||+|+|||||...++....-+ .|... ++|.... -. +..+.|+.-+..+ ...+-...+.+
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~-~~~~~~~~~~~~g--g~~~~~v~yi~~e~~~----~~~~l~~~~~~ 165 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP-EFLFYDEEAVSKG--EVAQPKAVYIDTEGTF----RPERIMQMAEH 165 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG-GGEECCTTTSCTT--TTSSEEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc-ccccccccccccC--CCCCceEEEEECCCCC----CHHHHHHHHHH
Confidence 568999999999999999999998877421101 11100 0111000 00 1356777654432 12222222222
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCC--------H
Q psy10223 126 LSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSE-HRRVVIGTQLV---KDPVLLLLDEPTVNLD--------P 193 (606)
Q Consensus 126 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGe-rqRvsIa~aL~---~~p~llllDEPTsgLD--------~ 193 (606)
+. ... +++++.+-+ .+..+..+ .+-+..++.++ .+++++++|.-+.-.. .
T Consensus 166 ~g----~~~-------~~~~~~l~~-------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~ 227 (322)
T 2i1q_A 166 AG----IDG-------QTVLDNTFV-------ARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKL 227 (322)
T ss_dssp HT----CCH-------HHHHHTEEE-------EECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSH
T ss_pred cC----CCH-------HHHhcCEEE-------EeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccH
Confidence 11 111 112221111 11122222 12344455555 4589999998875321 1
Q ss_pred H----HHHHHHHHHHHHHHhCCcEEEEEecCCcch----------------HHhcCCeEEEEcC
Q psy10223 194 L----STYLIVSMLSSYAKRKSRAVLLTMEKPRSD----------------VLPFLDRTAYLCL 237 (606)
Q Consensus 194 ~----~~~~i~~~L~~l~~~~g~tii~t~h~~~~~----------------i~~~~D~v~vL~~ 237 (606)
. ...++++.|+.++++.+.+||++.| .... +...+|-++.|+.
T Consensus 228 ~~r~~~~~~~~~~L~~la~~~~~~vi~~nq-~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 228 AERQQKLGRHMATLNKLADLFNCVVLVTNQ-VSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEC-EECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCEEEEECc-eeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 1 2356777788888888999888755 2221 4456677777764
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.52 E-value=1.7e-05 Score=88.28 Aligned_cols=43 Identities=28% Similarity=0.412 Sum_probs=35.8
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee-EEE-ECCEeC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG-EII-LDGTPM 92 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G-~I~-~~G~~~ 92 (606)
.+++|++++|+|+||||||||+|+|++++. +.+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-ccCCceEEEECCcHH
Confidence 478999999999999999999999999886 4555 674 777543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=76.12 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=25.4
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+=+++|+++.|.|++|+|||||...++..
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999999877743
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0002 Score=77.29 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQ 131 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~ 131 (606)
++.+++++|+|||||||++..|++.+. ...++|.+-+.+.. | + ...+.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~----r-------------~--~a~eqL~---------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVY----R-------------P--AAYDQLL---------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCS----C-------------H--HHHHHHH----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCcc----c-------------h--hHHHHHH----------
Confidence 589999999999999999999998764 33344544332211 0 0 1112221
Q ss_pred CCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-C--CCHHHHHHHHHHHHHH
Q psy10223 132 VSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-N--LDPLSTYLIVSMLSSY 206 (606)
Q Consensus 132 ~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-g--LD~~~~~~i~~~L~~l 206 (606)
.+-+..++.-... ..+...-+-.+-+++.+...+++++++|+|-. + .|+....++.++++..
T Consensus 146 -----------~~~~~~gv~~~~~--~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~ 210 (433)
T 3kl4_A 146 -----------QLGNQIGVQVYGE--PNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL 210 (433)
T ss_dssp -----------HHHHTTTCCEECC--TTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH
T ss_pred -----------HHHHhcCCceeec--cccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhh
Confidence 1222223321110 01111122223345555567999999999974 4 7888887777766655
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.49 E-value=3.6e-05 Score=71.55 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.|++++|+|+||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999764
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00038 Score=75.48 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=28.4
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-|+.+.+=+++|+++.|.|+||+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555555689999999999999999999877764
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.45 E-value=8e-06 Score=84.85 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=33.9
Q ss_pred ceeeEEeeEEEEeCCe------EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 39 TALILKDISLEVRPGE------VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge------~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++.|++++..+.+++ +++|+||||||||||+++|++++.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3556777777777776 999999999999999999998764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00037 Score=69.21 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=25.0
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++++++..++| ++|.||||+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 355556656666 88999999999999999998654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=7.9e-05 Score=68.49 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=23.9
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+.++.+.+| +.+|+|||||||||+|++|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555555 99999999999999999986
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.36 E-value=2.7e-05 Score=81.30 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++..++|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.33 E-value=4.1e-05 Score=71.64 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0001 Score=70.44 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0034 Score=68.86 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=87.7
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHH
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLY 121 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~ 121 (606)
-|+.+.+=+++|+++.|.|+||+|||||+--++-... ...| ..+.|+.= .++..+.+.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a-~~~g---------------~~vl~~s~------E~s~~~l~~ 288 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG-TAMG---------------KKVGLAML------EESVEETAE 288 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT-TTSC---------------CCEEEEES------SSCHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH-HhcC---------------CcEEEEec------cCCHHHHHH
Confidence 3555544589999999999999999999877663221 1101 12333322 123333332
Q ss_pred H--HHHccCCCCCCHHH-----HHHHHHHHHHHc-CCch-hhcccCCCCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCC
Q psy10223 122 Y--AAHLSIGPQVSRYV-----RNARIRQVLADL-ALSN-VARRNISELTPSEHRRVVIGTQLV--KDPVLLLLDEPTVN 190 (606)
Q Consensus 122 f--~~~~~~~~~~~~~~-----~~~~v~~~l~~l-gL~~-~~~~~v~~LSgGerqRvsIa~aL~--~~p~llllDEPTsg 190 (606)
- +.....+....+.. ..+...++.+.+ .-.+ ..+....+++-.+ -++.++.+. .+|+++++|--+.
T Consensus 289 r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~--i~~~i~~~~~~~~~~lvVID~l~~- 365 (503)
T 1q57_A 289 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDR--LLAKLAYMRSGLGCDVIILDHISI- 365 (503)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHH--HHHHHHHHHHTTCCSEEEEECTTC-
T ss_pred HHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHH--HHHHHHHHHHhcCCCEEEEccchh-
Confidence 1 11111110000000 001112222222 1011 0111122244433 334444443 4699999996543
Q ss_pred C-------CH-HHHHHHHHHHHHHHHhCCcEEEEEecCCc---------------------chHHhcCCeEEEEcC
Q psy10223 191 L-------DP-LSTYLIVSMLSSYAKRKSRAVLLTMEKPR---------------------SDVLPFLDRTAYLCL 237 (606)
Q Consensus 191 L-------D~-~~~~~i~~~L~~l~~~~g~tii~t~h~~~---------------------~~i~~~~D~v~vL~~ 237 (606)
+ +. ....++.+.|+.++++.+.+||+++|... ..+.+.+|-|+.|+.
T Consensus 366 l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 366 VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence 2 22 23456888899999989999999877542 124567899998863
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00011 Score=79.16 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.9
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.+.+|++++|+|||||||||||++|++...
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4467899999999999999999999999775
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=73.28 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=34.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc
Q psy10223 176 VKDPVLLLLDEPTV-NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS 223 (606)
Q Consensus 176 ~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~ 223 (606)
..++++|++||+-. ..|..+...+...+..+.+ .+..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChH
Confidence 35699999999865 3344778888888888765 46667777766654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.21 E-value=1.9e-05 Score=82.76 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=41.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~ 90 (606)
.+.+++++++.+++|.+++|+|+||+|||||++.|++... +..|+|.+-+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-~~~~~v~v~~~ 92 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-REGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEE
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEEee
Confidence 3467889999999999999999999999999999998764 33455555443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00013 Score=71.91 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=27.1
Q ss_pred eEEeeEEEEe---CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 42 ILKDISLEVR---PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 42 iL~~vs~~v~---~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-|.++|+.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4778888877 999999999999999999999998765
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.17 E-value=4.8e-05 Score=84.64 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=40.5
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~ 90 (606)
..+++++++.+ +|+.++|+||||+|||||+++|++... +..|.|.++|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEeccc
Confidence 34677778777 899999999999999999999999875 55688877664
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=9.7e-05 Score=77.58 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=32.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
+++.+++|+|+||||||||+|.|+|... +..|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-hcCCeEEEEeecC
Confidence 4688999999999999999999998764 3456666655443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00049 Score=63.91 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0005 Score=66.56 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00057 Score=68.74 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=24.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.++.-+.|.||+|+|||||++.|++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35677799999999999999999998653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00043 Score=74.77 Aligned_cols=38 Identities=24% Similarity=0.488 Sum_probs=30.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-----------CCCeeEEEECCEeC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS-----------GTTRGEIILDGTPM 92 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~-----------~~~~G~I~~~G~~~ 92 (606)
.++|+|+||+|||||+|.|+|... .+..|.+.++|.++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 699999999999999999998742 13458899998754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00051 Score=64.82 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=20.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998888 5689999999999999999974
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=7.6e-05 Score=73.50 Aligned_cols=67 Identities=12% Similarity=0.084 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTV-NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 162 SgGerqRvsIa~aL~~~p~llllDEPTs-gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+..... .-+++++|...+.+.+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 445554442 33578999999999965 7888776555555544332 2456777655555555555543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00034 Score=65.47 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=29.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee--EEEECCE
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG--EIILDGT 90 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G--~I~~~G~ 90 (606)
++|++++|+|++||||||+++.|++.+. + .| .|.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-h-CCCcEEEECCh
Confidence 4799999999999999999999998753 1 23 4555543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00035 Score=67.76 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEE--------CCEeCCc----ccccCeEEEEcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIIL--------DGTPMSP----QLFQTTCGYVNHR 107 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~--------~G~~~~~----~~~~~~i~yv~q~ 107 (606)
.+.+++|+|||||||||+.+.|++.+. ..+.|++.. +|.++.. ..+++.+++++|+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 357899999999999999999998642 134577665 5655432 1234456666654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00036 Score=67.33 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=23.8
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+.++.+.+| +.+|+|||||||||+|++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555565 99999999999999999886
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0042 Score=60.85 Aligned_cols=24 Identities=29% Similarity=0.417 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-++|+|++|+|||||++.|.|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 479999999999999999999754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00039 Score=65.62 Aligned_cols=32 Identities=28% Similarity=0.454 Sum_probs=26.4
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999875
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0002 Score=69.11 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCee--EEEECCE
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRG--EIILDGT 90 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G--~I~~~G~ 90 (606)
.+++|.+++|.|++||||||+.+.|++.+. +..| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-~~~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV-RDRRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc-cccCCcEEEECCh
Confidence 357899999999999999999999998764 3456 6777643
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0066 Score=63.97 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.3
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-+++|+++.|.||+|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 589999999999999999999877764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0037 Score=61.62 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-+.|.||+|+|||||.+.|+...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568999999999999999998754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0005 Score=65.92 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=26.0
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+|.+++|+||||||||||.+.|+...+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999987653
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0013 Score=64.50 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME---------KPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h---------~~~~~i~~~~D~v~vL~ 236 (606)
+++++++||--. |+. +.++.++.+++. |..||++-| .++.++..++|+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 654 355566777764 899999988 67788999999999875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.80 E-value=5.7e-05 Score=79.73 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G 89 (606)
.++.+++++++.| +|+|++|+|||||++.|.+... ...+.+..++
T Consensus 28 ~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~-~~~~~~~~~~ 72 (361)
T 2qag_A 28 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERVIPGAA 72 (361)
T ss_dssp HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC-CCCCcccCCC
Confidence 3456788888877 9999999999999999988643 3334443333
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00087 Score=65.50 Aligned_cols=61 Identities=13% Similarity=0.014 Sum_probs=42.7
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc---------hHHhcCCeEEEEc
Q psy10223 176 VKDPVLLLLDEPTV----NLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS---------DVLPFLDRTAYLC 236 (606)
Q Consensus 176 ~~~p~llllDEPTs----gLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~---------~i~~~~D~v~vL~ 236 (606)
-.+|++++.|.-+. .-|.....++...|+.++++.+.+++++.|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 45788999986432 1245566778889999999899999998765321 1345688888775
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00022 Score=67.88 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=30.6
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 57888888888885 689999999999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00071 Score=64.51 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0022 Score=58.79 Aligned_cols=23 Identities=17% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|+||+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0077 Score=63.04 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-++|.||+|+|||||.+.|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999764
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=61.80 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0012 Score=62.00 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++|.+++|.|++||||||+.+.|+..+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.00052 Score=73.86 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=38.6
Q ss_pred EeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeC
Q psy10223 44 KDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPM 92 (606)
Q Consensus 44 ~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~ 92 (606)
+++++. +|++++++|++||||||++..|++.+. ...|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccc
Confidence 577777 899999999999999999999999876 4567787766554
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0052 Score=63.52 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6688999999999999999999998875
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0016 Score=68.77 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=26.9
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+++..+++.+| +.+|.|+|||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46677777776 99999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00025 Score=74.35 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.0
Q ss_pred eeEEeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCC
Q psy10223 41 LILKDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888888899998 9999999999999999999754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0018 Score=61.09 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=28.8
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECCEe
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDGTP 91 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G~~ 91 (606)
-.+++|.|++|||||||++.|.+.+. +..-|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 35789999999999999999987642 2234777765543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0045 Score=76.62 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=25.7
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
=+++|+++.|.||||+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 4999999999999999999999988764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.002 Score=67.02 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=70.02 Aligned_cols=44 Identities=9% Similarity=0.196 Sum_probs=33.2
Q ss_pred EEEEeCCeEEEEEcCCCccHHHHHHHHHcCC----------CCCCeeEEEECCE
Q psy10223 47 SLEVRPGEVLAVLGSKGSGKRALLEVISRRS----------SGTTRGEIILDGT 90 (606)
Q Consensus 47 s~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~----------~~~~~G~I~~~G~ 90 (606)
-+.++.|..++|+|+||+|||||++.|+|.. ..+..|.+.+.+.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788899999999999999999999872 1145677777653
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=62.78 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998764
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.014 Score=60.21 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHH--h--hCCCEEEEeCCCCCC-----CH----------HHHHHHHHHHHH---HHHhCCcEEEEEecC
Q psy10223 164 SEHRRVVIGTQL--V--KDPVLLLLDEPTVNL-----DP----------LSTYLIVSMLSS---YAKRKSRAVLLTMEK 220 (606)
Q Consensus 164 GerqRvsIa~aL--~--~~p~llllDEPTsgL-----D~----------~~~~~i~~~L~~---l~~~~g~tii~t~h~ 220 (606)
+|+..+.++.++ + .+|++++.|--++=. +. ..++.+-+.|++ ++++.+.++|++-|-
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 565556666666 3 369999999776542 11 123344444544 577889999998663
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00029 Score=73.16 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=35.6
Q ss_pred ceeeEEeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 39 TALILKDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
...+++.++..+++|++ +++.||||+||||+++++++...
