Psyllid ID: psy10277

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSKDN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccccccccHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccHHHHHHHHHHHHHcHHHcccccccEHHHHEcccEcHHHHHHHHHccEEEccccccccccEEEcccccEcccccccHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHcccccccccccccccccEcccccccEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHccccEEEEccccccc
Coil and Loop (DISEMBL)
MTTLGVLAGGAGALLYALESSYvqagdlelhpphlkwshsglldsfdhasirRGYEVYKNVCAACHSARFIcyrnlvgvshteAEAKREAEEImvedgpnekgemfkrpgklsdtfpspypneeaaraanngayppdlsyiTMARHGAEDYVFHLLtgymdppagdyVFHLLtgymdppagvqireglyfnpyflGGAIGMAQALYNEIieyedgtpatqsQLAKDVSTFLkwcgepehdtrKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRykfsslktrkisykpsskdn
Flexible Loop (DISEMBL)
MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREaeeimvedgpnekgemfkrpGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKrykfsslktrkisykpsskdn
Low Complexity Region (SEG)
MTTlgvlaggagallyalESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSpypneeaaraanngayppDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTlgvlaggagallyalqavglMTILTAALFYLKRYKFSSLKTRKISYKPSSKDN
Disordered region (IsUnstruct)
***LGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS*******************************************************PDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLK*************
Disordered Region (DISOPRED)
*TTLGVLAGGAGALLYALESSYV*****ELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYN**********ATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKIS*KP*****
Disordered Region (DISEMBL)
MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK**********
Disordered Region (DISPRO)
MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSKDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
P00125	325	Cytochrome c1, heme prote	yes	N/A	0.8	0.750	0.578	8e-87
P08574	325	Cytochrome c1, heme prote	yes	N/A	0.8	0.750	0.567	5e-85
Q9D0M3	325	Cytochrome c1, heme prote	yes	N/A	0.8	0.750	0.575	4e-82
P07143	309	Cytochrome c1, heme prote	yes	N/A	0.868	0.857	0.496	1e-78
Q00988	292	Cytochrome c1, heme prote	yes	N/A	0.862	0.900	0.486	9e-78
P29610	260	Cytochrome c1-2, heme pro	N/A	N/A	0.826	0.969	0.505	6e-74
P25076	320	Cytochrome c1-1, heme pro	N/A	N/A	0.845	0.806	0.486	4e-73
O59680	307	Cytochrome c1, heme prote	yes	N/A	0.862	0.856	0.456	1e-72
P07142	332	Cytochrome c1, heme prote	N/A	N/A	0.819	0.753	0.479	5e-67
Q54D07	275	Cytochrome c1, heme prote	yes	N/A	0.859	0.952	0.438	1e-64

>sp|P00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1 PE=1 SV=2

 Score =  320 bits (820), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 162/280 (57%), Positives = 193/280 (68%), Gaps = 36/280 (12%)

Query: 21  SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
           S V A DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV 
Sbjct: 80  SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139

Query: 81  HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
           +TE EAK  AEE+ V+DGPNE GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSY
Sbjct: 140 YTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199

Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
           I  ARHG EDYVF LL                TGY +PP GV +REGLYFNPYF G AIG
Sbjct: 200 IVRARHGGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIG 243

Query: 201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGA 260
           MA  +YNE++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +          
Sbjct: 244 MAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM-------- 295

Query: 261 GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
                       M +L   ++ +KR+K+S LK+RK++Y+P
Sbjct: 296 ------------MGLLLPLVYAMKRHKWSVLKSRKLAYRP 323

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.
Bos taurus (taxid: 9913)

>sp|P08574|CY1_HUMAN Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1 PE=1 SV=3

 Score =  314 bits (804), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/280 (56%), Positives = 189/280 (67%), Gaps = 36/280 (12%)

Query: 21  SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
           S V A DLELHPP   WSH GLL S DH SIRRG++VYK VCA+CHS  F+ YR+LVGV 
Sbjct: 80  SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVC 139

Query: 81  HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
           +TE EAK  A E+ V+DGPNE GEMF RPGKL D FP PYPN EAARAANNGA PPDLSY
Sbjct: 140 YTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSY 199

Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
           I  ARHG EDYVF LL                TGY +PP GV +REGLYFNPYF G AI 
Sbjct: 200 IVRARHGGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIA 243

Query: 201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGA 260
           MA  +Y +++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +          
Sbjct: 244 MAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMM-------- 295

Query: 261 GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
                       M +L   ++ +KR+K+S LK+RK++Y+P
Sbjct: 296 ------------MALLVPLVYTIKRHKWSVLKSRKLAYRP 323

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Homo sapiens (taxid: 9606)

>sp|Q9D0M3|CY1_MOUSE Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1 PE=1 SV=1

 Score =  305 bits (780), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 161/280 (57%), Positives = 192/280 (68%), Gaps = 36/280 (12%)

Query: 21  SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
           S V A DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV 
Sbjct: 80  SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139

Query: 81  HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
           +TE EAK  AEE+ V+DGPN+ GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSY
Sbjct: 140 YTEEEAKALAEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199

Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
           I  ARHG EDYVF LL                TGY +PP GV +REGLYFNPYF G AIG
Sbjct: 200 IVRARHGGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIG 243

Query: 201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGA 260
           MA  +Y E++EY+DGTPAT SQ+AKDV+TFL+W  EPEHD RKRM +K +          
Sbjct: 244 MAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLM-------- 295

Query: 261 GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
                       M +L    + +KR+K+S LK+RK++Y+P
Sbjct: 296 ------------MGLLLPLTYAMKRHKWSVLKSRKLAYRP 323

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Mus musculus (taxid: 10090)

>sp|P07143|CY1_YEAST Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYT1 PE=1 SV=1

 Score =  293 bits (750), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 151/304 (49%), Positives = 193/304 (63%), Gaps = 39/304 (12%)

Query: 1   MTTLGVLAGG--AGALLYA--LESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYE 56
           + T GV A G  A  LLYA  L +  + A +  LH P   WSH+G  ++FDHASIRRGY+
Sbjct: 36  LVTAGVAAAGITASTLLYADSLTAEAMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQ 95

Query: 57  VYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTF 116
           VY+ VCAACHS   + +R LVGVSHT  E +  AEE   +D P+E+G   KRPGKLSD  
Sbjct: 96  VYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYI 155

Query: 117 PSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYM 176
           P PYPNE+AARAAN GA PPDLS I  ARHG  DY+F LLTGY D               
Sbjct: 156 PGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPD--------------- 200

Query: 177 DPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
           +PPAGV +  G  +NPYF GG+I MA+ L+++++EYEDGTPAT SQ+AKDV+TFL WC E
Sbjct: 201 EPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE 260

Query: 237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
           PEHD RKR+ +K +  L  L               L++I      ++K++K++ +KTRK 
Sbjct: 261 PEHDERKRLGLKTVIILSSLY--------------LLSI------WVKKFKWAGIKTRKF 300

Query: 297 SYKP 300
            + P
Sbjct: 301 VFNP 304

Heme-containing component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain that generates an electrochemical potential coupled to ATP synthesis. The complex couples electron transfer from ubiquinol to cytochrome c.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q00988|CY1_KLULA Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=CYT1 PE=3 SV=1

 Score =  290 bits (742), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 146/300 (48%), Positives = 193/300 (64%), Gaps = 37/300 (12%)

Query: 6   VLAGGAGALLYA--LESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCA 63
           V+  GA  +LYA  L +  + A +  LH P   WSH+G L++FDH+SIRRGY+VY+ VCA
Sbjct: 28  VVGIGASTMLYADSLTADAMTAAEHGLHAPGYGWSHNGPLETFDHSSIRRGYQVYREVCA 87

Query: 64  ACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNE 123
           ACHS   + +R +VGVSHT AE +  AEE   +D P+++G   KRPGKL+D  P PYPNE
Sbjct: 88  ACHSLDRVAWRTMVGVSHTNAEVRAMAEEFEYDDEPDDQGNPKKRPGKLADYVPGPYPNE 147

Query: 124 EAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQ 183
           +AARAAN GA PPDLS I  ARHG  DY+F LLTGY +               +PPAGV 
Sbjct: 148 QAARAANQGALPPDLSLIVKARHGGPDYIFALLTGYPE---------------EPPAGVV 192

Query: 184 IREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRK 243
           +  G  +NPYF GG+I M + L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RK
Sbjct: 193 LPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERK 252

Query: 244 RMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303
           R+ +K M  L        + LY L              ++K++K++S+K+RKI + P  K
Sbjct: 253 RLGLKAMIVL--------SSLYLLS------------VWVKKFKWASIKSRKIVFNPPKK 292

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P29610|CY12_SOLTU Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum tuberosum GN=CYCL PE=1 SV=1

 Score =  277 bits (709), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 146/289 (50%), Positives = 184/289 (63%), Gaps = 37/289 (12%)

Query: 8   AGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS 67
           AG +G L +A  +S  +A +  L  P   W H+G+L S+DHASIRRG++VY+ VCA+CHS
Sbjct: 3   AGVSGLLGFATVASADEA-EHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCHS 61

Query: 68  ARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAAR 127
              + YR+LVGV++TE E K  A EI VEDGPN++GEMF RPGKLSD FP PYPNE AAR
Sbjct: 62  MSLVSYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYPNEAAAR 121

Query: 128 AANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREG 187
            AN GAYPPDLS IT ARH  ++YVF LLT                 Y DPPAGV IREG
Sbjct: 122 FANGGAYPPDLSLITKARHNGQNYVFALLT----------------AYRDPPAGVSIREG 165

Query: 188 LYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAI 247
           L++NPYF GGAI M + L +  +EYEDG PAT++Q+ KDV +FL W  EPE + RK M  
Sbjct: 166 LHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGF 225

Query: 248 KCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
           K +  L                   + +L AA  Y +R ++S LK+RK+
Sbjct: 226 KWIFVLS------------------LALLQAA--YYRRLRWSVLKSRKL 254

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Solanum tuberosum (taxid: 4113)

>sp|P25076|CY11_SOLTU Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum GN=CYCL PE=2 SV=1

 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 143/294 (48%), Positives = 178/294 (60%), Gaps = 36/294 (12%)

Query: 3   TLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVC 62
            L  +  G   LL     +Y    +  L  P+  W H G+L S+DHASIRRG++VY+ VC
Sbjct: 57  ALAAIGAGVSGLLSFATIAYSDEAEHGLECPNYPWPHEGILSSYDHASIRRGHQVYQQVC 116

Query: 63  AACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPN 122
           A+CHS   I YR+LVGV++TE E K  A EI V DGPN++GEMF RPGKLSD FP PY N
Sbjct: 117 ASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYAN 176

Query: 123 EEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGV 182
           E AAR AN GAYPPDLS IT ARH  ++YVF LLT                 Y DPPAGV
Sbjct: 177 EAAARFANGGAYPPDLSLITKARHNGQNYVFALLT----------------AYRDPPAGV 220

Query: 183 QIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
            IREGL++NPYF GGAI M + L +  +EYEDG PAT++Q+ KDV +FL W  EPE + R
Sbjct: 221 SIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEER 280

Query: 243 KRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
           K M  K +  L                   + +L AA  Y +R ++S LK+RK+
Sbjct: 281 KLMGFKWIFVLS------------------LALLQAA--YYRRLRWSVLKSRKL 314

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Solanum tuberosum (taxid: 4113)

>sp|O59680|CY1_SCHPO Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cyt1 PE=3 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 138/302 (45%), Positives = 186/302 (61%), Gaps = 39/302 (12%)

Query: 1   MTTLGVLAGGAGALLYALESSYVQAGDLE---LHPPHLKWSHSGLLDSFDHASIRRGYEV 57
           + +  +L+ G  AL Y +    + AG  +   LH     W  S +L  FDHAS+RRG++V
Sbjct: 38  LVSSSLLSVGMIALYYNVYGPSLSAGTPKEEGLHFIQHDWPQSKVLSGFDHASLRRGFQV 97

Query: 58  YKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFP 117
           Y+ VC+ACHS   I +R+LVGV+HT  EAK+ A E+  EDGP+++G MFKRPGKLSD  P
Sbjct: 98  YREVCSACHSLNLIAWRHLVGVTHTADEAKQMASEVEYEDGPDDEGNMFKRPGKLSDFLP 157

Query: 118 SPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMD 177
            PYPN EAARA+NNGA PPDLS +   RHG +DY++ LLT                GY +
Sbjct: 158 PPYPNVEAARASNNGAAPPDLSCVVRGRHGGQDYIYSLLT----------------GYTE 201

Query: 178 PPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEP 237
           PPAGV++ +G+ FNP+F G  I MA+ L+++ +E+EDGTPAT +Q AKDV  FL W  EP
Sbjct: 202 PPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASEP 261

Query: 238 EHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKIS 297
           E D RK+M  + +T L                    TILTA   + KR+K++ +K RKI 
Sbjct: 262 ELDIRKKMGFQVITVL--------------------TILTALSMWYKRFKWTPIKNRKIF 301

Query: 298 YK 299
           Y+
Sbjct: 302 YQ 303

Heme-containing component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain that generates an electrochemical potential coupled to ATP synthesis. The complex couples electron transfer from ubiquinol to cytochrome c.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P07142|CY1_NEUCR Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyt-1 PE=2 SV=1

 Score =  254 bits (649), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/286 (47%), Positives = 169/286 (59%), Gaps = 36/286 (12%)

Query: 15  LYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYR 74
           LY   S+   A +  LH     W H   L +FDH ++RRG++VY+ VCA+CHS   + YR
Sbjct: 64  LYGFASAMTPAEE-GLHATKYPWVHEQWLKTFDHQALRRGFQVYREVCASCHSLSRVPYR 122

Query: 75  NLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAY 134
            LVG   T  EAK  AEE   +  PN++GE+ KRPGKLSD  P PY N+EAAR ANNGA 
Sbjct: 123 ALVGTILTVDEAKALAEENEYDTEPNDQGEIEKRPGKLSDYLPDPYKNDEAARFANNGAL 182

Query: 135 PPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYF 194
           PPDLS I  ARHG  DY+F LLTGY D               +PPAG  +  GL FNPYF
Sbjct: 183 PPDLSLIVKARHGGCDYIFSLLTGYPD---------------EPPAGASVGAGLNFNPYF 227

Query: 195 LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLG 254
            G  I MA+ LY+ +++YEDGTPA+ SQ+AKDV  FL W  EPE D RKRM +K +    
Sbjct: 228 PGTGIAMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTS 287

Query: 255 VLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
           V        L+AL              Y+KRYK++ LK+RKI Y P
Sbjct: 288 V--------LFALSV------------YVKRYKWAWLKSRKIVYDP 313

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q54D07|CY1_DICDI Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium discoideum GN=cyc1 PE=3 SV=1

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 131/299 (43%), Positives = 175/299 (58%), Gaps = 37/299 (12%)

Query: 1   MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKN 60
           ++ L +++G  G       S+ + + D  + P    W H     S+DHA+IRRG++VY  
Sbjct: 13  LSKLAIVSGVVGTATAITTSTTLLSDDF-VQPTSYPWEHRFPWQSYDHAAIRRGHQVYTQ 71

Query: 61  VCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPY 120
           VC+ CHS   I YR+L  V++T  E K  A +  V DGP+ +G+MF+R G+++D  P PY
Sbjct: 72  VCSTCHSLNLISYRHLANVAYTPEELKAMAADTTVMDGPDSEGDMFERKGQVTDFHPKPY 131

Query: 121 PNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPA 180
           PN  AAR ANNGA PPDLS +  AR   EDYVF LLT                GY +PPA
Sbjct: 132 PNSNAARFANNGALPPDLSLVIKARGAHEDYVFSLLT----------------GYCEPPA 175

Query: 181 GVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHD 240
           GV++  G YFNPYF G  I MA  L + ++EY+DGT  + SQ+AKDVSTFL W  EPEHD
Sbjct: 176 GVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVSTFLCWASEPEHD 235

Query: 241 TRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYK 299
            RK++ +K +  LGV                  +I+   LFY KR K+S +KTRKIS+K
Sbjct: 236 DRKKLGMKVL--LGV------------------SIIALPLFYWKRLKWSVIKTRKISFK 274

This is the heme-containing component of the cytochrome b-c1 complex, which accepts electrons from Rieske protein and transfers electrons to cytochrome c in the mitochondrial respiratory chain.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
158286587	306	AGAP006936-PA [Anopheles gambiae str. PE	0.868	0.866	0.652	4e-99
158286589	297	AGAP006936-PB [Anopheles gambiae str. PE	0.868	0.892	0.652	5e-99
289741561	307	cytochrome C1 [Glossina morsitans morsit	0.855	0.850	0.624	1e-98
195127393	307	GI13337 [Drosophila mojavensis] gi|19391	0.862	0.856	0.603	3e-98
195014170	307	GH16186 [Drosophila grimshawi] gi|193897	0.862	0.856	0.616	2e-97
189235816	305	PREDICTED: similar to AGAP006936-PA [Tri	0.816	0.816	0.639	2e-96
270004913	306	mitochondrial cytochrome c1 [Tribolium c	0.816	0.813	0.639	3e-96
327288789	279	PREDICTED: cytochrome c1, heme protein,	0.862	0.942	0.596	1e-95
348521806	307	PREDICTED: cytochrome c1, heme protein,	0.862	0.856	0.593	1e-95
229606083	306	cytochrome c1, heme protein, mitochondri	0.859	0.856	0.591	2e-95

>gi|158286587|ref|XP_308821.4| AGAP006936-PA [Anopheles gambiae str. PEST] gi|157020539|gb|EAA04119.4| AGAP006936-PA [Anopheles gambiae str. PEST]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 197/302 (65%), Positives = 216/302 (71%), Gaps = 37/302 (12%)

Query: 2   TTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNV 61
           T  GVL GGAGALLYALE S V A   E+HPP L W+H G+LDS DHAS+RRGYEVYK V
Sbjct: 42  TAAGVLVGGAGALLYALEQS-VSASGTEVHPPELPWNHKGMLDSLDHASVRRGYEVYKQV 100

Query: 62  CAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYP 121
           CAACHS RFI YRNLVGVSHTEAEAK EAEEI V DGP+E G  F RPGKLSD FPSPYP
Sbjct: 101 CAACHSMRFIAYRNLVGVSHTEAEAKAEAEEIQVRDGPDEAGNYFMRPGKLSDYFPSPYP 160

Query: 122 NEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAG 181
           NEEAARAANNGAYPPDLSYI +ARHG EDY+F LL                TGY D PAG
Sbjct: 161 NEEAARAANNGAYPPDLSYIALARHGGEDYLFALL----------------TGYCDAPAG 204

Query: 182 VQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDT 241
           V +REG Y+NPYF GGAI MAQALYNE  EY DGTP T SQLAKDVSTFL W  EP HD 
Sbjct: 205 VVLREGQYYNPYFPGGAISMAQALYNEAAEYSDGTPPTASQLAKDVSTFLVWAAEPYHDE 264

Query: 242 RKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPS 301
           RKRM IK                    +VG++ IL A  +Y+KR+K+++LKTRKIS+ P 
Sbjct: 265 RKRMGIK--------------------SVGIIMILGALSYYIKRHKWAALKTRKISFHPK 304

Query: 302 SK 303
           SK
Sbjct: 305 SK 306

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158286589|ref|XP_001688099.1| AGAP006936-PB [Anopheles gambiae str. PEST] gi|157020540|gb|EDO64748.1| AGAP006936-PB [Anopheles gambiae str. PEST]

 Score =  367 bits (941), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 197/302 (65%), Positives = 216/302 (71%), Gaps = 37/302 (12%)

Query: 2   TTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNV 61
           T  GVL GGAGALLYALE S V A   E+HPP L W+H G+LDS DHAS+RRGYEVYK V
Sbjct: 33  TAAGVLVGGAGALLYALEQS-VSASGTEVHPPELPWNHKGMLDSLDHASVRRGYEVYKQV 91

Query: 62  CAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYP 121
           CAACHS RFI YRNLVGVSHTEAEAK EAEEI V DGP+E G  F RPGKLSD FPSPYP
Sbjct: 92  CAACHSMRFIAYRNLVGVSHTEAEAKAEAEEIQVRDGPDEAGNYFMRPGKLSDYFPSPYP 151

Query: 122 NEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAG 181
           NEEAARAANNGAYPPDLSYI +ARHG EDY+F LL                TGY D PAG
Sbjct: 152 NEEAARAANNGAYPPDLSYIALARHGGEDYLFALL----------------TGYCDAPAG 195

Query: 182 VQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDT 241
           V +REG Y+NPYF GGAI MAQALYNE  EY DGTP T SQLAKDVSTFL W  EP HD 
Sbjct: 196 VVLREGQYYNPYFPGGAISMAQALYNEAAEYSDGTPPTASQLAKDVSTFLVWAAEPYHDE 255

Query: 242 RKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPS 301
           RKRM IK                    +VG++ IL A  +Y+KR+K+++LKTRKIS+ P 
Sbjct: 256 RKRMGIK--------------------SVGIIMILGALSYYIKRHKWAALKTRKISFHPK 295

Query: 302 SK 303
           SK
Sbjct: 296 SK 297

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741561|gb|ADD19528.1| cytochrome C1 [Glossina morsitans morsitans]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 186/298 (62%), Positives = 214/298 (71%), Gaps = 37/298 (12%)

Query: 3   TLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVC 62
           T+G L GG GAL+YALE S V+A   E+HPP + WSHSG++ S DH S+RRGYEVYK VC
Sbjct: 44  TIGALTGGVGALIYALEQS-VEASGTEVHPPKMPWSHSGMIASLDHTSVRRGYEVYKQVC 102

Query: 63  AACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPN 122
           +ACHS ++I YRNL+GVSHTEAEAK EA  I V DGP++ GE + RPGKLSD FPSPYPN
Sbjct: 103 SACHSMQYIAYRNLIGVSHTEAEAKAEAAAITVRDGPDDSGEYYNRPGKLSDYFPSPYPN 162

Query: 123 EEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGV 182
           EEAARAANNGAYPPDLSYI  AR G EDY+F LLTG                Y DPPAGV
Sbjct: 163 EEAARAANNGAYPPDLSYIVSARKGGEDYIFSLLTG----------------YFDPPAGV 206

Query: 183 QIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
            +R+G Y+NPYF GGAI MAQ LYNE+IEYEDGTP T SQLAKDVSTFLKW  EPEHD R
Sbjct: 207 ALRDGQYYNPYFPGGAISMAQVLYNEVIEYEDGTPPTASQLAKDVSTFLKWTSEPEHDVR 266

Query: 243 KRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
           K+M IK                     VGLMTILT   +Y+KR+K+S+LK+RKI + P
Sbjct: 267 KQMLIKT--------------------VGLMTILTILAYYIKRHKWSTLKSRKIFFVP 304

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127393|ref|XP_002008153.1| GI13337 [Drosophila mojavensis] gi|193919762|gb|EDW18629.1| GI13337 [Drosophila mojavensis]

 Score =  364 bits (934), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/300 (60%), Positives = 209/300 (69%), Gaps = 37/300 (12%)

Query: 4   LGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCA 63
           +G + GG GALL+ALE S V+A   E+H P   WSH GL  S DH SIRRGYEVYK VC+
Sbjct: 45  IGAVTGGVGALLFALEQS-VEASGTEVHAPAQPWSHRGLFSSLDHQSIRRGYEVYKQVCS 103

Query: 64  ACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNE 123
           ACHS ++I YRNLVGVSHTE +AK EAE+I V DGP++ G  F RPGKLSD FPSPYPNE
Sbjct: 104 ACHSMQYIAYRNLVGVSHTEEQAKAEAEQITVRDGPDDTGNYFDRPGKLSDYFPSPYPNE 163

Query: 124 EAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQ 183
           EAARAANNGAYPPDLSYI  AR G EDY+F LL                TGY D PAGV 
Sbjct: 164 EAARAANNGAYPPDLSYIVSARKGGEDYIFSLL----------------TGYHDAPAGVV 207

Query: 184 IREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRK 243
           +REG YFNPYF GGAI MAQ LYNE+IEYEDGTP TQSQLAKDV+TFLKW  EPEHD RK
Sbjct: 208 LREGQYFNPYFPGGAISMAQVLYNEVIEYEDGTPPTQSQLAKDVATFLKWTSEPEHDERK 267

Query: 244 RMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303
           ++ IK                     +G++  LTA  +Y+KR+K+S+LK+RKI + P  K
Sbjct: 268 QLLIKV--------------------IGILGFLTAISYYIKRHKWSALKSRKIVFVPKEK 307

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195014170|ref|XP_001983972.1| GH16186 [Drosophila grimshawi] gi|193897454|gb|EDV96320.1| GH16186 [Drosophila grimshawi]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 185/300 (61%), Positives = 214/300 (71%), Gaps = 37/300 (12%)

Query: 4   LGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCA 63
           +G + GG G LL+ALE S VQA   E+HPP   W+H GL  S DH SIRRGYEVYK VC+
Sbjct: 45  VGAVTGGVGTLLFALEQS-VQASGTEVHPPAQPWTHKGLFSSLDHQSIRRGYEVYKQVCS 103

Query: 64  ACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNE 123
           ACHS ++I YRNL+GVSHTEAEAK EAE+IMV+DGP++ G  F RPGKLSD FPSPYPNE
Sbjct: 104 ACHSLQYIAYRNLIGVSHTEAEAKAEAEQIMVKDGPDDTGNFFDRPGKLSDYFPSPYPNE 163

Query: 124 EAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQ 183
           EAARAANNGAYPPDLSYI+ ARHG EDY+F LL                TGY D PAGV 
Sbjct: 164 EAARAANNGAYPPDLSYISSARHGGEDYIFALL----------------TGYHDAPAGVV 207

Query: 184 IREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRK 243
           +REG YFNPYF GGAI MAQ LYNE+IEYEDGTP TQSQLAKDV+TFLKW  EPEHD RK
Sbjct: 208 LREGQYFNPYFAGGAISMAQVLYNEVIEYEDGTPPTQSQLAKDVATFLKWTSEPEHDDRK 267

Query: 244 RMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303
           R+ IK                     +G++  LTA  +Y+KR+K+S+LK+RKI + P  K
Sbjct: 268 RLLIKV--------------------IGILGFLTAISYYIKRHKWSALKSRKIVFVPKEK 307

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235816|ref|XP_972044.2| PREDICTED: similar to AGAP006936-PA [Tribolium castaneum]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 183/286 (63%), Positives = 211/286 (73%), Gaps = 37/286 (12%)

Query: 15  LYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYR 74
           ++ALE S V+A DLELHPP   WSH+G+L S DH+S+RRGY+VYK VCAACHS RFI YR
Sbjct: 55  VFALEQS-VKASDLELHPPKNPWSHNGILSSLDHSSVRRGYQVYKQVCAACHSMRFIAYR 113

Query: 75  NLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAY 134
           NLVGVSHTE EAK EAEEIMV DGP+E G MF+RPGKLSD FP+PYPNEEAARAANNGA+
Sbjct: 114 NLVGVSHTEEEAKAEAEEIMVTDGPDENGNMFQRPGKLSDYFPNPYPNEEAARAANNGAF 173

Query: 135 PPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYF 194
           PPDLSYI +ARHG EDY+F LL                TGY D PAG+ +REG Y+NPYF
Sbjct: 174 PPDLSYIVLARHGGEDYIFSLL----------------TGYCDAPAGIVLREGQYYNPYF 217

Query: 195 LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLG 254
            GGAI MAQAL+NE+IEYEDGTPAT SQLAKDV+TFLKW  EPE D RKRM IK      
Sbjct: 218 PGGAISMAQALFNEVIEYEDGTPATASQLAKDVATFLKWTSEPEFDDRKRMVIK------ 271

Query: 255 VLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
                         A G+ T+L   ++Y+KR+K+ SLKTRKI +KP
Sbjct: 272 --------------ATGIFTLLIGIVYYMKRHKWVSLKTRKIEFKP 303

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004913|gb|EFA01361.1| mitochondrial cytochrome c1 [Tribolium castaneum]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 183/286 (63%), Positives = 211/286 (73%), Gaps = 37/286 (12%)

Query: 15  LYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYR 74
           ++ALE S V+A DLELHPP   WSH+G+L S DH+S+RRGY+VYK VCAACHS RFI YR
Sbjct: 56  VFALEQS-VKASDLELHPPKNPWSHNGILSSLDHSSVRRGYQVYKQVCAACHSMRFIAYR 114

Query: 75  NLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAY 134
           NLVGVSHTE EAK EAEEIMV DGP+E G MF+RPGKLSD FP+PYPNEEAARAANNGA+
Sbjct: 115 NLVGVSHTEEEAKAEAEEIMVTDGPDENGNMFQRPGKLSDYFPNPYPNEEAARAANNGAF 174

Query: 135 PPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYF 194
           PPDLSYI +ARHG EDY+F LL                TGY D PAG+ +REG Y+NPYF
Sbjct: 175 PPDLSYIVLARHGGEDYIFSLL----------------TGYCDAPAGIVLREGQYYNPYF 218

Query: 195 LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLG 254
            GGAI MAQAL+NE+IEYEDGTPAT SQLAKDV+TFLKW  EPE D RKRM IK      
Sbjct: 219 PGGAISMAQALFNEVIEYEDGTPATASQLAKDVATFLKWTSEPEFDDRKRMVIK------ 272

Query: 255 VLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
                         A G+ T+L   ++Y+KR+K+ SLKTRKI +KP
Sbjct: 273 --------------ATGIFTLLIGIVYYMKRHKWVSLKTRKIEFKP 304

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327288789|ref|XP_003229107.1| PREDICTED: cytochrome c1, heme protein, mitochondrial-like [Anolis carolinensis]

 Score =  355 bits (912), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 179/300 (59%), Positives = 208/300 (69%), Gaps = 37/300 (12%)

Query: 1   MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKN 60
           +  LGVL  G   L  AL S+ V AG+LELHPP   WSHSG L S DH+S+RRGY+VYK 
Sbjct: 15  LKVLGVLTAGGAGLAVALHSA-VSAGELELHPPSFPWSHSGPLSSLDHSSVRRGYQVYKQ 73

Query: 61  VCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPY 120
           VC+ACHS  ++ +RNL+GVSHTE EAK  AEE+ V+DGP+E GEMF RPGKLSD FP PY
Sbjct: 74  VCSACHSMEYLAFRNLIGVSHTEPEAKALAEEVEVQDGPDENGEMFMRPGKLSDYFPKPY 133

