Psyllid ID: psy10234

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVAS
ccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccc
cccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHcHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccc
MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHscglvkgeEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVAS
msdniatetmnmkLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTlneievdireNRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRrgnaaccrlllpvas
MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVAS
*********MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLP***
*****************CFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVA*
MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVAS
*****************CFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYSELSIELKTELEDIHMNIESELIKRIESRVMSRMRRGNAACCRLLLPVAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query167 2.2.26 [Sep-21-2011]
Q21EF4 469 Argininosuccinate lyase O yes N/A 0.844 0.300 0.420 2e-22
Q6AR60 464 Argininosuccinate lyase O yes N/A 0.598 0.215 0.53 3e-22
Q2SQ67 468 Argininosuccinate lyase O yes N/A 0.562 0.200 0.510 2e-21
Q6FFB2 477 Argininosuccinate lyase O yes N/A 0.598 0.209 0.46 3e-21
Q2RG68 464 Argininosuccinate lyase O yes N/A 0.568 0.204 0.515 3e-21
Q88B94 464 Argininosuccinate lyase O yes N/A 0.604 0.217 0.450 4e-21
Q48QD3 464 Argininosuccinate lyase O yes N/A 0.604 0.217 0.450 5e-21
Q500N3 464 Argininosuccinate lyase O yes N/A 0.604 0.217 0.441 5e-21
B0VMC7 477 Argininosuccinate lyase O yes N/A 0.616 0.215 0.446 8e-21
B2I1W9 477 Argininosuccinate lyase O yes N/A 0.616 0.215 0.446 8e-21
>sp|Q21EF4|ARLY_SACD2 Argininosuccinate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=argH PE=3 SV=1 Back     alignment and function desciption
 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 4/145 (2%)

Query: 12  MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIK 71
           +K W G F E  + FVE+FT S+T D+RLY  DI GSIAH TML S G++  +EK  II 
Sbjct: 10  VKPWGGRFSEPTDAFVERFTASVTFDQRLYHHDINGSIAHATMLASVGVLSEDEKTAIID 69

Query: 72  TLNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQYYFLLLQYS---ELSIELKTEL 128
            L  I  DI E + +    LED+HMNIE+EL KRI      L    S   +++ +++  L
Sbjct: 70  GLEAIRSDIVEGKFDWSISLEDVHMNIEAELTKRIGITGKKLHTGRSRNDQVATDIRLYL 129

Query: 129 EDIHMNIESELIKRIESRVMSRMRR 153
            D   NI  EL  R++S ++    R
Sbjct: 130 RDEIDNIAKELT-RLQSGILDLAER 153

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) (taxid: 203122)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 1
>sp|Q6AR60|ARLY_DESPS Argininosuccinate lyase OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q2SQ67|ARLY_HAHCH Argininosuccinate lyase OS=Hahella chejuensis (strain KCTC 2396) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q6FFB2|ARLY_ACIAD Argininosuccinate lyase OS=Acinetobacter sp. (strain ADP1) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q2RG68|ARLY_MOOTA Argininosuccinate lyase OS=Moorella thermoacetica (strain ATCC 39073) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q88B94|ARLY_PSESM Argininosuccinate lyase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q48QD3|ARLY_PSE14 Argininosuccinate lyase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|Q500N3|ARLY_PSEU2 Argininosuccinate lyase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B0VMC7|ARLY_ACIBS Argininosuccinate lyase OS=Acinetobacter baumannii (strain SDF) GN=argH PE=3 SV=1 Back     alignment and function description
>sp|B2I1W9|ARLY_ACIBC Argininosuccinate lyase OS=Acinetobacter baumannii (strain ACICU) GN=argH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
88797658 464 Argininosuccinate lyase [Reinekea blande 0.550 0.198 0.5 2e-21
90023310 469 argininosuccinate lyase [Saccharophagus 0.844 0.300 0.420 9e-21
51244287 464 argininosuccinate lyase [Desulfotalea ps 0.598 0.215 0.53 2e-20
421856849 477 argininosuccinate lyase [Acinetobacter r 0.628 0.220 0.447 2e-20
421464557 477 argininosuccinate lyase [Acinetobacter r 0.628 0.220 0.447 2e-20
255320963 477 argininosuccinate lyase [Acinetobacter r 0.628 0.220 0.447 2e-20
121534680 471 argininosuccinate lyase [Thermosinus car 0.562 0.199 0.531 2e-20
338811079 467 argininosuccinate lyase [Acetonema longu 0.562 0.201 0.510 3e-20
262370153 477 argininosuccinate lyase [Acinetobacter j 0.556 0.194 0.483 6e-20
291541926 458 argininosuccinate lyase [Ruminococcus br 0.568 0.207 0.536 6e-20
>gi|88797658|ref|ZP_01113247.1| Argininosuccinate lyase [Reinekea blandensis MED297] gi|88779830|gb|EAR11016.1| Argininosuccinate lyase [Reinekea sp. MED297] Back     alignment and taxonomy information
 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 64/92 (69%)