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 35688888899999999 99999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=59.26 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0022 Score=59.50 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.036 Score=57.05 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=24.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566779999999999999999999865
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0094 Score=53.78 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcch
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSD 224 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~ 224 (606)
+..++++||.- .|++..+..+.+.|... ..+..+|+++..+.++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~~~~ 119 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTSLVE 119 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESSCHHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCcCHHH
Confidence 45689999984 68888888888888432 2345677777766543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0016 Score=64.71 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=33.8
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCE
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~ 90 (606)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D 66 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGD 66 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecH
Confidence 344444 567889999999999999999999998754 144566653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.25 E-value=0.00038 Score=71.44 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=35.7
Q ss_pred Ee-eEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEe
Q psy10223 44 KD-ISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91 (606)
Q Consensus 44 ~~-vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~ 91 (606)
++ +++..+ |++++++|+||+||||++..|++... ...++|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecC
Confidence 45 777766 99999999999999999999998765 344566654433
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0011 Score=70.14 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=31.2
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|+.+.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999998753
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0022 Score=62.88 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=24.6
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999999999743
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0024 Score=59.87 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0029 Score=59.09 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998643
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0055 Score=67.11 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++..-++|.||+|+|||+|.+.|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455669999999999999999998764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.059 Score=66.87 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.4
Q ss_pred eEEeeE--EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 42 ILKDIS--LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 42 iL~~vs--~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-|+.+- +=+++|+++.|.||+|+|||||.-.++.
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 355543 3589999999999999999999877654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0027 Score=59.27 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999863
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.012 Score=73.72 Aligned_cols=76 Identities=8% Similarity=0.071 Sum_probs=48.1
Q ss_pred HHHHHHHh--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HHhCCcEEEEEecCCcc-------
Q psy10223 169 VVIGTQLV--KDPVLLLLDEPTVNLD-P------------LSTYLIVSMLSSY---AKRKSRAVLLTMEKPRS------- 223 (606)
Q Consensus 169 vsIa~aL~--~~p~llllDEPTsgLD-~------------~~~~~i~~~L~~l---~~~~g~tii~t~h~~~~------- 223 (606)
+.+++.++ .+|++++.|.-++=.. + ..+.++.+.|+++ +++.+.++|++.|....
T Consensus 450 l~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~ 529 (2050)
T 3cmu_A 450 LEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 529 (2050)
T ss_dssp HHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSC
T ss_pred HHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCC
Confidence 45555554 4799999998876542 1 1233455555555 67889999988653211
Q ss_pred --------hHHhcCCeEEEEcCCeEEEec
Q psy10223 224 --------DVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 224 --------~i~~~~D~v~vL~~G~~v~~G 244 (606)
.+...+|-++.|+..+....|
T Consensus 530 p~~psGg~ale~~ADv~l~L~R~~~~~~g 558 (2050)
T 3cmu_A 530 PETTTGGNALKFYASVRLDIRRIGAVKEG 558 (2050)
T ss_dssp CEECSSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred CcCCCCcchhhhhCCEEEEEEecccccCC
Confidence 256678889988776544333
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0034 Score=57.30 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=18.2
Q ss_pred EEEEEcCCCccHHHHHHHH
Q psy10223 55 VLAVLGSKGSGKRALLEVI 73 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L 73 (606)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0036 Score=61.84 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998653
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0036 Score=62.36 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=57.98 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0047 Score=58.66 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999987553
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0038 Score=58.20 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++..+.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999854
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0049 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q psy10223 54 EVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g 75 (606)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.005 Score=58.29 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+|-+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999999765
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0051 Score=59.25 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0048 Score=58.24 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999997543
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0054 Score=58.42 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|.+++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0051 Score=57.73 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0053 Score=56.97 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|+|||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.011 Score=55.32 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999877654
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0065 Score=56.75 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999854
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0055 Score=62.26 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=28.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G 89 (606)
.+|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEec
Confidence 4578999999999999999999986543 14455554
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0062 Score=58.06 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=23.7
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|-+++|.|++||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999864
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.006 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999875543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0067 Score=57.26 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0063 Score=56.74 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0036 Score=59.76 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.018 Score=54.97 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME---------KPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h---------~~~~~i~~~~D~v~vL~ 236 (606)
+.+++++||--- +|+. .++.|+.+++. |..||++-+ .++.++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999544 6643 35567777765 889999877 66778999999998775
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0079 Score=58.05 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|-.++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998653
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0065 Score=57.15 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.0
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++++.+++|.|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457789999999999999999998643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0071 Score=60.58 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999874
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0091 Score=57.95 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998643
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0069 Score=56.23 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=18.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0086 Score=54.03 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.074 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.566 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++.-++|.||+|+|||+|.+.|+....
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 466899999999999999999987643
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.01 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.01 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37999999999999999999754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=55.64 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|.|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999988754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.012 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+-+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0093 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
=.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=53.40 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.0084 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 7899999999999999998754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=56.64 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=53.17 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.011 Score=53.45 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0097 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7999999999999999998753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=55.97 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0066 Score=64.22 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEE
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIIL 87 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~ 87 (606)
.+..++|+|++|||||||++.|.+... ...+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-MQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-HCCCEEEE
Confidence 567899999999999999999987543 23355554
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.035 Score=53.92 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=42.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME---------KPRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h---------~~~~~i~~~~D~v~vL~ 236 (606)
+.+++++||--- ||.. .++.|+.+++. |..||++-. .++..+..++|.|.-|.
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6643 23667777664 889999988 78889999999999885
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.013 Score=58.39 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++.++.|.|++||||||+.+.|+..
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999865
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999998764
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=54.88 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.017 Score=60.77 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC----------CCCeeEEEECC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS----------GTTRGEIILDG 89 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~----------~~~~G~I~~~G 89 (606)
|-.++|+|.||+|||||++.|++... .+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 13457777765
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999865
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.013 Score=56.30 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.011 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=53.05 Aligned_cols=21 Identities=48% Similarity=0.582 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999874
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.033 Score=69.96 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=29.5
Q ss_pred EEeeEE--EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 43 LKDISL--EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 43 L~~vs~--~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|+.+-+ =+++|+++.|-|+||+|||||+..++...
T Consensus 720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 555553 69999999999999999999999888643
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.014 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998543
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.014 Score=56.86 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.3
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++..++.|+|||||||+|..+.|+-.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34566789999999999999999998543
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=56.94 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44578999999999999999998643
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.012 Score=54.96 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999763
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.015 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.014 Score=54.23 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.017 Score=52.82 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.-.++|+|++|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34468999999999999999998753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=54.91 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998643
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.0076 Score=59.14 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.1
Q ss_pred eCCeE-EEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEV-LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~-~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+.|++ +.+.|++|+||||++-.++..
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHH
Confidence 45666 777899999999996666544
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.013 Score=53.62 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.011 Score=54.83 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=58.78 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.014 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.017 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999854
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=54.24 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.016 Score=53.01 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 799999999999999999875
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.013 Score=54.28 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.013 Score=54.08 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999753
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.019 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445778999999999999999998654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=53.68 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=50.94 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=42.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC---------CcchHHhcCCeEEEEc
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK---------PRSDVLPFLDRTAYLC 236 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~---------~~~~i~~~~D~v~vL~ 236 (606)
.+.+++++||----.| +.+.++.+++ .|..||++-+. ++.++..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999977654 4555555554 68999999998 8899999999999875
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.03 Score=57.61 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.7
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
...+++....+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788887777 8999999999999999999998875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.015 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.58 E-value=0.016 Score=52.12 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999764
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=58.18 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
...++|.||+|+||||+.+.|++...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 36899999999999999999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.019 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|+|++|+|||||++.+.|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 68999999999999999998754
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.017 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.016 Score=52.90 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.018 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|-.++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998643
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998753
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.011 Score=54.45 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q psy10223 54 EVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g 75 (606)
=-++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999874
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.018 Score=52.73 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.02 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.| .++|+|++|+|||||++.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 58999999999999999999864
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.021 Score=55.41 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999854
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.019 Score=53.36 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.021 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.|+|||||||+|.-+.|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.022 Score=54.37 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.-+++|.|++||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999864
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.021 Score=56.43 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.018 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.022 Score=58.32 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.019 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999764
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.02 Score=53.85 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.037 Score=53.26 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=28.9
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..++..-.. ..|..++|+||+|||||||...|+.+.
T Consensus 23 ~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 456665554 468899999999999999999998653
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=53.69 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999865
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.02 Score=57.07 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999863
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.02 Score=52.88 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.=-++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998753
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.25 E-value=0.021 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.018 Score=57.77 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.|.+..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999998753
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.021 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.02 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.023 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.022 Score=52.41 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999999865
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.02 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999875
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.021 Score=53.43 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.022 Score=56.31 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.024 Score=53.25 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=52.22 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.024 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999998654
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.028 Score=54.82 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.04 Score=57.21 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++.+++|+||+|||||||...|+..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567999999999999999999997654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.023 Score=57.76 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.018 Score=54.35 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.024 Score=52.67 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3799999999999999999864
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.022 Score=59.98 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|+||+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999975
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.022 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999999754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.025 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHc
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.024 Score=55.69 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=21.6
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
...+|-++.|.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999998654
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.00 E-value=0.028 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++.|.|+|||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999863
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.024 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999853
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.027 Score=56.15 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999854
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.026 Score=52.33 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.016 Score=55.44 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.024 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.024 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.653 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.026 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.94 E-value=0.026 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.026 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.026 Score=53.22 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999999865
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.026 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.024 Score=53.45 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.026 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999865
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.027 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.87 E-value=0.027 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.049 Score=63.68 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999997653
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.027 Score=56.59 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.028 Score=53.12 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.031 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.028 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.021 Score=53.13 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.025 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.028 Score=52.82 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=21.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
=-++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357999999999999999998754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.027 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.79 E-value=0.024 Score=51.85 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.029 Score=59.99 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.+.+++.|+|+|||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999999754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.038 Score=53.57 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+|-++.+.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998654
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.029 Score=54.20 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.027 Score=56.60 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.037 Score=52.64 Aligned_cols=43 Identities=21% Similarity=0.229 Sum_probs=29.6
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
.+|.++++||.-. ||......+.+.+.+. ..+..+|++++.+.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 4678999999765 7887777777666542 23566777776543
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.028 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.64 E-value=0.029 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.035 Score=52.06 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=20.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
=-++|+|++|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.019 Score=58.37 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++-+++|.|++||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.034 Score=51.84 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999988864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.034 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.49 E-value=0.032 Score=53.18 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999753
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.023 Score=52.30 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=9.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999998864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.41 E-value=0.033 Score=52.46 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999998753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.037 Score=51.91 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 489999999999999999988643
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.031 Score=52.37 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.036 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.043 Score=54.14 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|.+++|.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998654
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.042 Score=52.59 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+-+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.049 Score=52.98 Aligned_cols=28 Identities=14% Similarity=0.366 Sum_probs=25.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|.++.+.|++||||||+.+.|+..+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999997665
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.04 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999865
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.051 Score=51.27 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC---------CcchHHhcCCeEEEEc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK---------PRSDVLPFLDRTAYLC 236 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~---------~~~~i~~~~D~v~vL~ 236 (606)
+++++++||-=. +|+ ++.+.|+.+++. +..++++-+. +...+.+++|.|.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 356677777765 8888887662 2234566778776654
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.16 Score=58.48 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+.+.||+|+|||+|.+.|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.049 Score=54.49 Aligned_cols=25 Identities=12% Similarity=0.413 Sum_probs=22.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-.++++|.||+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999998754
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.05 E-value=0.034 Score=55.17 Aligned_cols=28 Identities=11% Similarity=0.306 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987654
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.05 E-value=0.048 Score=56.76 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999997653
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.023 Score=54.18 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999988643
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=92.99 E-value=0.045 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.99 E-value=0.05 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.054 Score=52.92 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999997664
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.045 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.93 E-value=0.045 Score=51.71 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37999999999999999998653
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=0.056 Score=52.39 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|.++.+-|++||||||+.+.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.051 Score=53.39 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-.++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998543
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.16 Score=55.31 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHH--HHhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 158 ISELTPSEHRRVVIGT--QLVK---------------DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 158 v~~LSgGerqRvsIa~--aL~~---------------~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
.+++||||+|-.-+|. +++. .-.++++||. +-+|...+...+++++++ |.-+|+++
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiat-- 449 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAA-- 449 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEE--
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEEC--
Confidence 5689999999644443 3222 2257999999 999999999999999865 55566654
Q ss_pred CcchHHhcCCeEEEEc
Q psy10223 221 PRSDVLPFLDRTAYLC 236 (606)
Q Consensus 221 ~~~~i~~~~D~v~vL~ 236 (606)
|. .+.+..|.++.+.