Query: 121 PNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPA 180
           PN EAARAANNGA PPDLSYI  ARHG EDYVF LLT                GY DPP 
Sbjct: 134 PNPEAARAANNGALPPDLSYIVNARHGGEDYVFSLLT----------------GYCDPPG 177

Query: 181 GVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHD 240
           GV +REGLY+NPYF G AIGMA  +YNEI+E+EDGTPAT SQ+AKDV TFL+W  EPEHD
Sbjct: 178 GVTMREGLYYNPYFPGEAIGMAPPIYNEILEFEDGTPATMSQIAKDVCTFLRWAAEPEHD 237

Query: 241 TRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
            RKRM +K +          GALL  L             +YLKR+K+S LK+RKI+Y+P
Sbjct: 238 HRKRMGLKVLLI--------GALLVPLT------------YYLKRHKWSVLKSRKIAYRP 277

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348521806|ref|XP_003448417.1| PREDICTED: cytochrome c1, heme protein, mitochondrial-like isoform 1 [Oreochromis niloticus]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 178/300 (59%), Positives = 208/300 (69%), Gaps = 37/300 (12%)

Query: 1   MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKN 60
           +TTLGV+  G   L   L  S V+A +LELHPP   WSH+G L S DHASIRRGY+VYK 
Sbjct: 43  LTTLGVVTAGGAGLALILHQS-VKASELELHPPQYPWSHAGPLSSLDHASIRRGYQVYKQ 101

Query: 61  VCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPY 120
           VC+ACHS  ++ +RNLVGVSHTE E K  AEE+ V DGP+E GEMF RPGKLSD FP PY
Sbjct: 102 VCSACHSMEYLAFRNLVGVSHTEDEVKAIAEEVEVVDGPDESGEMFTRPGKLSDYFPKPY 161

Query: 121 PNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPA 180
           PN EAARAANNGA PPDLSYI  ARHG EDYVF LLTG                Y DPPA
Sbjct: 162 PNPEAARAANNGALPPDLSYIVNARHGGEDYVFSLLTG----------------YCDPPA 205

Query: 181 GVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHD 240
           GV +REGLY+NPYF G AIGMA  +YNEI+EY+DGTPAT SQ+AKDV TFL+W  EPEHD
Sbjct: 206 GVTVREGLYYNPYFPGQAIGMAPPIYNEILEYDDGTPATMSQVAKDVCTFLRWAAEPEHD 265

Query: 241 TRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
            RKRM +K      +L G A              I+   L+Y+KR+++S LK+RKI+Y+P
Sbjct: 266 QRKRMGLK------LLMGSA--------------IIVPLLYYMKRHRWSVLKSRKIAYRP 305

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|229606083|ref|NP_001153450.1| cytochrome c1, heme protein, mitochondrial [Nasonia vitripennis]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/299 (59%), Positives = 211/299 (70%), Gaps = 37/299 (12%)

Query: 2   TTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNV 61
           T LGV AGG GAL++ L+SS V+A +L  HPPH  WS SGL DS DHAS+RRG+EVYKNV
Sbjct: 43  TCLGVAAGGIGALIFTLDSS-VRASELVAHPPHYHWSFSGLFDSLDHASMRRGWEVYKNV 101

Query: 62  CAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYP 121
           C+ACHS +++ YR+LVGV+HTE EAK  AEEI V+DGPN+ GE F RPGKLSD  PSPYP
Sbjct: 102 CSACHSLKYVAYRHLVGVTHTEDEAKALAEEIQVQDGPNDVGEYFMRPGKLSDYVPSPYP 161

Query: 122 NEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAG 181
           NEEAARAANNGAYPPDLSYI  ARHG E+YVF LL                TGY D PAG
Sbjct: 162 NEEAARAANNGAYPPDLSYIVNARHGGENYVFSLL----------------TGYTDAPAG 205

Query: 182 VQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDT 241
           V +REG YFNPYF GGAIGM Q +Y+E++E+EDGTP T SQ+AKDV+TFL W    E D 
Sbjct: 206 VNLREGQYFNPYFPGGAIGMGQVIYDEVLEFEDGTPPTSSQIAKDVATFLMWTSNHEFDE 265

Query: 242 RKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
           RK++AIK                     +G+ ++L A  FYLKR+KFS +KT K++Y P
Sbjct: 266 RKKLAIK--------------------VIGIGSLLCAFFFYLKRHKFSHIKTTKLAYIP 304

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
ZFIN|ZDB-GENE-031105-2	307	cyc1 "cytochrome c-1" [Danio r	0.695	0.690	0.596	1.6e-75
FB|FBgn0035600	307	CG4769 [Drosophila melanogaste	0.688	0.684	0.601	1.2e-73
UNIPROTKB|P00125	325	CYC1 "Cytochrome c1, heme prot	0.701	0.658	0.582	5.3e-73
UNIPROTKB|E2REM0	325	CYC1 "Uncharacterized protein"	0.701	0.658	0.582	5.3e-73
MGI|MGI:1913695	325	Cyc1 "cytochrome c-1" [Mus mus	0.701	0.658	0.578	1.4e-72
RGD|1306597	326	Cyc1 "cytochrome c-1" [Rattus	0.701	0.656	0.578	2.3e-72
UNIPROTKB|P08574	325	CYC1 "Cytochrome c1, heme prot	0.701	0.658	0.569	1.6e-71
FB|FBgn0039651	344	CG14508 [Drosophila melanogast	0.698	0.619	0.523	1.4e-62
CGD|CAL0005851	288	CYT1 [Candida albicans (taxid:	0.691	0.732	0.508	3.3e-61
UNIPROTKB|Q59ZJ2	288	CYT1 "Putative uncharacterized	0.691	0.732	0.508	3.3e-61

ZFIN|ZDB-GENE-031105-2 cyc1 "cytochrome c-1" [Danio rerio (taxid:7955)]

 Score = 702 (252.2 bits), Expect = 1.6e-75, Sum P(2) = 1.6e-75
 Identities = 136/228 (59%), Positives = 155/228 (67%)

Query:    23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
             V+A DLELHPP   WSH G L S DHAS+RRGY+VYK VC+ACHS  ++ +RNLVGVSHT
Sbjct:    64 VKASDLELHPPTYPWSHGGFLSSLDHASVRRGYQVYKQVCSACHSMEYLAFRNLVGVSHT 123

Query:    83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
             E E K  AEEI V DGP++ GEMF RPGKLSD FP                   DLSYI 
Sbjct:   124 EDEVKTLAEEIEVVDGPDDNGEMFTRPGKLSDYFPKPYANPEAARAANNGALPPDLSYIV 183

Query:   143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
              ARHG EDYVF LLTGY DPPAG                V +REGLY+NPYF G AIGMA
Sbjct:   184 NARHGGEDYVFSLLTGYCDPPAG----------------VSLREGLYYNPYFPGQAIGMA 227

Query:   203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
               +YNE++EY+DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +
Sbjct:   228 PPIYNEVLEYDDGTPATMSQVAKDVCTFLRWAAEPEHDDRKRMGLKVL 275

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

FB|FBgn0035600 CG4769 [Drosophila melanogaster (taxid:7227)]

 Score = 683 (245.5 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
 Identities = 136/226 (60%), Positives = 155/226 (68%)

Query:    23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
             VQA   E+H P   W+H GL D+ DH S+RRGYEVYK VC+ACHS ++I YRNLVGV+HT
Sbjct:    63 VQASGGEVHSPAQLWNHKGLFDALDHQSVRRGYEVYKQVCSACHSMQYIAYRNLVGVTHT 122

Query:    83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
             EAEAK EAE+I V+DGP++ G  + RPGKLSD FPS                  DLSYI 
Sbjct:   123 EAEAKAEAEQITVKDGPDDTGNYYTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSYIV 182

Query:   143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
              AR G EDY+F LLTGY          H      D PAGV +REG YFNPYF GGAI MA
Sbjct:   183 SARKGGEDYIFSLLTGY----------H------DAPAGVVLREGQYFNPYFPGGAISMA 226

Query:   203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIK 248
             Q LYNE+IEYEDGTP TQSQLAKDV+TFLKW  EPEHD RK++ IK
Sbjct:   227 QVLYNEVIEYEDGTPPTQSQLAKDVATFLKWTSEPEHDDRKQLLIK 272

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0045153 "electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity" evidence=ISS

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0020037 "heme binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|P00125 CYC1 "Cytochrome c1, heme protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 687 (246.9 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 134/230 (58%), Positives = 155/230 (67%)

Query:    21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
             S V A DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV 
Sbjct:    80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139

Query:    81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSY 140
             +TE EAK  AEE+ V+DGPNE GEMF RPGKLSD FP                   DLSY
Sbjct:   140 YTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199

Query:   141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
             I  ARHG EDYVF LLTGY +PP G                V +REGLYFNPYF G AIG
Sbjct:   200 IVRARHGGEDYVFSLLTGYCEPPTG----------------VSLREGLYFNPYFPGQAIG 243

Query:   201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             MA  +YNE++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +
Sbjct:   244 MAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKML 293

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0030054 "cell junction" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

UNIPROTKB|E2REM0 CYC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 687 (246.9 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 134/230 (58%), Positives = 156/230 (67%)

Query:    21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
             S V A DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV 
Sbjct:    80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139

Query:    81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSY 140
             +TE EAK  AEE+ V+DGPNE GEMF RPGKLSD FP                   DLSY
Sbjct:   140 YTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199

Query:   141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
             IT ARHG EDYVF LLTGY +PP G                V +REGLYFNPYF G AIG
Sbjct:   200 ITRARHGGEDYVFSLLTGYCEPPTG----------------VSLREGLYFNPYFPGQAIG 243

Query:   201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             MA  +Y+E++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +
Sbjct:   244 MAPPIYDEVLEFDDGTPATMSQVAKDVCTFLRWASEPEHDHRKRMGLKML 293

GO:0030054 "cell junction" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

MGI|MGI:1913695 Cyc1 "cytochrome c-1" [Mus musculus (taxid:10090)]

 Score = 685 (246.2 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 133/230 (57%), Positives = 155/230 (67%)

Query:    21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
             S V A DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV 
Sbjct:    80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139

Query:    81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSY 140
             +TE EAK  AEE+ V+DGPN+ GEMF RPGKLSD FP                   DLSY
Sbjct:   140 YTEEEAKALAEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199

Query:   141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
             I  ARHG EDYVF LLTGY +PP G                V +REGLYFNPYF G AIG
Sbjct:   200 IVRARHGGEDYVFSLLTGYCEPPTG----------------VSLREGLYFNPYFPGQAIG 243

Query:   201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             MA  +Y E++EY+DGTPAT SQ+AKDV+TFL+W  EPEHD RKRM +K +
Sbjct:   244 MAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKML 293

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

RGD|1306597 Cyc1 "cytochrome c-1" [Rattus norvegicus (taxid:10116)]

 Score = 683 (245.5 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 133/230 (57%), Positives = 154/230 (66%)

Query:    21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
             S V A DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV 
Sbjct:    81 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 140

Query:    81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSY 140
             +TE EAK  AEE+ V+DGPNE G MF RPGKLSD FP                   DLSY
Sbjct:   141 YTEEEAKALAEEVEVQDGPNEDGNMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 200

Query:   141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
             I  ARHG EDYVF LLTGY +PP G                V +REGLYFNPYF G AIG
Sbjct:   201 IVRARHGGEDYVFSLLTGYCEPPTG----------------VSLREGLYFNPYFPGQAIG 244

Query:   201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             MA  +Y E++EY+DGTPAT SQ+AKDV+TFL+W  EPEHD RKRM +K +
Sbjct:   245 MAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKML 294

GO:0003674 "molecular_function" evidence=ND

GO:0005506 "iron ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0033762 "response to glucagon stimulus" evidence=IDA

UNIPROTKB|P08574 CYC1 "Cytochrome c1, heme protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 670 (240.9 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
 Identities = 131/230 (56%), Positives = 151/230 (65%)

Query:    21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
             S V A DLELHPP   WSH GLL S DH SIRRG++VYK VCA+CHS  F+ YR+LVGV 
Sbjct:    80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVC 139

Query:    81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSY 140
             +TE EAK  A E+ V+DGPNE GEMF RPGKL D FP                   DLSY
Sbjct:   140 YTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSY 199

Query:   141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
             I  ARHG EDYVF LLTGY +PP G                V +REGLYFNPYF G AI 
Sbjct:   200 IVRARHGGEDYVFSLLTGYCEPPTG----------------VSLREGLYFNPYFPGQAIA 243

Query:   201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             MA  +Y +++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +
Sbjct:   244 MAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKML 293

GO:0005506 "iron ion binding" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0045155 "electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0030054 "cell junction" evidence=IDA

FB|FBgn0039651 CG14508 [Drosophila melanogaster (taxid:7227)]

 Score = 587 (211.7 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
 Identities = 121/231 (52%), Positives = 146/231 (63%)

Query:    19 ESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVG 78
             E+S   + D  +HP H  W+H GLL + D  S+RRGY VYK VC++CHS +++ YRNLVG
Sbjct:    63 ETSVDASSDC-VHPAHQHWNHKGLLSALDKESVRRGYTVYKEVCSSCHSLQYMAYRNLVG 121

Query:    79 VSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDL 138
             V  TEAEAK EAE I V DGPNE+GE ++RPGKLSD FPS                  DL
Sbjct:   122 VCMTEAEAKAEAEAITVRDGPNEEGEYYERPGKLSDHFPSPYANEEAARSANNGSYPPDL 181

Query:   139 SYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGA 198
             SYI  AR G EDYVF LLTGY DPPAG   F L             R+GLYFNPYF GGA
Sbjct:   182 SYIVSARKGGEDYVFSLLTGYCDPPAG---FAL-------------RDGLYFNPYFSGGA 225

Query:   199 IGMAQALYNEIIEYED-GTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIK 248
             I M + + NE++ +ED   PA+ +Q+AKDV  FLKW  EPE D R+ + IK
Sbjct:   226 IAMGKVVDNEVVSFEDPNVPASAAQIAKDVCVFLKWTSEPETDERRLLLIK 276

GO:0006119 "oxidative phosphorylation" evidence=ISS

GO:0045153 "electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity" evidence=ISS

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISS

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISS

GO:0020037 "heme binding" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

CGD|CAL0005851 CYT1 [Candida albicans (taxid:5476)]

 Score = 593 (213.8 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 115/226 (50%), Positives = 146/226 (64%)

Query:    25 AGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEA 84
             A +  LHPP   W H+G+ ++FDHASIRRG++VY+ VCAACHS   I +RNLVGVSHT +
Sbjct:    45 AAEHGLHPPAYNWPHNGMFETFDHASIRRGFQVYREVCAACHSLDRIAWRNLVGVSHTTS 104

Query:    85 EAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMA 144
             EAK  AEE+  +D P+++G+  KRPGKL+D  P                   DLS I  A
Sbjct:   105 EAKAMAEELEYDDEPDDEGKPRKRPGKLADYIPGPYENEQAARAANQGAYPPDLSLIVKA 164

Query:   145 RHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQA 204
             RHG  DY+F LLTGY D               +PPAGV + EG  +NPYF GGAI M + 
Sbjct:   165 RHGGSDYIFSLLTGYPD---------------EPPAGVVLPEGSNYNPYFPGGAIAMGRV 209

Query:   205 LYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             L+++++EYEDGTPAT SQ+AKDVSTFL W  EPEHD RK+  +K +
Sbjct:   210 LFDDLVEYEDGTPATTSQMAKDVSTFLNWASEPEHDDRKKWGLKAL 255

GO:0005886 "plasma membrane" evidence=IDA

GO:0009055 "electron carrier activity" evidence=NAS

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0005506 "iron ion binding" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0045153 "electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity" evidence=IEA

UNIPROTKB|Q59ZJ2 CYT1 "Putative uncharacterized protein CYT1" [Candida albicans SC5314 (taxid:237561)]

 Score = 593 (213.8 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
 Identities = 115/226 (50%), Positives = 146/226 (64%)

Query:    25 AGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEA 84
             A +  LHPP   W H+G+ ++FDHASIRRG++VY+ VCAACHS   I +RNLVGVSHT +
Sbjct:    45 AAEHGLHPPAYNWPHNGMFETFDHASIRRGFQVYREVCAACHSLDRIAWRNLVGVSHTTS 104

Query:    85 EAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMA 144
             EAK  AEE+  +D P+++G+  KRPGKL+D  P                   DLS I  A
Sbjct:   105 EAKAMAEELEYDDEPDDEGKPRKRPGKLADYIPGPYENEQAARAANQGAYPPDLSLIVKA 164

Query:   145 RHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQA 204
             RHG  DY+F LLTGY D               +PPAGV + EG  +NPYF GGAI M + 
Sbjct:   165 RHGGSDYIFSLLTGYPD---------------EPPAGVVLPEGSNYNPYFPGGAIAMGRV 209

Query:   205 LYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCM 250
             L+++++EYEDGTPAT SQ+AKDVSTFL W  EPEHD RK+  +K +
Sbjct:   210 LFDDLVEYEDGTPATTSQMAKDVSTFLNWASEPEHDDRKKWGLKAL 255

GO:0005886 "plasma membrane" evidence=IDA

GO:0009055 "electron carrier activity" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P00125	CY1_BOVIN	No assigned EC number	0.5785	0.8	0.7507	yes	N/A
P29610	CY12_SOLTU	No assigned EC number	0.5051	0.8262	0.9692	N/A	N/A
Q54D07	CY1_DICDI	No assigned EC number	0.4381	0.8590	0.9527	yes	N/A
P07143	CY1_YEAST	No assigned EC number	0.4967	0.8688	0.8576	yes	N/A
Q9D0M3	CY1_MOUSE	No assigned EC number	0.575	0.8	0.7507	yes	N/A
P08574	CY1_HUMAN	No assigned EC number	0.5678	0.8	0.7507	yes	N/A
O59680	CY1_SCHPO	No assigned EC number	0.4569	0.8622	0.8566	yes	N/A
Q00988	CY1_KLULA	No assigned EC number	0.4866	0.8622	0.9006	yes	N/A
P23135	CY1_RHORU	No assigned EC number	0.3828	0.8590	0.9632	yes	N/A
Q02760	CY1_RHOSH	No assigned EC number	0.3112	0.6819	0.7298	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	305
pfam02167	217	pfam02167, Cytochrom_C1, Cytochrome C1 family	1e-112
COG2857	250	COG2857, CYT1, Cytochrome c1 [Energy production an	5e-63

>gnl|CDD|216912 pfam02167, Cytochrom_C1, Cytochrome C1 family

 Score =  324 bits (832), Expect = e-112
 Identities = 124/231 (53%), Positives = 147/231 (63%), Gaps = 22/231 (9%)

Query: 37  WSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVE 96
           WS +G   SFD AS++RG +VY  VCAACHS +++ YR L  +  TE E K  A E  V+
Sbjct: 1   WSFAGPFGSFDKASLQRGAQVYTEVCAACHSLKYVRYRRLADLGLTEDEVKANAAEYEVK 60

Query: 97  DGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLL 156
           DGP+  GEMF+RPGK  DTFPSPYPNEEAAR ANNGA PPDLS I  ARHG  DY++ LL
Sbjct: 61  DGPDT-GEMFERPGKPGDTFPSPYPNEEAARWANNGAAPPDLSLIAKARHGGPDYIYSLL 119

Query: 157 TGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGT 216
           TGY D PA                 V++R G Y+NPYF GGAI M   L +  +EYEDGT
Sbjct: 120 TGYYDDPA-----------------VELRPGGYYNPYFPGGAIAMPPPLSDGQVEYEDGT 162

Query: 217 PATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYAL 267
           PAT  Q+AKDV  FL W  EPE D RKR+ +K +  L +L      LLY L
Sbjct: 163 PATYDQMAKDVVAFLMWAAEPELDERKRLGLKVLLFLLILTV----LLYLL 209

Length = 217

>gnl|CDD|225413 COG2857, CYT1, Cytochrome c1 [Energy production and conversion]

 Score =  199 bits (507), Expect = 5e-63
 Identities = 94/246 (38%), Positives = 119/246 (48%), Gaps = 22/246 (8%)

Query: 24  QAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTE 83
            A   EL      W   G  D FD  S++RG ++YK  C+ACHS +   YR L  +   +
Sbjct: 16  AAPFKELAHGKEVWLFKGPFDLFDKGSLQRGAQLYKEYCSACHSLKLQRYRRLKDLGLPD 75

Query: 84  AEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITM 143
            E K  A E  VED P + G MF RP   +D F +P P+   A  AN GA P DL     
Sbjct: 76  DE-KFLALEFTVEDKPGDTGHMFMRPADAADWFGAPPPDLTLAARANGGAAPYDLLRQFY 134

Query: 144 AR-HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGG-AIGM 201
           AR HG  DY+  LLTGY+D                PPAG++  +G  +NPYF G   I +
Sbjct: 135 ARCHGVPDYINSLLTGYVDL---------------PPAGLRTPQGTSYNPYFEGELGIFI 179

Query: 202 AQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAG 261
           A  L ++   Y  G PA   Q  KD+  +LKW  EPE + RKR+  K M  L V      
Sbjct: 180 ADPLKDKPGTYMPGNPALTDQEVKDLVAYLKWAAEPEKEERKRLGFKVMIFLVVFTI--- 236

Query: 262 ALLYAL 267
            L Y L
Sbjct: 237 -LAYLL 241

Length = 250

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG3052|consensus	311		100.0
PF02167	219	Cytochrom_C1: Cytochrome C1 family; InterPro: IPR0	100.0
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	100.0
TIGR03045	159	PS_II_C550 cytochrome c-550. Members of this prote	98.01
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	97.57
PTZ00405	114	cytochrome c; Provisional	97.53
TIGR02603	133	CxxCH_TIGR02603 putative heme-binding domain, Pire	97.44
PRK13622	180	psbV cytochrome c-550; Provisional	97.33
CHL00133	163	psbV photosystem II cytochrome c550; Validated	97.19
PF13442	67	Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type,	97.18
PF00034	91	Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cyt	97.14
PRK13619	160	psbV cytochrome c-550; Provisional	97.13
PRK13617	170	psbV cytochrome c-550; Provisional	97.09
PRK13618	163	psbV cytochrome c-550; Provisional	96.97
TIGR03872	133	cytochrome_MoxG cytochrome c(L), periplasmic. This	96.86
PRK13621	170	psbV cytochrome c-550; Provisional	96.71
TIGR03874	143	4cys_cytochr c-type cytochrome, methanol metabolis	96.68
PRK14487	217	cbb3-type cytochrome c oxidase subunit II; Provisi	96.59
TIGR03046	155	PS_II_psbV2 photosystem II cytochrome PsbV2. Membe	96.54
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	96.47
PTZ00048	115	cytochrome c; Provisional	96.27
PRK13620	215	psbV cytochrome c-550; Provisional	96.1
COG2857	250	CYT1 Cytochrome c1 [Energy production and conversi	96.08
CHL00183	108	petJ cytochrome c553; Provisional	95.86
TIGR00781	232	ccoO cytochrome c oxidase, cbb3-type, subunit II.	95.6
COG2010	150	CccA Cytochrome c, mono- and diheme variants [Ener	95.1
PRK13697	111	cytochrome c6; Provisional	95.1
PF14495	135	Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC	94.95
PF09098	167	Dehyd-heme_bind: Quinohemoprotein amine dehydrogen	94.51
COG2863	121	Cytochrome c553 [Energy production and conversion]	94.36
PRK14486	294	putative bifunctional cbb3-type cytochrome c oxida	94.1
TIGR00782	285	ccoP cytochrome c oxidase, cbb3-type, subunit III.	93.51
COG3474	135	Cytochrome c2 [Energy production and conversion]	91.59
COG3258	293	Cytochrome c [Energy production and conversion]	89.7
COG4654	110	Cytochrome c551/c552 [Energy production and conver	88.14
PF06537	499	DUF1111: Protein of unknown function (DUF1111); In	85.31
PF02433	226	FixO: Cytochrome C oxidase, mono-heme subunit/FixO	83.64
TIGR03791	291	TTQ_mauG tryptophan tryptophylquinone biosynthesis	82.65

>KOG3052|consensus

Probab=100.00  E-value=1.6e-98  Score=692.57  Aligned_cols=258  Identities=67%  Similarity=1.135  Sum_probs=250.6

Q ss_pred             hhhhHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHH
Q psy10277          9 GGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKR   88 (305)
Q Consensus         9 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~   88 (305)
                      .++++++|+++.+ +.|+++..|+|+++|+|+|+|++||++|+|||+|||+|||++||||+++.||+|+++-+||||+|+
T Consensus        54 g~~~ll~yal~~s-vsAs~~~lh~~~~~W~h~g~lss~DhaSiRRGyqVYkqVCaaCHSm~~iayR~lVgv~~Te~EaKa  132 (311)
T KOG3052|consen   54 GIGGLLVYALETS-VSASEHGLHPPAYPWPHSGLLSSFDHASIRRGYQVYKQVCAACHSMDLIAYRHLVGVCYTEEEAKA  132 (311)
T ss_pred             hhhHHHHHHhhcc-cccccCCcCCccCCCCCCCccccccHHHHhhhHHHHHHHHHHhhhhHHHHHHhhhhhhccHHHHHH
Confidence            3335577788887 888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccCCCCcCCCCccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcch
Q psy10277         89 EAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYV  168 (305)
Q Consensus        89 ~a~~~~v~dgp~~~g~~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v  168 (305)
                      +|+|++|.|||||+|+||+||||++|.||+||||++|||++|+|++|||||+|++||+||.|||||+||           
T Consensus       133 ~A~eiev~Dgpdd~G~~~~RPGkLsD~~P~PYpNeeAAraANnGA~PPDLS~iv~aRhgG~DYvfSLLT-----------  201 (311)
T KOG3052|consen  133 MAAEIEVVDGPDDEGEMFTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSLIVKARHGGEDYVFSLLT-----------  201 (311)
T ss_pred             hhhheeeccCCCCCCCcccCCccccccCCCCCCCHHHHHHhcCCCCCCCchhhhhhhcCCcceeeehhh-----------
Confidence            999999999999999999999999999999999999999999999999999999999999999999999           


Q ss_pred             hhcccccCCCCCCcccCCCcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhcee
Q psy10277        169 FHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIK  248 (305)
Q Consensus       169 ~~~l~GY~dpP~G~~~~~g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~  248 (305)
                           ||+|||+|+.+++|+||||||||+.|+||++|.|+.||||||||+|.+||||||++||.|++||++|+||+||+|
T Consensus       202 -----GY~epPAGv~l~~G~~fNPyFpGgaIaMa~~l~de~vEyeDgtPAT~sQ~aKDV~~FL~WasEPehD~RK~~g~K  276 (311)
T KOG3052|consen  202 -----GYCEPPAGVSLREGLYFNPYFPGGAIAMAKVLFDEVVEYEDGTPATMSQMAKDVVTFLHWASEPEHDERKLMGLK  276 (311)
T ss_pred             -----CCCCCCCCcccCCCcccCCCCCCcccccchhhcccceeecCCCchhHHHHHHHHHHHHHhccCcchhHHHHhhhH
Confidence                 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCCC
Q psy10277        249 CMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK  303 (305)
Q Consensus       249 v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~~  303 (305)
                      |                    ++.|.++++++|+.||.+|+.+|+|||.|+|+++
T Consensus       277 ~--------------------i~il~~l~~~s~y~KR~kWs~lKsrK~~f~~~~~  311 (311)
T KOG3052|consen  277 V--------------------IFILSFLTLLSYYIKRHKWSVLKSRKLVFDPPKK  311 (311)
T ss_pred             H--------------------HHHHHHHHHHHHHHHHhhccccccceEEecCCCC
Confidence            9                    9999999999999999999999999999999764

>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes

Probab=100.00  E-value=1.4e-87  Score=612.11  Aligned_cols=218  Identities=56%  Similarity=0.987  Sum_probs=197.4

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccC-CCCCHHHHHHHHHHhcccCCCCcCCCCccCCCCCCCC
Q psy10277         37 WSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVG-VSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDT  115 (305)
Q Consensus        37 w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~-~g~t~~evk~~a~~~~v~dgp~~~g~~~~r~~~~~D~  115 (305)
                      |+|+|+++++|++|||||+|||+|||++||||+|+|||||.+ +++||+|||+++++++|.| |||+|+||+|+++++|.
T Consensus         1 w~~~g~~~~~D~aslqRG~qvy~~~C~~CHsl~~~~y~~L~~d~~~~e~~vk~~a~~~~v~d-~~d~g~~~~r~~~~~D~   79 (219)
T PF02167_consen    1 WSFAGPFGSFDKASLQRGAQVYMEVCASCHSLKYVRYRRLADDLGLTEDEVKAIAAEYQVPD-PDDEGEMFERPAKPSDY   79 (219)
T ss_dssp             -TTSSTT----HHHHHHHHHHHHHTGGGTSBCTTCBGGGGTTSTSSHHHHHHHHHHTSEEEE-TTTTSSTEEEEHHTTSB
T ss_pred             CCCCCCCCcccHHHHHHHHHHHHHHHhhccccccccHHHHhhccCCCHHHHHHHHHhcccCC-cccCCccccccchhhcc
Confidence            999999999999999999999999999999999999999976 9999999999999999999 99999999999999999


Q ss_pred             CCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCCCcccCCCCC
Q psy10277        116 FPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFL  195 (305)
Q Consensus       116 ~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~g~~yN~~fp  195 (305)
                      |++||+|++||+++|+|++|||||||+|+|++|+||||||||                ||.+||.|+.+++|.+||+|||
T Consensus        80 ~~~p~~~~~aa~~~n~Ga~PPDLSli~raR~~G~dyiys~L~----------------gy~~~p~~~~~~~~~~~N~~fp  143 (219)
T PF02167_consen   80 FPSPYPNEDAARAANNGAVPPDLSLIARARHGGADYIYSLLT----------------GYYEDPAGVSVRPGGYYNPYFP  143 (219)
T ss_dssp             E--SSSSHHHHHHTTTTTTS-BCTTTTTSSTTHHHHHHHHHC----------------TBSS--TTGTTSTTSEEETTST
T ss_pred             cCCCCCCHHHHHHHhCCCCCCchHHHHHHhcCchHHHHHHHh----------------ccCCCcccccCCCCCccccccC
Confidence            999999999999999999999999999999999999999999                6778899999999999999999