Query: 15  WKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLN 74
           W G F E  + FV +FT SI  D+RLY++DIEGSIAH TML  CG++  EEK+ I++ LN
Sbjct: 8   WGGRFSEATDAFVAEFTASIGFDQRLYRQDIEGSIAHATMLAECGVLTDEEKNAIVQGLN 67

Query: 75  EIEVDIRENRIELKTELEDIHMNIESELIKRI 106
           E++ DI + R +    LED+HMN+E+ L  +I
Sbjct: 68  EVKDDIEQGRQQWSVALEDVHMNVEAALTAKI 99

Source: Reinekea blandensis MED297

Species: Reinekea blandensis

Genus: Reinekea

Family:

Order:

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|90023310|ref|YP_529137.1| argininosuccinate lyase [Saccharophagus degradans 2-40] gi|109940282|sp|Q21EF4.1|ARLY_SACD2 RecName: Full=Argininosuccinate lyase; Short=ASAL; AltName: Full=Arginosuccinase gi|89952910|gb|ABD82925.1| argininosuccinate lyase [Saccharophagus degradans 2-40] Back     alignment and taxonomy information
>gi|51244287|ref|YP_064171.1| argininosuccinate lyase [Desulfotalea psychrophila LSv54] gi|61211471|sp|Q6AR60.1|ARLY_DESPS RecName: Full=Argininosuccinate lyase; Short=ASAL; AltName: Full=Arginosuccinase gi|50875324|emb|CAG35164.1| probable argininosuccinate lyase [Desulfotalea psychrophila LSv54] Back     alignment and taxonomy information
>gi|421856849|ref|ZP_16289208.1| argininosuccinate lyase [Acinetobacter radioresistens DSM 6976 = NBRC 102413] gi|403187751|dbj|GAB75409.1| argininosuccinate lyase [Acinetobacter radioresistens DSM 6976 = NBRC 102413] Back     alignment and taxonomy information
>gi|421464557|ref|ZP_15913247.1| argininosuccinate lyase [Acinetobacter radioresistens WC-A-157] gi|400205310|gb|EJO36291.1| argininosuccinate lyase [Acinetobacter radioresistens WC-A-157] Back     alignment and taxonomy information
>gi|255320963|ref|ZP_05362136.1| argininosuccinate lyase [Acinetobacter radioresistens SK82] gi|262379946|ref|ZP_06073101.1| argininosuccinate lyase [Acinetobacter radioresistens SH164] gi|255301927|gb|EET81171.1| argininosuccinate lyase [Acinetobacter radioresistens SK82] gi|262298140|gb|EEY86054.1| argininosuccinate lyase [Acinetobacter radioresistens SH164] Back     alignment and taxonomy information
>gi|121534680|ref|ZP_01666501.1| argininosuccinate lyase [Thermosinus carboxydivorans Nor1] gi|121306700|gb|EAX47621.1| argininosuccinate lyase [Thermosinus carboxydivorans Nor1] Back     alignment and taxonomy information
>gi|338811079|ref|ZP_08623315.1| argininosuccinate lyase [Acetonema longum DSM 6540] gi|337276902|gb|EGO65303.1| argininosuccinate lyase [Acetonema longum DSM 6540] Back     alignment and taxonomy information
>gi|262370153|ref|ZP_06063480.1| argininosuccinate lyase [Acinetobacter johnsonii SH046] gi|262315192|gb|EEY96232.1| argininosuccinate lyase [Acinetobacter johnsonii SH046] Back     alignment and taxonomy information
>gi|291541926|emb|CBL15036.1| argininosuccinate lyase [Ruminococcus bromii L2-63] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query167
TAIR|locus:2183825 517 AT5G10920 [Arabidopsis thalian 0.610 0.197 0.470 2.6e-19
TIGR_CMR|CHY_2259 456 CHY_2259 "argininosuccinate ly 0.568 0.208 0.494 2.2e-18
TIGR_CMR|CJE_1009 460 CJE_1009 "argininosuccinate ly 0.856 0.310 0.331 2.2e-17
TIGR_CMR|GSU_0156 458 GSU_0156 "argininosuccinate ly 0.562 0.205 0.457 2.7e-16
TIGR_CMR|BA_4879 462 BA_4879 "argininosuccinate lya 0.562 0.203 0.436 9.5e-15
TIGR_CMR|ECH_0937 470 ECH_0937 "argininosuccinate ly 0.580 0.206 0.422 6.9e-13
TIGR_CMR|SO_0279 455 SO_0279 "argininosuccinate lya 0.568 0.208 0.354 1.3e-11
TIGR_CMR|CPS_0464 645 CPS_0464 "argininosuccinate ly 0.562 0.145 0.336 1.1e-10
TIGR_CMR|SPO_0332 463 SPO_0332 "argininosuccinate ly 0.574 0.207 0.333 1.5e-09
TIGR_CMR|DET_1261 461 DET_1261 "argininosuccinate ly 0.526 0.190 0.363 4.1e-09
TAIR|locus:2183825 AT5G10920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 238 (88.8 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 48/102 (47%), Positives = 71/102 (69%)