T Consensus 450 P~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE-NISPERGTTYKLV 464 (483)
T ss_dssp SS-SCCCSSSEEEECC
T ss_pred cc-hhhhccCceEEEE
Confidence 43 6778889888875
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.049 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.063 Score=55.26 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.+++|+||+|||||||.+.|+....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45889999999999999999997653
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.75 E-value=0.057 Score=55.80 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+++|+||+|||||||-+.|+....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997653
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.066 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+|-++.+.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998654
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.032 Score=51.70 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.051 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.059 Score=54.31 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++.-+.|.||+|+|||||.+.++...
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 456679999999999999999988654
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=92.66 E-value=0.065 Score=58.06 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=27.5
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+++.+ ..+-+|+..+|+|+||+|||||++.|++.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 34444 44567999999999999999999998864
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.05 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
=-++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998853
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.63 E-value=0.024 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=4.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998865
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.054 Score=51.23 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999864
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.47 E-value=0.13 Score=48.25 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=27.0
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..++..-. ...|.=++|.|+||+|||||...|..+
T Consensus 5 ~~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFL-VIDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEE-EETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 34555444 457889999999999999999887653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.063 Score=50.36 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=28.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~ 221 (606)
.++.++++||. ..++......+.+.+... ..+..+|+++..+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCCh
Confidence 36889999995 456777777777776653 2345566666554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.051 Score=58.70 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999998853
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.06 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4889999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.28 E-value=0.06 Score=55.18 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 178 DPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 178 ~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
+++++++|| ...|++.....+.+.+.+.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 667999999 78899988888888887653 2344555665554
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.034 Score=55.04 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=22.2
Q ss_pred EEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 49 EVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 49 ~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
...+| +.|.||+|+|||||.+.|++..
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33445 7899999999999999999754
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.073 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+...++|.||+|+|||+|.+.|+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34467888999999999999999754
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=91.96 E-value=0.092 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+++|+||+|||||||...|+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999986543
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=91.93 E-value=0.082 Score=52.50 Aligned_cols=27 Identities=33% Similarity=0.348 Sum_probs=23.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-+.|.||+|+|||||.+.|+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455678999999999999999998753
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.098 Score=55.19 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=31.1
Q ss_pred eCCe-EEEEEcCCCccHHHHHHHHHcCCCC----------CCeeEEEECCEeC
Q psy10223 51 RPGE-VLAVLGSKGSGKRALLEVISRRSSG----------TTRGEIILDGTPM 92 (606)
Q Consensus 51 ~~Ge-~~~IlG~nGsGKSTLLk~L~g~~~~----------~~~G~I~~~G~~~ 92 (606)
+.|. -++|+|.|-+|||||+|.|+|.... +..|.+.++|..+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 3443 5899999999999999999985321 2247888877653
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.082 Score=54.69 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999997653
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=91.83 E-value=0.085 Score=54.03 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..-+.|.||+|+|||+|.+.|+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 455679999999999999999998754
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.083 Score=52.97 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.-+.|.||+|+|||||.+.|+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.1 Score=53.41 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+.-+.|.||+|+|||+|+++|+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999999864
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=91.59 E-value=0.059 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.54 E-value=0.12 Score=52.19 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.1
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-.++|+|.+|+|||||+|.|.|...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCce
Confidence 3689999999999999999998753
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.1 Score=54.41 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.-.++|+|++|+|||||++.|++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998653
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=91.46 E-value=0.086 Score=56.03 Aligned_cols=41 Identities=10% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 140 ~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
.++++++.++.... ...+|..|.+++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED----PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc----cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45666666665432 347899998888777777779998887
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.11 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-.+++|.||+|||||||.+.|+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999998654
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.038 Score=52.05 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
-++|+|++|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988864
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=91.21 E-value=0.19 Score=53.95 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++++|||||++.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.085 Score=56.58 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.13 E-value=0.11 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.061 Score=58.10 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=27.0
Q ss_pred EeeEEEEeCCeE--EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 44 KDISLEVRPGEV--LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 44 ~~vs~~v~~Ge~--~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.+.-.++.|.+ +.|.||+|+|||||.++|+....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444555665 89999999999999999998653
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=91.03 E-value=0.076 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHH-HHcC
Q psy10223 56 LAVLGSKGSGKRALLEV-ISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~-L~g~ 76 (606)
++|+|++|+|||||++. +.|.
T Consensus 18 i~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 78999999999999998 5553
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.01 E-value=0.12 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEcCCCccHHHHHHHHHcC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
--++|+|++|+|||||++.+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 606 | ||||
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-29 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-28 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-26 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-26 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-26 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-25 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 6e-23 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-22 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 8e-22 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-19 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-19 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 |
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (288), Expect = 1e-29
Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 11/224 (4%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG--TP 91
G + ILK IS E+ GE+ ++G G+GK L +IS + G + + G
Sbjct: 12 IGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVV 67
Query: 92 MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS 151
P + Y+ ++ + L + A S + + L
Sbjct: 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLG 124
Query: 152 NVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKS 211
+ +S + R+++I L+ +P L +LDEPT LD L+ + +L ++
Sbjct: 125 EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 184
Query: 212 RAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEYFRS 255
++ + +V DR A + G ++ G + E +++
Sbjct: 185 TILVSSHN--MLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 110 bits (277), Expect = 4e-28
Identities = 44/217 (20%), Positives = 88/217 (40%), Gaps = 9/217 (4%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ FGN + ++L ++ GE L +LG G GK L +I+ T G I
Sbjct: 14 KRFGNFT---AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRD 69
Query: 92 MSPQLFQTTC-GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
++ + V + P +TV + + + + + + + R+R L +
Sbjct: 70 VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQI 126
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+ R ++L+ + +RV + +V +P +LL+DEP NLD + + + ++
Sbjct: 127 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + + DR A + G L+ G
Sbjct: 187 KVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPT 222
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (276), Expect = 4e-28
Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 12/225 (5%)
Query: 32 RVFGNIQTAL-ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
+ + + + LK+++L ++ GE ++++G GSGK +L +I T GE+ +D
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNI 67
Query: 91 PMS-------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQ 143
+ ++ + G+V + +LIP LT + + +S R R +
Sbjct: 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE 127
Query: 144 VLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSM 202
L L A ++L+ + +RV I L +P ++L D+PT LD + I+ +
Sbjct: 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 203 LSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
L + + V++ +V F +R YL G++ R
Sbjct: 188 LKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGEVEREEKLR 230
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 109 bits (275), Expect = 1e-27
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 25/235 (10%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+G + +LK +SL+ R G+V++++GS GSGK L I+ + G II++G ++
Sbjct: 12 YGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNIN 67
Query: 94 ----------------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVR 137
+L +T V +L +TV + + A +G +S++
Sbjct: 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDA 125
Query: 138 NARIRQVLADLALSNVAR-RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLST 196
R + LA + + A+ + L+ + +RV I L +P +LL DEPT LDP
Sbjct: 126 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 197 YLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ ++ A+ V++T E +L G + G +
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTHE--MGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 105 bits (263), Expect = 3e-26
Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 12/227 (5%)
Query: 32 RVFGNIQTAL-ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGT 90
+VF + L ++SL V G++ V+G+ G+GK L+ ++ T G +++DG
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQ 67
Query: 91 PMS------PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
++ + G + +L+ S TV + L + R+ ++
Sbjct: 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTEL 124
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L+ + L + S L+ + +RV I L +P +LL DE T LDP +T I+ +L
Sbjct: 125 LSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLK 184
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
+R +LL + V D A + G+LI +
Sbjct: 185 DINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 103 bits (259), Expect = 4e-26
Identities = 43/194 (22%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+L+ I++ + G V+ G G GK LL+ IS +GEII +G P++ +
Sbjct: 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK--VKGKI 72
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISEL 161
++ + ++VE L A L V I L + + ++ ++ + EL
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVK-----VNKNEIMDALESVEVLDLKKK-LGEL 126
Query: 162 TPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP 221
+ RRV + + L+ + + +LD+P V +D S + ++ + K K ++ +
Sbjct: 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS---- 182
Query: 222 RSDVLPFLDRTAYL 235
+ L + D L
Sbjct: 183 -REELSYCDVNENL 195
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 104 bits (260), Expect = 9e-26
Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 20/228 (8%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
FG + L +S+ V G+V ++G GSGK L+ VI+ G + + ++
Sbjct: 14 FGEFK---ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDIT 69
Query: 94 P----QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYV----------RNA 139
+L+ + +TV + L ++
Sbjct: 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE 129
Query: 140 RIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199
+ ++L L LS++ R EL+ + + V IG L+ +P ++++DEP + P + I
Sbjct: 130 KAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 189
Query: 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ + + +++ VL ++D + G +I G
Sbjct: 190 FNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEGRGE 235
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 101 bits (252), Expect = 8e-25
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 22/226 (9%)
Query: 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---M 92
++ + L +S EVR GE+L ++G G+GK LL ++ +S +G I G P
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAW 65
Query: 93 SPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
S Y++ + + V L H R + V LAL +
Sbjct: 66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH--------DKTRTELLNDVAGALALDD 117
Query: 153 VARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVNLDPLSTYLIVSMLSS 205
R+ ++L+ E +RV + +++ LLLLDEP +LD + +LS+
Sbjct: 118 KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 177
Query: 206 YAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ A++++ + L R L G ++ +G +L
Sbjct: 178 LCQQG-LAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 96.4 bits (240), Expect = 6e-23
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 11/215 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
ILKDI+L + GE +A +G G GK L+ +I R T G+I++DG +
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLR 91
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA--LSNVARR 156
G V ++ S TV++ + + +V + A + +L
Sbjct: 92 NQIGLVQQDN-ILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+L+ + +R+ I + +P +L+LDE T LD S +I L +K ++ +++
Sbjct: 151 RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRT-TLIV 209
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + D+ + G ++ G R ++
Sbjct: 210 A---HRLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 1e-22
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 9/221 (4%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+ +G + + KDI+L++ GE + +G G GK LL +I+ + T G++ +
Sbjct: 8 KAWGEVV---VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKR 63
Query: 92 MS-PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
M+ + G V L P L+V + + + L+ + V N R+ QV L L
Sbjct: 64 MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQL 120
Query: 151 SNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRK 210
+++ R L+ + +RV IG LV +P + LLDEP NLD + +S KR
Sbjct: 121 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 211 SRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R ++ + + D+ L G + G +
Sbjct: 181 GRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.4 bits (232), Expect = 5e-22
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP-- 91
+ N L+L+ ++ +RPGEV A++G GSGK + ++ T G+++LDG P
Sbjct: 21 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLP 79
Query: 92 -MSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL 150
+ V + E Y +++ + ++ L
Sbjct: 80 QYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQ 139
Query: 151 SN--VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
S+L+ + + V + L++ P +L+LD+ T LD S + +L +
Sbjct: 140 GYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPE 199
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R SR+VLL + ++ D +L G + G + ++E
Sbjct: 200 RYSRSVLLITQ--HLSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 92.7 bits (230), Expect = 8e-22
Identities = 41/218 (18%), Positives = 83/218 (38%), Gaps = 13/218 (5%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVIS---RRSSGTTRGEIILDGT 90
+G I +K I L+V G+++ ++G+ G+GK L I+ R G
Sbjct: 16 YGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72
Query: 91 PMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA- 149
+ + + V + P LTV + L A+ + + + + +
Sbjct: 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN----RKDKEGIKRDLEWIFSLFPR 128
Query: 150 LSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKR 209
L ++ L+ E + + IG L+ P LL++DEP++ L P+ + ++ +
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188
Query: 210 KSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ +L+ L L G ++ G
Sbjct: 189 GTTILLVEQNA--LGALKVAHYGYVLETGQIVLEGKAS 224
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 92.3 bits (229), Expect = 9e-22
Identities = 54/227 (23%), Positives = 97/227 (42%), Gaps = 15/227 (6%)
Query: 32 RVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP 91
+VFG + ++++SLEV+ GE + +LG G GK L +I+ +RG+I +
Sbjct: 11 KVFGEVT---AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKL 66
Query: 92 MSP-------QLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQV 144
++ V L P +TV + + L +V R + R+R+V
Sbjct: 67 VADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREV 123
Query: 145 LADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLS 204
L L+ + R EL+ + +RV +G +V+ P + L+DEP NLD + + L
Sbjct: 124 AELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELK 183
Query: 205 SYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
++ + + + DR A + G L G + +
Sbjct: 184 KLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 92.2 bits (229), Expect = 1e-21
Identities = 45/215 (20%), Positives = 86/215 (40%), Gaps = 10/215 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS---PQLFQ 98
L++I+L++ G+ +A++G GSGK + +I+R G I++DG + +
Sbjct: 30 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLR 88
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL--ALSNVARR 156
V+ L Y Q+ R A + + L +
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 148
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
N L+ + +R+ I L++D +L+LDE T LD S I + L K ++ ++++
Sbjct: 149 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT-SLVI 207
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + D + G ++ G +L
Sbjct: 208 A---HRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.8 bits (220), Expect = 3e-20
Identities = 44/206 (21%), Positives = 83/206 (40%), Gaps = 18/206 (8%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTC 101
+LK+I+L + GE+LA+ GS GSGK +LL +I + G I G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-ASEGIIKHSG----------RV 99
Query: 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLA--LSNVARRNIS 159
+ + + ++P T+++ + + + V+ +++Q + A + V
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD-EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 157
Query: 160 ELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTME 219
L+ + R+ + + KD L LLD P LD + + +L+T
Sbjct: 158 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS- 216
Query: 220 KPRSDVLPFLDRTAYLCLGDLIYAGP 245
+ + L D+ L G + G
Sbjct: 217 --KMEHLRKADKILILHQGSSYFYGT 240
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.1 bits (210), Expect = 3e-19
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS------PQ 95
L ++++ + GE +LG G+GK + +I+ + GE+ D ++
Sbjct: 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVP 78
Query: 96 LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR 155
G V L P+LT + + + ++S+ R+ +V L + +V
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLN 135
Query: 156 RNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVL 215
EL+ ++ +RV + LVKDP LLLLDEP NLD +++ R +L
Sbjct: 136 HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
Query: 216 LTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+ P +D+ DR L G L+ G
Sbjct: 196 VVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 84.9 bits (210), Expect = 3e-19
Identities = 44/215 (20%), Positives = 95/215 (44%), Gaps = 10/215 (4%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG---TPMSPQLFQ 98
IL+DIS E +P ++A G G GK + ++ R T GEI +DG +S + ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWR 75
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVAR--R 156
+ G+V+ + ++ E Y + + + A R + ++
Sbjct: 76 SQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135
Query: 157 NISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+++ + +R+ I +++P +L+LDE T +LD S ++ L S K ++ +++
Sbjct: 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRT-TLVI 194
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + D+ ++ G + +G ++
Sbjct: 195 A---HRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 84.3 bits (208), Expect = 5e-19
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 13/219 (5%)
Query: 34 FGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMS 93
+ N L ++SL+V GE +LG G+GK LE+I+ + I+LDG ++
Sbjct: 11 WKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVT 65
Query: 94 -PQLFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN 152
+ +V L P + V++ L + + + R+ DL + +
Sbjct: 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM------KKIKDPKRVLDTARDLKIEH 119
Query: 153 VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSR 212
+ RN L+ E +RV + LV +P +LLLDEP LDP + MLS K+