Q ss_pred             CCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHH
Q psy10277        196 GGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTI  275 (305)
Q Consensus       196 g~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~i  275 (305)
                      |+.|+||+||++++|+|+||||+|++|||+||||||+|+|||++++||+||+||                    |+||+|
T Consensus       144 g~~iaMP~~L~~~~v~y~dGt~at~~q~a~DVv~FL~w~aeP~~~~R~~~G~~v--------------------l~fL~i  203 (219)
T PF02167_consen  144 GGAIAMPPPLSDGQVEYDDGTPATVDQMAKDVVNFLAWAAEPEKDERKRMGLKV--------------------LGFLLI  203 (219)
T ss_dssp             TSEESS--TSSTTSS-BTTTB---HHHHHHHHHHHHHHHH-TTHHHHHHHHHHH--------------------HHHHHH
T ss_pred             CCcccchhhhhhhcccccCCCcchHHHHHHHHHHHHHHHcCchHHHHHHHHHHH--------------------HHHHHH
Confidence            999999999999999999999999999999999999999999999999999999                    999999


Q ss_pred             HHHHHHHHHHhhcccC
Q psy10277        276 LTAALFYLKRYKFSSL  291 (305)
Q Consensus       276 l~~l~y~lkr~~W~~i  291 (305)
                      |++++|++||++||+|
T Consensus       204 l~~l~y~~kk~~W~dV  219 (219)
T PF02167_consen  204 LTVLAYLLKKEYWSDV  219 (219)
T ss_dssp             HHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHccCC
Confidence            9999999999999986

It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=100.00  E-value=1.8e-51  Score=380.85  Aligned_cols=220  Identities=40%  Similarity=0.693  Sum_probs=212.5

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCccCCCCCCCC
Q psy10277         36 KWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDT  115 (305)
Q Consensus        36 ~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~~r~~~~~D~  115 (305)
                      .|.+.++++.+|++++|||+|+|+++|.+|||+++++|+++.++|+++++ +.++.++.+.|++++.++||.|++..+|.
T Consensus        28 ~~~~~~~~~~~d~~~lq~g~~~~~~~c~~chs~~~~~~~~~~d~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  106 (250)
T COG2857          28 VWLFKGPFDLFDKGSLQRGAQLYKEYCSACHSLKLQRYRRLKDLGLPDDE-KFLALEFTVEDKPGDTGHMFMRPADAADW  106 (250)
T ss_pred             cccccccchhhhhHHhhhceeeeecCChhhcccccccccccccccCCchh-ccccccccccCCCccccccccCccchhhh
Confidence            99999999999999999999999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHhCCCCCCCchhHHhhh-cCCchhHHHhhhcCCCCCCCcchhhcccccCC-CCCCcccCCCcccCCC
Q psy10277        116 FPSPYPNEEAARAANNGAYPPDLSYITMAR-HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMD-PPAGVQIREGLYFNPY  193 (305)
Q Consensus       116 ~~sp~~n~~aA~~an~Ga~PPDLSliaraR-~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~d-pP~G~~~~~g~~yN~~  193 (305)
                      |+.|++++++++.+++|+.|||++...++| +++++++++.++                ||.| +|.|..+.+|..+|++
T Consensus       107 ~~a~~pd~~~~a~a~~~a~~~~~~~~~~~~ch~~~~~~~~~~t----------------~~~~l~p~g~~~~~g~~~~~~  170 (250)
T COG2857         107 FGAPPPDLTLAARANGGAAPYDLLRQFYARCHGVPDYINSLLT----------------GYVDLPPAGLRTPQGTSYNPY  170 (250)
T ss_pred             cCCCCCchhhhhhhhcccchHHHHHHHHhhcccCCCCcCeeec----------------CCCCCCCcccccCCccccccc
Confidence            999999999999999999999999999999 888899988888                7877 8999999999999999


Q ss_pred             CCC-CccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHH
Q psy10277        194 FLG-GAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGL  272 (305)
Q Consensus       194 fpg-~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~f  272 (305)
                      |+| ..+.|++|+.+..+++.+|+|++.||+++||||||+|++||++++||+||++|                    |+|
T Consensus       171 ~~~~~~~~i~~p~~~k~~~~m~~~~~~tdq~~~dlvaYL~~~~ep~~~~rk~~g~~v--------------------~~f  230 (250)
T COG2857         171 FEGELGIFIADPLKDKPGTYMPGNPALTDQEVKDLVAYLKWAAEPEKEERKRLGFKV--------------------MIF  230 (250)
T ss_pred             chhhHhhhccCccccCCcCCCCCChhhHHHHHHHHHHHHHHccCccHHHhhcCCeee--------------------hhH
Confidence            998 88999999999999999999999999999999999999999999999999999                    999


Q ss_pred             HHHHHHHHHHHHHhhcccCC
Q psy10277        273 MTILTAALFYLKRYKFSSLK  292 (305)
Q Consensus       273 l~il~~l~y~lkr~~W~~i~  292 (305)
                      |+||++|+|++||++|+++|
T Consensus       231 l~~~~~l~~~~k~~~w~~~~  250 (250)
T COG2857         231 LVVFTILAYLLKKEYWSDVH  250 (250)
T ss_pred             HHHHHHHHHHHHHHHhhcCC
Confidence            99999999999999999997

>TIGR03045 PS_II_C550 cytochrome c-550

Probab=98.01  E-value=2.2e-05  Score=69.53  Aligned_cols=45  Identities=20%  Similarity=0.525  Sum_probs=39.7

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS   67 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS   67 (305)
                      +.|.+-...+...+++..|-.-++..+++.+|.++|.+.|++||.
T Consensus        23 ~~a~~~~~~~~t~~~~~~g~~~~~~~~~~~~Gk~lF~~~Ca~CH~   67 (159)
T TIGR03045        23 AQAAELDEETRTVPLNSTGETVTLTEEQVKRGKRLFNTACGTCHV   67 (159)
T ss_pred             HHHHhcccccceeeecCCCCeEEeChHhHHHHHHHHHHHHHHhCC
Confidence            556666667888999999988889999999999999999999996

Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=97.57  E-value=0.0004  Score=66.69  Aligned_cols=24  Identities=17%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277        132 GAYPPDLSYITMARHGAEDYVFHLLT  157 (305)
Q Consensus       132 Ga~PPDLSliaraR~~G~dyIYs~L~  157 (305)
                      +..=|||+.+..-|  ..+|++.+|.
T Consensus       101 ~r~GPDL~~vG~r~--~~~w~~~~l~  124 (294)
T PRK14486        101 KRTGPDLARIGGKY--PDAWHYAHFE  124 (294)
T ss_pred             CCCCCchhhhcccC--CHHHHHHHHh
Confidence            55679999998655  5899999988

>PTZ00405 cytochrome c; Provisional

Probab=97.53  E-value=9.4e-05  Score=61.86  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHhhccccccc
Q psy10277         48 HASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        48 ~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+...||.++|.+.|++||++.
T Consensus        11 ~gd~~~G~~lF~~~C~aCH~~~   32 (114)
T PTZ00405         11 PGDAERGEKLFKGRAAQCHTAT   32 (114)
T ss_pred             ccCHHHHHHHHHhhhHhhCCCC
Confidence            3467899999998999999964

>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type

Probab=97.44  E-value=0.00013  Score=61.70  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+++|.++|.+.|++||+..
T Consensus         2 d~~~G~~~f~~~C~~CH~~~   21 (133)
T TIGR02603         2 DAEKGKAVYAQRCYVCHRIG   21 (133)
T ss_pred             CHHHHHHHHHhHHHHhCCCC
Confidence            46899999999999999974

This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).

>PRK13622 psbV cytochrome c-550; Provisional

Probab=97.33  E-value=0.00044  Score=62.55  Aligned_cols=51  Identities=20%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             hHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         12 GALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        12 ~~~~~~~~~~~~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      +|+.|++.++  ||.....-.+   -+.. -+..+-.+++++|.|+|.++|++||+.
T Consensus        29 ~~~~~~~~~~--Ha~m~~rvva---l~p~-e~~~~s~~~~~~G~~lF~~~Ca~CH~~   79 (180)
T PRK13622         29 AGFAWGLAPA--FAARDIPAVA---LSPT-ESITFTEAQLAKGKKLFNRACAQCHVG   79 (180)
T ss_pred             hhhhccCCch--hhccccceec---cCcc-ccccCCHHHHHHHHHHHHhhhHHhccC
Confidence            5666766655  5443222111   1111 134567888999999999999999975

>CHL00133 psbV photosystem II cytochrome c550; Validated

Probab=97.19  E-value=0.0003  Score=62.69  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=39.9

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS   67 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS   67 (305)
                      +.|.+-.......+++..|-.-++..+++.+|.++|.+.|++||.
T Consensus        24 ~~a~~~~~~~~~v~~~~~g~~~~~t~~~~~~Gk~lF~~~CaaCH~   68 (163)
T CHL00133         24 ALAIELDEATRTVVLDSSGKTVVLTPEQVKRGKRLFNASCGACHV   68 (163)
T ss_pred             hhHhhccccceeeeeCCCCCeEeeCHHHHHHHHHHHHhhHHHhCC
Confidence            666777778888999999887889999999999999999999996

>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A

Probab=97.18  E-value=0.00051  Score=50.67  Aligned_cols=21  Identities=33%  Similarity=0.797  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHhhccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlk   69 (305)
                      |++++|.++|.++|++||+..
T Consensus         1 a~~~~G~~ly~~~C~~CH~~~   21 (67)
T PF13442_consen    1 ADAAKGKALYEQNCASCHGPG   21 (67)
T ss_dssp             -HHHHHHHHHHHHTHHHHGTG
T ss_pred             CcHHHHHHHHHhHhHHhcCCC
Confidence            578999999999999999943

...

>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues

Probab=97.14  E-value=0.00025  Score=52.45  Aligned_cols=20  Identities=45%  Similarity=0.806  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHhhcccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlky   70 (305)
                      .+||.+||.+.|++||++.-
T Consensus         1 a~~G~~l~~~~C~~CH~~~~   20 (91)
T PF00034_consen    1 AARGKELFQANCAACHGADG   20 (91)
T ss_dssp             HHHHHHHHHHHTTTTHBTST
T ss_pred             ChhHHHHHhCcChhcCCCCC
Confidence            47999999889999999754

The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....

>PRK13619 psbV cytochrome c-550; Provisional

Probab=97.13  E-value=0.00039  Score=61.79  Aligned_cols=46  Identities=17%  Similarity=0.389  Sum_probs=41.6

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      +.|.+-...+...+++..|-.-++..+++.+|.|+|.+.|++||..
T Consensus        23 a~a~eld~~~~tv~~~~~G~t~~~s~~d~~~GkklF~~~Ca~CH~g   68 (160)
T PRK13619         23 ANALELDEATRTIPLNEAGETTTLTSKQITNGQRLFVQECTQCHLQ   68 (160)
T ss_pred             hhHhhccccceeeeeCCCCCeEEeCHHHHHHHHHHHHHHHHHcccC
Confidence            6677777788889999999888899999999999999999999996

>PRK13617 psbV cytochrome c-550; Provisional

Probab=97.09  E-value=0.00043  Score=62.09  Aligned_cols=46  Identities=24%  Similarity=0.492  Sum_probs=40.1

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      |.|.+-...+...+++..|-.-++..+++.+|.++|.+.|++||..
T Consensus        31 A~A~~ld~~~~tv~~~~~g~~~~~s~~~~~~G~~~F~~~C~~CH~~   76 (170)
T PRK13617         31 AQAAQWDAETLTVPADPSGSQVTFSESEIKAGRKVFNTSCGTCHAG   76 (170)
T ss_pred             hhhhhccccceeeecCCCCCeEEeCHHHHHHHHHHHHcchhhhccC
Confidence            5566666777889999999888899999999999999999999964

>PRK13618 psbV cytochrome c-550; Provisional

Probab=96.97  E-value=0.0007  Score=60.32  Aligned_cols=45  Identities=18%  Similarity=0.449  Sum_probs=34.5

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS   67 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS   67 (305)
                      +.|.+-.......+.+..|-.-++..+++++|.++|.+.|++||.
T Consensus        24 a~A~~~d~~t~Tv~~~~~g~tv~~s~~~~~~G~~lF~~~Ca~CH~   68 (163)
T PRK13618         24 ATAAELDEATRTVPLNAQGKTVTLSLKQVKEGKRLFNYACAQCHA   68 (163)
T ss_pred             HHHhhcccccceeccCCCCCeeecChhhHHHHHHHHHHHHHHhcC
Confidence            334433344456778777766678999999999999999999995

>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic

Probab=96.86  E-value=0.00064  Score=58.34  Aligned_cols=25  Identities=20%  Similarity=0.616  Sum_probs=22.3

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      -|.+++++|.++|.++|++||+.+-
T Consensus        39 ~~~~~~a~G~~ly~~~CAaCHG~~g   63 (133)
T TIGR03872        39 EDAEALKKGESLFATACSGCHGHLA   63 (133)
T ss_pred             CCHHHHHHHHHHHHHhhHHhCCCCC
Confidence            4788999999999999999999744

This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.

>PRK13621 psbV cytochrome c-550; Provisional

Probab=96.71  E-value=0.0008  Score=60.37  Aligned_cols=39  Identities=21%  Similarity=0.530  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        30 ~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      ..+...+++..|-.-+|..+++.+|.|+|.++|++||-.
T Consensus        45 ~~~~~v~~~~~g~~~~~s~~d~~~G~~lF~~~Ca~CH~g   83 (170)
T PRK13621         45 TEPVELPLDAAGETQTFSPEQLTDGKQLFDSNCLNCHVG   83 (170)
T ss_pred             CCceEeeeCCCCCeEEeCHHHHHhHHHHHHHHHHHhccC
Confidence            457778899998888899999999999999999999954

>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related

Probab=96.68  E-value=0.0022  Score=56.15  Aligned_cols=26  Identities=27%  Similarity=0.611  Sum_probs=21.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhcccccccc
Q psy10277         44 DSFDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        44 ~~~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +..|..++. |+++|..+|++||+..-
T Consensus        27 ~~~d~~~~~-G~~lY~~~CAaCHG~dG   52 (143)
T TIGR03874        27 GTVDWFTYS-GYRRYHSECHVCHGPDG   52 (143)
T ss_pred             Ccccccccc-HHHHHHHHHHHhCCCCC
Confidence            356777776 99999999999999643

This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.

>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional

Probab=96.59  E-value=0.0074  Score=56.14  Aligned_cols=24  Identities=17%  Similarity=0.205  Sum_probs=19.5

Q ss_pred             CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277        132 GAYPPDLSYITMARHGAEDYVFHLLT  157 (305)
Q Consensus       132 Ga~PPDLSliaraR~~G~dyIYs~L~  157 (305)
                      +..=|||+.+..-+  ..+|++..|.
T Consensus       101 ~RtGPDLt~vG~R~--s~~w~~~hl~  124 (217)
T PRK14487        101 KRTGPDLARVGGRY--SDEWHRNHLI  124 (217)
T ss_pred             CCCCcchhhhhccC--CHHHHHHHHh
Confidence            56779999998533  6799999998

>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2

Probab=96.54  E-value=0.0013  Score=58.34  Aligned_cols=39  Identities=23%  Similarity=0.543  Sum_probs=34.7

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        30 ~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      ..|-..+++..|-.-+|..+++.+|.++|.++|++||..
T Consensus        34 ~~~~~~~~~~~g~~~~~s~~d~~~G~~lF~~~Ca~CH~g   72 (155)
T TIGR03046        34 TGPVELPLDAQGELKTFTPEQLTDGKNLFESNCLNCHVG   72 (155)
T ss_pred             CCceEeecCCCCCeEEeCHHHHHhHHHHHHHHHHHhccC
Confidence            356678899999888899999999999999999999974

Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=96.47  E-value=0.01  Score=56.18  Aligned_cols=21  Identities=24%  Similarity=0.653  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHhhccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlk   69 (305)
                      ..+++|.++|.++|++||+..
T Consensus       105 ~a~~~G~~lf~~~Ca~CHG~~  125 (285)
T TIGR00782       105 YARNAGAAIFRTWCAQCHGSG  125 (285)
T ss_pred             HHHHHHHHHHHHHhHHhCCCC
Confidence            356899999999999999963

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>PTZ00048 cytochrome c; Provisional

Probab=96.27  E-value=0.0018  Score=54.07  Aligned_cols=22  Identities=27%  Similarity=0.730  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +.++||.++|++.|++||++.-
T Consensus        13 ~~~~~G~~~f~~~C~~CH~~~~   34 (115)
T PTZ00048         13 GDAKKGAKLFKAKCAQCHTINK   34 (115)
T ss_pred             ccHHHHHHHHHhhhhhcCCCcC
Confidence            3577999999999999999753

>PRK13620 psbV cytochrome c-550; Provisional

Probab=96.10  E-value=0.0052  Score=56.88  Aligned_cols=45  Identities=20%  Similarity=0.415  Sum_probs=39.0

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS   67 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS   67 (305)
                      |.|.+-...+...+.+..|-.-++..+++.+|.++|.+.|++||.
T Consensus        76 a~A~~ld~~trtv~ln~~G~tvtfS~eq~~~GkqLF~~~Ca~CHV  120 (215)
T PRK13620         76 AQAAELTAETRTVKLNPQGDNVTLSLKQVAEGKQLFAYACGQCHV  120 (215)
T ss_pred             hhHHHhhccceeeeeCCCCCeecCCHHHHHHHHHHHHhhhhhccC
Confidence            556666677788899999887789999999999999999999994

>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]

Probab=96.08  E-value=0.0051  Score=57.82  Aligned_cols=51  Identities=29%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             CccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcC
Q psy10277        105 MFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGY  159 (305)
Q Consensus       105 ~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f  159 (305)
                      .++-..+++|.+...++.+..++  |+++.|||+++++++|  |.+|.|+||+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~pd~~~~a~a~--~~a~~~~~~~~~  133 (250)
T COG2857          83 EFTVEDKPGDTGHMFMRPADAAD--WFGAPPPDLTLAARAN--GGAAPYDLLRQF  133 (250)
T ss_pred             cccccCCCccccccccCccchhh--hcCCCCCchhhhhhhh--cccchHHHHHHH
Confidence            34445788888888888888865  9999999999999998  889999999976

>CHL00183 petJ cytochrome c553; Provisional

Probab=95.86  E-value=0.0035  Score=50.73  Aligned_cols=19  Identities=32%  Similarity=0.878  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHhhcccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSl   68 (305)
                      .+.+|.++|.++|++||+.
T Consensus        25 ~~~~G~~ly~~~Ca~CHg~   43 (108)
T CHL00183         25 DLDNGEQIFSANCAACHAG   43 (108)
T ss_pred             cHHHHHHHHHHHHHHHCCC
Confidence            3678999999999999984

>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II

Probab=95.60  E-value=0.038  Score=51.95  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=19.9

Q ss_pred             CCCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277        131 NGAYPPDLSYITMARHGAEDYVFHLLT  157 (305)
Q Consensus       131 ~Ga~PPDLSliaraR~~G~dyIYs~L~  157 (305)
                      -+..=|||+.+..-+  ..+|++..|.
T Consensus        99 s~RtGPDLt~vG~R~--s~~wh~~hl~  123 (232)
T TIGR00781        99 SKRTGPDLARVGGRY--SDEWHVKHLF  123 (232)
T ss_pred             CCCcCcCcccccccC--CHHHHHHHHh
Confidence            367789999998644  4699999888

This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).

>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]

Probab=95.10  E-value=0.0099  Score=49.47  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.4

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+.....+|.++|.++|++||+..
T Consensus        46 ~~~~~~~~G~~~f~~~C~~CHg~~   69 (150)
T COG2010          46 APAAARGAGLALFLGNCAACHGPN   69 (150)
T ss_pred             cHHHHHHHHHHHhcccchhccCCC
Confidence            455689999999999999999986

>PRK13697 cytochrome c6; Provisional

Probab=95.10  E-value=0.0089  Score=48.13  Aligned_cols=18  Identities=33%  Similarity=0.827  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHhhcccccc
Q psy10277         51 IRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSl   68 (305)
                      .++|.++|.++|++||+.
T Consensus        28 ~~~G~~ly~~~C~~CHg~   45 (111)
T PRK13697         28 AANGEQVFSANCASCHAG   45 (111)
T ss_pred             HHHHHHHHHHHHHHhCCC
Confidence            468999999999999984

>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V

Probab=94.95  E-value=0.0093  Score=51.77  Aligned_cols=36  Identities=22%  Similarity=0.563  Sum_probs=27.6

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         33 PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        33 ~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      -..+++..|-.-++...++.||.++|.+.|+.||--
T Consensus         7 rtv~ln~~G~t~~~s~~q~~~GkrLF~~~C~~CH~G   42 (135)
T PF14495_consen    7 RTVPLNEQGETVTFSPEQLKRGKRLFNASCAQCHVG   42 (135)
T ss_dssp             TEEESSTTS-EEE--HHHHHHHHHHHHHHTHHHHGG
T ss_pred             eeeeeCCCCCEEEECHHHHHHHHHHHHHHHHhhccC
Confidence            345566667667789999999999999999999974

...

>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1

Probab=94.51  E-value=0.021  Score=51.25  Aligned_cols=25  Identities=28%  Similarity=0.655  Sum_probs=17.7

Q ss_pred             HHHHHHHHHhhccccccccc-ccccc
Q psy10277         52 RRGYEVYKNVCAACHSARFI-CYRNL   76 (305)
Q Consensus        52 qRG~qVf~~vCaaCHSlky~-~y~~l   76 (305)
                      |.|.++..+.|++|||..+. .|.|+
T Consensus         1 q~G~~Lv~~kC~~CHs~~~~g~~sRI   26 (167)
T PF09098_consen    1 QDGEQLVQEKCAGCHSADYDGALSRI   26 (167)
T ss_dssp             --HHHHHHHCHCCTC-EECTTEETTG
T ss_pred             CcHHHHHHHHHHHhcCccccCccccc
Confidence            67999999999999998762 35543

4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.

>COG2863 Cytochrome c553 [Energy production and conversion]

Probab=94.36  E-value=0.045  Score=46.85  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHhhccccccccccccccc--CCCCCHHHHHHHHHHh
Q psy10277         48 HASIRRGYEVYKNVCAACHSARFICYRNLV--GVSHTEAEAKREAEEI   93 (305)
Q Consensus        48 ~asLqRG~qVf~~vCaaCHSlky~~y~~l~--~~g~t~~evk~~a~~~   93 (305)
                      .+++++|.+.|.+.|++||+..-.+...-.  =.|.+++++..-..+|
T Consensus        21 ~~~a~~G~~~~~~~Ca~CHG~~g~~~~~~~P~Lagq~~~yl~~~L~a~   68 (121)
T COG2863          21 AADAALGKALAAQSCAACHGADGNSPAPGYPKLAGQSEAYLEKQLKAY   68 (121)
T ss_pred             hhhHHHHHHhhcchhhhccCCCCCCccCCCCCcCCCCHHHHHHHHHHH
Confidence            457899999999999999999876622221  1377888876655555

>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional

Probab=94.10  E-value=0.031  Score=53.84  Aligned_cols=25  Identities=40%  Similarity=0.723  Sum_probs=21.8

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      .|.+++.||.++|.+.|++||+..-
T Consensus       210 ~~~~~~~~G~~ly~~~Ca~CHg~~g  234 (294)
T PRK14486        210 TDVAAIAKGKALYDANCAACHGDEA  234 (294)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4678899999999999999999643

>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III

Probab=93.51  E-value=0.036  Score=52.52  Aligned_cols=25  Identities=28%  Similarity=0.580  Sum_probs=21.1

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      .|.+.++||.++|.+.|++||+..-
T Consensus       198 ~~~~~~~~G~~lf~~~Ca~CHG~~G  222 (285)
T TIGR00782       198 KDEALAAKGQELFADNCTTCHGEDG  222 (285)
T ss_pred             cchhHHHHHHHHHhccchhhCCCCC
Confidence            4566789999999999999999643

This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.

>COG3474 Cytochrome c2 [Energy production and conversion]

Probab=91.59  E-value=0.08  Score=46.12  Aligned_cols=21  Identities=38%  Similarity=0.735  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +.+..|.+||.. |.+||++.-
T Consensus        29 ~da~~G~~vFkk-C~~CH~i~~   49 (135)
T COG3474          29 GDAAAGEKVFKK-CQACHSIEK   49 (135)
T ss_pred             ccHHHhHHHHHH-HHHhhcccc
Confidence            568899999999 999999865

>COG3258 Cytochrome c [Energy production and conversion]

Probab=89.70  E-value=0.12  Score=49.72  Aligned_cols=22  Identities=45%  Similarity=0.733  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      ++..||.++|++.|+.||+..-
T Consensus       160 adp~rG~kly~eqCa~CHg~~G  181 (293)
T COG3258         160 ADPVRGKKLYAEQCAACHGADG  181 (293)
T ss_pred             CCchhHHHHHHHHHHHhcCCCC
Confidence            5678999999999999999754

>COG4654 Cytochrome c551/c552 [Energy production and conversion]

Probab=88.14  E-value=1.1  Score=37.77  Aligned_cols=19  Identities=26%  Similarity=0.765  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHh-hcccccc
Q psy10277         50 SIRRGYEVYKNV-CAACHSA   68 (305)
Q Consensus        50 sLqRG~qVf~~v-CaaCHSl   68 (305)
                      +.++|..+|.|+ |.+||-.
T Consensus        22 ~a~~~~aif~qkgC~~CHq~   41 (110)
T COG4654          22 DAEDGKAIFSQKGCVACHQP   41 (110)
T ss_pred             chhhhHHHHHhccchhhccc
Confidence            457889999886 9999985

>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=85.31  E-value=0.54  Score=48.71  Aligned_cols=27  Identities=26%  Similarity=0.778  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHHHHHHh-hcccccccccc
Q psy10277         46 FDHASIRRGYEVYKNV-CAACHSARFIC   72 (305)
Q Consensus        46 ~D~asLqRG~qVf~~v-CaaCHSlky~~   72 (305)
                      .|..+++||.++|.+. |++||.-++..
T Consensus       358 ~~~~~v~~G~~lF~~~GCa~CH~p~~~T  385 (499)
T PF06537_consen  358 LDDPQVLRGKQLFYQIGCASCHTPSLTT  385 (499)
T ss_pred             CCcHHHHHHHHHHHhcCCcccCCCccCC
Confidence            4678899999999985 99999988744

>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []

Probab=83.64  E-value=1.5  Score=41.23  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHH-hhccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlk   69 (305)
                      +...+|.++|.. -|..|||-.
T Consensus        48 ~lel~GR~iYi~eGC~~CHSQ~   69 (226)
T PF02433_consen   48 PLELAGRDIYIREGCYYCHSQM   69 (226)
T ss_pred             HHHHhHHHHHHHcCchhccccc
Confidence            356799999966 699999953

Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.