Query:     1 MSDNIATETMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGL 60
             MS +  T +  +KLW G F+E++ + VE+FTESI+ D+ LYK+DI GS AH +ML   GL
Sbjct:    47 MSHDDDTASKEVKLWGGRFEESVTEKVEKFTESISFDKVLYKQDIMGSKAHASMLAHQGL 106

Query:    61 VKGEEKDIIIKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
             +   +KD I++ L++IE  I  N+ E +T+ ED+HMNIE+ L
Sbjct:   107 ITDSDKDSILRGLDDIERQIEANKFEWRTDREDVHMNIEAAL 148
GO:0003824 "catalytic activity" evidence=IEA
GO:0004056 "argininosuccinate lyase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0042450 "arginine biosynthetic process via ornithine" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
TIGR_CMR|CHY_2259 CHY_2259 "argininosuccinate lyase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1009 CJE_1009 "argininosuccinate lyase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0156 GSU_0156 "argininosuccinate lyase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4879 BA_4879 "argininosuccinate lyase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0937 ECH_0937 "argininosuccinate lyase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0279 SO_0279 "argininosuccinate lyase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_0464 CPS_0464 "argininosuccinate lyase/amino-acid N-acetyltransferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0332 SPO_0332 "argininosuccinate lyase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1261 DET_1261 "argininosuccinate lyase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6AR60ARLY_DESPS4, ., 3, ., 2, ., 10.530.59880.2155yesN/A
Q2RG68ARLY_MOOTA4, ., 3, ., 2, ., 10.51570.56880.2047yesN/A
A0Q1Z1ARLY_CLONN4, ., 3, ., 2, ., 10.51570.56880.2173yesN/A
Q2SQ67ARLY_HAHCH4, ., 3, ., 2, ., 10.51060.56280.2008yesN/A
P59616ARLY_CLOTE4, ., 3, ., 2, ., 10.51570.56880.2168yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
PRK00855 459 PRK00855, PRK00855, argininosuccinate lyase; Provi 7e-39
COG0165 459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 7e-31
PLN02646 474 PLN02646, PLN02646, argininosuccinate lyase 5e-28
TIGR00838 455 TIGR00838, argH, argininosuccinate lyase 1e-26
cd01359 435 cd01359, Argininosuccinate_lyase, Argininosuccinat 8e-25
PRK04833 455 PRK04833, PRK04833, argininosuccinate lyase; Provi 2e-15
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 2e-11
cd01334 325 cd01334, Lyase_I, Lyase class I family; a group of 3e-11
PRK06389 434 PRK06389, PRK06389, argininosuccinate lyase; Provi 7e-07
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional Back     alignment and domain information 
 Score =  136 bits (346), Expect = 7e-39
 Identities = 47/98 (47%), Positives = 63/98 (64%)

Query: 9   TMNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDI 68
            M+ KLW G F E  ++ VE+FT SI+ D+RL +EDI GSIAH  ML   G++  EE + 
Sbjct: 1   MMSNKLWGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEK 60

Query: 69  IIKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
           I+  L+EI  +I   + E   ELEDIHM IE+ L +RI
Sbjct: 61  ILAGLDEILEEIEAGKFEFSPELEDIHMAIEARLTERI 98