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 213 AVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
VL + DR A + G LI G + E
Sbjct: 180 TVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 84.2 bits (208), Expect = 7e-19
Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 11/215 (5%)
Query: 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTP---MSPQLFQ 98
IL +I+L ++ GEV+ ++G GSGK L ++I R G++++DG P +
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLR 76
Query: 99 TTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNI 158
G V L + ++ + A +V + A +++L
Sbjct: 77 RQVGVVLQDNVL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135
Query: 159 --SELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLL 216
+ L+ + +R+ I LV +P +L+ DE T LD S ++I+ + K ++ +++
Sbjct: 136 QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRT-VIII 194
Query: 217 TMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251
R + DR + G ++ G + +L
Sbjct: 195 A---HRLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.8 bits (173), Expect = 2e-14
Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 14/219 (6%)
Query: 30 FQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89
++ GN + ++ E+ + +LG G+GK LE+I+ RGE+ L+G
Sbjct: 7 AEKRLGNFRL-----NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNG 59
Query: 90 TPMSPQ-LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL 148
++P + G+V L P L+V + + Y V R R+ R+R++ L
Sbjct: 60 ADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKL 114
Query: 149 ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAK 208
++++ R + L+ E +RV + LV P LLLLDEP +D + +++ L +
Sbjct: 115 GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174
Query: 209 RKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTR 247
+L + D A + G ++ G +
Sbjct: 175 EFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLK 212
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 606 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.81 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.56 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.12 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.0 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.8 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.63 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.27 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.23 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.84 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.51 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.51 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.07 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.05 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.0 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.94 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.9 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.89 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.78 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.63 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.57 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.57 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.57 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.55 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.52 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.45 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.42 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.41 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.36 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.33 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.24 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.21 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.19 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.18 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.16 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.13 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.07 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.03 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.0 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.95 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.94 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.92 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.89 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.85 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.84 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.82 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.8 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.78 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.77 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.77 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.74 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.69 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.67 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.66 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.64 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.6 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.59 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.58 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.57 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.55 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.54 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.52 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.52 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.45 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.42 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.41 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.4 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.39 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.38 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.38 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.35 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.33 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.32 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.31 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.29 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.2 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.17 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.09 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.06 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.06 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.98 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.86 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.81 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.78 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.74 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.73 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.71 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.64 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.58 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.53 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.48 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.47 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.47 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.25 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.22 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.2 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.17 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.17 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.15 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.12 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.09 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.05 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.05 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.04 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.01 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.0 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.99 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.95 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.88 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.88 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.73 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.62 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.57 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.46 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.44 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.44 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.39 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.36 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.35 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.24 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.18 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.17 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.15 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.09 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.06 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.05 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.02 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.99 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.99 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.99 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.98 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.87 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.86 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.76 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.75 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.74 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.7 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.68 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.64 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.59 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.43 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.4 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.38 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.34 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.32 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.24 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.22 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.21 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.12 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.91 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.75 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.65 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.61 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.59 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.53 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.51 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.39 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.17 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.06 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.04 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.99 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.76 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.75 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.73 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.6 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.32 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.32 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.26 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.15 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.98 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.94 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 89.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.68 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.62 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.53 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.37 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.24 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.94 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 88.66 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.96 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 87.51 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.3 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.76 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 86.76 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.67 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.5 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 86.26 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.03 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.85 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.54 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.38 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.58 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.47 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 84.1 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.03 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.85 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.27 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 81.71 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.51 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.31 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.2 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9e-54 Score=424.87 Aligned_cols=211 Identities=19% Similarity=0.331 Sum_probs=188.4
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~l 114 (606)
.++++++|+||||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|++++. ...++.+|||+|++.++|++
T Consensus 15 ~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l 93 (239)
T d1v43a3 15 RFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM 93 (239)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCGGGGTEEEEEC------CC
T ss_pred EECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC-CCCCEEEEcceecccCCcccceEEEEeechhhcccc
Confidence 3345789999999999999999999999999999999999998 899999999999864 23456799999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.|.++.+ +.++++.+++++++++.++|++.+|+++++|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 94 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~ 170 (239)
T d1v43a3 94 TVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 170 (239)
T ss_dssp CHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred hHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHH
Confidence 9999999887643 4678888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++.++++.|+++.++.|+|+|+++|+ .+++.++||||++|++|+++..|+++++.+
T Consensus 171 ~~~~i~~ll~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 226 (239)
T d1v43a3 171 LRVAMRAEIKKLQQKLKVTTIYVTHD-QVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226 (239)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999988779999999997 468999999999999999999999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-54 Score=424.19 Aligned_cols=211 Identities=26% Similarity=0.428 Sum_probs=156.7
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~l 114 (606)
+++.+++|+||||+|++||+++|+||||||||||||+|+|+.+ +++|+|.++|++++. ...++.+|||+|++.++|.+
T Consensus 9 ~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~-p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~ 87 (232)
T d2awna2 9 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87 (232)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC----
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCCEEEECCEECCCCchhhceeeeeccccccccch
Confidence 3456789999999999999999999999999999999999998 899999999999864 23467899999999999999
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPL 194 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~ 194 (606)
||+||+.|+...+ +.++++.+++++++++.++|.+..|+++++|||||||||+|||||+.+|++|+|||||+|||+.
T Consensus 88 tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~ 164 (232)
T d2awna2 88 SVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164 (232)
T ss_dssp --------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHH
T ss_pred hHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence 9999999987653 3456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++.++++.|+++.++.|+|+|+++|+ .+++.++|||+++|++|+++..|+++++.+
T Consensus 165 ~~~~i~~~l~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 165 LRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999988889999999986 568999999999999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.1e-53 Score=420.01 Aligned_cols=211 Identities=24% Similarity=0.395 Sum_probs=194.6
Q ss_pred cccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c----cccCeEEEEcCCC
Q psy10223 36 NIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q----LFQTTCGYVNHRT 108 (606)
Q Consensus 36 ~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~----~~~~~i~yv~q~~ 108 (606)
.++++++|+||||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. . ..|+.+|||+|++
T Consensus 12 ~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~-p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~ 90 (240)
T d1g2912 12 VFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY 90 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC
T ss_pred EECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC-CCCCEEEECCEEecccchhhhcccccccceecccch
Confidence 3445789999999999999999999999999999999999998 899999999998742 1 1357899999999
Q ss_pred CCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 109 DLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
.++|.+||+||+.++.+.+ +.++.+.+++++++++.++|++..|+++++|||||||||+|||||+.+|++|+|||||
T Consensus 91 ~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt 167 (240)
T d1g2912 91 ALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPL 167 (240)
T ss_dssp CCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred hhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 9999999999999998864 4677888899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|||+.++.++++.|+++.++.|.|+|+++|+ .+++.++||||++|++|++++.|+++++.+
T Consensus 168 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-~~~~~~~~drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhccCCEEEEEcCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999988779999999996 468999999999999999999999999853
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.2e-53 Score=420.42 Aligned_cols=208 Identities=25% Similarity=0.416 Sum_probs=192.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc------ccccCeEEEEcCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP------QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~------~~~~~~i~yv~q~~~~~~ 112 (606)
...+|+|||++|++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ...|+++|||+|++.++|
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~-p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p 95 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYP 95 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-CSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCT
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC-CCCceEEECCEEeecCchhhcchhhccceEEeccccccc
Confidence 4679999999999999999999999999999999999998 899999999998742 124678999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
++||+||+.|+++.+ +.++++.+++++++++.+||++..|+++++|||||||||+|||||+.+|++||+||||+|||
T Consensus 96 ~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD 172 (242)
T d1oxxk2 96 NLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172 (242)
T ss_dssp TSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred cccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCC
Confidence 999999999987643 46788888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+.++.++++.|+++.++.|.|+|+++|++ +++.++||||++|++|+++..|+++++.+
T Consensus 173 ~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 173 ARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp GGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999877799999999974 68999999999999999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-52 Score=416.83 Aligned_cols=205 Identities=25% Similarity=0.387 Sum_probs=190.3
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---c---cccCeEEEEcCCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---Q---LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~---~~~~~i~yv~q~~~~~~~ 113 (606)
.++|+||||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. + .+|+.+|||+|++.++|.
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~-p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~ 96 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSS 96 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC-CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTT
T ss_pred EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc-ccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCC
Confidence 468999999999999999999999999999999999998 899999999999743 1 255789999999999999
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q psy10223 114 LTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDP 193 (606)
Q Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~ 193 (606)
+||+||+.++++++ +.++++.++++.++|+.+||++..|+++++|||||||||+|||||+.+|++||+||||+|||+
T Consensus 97 ~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~ 173 (240)
T d3dhwc1 97 RTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173 (240)
T ss_dssp SBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCH
T ss_pred ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCH
Confidence 99999999998754 355667788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHH
Q psy10223 194 LSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLM 249 (606)
Q Consensus 194 ~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~ 249 (606)
.++.++++.|+++.++.|.|+|+++|+ .+++..+||||++|++|++++.|+++++
T Consensus 174 ~~~~~i~~~l~~l~~~~g~tvi~vTHd-l~~~~~~~dri~vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 174 ATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCVAVISNGELIEQDTVSEV 228 (240)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEBSC-HHHHHHHCSEEEEEETTEEEEEEETTTT
T ss_pred HHhhHHHHHHHHHHhccCCEEEEEcCC-HHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999988779999999996 4689999999999999999999999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.4e-52 Score=410.98 Aligned_cols=202 Identities=29% Similarity=0.462 Sum_probs=186.7
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
.+|+||||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ...++.+|||+|++.++|++||+||
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~-p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~en 92 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKN 92 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC-CCCCEEEEccEeccccchhHhcceeeccccccCccccHHHH
Confidence 48999999999999999999999999999999999998 899999999999864 2346689999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.|+...+. ... +++++++++.+++.+..|+++.+|||||||||+|||||+++|++|+|||||+|||+.++.++
T Consensus 93 l~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i 166 (229)
T d3d31a2 93 LEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166 (229)
T ss_dssp HHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHH
T ss_pred HHHHHhhcc---ccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHH
Confidence 999987642 222 35789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
.+.|+++.++.|.|+|+++|++ +++.++||||++|++|++++.|+++++.