>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG

Probab=82.65  E-value=0.56  Score=45.18  Aligned_cols=23  Identities=43%  Similarity=0.849  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHH--Hhhcccccccc
Q psy10277         48 HASIRRGYEVYK--NVCAACHSARF   70 (305)
Q Consensus        48 ~asLqRG~qVf~--~vCaaCHSlky   70 (305)
                      .++-+||+++|.  ..|++||+-..
T Consensus       156 s~~e~~G~~LF~~k~~C~~CH~g~~  180 (291)
T TIGR03791       156 GADAKRGFALFKGKAGCAACHSSWR  180 (291)
T ss_pred             CHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            467899999997  46999998643

Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
3cwb_D	241	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		1e-75
1bgy_D	241	Cytochrome Bc1 Complex From Bovine Length = 241		3e-74
1bcc_D	241	Cytochrome Bc1 Complex From Chicken Length = 241		3e-74
1ezv_D	245	Structure Of The Yeast Cytochrome Bc1 Complex Co- C		3e-64
1kb9_D	246	Yeast Cytochrome Bc1 Complex Length = 246		4e-64
1kyo_D	248	Yeast Cytochrome Bc1 Complex With Bound Substrate C		4e-64
2yiu_B	263	X-Ray Structure Of The Dimeric Cytochrome Bc1 Compl		1e-19
1zrt_D	258	Rhodobacter Capsulatus Cytochrome Bc1 Complex With		3e-19
2fyn_B	269	Crystal Structure Analysis Of The Double Mutant Rho		9e-18
2qjk_B	256	Crystal Structure Analysis Of Mutant Rhodobacter Sp		1e-17
1qcr_D	75	Crystal Structure Of Bovine Mitochondrial Cytochrom		4e-13

>pdb|3CWB|D Chain D, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 241

Iteration: 1
 Score =  279 bits (714), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 143/275 (52%), Positives = 180/275 (65%), Gaps = 36/275 (13%)
Query: 26  GDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAE 85
           G+LELHPP   WSH G L + DH+S+RRG++VYK VC+ACHS  ++ +RNL+GV+HTEAE
Sbjct: 1   GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAE 60
Query: 86  AKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMAR 145
           AK  AEE+ V+DGP+E GE+F RPGK+SD FP                   DLSYI  AR
Sbjct: 61  AKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNAR 120
Query: 146 HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQAL 205
           HG EDYVF LLTG                Y DPPAGV +REGL++NPYF G AIGMA  +
Sbjct: 121 HGGEDYVFSLLTG----------------YCDPPAGVVVREGLHYNPYFPGQAIGMAPPI 164
Query: 206 YNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXX 265
           YNEI+EY+DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +               
Sbjct: 165 YNEILEYDDGTPATMSQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLIS------------ 212
Query: 266 XXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                    +LT+ L+Y+KR+K+S LK+RK++Y+P
Sbjct: 213 --------ALLTSLLYYMKRHKWSVLKSRKMAYRP 239

>pdb|1BGY|D Chain D, Cytochrome Bc1 Complex From Bovine Length = 241

Iteration: 1
 Score =  275 bits (703), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 143/274 (52%), Positives = 174/274 (63%), Gaps = 36/274 (13%)
Query: 27  DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
           DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV +TE EA
Sbjct: 2   DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61
Query: 87  KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARH 146
           K  AEE+ V+DGPNE GEMF RPGKLSD FP                   DLSYI  ARH
Sbjct: 62  KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121
Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
           G EDYVF LL                TGY +PP GV +REGLYFNPYF G AIGMA  +Y
Sbjct: 122 GGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIY 165
Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXXX 266
           NE++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +                
Sbjct: 166 NEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM-------------- 211
Query: 267 XXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                 M +L   ++ +KR+K+S LK+RK++Y+P
Sbjct: 212 ------MGLLLPLVYAMKRHKWSVLKSRKLAYRP 239

>pdb|1BCC|D Chain D, Cytochrome Bc1 Complex From Chicken Length = 241

Iteration: 1
 Score =  275 bits (703), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 142/274 (51%), Positives = 174/274 (63%), Gaps = 36/274 (13%)
Query: 27  DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
           DLELHPP   WSH G L S DH SIRRG++VYK VC++CHS  ++ YR+LVGV +TE EA
Sbjct: 2   DLELHPPSYPWSHRGPLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61
Query: 87  KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARH 146
           K  AEE+ V+DGPNE GEMF RPGKLSD FP                   DLSYI  ARH
Sbjct: 62  KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121
Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
           G EDYVF LL                TGY +PP GV +REGLYFNPYF G AIGMA  +Y
Sbjct: 122 GGEDYVFSLL----------------TGYCEPPTGVSVREGLYFNPYFPGQAIGMAPPIY 165
Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXXX 266
           N+++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +                
Sbjct: 166 NDVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM-------------- 211
Query: 267 XXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                 M +L   ++Y+KR+K+S LK+RK++Y+P
Sbjct: 212 ------MGLLVPLVYYMKRHKWSVLKSRKLAYRP 239

>pdb|1EZV|D Chain D, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 245

Iteration: 1
 Score =  241 bits (615), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Query: 23  VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
           + A +  LH P   WSH+G  ++FDHASIRRGY+VY+ VCAACHS   + +R LVGVSHT
Sbjct: 1   MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83  EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
             E +  AEE   +D P+E+G   KRPGKLSD  P                   DLS I 
Sbjct: 61  NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
            ARHG  DY+F LLTGY D               +PPAGV +  G  +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXX 262
           + L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K +            
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVII---------- 215
Query: 263 XXXXXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                     ++ L     ++K++K++ +KTRK  + P
Sbjct: 216 ----------LSSLYLLSIWVKKFKWAGIKTRKFVFNP 243

>pdb|1KB9|D Chain D, Yeast Cytochrome Bc1 Complex Length = 246

Iteration: 1
 Score =  241 bits (615), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Query: 23  VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
           + A +  LH P   WSH+G  ++FDHASIRRGY+VY+ VCAACHS   + +R LVGVSHT
Sbjct: 1   MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83  EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
             E +  AEE   +D P+E+G   KRPGKLSD  P                   DLS I 
Sbjct: 61  NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
            ARHG  DY+F LLTGY D               +PPAGV +  G  +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXX 262
           + L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K +            
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVII---------- 215
Query: 263 XXXXXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                     ++ L     ++K++K++ +KTRK  + P
Sbjct: 216 ----------LSSLYLLSIWVKKFKWAGIKTRKFVFNP 243

>pdb|1KYO|D Chain D, Yeast Cytochrome Bc1 Complex With Bound Substrate Cytochrome C Length = 248

Iteration: 1
 Score =  241 bits (614), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/278 (43%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Query: 23  VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
           + A +  LH P   WSH+G  ++FDHASIRRGY+VY+ VCAACHS   + +R LVGVSHT
Sbjct: 1   MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83  EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
             E +  AEE   +D P+E+G   KRPGKLSD  P                   DLS I 
Sbjct: 61  NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
            ARHG  DY+F LLTGY D               +PPAGV +  G  +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXX 262
           + L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K +            
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVII---------- 215
Query: 263 XXXXXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                     ++ L     ++K++K++ +KTRK  + P
Sbjct: 216 ----------LSSLYLLSIWVKKFKWAGIKTRKFVFNP 243

>pdb|2YIU|B Chain B, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From The Soil Bacterium Paracoccus Denitrificans At 2.7 Angstrom Resolution Length = 263

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 24  QAGD--LELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---G 78
           +AGD     H   + +S  G    FD   ++RG +VY  VC+ACH  R++  R L    G
Sbjct: 18  EAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGG 77
Query: 79  VSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDL 138
               E + +  A    + D   E+     RP   +D FP+                  DL
Sbjct: 78  PQLPEDQVRAYAANFDITDPETEE----DRPRVPTDHFPTVSGEGMGP----------DL 123
Query: 139 SYITMARHGAEDYVFH---------LLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLY 189
           S +  AR G     FH         L  G   P   +Y+  +LTGY D     +    LY
Sbjct: 124 SLMAKARAG-----FHGPYGTGLSQLFNGIGGP---EYIHAVLTGY-DGEEKEEAGAVLY 174
Query: 190 FNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAI 247
            N  F G  I MA  L ++ + YEDGTPAT  Q+A DV+ FL W  EP+   RK++  
Sbjct: 175 HNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGF 232

>pdb|1ZRT|D Chain D, Rhodobacter Capsulatus Cytochrome Bc1 Complex With Stigmatellin Bound Length = 258

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 36/242 (14%)
Query: 33  PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEE 92
           P   +S  G+   +D A +RRG++VY  VC+ACH  +F+  R L      + +     E 
Sbjct: 5   PDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREY 64
Query: 93  IMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARHG----A 148
               D   +K    +R  K +D FP+                  DLS +  AR G    A
Sbjct: 65  AAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGP----------DLSVMAKARAGFSGPA 114
Query: 149 EDYVFHLLTGYMDPPAGDYVFHLLTGYM-DPPAGVQIREGLYFNPYFLGGAIG------- 200
              +  L  G   P   +Y+++ + G+  +P    +  +G Y+N  F  G +        
Sbjct: 115 GSGMNQLFKGMGGP---EYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAA 171
Query: 201 -----------MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKC 249
                      M   L ++ + YEDGTPAT  Q+A+DVS FL W  EP+   RK+M +  
Sbjct: 172 GVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVA 231
Query: 250 MT 251
           M 
Sbjct: 232 MV 233

>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant Rhodobacter Sphaeroides Bc1 Complex Length = 269

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 120/293 (40%), Gaps = 66/293 (22%)
Query: 31  HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEAK 87
           H   + +S  G   +FD   ++RG +VY  VCAACH  +F+  R+L    G    E + +
Sbjct: 5   HVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVR 64
Query: 88  REAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARHG 147
             A +  V D   E GE   R GK +D FP                   DLS +  AR G
Sbjct: 65  AYATQFTVTD--EETGE--DREGKPTDHFPH-----------SALENAPDLSLMAKARAG 109
Query: 148 AED----YVFHLLTGYMDPPAGDYVFHLLTGY-MDPPAGVQIRE--GLYFNPYFLGGA-- 198
                   +  L  G   P   +Y++ +LTG+  +PP   +  E  G Y+N  F  G+  
Sbjct: 110 FHGPMGTGISQLFNGIGGP---EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVP 166
Query: 199 ----------------IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
                           I M   L ++++EY DG  A+   +A+DVS FL W  EP+   R
Sbjct: 167 DTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMAR 226
Query: 243 KRMAIKCMTTXXXXXXXXXXXXXXXXXXXXMTILTAALFYLKRYKFSSLKTRK 295
           K+     +                      +T+L+  L+   +  ++ +K +K
Sbjct: 227 KQAGFTAVM--------------------FLTVLSVLLYLTNKRLWAGVKGKK 259

>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter Sphaeroides Bc1 With Stigmatellin And Antimycin Length = 256

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 106/248 (42%), Gaps = 46/248 (18%)
Query: 31  HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEAK 87
           H   + +S  G   +FD   ++RG +VY  VCAACH  +F+  R+L    G    E + +
Sbjct: 5   HVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVR 64
Query: 88  REAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARHG 147
             A +  V D   E GE   R GK +D FP                   DLS +  AR G
Sbjct: 65  AYATQFTVTD--EETGE--DREGKPTDHFPH-----------SALENAPDLSLMAKARAG 109
Query: 148 AED----YVFHLLTGYMDPPAGDYVFHLLTGY-MDPPAGVQIRE--GLYFNPYFLGGA-- 198
                   +  L  G   P   +Y++ +LTG+  +PP   +  E  G Y+N  F  G+  
Sbjct: 110 FHGPMGTGISQLFNGIGGP---EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVP 166
Query: 199 ----------------IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
                           I M   L ++++EY DG  A+   +A+DVS FL W  EP+   R
Sbjct: 167 DTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMAR 226
Query: 243 KRMAIKCM 250
           K+     +
Sbjct: 227 KQAGFTAV 234

>pdb|1QCR|D Chain D, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 75

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 20/93 (21%)
Query: 208 EIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXXXX 267
           E++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K +                 
Sbjct: 1   EVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM--------------- 45
Query: 268 XXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
                M +L   ++ +KR+K+S LK+RK++Y+P
Sbjct: 46  -----MGLLLPLVYAMKRHKWSVLKSRKLAYRP 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3cx5_D	248	Cytochrome C1, heme protein, mitochondrial; comple	1e-87
1pp9_D	241	Cytochrome C-1, cytochrome C1, heme protein, mitoc	7e-83
1zrt_D	258	Cytochrome C1; cytochrome BC1, membrane protein, h	5e-77
2qjy_B	269	Cytochrome C1; cytochrome B, 8 TM helixces cytochr	3e-76
2yiu_B	263	Cytochrome C1, heme protein; oxidoreductase; HET:	5e-70
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D* Length = 248

 Score =  261 bits (668), Expect = 1e-87
 Identities = 138/281 (49%), Positives = 178/281 (63%), Gaps = 35/281 (12%)

Query: 23  VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
           + A +  LH P   WSH+G  ++FDHASIRRGY+VY+ VCAACHS   + +R LVGVSHT
Sbjct: 1   MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60

Query: 83  EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYIT 142
             E +  AEE   +D P+E+G   KRPGKLSD  P PYPNE+AARAAN GA PPDLS I 
Sbjct: 61  NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120

Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
            ARHG  DY+F LLTGY D               +PPAGV +  G  +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165

Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGA 262
           + L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K              
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLK-------------- 211

Query: 263 LLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303
                  V +++ L     ++K++K++ +KTRK  + P   
Sbjct: 212 ------TVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKP 246

>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ... Length = 241

 Score =  249 bits (636), Expect = 7e-83
 Identities = 159/274 (58%), Positives = 191/274 (69%), Gaps = 36/274 (13%)

Query: 27  DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
           DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV +TE EA
Sbjct: 2   DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61

Query: 87  KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH 146
           K  AEE+ V+DGPNE GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSYI  ARH
Sbjct: 62  KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121

Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
           G E                DYVF LLTGY +PP GV +REGLYFNPYF G AIGMA  +Y
Sbjct: 122 GGE----------------DYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIY 165

Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA 266
           NE++E++DGTPAT SQ+AKDV TFL+W  EPEHD RKRM +K                  
Sbjct: 166 NEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLK------------------ 207

Query: 267 LQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
              + +M +L   ++ +KR+K+S LK+RK++Y+P
Sbjct: 208 --MLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRP 239

>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus} Length = 258

 Score =  234 bits (599), Expect = 5e-77
 Identities = 65/291 (22%), Positives = 112/291 (38%), Gaps = 62/291 (21%)

Query: 31  HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREA 90
           + P   +S  G+   +D A +RRG++VY  VC+ACH  +F+  R L      + +     
Sbjct: 3   NVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVR 62

Query: 91  EEIMVEDGPNEKGEMFKRPGKLSDT--------FPSPYPNEEAARAANNGAYPPDLSYIT 142
           E     D   +K    +R  K +D                   ARA  +G     ++ + 
Sbjct: 63  EYAAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGPDLSVMAKARAGFSGPAGSGMNQLF 122

Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYF-------- 194
               G  +Y+++ + G+ +               +P    +  +G Y+N  F        
Sbjct: 123 KGMGGP-EYIYNYVIGFEE---------------NPECAPEGIDGYYYNKTFQIGGVPDT 166

Query: 195 ----------LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKR 244
                      G    M   L ++ + YEDGTPAT  Q+A+DVS FL W  EP+   RK+
Sbjct: 167 CKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQ 226

Query: 245 MAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295
           M +                     A+ ++ +L+  L+   +  ++  K  K
Sbjct: 227 MGLV--------------------AMVMLGLLSVMLYLTNKRLWAPYKGHK 257

>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B* Length = 269

 Score =  233 bits (595), Expect = 3e-76
 Identities = 64/282 (22%), Positives = 109/282 (38%), Gaps = 32/282 (11%)

Query: 30  LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEA 86
            H   + +S  G   +FD   ++RG +VY  VCAACH  +F+  R+L    G    E + 
Sbjct: 4   GHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQV 63

Query: 87  KREAEEIMVEDGPNE---KGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITM 143
           +  A +  V D       +G+        +            ARA  +G     +S +  
Sbjct: 64  RAYATQFTVTDEETGEDREGKPTDHFPHSALENAPDLSLMAKARAGFHGPMGTGISQLFN 123

Query: 144 ARHGAEDYVFHLLTGYMDPPAGDYVFHLLTG-----YMDPPAGVQIREGLYFNPYFLGGA 198
              G  +Y++ +LTG+ + P      H   G          +     +         G  
Sbjct: 124 GIGGP-EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSW 182

Query: 199 IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAG 258
           I M   L ++++EY DG  A+   +A+DVS FL W  EP+   RK+              
Sbjct: 183 IAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFT---------- 232

Query: 259 GAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
                     AV  +T+L+  L+   +  ++ +K +K +   
Sbjct: 233 ----------AVMFLTVLSVLLYLTNKRLWAGVKGKKKTNVH 264

>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans} Length = 263

 Score =  217 bits (553), Expect = 5e-70
 Identities = 76/296 (25%), Positives = 112/296 (37%), Gaps = 53/296 (17%)

Query: 11  AGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARF 70
            G    A  +          H   + +S  G    FD   ++RG +VY  VC+ACH  R+
Sbjct: 7   PGTTAPAGAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRY 66

Query: 71  ICYRNLV---GVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFP--------SP 119
           +  R L    G    E + +  A    + D   E+     RP   +D FP          
Sbjct: 67  VPLRTLADEGGPQLPEDQVRAYAANFDITDPETEED----RPRVPTDHFPTVSGEGMGPD 122

Query: 120 YPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPP 179
                 ARA  +G Y   LS +     G  +Y+  +LTGY                 D  
Sbjct: 123 LSLMAKARAGFHGPYGTGLSQLFNGIGGP-EYIHAVLTGY-----------------DGE 164

Query: 180 AGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEH 239
              +    LY N  F G  I MA  L ++ + YEDGTPAT  Q+A DV+ FL W  EP+ 
Sbjct: 165 EKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKM 224

Query: 240 DTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295
             RK++                       +V  + +L A L+   +  +  +K  +
Sbjct: 225 MDRKQVGFV--------------------SVIFLIVLAALLYLTNKKLWQPIKHPR 260

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 89/274 (32%)

Query: 23  VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
            +  DL    P    + +    S    SIR G   + N            ++      H 
Sbjct: 313 CRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDN------------WK------HV 350

Query: 83  EAEAKREAEEIMVED-GPNEKGEMFKRPGKLSDTFP----------------SPYPNEE- 124
             +      E  +    P E  +MF    +LS  FP                    +   
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD---RLS-VFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 125 ----------AARAANNGAYP-PDLSYITMARHGAEDYVFH--LLTGY----------MD 161
                       +         P + Y+ +      +Y  H  ++  Y          + 
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 162 PPAGD-YVFHLLTGY----MDPPAGVQIREGLYFNPYFLGGAI----------GMAQALY 206
           PP  D Y +  + G+    ++ P  + +   ++ +  FL   I          G      
Sbjct: 466 PPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 207 NEIIEYE----DGTPATQSQLAKDVSTFLKWCGE 236
            ++  Y+    D  P    +L   +  FL    E
Sbjct: 525 QQLKFYKPYICDNDP-KYERLVNAILDFLPKIEE 557

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
1pp9_D	241	Cytochrome C-1, cytochrome C1, heme protein, mitoc	100.0
3cx5_D	248	Cytochrome C1, heme protein, mitochondrial; comple	100.0
2qjy_B	269	Cytochrome C1; cytochrome B, 8 TM helixces cytochr	100.0
1zrt_D	258	Cytochrome C1; cytochrome BC1, membrane protein, h	100.0
2yiu_B	263	Cytochrome C1, heme protein; oxidoreductase; HET:	100.0
3o0r_C	146	Nitric oxide reductase subunit C; oxidoreductase,	98.18
1ycc_A	108	Cytochrome C; electron transport (cytochrome); HET	98.1
1w2l_A	99	Cytochrome oxidase subunit II; cytochrome C domain	98.07
2w9k_A	114	Cytochrome C, cytochrome C555; electron transport,	98.03
2l4d_A	110	SCO1/SENC family protein/cytochrome C; electron tr	98.01
1hro_A	106	Cytochrome C2; electron transport, photosynthesis,	97.94
2c1d_B	137	SOXX; sulfur oxidation, cytochrome-C-type, oxidore	97.91
2zxy_A	87	Cytochrome C552, cytochrome C555; heme protein, ox	97.91
3mk7_B	203	Cytochrome C oxidase, CBB3-type, subunit O; TM hel	97.87
1h32_B	138	Cytochrome C, SOXX; electron transfer, sulfur cycl	97.84
3ph2_B	86	Cytochrome C6; photosynthesis, cytochrome F, photo	97.8
1ccr_A	112	Cytochrome C; electron transport(cytochrome); HET:	97.74
1c75_A	71	Cytochrome C-553; heme, bacillus pasteurii, AB ini	97.69
1co6_A	107	Protein (cytochrome C2); electron transport(heme p	97.67
1cch_A	82	Cytochrome C551; electron transport; HET: HEM; NMR	97.62
1qn2_A	100	Cytochrome CH; electron transport; HET: HEC; 2.01A	97.59
2blf_B	81	SORB, sulfite\:cytochrome C oxidoreductase subunit	97.58
2exv_A	82	Cytochrome C-551; alpha helix, heme C, electron tr	97.52
155c_A	135	Cytochrome C550; electron transport; HET: HEM; 2.5	97.5
3cp5_A	124	Cytochrome C; electron transfer protein, electron	97.48
1w5c_T	163	Cytochrome C-550; photosynthesis, water oxidation,	97.37
1ls9_A	91	Cytochrome C6; omega loop, antiparallel beta-sheet	97.36
1f1c_A	129	Cytochrome C549; dimeric cytochrome, electron tran	97.2
3m97_X	140	Cytochrome C-552, cytochrome C552; electron transp	97.1
1wve_C	80	4-cresol dehydrogenase [hydroxylating] cytochrome	97.09
1gdv_A	85	Cytochrome C6; RED ALGA, electron transport; HET:	97.04
3dr0_A	93	Cytochrome C6; photosynthesis, cyanobacteria, elec	97.02
3a9f_A	92	Cytochrome C; alpha helix, mono heme, electron tra	96.93
1a56_A	81	C-551, ferricytochrome C-552; hemoprotein, prokary	96.93
1f1f_A	89	Cytochrome C6; heme, protein structure, cyanobacte	96.92
3dmi_A	88	Cytochrome C6; electron transport, transit peptide	96.88
1i54_A	103	Cytochrome C; zinc-porphyrin, mixed-metal, electro	96.87
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	96.87
1mz4_A	137	Cytochrome C550; PSII associated cytochrome, elect	96.85
2ce0_A	105	Cytochrome C6; chloroplast, electron transport, he	96.8
3cu4_A	85	Cytochrome C family protein; monoheme cytochrome,	96.77
1cyi_A	90	Cytochrome C6, cytochrome C553; photosynthesis, el	96.77
1c6r_A	89	Cytochrome C6; electron transport protein, reduced	96.72
3dp5_A	99	OMCF, cytochrome C family protein; C-type cytochro	96.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	96.68
1e29_A	135	Cytochrome C549; electron transport, PSII associat	96.57
2zon_G	87	Cytochrome C551; nitrite, electron transfer, denit	96.52
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	96.5
1kx2_A	81	Mono-heme C-type cytochrome SCYA; HAEM protein, fe	96.3
2gc4_D	147	Cytochrome C-L; electron transfer, methylamine deh	96.3
1jdl_A	121	C552, cytochrome C2, ISO-2; alpha helix, electron	96.15
2yev_B	337	Cytochrome C oxidase subunit 2; electron transport	95.04
3oa8_B	208	SOXX; cytochrome, sulfur oxidation pathway, heme-b	95.97
2c8s_A	172	Cytochrome C-L; HAEM, heme, electron transport, me	95.94
1cno_A	87	Cytochrome C552; electron transport, pseudomonas n	95.85
2d0w_A	170	Cytochrome CL; electron transfer, electron transpo	95.84
1cc5_A	83	Cytochrome C5; electron transport (heme protein);	95.8
3c2c_A	112	Cytochrome C2; electron transport protein (cytochr	95.8
2bh4_X	134	Cytochrome C-550; C-type cytochrome, heme, electro	95.77
1c53_A	79	Cytochrome C553; electron transport; HET: HEM; 1.8	95.69
1ayg_A	80	Cytochrome C-552; electron transport, porphyrin, f	95.68
2zzs_A	103	Cytochrome C554; C-type cytochrome, electron trans	95.36
3mk7_C	311	Cytochrome C oxidase, CBB3-type, subunit P; TM hel	95.23
1vyd_A	116	Cytochrome C2; electron transport, redox, mutant;	95.17
2xts_B	205	Cytochrome; oxidoreductase-electron transport comp	95.13
1cxc_A	124	Cytochrome C2; electron transport (cytochrome); HE	95.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.1
1c2n_A	137	Cytochrome C2; electron transport; HET: HEC; NMR {	95.08
2zoo_A	442	Probable nitrite reductase; electron transfer, ele	94.94
1pby_A	489	Quinohemoprotein amine dehydrogenase 60 kDa subuni	94.78
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	94.73
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	94.45
1i8o_A	114	Cytochrome C2; electron transport, heme, ammonia,	94.44
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	94.23
1c52_A	131	Cytochrome-C552; electron transport protein, MAD,	94.19
1h1o_A	183	Cytochrome C-552; electron transport, electron tra	94.01
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	93.68
1gks_A	78	Cytochrome C551; halophilic purple phototrophic ba	93.56
2d0s_A	79	Cytochrome C, cytochrome C552; heme protein, elect	93.48
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	93.08
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	92.18
1zzh_A	328	Cytochrome C peroxidase; heme groups, oxidoreducta	92.11
2vhd_A	323	Cytochrome C551 peroxidase; iron, heme, transport,	92.08
2c1v_A	338	DI-HAEM cytochrome C peroxidase; electron transpor	92.03
1iqc_A	308	DI-heme peroxidase; proteobacteria, B subdivision,	91.99
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	91.49
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	91.4
3o5c_A	320	Cytochrome C551 peroxidase; diheme cytochrome, hyd	90.67
3hq9_A	345	Cytochrome C551 peroxidase; oxidoreductase; HET: H	89.89
4aan_A	341	Cytochrome C551 peroxidase; oxidoreductase, multih	88.46
1m70_A	190	Cytochrome C4; electron transport, diheme protein;	86.4
1e8e_A	124	Cytochrome C''; oxidoreductase(cytochrome), ligand	85.31
1dw0_A	112	Cytochrome C; asparagine ligation, oxygen binding,	85.3
2c1d_A	264	SOXA; sulfur oxidation, cytochrome-C-type, oxidore	84.49
1jmx_A	494	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	84.32
3sjl_A	373	Methylamine utilization protein MAUG; MAUG, C-heme	83.69
1h32_A	261	SOXA, diheme cytochrome C; electron transfer, sulf	82.33
3oa8_A	275	SOXA; cytochrome, sulfur oxidation pathway, heme-b	81.79
3vrd_A	174	FCCA subunit, flavocytochrome C heme subunit; sulf	81.35
1nml_A	326	DI-HAEM cytochrome C peroxidase; oxidoreductase, e	80.64

>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...

Probab=100.00  E-value=1.6e-94  Score=664.04  Aligned_cols=240  Identities=66%  Similarity=1.162  Sum_probs=234.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCc
Q psy10277         27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMF  106 (305)
Q Consensus        27 ~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~  106 (305)
                      +...||++++|+|+|+++++|++|||||+|||+|||++|||++|++||+|.|+|+||+|+|++|++++|.|+|||+|+||
T Consensus         2 ~~~~~~~~~~w~~~g~~~~~D~~slqRG~qvy~~~CaaCHSl~y~~~r~l~~~g~te~evk~~a~~~~v~d~p~~~g~~f   81 (241)
T 1pp9_D            2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMF   81 (241)
T ss_dssp             CCCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHHTSEEEECCCTTSCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCcchHHHhhhHHHHHHhhhhccCccccccccccccCCCHHHHHHHHHhcccCCCcccccccc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCC
Q psy10277        107 KRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIRE  186 (305)
Q Consensus       107 ~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~  186 (305)
                      +|+++++|+|++||+|++|||++|||+.|||||+|+|||++|+||||||||                ||.|||.|+++++
T Consensus        82 ~r~~k~~D~~~~p~~n~~Aa~~an~Ga~PPDLSliaraR~gG~dyIyslL~----------------Gy~dpp~G~~~~~  145 (241)
T 1pp9_D           82 MRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLT----------------GYCEPPTGVSLRE  145 (241)
T ss_dssp             EEECCTTSBCCCSSSSHHHHHHHTTTCCCCCCSSTTTSSTTHHHHHHHHHT----------------CCCCCCTTCCCCT
T ss_pred             cCCccHhhhcccCCChHHHHHHHhCCCCCCchHHHHHHhcCCHHHHHHHHh----------------CCCCCCCccccCC
Confidence            999999999999999999999999999999999999999999999999999                5668999999999


Q ss_pred             CcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHH
Q psy10277        187 GLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA  266 (305)
Q Consensus       187 g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~  266 (305)
                      |+|||+||||+.|+||+||++++|+|+||||+|++|+++||||||+|+|||++++||+||++|                 
T Consensus       146 G~~~N~~Fpg~~iaMP~~L~~~~v~y~dGtp~~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~v-----------------  208 (241)
T 1pp9_D          146 GLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKM-----------------  208 (241)
T ss_dssp             TCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-----------------
T ss_pred             cccccccCCCCcccccccccccceecCCCCccchHHHHHHHHHHHHHhcCchHHHHHHHHHHH-----------------
Confidence            999999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCC
Q psy10277        267 LQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSS  302 (305)
Q Consensus       267 ~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~  302 (305)
                         |+||+||++++|++||++||+||+|||+|+|++
T Consensus       209 ---l~fL~il~~l~y~~kr~~W~~vk~~~~~~~~~~  241 (241)
T 1pp9_D          209 ---LLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK  241 (241)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred             ---HHHHHHHHHHHHHHHHHHhhhcccCceecCCCC
Confidence               999999999999999999999999999999863

>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*

Probab=100.00  E-value=9.2e-95  Score=667.87  Aligned_cols=243  Identities=56%  Similarity=1.013  Sum_probs=236.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCc
Q psy10277         27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMF  106 (305)
Q Consensus        27 ~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~  106 (305)
                      +...||++++|+|+|+++++|++|||||+|||+|||++|||++|+|||||.|+|+||+|+|++|++++|.|+|||+|+||
T Consensus         5 ~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~~CaaCHsl~~v~yr~l~~~g~te~evk~~a~~~~v~d~~~~~g~~~   84 (248)
T 3cx5_D            5 EHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPK   84 (248)
T ss_dssp             HHCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTSEEECCCCTTCCCC
T ss_pred             ccCCCCCCCCCCCCCCCCCcchHhHhhhHHHHHHhhhhccCcccccccccccCCCCHHHHHHHHHhhccCCCcccccCcc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCC
Q psy10277        107 KRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIRE  186 (305)
Q Consensus       107 ~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~  186 (305)
                      +|+++++|.|++||+|++||+++|||+.|||||+|+|||++|+|||||||+||               |.|||.|+++++
T Consensus        85 ~r~g~~~D~~~~p~~n~~Aa~aan~Ga~PPDLSliaraR~gG~dyIyslL~Gy---------------~~dpp~g~~~~~  149 (248)
T 3cx5_D           85 KRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGY---------------PDEPPAGVALPP  149 (248)
T ss_dssp             EEECCTTSBCCCSCSSHHHHHHTTTTCCCCCCSSTTTSSTTHHHHHHHHHHCC---------------CSSCCTTCCCCT
T ss_pred             cCCCchhhccccCCChHHHHHHHhCCCCCCchHHHHHHHcCChHHHHHHHhcc---------------ccCCccccccCC
Confidence            99999999999999999999999999999999999999999999999999965               456899999999


Q ss_pred             CcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHH
Q psy10277        187 GLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA  266 (305)
Q Consensus       187 g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~  266 (305)
                      |.+||+||||+.|+||+||++++|+|+||||+|++|+++||||||+|+|||++++||+||+||                 
T Consensus       150 G~~yN~~fpg~~iaMP~~L~~~~v~~~dGtpa~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~v-----------------  212 (248)
T 3cx5_D          150 GSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKT-----------------  212 (248)
T ss_dssp             TCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-----------------
T ss_pred             CccccccCCCCCcCCCccccccceecCCCCccchHHHHHHHHHHHHHHcCchHHHHHHHHHHH-----------------
Confidence            999999999999999999999999999999999999999999999999999999999999999                 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCCCC
Q psy10277        267 LQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSKD  304 (305)
Q Consensus       267 ~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~~~  304 (305)
                         |+||+||++++|++||++||+||+|||+|+|++.+
T Consensus       213 ---l~fL~il~~l~y~~kr~~W~~vk~~k~~~~~~~~~  247 (248)
T 3cx5_D          213 ---VIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKPR  247 (248)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCCSC
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhhcccCceeccCCCCC
Confidence               99999999999999999999999999999987654

>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*

Probab=100.00  E-value=1.1e-80  Score=578.97  Aligned_cols=219  Identities=34%  Similarity=0.647  Sum_probs=203.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCC---CCHHHHHHHHHHhcccCCCCcCCCC
Q psy10277         29 ELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS---HTEAEAKREAEEIMVEDGPNEKGEM  105 (305)
Q Consensus        29 ~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g---~t~~evk~~a~~~~v~dgp~~~g~~  105 (305)
                      ..||++++|||+|+|+++|++|||||+|||+|||++|||++|+|||||.|+|   +||+|+|++|++++|.| + ++|+ 
T Consensus         3 ~~~~~~~~wsf~g~f~~~D~asLqRG~qVy~evCaaCHsl~~v~yr~L~d~ggp~~te~evka~a~~~~v~d-~-~~G~-   79 (269)
T 2qjy_B            3 GGHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQFTVTD-E-ETGE-   79 (269)
T ss_dssp             CCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGTSTTTTCCCHHHHHHHGGGSEEEC-T-TTCS-
T ss_pred             CCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhccCccCCHHHHHHHHhhccccC-C-Cccc-
Confidence            4689999999999999999999999999999999999999999999999888   99999999999999998 3 4788 