Length = 459
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 167
COG0165 459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
KOG1316|consensus 464 100.0
PRK06389 434 argininosuccinate lyase; Provisional 100.0
PLN02646 474 argininosuccinate lyase 99.97
TIGR00838 455 argH argininosuccinate lyase. This model describes 99.95
PRK00855 459 argininosuccinate lyase; Provisional 99.94
PRK04833 455 argininosuccinate lyase; Provisional 99.93
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 99.93
PRK06705 502 argininosuccinate lyase; Provisional 99.92
PRK02186 887 argininosuccinate lyase; Provisional 99.81
cd01359 435 Argininosuccinate_lyase Argininosuccinate lyase (a 99.8
PRK14515 479 aspartate ammonia-lyase; Provisional 99.77
PRK00485 464 fumC fumarate hydratase; Reviewed 99.75
PF00206 312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 99.75
cd01334 325 Lyase_I Lyase class I family; a group of proteins 99.72
PRK12425 464 fumarate hydratase; Provisional 99.69
cd01596 450 Aspartase_like aspartase (L-aspartate ammonia-lyas 99.68
PRK12273 472 aspA aspartate ammonia-lyase; Provisional 99.67
cd01357 450 Aspartase Aspartase. This subgroup contains Escher 99.65
cd01595 381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 99.64
PLN00134 458 fumarate hydratase; Provisional 99.64
cd01362 455 Fumarase_classII Class II fumarases. This subgroup 99.6
cd01360 387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 99.58
PRK13353 473 aspartate ammonia-lyase; Provisional 99.55
TIGR02426 338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 99.54
PRK06390 451 adenylosuccinate lyase; Provisional 99.54
PRK08540 449 adenylosuccinate lyase; Reviewed 99.51
cd01597 437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 99.51
TIGR00839 468 aspA aspartate ammonia-lyase. Fumarate hydratase s 99.49
TIGR00928 435 purB adenylosuccinate lyase. This family consists 99.47
TIGR00979 458 fumC_II fumarate hydratase, class II. Putative fum 99.42
PRK08470 442 adenylosuccinate lyase; Provisional 99.36
PRK09285 456 adenylosuccinate lyase; Provisional 99.25
PRK05975 351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 99.16
PRK07492 435 adenylosuccinate lyase; Provisional 98.82
PRK07380 431 adenylosuccinate lyase; Provisional 98.78
cd01598 425 PurB PurB_like adenylosuccinases (adenylsuccinate 98.57
cd03302 436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 98.5
PRK09053 452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 98.31
PLN02848 458 adenylosuccinate lyase 98.31
cd01594 231 Lyase_I_like Lyase class I_like superfamily: conta 97.32
COG0015 438 PurB Adenylosuccinate lyase [Nucleotide transport 96.6
PF1092559 DUF2680: Protein of unknown function (DUF2680); In 80.41
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-40  Score=296.73  Aligned_cols=143  Identities=34%  Similarity=0.469  Sum_probs=136.8

Q ss_pred             hhhhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCC
Q psy10234         10 MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKT   89 (167)
Q Consensus        10 ~~~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~   89 (167)
                      |++++|+|||.+++++.+..|+.|+.||++|++|||.+|+||++||.++|||+++++++|+.+|.+|.+++.+|+|.+++
T Consensus         1 ~~~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~L~~l~~e~~~g~~~~~~   80 (459)
T COG0165           1 MSNKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDP   80 (459)
T ss_pred             CCCCCCCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCCccCCC
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHhhchhhhhhhhhhhhh-------hHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhh
Q psy10234         90 ELEDIHMNIESELIKRIEFQYYFLLLQYSEL-------SIELKTELEDIHM---NIESELIKRIESRVMSRMR  152 (167)
Q Consensus        90 ~~EDiH~~iE~~L~e~iG~~gg~lHtGRSR~-------rl~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~~  152 (167)
                      ++||||++||++|++++|++|||||||||||       |||+|+++.+|..   .|+.+|++.||+|.+|-|-
T Consensus        81 ~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imP  153 (459)
T COG0165          81 DDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMP  153 (459)
T ss_pred             ccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccC
Confidence            9999999999999999999999999999997       5799999977776   8899999999999999873