T Consensus 167 ~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 167 REMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999888899999999974 6899999999999999999999999985
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=9.2e-52 Score=408.78 Aligned_cols=204 Identities=25% Similarity=0.400 Sum_probs=185.8
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---cc---c-cCeEEEEcCCCCCCC
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QL---F-QTTCGYVNHRTDLIP 112 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~---~-~~~i~yv~q~~~~~~ 112 (606)
..+|+||||+|++||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. +. + |+.+|||+|++.++|
T Consensus 18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~-p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~ 96 (230)
T d1l2ta_ 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP 96 (230)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC-CCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCc
Confidence 458999999999999999999999999999999999988 899999999999853 11 2 457999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCch-hhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSN-VARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNL 191 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgL 191 (606)
.+||.||+.++...+.....+..+..+++.++|+.++|.+ ..++++.+|||||||||+|||||+++|++|++||||+||
T Consensus 97 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~L 176 (230)
T d1l2ta_ 97 LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176 (230)
T ss_dssp TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCcccc
Confidence 9999999999988754445677788889999999999976 689999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecCh
Q psy10223 192 DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPT 246 (606)
Q Consensus 192 D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~ 246 (606)
|+.++.++++.|+++.++.|+|+|+++|++ + +.++||||++|++|+++.+|++
T Consensus 177 D~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~-~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEEECSCH-H-HHTTSSEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhhCCEEEEECCCH-H-HHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999888899999999975 3 4589999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.9e-50 Score=399.70 Aligned_cols=212 Identities=22% Similarity=0.325 Sum_probs=194.9
Q ss_pred ccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc--ccccCeEEEEcCCCCCCC
Q psy10223 35 GNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP--QLFQTTCGYVNHRTDLIP 112 (606)
Q Consensus 35 ~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~--~~~~~~i~yv~q~~~~~~ 112 (606)
++++++++|+||||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++.. ...|+.++|+||++.+++
T Consensus 10 k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~-p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~ 88 (238)
T d1vpla_ 10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 88 (238)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCT
T ss_pred EEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCCEEEECcEecccChHHHHhhEeEeeeccccCC
Confidence 34556889999999999999999999999999999999999998 899999999999754 346788999999999999
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q psy10223 113 SLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLD 192 (606)
Q Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD 192 (606)
++||.||+.+...++ ..++.+..++++++++.+++.+..++++++|||||||||+||+||+++|++++|||||+|||
T Consensus 89 ~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD 165 (238)
T d1vpla_ 89 NMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 165 (238)
T ss_dssp TSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred CccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCC
Confidence 999999999988764 34566777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHHH
Q psy10223 193 PLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLEY 252 (606)
Q Consensus 193 ~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~~ 252 (606)
+.++.++.++|++++++ |+|||+++|+ .+++.++||||++|++|++++.|+++++.+.
T Consensus 166 ~~~~~~i~~~i~~~~~~-g~tii~~tH~-l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 166 VLNAREVRKILKQASQE-GLTILVSSHN-MLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEEEEECC-HHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 99999999999999865 8999999997 4689999999999999999999999999764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.6e-50 Score=402.38 Aligned_cols=219 Identities=21% Similarity=0.370 Sum_probs=190.6
Q ss_pred ccEEEEE-EEEeecccccCceeeeeeccccceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEEC
Q psy10223 10 EEYYLKI-DLQHPALVETGSCFQRVFGNIQTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILD 88 (606)
Q Consensus 10 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~ 88 (606)
.|+.|++ |+.. .| +++++|+||||+|++||+++|+||||||||||+|+|+|+.+ +++|+|.++
T Consensus 3 sd~~Lev~~l~k------------~y---g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~-p~~G~I~~~ 66 (240)
T d1ji0a_ 3 SDIVLEVQSLHV------------YY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-AQKGKIIFN 66 (240)
T ss_dssp CSEEEEEEEEEE------------EE---TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEET
T ss_pred cceEEEEeeEEE------------EE---CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-CCccEEEec
Confidence 3677888 7633 33 35689999999999999999999999999999999999998 899999999
Q ss_pred CEeCCcc----cccCeEEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-CCchhhcccCCCCCH
Q psy10223 89 GTPMSPQ----LFQTTCGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADL-ALSNVARRNISELTP 163 (606)
Q Consensus 89 G~~~~~~----~~~~~i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~LSg 163 (606)
|+++... ..|..++|++|+..+||.+||+||+.+.+.... .+...+++++++++.+ ++++..++++++|||
T Consensus 67 G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSG 142 (240)
T d1ji0a_ 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSG 142 (240)
T ss_dssp TEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCH
T ss_pred ccccccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCchhhCCH
Confidence 9998642 124569999999999999999999988765321 2233445567777776 788999999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEe
Q psy10223 164 SEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYA 243 (606)
Q Consensus 164 GerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~ 243 (606)
||||||+|||||+++|++|+|||||+|||+.++.++++.|++++++ |+|||+++|+ .+++.++||||++|++|++++.
T Consensus 143 G~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH~-l~~~~~~~drv~vl~~G~iv~~ 220 (240)
T d1ji0a_ 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQN-ALGALKVAHYGYVLETGQIVLE 220 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEESC-HHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCC-HHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999986 4689999999999999999999
Q ss_pred cChhHHH
Q psy10223 244 GPTRLML 250 (606)
Q Consensus 244 G~~~~~~ 250 (606)
|+++++.
T Consensus 221 g~~~el~ 227 (240)
T d1ji0a_ 221 GKASELL 227 (240)
T ss_dssp EEHHHHH
T ss_pred cCHHHHh
Confidence 9999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.3e-50 Score=399.80 Aligned_cols=199 Identities=25% Similarity=0.435 Sum_probs=184.5
Q ss_pred eeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc-ccccCeEEEEcCCCCCCCCCCHHHHHHHH
Q psy10223 45 DISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP-QLFQTTCGYVNHRTDLIPSLTVEQTLYYA 123 (606)
Q Consensus 45 ~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~-~~~~~~i~yv~q~~~~~~~lTV~e~l~f~ 123 (606)
|||++++ ||+++|+||||||||||||+|+|+.+ |++|+|.++|+++.. ...|+.+|||+|++.++|++||+||+.|+
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~ 94 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG 94 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC-CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC-CCceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhh
Confidence 8999995 68999999999999999999999998 899999999999864 23567899999999999999999999987
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q psy10223 124 AHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSML 203 (606)
Q Consensus 124 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L 203 (606)
++ ..++.+.+++++++++.+||.+..++++++|||||||||+|||||+++|++|+|||||+|||+.++.++.+.|
T Consensus 95 l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i 169 (240)
T d2onka1 95 LR-----NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169 (240)
T ss_dssp CT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHH
T ss_pred hc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHH
Confidence 53 3567777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 204 SSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 204 ~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++++++.|.|+|+++|+. +++.++||||++|++|+++..|+++++.+
T Consensus 170 ~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 170 RFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 999887799999999974 68999999999999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-49 Score=400.69 Aligned_cols=209 Identities=23% Similarity=0.358 Sum_probs=188.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----------------cccCeE
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----------------LFQTTC 101 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----------------~~~~~i 101 (606)
+.+++|+||||+|++||+++|+||||||||||+|+|+|+.+ +++|+|.++|+++... ..++++
T Consensus 13 g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~-p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 13 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc-CCCCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 45689999999999999999999999999999999999988 7999999999987521 245679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-hcccCCCCCHHHHHHHHHHHHHhhCCC
Q psy10223 102 GYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-ARRNISELTPSEHRRVVIGTQLVKDPV 180 (606)
Q Consensus 102 ~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~LSgGerqRvsIa~aL~~~p~ 180 (606)
|||+|++.++|.+||.||+.++.... ...++.+.++++.++++.+++.+. .++++++|||||||||+|||||+.+|+
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~ 169 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPD 169 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEEEechhhccchhcchhhhhhHHHh--cCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999875322 245677888899999999999874 578899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 181 LLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 181 llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
+|++||||+|||+.++.++++.|++++++ |+|+|+++|+ .+++..+||||++|++|++++.|+++++..
T Consensus 170 llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vtHd-l~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 170 VLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHE-MGFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSC-HHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEeccccccCCHHHHHHHHHhhhhhccc-CCceEEEeCC-HHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999874 8999999986 568999999999999999999999999854
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-49 Score=397.00 Aligned_cols=211 Identities=20% Similarity=0.288 Sum_probs=186.4
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcc----cccCeEEEEcCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQ----LFQTTCGYVNHRTDLIPS 113 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~----~~~~~i~yv~q~~~~~~~ 113 (606)
+.+++|+||||++++||+++|+||||||||||+|+|+|+.+ +++|+|.++|+++... ..+..++|++|++.+++.
T Consensus 15 g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~-p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 15 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc-CCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 45689999999999999999999999999999999999998 8999999999998542 234469999999999999
Q ss_pred CCHHHHHHHHHHccC----------CCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 114 LTVEQTLYYAAHLSI----------GPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 114 lTV~e~l~f~~~~~~----------~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
+||.||+.++...+. .....+++..+++.++++.+++.+..|+++++|||||||||+|||||+.+|++|+
T Consensus 94 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~lli 173 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIV 173 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred CeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchh
Confidence 999999988643211 1112334556788999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||+|||+.++.++++.|+++++ .|+|||+++|+. +++.++||||++|++|++++.|+++|..+
T Consensus 174 lDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl-~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 174 MDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRL-DIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCC-STTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 9999999999999999999999976 599999999864 68999999999999999999999988654
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-47 Score=383.50 Aligned_cols=205 Identities=22% Similarity=0.415 Sum_probs=173.1
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++.+|+||||+|++||+++|+||||||||||+|+|+|+.+ |.+|+|.+||+++.. +.+|+.++||+|++.+|+ .|
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 103 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ-PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RS 103 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCcCEEEECCEecchhhhHHHHHHhhhccccccccC-cc
Confidence 4579999999999999999999999999999999999998 789999999999854 346788999999999886 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHH-----HHHHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRN-----ARIRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
|+||+.++... ........ ....+.++.+ ++....++....|||||||||+|||||+++|+|++|||||
T Consensus 104 v~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpT 179 (251)
T d1jj7a_ 104 LQENIAYGLTQ----KPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDAT 179 (251)
T ss_dssp HHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcC
Confidence 99999886431 12222111 1222344444 4455556677899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++||+.+..++++.|+++.++.++|+|+++|+. +..+.||||++|++|++++.|+++++++
T Consensus 180 s~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 180 SALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEGGAIREGGTHQQLME 240 (251)
T ss_dssp TTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred cccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH--HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998877789999999985 3557799999999999999999999875
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-46 Score=375.45 Aligned_cols=199 Identities=23% Similarity=0.384 Sum_probs=167.7
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCC
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSL 114 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~l 114 (606)
+.+.+|+||||+|++||.+||+||||||||||+|+|+|+.+ +.+|+|.+||+++.. ..+|+.++||+|++.+|+ .