Q ss_pred             ccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhc-----------------CCchhHHHhhhcCCCCCCCcch
Q psy10277        106 FKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH-----------------GAEDYVFHLLTGYMDPPAGDYV  168 (305)
Q Consensus       106 ~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~-----------------~G~dyIYs~L~~f~~~~~~~~v  168 (305)
                       +|+++++|.+|+           |||+.|||||||+|||+                 +|+||||||||           
T Consensus        80 -~r~~~~~D~~p~-----------n~Ga~PPDLSliaraR~g~~g~~~~~~~~~~~~~gG~dYIyslLt-----------  136 (269)
T 2qjy_B           80 -DREGKPTDHFPH-----------SALENAPDLSLMAKARAGFHGPMGTGISQLFNGIGGPEYIYSVLT-----------  136 (269)
T ss_dssp             -EEECCTTSBCCC-----------CSSTTSCCCSSTTTSCCCCCCSTTCSHHHHHHCCCHHHHHHHHHH-----------
T ss_pred             -ccCCCChhhhhh-----------hcCCCCCCccHHHHHhcccccccccccchhcccCCcHHHHHHHHh-----------
Confidence             799999999986           99999999999999996                 58899999999           


Q ss_pred             hhccccc-CCCCCCcc--cCCCcccCCCC------------------CCCccchhhcccccccccCCCChhhHhhhHHHH
Q psy10277        169 FHLLTGY-MDPPAGVQ--IREGLYFNPYF------------------LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDV  227 (305)
Q Consensus       169 ~~~l~GY-~dpP~G~~--~~~g~~yN~~f------------------pg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DV  227 (305)
                           || .+||.++.  +++|++||+||                  ||+.|+||+||++++|+|+||||+|++|+++||
T Consensus       137 -----Gy~~~~p~~~~g~~~~G~~~N~~f~n~~mP~~l~~~qg~~~~~G~~i~M~~pL~d~~v~y~dgtpat~~q~a~DV  211 (269)
T 2qjy_B          137 -----GFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDV  211 (269)
T ss_dssp             -----CCCSSCCGGGTTCCCTTCEEESSCCSSBCCGGGBCTTSCBCSSSEEESSCCCCCTTSSCCTTCCCCCHHHHHHHH
T ss_pred             -----cCCCCCCcccccccCCcccccccccCCCCCcchhcccCCccCCCcccccccccccccccCCCCCHHHHHHHHHHH
Confidence                 78 78888876  89999999998                  688899999999999999999999999999999


Q ss_pred             HHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEe
Q psy10277        228 STFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISY  298 (305)
Q Consensus       228 vaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~  298 (305)
                      ||||+|+|||++++||+||++|                    |+||+||++++|++||++||+||+|||+-
T Consensus       212 vaFL~waaEP~~~~Rk~lG~~V--------------------l~fL~il~~l~y~~kr~~W~~vk~~~~~~  262 (269)
T 2qjy_B          212 SAFLMWAAEPKLMARKQAGFTA--------------------VMFLTVLSVLLYLTNKRLWAGVKGKKKTN  262 (269)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHcCccHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhccccceec
Confidence            9999999999999999999999                    99999999999999999999999999874

>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}

Probab=100.00  E-value=1.6e-79  Score=568.93  Aligned_cols=215  Identities=33%  Similarity=0.631  Sum_probs=203.8

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCC---CCHHHHHHHHHHh-cccCCCCcCCCC
Q psy10277         30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS---HTEAEAKREAEEI-MVEDGPNEKGEM  105 (305)
Q Consensus        30 ~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g---~t~~evk~~a~~~-~v~dgp~~~g~~  105 (305)
                      .||++++|||+|+|+++|++|||||+|||+|||++|||++|+|||||.|+|   +||+|+|++|+++ +|.| + ++|+ 
T Consensus         2 ~~~~~~~wsf~G~~~~~D~asLqRG~qvy~evCa~CHsl~~v~yr~L~d~gg~~~te~evk~~a~~~~~v~d-~-~~G~-   78 (258)
T 1zrt_D            2 SNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREYAAGLDTIID-K-DSGE-   78 (258)
T ss_dssp             CCSCSCCCSSSSSSCCCCHHHHHHHHHHHHHTTTTTCCCTTCBGGGSSSSSSCCCCHHHHHHHHHHSCCCCC-S-SSCS-
T ss_pred             CCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhcCCchhhhHHHHhhcCCCCCCHHHHHHHHHhhccccC-C-cccc-
Confidence            489999999999999999999999999999999999999999999999888   9999999999999 9988 3 4788 


Q ss_pred             ccCCCCCCCCCCCCCCcHHHHHHHhCCCC-CCCchhHHhhhc-----------------CCchhHHHhhhcCCCCCCCcc
Q psy10277        106 FKRPGKLSDTFPSPYPNEEAARAANNGAY-PPDLSYITMARH-----------------GAEDYVFHLLTGYMDPPAGDY  167 (305)
Q Consensus       106 ~~r~~~~~D~~~sp~~n~~aA~~an~Ga~-PPDLSliaraR~-----------------~G~dyIYs~L~~f~~~~~~~~  167 (305)
                       +|+++++|.+++           |||+. |||||||+|||+                 +|+||||||||          
T Consensus        79 -~r~~~~~d~~p~-----------~~Ga~~PPDLSliaraR~g~~g~~~~~~~~~~~~~~G~dyIyslLt----------  136 (258)
T 1zrt_D           79 -ERDRKETDMFPT-----------RVGDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVI----------  136 (258)
T ss_dssp             -CCCCCTTSBCCC-----------CCSSSCCCCCTTTGGGCCCCCCSCCTTSCCCCCCCCSHHHHHHHHS----------
T ss_pred             -ccCCCChhhhhh-----------hcCCCCCCCchHHHHHhcccccccccccchhcccCCcHHHHHHHHh----------
Confidence             799999999986           99999 999999999996                 58999999999          


Q ss_pred             hhhcccccCCCCCCcc-cCCCcccCCCC------------------CCCccchhhcccccccccCCCChhhHhhhHHHHH
Q psy10277        168 VFHLLTGYMDPPAGVQ-IREGLYFNPYF------------------LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVS  228 (305)
Q Consensus       168 v~~~l~GY~dpP~G~~-~~~g~~yN~~f------------------pg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVv  228 (305)
                            ||.++|.+.. +++|++||+||                  ||+.|+||++|.+++|+|+||||+|++|+++|||
T Consensus       137 ------gy~~~p~~~~g~~~g~~~N~~f~n~~mP~~l~~~qg~~~~~G~~iaM~~~L~~~~v~y~dgtpat~~q~a~DVv  210 (258)
T 1zrt_D          137 ------GFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVS  210 (258)
T ss_dssp             ------CCCCCCTTCSSCCSSCCCCSSCCSC--CCSCC---SSSCSSCCCCSCCCSCSSCSSCCTTCCCCCHHHHHHHHH
T ss_pred             ------cCCCCCcccccCCccccccccccCCCCCcchhcccCccCCCCcccccccccccccccCCCCCHHHHHHHHHHHH
Confidence                  6667777765 89999999997                  7999999999999999999999999999999999


Q ss_pred             HHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277        229 TFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK  295 (305)
Q Consensus       229 aFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~  295 (305)
                      |||+|+|||++++||+||++|                    |+||+||++++|++||++||+||+||
T Consensus       211 ~FL~waaEP~~~~Rk~~G~~v--------------------l~fL~il~~l~y~~kr~~W~~vk~~~  257 (258)
T 1zrt_D          211 AFLMWAAEPKLVARKQMGLVA--------------------MVMLGLLSVMLYLTNKRLWAPYKGHK  257 (258)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHSTTSSSC
T ss_pred             HHHHHHcCccHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhccccC
Confidence            999999999999999999999                    99999999999999999999999987

>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}

Probab=100.00  E-value=4.7e-80  Score=573.53  Aligned_cols=224  Identities=32%  Similarity=0.576  Sum_probs=194.2

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCC---CCHHHHHHHHHHhcccCCC
Q psy10277         23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS---HTEAEAKREAEEIMVEDGP   99 (305)
Q Consensus        23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g---~t~~evk~~a~~~~v~dgp   99 (305)
                      +.+++...||++++|||+|+|+++|++|||||+|||+|||++|||++|+|||||.|.|   +||+|+|++|++++|.| +
T Consensus        19 ~~~s~~~~~~~~~~w~f~g~f~~~D~aslqRG~qVy~evCaaCHsl~~v~yr~L~d~Ggp~~te~evka~a~~~~v~d-~   97 (263)
T 2yiu_B           19 AGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDITD-P   97 (263)
T ss_dssp             -----------CCCCTTSSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGGSTTSCCCCHHHHHHHHTTSEEEC-S
T ss_pred             ccCcccCCCCCCCCCCCCCccCccchHHHHHHHHHHHHHhhccCCcccchhHhhhhccCCCCCHHHHHHHHhhccccC-C
Confidence            4456677899999999999999999999999999999999999999999999999887   99999999999999998 4


Q ss_pred             CcCCCCccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhc-----------------CCchhHHHhhhcCCCC
Q psy10277        100 NEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH-----------------GAEDYVFHLLTGYMDP  162 (305)
Q Consensus       100 ~~~g~~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~-----------------~G~dyIYs~L~~f~~~  162 (305)
                      + +|+  +|+++++|.+|+          +|+|+.|||||+|+|+|+                 +|+||||+|||     
T Consensus        98 ~-~G~--~r~~~~~D~~p~----------an~Ga~PPDLSliakaR~g~~g~~~~~f~~~~~~~gG~dYIyslLt-----  159 (263)
T 2yiu_B           98 E-TEE--DRPRVPTDHFPT----------VSGEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLT-----  159 (263)
T ss_dssp             S-SSS--EEECCTTSBCCC----------CCSTTCCCCCTTHHHHC-----------------CCHHHHHHHHHT-----
T ss_pred             c-ccc--ccCCCChHHhHH----------hhCCCCCCChHHHHHHhcccccccccccchhhcccCcHHHHHHHHh-----
Confidence            4 675  799999999988          499999999999999996                 47899999999     


Q ss_pred             CCCcchhhcccccCCCCCCcccCCCcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHH
Q psy10277        163 PAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR  242 (305)
Q Consensus       163 ~~~~~v~~~l~GY~dpP~G~~~~~g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~R  242 (305)
                                 ||.+||.+.. .+|.|||+||||+.|+||+||++++|+|+||||+|++|+++||||||+|++||++++|
T Consensus       160 -----------GY~~~p~~~~-g~~~~~N~~mPg~~iaMp~~L~d~~V~y~DGtpat~~q~a~DVvaFL~waaEP~~~~R  227 (263)
T 2yiu_B          160 -----------GYDGEEKEEA-GAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDR  227 (263)
T ss_dssp             -----------CBCSCCC------CCEEBSSSSSSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             -----------CCCCCcccCC-CCccccCCCCCCccccccccccccccccCCCCccchhHHHHHHHHHHHHhcCccHHHH
Confidence                       7778888776 6899999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeE
Q psy10277        243 KRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKIS  297 (305)
Q Consensus       243 k~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~  297 (305)
                      |+||+||                    |+||+||++++|++||++||+||+||..
T Consensus       228 k~lG~~v--------------------l~fL~il~~l~y~~kr~~W~~vk~~~~~  262 (263)
T 2yiu_B          228 KQVGFVS--------------------VIFLIVLAALLYLTNKKLWQPIKHPRKP  262 (263)
T ss_dssp             HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred             HHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence            9999999                    9999999999999999999999998853

>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}

Probab=98.18  E-value=2.9e-06  Score=69.39  Aligned_cols=23  Identities=35%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             CHHHHHHHHHHHH-Hhhccccccc
Q psy10277         47 DHASIRRGYEVYK-NVCAACHSAR   69 (305)
Q Consensus        47 D~asLqRG~qVf~-~vCaaCHSlk   69 (305)
                      ..++++||.++|. +.|++||+..
T Consensus        45 ~~~~~~~G~~l~~~~~C~~CH~~~   68 (146)
T 3o0r_C           45 MSAAVVRGKLVWEQNNCVGCHTLL   68 (146)
T ss_dssp             CCHHHHHHHHHHHHHTGGGTSEET
T ss_pred             CchHHHHHHHHHHhCCCcccCCCc
Confidence            3468999999999 5699999974

>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...

Probab=98.10  E-value=2.6e-06  Score=66.17  Aligned_cols=23  Identities=26%  Similarity=0.663  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHhhcccccccc
Q psy10277         48 HASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        48 ~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+++.+|.++|.+.|++||+..-
T Consensus         5 ~~~~~~G~~lf~~~C~~CH~~~g   27 (108)
T 1ycc_A            5 AGSAKKGATLFKTRCLQCHTVEK   27 (108)
T ss_dssp             CCCHHHHHHHHHHHTTTTCCCST
T ss_pred             cccHHHHHHHHHhhCcccCCCCC
Confidence            35689999999999999999864

>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}

Probab=98.07  E-value=6.3e-06  Score=62.22  Aligned_cols=21  Identities=29%  Similarity=0.648  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHh-hccccccc
Q psy10277         49 ASIRRGYEVYKNV-CAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~v-CaaCHSlk   69 (305)
                      +++++|.++|.+. |++||+..
T Consensus         4 ~~~~~G~~l~~~~~C~~CHg~~   25 (99)
T 1w2l_A            4 PLAELGARLYREKACFSCHSID   25 (99)
T ss_dssp             CHHHHHHHHHHHTSGGGTCCSS
T ss_pred             ccHHHHHHHHhhCChhhcCCCC
Confidence            5789999999999 99999974

>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}

Probab=98.01  E-value=2.7e-06  Score=65.52  Aligned_cols=20  Identities=25%  Similarity=0.826  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.++|.+.|++||+..
T Consensus         2 d~~~G~~lf~~~C~~CH~~~   21 (110)
T 2l4d_A            2 SFTSGEQIFRTRCSSCHTVG   21 (110)
T ss_dssp             ---CHHHHHHHHTTTTCCSS
T ss_pred             CHHHHHHHHHHhhHHhcCCC
Confidence            57899999999999999964

>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1

Probab=97.94  E-value=7.5e-06  Score=63.45  Aligned_cols=22  Identities=18%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +.++||.++|.+.|++||+..-
T Consensus         6 ~~~~~G~~lf~~~C~~CH~~~g   27 (106)
T 1hro_A            6 GDPVEGKHLFHTICITCHTDIK   27 (106)
T ss_dssp             CCHHHHHHHHTTTGGGTCCSST
T ss_pred             ccHHHHHHHHHcchhhhCCCCC
Confidence            3589999999999999999864

>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}

Probab=97.91  E-value=8.1e-06  Score=66.45  Aligned_cols=21  Identities=24%  Similarity=0.581  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHH----Hhhccccccc
Q psy10277         49 ASIRRGYEVYK----NVCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~----~vCaaCHSlk   69 (305)
                      +.++||.++|.    +.|++||+..
T Consensus        24 ~~~~~G~~lf~~~~~~~C~~CH~~~   48 (137)
T 2c1d_B           24 GNPEEGVRIMTTNALGNCVACHQIG   48 (137)
T ss_dssp             CCHHHHHHHHTCTTTTCGGGTBCCT
T ss_pred             CCHHHHHHHHhcccccChhhhcCCC
Confidence            45899999998    8999999974

>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}

Probab=97.91  E-value=2.2e-05  Score=57.58  Aligned_cols=16  Identities=31%  Similarity=0.926  Sum_probs=14.8

Q ss_pred             HHHHHHHH-hhcccccc
Q psy10277         53 RGYEVYKN-VCAACHSA   68 (305)
Q Consensus        53 RG~qVf~~-vCaaCHSl   68 (305)
                      ||.++|.+ .|++||+.
T Consensus         2 ~G~~l~~~~~C~~CHg~   18 (87)
T 2zxy_A            2 DGKAIFQQKGCGSCHQA   18 (87)
T ss_dssp             CHHHHHHHTTGGGTCCS
T ss_pred             ChHHHHhcCCchhhcCC
Confidence            79999998 89999996

>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=97.87  E-value=4.4e-05  Score=68.78  Aligned_cols=25  Identities=20%  Similarity=0.191  Sum_probs=20.7

Q ss_pred             CCCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277        131 NGAYPPDLSYITMARHGAEDYVFHLLT  157 (305)
Q Consensus       131 ~Ga~PPDLSliaraR~~G~dyIYs~L~  157 (305)
                      .|.+.|||+.+..-+  ..+|++.+|.
T Consensus       102 sgr~GPDLt~vG~R~--s~~wl~~~I~  126 (203)
T 3mk7_B          102 SKRTGPDLARVGGRY--SDDWHRAHLY  126 (203)
T ss_dssp             SBCSSCCCTTCTTTS--CHHHHHHHHH
T ss_pred             CCCCCcChhhhhccC--CHHHHHHHHh
Confidence            478899999997533  6799999888

>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*

Probab=97.84  E-value=1.4e-05  Score=65.03  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHH----hhccccccc
Q psy10277         48 HASIRRGYEVYKN----VCAACHSAR   69 (305)
Q Consensus        48 ~asLqRG~qVf~~----vCaaCHSlk   69 (305)
                      .+.+.+|.++|.+    .|++||+..
T Consensus        24 ~~~~~~G~~lf~~~~~~~C~~CH~~~   49 (138)
T 1h32_B           24 PGDPVEGRRLMTDRSVGNCIACHEVT   49 (138)
T ss_dssp             CCCHHHHHHHHHCTTTTCGGGTCCCT
T ss_pred             CCCHHHHHHHHhhccCCChhhccCCC
Confidence            3578999999997    899999974

>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*

Probab=97.80  E-value=1.4e-05  Score=58.66  Aligned_cols=20  Identities=40%  Similarity=0.866  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHhhcccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSl   68 (305)
                      +++++|.++|.+.|++||+.
T Consensus         2 ~~~~~G~~l~~~~C~~CHg~   21 (86)
T 3ph2_B            2 ADLATGAKVFSANCAACHAG   21 (86)
T ss_dssp             CCHHHHHHHHHHHTHHHHCS
T ss_pred             ccHHHHHHHHHHHhHHhCCC
Confidence            35799999999999999984

>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1

Probab=97.74  E-value=4.4e-05  Score=59.61  Aligned_cols=22  Identities=27%  Similarity=0.688  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +.+++|.++|.++|++||+..-
T Consensus        10 ~~~~~G~~lf~~~C~~CHg~~g   31 (112)
T 1ccr_A           10 GNPKAGEKIFKTKCAQCHTVDK   31 (112)
T ss_dssp             CCHHHHHHHHHHHTTTTCCCST
T ss_pred             ccHHHHHHHHHhhcHHhCCCCC
Confidence            4579999999999999999754

>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*

Probab=97.69  E-value=3.8e-05  Score=55.43  Aligned_cols=16  Identities=25%  Similarity=0.636  Sum_probs=15.0

Q ss_pred             HHHHHHHHhhcccccc
Q psy10277         53 RGYEVYKNVCAACHSA   68 (305)
Q Consensus        53 RG~qVf~~vCaaCHSl   68 (305)
                      +|.++|.+.|++||+.
T Consensus         2 ~G~~l~~~~C~~CHg~   17 (71)
T 1c75_A            2 DAEAVVQQKCISCHGG   17 (71)
T ss_dssp             CHHHHHHHHTHHHHCT
T ss_pred             cHHHHHHHHHHHHcCC
Confidence            6999999999999996

>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*

Probab=97.67  E-value=5.9e-05  Score=58.55  Aligned_cols=20  Identities=35%  Similarity=0.690  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      ++.+|.++|.+ |++||+..-
T Consensus         2 d~~~G~~lf~~-C~~CH~~~g   21 (107)
T 1co6_A            2 DAASGEQVFKQ-CLVCHSIGP   21 (107)
T ss_dssp             CHHHHHHHHHH-HHTTCCCST
T ss_pred             CHHHHHHHHHH-hHhhCCCCC
Confidence            36899999999 999999754

>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*

Probab=97.62  E-value=8.6e-05  Score=54.16  Aligned_cols=18  Identities=44%  Similarity=0.927  Sum_probs=15.7

Q ss_pred             HHHHHHHHH-hhccccccc
Q psy10277         52 RRGYEVYKN-VCAACHSAR   69 (305)
Q Consensus        52 qRG~qVf~~-vCaaCHSlk   69 (305)
                      |+|.++|.+ .|++||+..
T Consensus         1 ~~G~~l~~~~~C~~CHg~~   19 (82)
T 1cch_A            1 QDGEALFKSKPCAACHSVD   19 (82)
T ss_dssp             CCSHHHHHHSTHHHHSCSS
T ss_pred             CcHHHHHHhCCChhhcCCC
Confidence            589999997 799999964

>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=97.59  E-value=3.4e-05  Score=59.21  Aligned_cols=19  Identities=26%  Similarity=0.658  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+.||.++|.+ |++||+..
T Consensus         3 d~~~G~~l~~~-C~~CH~~~   21 (100)
T 1qn2_A            3 DAAAGEKAFAP-CKACHNFE   21 (100)
T ss_dssp             CHHHHHHHTGG-GGGTCCSS
T ss_pred             cHHHHHHHHHH-HHHhcCCC
Confidence            47899999975 99999986

>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*

Probab=97.58  E-value=3.3e-05  Score=58.79  Aligned_cols=23  Identities=43%  Similarity=0.863  Sum_probs=20.0

Q ss_pred             HHHHHHHHHhhcccccccccccc
Q psy10277         52 RRGYEVYKNVCAACHSARFICYR   74 (305)
Q Consensus        52 qRG~qVf~~vCaaCHSlky~~y~   74 (305)
                      .+|.++|.++|++||++.++...
T Consensus        19 ~~G~~l~~~~C~~CH~~~~i~~~   41 (81)
T 2blf_B           19 QPGFEAAQNNCAACHSVDYINTQ   41 (81)
T ss_dssp             STHHHHHHHHTTSSSCTHHHHTS
T ss_pred             cchHHHHHHHHHHhcCCcccccC
Confidence            57999999999999999876653

>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*

Probab=97.52  E-value=0.00016  Score=52.80  Aligned_cols=17  Identities=29%  Similarity=0.497  Sum_probs=15.0

Q ss_pred             HHHHHHH-Hhhccccccc
Q psy10277         53 RGYEVYK-NVCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~-~vCaaCHSlk   69 (305)
                      +|.++|. +.|++||+..
T Consensus         2 ~G~~l~~~~~C~~CHg~~   19 (82)
T 2exv_A            2 DPEVLAKNKGCVACHAID   19 (82)
T ss_dssp             CHHHHHHHTTGGGTCCSS
T ss_pred             cHHHHHHhCCchhhcCCC
Confidence            7999998 6899999964

>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1

Probab=97.50  E-value=5.1e-05  Score=63.16  Aligned_cols=20  Identities=25%  Similarity=0.662  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.+|.++|++ |++||++.-
T Consensus         5 d~~~G~~lF~~-CaaCH~~~~   24 (135)
T 155c_A            5 DAAKGEKEFNK-CKACHMIQA   24 (135)
T ss_dssp             CSHHHHHHHTT-TTTTEECCC
T ss_pred             CHHHHHHHHHH-HHHhcCCCC
Confidence            46899999998 999999864

>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}

Probab=97.48  E-value=0.00013  Score=57.49  Aligned_cols=24  Identities=29%  Similarity=0.707  Sum_probs=22.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      ..+.+.+++|.++|.+.|++||+.
T Consensus        28 ~~~~~~~~~G~~l~~~~C~~CH~~   51 (124)
T 3cp5_A           28 QIDAALAQQGEQLFNTYCTACHRL   51 (124)
T ss_dssp             SCCHHHHHHHHHHHHHHTTTTCCS
T ss_pred             cCChHHHHHHHHHHHHhhHHhCCC
Confidence            478999999999999999999996

>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1

Probab=97.37  E-value=1.8e-05  Score=66.48  Aligned_cols=37  Identities=16%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy10277         33 PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        33 ~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      ...+++..+..-.++.+++++|.++|.+.|++||+..
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~G~~lf~~~Ca~CHg~~   70 (163)
T 1w5c_T           34 LTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGG   70 (163)
T ss_dssp             HEEESSTTSCEEECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred             eEEecCCCCCcccCCHHHHHHHHHHHHHhhHHhCCCC
Confidence            3445555554456889999999999999999999853

>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1

Probab=97.36  E-value=6.7e-05  Score=56.09  Aligned_cols=23  Identities=35%  Similarity=0.696  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHHHHhhcccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      +|.+++++|.++|.+.|++||+.
T Consensus         1 ~~~~~~~~G~~l~~~~C~~CHg~   23 (91)
T 1ls9_A            1 VDAELLADGKKVFAGNCAACHLG   23 (91)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHGG
T ss_pred             CCHHHHHHHHHHHHHHhHHhCCC
Confidence            47889999999999999999996

>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1

Probab=97.20  E-value=8.6e-05  Score=58.79  Aligned_cols=34  Identities=24%  Similarity=0.555  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         35 LKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        35 ~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      .++...|..-.++.+.+.+|.++|.+.|++||+.
T Consensus         8 ~~l~~~g~~~~~~~~~~~~G~~lf~~~Ca~CHg~   41 (129)
T 1f1c_A            8 FPINAQGDTAVLSLKEIKKGQQVFNAACAQCHAL   41 (129)
T ss_dssp             EECSTTCCEEECCHHHHHHHHHHHHHHTHHHHGG
T ss_pred             eecccccceeccCcccHHHHHHHHHhhhHHhcCC
Confidence            3444445445678899999999999999999995

>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*

Probab=97.10  E-value=0.00045  Score=58.24  Aligned_cols=20  Identities=35%  Similarity=0.685  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHhhcccccc
Q psy10277         48 HASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        48 ~asLqRG~qVf~~vCaaCHSl   68 (305)
                      .+++.||.++| +.|++||+.
T Consensus        41 ~~d~~~G~~lf-~~C~~CH~~   60 (140)
T 3m97_X           41 SADPAAGEKVF-GKCKACHKL   60 (140)
T ss_dssp             TCCHHHHHHHG-GGTTTTCCS
T ss_pred             ccCHHHHHHHH-HhhhhhcCC
Confidence            34578999999 899999998

>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*

Probab=97.09  E-value=0.00023  Score=52.72  Aligned_cols=40  Identities=28%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHH
Q psy10277         50 SIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKRE   89 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~   89 (305)
                      ++.+|.++|.+.|++||+..--..-+|.+.+++++.+.+.
T Consensus         3 ~~~~G~~l~~~~C~~CHg~~gg~~P~L~~~~~~~~~l~~~   42 (80)
T 1wve_C            3 QWGSGKNLYDKVCGHCHKPEVGVGPVLEGRGLPEAYIKDI   42 (80)
T ss_dssp             CSSSHHHHHHHTTHHHHSTTTCSSCCCTTSCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence            3578999999999999997633344555545677777664

>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*

Probab=97.04  E-value=0.00014  Score=53.04  Aligned_cols=20  Identities=35%  Similarity=0.815  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.++|.++|++||+..
T Consensus         2 ~~~~G~~l~~~~C~~CHg~~   21 (85)
T 1gdv_A            2 DLDNGEKVFSANCAACHAGG   21 (85)
T ss_dssp             HHHHHHHHHHHHTHHHHGGG
T ss_pred             cHHHHHHHHHHhhHhhCCCC
Confidence            68999999999999999864

>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}

Probab=97.02  E-value=0.00011  Score=54.25  Aligned_cols=20  Identities=35%  Similarity=0.743  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.++|.++|++||+..
T Consensus         2 d~~~G~~l~~~~C~~CHg~~   21 (93)
T 3dr0_A            2 DAAAGAQVFAANCAACHAGG   21 (93)
T ss_dssp             CHHHHHHHHHHHTHHHHGGG
T ss_pred             cHHHHHHHHHHHhHHhcCCC
Confidence            47899999999999999863

>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}

Probab=96.93  E-value=0.00071  Score=53.59  Aligned_cols=22  Identities=14%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhhcccccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSARFIC   72 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlky~~   72 (305)
                      .+.|.++|.+.|.+|||..++.
T Consensus        27 ~~~g~~l~~~kC~~CHs~d~v~   48 (92)
T 3a9f_A           27 FDAAKKLVDVRCNKCHTLDSVA   48 (92)
T ss_dssp             HHHHHHHHHHHSSSSSCSGGGH
T ss_pred             hHhHHHHHHhHHHHhcCCcccc
Confidence            4789999999999999999863

>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*

Probab=96.93  E-value=0.00099  Score=48.79  Aligned_cols=16  Identities=38%  Similarity=0.756  Sum_probs=13.2

Q ss_pred             HHHHHH-Hhhccccccc
Q psy10277         54 GYEVYK-NVCAACHSAR   69 (305)
Q Consensus        54 G~qVf~-~vCaaCHSlk   69 (305)
                      |.++|. +.|++||+..
T Consensus         1 ~~~l~~~~~C~~CHg~~   17 (81)
T 1a56_A            1 DADLAKKNNCIACHQVE   17 (81)
T ss_dssp             CHHHHHHHSHHHHBCSS
T ss_pred             CHhHHhccCchhhCCCC
Confidence            568997 7899999964

>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*

Probab=96.92  E-value=0.00019  Score=52.90  Aligned_cols=20  Identities=35%  Similarity=0.750  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.++|.+.|++||+..
T Consensus         2 ~~~~G~~l~~~~C~~CHg~~   21 (89)
T 1f1f_A            2 DVAAGASVFSANCAACHMGG   21 (89)
T ss_dssp             CHHHHHHHHHHHTHHHHGGG
T ss_pred             cHHHHHHHHHHHhHHhCCCC
Confidence            57899999999999999975

>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1

Probab=96.88  E-value=0.00016  Score=53.21  Aligned_cols=19  Identities=32%  Similarity=0.868  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHhhcccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSl   68 (305)
                      +++||.++|.++|++||+.
T Consensus         2 d~~~G~~l~~~~C~~CHg~   20 (88)
T 3dmi_A            2 DVGAGEQIFNANCAACHAG   20 (88)
T ss_dssp             CHHHHHHHHHHHTHHHHGG
T ss_pred             cHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999993

>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...