>KOG1316|consensus Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
2e9f_A 462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 2e-15
1tj7_A 457 Structure Determination And Refinement At 2.44 A Re 4e-10
1aos_A 464 Human Argininosuccinate Lyase Length = 464 3e-09
1k62_A 464 Crystal Structure Of The Human Argininosuccinate Ly 3e-09
1k7w_A 468 Crystal Structure Of S283a Duck Delta 2 Crystallin 7e-08
1tjv_A 474 Crystal Structure Of T161d Duck Delta 2 Crystallin 7e-08
1tju_A 474 Crystal Structure Of T161s Duck Delta 2 Crystallin 7e-08
1hy1_A 468 Crystal Structure Of Wild Type Duck Delta 2 Crystal 7e-08
1auw_A 468 H91n Delta 2 Crystallin From Duck Length = 468 6e-07
1u15_A 472 Crystal Structure Of A Duck-Delta-Crystallin-1 Doub 1e-04
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure 
Iteration: 1

 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 10  MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDII 69
           M  + W G F E  +    +F  S+  DR L++ED+  +  H  MLH+ GL+  EE + I
Sbjct: 1   MAHRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAI 60
Query: 70  IKTLNEIEVDIRENRIELKTELEDIHMNIESEL 102
           +K L+ IE +I       + ELED+HMN+E+ L
Sbjct: 61  LKGLDRIEEEIEAGTFPWREELEDVHMNLEARL 93
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase Length = 464 Back     alignment and structure
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase Q286r Mutant Length = 464 Back     alignment and structure
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant Length = 468 Back     alignment and structure
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant Length = 474 Back     alignment and structure
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin (Eye Lens Protein) Length = 468 Back     alignment and structure
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck Length = 468 Back     alignment and structure
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop Mutant (Dlm) Length = 472 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query167
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 3e-40
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 6e-39
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 1e-38
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Length = 462 Back     alignment and structure
 Score =  139 bits (353), Expect = 3e-40
 Identities = 35/97 (36%), Positives = 55/97 (56%)

Query: 10  MNMKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDII 69
           M  + W G F E  +    +F  S+  DR L++ED+  +  H  MLH+ GL+  EE + I
Sbjct: 1   MAHRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAI 60

Query: 70  IKTLNEIEVDIRENRIELKTELEDIHMNIESELIKRI 106
           +K L+ IE +I       + ELED+HMN+E+ L + +
Sbjct: 61  LKGLDRIEEEIEAGTFPWREELEDVHMNLEARLTELV 97
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Length = 457 Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
1tj7_A 457 Argininosuccinate lyase; crystallin, E. coli, fuma 99.94
2e9f_A 462 Argininosuccinate lyase; alpha helix bundle; HET: 99.93
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 99.92
1fur_A 467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 99.79
1vdk_A 466 Fumarase C, fumarate hydratase class II; TCA cycle 99.76
1yfm_A 488 Fumarase, YFUM; lyase, krebs cycle, active site wa 99.72
1jsw_A 478 L-aspartase, L-aspartate ammonia-lyase; amino acid 99.72
2qga_B 465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 99.71
3bhg_A 459 Adenylosuccinate lyase; structural G PSI-2, protei 99.71
1q5n_A 454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 99.67
3c8t_A 451 Fumarate lyase; structural genomics, PSI-2, protei 99.64
4adm_A 495 Fumarase C, fumarate hydratase class II; lyase, tr 99.63
2ptr_A 462 Adenylosuccinate lyase; mutant-substrate complex; 99.61
1c3c_A 429 Protein (adenylosuccinate lyase); purine biosynthe 99.55
2pfm_A 444 Adenylosuccinate lyase; PURB, purine biosynthesis, 99.53
1dof_A 403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 99.52
1re5_A 450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 99.48
3r6q_A 468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 99.46
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 99.41
2fel_A 359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 99.39
3ocf_A 478 Fumarate lyase:delta crystallin; fumarase, brucell 99.36
4eei_A 438 Adenylosuccinate lyase; structural genomics, niaid 99.35
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 99.3
3e04_A 490 Fumarase, fumarate hydratase; TCA cycle, structura 99.11
3gtd_A 482 Fumarase C, fumarate hydratase class II; structura 99.04
4hgv_A 495 Fumarase C, fumarate hydratase class II; nysgrc, P 98.22
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
Probab=99.94  E-value=3.4e-27  Score=211.22  Aligned_cols=140  Identities=26%  Similarity=0.398  Sum_probs=129.2

Q ss_pred             hhhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccC-CC
Q psy10234         12 MKLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELK-TE   90 (167)
Q Consensus        12 ~kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~-~~   90 (167)
                      |++|+|||++.+++.++.|+.|+.||++|+++||.+++||+.|+.+.|+||++++++|.+++++|..+...+.|+++ +.
T Consensus         1 ~~~~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i~~~~~~~~~~~~~~~   80 (457)
T 1tj7_A            1 MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESD   80 (457)
T ss_dssp             --CCCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHCGGGGGGSC
T ss_pred             CcccccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhhHhcCCcCcCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999888788888887 78