T Consensus 14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ 91 (241)
T d2pmka1 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 91 (241)
T ss_dssp TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC-CCCCEEEECCEEecccchhhhhceEEEEecccccCC-c
Confidence 34679999999999999999999999999999999999998 789999999999854 457889999999998886 5
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCC-----------chhhcccCCCCCHHHHHHHHHHHHHhhCCCEEE
Q psy10223 115 TVEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLAL-----------SNVARRNISELTPSEHRRVVIGTQLVKDPVLLL 183 (606)
Q Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL-----------~~~~~~~v~~LSgGerqRvsIa~aL~~~p~lll 183 (606)
||+||+.++.. ..+.++ +.+.++..++ ....+.....|||||||||+|||||+.+|+|++
T Consensus 92 Ti~eNi~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ili 162 (241)
T d2pmka1 92 SIIDNISLANP-----GMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILI 162 (241)
T ss_dssp BHHHHHCTTST-----TCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cccccccccCc-----cccHHH----HHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhh
Confidence 99999987532 233322 2233333222 223344567999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 184 LDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 184 lDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
|||||++||+.++.++++.|+++.+ ++|+|+++|++. ..+.||||++|++|+++++|+++++++
T Consensus 163 lDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~i~vl~~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 163 FDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226 (241)
T ss_dssp ECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGG--GGTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred hhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999863 789999999863 457899999999999999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.8e-46 Score=374.94 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=167.0
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
++++|+||||++++||+++|+||||||||||+|+|+|+.+ |.+|+|.+||.+++. +.+|++++||+|++.+|+. |
T Consensus 14 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-t 91 (242)
T d1mv5a_ 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-T 91 (242)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-E
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC-CCCCEEEECCEEeccccHHHHHhheEEEccccccCCc-c
Confidence 4579999999999999999999999999999999999998 789999999999864 4578899999999999987 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCc-------hhhcc----cCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALS-------NVARR----NISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~----~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.+... ...+.. .+.+.++..++. +..++ ....|||||||||+|||||+.+|+|++|
T Consensus 92 i~eNi~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ilil 163 (242)
T d1mv5a_ 92 IRENLTYGLE----GDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163 (242)
T ss_dssp HHHHTTSCTT----SCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred hhhheecccc----cccchh----hHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999976543 122332 233333333332 22233 3457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.++.++++.|+++++ ++|+|+++|++ + ....||||++|++|++++.|+++++++
T Consensus 164 DEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~-~~~~~D~i~vl~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 164 DEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL-S-TIVDADKIYFIEKGQITGSGKHNELVA 226 (242)
T ss_dssp ECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH-H-HHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred cCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCH-H-HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999863 79999999975 3 446799999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.5e-45 Score=365.88 Aligned_cols=203 Identities=24% Similarity=0.377 Sum_probs=169.4
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|||++|++||++||+||||||||||+++|+|+.+ |.+|+|.+||.++.. ..+|+.++|++|++.+++. |
T Consensus 27 ~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-t 104 (253)
T d3b60a1 27 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD-IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-T 104 (253)
T ss_dssp SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC-CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC-CCccEEEECCcccchhhhhhhhheEEEEeeccccCCc-c
Confidence 3579999999999999999999999999999999999998 789999999999864 3467889999999988864 9
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHH-----HHHHHHHc--CCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNAR-----IRQVLADL--ALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPT 188 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~-----v~~~l~~l--gL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPT 188 (606)
+++|+.++.. ...+.++..+. +.+.++.+ |++...++.+..|||||||||+|||||+.+|+||+|||||
T Consensus 105 i~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpt 180 (253)
T d3b60a1 105 VANNIAYART----EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180 (253)
T ss_dssp HHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred hhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 9999987532 22343322211 12233333 4444555667789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 189 VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 189 sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
++||+.++..+++.|+++.+ ++|+|+++|+.. ..+.||||++|++|++++.|+++++++
T Consensus 181 s~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~--~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 181 SALDTESERAIQAALDELQK--NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp SSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999863 789999999863 457899999999999999999999875
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.5e-45 Score=370.36 Aligned_cols=198 Identities=24% Similarity=0.399 Sum_probs=168.7
Q ss_pred ceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCC
Q psy10223 39 TALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLT 115 (606)
Q Consensus 39 ~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lT 115 (606)
.+++|+|||++|++||.++|+||||||||||+|+|+|+.+ +.+|+|.++|.++.. ..+|+.++||+|++.+|+ .|
T Consensus 30 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~T 107 (255)
T d2hyda1 30 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD-VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DT 107 (255)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC-CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SB
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC-ccccccccCCEEcccCCHHHhhheeeeeeccccCCC-CC
Confidence 3579999999999999999999999999999999999998 889999999998753 457889999999998886 59
Q ss_pred HHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchh-------hc----ccCCCCCHHHHHHHHHHHHHhhCCCEEEE
Q psy10223 116 VEQTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNV-------AR----RNISELTPSEHRRVVIGTQLVKDPVLLLL 184 (606)
Q Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~----~~v~~LSgGerqRvsIa~aL~~~p~llll 184 (606)
|+||+.++.. ..+. +++.++++..++.+. .+ .....||||||||++|||||+.+|+|++|
T Consensus 108 i~eNi~~g~~-----~~~~----~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ilil 178 (255)
T d2hyda1 108 VKENILLGRP-----TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILIL 178 (255)
T ss_dssp HHHHHGGGCS-----SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHhccCc-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999987531 2233 234555665555332 23 33467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 185 DEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 185 DEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||||++||+.+...+++.|+++.+ ++|+|+++|++. ..+.||||++|++|+++..|+++++++
T Consensus 179 DEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~--~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 179 DEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLS--TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGG--GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred eCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH--HHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999863 789999999863 457899999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-43 Score=348.96 Aligned_cols=198 Identities=26% Similarity=0.374 Sum_probs=174.4
Q ss_pred eeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCc---ccccCeEEEEcCCCCCCCCCCHH
Q psy10223 41 LILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSP---QLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 41 ~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~---~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
..|+||||+|++||+++|+||||||||||+|+|+|+.+ .+|+|.++|+++.. ...+...+|++|+.......++.
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~--~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC--CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 36999999999999999999999999999999999753 67999999998743 23445689999998777778999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhh-------CCCEEEEeCCCCC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVK-------DPVLLLLDEPTVN 190 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~-------~p~llllDEPTsg 190 (606)
+++.+...- . ...++++++++.+++.+..+++++.|||||||||+||++|++ +|+|++|||||+|
T Consensus 91 ~~~~~~~~~----~----~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~g 162 (231)
T d1l7vc_ 91 HYLTLHQHD----K----TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 162 (231)
T ss_dssp HHHHHHCSC----T----TCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTT
T ss_pred HHhhhccch----h----hHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCC
Confidence 998875431 1 124567889999999999999999999999999999999997 7799999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHH
Q psy10223 191 LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLML 250 (606)
Q Consensus 191 LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~ 250 (606)
||+.++..+.++|+++++ .|+|||+++|+ .+++.++|||+++|++|++++.|+++++.
T Consensus 163 LD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 163 LDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRAWLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBCCBEETTEECCCSBHHHHS
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEeCC-HHHHHHHCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999976 59999999987 46899999999999999999999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-42 Score=348.98 Aligned_cols=189 Identities=22% Similarity=0.336 Sum_probs=155.5
Q ss_pred cceeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHH
Q psy10223 38 QTALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVE 117 (606)
Q Consensus 38 ~~~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~ 117 (606)
..+++|+|||++|++||+++|+||||||||||||+|+|+++ +.+|+|.++| +++|++|++.++|. ||+
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~-p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~ 114 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE-ASEGIIKHSG----------RVSFCSQFSWIMPG-TIK 114 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-CSEEEEECCS----------CEEEECSSCCCCSE-EHH
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc-CCCcEEEECC----------EEEEEeccccccCc-eee
Confidence 34689999999999999999999999999999999999998 7899999887 48999999998875 999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHc-------CCchh----hcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeC
Q psy10223 118 QTLYYAAHLSIGPQVSRYVRNARIRQVLADL-------ALSNV----ARRNISELTPSEHRRVVIGTQLVKDPVLLLLDE 186 (606)
Q Consensus 118 e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~----~~~~v~~LSgGerqRvsIa~aL~~~p~llllDE 186 (606)
||+.++.. ..... .+++++.. .+.+. .++....|||||||||+|||||+++|+||+|||
T Consensus 115 eni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 115 ENIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cccccccc------ccchH----HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcC
Confidence 99987532 22221 22333322 22222 234456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcCCeEEEecChhHHHH
Q psy10223 187 PTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCLGDLIYAGPTRLMLE 251 (606)
Q Consensus 187 PTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G~~~~~~~ 251 (606)
||++||+.+..++++.+....+ .++|+|+++|+. +..+.||||++|++|+++++|++++++.
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH--HHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechH--HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999876444333 478999999975 4567899999999999999999999865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.6e-41 Score=325.65 Aligned_cols=184 Identities=24% Similarity=0.389 Sum_probs=158.9
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
+++|+|||++|++||+++|+||||||||||+|+|+|+.+ |.+|+|.+||+++. ..+..++|++|+..+++.+|++|+
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~-p~~G~I~~~g~~i~--~~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHHH
T ss_pred CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc-cCCCEEEECCEehh--HhcCcEEEEeecccCCCCcCHHHH
Confidence 469999999999999999999999999999999999998 89999999999985 357789999999999999999999
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLI 199 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i 199 (606)
+.+...+... ...+ +++.+.++.+++.+ .++++++|||||||||+||++|+.+|++++|||||+|||+.++.++
T Consensus 91 l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i 164 (200)
T d1sgwa_ 91 LKAVASLYGV-KVNK----NEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKV 164 (200)
T ss_dssp HHHHHHHTTC-CCCH----HHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHH
T ss_pred HHHHHHhcCC-ccCH----HHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHH
Confidence 9998776422 2332 34667888888765 3567899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEEEEcC
Q psy10223 200 VSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTAYLCL 237 (606)
Q Consensus 200 ~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~vL~~ 237 (606)
++.|+++.++.+ ++|+++||. .++||++.+|++
T Consensus 165 ~~~l~~~~~~~~-~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 165 LKSILEILKEKG-IVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHS-EEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHhCCC-EEEEEEech----hhhcchhhheee
Confidence 999999987644 555555654 357999999875
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.56 E-value=9.2e-17 Score=149.60 Aligned_cols=157 Identities=14% Similarity=0.061 Sum_probs=99.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCe--EEEEcCCCCCCCCCCHHHHHHHHHHccCCCCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTT--CGYVNHRTDLIPSLTVEQTLYYAAHLSIGPQVS 133 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~--i~yv~q~~~~~~~lTV~e~l~f~~~~~~~~~~~ 133 (606)
++|+||||||||||+|+|+|.++ +..|.+...+.+......+.. +.+...........+..+. .. ..
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------~~ 71 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG-KRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSK----KL------VG 71 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG-GGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCS----SE------ET
T ss_pred EEEECCCCcHHHHHHHHHHhcCC-CCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhh----hh------hh
Confidence 78999999999999999999987 677888887765432111111 1111000000000000000 00 00
Q ss_pred HHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q psy10223 134 RYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRA 213 (606)
Q Consensus 134 ~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~t 213 (606)
+ . ..+.....+|+|+++|.++++++..+|+++++|||... ......+.+.|.+..+..+.+
T Consensus 72 ~-------------~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~ 132 (178)
T d1ye8a1 72 S-------------Y----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVN 132 (178)
T ss_dssp T-------------E----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSE
T ss_pred h-------------h----hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccCCCE
Confidence 0 0 00111124789999999999999999999999998543 334456677777766666889
Q ss_pred EEEEecCCcchHHhcCCeEEEEcCCeEEEec
Q psy10223 214 VLLTMEKPRSDVLPFLDRTAYLCLGDLIYAG 244 (606)
Q Consensus 214 ii~t~h~~~~~i~~~~D~v~vL~~G~~v~~G 244 (606)
+|+++|+. ....++|++..+.+|+++.-+
T Consensus 133 il~~~h~~--~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 133 VVATIPIR--DVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp EEEECCSS--CCSHHHHHHHTCTTCEEEECC
T ss_pred EEEEEccH--HHHHhhceEEEEeCCEEEEEC
Confidence 99998874 467789999999999987644
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.00 E-value=7.7e-09 Score=103.48 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 158 ISELTPSEHRRVVIGTQL----VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
+..+|+|||+...++..+ ..+|+++++|||-++|||.....+.+.|++.++ +.-+|+|+|.| .+.+.+|++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp--~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhcccEE
Confidence 467999999998877653 456799999999999999999999999999864 46789999987 6789999986
Q ss_pred E--EcCC
Q psy10223 234 Y--LCLG 238 (606)
Q Consensus 234 v--L~~G 238 (606)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 6 4556
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.63 E-value=2.4e-08 Score=103.73 Aligned_cols=75 Identities=13% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCCCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCeEE
Q psy10223 158 ISELTPSEHRRVVIGTQL----VKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDRTA 233 (606)
Q Consensus 158 v~~LSgGerqRvsIa~aL----~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~v~ 233 (606)
+..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++. .+.-+|++||+| .+.+.+|+.+
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEE
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEE
Confidence 356899999998877544 457789999999999999999999999998864 356789999986 6899999987
Q ss_pred EE
Q psy10223 234 YL 235 (606)
Q Consensus 234 vL 235 (606)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.27 E-value=9.5e-06 Score=77.66 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=35.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCcEEEEEecCCcchHHhc
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSMLS-SYAKRKSRAVLLTMEKPRSDVLPF 228 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~L~-~l~~~~g~tii~t~h~~~~~i~~~ 228 (606)
+.+..++++||+.+|=|+.....+...+- .+.+ .+..+++++|+. ++.++
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTC
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeech--hhhhh
Confidence 45667999999999999988777655444 4454 467778888864 45443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.23 E-value=4.4e-06 Score=80.63 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=35.7
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCC
Q psy10223 176 VKDPVLLLLDEPTVNLDPLSTYLIVSM-LSSYAKRKSRAVLLTMEKP 221 (606)
Q Consensus 176 ~~~p~llllDEPTsgLD~~~~~~i~~~-L~~l~~~~g~tii~t~h~~ 221 (606)
+++..++++||+.+|=|+.....+... ++.+..+.+..+++|+|..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 455679999999999999999888655 6667665566777777754
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.84 E-value=6.6e-05 Score=73.08 Aligned_cols=155 Identities=17% Similarity=0.174 Sum_probs=77.1
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHHHHH
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQTLYY 122 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~l~f 122 (606)
|+++.+=+.+||++.|.|+||+|||||+.-|+-... ...| ..+.|+.- .++..+...-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a-~~~g---------------~~v~~~s~------E~~~~~~~~r 82 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-TAMG---------------KKVGLAML------EESVEETAED 82 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHH-HTSC---------------CCEEEEES------SSCHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhh-hhcc---------------cceeEeee------ccchhhHHhH
Confidence 444443479999999999999999999887763210 0001 12344332 2345544322
Q ss_pred HHHc--cCCCCCCHHH-----HHHHHHHHHHHcCCchhhccc--CCCCCHHHHHHHHHHHHHhhCCCEEEEeCCC-----
Q psy10223 123 AAHL--SIGPQVSRYV-----RNARIRQVLADLALSNVARRN--ISELTPSEHRRVVIGTQLVKDPVLLLLDEPT----- 188 (606)
Q Consensus 123 ~~~~--~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~--v~~LSgGerqRvsIa~aL~~~p~llllDEPT----- 188 (606)
.... ..+....... ...+.+++++.+.-....... ....+..+.....-...--.+|+++++|--+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~ 162 (277)
T d1cr2a_ 83 LIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA 162 (277)
T ss_dssp HHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC----
T ss_pred HHHHhhcCCchhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEccccccccc
Confidence 1111 1110011110 111234444433111111111 2233333322222222334579999999531
Q ss_pred CCC--CHHHHHHHHHHHHHHHHhCCcEEEEEec
Q psy10223 189 VNL--DPLSTYLIVSMLSSYAKRKSRAVLLTME 219 (606)
Q Consensus 189 sgL--D~~~~~~i~~~L~~l~~~~g~tii~t~h 219 (606)
.+- +.....++++.|+++|++.+.+|++++|
T Consensus 163 ~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q 195 (277)
T d1cr2a_ 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICH 195 (277)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred ccccchhHHHHHHHHHHHHHhhhccccceeecc
Confidence 111 1134566788899999998999888766
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.00024 Score=68.60 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=79.4
Q ss_pred eeeEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCCCCCCCCCCHHHH
Q psy10223 40 ALILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHRTDLIPSLTVEQT 119 (606)
Q Consensus 40 ~~iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~~~~~~~lTV~e~ 119 (606)
..++.+ +.||+++.|.|++|+|||||+-.|+-... .|.= +.+.... -...+.|+.-++.. -.+.+-
T Consensus 20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia---~g~~-~~~~~~~---~~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHH
T ss_pred HHHhCC----ccCCcEEEEEeCCCCCHHHHHHHHHHHHH---cCCC-ccccccc---CCCceEEEeccchH---HHHHHH
Confidence 346655 34699999999999999999876653211 0000 0011111 12346666544310 011111
Q ss_pred HHHHHHccCCCCCCHHHHHHHHHHHHHHcCCchhhcccCCCCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-----CCCHH
Q psy10223 120 LYYAAHLSIGPQVSRYVRNARIRQVLADLALSNVARRNISELTPSEHRRVVIGTQLVKDPVLLLLDEPTV-----NLDPL 194 (606)
Q Consensus 120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~LSgGerqRvsIa~aL~~~p~llllDEPTs-----gLD~~ 194 (606)
+ .... ....... .......+.+.+..+.......- +.+.-...-..+|+++++|.-++ --|..
T Consensus 86 l--~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~~~~~ 153 (274)
T d1nlfa_ 86 L--HALG---AHLSAEE----RQAVADGLLIQPLIGSLPNIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEENASG 153 (274)
T ss_dssp H--HHHH---TTSCHHH----HHHHHHHEEECCCTTSCCCTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred H--HHHh---hccChhh----hhcccccceeccccCccchhHHH---HHHHHHHHhccCccEEecCchhhhccccccchh
Confidence 1 1110 1122211 12222233222222222222211 22222233457999999996543 23667
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecC
Q psy10223 195 STYLIVSMLSSYAKRKSRAVLLTMEK 220 (606)
Q Consensus 195 ~~~~i~~~L~~l~~~~g~tii~t~h~ 220 (606)
...++++.|+.++++.++++++++|.
T Consensus 154 ~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 154 PMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hHHHHHHHHHHHhhcCCCceehhhhc
Confidence 77889999999998889999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.51 E-value=0.00067 Score=64.02 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=44.8
Q ss_pred hCCCEEEEeCCC---CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC---------cchHHhcCCeEEEEcC
Q psy10223 177 KDPVLLLLDEPT---VNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKP---------RSDVLPFLDRTAYLCL 237 (606)
Q Consensus 177 ~~p~llllDEPT---sgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~---------~~~i~~~~D~v~vL~~ 237 (606)
.+|++++.|--+ .+.+.......+..|.+++++.+.+++++.|.. ...+..++|-|+.|+.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 578999988653 355777777788888888888899988887642 1235667888888753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=1.5e-05 Score=72.60 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=28.2
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.++.++.+.+| +++|+|||||||||+|++|.-
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 56778888777 999999999999999999974
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.05 E-value=0.00016 Score=64.54 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.|++++|.||+||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999997653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00016 Score=64.17 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+++|.|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.00021 Score=67.86 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~ 86 (606)
+|+..+++|+||+|||||+|.|.+... ...|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC-CC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhh-hhccCcc
Confidence 588999999999999999999998654 3456664
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0002 Score=63.73 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=24.5
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++.++.|+|||||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999999765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.90 E-value=0.00022 Score=64.99 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
|.++.|+||||||||||.+.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.89 E-value=0.0041 Score=57.42 Aligned_cols=60 Identities=13% Similarity=-0.020 Sum_probs=39.3
Q ss_pred hCCCEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcc--------hHHhcCCeEEEEc
Q psy10223 177 KDPVLLLLDEPTVNL----DPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRS--------DVLPFLDRTAYLC 236 (606)
Q Consensus 177 ~~p~llllDEPTsgL----D~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~--------~i~~~~D~v~vL~ 236 (606)
.+|++++.|--+.-. +.....+....+.+.+++.+.+++++.|+... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999876532 34444455555556666678999988876542 2344677777664
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.78 E-value=0.00031 Score=62.45 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=24.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|-++.|+|+|||||||+-+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.63 E-value=0.00043 Score=61.63 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=21.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..++|.||+|||||||.+.|+....
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999997654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.57 E-value=0.00055 Score=59.61 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q psy10223 54 EVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g 75 (606)
+++.|.|+||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.00041 Score=61.75 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.57 E-value=0.00055 Score=61.07 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=25.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC--CCCeeEEEECC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS--GTTRGEIILDG 89 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~--~~~~G~I~~~G 89 (606)
.+++|+|++|||||||++-|...+. +..-|.|.-++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 3789999999999999998776532 23335554443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.00024 Score=67.71 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEE
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEII 86 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~ 86 (606)
+|...+++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~-~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG-LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH-hhhcccc
Confidence 578899999999999999999998654 3456665
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.52 E-value=0.00063 Score=60.39 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|-.++|.||+||||||+.+.|+-.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566789999999999999999997654
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.45 E-value=0.0007 Score=59.59 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=22.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++.|.||+||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999997654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00075 Score=63.02 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|.++.|+||||||||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999987654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.42 E-value=0.0008 Score=59.55 Aligned_cols=26 Identities=12% Similarity=0.316 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.41 E-value=0.00067 Score=59.94 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+||+||||||+.+.|+-.+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.0064 Score=58.47 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+..-+++.||||+|||+|.+.|+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 33457899999999999999999754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.33 E-value=0.00078 Score=61.57 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||+|.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 39999999999999999999864
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.29 E-value=0.001 Score=59.32 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++|.|++||||||+.+.|+-.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.001 Score=67.63 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=22.6
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
..+.++.+++|+|||||||||+|.+|+
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 334545599999999999999999985
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.001 Score=57.66 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999997653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.19 E-value=0.0011 Score=60.34 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..+++|+||+||||||+.+.|+-.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999854
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0014 Score=59.42 Aligned_cols=28 Identities=14% Similarity=0.330 Sum_probs=25.1
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+=+++|+++.|.||+|||||||+-.++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999999887764
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.00087 Score=60.60 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|-++.|.|+|||||||+-+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.16 E-value=0.0011 Score=62.07 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.13 E-value=0.00093 Score=61.19 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.3
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.+.++.|+|||||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.07 E-value=0.0013 Score=59.34 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++||-|++|||||||.+.|+-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0027 Score=57.10 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.00 E-value=0.0016 Score=59.46 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-.++.|+||+||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999754
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.95 E-value=0.001 Score=60.14 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999875
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.94 E-value=0.0015 Score=58.63 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||+|.|.|..
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.92 E-value=0.0017 Score=57.79 Aligned_cols=23 Identities=17% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.89 E-value=0.0021 Score=58.42 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|=.+.|+||+||||||.-+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35667889999999999999999953
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.85 E-value=0.0018 Score=57.97 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999998643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.84 E-value=0.002 Score=58.52 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.|+||+||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998543
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.82 E-value=0.0019 Score=56.01 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999999999999753
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0018 Score=59.18 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.0021 Score=58.59 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999976543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.78 E-value=0.0021 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.|+|++||||||+.|.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.77 E-value=0.002 Score=55.91 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.77 E-value=0.13 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+..+++|.|..|.|||||.+.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999988653
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.74 E-value=0.002 Score=58.49 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+.|+||+||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0027 Score=56.52 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999985
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.67 E-value=0.0017 Score=58.31 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+||+|++|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.66 E-value=0.0017 Score=57.67 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.64 E-value=0.003 Score=56.97 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+||+|++.||||||+|.|.+..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.64 E-value=0.0024 Score=60.69 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
...+.+.||||||||||.+.|++...
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 44688999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.60 E-value=0.0028 Score=57.13 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.4
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
++-+++.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4557999999999999999998753
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.59 E-value=0.0026 Score=55.54 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0031 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=21.0
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
..+.|+||||+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999887544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.57 E-value=0.003 Score=56.94 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.|+||+||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.55 E-value=0.0032 Score=56.39 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0034 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.52 E-value=0.003 Score=56.34 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.|+|++||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.52 E-value=0.003 Score=57.79 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+||||||||||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0078 Score=58.08 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+=+++|.++.|.||+|||||||+=.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 5689999999999999999999765553
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.42 E-value=0.0036 Score=55.82 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.++.|.|++||||||+.+.|+.++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999997653
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.41 E-value=0.0034 Score=55.68 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+.++|++||||||+-+.|+..+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45779999999999999997653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.40 E-value=0.0037 Score=56.99 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++++|.||||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.0036 Score=57.77 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++||-|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.38 E-value=0.0036 Score=56.28 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.|+||+||||||+-+.|+..+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0033 Score=56.42 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+.|+||+||||||..+.|+-.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.35 E-value=0.0037 Score=56.28 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.|+||+||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.004 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|.||+||||||+-+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999999654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.002 Score=57.48 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|++++|||||+|.|.+..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.31 E-value=0.0038 Score=56.99 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999643
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.29 E-value=0.0037 Score=55.08 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999998753
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.20 E-value=0.0047 Score=57.36 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.3
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+=+++|+++.|.||+|||||||.-.++
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999987765
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.17 E-value=0.0047 Score=57.10 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|-||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46888999999999999999654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.09 E-value=0.0047 Score=54.73 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|.+|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999998853
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.06 E-value=0.059 Score=49.88 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=15.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.-.+++++||+|+||||.+-=|+.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999876656643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.06 E-value=0.0047 Score=59.35 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999974
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.05 E-value=0.0018 Score=56.74 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|++|+|||||+|.|+|..
T Consensus 3 I~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999853
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.005 Score=56.46 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0058 Score=60.93 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
...-.++|.||||||||||++.|...
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.81 E-value=0.0074 Score=56.04 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=29.2
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCC-CCeeEEEECCEe
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSG-TTRGEIILDGTP 91 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~-~~~G~I~~~G~~ 91 (606)
++|-++.+.|.||||||||.+.|.-.+.. ...-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchH
Confidence 57889999999999999999999754310 011245666644
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.78 E-value=0.0064 Score=55.02 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.74 E-value=0.0053 Score=61.10 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.|.-++|.|+.||||||||++|.+..+
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEeeccccchHHHHHHhhhcc
Confidence 344589999999999999999998876
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.73 E-value=0.0087 Score=55.98 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.4
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 348999999999999999999976544
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.71 E-value=0.0087 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=24.6
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+=+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999876653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.64 E-value=0.0074 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+.|.||+|+||||+.++|+...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.64 E-value=0.0072 Score=53.21 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++++|++|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999988764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.0088 Score=56.27 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+.+.||||+||||+.++|+....
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999998654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.53 E-value=0.008 Score=56.23 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+.+.||||+||||+.++|+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 378999999999999999997654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.48 E-value=0.0079 Score=56.35 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+.+.||+|+||||+.+++++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.47 E-value=0.007 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.=+++|-|+.||||||+++.|+..+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999987653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.47 E-value=0.0088 Score=59.48 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
..-.++|.||+|||||||+..|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 4667999999999999999998753
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.25 E-value=0.02 Score=55.27 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+=++.|.++-|-||+|||||||.-.++..
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHH
Confidence 56899999999999999999998777653
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.22 E-value=0.0086 Score=53.08 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.20 E-value=0.011 Score=55.52 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+..++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.012 Score=54.79 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+=+++|+++.|.||||||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999999877763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.17 E-value=0.011 Score=55.43 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+++|+|+++||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.15 E-value=0.011 Score=52.39 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++++|++|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.011 Score=52.35 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.09 E-value=0.013 Score=53.88 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.05 E-value=0.013 Score=54.32 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=23.8
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|-+++|-|+.||||||+.+.|+..+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999987654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.05 E-value=0.011 Score=60.48 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++|+|++|+|||||+|.|.|...
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999643
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.04 E-value=0.011 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+++.||+|+|||+|.+.|++..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.0094 Score=55.46 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.00 E-value=0.011 Score=58.28 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
|+.-+++.||||+|||.|.|+|+....
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 334566899999999999999997643
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.012 Score=54.60 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.+-||+|+||||+.++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.011 Score=51.95 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.88 E-value=0.015 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
..+.|.||+|+||||+++.|+..+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999997654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.88 E-value=0.013 Score=51.46 Aligned_cols=20 Identities=20% Similarity=0.536 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997774
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.013 Score=52.09 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.73 E-value=0.015 Score=53.39 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
++||.|+.||||||+.+.+.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.018 Score=51.05 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.017 Score=51.75 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.015 Score=51.15 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.46 E-value=0.017 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.582 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.019 Score=52.81 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
++||.|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.44 E-value=0.016 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++.||+|+|||+|.+.|++..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.02 Score=50.48 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+-
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.017 Score=50.83 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.35 E-value=0.018 Score=51.51 Aligned_cols=21 Identities=29% Similarity=0.621 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.017 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988853
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.27 E-value=0.018 Score=50.91 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.24 E-value=0.023 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++.+++++||+|+||||.+-=|+.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999876656644
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.022 Score=50.22 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.17 E-value=0.02 Score=52.94 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.+-||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999998643
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.15 E-value=0.02 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++||-|++||||||+.+.|..++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHH
Confidence 89999999999999999988654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.021 Score=50.19 Aligned_cols=21 Identities=43% Similarity=0.520 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.021 Score=50.15 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.09 E-value=0.021 Score=49.83 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|.+|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998874
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.021 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.0
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.05 E-value=0.02 Score=54.66 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++.||+|+|||+|.+.+++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999998653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.02 E-value=0.013 Score=52.29 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 66999999999999998754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.99 E-value=0.029 Score=49.69 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.8
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+||.++++-|+=|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 4689999999999999999999988543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.022 Score=52.56 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+.+.||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999998653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.99 E-value=0.02 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.98 E-value=0.02 Score=51.84 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 889999999999999987753
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.87 E-value=0.016 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.022 Score=50.38 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998774
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.028 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.75 E-value=0.021 Score=54.79 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++..-+.|.||+|+|||+|.+.|++...
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33445588999999999999999998763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.74 E-value=0.066 Score=48.16 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=26.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
.|+..-..+ .|.=++|.|+||+|||||.-.+..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 455555555 788899999999999999877653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.70 E-value=0.026 Score=49.55 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+-
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.68 E-value=0.023 Score=53.06 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=28.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q psy10223 177 KDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPR 222 (606)
Q Consensus 177 ~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~ 222 (606)
.+.+++++||.-. |.......+.+.+.+.. .+..+|++++++.
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~--~~~~~Il~tn~~~ 172 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS--KNIRLIMVCDSMS 172 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHST--TTEEEEEEESCSC
T ss_pred CCceEEEeccccc-cccccchhhhccccccc--ccccceeeecccc
Confidence 3567999999854 77777777777765532 2445677777654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.64 E-value=0.017 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++.+.+.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 669999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.59 E-value=0.03 Score=51.79 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+|.+++|=|+-||||||+.+.|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999987664
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.03 Score=49.16 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.027 Score=49.95 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999988754
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.40 E-value=0.017 Score=56.30 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=17.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++||-|+|||||||+.+.|....
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999987654
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.38 E-value=0.038 Score=51.09 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
...+++++||+|+||||.+-=|+.+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999998877777543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.34 E-value=0.034 Score=50.40 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.02 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=8.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977753
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.24 E-value=0.03 Score=49.58 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=18.2
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|.+|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.22 E-value=0.032 Score=49.03 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999977653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.21 E-value=0.04 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+||+|...+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.034 Score=48.92 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.034 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988743
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.97 E-value=0.019 Score=56.65 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.6
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.-+.|.||+|+|||||+|.++++++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCC
Confidence 4579999999999999999999876
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.036 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.036 Score=49.46 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999987753
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.023 Score=50.21 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=17.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.91 E-value=0.04 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++||-|++|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.75 E-value=0.039 Score=48.57 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q psy10223 55 VLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g 75 (606)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.044 Score=52.97 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
-+++|+||-++|||||||.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4899999999999999999998653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.61 E-value=0.042 Score=48.41 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.59 E-value=0.078 Score=47.63 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.3
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
.|+..-. .-.|.=+++.|+||+|||||.-.+..+
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4554434 446888999999999999998776643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.53 E-value=0.04 Score=53.90 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q psy10223 56 LAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
+||+|.|.+|||||+|.|+|-.
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999853
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.51 E-value=0.053 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=19.5
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+-.+++++||+|+||||.+-=|+.+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4458899999999999876656643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.39 E-value=0.044 Score=49.01 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=17.4
Q ss_pred EEEEcCCCccHHHHHHHHH
Q psy10223 56 LAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~ 74 (606)
+.|+|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6899999999999999884
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.17 E-value=0.042 Score=53.38 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
+||+|.|.+|||||+++|++-
T Consensus 13 iGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999964
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.05 Score=48.42 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+-
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999977653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.04 E-value=0.045 Score=56.47 Aligned_cols=44 Identities=20% Similarity=0.470 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECCEeCCcccccCeEEEEcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDGTPMSPQLFQTTCGYVNHR 107 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G~~~~~~~~~~~i~yv~q~ 107 (606)
=++++||+|+|||-|.|.||+.+.-|. +..+....+ .+|||-+|
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VPF---v~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAPF---IKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCE---EEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCE---EEeecceee------ecceeecc
Confidence 488999999999999999999775342 333333222 36777765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.059 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.3
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+++++||+|+||||.+-=|+.+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999998776666543
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.76 E-value=0.056 Score=47.25 Aligned_cols=21 Identities=48% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.75 E-value=0.055 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.8
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q psy10223 55 VLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~ 74 (606)
-++|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.052 Score=48.48 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|.+|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 79999999999999998764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.60 E-value=0.1 Score=46.44 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=25.1
Q ss_pred eEEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 42 ILKDISLEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 42 iL~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
-|+. ++..-.|.=++|.|+||+|||||.-.+..
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 44456788999999999999998866653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.32 E-value=0.072 Score=54.13 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 171 IGTQLVKDPVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 171 Ia~aL~~~p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
+..+|=++|++++..|.. |+.++...+ +.+ ..|..|+.|.|-. ++....+|
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa-~tGhlV~tTlHa~--~a~~~~~R 270 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QAS-LTGHLVMSTLHTN--TAVGAVTR 270 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHH-HTTCEEEEEECCS--SSHHHHHH
T ss_pred HHHHHhhcCCEEEecCcC---ChHHHHHHH----HHH-hcCCeEEEEeccC--chHhhhhh
Confidence 445667899999999997 666665544 334 3688999999854 34444444
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.32 E-value=0.063 Score=52.03 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|.-.||||||+|.|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.26 E-value=0.06 Score=48.30 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=18.3
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|.+|+|||||++.+.+-
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877643
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.15 E-value=0.069 Score=51.78 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=25.5
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+-+-+|+-.+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4578999999999999999999998885
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.98 E-value=0.07 Score=47.43 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=17.5
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.083 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
|.-.++++||+|+|||.|.+.||-.+
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHhhc
Confidence 44468899999999999999999754
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=89.88 E-value=0.066 Score=53.71 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=25.9
Q ss_pred EeCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 50 VRPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 50 v~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
++++..+++.||+|+||||+.+.|++...
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36778999999999999999999998765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.68 E-value=0.076 Score=48.66 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++|+|..+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999863
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.62 E-value=0.075 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+||+|-|.+|||||+++|++..
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.53 E-value=0.094 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred eEEEEEcCCCccHHHHHHHHHc
Q psy10223 54 EVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g 75 (606)
.++||.|+.||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999964
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.37 E-value=0.11 Score=48.03 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
++.|-|.-||||||||+-+....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEeeCCCCCHHHHHHHHHhcC
Confidence 68899999999999999887643
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.24 E-value=0.08 Score=50.98 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.++|+|.-.||||||+|.|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.94 E-value=0.12 Score=47.06 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 52 PGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
|.=-++|+|.-.+|||||++.|.|...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333489999999999999999998653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=88.66 E-value=0.11 Score=51.09 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=25.6
Q ss_pred EEeeEEEEeCCeEEEEEcCCCccHHHHHHHHHcCC
Q psy10223 43 LKDISLEVRPGEVLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 43 L~~vs~~v~~Ge~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
.+-+-...++| ++++.||||+|||.|.+.|++..
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 33333455555 67778999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.96 E-value=0.12 Score=45.82 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
+.|+|..|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 68999999999999998864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.51 E-value=0.14 Score=47.16 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=21.7
Q ss_pred eEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 54 EVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
.+++|=|+-||||||+++.|+-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3688999999999999999987553
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.30 E-value=0.14 Score=45.10 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.9
Q ss_pred EEEEcCCCccHHHHHHHHHc
Q psy10223 56 LAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g 75 (606)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 68999999999999998754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.76 E-value=0.14 Score=48.87 Aligned_cols=19 Identities=42% Similarity=0.700 Sum_probs=17.7
Q ss_pred EEEEcCCCccHHHHHHHHH
Q psy10223 56 LAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~ 74 (606)
++|+|+.|+|||||...|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 6899999999999999884
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=86.76 E-value=0.12 Score=49.12 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=13.3
Q ss_pred EEEEEcCCCccHHHHH
Q psy10223 55 VLAVLGSKGSGKRALL 70 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLL 70 (606)
-+.|+|++||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4689999999999754
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.67 E-value=0.16 Score=46.65 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=36.6
Q ss_pred hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchH
Q psy10223 176 VKDPVLLLLDEPTVN-LDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDV 225 (606)
Q Consensus 176 ~~~p~llllDEPTsg-LD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i 225 (606)
..+.+++++|+-=.= =+......+..++....+ .|+.+|+|+..+..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcchhc
Confidence 557899999987432 246778889999988765 5788888888776554
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.17 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 48889999999999999998754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=86.26 E-value=0.13 Score=49.61 Aligned_cols=16 Identities=38% Similarity=0.646 Sum_probs=13.5
Q ss_pred EEEEEcCCCccHHHHH
Q psy10223 55 VLAVLGSKGSGKRALL 70 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLL 70 (606)
.+.|.|++||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4779999999999755
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.03 E-value=0.19 Score=48.02 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.3
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHH
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~ 74 (606)
+=++.|.++.|.||+|+|||||+-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHH
Confidence 468999999999999999999964444
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.85 E-value=0.17 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.8
Q ss_pred eEEEEEcCCCccHHHHHHHHH
Q psy10223 54 EVLAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 54 e~~~IlG~nGsGKSTLLk~L~ 74 (606)
..++|+|++|||||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 358999999999999997554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.54 E-value=0.18 Score=48.34 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=17.6
Q ss_pred EEEEcCCCccHHHHHHHHH
Q psy10223 56 LAVLGSKGSGKRALLEVIS 74 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~ 74 (606)
++|+|+.|||||||...|.
T Consensus 9 i~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6999999999999999884
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.38 E-value=0.2 Score=46.47 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=31.2
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcchHHhcCCe
Q psy10223 179 PVLLLLDEPTVNLDPLSTYLIVSMLSSYAKRKSRAVLLTMEKPRSDVLPFLDR 231 (606)
Q Consensus 179 p~llllDEPTsgLD~~~~~~i~~~L~~l~~~~g~tii~t~h~~~~~i~~~~D~ 231 (606)
.+++++||.= .|+...+..+.+.|.+.. .+..+|++++++..-+..+-.|
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~--~~~~~il~tn~~~~i~~~i~SR 165 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP--EHVKFLLATTDPQKLPVTILSR 165 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC--TTEEEEEEESCGGGSCHHHHTT
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC--CCeEEEEEcCCccccChhHhhh
Confidence 4699999985 477777777766665432 3456777776654333333333
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.58 E-value=0.29 Score=46.86 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.7
Q ss_pred EEEeCCeEEEEEcCCCccHHHHHHHHHc
Q psy10223 48 LEVRPGEVLAVLGSKGSGKRALLEVISR 75 (606)
Q Consensus 48 ~~v~~Ge~~~IlG~nGsGKSTLLk~L~g 75 (606)
+.+-+|+..+|.|++|+|||||+.-|+.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 5678999999999999999999877763
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.47 E-value=0.24 Score=47.31 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-..|+||+|.|||++..-++.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998764
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.10 E-value=0.27 Score=44.68 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q psy10223 55 VLAVLGSKGSGKRALLEVISRRS 77 (606)
Q Consensus 55 ~~~IlG~nGsGKSTLLk~L~g~~ 77 (606)
-..|+||+|.|||++..-|+.+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36899999999999999998754
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.03 E-value=0.39 Score=45.57 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 53 GEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 53 Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+-.++|+|.|-+|||||+|.|.|...
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 44589999999999999999999754
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.85 E-value=0.3 Score=47.62 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=27.0
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCCCCCeeEEEECC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSSGTTRGEIILDG 89 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~~~~~G~I~~~G 89 (606)
+|.-.++++||+|+|||.|.+.|+-.+.+....-+.+|.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence 344467899999999999999999765322223444543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.27 E-value=0.34 Score=43.81 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q psy10223 56 LAVLGSKGSGKRALLEVISRR 76 (606)
Q Consensus 56 ~~IlG~nGsGKSTLLk~L~g~ 76 (606)
++|+|..++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999998753
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=81.71 E-value=0.36 Score=47.93 Aligned_cols=21 Identities=19% Similarity=0.400 Sum_probs=17.8
Q ss_pred CCeEEEEEcCCCccHHHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALLEV 72 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLLk~ 72 (606)
.+.++.|.||+|+||||++..
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHH
Confidence 366999999999999998743
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.51 E-value=0.35 Score=46.99 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.7
Q ss_pred eCCeEEEEEcCCCccHHHHH
Q psy10223 51 RPGEVLAVLGSKGSGKRALL 70 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLL 70 (606)
+.|++.++.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999964
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.31 E-value=0.41 Score=47.64 Aligned_cols=27 Identities=19% Similarity=0.493 Sum_probs=21.9
Q ss_pred eCCeEEEEEcCCCccHHHHHHHHHcCCC
Q psy10223 51 RPGEVLAVLGSKGSGKRALLEVISRRSS 78 (606)
Q Consensus 51 ~~Ge~~~IlG~nGsGKSTLLk~L~g~~~ 78 (606)
+++- ++.+||+|+|||-|.|.||....
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence 4453 66789999999999999997654
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=80.20 E-value=0.34 Score=47.23 Aligned_cols=19 Identities=37% Similarity=0.667 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCCccHHHHH
Q psy10223 52 PGEVLAVLGSKGSGKRALL 70 (606)
Q Consensus 52 ~Ge~~~IlG~nGsGKSTLL 70 (606)
.|++.++.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5889999999999999963
|