Probab=96.87  E-value=0.00024  Score=54.15  Aligned_cols=21  Identities=24%  Similarity=0.697  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      ++++|.++|.+.|++||+..-
T Consensus         2 d~~~G~~lf~~~C~~CH~~~g   22 (103)
T 1i54_A            2 DVAKGKKTFVQKCAQCHTVEN   22 (103)
T ss_dssp             CHHHHHHHHHHHTTTTCCCST
T ss_pred             cHHHHHHHHHHhhHHhCCCCC
Confidence            478999999999999999864

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=96.87  E-value=0.0011  Score=64.95  Aligned_cols=24  Identities=21%  Similarity=0.623  Sum_probs=22.0

Q ss_pred             CCCHHHHHHHHHHHHHhhcccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      ..+.+.+++|.++|.+.|++||+.
T Consensus        30 ~~~~~~~~~G~~l~~~~Ca~CHg~   53 (543)
T 1nir_A           30 DMSESEFNEAKQIYFQRCAGCHGV   53 (543)
T ss_dssp             CCCHHHHHHHHHHHHHHTHHHHTT
T ss_pred             CCChhHHHHHHHHHhhhhHhhCCC
Confidence            458899999999999999999996

>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*

Probab=96.85  E-value=0.00039  Score=56.27  Aligned_cols=25  Identities=20%  Similarity=0.590  Sum_probs=22.4

Q ss_pred             CCCHHHHHHHHHHHHHhhccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .++.+++++|.++|.++|++||+..
T Consensus        20 ~~~~~~~~~G~~ly~~~Ca~CHg~~   44 (137)
T 1mz4_A           20 TLTEKQYLEGKRLFQYACASCHVGG   44 (137)
T ss_dssp             ECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred             cCChHHHHHHHHHHHhhhHHhcCCC
Confidence            4678899999999999999999964

>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*

Probab=96.80  E-value=0.00029  Score=53.63  Aligned_cols=22  Identities=36%  Similarity=0.767  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +++.+|.++|.++|++||+..-
T Consensus         3 ~~~~~G~~l~~~~Ca~CHg~~g   24 (105)
T 2ce0_A            3 LDIQRGATLFNRACAACHDTGG   24 (105)
T ss_dssp             CCHHHHHHHHHHHTTTTSGGGC
T ss_pred             hhHHHHHHHHHHHHHHhCCCCC
Confidence            3578999999999999999753

>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}

Probab=96.77  E-value=0.00039  Score=51.32  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHhhccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlk   69 (305)
                      +.+++|.++|.+.|++||+..
T Consensus         3 g~~~~G~~ly~~~Ca~CHg~~   23 (85)
T 3cu4_A            3 GSGAGGGELFATHCAGCHPQG   23 (85)
T ss_dssp             ----CHHHHHHHHTTTTSGGG
T ss_pred             ccHHHHHHHHHHHhHHhCCCC
Confidence            468899999999999999973

>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*

Probab=96.77  E-value=0.00024  Score=52.79  Aligned_cols=19  Identities=37%  Similarity=0.824  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHhhcccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSl   68 (305)
                      ++.+|.++|.+.|++||+.
T Consensus         2 ~~~~G~~l~~~~C~~CHg~   20 (90)
T 1cyi_A            2 DLALGAQVFNGNCAACHMG   20 (90)
T ss_dssp             CHHHHHHHHHHHTHHHHGG
T ss_pred             cHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999996

>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*

Probab=96.72  E-value=0.00027  Score=52.26  Aligned_cols=19  Identities=32%  Similarity=0.805  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhhcccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSl   68 (305)
                      ++.+|.++|.+.|++||+.
T Consensus         3 ~~~~G~~l~~~~C~~CHg~   21 (89)
T 1c6r_A            3 DLALGKQTFEANCAACHAG   21 (89)
T ss_dssp             CHHHHHHHHHHHTHHHHGG
T ss_pred             cHHHHHHHHHHHHHHHcCC
Confidence            5789999999999999996

>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0

Probab=96.72  E-value=0.00024  Score=55.05  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             CCCHHHHHHHHHHHHHhhccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      ..|.+.+.+|.++|.++|++||+..
T Consensus        13 ~~~~~~~~~G~~ly~~~Ca~CHg~~   37 (99)
T 3dp5_A           13 AETAVPNSGGGELFATHCAGCHPQG   37 (99)
T ss_dssp             GGGCCCCCCHHHHHHHHTTTTSGGG
T ss_pred             CCCcccHHHHHHHHHHHHHHhCCCC
Confidence            3466678999999999999999963

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=96.68  E-value=0.0029  Score=63.15  Aligned_cols=25  Identities=24%  Similarity=0.582  Sum_probs=22.3

Q ss_pred             CCCHHHHHHHHHHHHHhhccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      ..+.+.+++|.++|.+.|++||+..
T Consensus        48 ~~~~~~~~~G~~ly~~~Ca~CHg~~   72 (567)
T 1qks_A           48 ALSDAQYNEANKIYFERCAGCHGVL   72 (567)
T ss_dssp             CCCHHHHHHHHHHHHHHTHHHHCTT
T ss_pred             CCCHHHHHHHHHHHhhhhHhhCCCC
Confidence            3678899999999999999999963

>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1

Probab=96.57  E-value=0.00067  Score=55.71  Aligned_cols=29  Identities=17%  Similarity=0.551  Sum_probs=23.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277         39 HSGLLDSFDHASIRRGYEVYKNVCAACHS   67 (305)
Q Consensus        39 ~~g~~~~~D~asLqRG~qVf~~vCaaCHS   67 (305)
                      ..|-.-.++.+.+.+|.++|.+.|++||+
T Consensus        14 ~~g~~~~~~~~d~~~G~~lf~~~Ca~CH~   42 (135)
T 1e29_A           14 EAGGTTTLTARQFTNGQKIFVDTCTQCHL   42 (135)
T ss_dssp             SSSCEEECCHHHHHHHHHHHHHHTHHHHG
T ss_pred             CCCCccCCCcccHHHHHHHHHhHHHHhcC
Confidence            33432357889999999999999999999

>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}

Probab=96.52  E-value=0.00031  Score=52.12  Aligned_cols=21  Identities=24%  Similarity=0.654  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlk   69 (305)
                      +++++|.++|.++|++||+..
T Consensus         7 ~~~~~G~~l~~~~C~~CHg~~   27 (87)
T 2zon_G            7 QLDPAGEKLYRSACVVCHASG   27 (87)
T ss_dssp             CCCHHHHHHHHHTTHHHHTTT
T ss_pred             hhhhHHHHHHHHHhHHHcCCC
Confidence            346899999999999999975

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=96.50  E-value=0.0013  Score=61.19  Aligned_cols=22  Identities=36%  Similarity=0.801  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHhhccccccc
Q psy10277         48 HASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        48 ~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+.+++|.++|.+.|++||+..
T Consensus       219 ~~~~~~G~~lf~~~Ca~CHg~~  240 (311)
T 3mk7_C          219 DADLSAGKNVYAQTCAVCHGQG  240 (311)
T ss_dssp             CCCHHHHHHHHHHTTHHHHCTT
T ss_pred             cccchhhHHHHhhhHHhcCCCC
Confidence            3568999999999999999963

>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*

Probab=96.30  E-value=0.00044  Score=51.31  Aligned_cols=20  Identities=25%  Similarity=0.752  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.++|.+.|++||+..
T Consensus         2 ~~~~G~~ly~~~Ca~CHg~~   21 (81)
T 1kx2_A            2 DLQDAEAIYNKACTVCHSMG   21 (81)
T ss_dssp             CCSCHHHHHHHSTTSSTTTT
T ss_pred             ccccHHHHHHHHHHHHcCCC
Confidence            35689999999999999963

>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*

Probab=96.30  E-value=0.00087  Score=55.16  Aligned_cols=23  Identities=26%  Similarity=0.654  Sum_probs=20.2

Q ss_pred             CHHHHHHHHHHHHHhhccccccc
Q psy10277         47 DHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        47 D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      |.+.+.+|.++|.+.|++||+..
T Consensus        42 ~~~~~~~G~~l~~~~Ca~CHg~~   64 (147)
T 2gc4_D           42 DPEILPEAEELYAGMCSGCHGHY   64 (147)
T ss_dssp             CTTTHHHHHHHHHHHTHHHHCTT
T ss_pred             CHHHHHHHHHHHHhhcHHhCCCC
Confidence            45678999999999999999964

>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1

Probab=96.15  E-value=0.00096  Score=52.57  Aligned_cols=20  Identities=30%  Similarity=0.622  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      ++.||.++| +.|++||++.-
T Consensus         4 d~~~G~~lf-~~C~~CH~~~~   23 (121)
T 1jdl_A            4 DPAKGEAVF-KKCMACHRVGP   23 (121)
T ss_dssp             CHHHHHHHG-GGTTTTCCCST
T ss_pred             CHHHHHHHH-hhhhhhCCCCC
Confidence            578999999 79999999863

>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}

Probab=95.04  E-value=0.001  Score=63.00  Aligned_cols=19  Identities=42%  Similarity=0.889  Sum_probs=17.2

Q ss_pred             HHHHHHHHHhhcccccccc
Q psy10277         52 RRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        52 qRG~qVf~~vCaaCHSlky   70 (305)
                      ++|.++|.+.|++||+..-
T Consensus       237 ~~G~~lf~~~Ca~CHg~~g  255 (337)
T 2yev_B          237 ERGQQVFQQNCAACHGVAR  255 (337)
Confidence            8999999999999999743

>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*

Probab=95.97  E-value=0.012  Score=52.71  Aligned_cols=17  Identities=35%  Similarity=0.272  Sum_probs=13.5

Q ss_pred             hhHHHHHHHHhhhCCCc
Q psy10277        222 QLAKDVSTFLKWCGEPE  238 (305)
Q Consensus       222 Q~a~DVvaFL~w~aeP~  238 (305)
                      +.++||++||.-...|.
T Consensus       190 eEIaaLaaYL~s~~sPv  206 (208)
T 3oa8_B          190 QQIKDVVAYLFDPESPV  206 (208)
T ss_dssp             HHHHHHHHHHHCTTSGG
T ss_pred             HHHHHHHHHHHccCCCC
Confidence            44899999998877763

>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1

Probab=95.94  E-value=0.0027  Score=54.27  Aligned_cols=24  Identities=25%  Similarity=0.666  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .|.+.+.+|.++|.+.|++||+..
T Consensus        49 ~~~~~~~~G~~lf~~~Ca~CHg~~   72 (172)
T 2c8s_A           49 DDKSCLRNGESLFATSCSGCHGHL   72 (172)
T ss_dssp             TCHHHHHHHHHHHHHHTHHHHCTT
T ss_pred             CCHHHHHHHHHHHHhhhHHhCCCC
Confidence            477899999999999999999974

>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1

Probab=95.85  E-value=0.0011  Score=49.37  Aligned_cols=19  Identities=42%  Similarity=0.740  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++.+|.++|. .|++||+..
T Consensus         3 ~~~~G~~ly~-~C~~CHg~~   21 (87)
T 1cno_A            3 DIEAGKAKAA-VCAACHGQN   21 (87)
T ss_dssp             CHHHHHHHGG-GTHHHHCTT
T ss_pred             cHHHHHHHHH-HHHhhcCCC
Confidence            4789999999 999999964

>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}

Probab=95.84  E-value=0.0022  Score=54.44  Aligned_cols=23  Identities=26%  Similarity=0.660  Sum_probs=20.7

Q ss_pred             CHHHHHHHHHHHHHhhccccccc
Q psy10277         47 DHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        47 D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      |.+.+++|.++|.++|++||+..
T Consensus        44 ~~~~~~~G~~lf~~~Ca~CHg~~   66 (170)
T 2d0w_A           44 VAGCLPKGEEIYLESCSGCHGHI   66 (170)
T ss_dssp             CGGGHHHHHHHHHHHTHHHHCTT
T ss_pred             CHHHHHHHHHHHHhhhHHhCCCC
Confidence            56789999999999999999974

>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1

Probab=95.80  E-value=0.00087  Score=50.43  Aligned_cols=18  Identities=39%  Similarity=0.813  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHhhcccccc
Q psy10277         51 IRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSl   68 (305)
                      +++|.++|.++|++||+.
T Consensus         4 ~~~G~~ly~~~Ca~CHg~   21 (83)
T 1cc5_A            4 ARSGDDVVAKYCNACHGT   21 (83)
T ss_dssp             SSCSHHHHHHTTHHHHTT
T ss_pred             hHHHHHHHHHHHHHHCcC
Confidence            468999999999999996

>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*

Probab=95.80  E-value=0.0026  Score=49.64  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.+|.++|. .|++||+..-
T Consensus         3 d~~~G~~lf~-~Ca~CH~~~g   22 (112)
T 3c2c_A            3 DAAAGEKVSK-KCLACHTFDQ   22 (112)
T ss_dssp             CHHHHHHHGG-GGTTTCCCST
T ss_pred             cHHHHHHHHH-hHHhhCCCCC
Confidence            4689999998 9999999863

>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*

Probab=95.77  E-value=0.0022  Score=53.00  Aligned_cols=20  Identities=25%  Similarity=0.677  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.++|.+ |++||++..
T Consensus         4 d~~~G~~lF~~-C~~CH~v~~   23 (134)
T 2bh4_X            4 DAAKGEKEFNK-CKACHMVQA   23 (134)
T ss_dssp             CHHHHHHHGGG-TTTTCCEEC
T ss_pred             cHHHHHHHHHH-hHhhcCCcC
Confidence            47899999998 999999875

>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*

Probab=95.69  E-value=0.003  Score=46.13  Aligned_cols=16  Identities=44%  Similarity=1.039  Sum_probs=14.4

Q ss_pred             HHHHHHHHhhccccccc
Q psy10277         53 RGYEVYKNVCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlk   69 (305)
                      +|.++|.+ |++||+..
T Consensus         2 ~G~~ly~~-Ca~CHg~~   17 (79)
T 1c53_A            2 DGAALYKS-CVGCHGAD   17 (79)
T ss_pred             cHHHHHHH-HHhccCCC
Confidence            79999998 99999964

>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*

Probab=95.68  E-value=0.01  Score=43.22  Aligned_cols=14  Identities=36%  Similarity=0.826  Sum_probs=10.5

Q ss_pred             HHHH-Hhhccccccc
Q psy10277         56 EVYK-NVCAACHSAR   69 (305)
Q Consensus        56 qVf~-~vCaaCHSlk   69 (305)
                      ++|. +.|++||+..
T Consensus         3 ~l~~~~~C~~CHg~~   17 (80)
T 1ayg_A            3 QLAKQKGCMACHDLK   17 (80)
T ss_dssp             TTTTSSSSGGGCCSS
T ss_pred             hhHhhCCchhhcCCC
Confidence            4565 5799999964

>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}

Probab=95.36  E-value=0.0018  Score=49.35  Aligned_cols=19  Identities=42%  Similarity=0.681  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.++|. .|++||+..
T Consensus        23 ~~~~G~~l~~-~C~~CHg~~   41 (103)
T 2zzs_A           23 DAAAGQAKAA-VCAACHGAD   41 (103)
T ss_dssp             CHHHHHHHTT-TTHHHHCTT
T ss_pred             CHHHHHHHHH-HHHhhcCCC
Confidence            5789999999 999999864

>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}

Probab=95.23  E-value=0.0066  Score=56.30  Aligned_cols=43  Identities=23%  Similarity=0.455  Sum_probs=29.7

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccccc---cccccCC----CCCHHHHHH
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARFIC---YRNLVGV----SHTEAEAKR   88 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky~~---y~~l~~~----g~t~~evk~   88 (305)
                      .|.+.+++|.++|.++|++||+..-..   +-+|.+.    |-+.+++.+
T Consensus       127 ~~~~~~~~G~~lf~~~Ca~CHg~~g~g~~g~P~L~~~~~~~g~~~~~l~~  176 (311)
T 3mk7_C          127 QDPQAVKMGARLFANYCSICHGSDAKGSLGFPNLADQDWRWGGDAASIKT  176 (311)
T ss_dssp             TCHHHHHHHHHHHHHHTHHHHCTTSCCBTTBCCSSSSCCSSCCSHHHHHH
T ss_pred             CCHHHHHHHHHHHhhhHHHhCCCCCCCCCCCCCCCCcccccCCCHHHHHH
Confidence            356678999999999999999975432   4556543    235555544

>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*

Probab=95.17  E-value=0.0048  Score=49.78  Aligned_cols=20  Identities=25%  Similarity=0.585  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.++|. .|++||++.-
T Consensus         2 d~~~G~~~F~-~C~~CH~v~~   21 (116)
T 1vyd_A            2 DAAKGEKEFN-KCKTCHSIIA   21 (116)
T ss_dssp             CHHHHHHHGG-GTTTTCCEEC
T ss_pred             CHHHHHHHHH-cchhhCCCCC
Confidence            3689999998 7999999864

>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}

Probab=95.13  E-value=0.0032  Score=55.57  Aligned_cols=25  Identities=20%  Similarity=0.491  Sum_probs=21.6

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.+++++|.++|.+.|++||+..-
T Consensus        30 ~~~~~~~~G~~Ly~~~Ca~CHG~~G   54 (205)
T 2xts_B           30 PGSGDVATGDALFADNCASCHGDFA   54 (205)
T ss_dssp             SCEEEHHHHHHHHHHHTHHHHCTTS
T ss_pred             CChhhHHHHHHHHHhhhHHhCCCCC
Confidence            4556799999999999999999765

>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*

Probab=95.13  E-value=0.0061  Score=49.48  Aligned_cols=20  Identities=20%  Similarity=0.483  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.++|+ .|++||++..
T Consensus         4 d~~~G~~~F~-~C~~CH~v~~   23 (124)
T 1cxc_A            4 DPEAGAKAFN-QCQTCHVIVD   23 (124)
T ss_dssp             CHHHHHHHGG-GGGGTCCEEC
T ss_pred             CHHHHHHHHH-hhhhhcCCCC
Confidence            4689999995 7999999864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.10  E-value=0.014  Score=59.01  Aligned_cols=35  Identities=23%  Similarity=0.422  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccc
Q psy10277         36 KWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFIC   72 (305)
Q Consensus        36 ~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~   72 (305)
                      +|.-...  ..+.+.+++|.++|.++|++||+..-..
T Consensus       580 ~~~~~~~--~~~~~~~~~G~~l~~~~C~~CHg~~g~g  614 (677)
T 1kb0_A          580 GQLLQGV--KYDPAKVEAGTMLYVANCVFCHGVPGVD  614 (677)
T ss_dssp             CCCCCCC--CCCGGGHHHHHHHHHHHTHHHHCSTTTS
T ss_pred             CCCCCCC--CCChhhHHHHHHHHhhhhhhhCCCCCcC
Confidence            4554442  4678899999999999999999987643

>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1

Probab=95.08  E-value=0.0084  Score=49.11  Aligned_cols=20  Identities=25%  Similarity=0.585  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.++|. .|++||+..-
T Consensus        23 ~~~~G~~lf~-~C~~CH~~~~   42 (137)
T 1c2n_A           23 DAAKGEKEFN-KCKTCHSIIA   42 (137)
T ss_dssp             CHHHHHHHHH-HHTTTCCBCC
T ss_pred             ChHHHHHHHH-hHHhhCCCCC
Confidence            3689999999 8999999864

>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}

Probab=94.94  E-value=0.0073  Score=57.94  Aligned_cols=25  Identities=40%  Similarity=0.628  Sum_probs=22.0

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.+++++|.++|.++|++||+..-
T Consensus       334 ~~~~~~~~G~~ly~~~Ca~CHg~~g  358 (442)
T 2zoo_A          334 NKDEQIRFGQRVYEANCMACHQANG  358 (442)
T ss_dssp             SHHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred             ccchhhHHHHHHHHhhhHHhCCCCC
Confidence            4678899999999999999999743

>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*

Probab=94.78  E-value=0.021  Score=57.08  Aligned_cols=18  Identities=50%  Similarity=0.840  Sum_probs=16.7

Q ss_pred             HHHHHHHHhhcccccccc
Q psy10277         53 RGYEVYKNVCAACHSARF   70 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlky   70 (305)
                      .|.++|.++|++|||..+
T Consensus         2 ~GkeLv~anCasCHsad~   19 (489)
T 1pby_A            2 TGEEVLQNACAACHVQHE   19 (489)
T ss_dssp             CHHHHHHHTGGGTSCBCT
T ss_pred             ChHHHHHhhhHhhcCCCc
Confidence            489999999999999977

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=94.73  E-value=0.01  Score=49.63  Aligned_cols=24  Identities=25%  Similarity=0.682  Sum_probs=21.5

Q ss_pred             CHHHHHHHHHHHHH--------hhcccccccc
Q psy10277         47 DHASIRRGYEVYKN--------VCAACHSARF   70 (305)
Q Consensus        47 D~asLqRG~qVf~~--------vCaaCHSlky   70 (305)
                      |.+.+.+|.++|.+        .|++||+..-
T Consensus        96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g  127 (190)
T 1m70_A           96 DPALAKQGEKLFRGGKLDQGMPACTGCHAPNG  127 (190)
T ss_dssp             CHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTS
T ss_pred             cccchhhHHHHHhCCCcccCCcchhhcCCCCC
Confidence            67899999999999        9999999743

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.48  E-value=0.014  Score=58.86  Aligned_cols=26  Identities=19%  Similarity=0.567  Sum_probs=23.3

Q ss_pred             CCCHHHHHHHHHHHHHhhcccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      ..|.+.+++|.++|.++|++||+..-
T Consensus       574 ~~~~~~~~~G~~l~~~~Ca~CHg~~g  599 (668)
T 1kv9_A          574 TAAPEQVQAGKQLYGQFCSVCHGMGT  599 (668)
T ss_dssp             CCCHHHHHHHHHHHHHHTHHHHCGGG
T ss_pred             CCCHHHHHHHHHHHhhhhHhhCcCCC
Confidence            46899999999999999999999744

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=94.45  E-value=0.013  Score=59.34  Aligned_cols=26  Identities=38%  Similarity=0.701  Sum_probs=23.1

Q ss_pred             CCCHHHHHHHHHHHHHhhcccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      ..|.+.+++|.++|.++|++||+..-
T Consensus       589 ~~~~~~~~~G~~ly~~~Ca~CHg~~g  614 (689)
T 1yiq_A          589 SNDTASIEAGAKLYDGYCSQCHGIHA  614 (689)
T ss_dssp             CSCHHHHHHHHHHHHHHTHHHHCGGG
T ss_pred             CCCHHHHHHHHHHHhhhhhhhCCCCC
Confidence            36889999999999999999999753

>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*

Probab=94.44  E-value=0.014  Score=45.85  Aligned_cols=16  Identities=38%  Similarity=0.918  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHhhccccc
Q psy10277         51 IRRGYEVYKNVCAACHS   67 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHS   67 (305)
                      +.+|.++|. .|++||+
T Consensus         3 ~~~G~~lf~-~C~~CH~   18 (114)
T 1i8o_A            3 AKAGEAVFK-QCMTCHR   18 (114)
T ss_dssp             HHHHHHHHH-HHTTTCC
T ss_pred             HHHHHHHHH-hHHhhCC
Confidence            679999996 8999999

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=94.23  E-value=0.0088  Score=49.68  Aligned_cols=25  Identities=24%  Similarity=0.683  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHHHHH--------hhcccccccc
Q psy10277         46 FDHASIRRGYEVYKN--------VCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~--------vCaaCHSlky   70 (305)
                      .|.+.+.+|.++|.+        .|++||+..-
T Consensus        95 ~~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g  127 (183)
T 1h1o_A           95 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDG  127 (183)
T ss_dssp             CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTS
T ss_pred             CchhhHHhHHHHHHcCCcccCCCcchhhCCCCC
Confidence            356678999999999        9999999643

>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*

Probab=94.19  E-value=0.0087  Score=48.16  Aligned_cols=17  Identities=35%  Similarity=0.852  Sum_probs=15.0

Q ss_pred             HHHHHHHHhhcccccccc
Q psy10277         53 RGYEVYKNVCAACHSARF   70 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlky   70 (305)
                      +|.++|.+ |++||+..-
T Consensus         3 ~G~~ly~~-Ca~CHg~~g   19 (131)
T 1c52_A            3 DGAKIYAQ-CAGCHQQNG   19 (131)
T ss_dssp             CHHHHTHH-HHHHHCTTS
T ss_pred             cHHHHHHH-HHHhcCCCC
Confidence            79999999 999999643

>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4

Probab=94.01  E-value=0.0067  Score=50.43  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHHhhcccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlky   70 (305)
                      +++.||.++| +.|++||+..-
T Consensus         4 ~~~~~G~~l~-~~Ca~CHg~~g   24 (183)
T 1h1o_A            4 ADAPAPYRVS-SDCMVCHGMTG   24 (183)
T ss_dssp             --------CG-GGTHHHHCBTT
T ss_pred             ccHHHHHHHH-hHHHHhcCCCC
Confidence            5688999999 99999998764

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=93.68  E-value=0.032  Score=55.97  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=16.8

Q ss_pred             HHHHHHHHHhhcccccccc
Q psy10277         52 RRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        52 qRG~qVf~~vCaaCHSlky   70 (305)
                      +.|.++|.++|++|||..+
T Consensus         2 a~Gk~LF~~NCAaCHGaga   20 (494)
T 1jmx_A            2 EQGPSLLQNKCMGCHIPEG   20 (494)
T ss_dssp             CCHHHHHHHHHBTTBCEEE
T ss_pred             chhhHHHhhhhhhhcCCCc
Confidence            4699999999999999755

>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1

Probab=93.56  E-value=0.015  Score=42.62  Aligned_cols=18  Identities=33%  Similarity=0.863  Sum_probs=15.1

Q ss_pred             HHHHHHHH----hhcccccccc
Q psy10277         53 RGYEVYKN----VCAACHSARF   70 (305)
Q Consensus        53 RG~qVf~~----vCaaCHSlky   70 (305)
                      .|.++|.+    .|++||+..-
T Consensus         1 ~G~~ly~~g~~~~C~~CHg~~g   22 (78)
T 1gks_A            1 DGESIYINGTAPTCSSCHDRGV   22 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTTG
T ss_pred             CHHHHHhhccccchhhhCCCCC
Confidence            38899997    9999999743

>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}

Probab=93.48  E-value=0.022  Score=41.24  Aligned_cols=16  Identities=31%  Similarity=0.592  Sum_probs=13.2

Q ss_pred             HHHHHH-Hhhccccccc
Q psy10277         54 GYEVYK-NVCAACHSAR   69 (305)
Q Consensus        54 G~qVf~-~vCaaCHSlk   69 (305)
                      |.++|. +.|++||+..
T Consensus         1 ~~~l~~~~~C~~CHg~~   17 (79)
T 2d0s_A            1 DEALAKAKGCMACHAID   17 (79)
T ss_dssp             CHHHHHHTTGGGTCCSS
T ss_pred             CHhHHhcCCChhhcCCC
Confidence            578996 5899999974

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=93.08  E-value=0.055  Score=45.75  Aligned_cols=24  Identities=29%  Similarity=0.707  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .|.+.+.+|.++|...|++||+..
T Consensus        85 ~~~~~~~~g~~~~~~~Ca~CHg~~  108 (174)
T 3vrd_A           85 FDKALVAKGTKLHDKYCEKCHVES  108 (174)
T ss_dssp             CCGGGHHHHHHHHHHHTTTTSGGG
T ss_pred             cchhhhccchhhhcchhHhhcCcC
Confidence            567789999999999999999863

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=92.18  E-value=0.036  Score=50.48  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHHh-------hccccccc
Q psy10277         46 FDHASIRRGYEVYKNV-------CAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~v-------CaaCHSlk   69 (305)
                      -+.+..+||.++|...       |++||+..
T Consensus       157 ~~~~~~~~G~~lF~~~~G~~~~aCa~CHg~~  187 (264)
T 2c1d_A          157 PAAPYWEHGKEIYYTRYGQLEMSCANCHEDN  187 (264)
T ss_dssp             GGHHHHHHHHHHHHCCBTTTTBCHHHHHTTS
T ss_pred             cccHHHHHHHHHHHhhcCCCCCcccccCCCC
Confidence            4568899999999986       99999964

>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}

Probab=92.11  E-value=0.062  Score=50.74  Aligned_cols=22  Identities=32%  Similarity=0.659  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHH-hhcccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlky   70 (305)
                      ++.+||+++|.. .|++||+...
T Consensus       186 ~~~~~G~~lF~~~~Ca~CH~~~~  208 (328)
T 1zzh_A          186 ADEKAGLKLFIDTGCAACHNGIN  208 (328)
T ss_dssp             HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred             HHHHHHHHHHhcCCccccCCCcc
Confidence            578999999998 8999999654

>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*

Probab=92.08  E-value=0.063  Score=50.60  Aligned_cols=22  Identities=27%  Similarity=0.682  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHH-hhcccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlky   70 (305)
                      ++.+||+++|.+ .|++||+...
T Consensus       183 ~~~~~G~~lF~~~~Ca~CH~~~~  205 (323)
T 2vhd_A          183 AQQKKGLKAFMDSGCSACHNGIN  205 (323)
T ss_dssp             HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred             HHHHHHHHHHhcCCccccCCCcc
Confidence            577999999999 8999999654

>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*

Probab=92.03  E-value=0.064  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.603  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHH-hhcccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlky   70 (305)
                      ++.+||+++|.+ .|++||+...
T Consensus       197 ~~~~~G~~lF~~~~Ca~CH~~~~  219 (338)
T 2c1v_A          197 DQEKRGLQAFMETGCTACHYGVN  219 (338)
T ss_dssp             HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred             HHHHHHHHHHhCCCccccCCCcc
Confidence            577999999998 8999999653

>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5

Probab=91.99  E-value=0.066  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.741  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHH-hhccccccc
Q psy10277         48 HASIRRGYEVYKN-VCAACHSAR   69 (305)
Q Consensus        48 ~asLqRG~qVf~~-vCaaCHSlk   69 (305)
                      .++.+||+++|.. .|++||+..
T Consensus       168 t~~~~~G~~LF~~~gCa~CH~~~  190 (308)
T 1iqc_A          168 NQDELEGYNLFKGSGCVQCHNGP  190 (308)
T ss_dssp             CHHHHHHHHHHHHHTGGGTSCTT
T ss_pred             CHHHHHHHHHHcCCChhhcCCCc
Confidence            3678999999998 799999864

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=91.49  E-value=0.08  Score=49.89  Aligned_cols=22  Identities=32%  Similarity=0.655  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHH-hhcccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlky   70 (305)
                      ++.+||+++|.+ .|++||+...
T Consensus       183 ~~~~~G~~lF~~~gCa~CH~~~~  205 (326)
T 1nml_A          183 ESEKEGLALFMDRGCTACHSGVN  205 (326)
T ss_dssp             HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred             HHHHHHHHHHccCCccccCCCCC
Confidence            677999999997 6999999643

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=91.40  E-value=0.041  Score=50.00  Aligned_cols=24  Identities=29%  Similarity=0.672  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHH-------hhccccccc
Q psy10277         46 FDHASIRRGYEVYKN-------VCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~-------vCaaCHSlk   69 (305)
                      -+.+..+||.++|..       .|++||+-.
T Consensus       154 ~~~~~~~~G~~lF~~~~g~~~~~Ca~CHg~~  184 (261)
T 1h32_A          154 PAQSTWEKGREIYYTRYGQLDLSCASCHEQY  184 (261)
T ss_dssp             GGHHHHHHHHHHHTCCBTTTTBCHHHHHTTS
T ss_pred             cccHHHHHHHHHHHHhcCCCCCcccccCCCC
Confidence            457889999999998       599999963

>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}

Probab=90.67  E-value=0.11  Score=49.34  Aligned_cols=23  Identities=26%  Similarity=0.829  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHh-hcccccccc
Q psy10277         48 HASIRRGYEVYKNV-CAACHSARF   70 (305)
Q Consensus        48 ~asLqRG~qVf~~v-CaaCHSlky   70 (305)
                      .++.+||+++|.+. |++||+-..
T Consensus       176 t~~e~~G~~LF~~~gCa~CH~g~~  199 (320)
T 3o5c_A          176 SGDAKAGYQLFKDKGCVSCHNGPA  199 (320)
T ss_dssp             CHHHHHHHHHHHHTTGGGTSCTTT
T ss_pred             CHHHHHHHHHHccCCcccccCCcc
Confidence            45789999999887 999999644

>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*

Probab=89.89  E-value=0.14  Score=49.19  Aligned_cols=20  Identities=25%  Similarity=0.723  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHh-hcccccc
Q psy10277         49 ASIRRGYEVYKNV-CAACHSA   68 (305)
Q Consensus        49 asLqRG~qVf~~v-CaaCHSl   68 (305)
                      ++-+||+++|... |++||+-
T Consensus       205 ~~e~rG~~LF~~~~Ca~CH~g  225 (345)
T 3hq9_A          205 GKQTAGLKLFLDKGCVACHGG  225 (345)
T ss_dssp             HHHHHHHHHHHHTTGGGTSCT
T ss_pred             HHHHHHHHHHccCCcccccCC
Confidence            4678999999876 9999995

>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*

Probab=88.46  E-value=0.21  Score=47.70  Aligned_cols=22  Identities=32%  Similarity=0.712  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHh-hcccccccc
Q psy10277         49 ASIRRGYEVYKNV-CAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~v-CaaCHSlky   70 (305)
                      ++-+||+++|... |++||+-..
T Consensus       200 ~~e~rG~~LF~~~gC~~CH~g~~  222 (341)
T 4aan_A          200 STAEQGLALFLDKGCAACHSGVN  222 (341)
T ss_dssp             HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred             HHHHHHHHhcCcccCCCCCCCcc
Confidence            5678999999875 999998643

>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*

Probab=86.40  E-value=0.11  Score=43.22  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhhccccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARFI   71 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky~   71 (305)
                      ++.+|.++ .++|++||+..-.
T Consensus         3 ~~~~G~~l-~~~C~~CHg~~g~   23 (190)
T 1m70_A            3 DAEAGQGK-VAVCGACHGVDGN   23 (190)
T ss_dssp             CHHHHHTT-CGGGHHHHCTTSC
T ss_pred             chhHHHHH-HhHHHhhcCCCCC
Confidence            47899999 7899999987653

>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*

Probab=85.31  E-value=0.036  Score=46.41  Aligned_cols=26  Identities=27%  Similarity=0.634  Sum_probs=20.3

Q ss_pred             CCCHHHHHHHHHHHH----------Hhhcccccccc
Q psy10277         45 SFDHASIRRGYEVYK----------NVCAACHSARF   70 (305)
Q Consensus        45 ~~D~asLqRG~qVf~----------~vCaaCHSlky   70 (305)
                      .|+.++++||.++|.          -.|++||+...
T Consensus        22 ~F~~~~A~rGkalf~~~~~~~~g~~~sCaSCH~~~~   57 (124)
T 1e8e_A           22 MYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNP   57 (124)
T ss_dssp             TCCCCCSSSTTGGGTCCEEETTTEEECTTTTSCSCT
T ss_pred             CcchhhHHHHHHHHhccccccCCCCCcccccCCCCC
Confidence            355567899999994          47999999644

>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*

Probab=85.30  E-value=0.17  Score=41.54  Aligned_cols=21  Identities=29%  Similarity=0.748  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHH----------hhcccccccc
Q psy10277         50 SIRRGYEVYKN----------VCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~----------vCaaCHSlky   70 (305)
                      ++.||.++|.+          .|++||+...
T Consensus        21 ~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p   51 (112)
T 1dw0_A           21 DAERGRALFLSTQTGGKPDTPSCTTCHGADV   51 (112)
T ss_dssp             CHHHHHHHHHCCCSSSCTTCCSTHHHHCSST
T ss_pred             cHHHHHHHHhhhcccCCCCCCcccccCCCCc
Confidence            68899999943          7999999755

>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}

Probab=84.49  E-value=0.28  Score=44.49  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHH-------hhccccccc
Q psy10277         48 HASIRRGYEVYKN-------VCAACHSAR   69 (305)
Q Consensus        48 ~asLqRG~qVf~~-------vCaaCHSlk   69 (305)
                      ...++.|.++|.+       .|++||+..
T Consensus        59 ~~~v~~G~~LF~~~~~~~~~sCasCHG~~   87 (264)
T 2c1d_A           59 MVFVDRGLDKWNAAMGVNGESCASCHQGP   87 (264)
T ss_dssp             HHHHHHHHHHHHSCCSTTSCCHHHHHCSG
T ss_pred             HHHHHHHHHHHcCCCCCCCcChhhcCCCC
Confidence            3468999999999       999999874

>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*

Probab=84.32  E-value=0.2  Score=50.24  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhhccccccccc-ccccc
Q psy10277         51 IRRGYEVYKNVCAACHSARFI-CYRNL   76 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlky~-~y~~l   76 (305)
                      +.+|.++|.++|++||+..-. .+||+
T Consensus        89 va~G~eLF~~NCAaCHG~dGkG~qRr~  115 (494)
T 1jmx_A           89 VEQFDTQLSETCGRCHSGARVALQRRP  115 (494)
T ss_dssp             CCCCCHHHHHHHSSSSCSHHHHTEECC
T ss_pred             hhhHHHHHhhhhhhcCCcccCccccCC
Confidence            568999999999999998652 33444

>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*

Probab=83.69  E-value=0.51  Score=45.67  Aligned_cols=21  Identities=33%  Similarity=0.667  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHH-hhccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlk   69 (305)
                      ++-+||+++|.. .|++||+..
T Consensus       187 ~~e~rG~~LF~~~~C~~CH~g~  208 (373)
T 3sjl_A          187 PLEEFGYTVFITWNCRLCHMQR  208 (373)
T ss_dssp             HHHHHHHHHHHHSGGGGTSSSC
T ss_pred             HHHHHHHHHHCcCCCccccCCc
Confidence            456899999977 799999953

>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*

Probab=82.33  E-value=0.31  Score=44.22  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHH-------hhccccccc
Q psy10277         48 HASIRRGYEVYKN-------VCAACHSAR   69 (305)
Q Consensus        48 ~asLqRG~qVf~~-------vCaaCHSlk   69 (305)
                      ...++.|.++|.+       .|++||+..
T Consensus        55 ~~~v~~G~~LF~~~~~~~~~sCasCHg~~   83 (261)
T 1h32_A           55 MVFVEEARAVWDRPEGTEGKACADCHGAV   83 (261)
T ss_dssp             HHHHHHHHHHHTSCCSTTCCCHHHHHCSH
T ss_pred             HHHHHHHHHHHcCCCCCCCcChhHhCcCC
Confidence            3578999999999       999999863

>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*

Probab=81.79  E-value=0.28  Score=45.28  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             CCHHHHHHHHHHHH-------Hhhccccccc
Q psy10277         46 FDHASIRRGYEVYK-------NVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~-------~vCaaCHSlk   69 (305)
                      .|++.+.+|.++|.       ..|++||+..
T Consensus       160 ~~~~~~~~G~~lf~~r~G~~~~~Ca~CHg~~  190 (275)
T 3oa8_A          160 QEKEMYAIGEALFFRRSSINDFSCSTCHGAA  190 (275)
T ss_dssp             HHHHHHHHHHHHHHCCBTTTTBCHHHHHSSS
T ss_pred             ccHHHHHHHHHHHHhccCCCCCchHhhCCCc
Confidence            46788999999993       4799999964

>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*

Probab=81.35  E-value=0.37  Score=40.56  Aligned_cols=37  Identities=24%  Similarity=0.310  Sum_probs=22.9

Q ss_pred             HHHHHHhhccccccccc----ccccccCCCCCHHHHHHHHHHh
Q psy10277         55 YEVYKNVCAACHSARFI----CYRNLVGVSHTEAEAKREAEEI   93 (305)
Q Consensus        55 ~qVf~~vCaaCHSlky~----~y~~l~~~g~t~~evk~~a~~~   93 (305)
                      .++|.++|++||+..-.    .|-+|.  |.+++.+.+...++
T Consensus         4 g~~~a~~C~~CHg~~G~~~~~~~P~La--G~~~~~i~~~l~~~   44 (174)
T 3vrd_A            4 AEMLANNCAGCHGTRGNSAGPASPSIA--QMDPAVFVEVMEQF   44 (174)
T ss_dssp             HHHHHGGGHHHHCGGGCCCCSSSCCCT--TCCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhCCCcCCCCCCCCCCcC--CCCHHHHHHHHHHh
Confidence            46788999999987532    233442  45666665544444

>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*

Probab=80.64  E-value=0.9  Score=42.72  Aligned_cols=25  Identities=20%  Similarity=0.542  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHH---------hhcccccccc
Q psy10277         46 FDHASIRRGYEVYKN---------VCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~---------vCaaCHSlky   70 (305)
                      .+.+.++.|.++|-.         .|++||....
T Consensus        26 ~~~~~v~lGk~LF~D~~LS~~~~~sCasCH~~~~   59 (326)
T 1nml_A           26 LTQAKVELGKMEFFEPRLSSSHLISCNTCHNVGL   59 (326)
T ss_dssp             CCHHHHHHHHHHHTCGGGSTTSCCCHHHHSCTTT
T ss_pred             CCHHHHHHHHHHhcCcccccCCCccchhcCCccc
Confidence            789999999999987         5999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1ppjd1	195	a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos	3e-77
d3cx5d1	199	a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's	1e-74
d3cx5d2	47	f.23.11.1 (D:261-307) Cytochrome c1 subunit of cyt	2e-13
d1ppjd2	46	f.23.11.1 (D:196-241) Cytochrome c1 subunit of cyt	6e-13

>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  231 bits (591), Expect = 3e-77
 Identities = 138/210 (65%), Positives = 157/210 (74%), Gaps = 16/210 (7%)

Query: 27  DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
           DLELHPP   WSH GLL S DH SIRRG++VYK VC++CHS  ++ YR+LVGV +TE EA
Sbjct: 2   DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61

Query: 87  KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH 146
           K  AEE+ V+DGPNE GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSYI  ARH
Sbjct: 62  KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121

Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
           G E                DYVF LLTGY +PP GV +REGLYFNPYF G AIGMA  +Y
Sbjct: 122 GGE----------------DYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIY 165

Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
           NE++E++DGTPAT SQ+AKDV TFL+W  E
Sbjct: 166 NEVLEFDDGTPATMSQVAKDVCTFLRWAAE 195

>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 199

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  225 bits (574), Expect = 1e-74
 Identities = 121/214 (56%), Positives = 148/214 (69%), Gaps = 15/214 (7%)

Query: 23  VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
           + A +  LH P   WSH+G  ++FDHASIRRGY+VY+ VCAACHS   + +R LVGVSHT
Sbjct: 1   MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60

Query: 83  EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYIT 142
             E +  AEE   +D P+E+G   KRPGKLSD  P PYPNE+AARAAN GA PPDLS I 
Sbjct: 61  NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120

Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
            ARHG  DY+F LLTGY D               +PPAGV +  G  +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165

Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
           + L+++++EYEDGTPAT SQ+AKDV+TFL WC E
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE 199

>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 47

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
domain: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 20/64 (31%)

Query: 237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
           PEHD RKR+ +K +                     +++ L     ++K++K++ +KTRK 
Sbjct: 1   PEHDERKRLGLKTV--------------------IILSSLYLLSIWVKKFKWAGIKTRKF 40

Query: 297 SYKP 300
            + P
Sbjct: 41  VFNP 44

>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]} Length = 46

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
domain: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (146), Expect = 6e-13
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 20/64 (31%)

Query: 237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
           PEHD RKRM +K +                     +M +L   ++ +KR+K+S LK+RK+
Sbjct: 1   PEHDHRKRMGLKML--------------------LMMGLLLPLVYAMKRHKWSVLKSRKL 40

Query: 297 SYKP 300
           +Y+P
Sbjct: 41  AYRP 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d3cx5d1	199	Cytochrome bc1 domain {Baker's yeast (Saccharomyce	100.0
d1ppjd1	195	Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99	100.0
d1ppjd2	46	Cytochrome c1 subunit of cytochrome bc1 complex (U	99.6
d3cx5d2	47	Cytochrome c1 subunit of cytochrome bc1 complex (U	99.44
d1qcrd2	29	Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 99	99.31
d1lfma_	103	Mitochondrial cytochrome c {Bluefin tuna (Thunnus	98.31
d1ycca_	108	Mitochondrial cytochrome c {Baker's yeast (Sacchar	98.26
d3c2ca_	112	Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]	98.19
d1hroa_	105	Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]	98.12
d1nira1	112	N-terminal (heme c) domain of cytochrome cd1-nitri	98.1
d1qn2a_	99	Cytochrome ch {Methylobacterium extorquens [TaxId:	98.04
d1co6a_	107	Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10	98.01
d1h32b_	138	Mono-heme c-type cytochrome SoxX {Rhodovulum sulfi	98.01
d1kv9a1	104	Quinoprotein alcohol dehydrogenase, C-terminal dom	97.98
d1ql3a_	99	Cytochrome c552 {Paracoccus denitrificans [TaxId:	97.94
d1ccra_	111	Mitochondrial cytochrome c {Rice embryos (Oryza sa	97.92
d1i8oa_	114	Cytochrome c2 {Rhodopseudomonas palustris [TaxId:	97.9
d1c75a_	71	Cytochrome c6 (synonym: cytochrome c553) {Bacillus	97.9
d1c6sa_	87	Cytochrome c6 (synonym: cytochrome c553) {Cyanobac	97.89
d1kx7a_	81	Mono-heme c-type cytochrome ScyA {Shewanella putre	97.87
d1qksa1	127	N-terminal (heme c) domain of cytochrome cd1-nitri	97.79
d1cxca_	124	Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 106	97.78
d1cota_	121	Cytochrome c2 {Paracoccus denitrificans [TaxId: 26	97.75
d1kb0a1	97	Quinoprotein alcohol dehydrogenase, C-terminal dom	97.68
d1wvec1	74	p-Cresol methylhydroxylase, cytochrome c subunit {	97.63
d1vyda_	116	Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061	97.56
d1ls9a_	91	Cytochrome c6 (synonym: cytochrome c553) {Green al	97.55
d1jdla_	118	Cytochrome c2 {Rhodospirillum centenum [TaxId: 340	97.46
d351ca_	82	Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 28	97.44
d1gdva_	85	Cytochrome c6 (synonym: cytochrome c553) {Red alga	97.32
d1cora_	82	Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]	97.3
d1cyja_	90	Cytochrome c6 (synonym: cytochrome c553) {Chlamydo	97.23
d1mz4a_	131	Cytochrome c550 {Thermosynechococcus elongatus [Ta	97.18
d1f1fa_	88	Cytochrome c6 (synonym: cytochrome c553) {Arthrosp	97.1
d1e29a_	135	Photosystem II associated cytochrome c549 {Synecho	97.07
d1fcdc2	94	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	97.06
d2gc4d1	147	Cytochrome c551 {Paracoccus denitrificans [TaxId:	97.06
d1jmxa1	84	Quinohemoprotein amine dehydrogenase A chain, doma	97.01
d1ctja_	89	Cytochrome c6 (synonym: cytochrome c553) {Monoraph	96.97
d2c8sa1	149	Cytochrome c-L (MoxG) {Methylobacterium extorquens	96.88
d1f1ca_	129	Photosystem II associated cytochrome c549 {Arthros	96.86
d1cc5a_	83	Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]	96.69
d1pbya1	85	Quinohemoprotein amine dehydrogenase A chain, doma	96.58
d1ynra1	80	Cytochrome c552 {Hydrogenobacter thermophilus [Tax	96.08
d1m70a1	92	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	95.83
d1m70a2	98	Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}	95.81
d1c53a_	79	Cytochrome c6 (synonym: cytochrome c553) {Desulfov	95.75
d1a56a_	81	Cytochrome c552 {Nitrosomonas europaea [TaxId: 915	95.64
d1c52a_	131	Cytochrome c552 {Thermus thermophilus [TaxId: 274]	95.58
d1cnoa_	86	Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]	95.53
d1fcdc1	80	Flavocytochrome c sulfide dehydrogenase, FCSD, cyt	95.36
d1iqca2	158	Di-heme cytochrome c peroxidase {Nitrosomonas euro	94.21
d1nmla2	160	Di-heme cytochrome c peroxidase {Pseudomonas nauti	93.75
d1eb7a2	159	Di-heme cytochrome c peroxidase {Pseudomonas aerug	93.58
d1h1oa2	90	Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 9	93.39
d1gksa_	78	Cytochrome c551 {Ectothiorhodospira halophila [Tax	91.25

>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-76  Score=527.80  Aligned_cols=197  Identities=61%  Similarity=1.083  Sum_probs=191.4

Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCC
Q psy10277         25 AGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGE  104 (305)
Q Consensus        25 a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~  104 (305)
                      |++.++|+++++|||+|+||+||++|||||+|||+|||++||||+|+|||||.|+|++++|||++|++++|.++++++|+
T Consensus         3 ~a~~~~h~~~~~~~f~g~~g~~DkasLQRG~qvy~~~C~~CHsl~y~ryr~l~d~g~~e~~v~~~aa~~~v~~~~~~~~~   82 (199)
T d3cx5d1           3 AAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGN   82 (199)
T ss_dssp             HHHHCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTSEEECCCCTTCC
T ss_pred             ccccCCCCCCCCCCccCCccccCHHHHHHHHHHHHHHhhhcccchhhhhhhhcccccchhHHHHHHHHhcCccccccccc
Confidence            45667999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCccc
Q psy10277        105 MFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQI  184 (305)
Q Consensus       105 ~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~  184 (305)
                      ++.|+++++|.|++||+|++||+++|||+.|||||||+|+|++|+||||||||+|               |.|||.+..+
T Consensus        83 ~~~~~~k~~D~~~~~~~~~~aa~~~~~Ga~PPDLSLiaraR~gG~dyIys~L~gy---------------~~d~~~~~~~  147 (199)
T d3cx5d1          83 PKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGY---------------PDEPPAGVAL  147 (199)
T ss_dssp             CCEEECCTTSBCCCSCSSHHHHHHTTTTCCCCCCSSTTTSSTTHHHHHHHHHHCC---------------CSSCCTTCCC
T ss_pred             ccccccccccccccccchHHHHHHhcCCCCCCCcchhhhcccCCChhhHhhhhhc---------------ccCCcccccc
Confidence            9999999999999999999999999999999999999999999999999999976               5678889999


Q ss_pred             CCCcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCC
Q psy10277        185 REGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGE  236 (305)
Q Consensus       185 ~~g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~ae  236 (305)
                      ++|.|||+||||+.|+||+||++++|+|+||||+|++||++||||||+|+||
T Consensus       148 ~~~~~~N~~~~~~~iaMp~~L~~~~vey~dGt~at~~q~a~Dv~~FL~waaE  199 (199)
T d3cx5d1         148 PPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE  199 (199)
T ss_dssp             CTTCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHC
T ss_pred             cCCccccccccCceeecCCcCcCCCeeecCCChhhHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999998

>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-69  Score=483.29  Aligned_cols=194  Identities=71%  Similarity=1.245  Sum_probs=186.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCc
Q psy10277         27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMF  106 (305)
Q Consensus        27 ~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~  106 (305)
                      +.+.||++++|||+|+|++|||+|||||+|||+|||++|||++|+|||||.|+|++++|++++++.+.+.++++++|++|
T Consensus         2 ~~~~~~~~~~~~f~g~~g~~DkaSLQRGaqvf~nyC~gCHsl~y~ry~~l~d~g~~~~~~~~~a~~~~~~~~~~~~~~~~   81 (195)
T d1ppjd1           2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMF   81 (195)
T ss_dssp             CCCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBHHHHBTTTBCHHHHHHHHTTSEEEECCCTTSCCE
T ss_pred             ccccCCCCCCCCCCCCcccccHHHHHhHHHHHHHHHhhccchhhHHHHHHhccccchHHHHHHHHhhccccccccccccc
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCC
Q psy10277        107 KRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIRE  186 (305)
Q Consensus       107 ~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~  186 (305)
                      +|+++++|.|++||+++++|+++|||+.||||||++|+|.+|+|||||||++|               | ++|.+....+
T Consensus        82 ~r~~~~~d~~~~~~~~~~aa~~~~~Ga~PPDLSl~ar~R~gG~dwIYtyL~~f---------------y-~dp~~~~~~n  145 (195)
T d1ppjd1          82 MRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGY---------------C-EPPTGVSLRE  145 (195)
T ss_dssp             EEECCTTSBCCCSSSSHHHHHHTTTTCCCCCCTTTTTSSTTHHHHHHHHHTCC---------------C-CCCTTCCCCT
T ss_pred             cCccchhhcCCCCCCcHHHHHHHhccCCCCCcchhhhcccCCcHHHHHHHhcc---------------c-cCCcCccccC
Confidence            99999999999999999999999999999999999999999999999999966               4 3466667778


Q ss_pred             CcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCC
Q psy10277        187 GLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGE  236 (305)
Q Consensus       187 g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~ae  236 (305)
                      +.+||++|+++.|+||+||++++|+|+||||+|++|+++||||||+|+||
T Consensus       146 ~~~~~~~~~~~~~~m~~~l~~~~v~~~dgt~~e~dq~~~Dl~nFL~y~aE  195 (195)
T d1ppjd1         146 GLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAE  195 (195)
T ss_dssp             TCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccchhhhccCCcccCCccccCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999998

>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
domain: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.1e-16  Score=111.81  Aligned_cols=46  Identities=46%  Similarity=0.814  Sum_probs=44.8

Q ss_pred             CcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCC
Q psy10277        237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSS  302 (305)
Q Consensus       237 P~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~  302 (305)
                      ||+|+||+||++|                    ++||++|++++|+.||.+|+.||+|||+|+|++
T Consensus         1 Pe~d~RK~mG~Kv--------------------~~~l~~l~~l~yy~KR~~Ws~lKsrKi~y~ppk   46 (46)
T d1ppjd2           1 PEHDHRKRMGLKM--------------------LLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK   46 (46)
T ss_dssp             TTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred             CchHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHhhhhcccceeeeCCCC
Confidence            8999999999999                    999999999999999999999999999999974

>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
family: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
domain: Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.3e-14  Score=101.48  Aligned_cols=46  Identities=37%  Similarity=0.736  Sum_probs=44.6

Q ss_pred             CcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCC
Q psy10277        237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSS  302 (305)
Q Consensus       237 P~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~  302 (305)
                      ||+|+||+||+++                    ++.+.++++++++.||..|+.||||||+|+|++
T Consensus         1 PEhDeRK~mg~K~--------------------~~i~s~l~~~~~y~KR~kWs~lKsRKi~y~Ppk   46 (47)
T d3cx5d2           1 PEHDERKRLGLKT--------------------VIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPK   46 (47)
T ss_dssp             TTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred             CchhHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhccccccceeeeCCCC
Confidence            8999999999999                    999999999999999999999999999999874

>d1qcrd2 a.3.1.3 (D:167-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Cytochrome bc1 domain
domain: Cytochrome bc1 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=2.6e-13  Score=85.87  Aligned_cols=28  Identities=64%  Similarity=1.166  Sum_probs=27.0

Q ss_pred             ccccCCCChhhHhhhHHHHHHHHhhhCC
Q psy10277        209 IIEYEDGTPATQSQLAKDVSTFLKWCGE  236 (305)
Q Consensus       209 ~v~y~dGTpat~~Q~a~DVvaFL~w~ae  236 (305)
                      .|+|+||||+|.+|||+||++||+|+||
T Consensus         2 ~VeY~DGt~at~~q~a~DV~~FL~WaAE   29 (29)
T d1qcrd2           2 VLEFDDGTPATMSQVAKDVCTFLRWAAE   29 (29)
T ss_pred             cceeCCCCcCcHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999997

>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna (Thunnus thynnus) [TaxId: 8237]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Bluefin tuna (Thunnus thynnus) [TaxId: 8237]

Probab=98.31  E-value=6.5e-08  Score=72.51  Aligned_cols=19  Identities=26%  Similarity=0.816  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhhccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlk   69 (305)
                      +.||.++|.+.|++||++.
T Consensus         3 ~~~G~~lf~~~C~~CH~~~   21 (103)
T d1lfma_           3 VAKGKKTFVQKCAQCHTVE   21 (103)
T ss_dssp             HHHHHHHHHHHTTTTCCCS
T ss_pred             HHHHHHHHHccChhccCcc
Confidence            6899999999999999975

>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.26  E-value=2e-07  Score=73.52  Aligned_cols=25  Identities=28%  Similarity=0.709  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHHhhcccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlky   70 (305)
                      |..++++||.++|.+.|++||++..
T Consensus         3 ~~~gDa~~G~~lF~~~C~~CH~i~~   27 (108)
T d1ycca_           3 FKAGSAKKGATLFKTRCLQCHTVEK   27 (108)
T ss_dssp             CCCCCHHHHHHHHHHHTTTTCCCST
T ss_pred             cCccCHHHHHHHHHHhChhhCcCCC
Confidence            3445689999999999999999753

>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.19  E-value=3.7e-07  Score=70.01  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.++|++ |++||++.-
T Consensus         3 Da~~G~~lf~~-C~~CH~~~~   22 (112)
T d3c2ca_           3 DAAAGEKVSKK-CLACHTFDQ   22 (112)
T ss_dssp             CHHHHHHHGGG-GTTTCCCST
T ss_pred             CHHHHHHHHHH-HHHhCCCcC
Confidence            46899999975 999999754

>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId: 1071]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopila globiformis [TaxId: 1071]

Probab=98.12  E-value=7.5e-07  Score=69.69  Aligned_cols=21  Identities=19%  Similarity=0.581  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.++|++.|++||++.-
T Consensus         6 D~~~G~~lF~~~C~~CH~~~~   26 (105)
T d1hroa_           6 DPVEGKHLFHTICITCHTDIK   26 (105)
T ss_dssp             CHHHHHHHHTTTGGGTCCSST
T ss_pred             CHHHHHHHHHHhhHHhCCCCC
Confidence            367999999999999999643

>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.10  E-value=1.9e-06  Score=67.70  Aligned_cols=23  Identities=22%  Similarity=0.642  Sum_probs=21.3

Q ss_pred             CCHHHHHHHHHHHHHhhcccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      .+.++++||.++|.++|++||+.
T Consensus        26 ~~~~~~~~G~~ly~~~Ca~CHG~   48 (112)
T d1nira1          26 MSESEFNEAKQIYFQRCAGCHGV   48 (112)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHccccccc
Confidence            57889999999999999999986

>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome ch
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.04  E-value=6e-06  Score=64.15  Aligned_cols=19  Identities=26%  Similarity=0.658  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+.||.++|++ |++||++.
T Consensus         3 Da~~G~~lF~~-C~~CH~i~   21 (99)
T d1qn2a_           3 DAAAGEKAFAP-CKACHNFE   21 (99)
T ss_dssp             CHHHHHHHTGG-GGGTCCSS
T ss_pred             CHHHHHHHHHh-HHHHcCCc
Confidence            36799999976 99999985

>d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas viridis [TaxId: 1079]

Probab=98.01  E-value=2.2e-06  Score=67.59  Aligned_cols=19  Identities=37%  Similarity=0.718  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHhhcccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlky   70 (305)
                      +.+|.++|++ |++||++.-
T Consensus         3 a~~G~~~F~~-C~~CH~~~~   21 (107)
T d1co6a_           3 AASGEQVFKQ-CLVCHSIGP   21 (107)
T ss_dssp             HHHHHHHHHH-HHTTCCCST
T ss_pred             HHHHHHHHHh-ccccCccCC
Confidence            4689999975 999999853

>d1h32b_ a.3.1.1 (B:) Mono-heme c-type cytochrome SoxX {Rhodovulum sulfidophilum [TaxId: 35806]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome SoxX
species: Rhodovulum sulfidophilum [TaxId: 35806]

Probab=98.01  E-value=4.7e-06  Score=66.13  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             CCCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277        131 NGAYPPDLSYITMARHGAEDYVFHLLT  157 (305)
Q Consensus       131 ~Ga~PPDLSliaraR~~G~dyIYs~L~  157 (305)
                      .|.+-|||+-+..-+  ..+||+..|.
T Consensus        57 ~g~~gP~L~~ig~r~--~~~~l~~~i~   81 (138)
T d1h32b_          57 PGTVGPSLDGVAARY--PEAMIRGILV   81 (138)
T ss_dssp             CCSSSCCCTTHHHHS--CHHHHHHHHH
T ss_pred             cCCcCCccccccccC--CHHHHHHHHh
Confidence            477889999987644  5688888775

>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase, C-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.98  E-value=2.2e-06  Score=65.50  Aligned_cols=23  Identities=22%  Similarity=0.665  Sum_probs=21.2

Q ss_pred             CCHHHHHHHHHHHHHhhcccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      -|.+.++||.++|.++|++||+.
T Consensus        15 ~~~~~~~~G~~ly~~~Ca~CHg~   37 (104)
T d1kv9a1          15 AAPEQVQAGKQLYGQFCSVCHGM   37 (104)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHCG
T ss_pred             CCHHHHHHHHHHHHHHhhhhccC
Confidence            47889999999999999999985

>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.94  E-value=2e-06  Score=66.75  Aligned_cols=19  Identities=32%  Similarity=0.695  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ...||.++|.+ |++|||+.
T Consensus         2 D~~~G~~~f~~-C~~CHs~~   20 (99)
T d1ql3a_           2 DPAAGEKVFGK-CKACHKLD   20 (99)
T ss_dssp             CHHHHHHHGGG-TTTTCCSS
T ss_pred             CHHHHHHHHHH-HHhhCCcC
Confidence            35799999976 99999974

>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mitochondrial cytochrome c
species: Rice embryos (Oryza sativa) [TaxId: 4530]

Probab=97.92  E-value=5.8e-06  Score=64.82  Aligned_cols=20  Identities=30%  Similarity=0.803  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ...||.++|.+.|++||++.
T Consensus        10 D~~~G~~lF~~~CaaCH~i~   29 (111)
T d1ccra_          10 NPKAGEKIFKTKCAQCHTVD   29 (111)
T ss_dssp             CHHHHHHHHHHHTTTTCCCS
T ss_pred             CHHHHHHHHHhcCHhhCCcC
Confidence            36899999999999999974

>d1i8oa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas palustris [TaxId: 1076]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=97.90  E-value=1.6e-06  Score=67.31  Aligned_cols=18  Identities=39%  Similarity=0.896  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHhhccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlk   69 (305)
                      .+||.+||.+ |++||++.
T Consensus         3 a~~G~~lF~~-C~aCH~~~   20 (114)
T d1i8oa_           3 AKAGEAVFKQ-CMTCHRAD   20 (114)
T ss_dssp             HHHHHHHHHH-HTTTCCSS
T ss_pred             HHHHHHHHHH-hHHhcCCC
Confidence            5899999975 99999864

>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Bacillus pasteurii [TaxId: 1474]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Bacillus pasteurii [TaxId: 1474]

Probab=97.90  E-value=4.8e-06  Score=60.31  Aligned_cols=17  Identities=24%  Similarity=0.593  Sum_probs=15.1

Q ss_pred             HHHHHHHHhhccccccc
Q psy10277         53 RGYEVYKNVCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlk   69 (305)
                      +|.++|.+.|++||+..
T Consensus         2 ~G~~ly~~~Ca~CHg~~   18 (71)
T d1c75a_           2 DAEAVVQQKCISCHGGD   18 (71)
T ss_dssp             CHHHHHHHHTHHHHCTT
T ss_pred             CHHHHHHHHHHHhCCCc
Confidence            58999999999999863

>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Cyanobacterium (Synechococcus elongatus) [TaxId: 32046]

Probab=97.89  E-value=3.1e-06  Score=62.17  Aligned_cols=19  Identities=37%  Similarity=0.847  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHhhcccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSl   68 (305)
                      ++.+|.++|.++|++||+.
T Consensus         2 d~~~G~~ly~~~Ca~CHg~   20 (87)
T d1c6sa_           2 DLANGAKVFSGNCAACHMG   20 (87)
T ss_dssp             CHHHHHHHHTTTGGGGCTT
T ss_pred             cHHHHHHHHHHHChhhhhh
Confidence            5899999999999999985

>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella putrefaciens [TaxId: 24]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Mono-heme c-type cytochrome ScyA
species: Shewanella putrefaciens [TaxId: 24]

Probab=97.87  E-value=3e-06  Score=62.20  Aligned_cols=20  Identities=25%  Similarity=0.752  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      ++++|.+||.++|++||+..
T Consensus         2 d~~~G~~lY~~~Ca~CHg~~   21 (81)
T d1kx7a_           2 DLQDAEAIYNKACTVCHSMG   21 (81)
T ss_dssp             CCSCHHHHHHHTTTSSTTTT
T ss_pred             cHHHHHHHHHHHHHHHccCC
Confidence            57899999999999999853

>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
domain: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.79  E-value=2.5e-05  Score=62.60  Aligned_cols=24  Identities=25%  Similarity=0.591  Sum_probs=21.4

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      ...+.+++|.++|.++|++||+..
T Consensus        41 ~~~~~~~~G~~ly~~~Ca~CHg~~   64 (127)
T d1qksa1          41 LSDAQYNEANKIYFERCAGCHGVL   64 (127)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHhHHhcCCc
Confidence            467899999999999999999863

>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.78  E-value=2.7e-06  Score=66.43  Aligned_cols=20  Identities=20%  Similarity=0.483  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.+||. .|++||++.-
T Consensus         4 D~~~G~~vF~-~Ca~CH~i~~   23 (124)
T d1cxca_           4 DPEAGAKAFN-QCQTCHVIVD   23 (124)
T ss_dssp             CHHHHHHHGG-GGGGTCCEEC
T ss_pred             CHHHHHHHHH-hhHhhCCccc
Confidence            4789999995 5999999865

>d1cota_ a.3.1.1 (A:) Cytochrome c2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.75  E-value=7.4e-06  Score=64.49  Aligned_cols=20  Identities=25%  Similarity=0.662  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHhhcccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky   70 (305)
                      .+.||.+||++ |++||+++-
T Consensus         3 Da~~G~~vF~~-C~~CH~~~~   22 (121)
T d1cota_           3 DAAKGEKEFNK-CKACHMIQA   22 (121)
T ss_dssp             CHHHHHHHGGG-TTTTCCEEC
T ss_pred             CHHHHHHHHHh-CcccCccCC
Confidence            46899999965 999999865

>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase, C-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinoprotein alcohol dehydrogenase, C-terminal domain
domain: Quinoprotein alcohol dehydrogenase, C-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.68  E-value=4.5e-06  Score=63.02  Aligned_cols=24  Identities=29%  Similarity=0.675  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      +|.++++||.++|.++|++||+..
T Consensus        10 ~d~~~~~~G~~ly~~~Ca~CHG~~   33 (97)
T d1kb0a1          10 YDPAKVEAGTMLYVANCVFCHGVP   33 (97)
T ss_dssp             CCGGGHHHHHHHHHHHTHHHHCST
T ss_pred             CCHHHHHHHHHHHHHHhHHhhCCC
Confidence            689999999999999999999863

>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: p-Cresol methylhydroxylase, cytochrome c subunit
species: Pseudomonas putida [TaxId: 303]

Probab=97.63  E-value=6.3e-06  Score=60.11  Aligned_cols=41  Identities=27%  Similarity=0.351  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHH
Q psy10277         50 SIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREA   90 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a   90 (305)
                      |+++|.++|.++|++||+..--..-.|.+..+++++++...
T Consensus         2 q~~~G~~ly~~~Ca~CHg~~g~~~p~l~~~~~~~~~i~~~i   42 (74)
T d1wvec1           2 QWGSGKNLYDKVCGHCHKPEVGVGPVLEGRGLPEAYIKDIV   42 (74)
T ss_dssp             CSSSHHHHHHHTTHHHHSTTTCSSCCCTTSCCCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcccCcchhhccccchhHHHHHHHH
Confidence            56899999999999999987666666767778888887753

>d1vyda_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.56  E-value=4.5e-05  Score=59.92  Aligned_cols=19  Identities=26%  Similarity=0.651  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhhcccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlky   70 (305)
                      +.||.+||++ |++||++.-
T Consensus         3 ~a~G~~vf~~-C~~CH~i~~   21 (116)
T d1vyda_           3 AAKGEKEFNK-CKTCHSIIA   21 (116)
T ss_dssp             HHHHHHHGGG-TTTTCCEEC
T ss_pred             HHHHHHHHHH-hHHhCCCcC
Confidence            5799999965 999999864

>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Green alga (Cladophora glomerata) [TaxId: 162068]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Green alga (Cladophora glomerata) [TaxId: 162068]

Probab=97.55  E-value=1.2e-05  Score=59.04  Aligned_cols=24  Identities=33%  Similarity=0.653  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .|.+.+++|.++|.++|++||+..
T Consensus         1 vDa~~~~~G~~ly~~~Ca~CHg~~   24 (91)
T d1ls9a_           1 VDAELLADGKKVFAGNCAACHLGG   24 (91)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHhChHhhccc
Confidence            388999999999999999999854

>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c2
species: Rhodospirillum centenum [TaxId: 34018]

Probab=97.46  E-value=5e-05  Score=60.08  Aligned_cols=18  Identities=39%  Similarity=0.842  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHhhccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlk   69 (305)
                      +.||.+||++ |++||++.
T Consensus         3 ~~~G~~vF~~-C~~CH~v~   20 (118)
T d1jdla_           3 PAKGEAVFKK-CMACHRVG   20 (118)
T ss_dssp             HHHHHHHGGG-TTTTCCCS
T ss_pred             HHHHHHHHHH-HHHhCCcC
Confidence            6799999965 99999974

>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.44  E-value=9.8e-05  Score=53.65  Aligned_cols=17  Identities=35%  Similarity=0.729  Sum_probs=14.9

Q ss_pred             HHHHHHHHh-hccccccc
Q psy10277         53 RGYEVYKNV-CAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~v-CaaCHSlk   69 (305)
                      .|.++|.++ |++||+..
T Consensus         2 dg~~Lf~~~gC~~CH~~~   19 (82)
T d351ca_           2 DPEVLFKNKGCVACHAID   19 (82)
T ss_dssp             CHHHHHHHTTGGGTBCSS
T ss_pred             CHHHHHhhCCchhhcCCc
Confidence            588999998 99999963

>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red alga (Porphyra yezoensis) [TaxId: 2788]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Red alga (Porphyra yezoensis) [TaxId: 2788]

Probab=97.32  E-value=2.3e-05  Score=56.88  Aligned_cols=21  Identities=38%  Similarity=0.814  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHhhccccccc
Q psy10277         49 ASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~vCaaCHSlk   69 (305)
                      |++++|.++|.++|++||+..
T Consensus         1 Adi~~G~~ly~~~Ca~CHg~~   21 (85)
T d1gdva_           1 ADLDNGEKVFSANCAACHAGG   21 (85)
T ss_dssp             CHHHHHHHHHHHHTHHHHGGG
T ss_pred             CCHHHHHHHHHHHChHhhhcc
Confidence            468999999999999999853

>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Pseudomonas stutzeri [TaxId: 316]

Probab=97.30  E-value=0.00015  Score=52.60  Aligned_cols=17  Identities=47%  Similarity=0.950  Sum_probs=15.1

Q ss_pred             HHHHHHHHHh-hcccccc
Q psy10277         52 RRGYEVYKNV-CAACHSA   68 (305)
Q Consensus        52 qRG~qVf~~v-CaaCHSl   68 (305)
                      ++|.++|.++ |++||+.
T Consensus         1 E~Gk~l~~~~~C~~CH~~   18 (82)
T d1cora_           1 EDGEALFKSKPCAACHSI   18 (82)
T ss_dssp             CHHHHHHHHSTHHHHCCS
T ss_pred             CchHHHHhhCccHHHhCC
Confidence            4799999987 9999996

>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.23  E-value=2.4e-05  Score=57.53  Aligned_cols=20  Identities=35%  Similarity=0.767  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+++|.++|.++|++||+..
T Consensus         2 di~~G~~ly~~~Ca~CHg~~   21 (90)
T d1cyja_           2 DLALGAQVFNGNCAACHMGG   21 (90)
T ss_dssp             CHHHHHHHHHHHTHHHHGGG
T ss_pred             cHHHHHHHHHHHCHHhhccc
Confidence            58999999999999999853

>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus elongatus [TaxId: 146786]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c550
species: Thermosynechococcus elongatus [TaxId: 146786]

Probab=97.18  E-value=0.00018  Score=55.70  Aligned_cols=29  Identities=21%  Similarity=0.502  Sum_probs=23.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy10277         41 GLLDSFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        41 g~~~~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      |....++.++++||.++|.++|++||+..
T Consensus        16 g~~~~~~~~~~~~Gk~lf~~~Ca~CH~~~   44 (131)
T d1mz4a_          16 GKTITLTEKQYLEGKRLFQYACASCHVGG   44 (131)
T ss_dssp             SCEEECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred             cCcCCCCHHHHHHHHHHHHHHhHHHcCCC
Confidence            33345788999999999999999999754

>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Arthrospira maxima [TaxId: 129910]

Probab=97.10  E-value=6.3e-05  Score=54.58  Aligned_cols=19  Identities=37%  Similarity=0.781  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHhhccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlk   69 (305)
                      +.+|.++|.++|++||+..
T Consensus         2 i~~G~~ly~~~Ca~CHg~~   20 (88)
T d1f1fa_           2 VAAGASVFSANCAACHMGG   20 (88)
T ss_dssp             HHHHHHHHHHHTHHHHGGG
T ss_pred             hHHHHHHHHHHHHHhhcCc
Confidence            6799999999999999963

>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Synechocystis sp., pcc 6803 [TaxId: 1143]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=97.07  E-value=7.2e-05  Score=58.65  Aligned_cols=25  Identities=16%  Similarity=0.604  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHHHHHHhhcccccc
Q psy10277         44 DSFDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        44 ~~~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      -.+..++++||.++|...|++||+.
T Consensus        19 ~~~~~~~~~~Gk~lf~~~Ca~CH~~   43 (135)
T d1e29a_          19 TTLTARQFTNGQKIFVDTCTQCHLQ   43 (135)
T ss_dssp             EECCHHHHHHHHHHHHHHTHHHHGG
T ss_pred             cCCCHHHHHHHHHHHHHhhHHhcCC
Confidence            3577889999999999999999974

>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.06  E-value=0.00012  Score=54.44  Aligned_cols=25  Identities=32%  Similarity=0.595  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHHhhccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+|.+.++||.++|.+.|++||+..
T Consensus         4 ~~d~a~a~~G~~ly~~~Ca~CHg~~   28 (94)
T d1fcdc2           4 SFDTALADTGAKLHDKYCEKCHVEG   28 (94)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTTSHHH
T ss_pred             CccHHHHHHhHHHHHHHhHHhcCcC
Confidence            4789999999999999999999864

>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.06  E-value=5.4e-05  Score=61.62  Aligned_cols=24  Identities=25%  Similarity=0.573  Sum_probs=21.7

Q ss_pred             CCHHHHHHHHHHHHHhhccccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      .|.++++||.++|.++|++||+..
T Consensus        41 ~d~~~v~~G~~lf~~~Ca~CHG~~   64 (147)
T d2gc4d1          41 EDPEILPEAEELYAGMCSGCHGHY   64 (147)
T ss_dssp             TCTTTHHHHHHHHHHHTHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHhcccccCcC
Confidence            478899999999999999999864

>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Pseudomonas putida [TaxId: 303]

Probab=97.01  E-value=0.00012  Score=55.40  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhcccccccccc-cccccCCCCCHHHHHHH
Q psy10277         52 RRGYEVYKNVCAACHSARFIC-YRNLVGVSHTEAEAKRE   89 (305)
Q Consensus        52 qRG~qVf~~vCaaCHSlky~~-y~~l~~~g~t~~evk~~   89 (305)
                      +.|.+++.+.|.+|||..++. +.++...+.|.++..+.
T Consensus         1 e~G~~lv~~~C~~CHs~~~i~~~~~v~~~r~t~~~W~~~   39 (84)
T d1jmxa1           1 EQGPSLLQNKCMGCHIPEGNDTYSRISHQRKTPEGWLMS   39 (84)
T ss_dssp             CCHHHHHHHHHBTTBCEEETTEETTGGGCEECHHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCchhhccccccccCCCCHHHHHHH
Confidence            469999999999999999985 56667777887776654

>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Monoraphidium braunii [TaxId: 34112]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Monoraphidium braunii [TaxId: 34112]

Probab=96.97  E-value=6e-05  Score=55.17  Aligned_cols=20  Identities=35%  Similarity=0.777  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      .|.+|.++|.++|++||+..
T Consensus         3 dl~~G~~ly~~~Ca~CHg~~   22 (89)
T d1ctja_           3 DLALGKAVFDGNCAACHAGG   22 (89)
T ss_dssp             CHHHHHHHHHHHTHHHHGGG
T ss_pred             cHHHHHHHHHHhchhccccc
Confidence            47899999999999999853

>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG) {Methylobacterium extorquens [TaxId: 408]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c-L (MoxG)
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.88  E-value=0.00018  Score=58.43  Aligned_cols=25  Identities=24%  Similarity=0.615  Sum_probs=22.4

Q ss_pred             CCCHHHHHHHHHHHHHhhccccccc
Q psy10277         45 SFDHASIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~vCaaCHSlk   69 (305)
                      ..|.+.|+||.++|.++|++||+..
T Consensus        25 ~~d~~~v~~G~~ly~~~Ca~CHg~~   49 (149)
T d2c8sa1          25 IDDKSCLRNGESLFATSCSGCHGHL   49 (149)
T ss_dssp             TTCHHHHHHHHHHHHHHTHHHHCTT
T ss_pred             cCCHHHHHHHHHHHHHhCccccCCC
Confidence            3688999999999999999999863

>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549 {Arthrospira maxima [TaxId: 129910]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Photosystem II associated cytochrome c549
species: Arthrospira maxima [TaxId: 129910]

Probab=96.86  E-value=0.00017  Score=55.60  Aligned_cols=23  Identities=30%  Similarity=0.820  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHHHhhcccccc
Q psy10277         46 FDHASIRRGYEVYKNVCAACHSA   68 (305)
Q Consensus        46 ~D~asLqRG~qVf~~vCaaCHSl   68 (305)
                      ...++++||.++|.+.|++||+.
T Consensus        19 ~~~~~~~~G~~lf~~~Ca~CH~~   41 (129)
T d1f1ca_          19 LSLKEIKKGQQVFNAACAQCHAL   41 (129)
T ss_dssp             CCHHHHHHHHHHHHHHTHHHHGG
T ss_pred             CCHHHHHHHHHHHHHhhHHHcCC
Confidence            56789999999999999999984

>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c5
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.69  E-value=0.00012  Score=53.40  Aligned_cols=20  Identities=35%  Similarity=0.748  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhhcccccccc
Q psy10277         51 IRRGYEVYKNVCAACHSARF   70 (305)
Q Consensus        51 LqRG~qVf~~vCaaCHSlky   70 (305)
                      .++|.++|.++|++||+..-
T Consensus         4 ~~~G~~ly~~~Ca~CHg~~g   23 (83)
T d1cc5a_           4 ARSGDDVVAKYCNACHGTGL   23 (83)
T ss_dssp             SSCSHHHHHHTTHHHHTTTT
T ss_pred             cchHHHHHHHHHHHHhcCCC
Confidence            57899999999999999643

>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2 {Paracoccus denitrificans [TaxId: 266]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
domain: Quinohemoprotein amine dehydrogenase A chain, domains 1 and 2
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.58  E-value=0.00054  Score=51.77  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=27.5

Q ss_pred             HHHHHHHhhcccccccccc-cccccCCCCCHHHHHHH
Q psy10277         54 GYEVYKNVCAACHSARFIC-YRNLVGVSHTEAEAKRE   89 (305)
Q Consensus        54 G~qVf~~vCaaCHSlky~~-y~~l~~~g~t~~evk~~   89 (305)
                      |.+++.+.|++|||..++. +.++.....|.++..+.
T Consensus         3 G~~lv~~~C~~CHs~~~i~~~~~v~~~r~t~~~W~~~   39 (85)
T d1pbya1           3 GEEVLQNACAACHVQHEDGRWERIDAARKTPEGWDMT   39 (85)
T ss_dssp             HHHHHHHTGGGTSCBCTTSCBTTGGGEEECHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcccccchhhhccCCCCHHHHHHH
Confidence            8999999999999999875 45555556676665553

>d1ynra1 a.3.1.1 (A:1-80) Cytochrome c552 {Hydrogenobacter thermophilus [TaxId: 940]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Hydrogenobacter thermophilus [TaxId: 940]

Probab=96.08  E-value=0.0072  Score=43.27  Aligned_cols=14  Identities=36%  Similarity=0.695  Sum_probs=11.6

Q ss_pred             HHHHHH-hhcccccc
Q psy10277         55 YEVYKN-VCAACHSA   68 (305)
Q Consensus        55 ~qVf~~-vCaaCHSl   68 (305)
                      .|+|++ .|++||+.
T Consensus         2 ~~L~~~~~C~~CH~~   16 (80)
T d1ynra1           2 EQLAKQKGCMACHDL   16 (80)
T ss_dssp             HHHHHHHTGGGTCCS
T ss_pred             HHHHHcCCcHhhCCC
Confidence            478888 59999996

>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=95.83  E-value=0.0022  Score=46.17  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhhcccccccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSARFICYR   74 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlky~~y~   74 (305)
                      .+++|.++|.+ |++||+.+-....
T Consensus         3 d~~~G~~l~~~-Ca~CHg~~G~g~~   26 (92)
T d1m70a1           3 DAEAGQGKVAV-CGACHGVDGNSPA   26 (92)
T ss_dssp             CHHHHHTTCGG-GHHHHCTTSCCCC
T ss_pred             CHHHhHHHHHH-HHHhCCCcccccc
Confidence            47899999975 9999998765544

>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Pseudomonas stutzeri [TaxId: 316]

Probab=95.81  E-value=0.0016  Score=49.28  Aligned_cols=26  Identities=23%  Similarity=0.576  Sum_probs=22.2

Q ss_pred             CCCHHHHHHHHHHHHH--------hhcccccccc
Q psy10277         45 SFDHASIRRGYEVYKN--------VCAACHSARF   70 (305)
Q Consensus        45 ~~D~asLqRG~qVf~~--------vCaaCHSlky   70 (305)
                      .-|.+.+.+|.++|++        .|++||+.+-
T Consensus         2 ~Ad~a~~~~G~~l~~~G~~~~~i~~C~~CHg~~G   35 (98)
T d1m70a2           2 YADPALAKQGEKLFRGGKLDQGMPACTGCHAPNG   35 (98)
T ss_dssp             CCCHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTS
T ss_pred             CCCHHHHHHHHHHHHcCCcccCCchhhhcCCCcc
Confidence            4589999999999987        6999999643

>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c6 (synonym: cytochrome c553)
species: Desulfovibrio vulgaris, different strains [TaxId: 881]

Probab=95.75  E-value=0.0011  Score=47.06  Aligned_cols=16  Identities=44%  Similarity=1.039  Sum_probs=13.6

Q ss_pred             HHHHHHHHhhccccccc
Q psy10277         53 RGYEVYKNVCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlk   69 (305)
                      +|.++|.+ |++||+.+
T Consensus         2 ~G~~ly~~-Ca~CHG~~   17 (79)
T d1c53a_           2 DGAALYKS-CVGCHGAD   17 (79)
T ss_pred             CcHHHHHH-HHHhCCCc
Confidence            69999965 99999864

>d1a56a_ a.3.1.1 (A:) Cytochrome c552 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.64  E-value=0.0058  Score=43.81  Aligned_cols=14  Identities=36%  Similarity=0.842  Sum_probs=10.3

Q ss_pred             HHHHH-hhccccccc
Q psy10277         56 EVYKN-VCAACHSAR   69 (305)
Q Consensus        56 qVf~~-vCaaCHSlk   69 (305)
                      ++|.+ .|++||+..
T Consensus         3 eL~~~~~C~~CH~~~   17 (81)
T d1a56a_           3 DLAKKNNCIACHQVE   17 (81)
T ss_dssp             HHHHHHSHHHHBCSS
T ss_pred             HHHHcCCcHhhCCCc
Confidence            45555 799999963

>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.001  Score=51.96  Aligned_cols=16  Identities=38%  Similarity=0.968  Sum_probs=13.9

Q ss_pred             HHHHHHHHhhccccccc
Q psy10277         53 RGYEVYKNVCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlk   69 (305)
                      +|.++|. .|++||+..
T Consensus         3 ~G~~lY~-~Ca~CHG~~   18 (131)
T d1c52a_           3 DGAKIYA-QCAGCHQQN   18 (131)
T ss_dssp             CHHHHTH-HHHHHHCTT
T ss_pred             chHHHHH-HHHHHcCCC
Confidence            7999996 599999974

>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c552
species: Pseudomonas nautica [TaxId: 2743]

Probab=95.53  E-value=0.0012  Score=47.63  Aligned_cols=19  Identities=37%  Similarity=0.642  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHhhccccccc
Q psy10277         50 SIRRGYEVYKNVCAACHSAR   69 (305)
Q Consensus        50 sLqRG~qVf~~vCaaCHSlk   69 (305)
                      .+.||.++|.+ |++||+.+
T Consensus         3 D~~~Gk~l~~~-Ca~CHg~~   21 (86)
T d1cnoa_           3 DIEAGKAKAAV-CAACHGQN   21 (86)
T ss_dssp             CHHHHHHHGGG-THHHHCTT
T ss_pred             CHHHhHHHHHH-HHHhcCcc
Confidence            47899999965 99999864

>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.36  E-value=0.0019  Score=46.31  Aligned_cols=17  Identities=35%  Similarity=0.710  Sum_probs=14.7

Q ss_pred             HHHHHHHHhhccccccc
Q psy10277         53 RGYEVYKNVCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~vCaaCHSlk   69 (305)
                      +|.++|.+.|++||+..
T Consensus         2 p~~~l~~~~Ca~CHG~~   18 (80)
T d1fcdc1           2 PTAEMLTNNCAGCHGTH   18 (80)
T ss_dssp             CCHHHHHHTTTTTSCGG
T ss_pred             chHHHHHHHHHHhCcCc
Confidence            46889999999999964

>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Nitrosomonas europaea [TaxId: 915]

Probab=94.21  E-value=0.01  Score=48.66  Aligned_cols=21  Identities=29%  Similarity=0.793  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHh-hccccccc
Q psy10277         49 ASIRRGYEVYKNV-CAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~v-CaaCHSlk   69 (305)
                      ++.+||+++|.+. |++||+-.
T Consensus        19 ~~~~rG~~lF~~~gC~~CH~gp   40 (158)
T d1iqca2          19 QDELEGYNLFKGSGCVQCHNGP   40 (158)
T ss_dssp             HHHHHHHHHHHHHTGGGTSCTT
T ss_pred             HHHHHHHHHHccCCCcccccCc
Confidence            4678999999864 99999753

>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas nautica [TaxId: 2743]

Probab=93.75  E-value=0.013  Score=48.05  Aligned_cols=22  Identities=32%  Similarity=0.655  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHH-hhcccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSARF   70 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlky   70 (305)
                      ++.+||+++|.+ -|++||+-..
T Consensus        17 ~~e~rG~~LF~~~gC~~CH~~~~   39 (160)
T d1nmla2          17 ESEKEGLALFMDRGCTACHSGVN   39 (160)
T ss_dssp             HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred             HHHHHHHHHHhccCCCccccccc
Confidence            678999999966 7999997543

>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Di-heme cytochrome c peroxidase
domain: Di-heme cytochrome c peroxidase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.58  E-value=0.015  Score=47.71  Aligned_cols=21  Identities=29%  Similarity=0.763  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHH-hhccccccc
Q psy10277         49 ASIRRGYEVYKN-VCAACHSAR   69 (305)
Q Consensus        49 asLqRG~qVf~~-vCaaCHSlk   69 (305)
                      ++.+||+++|.+ -|++||+-.
T Consensus        19 ~~e~rG~~lF~~~gCa~CH~gp   40 (159)
T d1eb7a2          19 AQQKKGLKAFMDSGCSACHNGI   40 (159)
T ss_dssp             HHHHHHHHHHHHTTGGGTSCBT
T ss_pred             HHHHHHHHHHHhcCCccccccc
Confidence            577999999976 699999643

>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: Two-domain cytochrome c
domain: Cytochrome c4
species: Thiobacillus ferrooxidans [TaxId: 920]

Probab=93.39  E-value=0.025  Score=42.24  Aligned_cols=45  Identities=16%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             CHHHHHHHHHHHHH--------hhcccccccccc---cccccCCCCCHHHHHHHHHHh
Q psy10277         47 DHASIRRGYEVYKN--------VCAACHSARFIC---YRNLVGVSHTEAEAKREAEEI   93 (305)
Q Consensus        47 D~asLqRG~qVf~~--------vCaaCHSlky~~---y~~l~~~g~t~~evk~~a~~~   93 (305)
                      .++.++||.++|.+        .|++||+..-..   |-+|  .|.+.+.+.+-...|
T Consensus         3 ~~a~~~~G~~iy~~G~~~~~~~~C~~CHG~~G~g~~~~P~L--aGq~~~Yl~~qL~~f   58 (90)
T d1h1oa2           3 KHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQGAGPFPRL--AGQRYGYIIQQLTYF   58 (90)
T ss_dssp             CCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTSCCBTTBCCC--TTCCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCcccCCchhhhcCCCccCCCCCCCcc--CCCCHHHHHHHHHHH
Confidence            45778999999987        499999976533   2333  245666555444444

>d1gksa_ a.3.1.1 (A:) Cytochrome c551 {Ectothiorhodospira halophila [TaxId: 1053]}

class: All alpha proteins
fold: Cytochrome c
superfamily: Cytochrome c
family: monodomain cytochrome c
domain: Cytochrome c551
species: Ectothiorhodospira halophila [TaxId: 1053]

Probab=91.25  E-value=0.02  Score=41.14  Aligned_cols=17  Identities=35%  Similarity=0.911  Sum_probs=14.1

Q ss_pred             HHHHHHHH----hhccccccc
Q psy10277         53 RGYEVYKN----VCAACHSAR   69 (305)
Q Consensus        53 RG~qVf~~----vCaaCHSlk   69 (305)
                      .|.++|.+    +|++||+..
T Consensus         1 dG~~iy~~~~~~~CasCHg~~   21 (78)
T d1gksa_           1 DGESIYINGTAPTCSSCHDRG   21 (78)
T ss_dssp             CHHHHHHTSSSSCSHHHHTTT
T ss_pred             CHHHHHhhccchhhHHHhccC
Confidence            38899988    599999863