Q ss_pred             CchhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234         91 LEDIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM  151 (167)
Q Consensus        91 ~EDiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~  151 (167)
                      .+|+|+++|.+|++++|+.|+++|+||||||       |++|+.+..+..   .|.+.|.+++++|.+|-|
T Consensus        81 ~~dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~  151 (457)
T 1tj7_A           81 AEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVM  151 (457)
T ss_dssp             CSSHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEE
T ss_pred             CCcHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCee
Confidence            9999999999999999999999999999975       578988877766   778999999999998866
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 167
d1k62b_ 459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 4e-29
d1tj7a_ 455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-27
d1tjva_ 449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 4e-25
d1q5na_ 444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-06
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 4e-29
 Identities = 31/97 (31%), Positives = 50/97 (51%)

Query: 13  KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKT 72
           KLW G F   ++  +E+F  SI  DR L++ D++GS A+   L   GL+   E D I+  
Sbjct: 2   KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHG 61

Query: 73  LNEIEVDIRENRIELKTELEDIHMNIESELIKRIEFQ 109
           L+++  +  +   +L +  EDIH   E  L + I   
Sbjct: 62  LDKVAEEWAQGTFKLNSNDEDIHTANERRLKELIGAT 98
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query167
d1k62b_ 459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tj7a_ 455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1tjva_ 449 Argininosuccinate lyase/delta-crystallin {Domestic 99.96
d1f1oa_ 408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 99.45
d1re5a_ 448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 99.33
d1q5na_ 444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 99.31
d1j3ua_ 462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 99.29
d1fuoa_ 456 Fumarase {Escherichia coli [TaxId: 562]} 99.19
d1c3ca_ 429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 99.07
d1dofa_ 402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 98.88
d1yfma_ 459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 98.84
d1jswa_ 459 L-aspartate ammonia lyase {Escherichia coli [TaxId 98.62
d1vdka_ 460 Fumarase {Thermus thermophilus [TaxId: 274]} 98.43
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Argininosuccinate lyase/delta-crystallin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-34  Score=253.44  Aligned_cols=139  Identities=25%  Similarity=0.352  Sum_probs=133.8

Q ss_pred             hhhcccCCcchhHHHHHHhhCHHHHHHhHHHhhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhcCccccCCCCc
Q psy10234         13 KLWKGCFKENLNKFVEQFTESITVDRRLYKEDIEGSIAHVTMLHSCGLVKGEEKDIIIKTLNEIEVDIRENRIELKTELE   92 (167)
Q Consensus        13 kLW~gR~~~~~~~~~~~f~~s~~~D~~L~~~dI~~s~AHv~mL~~~GIIs~eea~~Il~~L~~i~~~~~~g~~~~~~~~E   92 (167)
                      |||+|||++++++.+++|++|+.||++||+|||.+++||+.||.++||||++++++|+++|++|..++..|+|.+++.+|
T Consensus         2 klW~gr~~~~~~~~~~~f~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~I~~al~~i~~~~~~~~~~~~~~~e   81 (459)
T d1k62b_           2 KLWGGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDKVAEEWAQGTFKLNSNDE   81 (459)
T ss_dssp             CSSCSCCCCSSCHHHHHTTCCHHHHGGGHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHTCCCCCTTCC
T ss_pred             CCCCccCCcchhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             hhHHHHHHHHHHhhchhhhhhhhhhhhhh-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhh
Q psy10234         93 DIHMNIESELIKRIEFQYYFLLLQYSELS-------IELKTELEDIHM---NIESELIKRIESRVMSRM  151 (167)
Q Consensus        93 DiH~~iE~~L~e~iG~~gg~lHtGRSR~r-------l~lRd~l~~i~~---~l~~~l~~~~e~~~~~~~  151 (167)
                      |+|+++|.+|++.+|+.|+++|+||||||       |++|+.+..+..   .+++.|.++|++|.+|-|
T Consensus        82 d~~~~ie~~l~~~~g~~~~~vH~G~S~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m  150 (459)
T d1k62b_          82 DIHTANERRLKELIGATAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLF  150 (459)
T ss_dssp             SHHHHHHHHHHHTTSSGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             chHHHHHHHHHHhhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccee
Confidence            99999999999999999999999999975       689999998887   888999999999999876
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure