Psyllid ID: psy10286
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 748 | 2.2.26 [Sep-21-2011] | |||||||
| O94889 | 574 | Kelch-like protein 18 OS= | yes | N/A | 0.636 | 0.829 | 0.408 | 1e-116 | |
| D3Z8N4 | 609 | Kelch-like protein 20 OS= | no | N/A | 0.640 | 0.786 | 0.418 | 1e-116 | |
| Q9Y2M5 | 609 | Kelch-like protein 20 OS= | no | N/A | 0.640 | 0.786 | 0.418 | 1e-116 | |
| Q08DK3 | 609 | Kelch-like protein 20 OS= | no | N/A | 0.640 | 0.786 | 0.418 | 1e-116 | |
| Q8VCK5 | 604 | Kelch-like protein 20 OS= | no | N/A | 0.640 | 0.793 | 0.418 | 1e-116 | |
| Q6DFF6 | 604 | Kelch-like protein 20 OS= | N/A | N/A | 0.640 | 0.793 | 0.416 | 1e-115 | |
| Q5R7B8 | 609 | Kelch-like protein 20 OS= | no | N/A | 0.640 | 0.786 | 0.416 | 1e-115 | |
| Q5ZKD9 | 610 | Kelch-like protein 20 OS= | no | N/A | 0.640 | 0.785 | 0.413 | 1e-113 | |
| Q2M0J9 | 628 | Kelch-like protein diablo | no | N/A | 0.643 | 0.765 | 0.408 | 1e-111 | |
| B4L0G9 | 617 | Kelch-like protein diablo | N/A | N/A | 0.643 | 0.779 | 0.408 | 1e-111 |
| >sp|O94889|KLH18_HUMAN Kelch-like protein 18 OS=Homo sapiens GN=KLHL18 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 421 bits (1081), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/531 (40%), Positives = 296/531 (55%), Gaps = 55/531 (10%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+EALINFAY+G + I QNVQSL++ ASFLQ+Q + DAC FL++R HP N LG+RQFA
Sbjct: 88 ALEALINFAYNGNLAIDQQNVQSLLMGASFLQLQSIKDACCTFLRERLHPKNCLGVRQFA 147
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
+T+ C L +AA+ ++ Q+F EVSMS+EF+ L + +V ++V R EL++ SEEQVFEA +
Sbjct: 148 ETMMCAVLYDAANSFIHQHFVEVSMSEEFLALPLEDVLELVSRDELNVKSEEQVFEAALA 207
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WV+++ +R P LP LL+ +RLPL P +L+DRV + L+R H+CRDLVDEA+D+HLMP
Sbjct: 208 WVRYDREQRGPYLPELLSNIRLPLCRPQFLSDRVQQDDLVRCCHKCRDLVDEAKDYHLMP 267
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR L +T PR C + G I+AVGGL AGDSL+ VEVFDP+ W+ T + +
Sbjct: 268 ERRPHLPAFRTRPRCCTSIAGLIYAVGGLNSAGDSLNVVEVFDPIANCWERCRPMTTARS 327
Query: 462 ---VISTKSCLTKAGD-----SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYA 513
V L G LSTVE ++P W +M+ RS +G V+ ++Y
Sbjct: 328 RVGVAVVNGLLYAIGGYDGQLRLSTVEAYNPETDTWTRVGSMNSKRSAMGTVVLDGQIYV 387
Query: 514 FGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTV 573
GGY+G+ LS+VE + P W V+ M RSA G ++YV GG+DG+ ++V
Sbjct: 388 CGGYDGNSSLSSVETYSPETDKWTVVTSMSSNRSAAGVTVFEGRIYVSGGHDGLQIFSSV 447
Query: 574 ECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633
E Y W M R G + S ++ GG+DG E Y D+W +
Sbjct: 448 EHYNHHTATWHPAAGMLNKRCRHGAASLGSKMFVCGGYDGSGFLSIAEMYSSVADQWCLI 507
Query: 634 KPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV 693
PM T+R R+ + A ++Y GGYDG L SVEMYDP TD W +A
Sbjct: 508 VPMHTRRSRVSLVASCGRLYAVGGYDGQSNLSSVEMYDPETDCWTFMA------------ 555
Query: 694 ANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744
PM HEGGVGVG IP+
Sbjct: 556 -----------------------------------PMACHEGGVGVGCIPL 571
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Homo sapiens (taxid: 9606) |
| >sp|D3Z8N4|KLH20_RAT Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/526 (41%), Positives = 309/526 (58%), Gaps = 47/526 (8%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ ER P LP++L VRLPLLSP +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET 457
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------- 345
Query: 458 LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY 517
+M +MS R VGV+V+ + LYA GG+
Sbjct: 346 --------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGGH 373
Query: 518 NGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE Y
Sbjct: 374 DGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERY 433
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ PM
Sbjct: 434 DPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPM 493
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 494 GTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVN 553
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+GG+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 554 GQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Rattus norvegicus (taxid: 10116) |
| >sp|Q9Y2M5|KLH20_HUMAN Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/526 (41%), Positives = 309/526 (58%), Gaps = 47/526 (8%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ ER P LP++L VRLPLLSP +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET 457
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------- 345
Query: 458 LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY 517
+M +MS R VGV+V+ + LYA GG+
Sbjct: 346 --------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGGH 373
Query: 518 NGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE Y
Sbjct: 374 DGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERY 433
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ PM
Sbjct: 434 DPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPM 493
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 494 GTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVN 553
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+GG+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 554 GQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases. Homo sapiens (taxid: 9606) |
| >sp|Q08DK3|KLH20_BOVIN Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/526 (41%), Positives = 309/526 (58%), Gaps = 47/526 (8%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ ER P LP++L VRLPLLSP +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET 457
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------- 345
Query: 458 LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY 517
+M +MS R VGV+V+ + LYA GG+
Sbjct: 346 --------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGGH 373
Query: 518 NGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE Y
Sbjct: 374 DGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERY 433
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ PM
Sbjct: 434 DPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPM 493
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 494 GTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVN 553
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+GG+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 554 GQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases. Bos taurus (taxid: 9913) |
| >sp|Q8VCK5|KLH20_MOUSE Kelch-like protein 20 OS=Mus musculus GN=Klhl20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 418 bits (1075), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/526 (41%), Positives = 309/526 (58%), Gaps = 47/526 (8%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 112 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 171
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 172 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 231
Query: 341 RWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ ER P LP++L VRLPLLSP +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 232 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 291
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET 457
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 292 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------- 340
Query: 458 LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY 517
+M +MS R VGV+V+ + LYA GG+
Sbjct: 341 --------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGGH 368
Query: 518 NGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE Y
Sbjct: 369 DGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERY 428
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ PM
Sbjct: 429 DPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPM 488
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 489 GTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVN 548
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+GG+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 549 GQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 594
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases. Mus musculus (taxid: 10090) |
| >sp|Q6DFF6|KLH20_XENLA Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/526 (41%), Positives = 309/526 (58%), Gaps = 47/526 (8%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+F+Y+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 112 RAMELLIDFSYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 171
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 172 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 231
Query: 341 RWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ ER P LP++L VRLPLLSP +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 232 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 291
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET 457
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 292 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------- 340
Query: 458 LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY 517
+M +MS R VGV+V+ + LYA GG+
Sbjct: 341 --------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGGH 368
Query: 518 NGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE Y
Sbjct: 369 DGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVERY 428
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ PM
Sbjct: 429 DPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPM 488
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 489 GTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVN 548
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+GG+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 549 GQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 594
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome. Xenopus laevis (taxid: 8355) |
| >sp|Q5R7B8|KLH20_PONAB Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/526 (41%), Positives = 308/526 (58%), Gaps = 47/526 (8%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ ER P LP++L VRLPLLSP +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSTQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET 457
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------- 345
Query: 458 LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY 517
+M +MS R VGV+V+ + LYA GG+
Sbjct: 346 --------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGGH 373
Query: 518 NGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE Y
Sbjct: 374 DGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERY 433
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ PM
Sbjct: 434 DPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAPM 493
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 494 GTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVVN 553
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+ G+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 554 GQLMAVRGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 599
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases. Pongo abelii (taxid: 9601) |
| >sp|Q5ZKD9|KLH20_CHICK Kelch-like protein 20 OS=Gallus gallus GN=KLHL20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/527 (41%), Positives = 307/527 (58%), Gaps = 48/527 (9%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+ + A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTSLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDE-FIGLGVNEVNDIVKRSELHLMSEEQVFEAV 339
ADT +C +L ADK+ Q F EV S+E F+ L N++ DI+ EL++ SEEQVF AV
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEEFMLLPANQLIDIISSDELNVRSEEQVFNAV 236
Query: 340 MRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHL 399
M WVK++ ER P LP++L VRLPLLS +L V ++ LI+S ECRDLVDEA+++ L
Sbjct: 237 MAWVKYSIQERRPQLPQVLQHVRLPLLSTKFLVGTVGSDPLIKSDEECRDLVDEAKNYLL 296
Query: 400 MPERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE 456
+P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W
Sbjct: 297 LPQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEW------ 346
Query: 457 TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGG 516
+M +MS R VGV+V+ + LYA GG
Sbjct: 347 ---------------------------------RMVASMSKRRCGVGVSVLDDLLYAVGG 373
Query: 517 YNGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVEC 575
++GS L++VE +DP W+ V+P R++VG A L LY GG DGVS LN VE
Sbjct: 374 HDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER 433
Query: 576 YEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP 635
Y+P +++W V SM R V ++YA+GG DG S ++VERY+P+ + W ++ P
Sbjct: 434 YDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTSPLNTVERYNPQENRWHTIAP 493
Query: 636 MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN 695
M T+R LG A + IY GG D L S E Y+P T++W + +M RS V L
Sbjct: 494 MGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTNQWSPVVAMTSRRSGVGLAVV 553
Query: 696 MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G+L A+GG+DG + L T+EV+DP ++W M G GVGVI
Sbjct: 554 NGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRRLGGGVGVI 600
|
Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome. Gallus gallus (taxid: 9031) |
| >sp|Q2M0J9|KLHDB_DROPS Kelch-like protein diablo OS=Drosophila pseudoobscura pseudoobscura GN=dbo PE=3 SV=2 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/522 (40%), Positives = 299/522 (57%), Gaps = 41/522 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
AME LI+F Y+ + + NVQ+L+ A LQ+ ++ D C +FLK++ P N LGIR FA
Sbjct: 124 AMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPTNCLGIRAFA 183
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DT +C +L ADK+ Q F EV S+EF+ L V ++ DI+ EL++ SEEQVF AVM
Sbjct: 184 DTHSCRELLRIADKFTQHNFQEVMESEEFLLLPVGQLVDIICSDELNVRSEEQVFNAVMS 243
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
W+K+N +ER L ++L VRLPLLSP +L V ++ L+RS CRDLVDEA+++ L+P
Sbjct: 244 WLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLP 303
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
+ R L+ G +T PR+ +FAVGG
Sbjct: 304 QERPLMQGPRTRPRKPTRRGEVLFAVGGWC------------------------------ 333
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
+GD++++VE FDP W+M MS R VGVAV+ + LYA GG++G
Sbjct: 334 ----------SGDAIASVERFDPQTNDWKMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQS 383
Query: 522 RLSTVEEFDPVRRVWN-KVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK 580
L+++E +DP W+ V+P R++VG A L+ LY GG DGV LN VE Y+P +
Sbjct: 384 YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE 443
Query: 581 DQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640
++W V M R V ++YA+GG DG ++VERYDP+ ++W +V PM T+R
Sbjct: 444 NKWSKVAPMTTRRLGVAVAVLGGFLYAIGGSDGQCPLNTVERYDPRQNKWVAVSPMSTRR 503
Query: 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLW 700
LG A NN IY GG D + L S E Y+P+T+ W I +M RS V L G+L+
Sbjct: 504 KHLGCAVFNNYIYAVGGRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLY 563
Query: 701 AIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
A+GG+DG + L T+EVYDP T+ W M G GVGV+
Sbjct: 564 AVGGFDGSAYLKTIEVYDPETNQWRLCGCMNYRRLGGGVGVM 605
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4L0G9|KLHDB_DROMO Kelch-like protein diablo OS=Drosophila mojavensis GN=dbo PE=3 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/522 (40%), Positives = 299/522 (57%), Gaps = 41/522 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
AME LI+F Y+ + + NVQ+L+ A LQ+ ++ D C +FLK++ P N LGIR FA
Sbjct: 123 AMELLIDFCYTAHIIVEESNVQTLLPAACLLQLVEIQDICCEFLKRQLDPTNCLGIRAFA 182
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DT +C +L ADK+ Q F EV S+EF+ L V ++ DI+ EL++ SEEQVF AVM
Sbjct: 183 DTHSCRELLRIADKFTQHNFQEVMESEEFLLLPVGQLVDIICSDELNVRSEEQVFNAVMS 242
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
W+K+N +ER L ++L VRLPLLSP +L V ++ L+RS CRDLVDEA+++ L+P
Sbjct: 243 WLKYNVAERRQHLAQVLQHVRLPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLP 302
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
+ R L+ G +T PR+ +FAVGG
Sbjct: 303 QERPLMQGPRTRPRKPTRRGEVLFAVGGWC------------------------------ 332
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
+GD++++VE FDP W+M MS R VGVAV+ + LYA GG++G
Sbjct: 333 ----------SGDAIASVERFDPQTNDWKMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQS 382
Query: 522 RLSTVEEFDPVRRVWN-KVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK 580
L+++E +DP W+ V+P R++VG A L+ LY GG DGV LN VE Y+P +
Sbjct: 383 YLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLYAVGGQDGVQCLNHVERYDPKE 442
Query: 581 DQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640
++W V M R V ++YA+GG DG ++VERYDP+ ++W +V PM T+R
Sbjct: 443 NKWSKVAPMTTRRLGVAVAVLSGHLYAIGGSDGQCPLNTVERYDPRQNKWVAVNPMSTRR 502
Query: 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLW 700
LG A NN IY GG D + L S E Y+P+T+ W I +M RS V L G+L+
Sbjct: 503 KHLGCAVFNNYIYAVGGRDDCMELSSAERYNPLTNTWSPIVAMTSRRSGVGLAVVNGQLY 562
Query: 701 AIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
A+GG+DG + L T+EVYDP T+ W M G GVGV+
Sbjct: 563 AVGGFDGSAYLKTIEVYDPETNQWRLCGCMNYRRLGGGVGVM 604
|
Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth. Drosophila mojavensis (taxid: 7230) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 748 | ||||||
| 328717584 | 604 | PREDICTED: kelch-like protein 18-like [A | 0.649 | 0.804 | 0.641 | 0.0 | |
| 427784553 | 566 | Hypothetical protein [Rhipicephalus pulc | 0.75 | 0.991 | 0.523 | 0.0 | |
| 427779053 | 600 | Hypothetical protein [Rhipicephalus pulc | 0.75 | 0.935 | 0.499 | 0.0 | |
| 242018538 | 568 | conserved hypothetical protein [Pediculu | 0.633 | 0.834 | 0.623 | 0.0 | |
| 321466207 | 569 | hypothetical protein DAPPUDRAFT_305899 [ | 0.747 | 0.982 | 0.482 | 0.0 | |
| 170054425 | 574 | conserved hypothetical protein [Culex qu | 0.627 | 0.817 | 0.616 | 0.0 | |
| 158287487 | 610 | AGAP011142-PA [Anopheles gambiae str. PE | 0.628 | 0.770 | 0.601 | 1e-179 | |
| 195444084 | 571 | GK11665 [Drosophila willistoni] gi|19416 | 0.637 | 0.835 | 0.579 | 1e-176 | |
| 312379911 | 501 | hypothetical protein AND_08118 [Anophele | 0.622 | 0.930 | 0.593 | 1e-174 | |
| 443702327 | 568 | hypothetical protein CAPTEDRAFT_151000 [ | 0.645 | 0.850 | 0.571 | 1e-167 |
| >gi|328717584|ref|XP_001950327.2| PREDICTED: kelch-like protein 18-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/527 (64%), Positives = 401/527 (76%), Gaps = 41/527 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+EALINFAYSGR++I+ NVQSL++ ASFLQ++ V +ACA F+K+RFH NNVL +R A
Sbjct: 117 ALEALINFAYSGRISINVNNVQSLLIGASFLQLKWVRNACATFIKERFHQNNVLKVRTLA 176
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
D+L C L +++Y+ QYF ++S+S++F+ L ++E+ DIV + EL SEEQVFEA +R
Sbjct: 177 DSLGCFGLMTDSNRYIAQYFPDISLSEDFLNLNISELIDIVNKDELQ-ASEEQVFEATIR 235
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVK + R P+LLAAVRLPLLSPHYLADRVATE LIRSSHECRDL+DEA+D+HLMP
Sbjct: 236 WVKQD-ELRQECFPQLLAAVRLPLLSPHYLADRVATEELIRSSHECRDLLDEAKDYHLMP 294
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR LL +T PR +Y+ GHI+AVGGLTK
Sbjct: 295 ERRLLLQSFRTRPRCVSYIRGHIYAVGGLTK----------------------------- 325
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
+GDSLSTVEV++PL RW++AEAMS+LRSRVGVAV+ N+LYAFGGYNG E
Sbjct: 326 ----------SGDSLSTVEVYNPLTERWELAEAMSILRSRVGVAVLNNKLYAFGGYNGIE 375
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RLS+VE FDP + WN VSPM KRSA+GAAALND+LYVCGG+DGVSSLN VECY+PD D
Sbjct: 376 RLSSVEVFDPATKSWNIVSPMHRKRSALGAAALNDRLYVCGGFDGVSSLNIVECYQPDLD 435
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
+W I+ MQKHRSAGGV+AFD Y+Y LGGHDGLSIFDSVERYD T +W SV PML KRC
Sbjct: 436 RWTIITPMQKHRSAGGVVAFDGYIYILGGHDGLSIFDSVERYDTYTGQWLSVTPMLIKRC 495
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA LN K+Y CGGYDG+ FLQ+VE YDP TD+W+ +ASMNV RSRVALVAN GKLWA
Sbjct: 496 RLGVATLNGKLYACGGYDGSTFLQTVEEYDPQTDKWRFVASMNVTRSRVALVANAGKLWA 555
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPICNPD 748
IGGYDG NLPTVEVYDP D W F A MCAHEGGVGVGVIPI P+
Sbjct: 556 IGGYDGFLNLPTVEVYDPKADCWTFAASMCAHEGGVGVGVIPIQEPE 602
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427784553|gb|JAA57728.1| Hypothetical protein [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/697 (52%), Positives = 443/697 (63%), Gaps = 136/697 (19%)
Query: 47 DECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTS 106
DEC +F Q DL S F ++EEIRRQGKLCD+T+KVDD+ FT HRIVLA+
Sbjct: 4 DECYMFSQSDLPSSSFGLIEEIRRQGKLCDITLKVDDEIFTAHRIVLAS----------- 52
Query: 107 DMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINF 166
TIPYF AMF DM ESKQ+EIT++GI+A A+EALINF
Sbjct: 53 -----------------------TIPYFYAMFMHDMMESKQKEITIRGIEASALEALINF 89
Query: 167 VYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEAL 226
YSG+V I + NVQSL+V ASFLQ+ KV +AC++FL KR HP NVL
Sbjct: 90 AYSGKVNITATNVQSLLVGASFLQLLKVREACSEFLVKRLHPTNVL-------------- 135
Query: 227 INFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNC 286
++S A L + +A F++K F L+
Sbjct: 136 --------------GIRSF---ADTLGCPGLVEATNKFIQKHF--------------LDV 164
Query: 287 LQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHN 346
Q SDEF+ L + + +I+ +L+++SEEQVFEAVM WV ++
Sbjct: 165 CQ------------------SDEFLALPLQDAIEIIGWDQLYVVSEEQVFEAVMSWVLYD 206
Query: 347 ASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFL 406
R LP +LA VRLPLLSP +LADRVA E L+R H CRDL+DEARD+ LMPERR L
Sbjct: 207 RENRGAILPEVLAHVRLPLLSPQFLADRVAAEPLVRGCHRCRDLLDEARDYLLMPERRPL 266
Query: 407 LAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTK 466
L G +T PR C V GHI+AVGGLTKAGDS STVEV+DP +G WQ+AE
Sbjct: 267 LQGFRTRPRCCPDVAGHIYAVGGLTKAGDSQSTVEVYDPKLGHWQVAE------------ 314
Query: 467 SCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTV 526
AMSM RSRVGVAV++ +LYA GGYNG ERL TV
Sbjct: 315 ---------------------------AMSMTRSRVGVAVLRGKLYAIGGYNGLERLRTV 347
Query: 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586
E F P R+W++V+ M KRSAVGAA L+DKLYVCGGYDGVSSLNTVECY P+K++W +V
Sbjct: 348 EVFSPESRIWSRVASMNCKRSAVGAAVLHDKLYVCGGYDGVSSLNTVECYNPEKNEWTMV 407
Query: 587 KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA 646
SM KHRSA GV+AFD ++YALGGHDGLSIF SVERYD +T +W+ + MLT+RCRLGVA
Sbjct: 408 TSMSKHRSAAGVVAFDGHIYALGGHDGLSIFGSVERYDVQTGQWSPMPSMLTRRCRLGVA 467
Query: 647 ALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYD 706
L KIYVCGGYDGA FLQ+ E +DP+T +W+ +A MNV RSRVALVAN G+L+A+GGYD
Sbjct: 468 VLRGKIYVCGGYDGATFLQTTEAFDPVTQQWQFVAPMNVTRSRVALVANCGRLFAVGGYD 527
Query: 707 GVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIP 743
GVSNL TVEVYDP D W +A MCAHEGGVGVGV+P
Sbjct: 528 GVSNLSTVEVYDPEADQWTPIASMCAHEGGVGVGVLP 564
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427779053|gb|JAA54978.1| Hypothetical protein [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/731 (49%), Positives = 446/731 (61%), Gaps = 170/731 (23%)
Query: 47 DECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTS 106
DEC +F Q DL S F ++EEIRRQGKLCD+T+KVDD+ FT HRIVLA+
Sbjct: 4 DECYMFSQSDLPSSSFGLIEEIRRQGKLCDITLKVDDEIFTAHRIVLAS----------- 52
Query: 107 DMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINF 166
TIPYF AMF DM ESKQ+EIT++GI+A A+EALINF
Sbjct: 53 -----------------------TIPYFYAMFMHDMMESKQKEITIRGIEASALEALINF 89
Query: 167 VYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEAL 226
YSG+V I + NVQSL+V ASFLQ+ KV +AC++FL KR HP NVL
Sbjct: 90 AYSGKVNITATNVQSLLVGASFLQLLKVREACSEFLVKRLHPTNVL-------------- 135
Query: 227 INFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNC 286
++S A L + +A F++K F L+
Sbjct: 136 --------------GIRSF---ADTLGCPGLVEATNKFIQKHF--------------LDV 164
Query: 287 LQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHN 346
Q SDEF+ L + + +I+ +L+++SEEQVFEAVM WV ++
Sbjct: 165 CQ------------------SDEFLALPLQDAIEIIGWDQLYVVSEEQVFEAVMSWVLYD 206
Query: 347 ASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFL 406
R LP +LA VRLPLLSP +LADRVA E L+R H CRDL+DEARD+ LMPERR L
Sbjct: 207 RENRGAILPEVLAHVRLPLLSPQFLADRVAAEPLVRGCHRCRDLLDEARDYLLMPERRPL 266
Query: 407 LAGEKTTPRRC------------NYVM----------------------GHIFAVGGLTK 432
L G +T PR C +Y++ GHI+AVGGLTK
Sbjct: 267 LQGFRTRPRCCPDVAGXLLDEARDYLLMPERRPLLQGFRTRPRCCPDVAGHIYAVGGLTK 326
Query: 433 AGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMA 492
AGDS STVEV+DP +G WQ+AE
Sbjct: 327 AGDSQSTVEVYDPKLGHWQVAE-------------------------------------- 348
Query: 493 EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552
AMSM RSRVGVAV++ +LYA GGYNG ERL TVE F P R+W++V+ M KRSAVGAA
Sbjct: 349 -AMSMTRSRVGVAVLRGKLYAIGGYNGLERLRTVEVFSPESRIWSRVASMNCKRSAVGAA 407
Query: 553 ALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHD 612
L+DKLYVCGGYDGVSSLNTVECY P+K++W +V SM KHRSA GV+AFD ++YALGGHD
Sbjct: 408 VLHDKLYVCGGYDGVSSLNTVECYNPEKNEWTMVTSMSKHRSAAGVVAFDGHIYALGGHD 467
Query: 613 GLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDP 672
GLSIF SVERYD +T +W+ + MLT+RCRLGVA L KIYVCGGYDGA FLQ+ E +DP
Sbjct: 468 GLSIFGSVERYDVQTGQWSPMPSMLTRRCRLGVAVLRGKIYVCGGYDGATFLQTTEAFDP 527
Query: 673 ITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732
+T +W+ +A MNV RSRVALVAN G+L+A+GGYDGVSNL TVEVYDP D W +A MCA
Sbjct: 528 VTQQWQFVAPMNVTRSRVALVANCGRLFAVGGYDGVSNLSTVEVYDPEADQWTPIASMCA 587
Query: 733 HEGGVGVGVIP 743
HEGGVGVGV+P
Sbjct: 588 HEGGVGVGVLP 598
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242018538|ref|XP_002429731.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212514743|gb|EEB16993.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/513 (62%), Positives = 387/513 (75%), Gaps = 39/513 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+EAL+NF+YSG+V I + +VQSLM ASFLQ+++V +ACA FLK+RF NVLGIR FA
Sbjct: 84 ALEALVNFSYSGKVLIDNNSVQSLMAGASFLQLEEVENACAHFLKERFQAGNVLGIRGFA 143
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DTL C L EA +K++QQYF+EVS+S+EF L E+ DI++R EL + SEEQVFEAVMR
Sbjct: 144 DTLCCSSLGEACEKFIQQYFYEVSLSEEFYNLSAKELLDIIRRDELCVDSEEQVFEAVMR 203
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVK + R LP++L+ +R+PLL+P+YL D+VA E LIRSSHECRDL+DEARD+HL+P
Sbjct: 204 WVKKDVELRKEHLPQILSKIRMPLLNPYYLTDKVAKEDLIRSSHECRDLLDEARDYHLIP 263
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR LL K PR N+V+G IFA+GGL K G
Sbjct: 264 ERRNLLQSFKIKPRCGNFVVGIIFAIGGLAKFG--------------------------- 296
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
++LSTVE ++P+V W ++EAMSMLRSRVGVAVM+N LYA GGYNG E
Sbjct: 297 ------------NALSTVESYNPVVAHWSVSEAMSMLRSRVGVAVMRNLLYAVGGYNGCE 344
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RL+TVE FDP +++W++VS M F+RSAVGAA LNDKLYVCGG+DG+ SLNTVECY+PDKD
Sbjct: 345 RLATVEVFDPFKKIWSQVSSMHFRRSAVGAAPLNDKLYVCGGFDGIRSLNTVECYDPDKD 404
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
W V SM KHRSAGGV+AF+ Y+YA+GGHDGL+IFD VERYDP TD+WT V PMLTKRC
Sbjct: 405 CWTSVTSMDKHRSAGGVLAFNGYLYAIGGHDGLTIFDLVERYDPVTDKWTEVTPMLTKRC 464
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA LN K+Y CGGYDG FLQS E+YDP WK IA MN RSRVAL+ANMGKLWA
Sbjct: 465 RLGVATLNGKLYACGGYDGYTFLQSAEVYDPNDKSWKPIAPMNTKRSRVALIANMGKLWA 524
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHE 734
IGGYDGVSNL TVE+YDP TD+W+F +PMCAHE
Sbjct: 525 IGGYDGVSNLSTVEIYDPKTDTWSFGSPMCAHE 557
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321466207|gb|EFX77204.1| hypothetical protein DAPPUDRAFT_305899 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/696 (48%), Positives = 431/696 (61%), Gaps = 137/696 (19%)
Query: 49 CLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDM 108
C++FQQ DL S FPV EEIR+QGKLCDVTIKV+D+ F+ HRIVL ATIPYF +MFT DM
Sbjct: 11 CVMFQQADLASSAFPVFEEIRKQGKLCDVTIKVEDKLFSAHRIVLCATIPYFNSMFTIDM 70
Query: 109 AESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVY 168
ES+QRE+ ++GID AME+LI F Y
Sbjct: 71 VESRQREV----------------------------------EVRGIDPSAMESLIQFAY 96
Query: 169 SGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALIN 228
SG++TIH NV +LM+ A++LQ+ +V DACADF K+R NVL
Sbjct: 97 SGKITIHPGNVNNLMIGAAYLQLNQVRDACADFYKQRLDCKNVL---------------- 140
Query: 229 FAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQ 288
++QS S C D +K
Sbjct: 141 ------------SIQSFAETLS----------CTDLVK---------------------- 156
Query: 289 LSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNAS 348
AAD+++++ F +V+ +EF+ + V+++ +++ R L ++EE FEA++RWVK ++
Sbjct: 157 ---AADRFLEKNFTQVAEEEEFVSIDVSQMQELLNRDSL-CVTEEGAFEALIRWVKKDSE 212
Query: 349 ERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLA 408
R+ LP LLA VRLPLLSP +L DRV+ E LIRS H CRDLVDEA+DFHL+PERR +
Sbjct: 213 SRSKHLPNLLAQVRLPLLSPTFLTDRVSKEELIRSCHRCRDLVDEAKDFHLLPERRSMFK 272
Query: 409 GEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSC 468
+ PR V G ++AVGGLTKAGDSLSTVEV DP+ GRW A
Sbjct: 273 SYRCRPRCFADVSGLLYAVGGLTKAGDSLSTVEVMDPVTGRWNPA--------------- 317
Query: 469 LTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEE 528
EAMS+ RSRVGVA+++N LYA GGYNG +RL TVE
Sbjct: 318 ------------------------EAMSIRRSRVGVAILRNNLYAIGGYNGVDRLQTVEV 353
Query: 529 FDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
D +R+W + M KRSA GAA+L+D LYVCGGYDGV+SLNTVE Y+P D W+ V +
Sbjct: 354 LDGPKRIWRGIGSMNCKRSAAGAASLHDYLYVCGGYDGVTSLNTVESYDPSTDCWKCVSA 413
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
M KHRSA GV+AFD+++Y LGGHDGLSIFDSVE+Y+P+T WT ML+KRCRLGVA L
Sbjct: 414 MNKHRSAAGVVAFDNHIYVLGGHDGLSIFDSVEKYNPQTGRWTPGVSMLSKRCRLGVAVL 473
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
K+Y CGGYDG+ FL+SVE++DP T++W +A M+V RSRVAL AN G+LWA+GGYDG
Sbjct: 474 EGKLYACGGYDGSTFLRSVEVFDPKTEKWNHVAPMSVTRSRVALAANAGRLWAVGGYDGT 533
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744
+NL TVEVYDP D W+F + MCAHEGGVG+GV+P+
Sbjct: 534 ANLNTVEVYDPKIDKWSFGSSMCAHEGGVGLGVVPL 569
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170054425|ref|XP_001863123.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167874729|gb|EDS38112.1| conserved hypothetical protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/509 (61%), Positives = 375/509 (73%), Gaps = 40/509 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+E+LINFAYSG V I +QNVQ LMV ASFLQ+ KV DACADFLK RFHP NVLGIR FA
Sbjct: 89 ALESLINFAYSGVVKIDNQNVQGLMVGASFLQLSKVRDACADFLKSRFHPQNVLGIRHFA 148
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DTL C QL +AD+Y+ QYF +V+ SDEF+ L E+ DIV+R EL+ SEE++FEA M+
Sbjct: 149 DTLGCSQLMTSADRYIHQYFSKVATSDEFLALKFEELIDIVRRDELN-DSEERIFEACMK 207
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVK + R+ LP +LA VRLPLL P +LAD VATE LIR+SH+CRDL+DEARDFHLMP
Sbjct: 208 WVKVDQETRSGYLPNILANVRLPLLPPQFLADNVATEELIRTSHKCRDLLDEARDFHLMP 267
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR L++ +T PR C+YV+G I+AVGGLTK
Sbjct: 268 ERRALVSACRTRPRCCDYVVGQIYAVGGLTKN---------------------------- 299
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
G+S+STVE++DP+ W+M EAMSMLRSRVGVAVM +LYAFGG+NG+E
Sbjct: 300 -----------GESVSTVEIYDPITKEWKMGEAMSMLRSRVGVAVMDGKLYAFGGFNGTE 348
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RLSTVE +DP+++ W++ M KRSAVG A L+D +YVCGGYDGV+SL+TVECY P D
Sbjct: 349 RLSTVEVYDPMQKKWSQGKAMRCKRSAVGVAGLDDLVYVCGGYDGVTSLSTVECYSPKTD 408
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
W V M K+RSAGGV YVYALGGHDGLSIFDSVERYD + WT V+ ML++RC
Sbjct: 409 SWTTVAPMMKYRSAGGVAPLGGYVYALGGHDGLSIFDSVERYDVANNTWTKVRSMLSRRC 468
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA LN K+Y CGGYDG+ FL+SVE+Y P D+W++IA MNV RSRVAL ANMGKLWA
Sbjct: 469 RLGVATLNGKLYACGGYDGSCFLRSVEVYTPENDQWQLIAPMNVKRSRVALAANMGKLWA 528
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
IGGYDG SNL TVEVYDP TD+W FVAPM
Sbjct: 529 IGGYDGESNLSTVEVYDPKTDTWTFVAPM 557
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158287487|ref|XP_309506.4| AGAP011142-PA [Anopheles gambiae str. PEST] gi|157019674|gb|EAA05226.4| AGAP011142-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 306/509 (60%), Positives = 371/509 (72%), Gaps = 39/509 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+E+LINFAYSG V I +QNVQSLMV ASFLQ+ +V DACA FLK++FHP NVLGIRQFA
Sbjct: 123 ALESLINFAYSGLVKIDTQNVQSLMVGASFLQLNEVRDACAKFLKRKFHPQNVLGIRQFA 182
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DTL C +L +AD+Y+ Q+F +V+ DEF+ L +E+ D++ R EL++ SEE +FEA MR
Sbjct: 183 DTLGCSKLIVSADRYIHQHFSKVAAGDEFVALSYSELIDVIGRDELNVKSEECIFEACMR 242
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVKH R+ LP +LA +RLPLLSP +LAD VATE LI++SH+CRDL+DEARDFHLMP
Sbjct: 243 WVKHEQETRSEYLPLILANIRLPLLSPQFLADSVATEELIKTSHKCRDLLDEARDFHLMP 302
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR L++ +T PR ++V+G IFAVGGLTK
Sbjct: 303 ERRALVSTTRTRPRCFDFVVGLIFAVGGLTKN---------------------------- 334
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
G+S+STVE+++P W M EAM+MLRSRVGVAV +LYAFGG+NG+E
Sbjct: 335 -----------GESVSTVEIYNPATKEWSMGEAMTMLRSRVGVAVTNGKLYAFGGFNGTE 383
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RLSTVE +DP + W++ + M KRSAVG AAL D +YVCGGYDGV+SL+TVE Y P D
Sbjct: 384 RLSTVEIYDPRKHRWSQGTAMRCKRSAVGVAALEDYVYVCGGYDGVTSLSTVERYCPKTD 443
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
W V M K+RSAGGV A YVYALGGHDGLSIFD+VERYDP +D WT V ML +RC
Sbjct: 444 GWSTVAPMMKYRSAGGVAALGGYVYALGGHDGLSIFDTVERYDPFSDTWTKVVSMLNRRC 503
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA L NK+Y CGGYDG FL+SVE+YDP+ + W +IA MNV RSRVAL ANMGKLWA
Sbjct: 504 RLGVATLGNKLYACGGYDGNSFLRSVEVYDPVKNSWSLIAPMNVKRSRVALAANMGKLWA 563
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
IGGYDG SNL TVEVYDP T++W FVAPM
Sbjct: 564 IGGYDGESNLSTVEVYDPKTNTWTFVAPM 592
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195444084|ref|XP_002069707.1| GK11665 [Drosophila willistoni] gi|194165792|gb|EDW80693.1| GK11665 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 626 bits (1614), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/516 (57%), Positives = 370/516 (71%), Gaps = 39/516 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+E+LIN+AYSG++ I + NVQ+LMV ASFLQ+ V DACA FL RFHP+NVLGIR FA
Sbjct: 89 ALESLINYAYSGQLRIDNVNVQNLMVGASFLQLTHVRDACATFLISRFHPHNVLGIRSFA 148
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
D + C QL +AADK+++Q F +VS S+EF+ L +++ ++++R EL++ +EE +FEA M+
Sbjct: 149 DAMICRQLIDAADKFIEQNFAKVSQSEEFLTLECDQLLELMRRDELNIRTEEVMFEACMK 208
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVK+ +R+ P++LAAVRLPLLSP +LADRVA E LIRSSH+CRDL+DEA+DFHLMP
Sbjct: 209 WVKYAEEKRSSLFPQVLAAVRLPLLSPQFLADRVAREELIRSSHQCRDLLDEAKDFHLMP 268
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR LL +T RR ++ G I+AVGGL G+
Sbjct: 269 ERRGLLQSFRTRQRRGDFFTGQIYAVGGLASTGE-------------------------- 302
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
S+STVE++DP+ +W+M E MSM+RSRVGVAV+ +LYAFGG+NG+E
Sbjct: 303 -------------SVSTVEIYDPISKKWKMGEQMSMMRSRVGVAVLDGKLYAFGGFNGTE 349
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RLSTVE +DP + W++ M KRSAVG AAL D +YVCGGYDGV+SLNTVE Y P +
Sbjct: 350 RLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALEDCIYVCGGYDGVTSLNTVEVYYPKTN 409
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
W+ V M K+RSAGGV + YVYALGGHDGLSIFDSVERYD D W + PML +RC
Sbjct: 410 NWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSVERYDQNEDTWVKMAPMLNRRC 469
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA LN KIYVCGGY G FL+SVE YDP+TD WK++ MN RSRVAL ANMGKLWA
Sbjct: 470 RLGVATLNGKIYVCGGYCGNSFLRSVECYDPLTDTWKLVTPMNCKRSRVALTANMGKLWA 529
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGV 737
IGGYDG SNL TVEVYDP TD W F+ MCAH GGV
Sbjct: 530 IGGYDGESNLSTVEVYDPETDKWTFMPSMCAHSGGV 565
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312379911|gb|EFR26057.1| hypothetical protein AND_08118 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/509 (59%), Positives = 367/509 (72%), Gaps = 43/509 (8%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+EALINFAYSG V I +QNVQSLMV ASFLQ+ +V DACA FLK++FHP NVLGIRQFA
Sbjct: 18 ALEALINFAYSGVVKIDTQNVQSLMVGASFLQLNEVRDACAKFLKRKFHPQNVLGIRQFA 77
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DTL+C +L ++ + +F +V+ DEF+ L +E+ +++ R EL++ SEE +F A MR
Sbjct: 78 DTLSCSKL----NRVRRSHFSKVASGDEFLALSCDELIEVIGRDELNVKSEECIFAACMR 133
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVKH +RA LP +L+ +RLPLLSP +LAD VATE LI++SH+CRDL+DEARDFHLMP
Sbjct: 134 WVKHAQDKRAVHLPLILSNIRLPLLSPQFLADSVATEELIKTSHKCRDLLDEARDFHLMP 193
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR L+A +T PR ++V+G IFAVGGLTK
Sbjct: 194 ERRALVATARTRPRCFDFVVGLIFAVGGLTKN---------------------------- 225
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
G+S+STVE+++P W M EAM+MLRSRVGVAV +LYAFGG+NG+E
Sbjct: 226 -----------GESVSTVEIYNPTTKEWSMGEAMTMLRSRVGVAVTNGKLYAFGGFNGTE 274
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RLSTVE +DP + W++ + M KRSAVG AAL D +YVCGGYDGV+SL+TVE Y P D
Sbjct: 275 RLSTVEIYDPRQHRWSQGTAMHCKRSAVGVAALEDYVYVCGGYDGVTSLSTVERYCPKTD 334
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
W V M K+RSAGGV A YVYALGGHDGLSIFD+VERYDP TD WT V+ M +RC
Sbjct: 335 SWSTVAPMMKYRSAGGVAALGGYVYALGGHDGLSIFDTVERYDPFTDTWTKVRSMTNRRC 394
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA L NK+Y CGGYDG FL+SVE+YDP+ D W +IA MNV RSRVAL +NMGKLWA
Sbjct: 395 RLGVATLGNKLYACGGYDGNSFLRSVEVYDPVKDTWTLIAPMNVKRSRVALASNMGKLWA 454
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
IGGYDG SNL TVEVYDP T +W FVAPM
Sbjct: 455 IGGYDGESNLSTVEVYDPKTSTWTFVAPM 483
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|443702327|gb|ELU00416.1| hypothetical protein CAPTEDRAFT_151000 [Capitella teleta] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-167, Method: Compositional matrix adjust.
Identities = 299/523 (57%), Positives = 368/523 (70%), Gaps = 40/523 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+ L+ FAYSG V I S NVQ+L+V ASFLQMQ + DAC DF+K R HPNNVLGI+ FA
Sbjct: 81 ALSDLVTFAYSGSVQIDSMNVQNLLVGASFLQMQVIKDACCDFMKSRLHPNNVLGIKSFA 140
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
D C L +A DKY+Q +F EVS S+EF+ L + V I+ R +LH+ EEQVFEA +
Sbjct: 141 DQFMCRSLEDACDKYIQIHFMEVSKSEEFLSLDEDRVTAILARDQLHITGEEQVFEAAIN 200
Query: 342 WVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVK +S+R LP L+ VRLPLLSP +L+DRV E LI+ S +CRDL+DEARDFHLMP
Sbjct: 201 WVKQQSSKRMHHLPNLVVHVRLPLLSPQFLSDRVGQEELIKGSLKCRDLLDEARDFHLMP 260
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA 461
ERR L KT PR C V+G I+AVGGLT +
Sbjct: 261 ERRAQLQTFKTRPRCCTDVVGVIYAVGGLTSS---------------------------- 292
Query: 462 VISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
GDS+STVE +DP++G+WQMA+ MS LRSRVG+AV+K LYA GGY+G E
Sbjct: 293 -----------GDSISTVEFYDPIIGKWQMAKPMSTLRSRVGIAVLKGHLYAIGGYDGQE 341
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581
RL+TVE FDPV+ W V+PM KRSA+GA AL +LYVCGGYDGV+SL++VE Y+P +
Sbjct: 342 RLNTVEVFDPVKLSWGLVAPMICKRSALGAGALGGELYVCGGYDGVTSLSSVEKYDPVSN 401
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641
+W +V +M +HRSA GV + ++YALGGHDGLSIFDS ER+D +W +V ML+KRC
Sbjct: 402 KWVMVSNMIRHRSAAGVCVLNGHIYALGGHDGLSIFDSAERFD-GNGQWKAVASMLSKRC 460
Query: 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
RLGVA+LN K+Y GGYDG +FL+ VE YDP TD W +A MNV RSRVALV N GKL+A
Sbjct: 461 RLGVASLNGKLYAAGGYDGNVFLKQVECYDPNTDSWCFVAPMNVKRSRVALVTNCGKLYA 520
Query: 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744
IGGYDGVSNL +VEVYDPS ++W F A MCAHEGGVGVGV+P+
Sbjct: 521 IGGYDGVSNLNSVEVYDPSFNTWNFSASMCAHEGGVGVGVVPV 563
|
Source: Capitella teleta Species: Capitella teleta Genus: Capitella Family: Capitellidae Order: Capitellida Class: Polychaeta Phylum: Annelida Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 748 | ||||||
| FB|FBgn0037978 | 575 | KLHL18 [Drosophila melanogaste | 0.617 | 0.803 | 0.455 | 1.6e-104 | |
| UNIPROTKB|Q1EG90 | 708 | Klhl5 "Myocardial ischemic pre | 0.621 | 0.656 | 0.366 | 6.5e-104 | |
| UNIPROTKB|Q96PQ7 | 755 | KLHL5 "Kelch-like protein 5" [ | 0.621 | 0.615 | 0.362 | 7.4e-103 | |
| UNIPROTKB|B0WWP2 | 582 | dbo "Kelch-like protein diablo | 0.621 | 0.798 | 0.383 | 2.5e-102 | |
| UNIPROTKB|Q16RL8 | 589 | dbo "Kelch-like protein diablo | 0.621 | 0.789 | 0.383 | 2.5e-102 | |
| ZFIN|ZDB-GENE-040426-1935 | 591 | klhl20 "kelch-like 20 (Drosoph | 0.618 | 0.783 | 0.394 | 3.2e-102 | |
| UNIPROTKB|F1NGH0 | 617 | KLHL20 "Kelch-like protein 20" | 0.618 | 0.750 | 0.390 | 6.6e-102 | |
| UNIPROTKB|F1NMM8 | 609 | KLHL20 "Kelch-like protein 20" | 0.618 | 0.760 | 0.390 | 6.6e-102 | |
| UNIPROTKB|Q08DK3 | 609 | KLHL20 "Kelch-like protein 20" | 0.618 | 0.760 | 0.390 | 8.4e-102 | |
| UNIPROTKB|F1PCW9 | 609 | KLHL20 "Uncharacterized protei | 0.618 | 0.760 | 0.390 | 8.4e-102 |
| FB|FBgn0037978 KLHL18 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1035 (369.4 bits), Expect = 1.6e-104, P = 1.6e-104
Identities = 214/470 (45%), Positives = 290/470 (61%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
A+E+LIN+ YSG+V I +QNVQ+LMV ASFLQ+ V DACA FL RFHP+NVLGIR FA
Sbjct: 91 ALESLINYVYSGQVRIDNQNVQNLMVGASFLQLSNVRDACASFLISRFHPHNVLGIRTFA 150
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
D++ C QL +AADKY+ Q F +VS S+EF+ L ++ ++++R EL++ +EE +FEA M+
Sbjct: 151 DSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQLLELMRRDELNVRTEEVIFEACMK 210
Query: 342 WVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
WVK+ + +LADRVA E LIRSSH+CRDL+DEA+DFHLMP
Sbjct: 211 WVKYAEDKRSELFPQVLAAVRLPLLSPQFLADRVAREELIRSSHQCRDLLDEAKDFHLMP 270
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSN- 460
ERR LL +T R + G I+AVGGL G+S+STVE++DPL +W+M E+ ++
Sbjct: 271 ERRGLLQSFRTRQRSGEFFTGQIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRS 330
Query: 461 ----AVISTKSCLT---KAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYA 513
AV++ K + LSTVEV+DP +W AM RS VGVA + + +Y
Sbjct: 331 RVGVAVLNGKLYAFGGFNGTERLSTVEVYDPRKNKWSQGCAMLCKRSAVGVAALDDCIYV 390
Query: 514 FGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTV 573
GGY+G L+TVE + P W V+ M RSA G LN +Y GG+DG+S ++V
Sbjct: 391 CGGYDGVTSLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSV 450
Query: 574 ECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633
E Y+ +D W + M R GV + +Y GG+ G S SVE YDP+TD W V
Sbjct: 451 ERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLV 510
Query: 634 KPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM 683
PM KR R+ +AA K++ GGYDG L +VE+YDP TD+W + M
Sbjct: 511 TPMNCKRSRVALAANMGKLWAIGGYDGESNLSTVEVYDPETDKWTFMPPM 560
|
|
| UNIPROTKB|Q1EG90 Klhl5 "Myocardial ischemic preconditioning associated protein 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 845 (302.5 bits), Expect = 6.5e-104, Sum P(2) = 6.5e-104
Identities = 177/483 (36%), Positives = 265/483 (54%)
Query: 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL 284
+LI +AY+GR+ + +N++ L+ A LQ+ +V +AC FL K+ HP+N LGIR FAD
Sbjct: 226 SLIQYAYTGRLELKEENIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQ 285
Query: 285 NCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK 344
C L + A Y ++F EV + EF+ L NE+ ++ ++++ +EE + A++ WV+
Sbjct: 286 GCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVR 345
Query: 345 HNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLMPERR 404
H+ + +LAD + AL R EC+ L+ EA +HL+PERR
Sbjct: 346 HDLEQRQKDLSKLLAYIRLPLLAPQFLAD-MENNALFRDDIECQKLIMEAMKYHLLPERR 404
Query: 405 FLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET-----LS 459
+L +T PR+ +G +FAVGG+ + S +E +D W
Sbjct: 405 PMLQSPRTKPRKST--VGTLFAVGGMDSTKGATS-IEKYDLRTNMWTPVANMNGRRLQFG 461
Query: 460 NAVISTKSCLTKAGD---SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGG 516
AV+ K + D +L+TVE ++P W + MS R +GVAV++ +YA GG
Sbjct: 462 VAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGG 521
Query: 517 YNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
++G L+TVE +DP R WN V+ M RS VG A L+ KLY GG DG S L +VEC+
Sbjct: 522 HDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECF 581
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS------IFDSVERYDPKTDEW 630
+P ++W + M K R GV ++ +YA+GGHD + + D VERYDPKTD W
Sbjct: 582 DPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDCVERYDPKTDMW 641
Query: 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV 690
T+V M R +GV L +K+Y GGYDG +L VE YDP T+EW +A + + R+
Sbjct: 642 TAVASMSISRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQVAPLCLGRAGA 701
Query: 691 ALV 693
+V
Sbjct: 702 CVV 704
|
|
| UNIPROTKB|Q96PQ7 KLHL5 "Kelch-like protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 175/483 (36%), Positives = 264/483 (54%)
Query: 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL 284
+LI +AY+GR+ + N++ L+ A LQ+ +V +AC FL K+ HP+N LGIR FAD
Sbjct: 273 SLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQ 332
Query: 285 NCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK 344
C L + A Y ++F EV + EF+ L +E+ ++ ++++ +EE + A++ WV+
Sbjct: 333 GCTDLHKVAHNYTMEHFMEVIRNQEFVLLPASEIAKLLASDDMNIPNEETILNALLTWVR 392
Query: 345 HNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLMPERR 404
H+ + +LAD + L R EC+ L+ EA +HL+PERR
Sbjct: 393 HDLEQRRKDLSKLLAYIRLPLLAPQFLAD-MENNVLFRDDIECQKLIMEAMKYHLLPERR 451
Query: 405 FLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET-----LS 459
+L +T PR+ +G +FAVGG+ + S +E +D W
Sbjct: 452 PMLQSPRTKPRKST--VGTLFAVGGMDSTKGATS-IEKYDLRTNMWTPVANMNGRRLQFG 508
Query: 460 NAVISTKSCLTKAGD---SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGG 516
AV+ K + D +L+TVE ++P W + MS R +GVAV++ +YA GG
Sbjct: 509 VAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGG 568
Query: 517 YNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
++G L+TVE +DP R WN V+ M RS VG A L+ KLY GG DG S L +VEC+
Sbjct: 569 HDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECF 628
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS------IFDSVERYDPKTDEW 630
+P ++W + M K R GV ++ +YA+GGHD + + D VERYDPKTD W
Sbjct: 629 DPHTNKWTLCAQMSKRRGGVGVTTWNGLLYAIGGHDAPASNLTSRLSDCVERYDPKTDMW 688
Query: 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV 690
T+V M R +GV L +K+Y GGYDG +L +VE YDP T+EW +A + + R+
Sbjct: 689 TAVASMSISRDAVGVCLLGDKLYAVGGYDGQAYLNTVEAYDPQTNEWTQVAPLCLGRAGA 748
Query: 691 ALV 693
+V
Sbjct: 749 CVV 751
|
|
| UNIPROTKB|B0WWP2 dbo "Kelch-like protein diablo" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 182/475 (38%), Positives = 275/475 (57%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
AME LI+F Y+ + + NVQ+L+ A LQ+ ++ D C +FLK++ P N LGIR FA
Sbjct: 91 AMELLIDFCYTSHIVVEESNVQTLLPAACLLQLAEIQDICCEFLKRQLDPTNCLGIRAFA 150
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DT +C +L ADK+ Q F EV S+EF+ L V ++ DI+ EL++ SEEQVF AVM
Sbjct: 151 DTHSCRELLRIADKFTQHNFQEVMESEEFLLLPVGQLVDIICSDELNVRSEEQVFNAVMA 210
Query: 342 WVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
W+K+N +E +L V ++ L+RS CRDLVDEA+++ L+P
Sbjct: 211 WLKYNVAERRQHLAQVLQHVRMPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLP 270
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAE--EETLS 459
+ R L+ G +T PR+ +FAVGG +GD++++VE FDP W+M +
Sbjct: 271 QERPLMQGPRTRPRKPTRRGEVLFAVGGWC-SGDAIASVERFDPETADWKMVAPMSKRRC 329
Query: 460 NAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMKNRLY 512
++ + L A G S L+++E +DP +W A + R+ VGVAV+ LY
Sbjct: 330 GVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLY 389
Query: 513 AFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNT 572
A GG +G + L+ VE +DP W+KV+PM +R V A L LY GG DG LNT
Sbjct: 390 AVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVAVLGGYLYAIGGSDGQCPLNT 449
Query: 573 VECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632
VE Y+P +++W V M R G F++++YA+GG D S ERY+P T+ W+
Sbjct: 450 VERYDPRQNKWCAVSPMSTRRKHLGCAVFNNFIYAVGGRDDCMELSSAERYNPHTNSWSP 509
Query: 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+ M ++R +G+A +N ++Y GG+DG +L+++E+YDP T++W++ MN R
Sbjct: 510 IVAMTSRRSGVGLAVVNGQLYAVGGFDGTAYLKTIEVYDPETNQWRLCGCMNYRR 564
|
|
| UNIPROTKB|Q16RL8 dbo "Kelch-like protein diablo" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 2.5e-102, Sum P(2) = 2.5e-102
Identities = 182/475 (38%), Positives = 275/475 (57%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
AME LI+F Y+ + + NVQ+L+ A LQ+ ++ D C +FLK++ P N LGIR FA
Sbjct: 91 AMELLIDFCYTSHIVVEESNVQTLLPAACLLQLAEIQDICCEFLKRQLDPTNCLGIRAFA 150
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
DT +C +L ADK+ Q F EV S+EF+ L V ++ DI+ EL++ SEEQVF AVM
Sbjct: 151 DTHSCRELLRIADKFTQHNFQEVMESEEFLLLPVGQLVDIICSDELNVRSEEQVFNAVMA 210
Query: 342 WVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLMP 401
W+K+N +E +L V ++ L+RS CRDLVDEA+++ L+P
Sbjct: 211 WLKYNVAERRQHLAQVLQHVRMPLLSPKFLVGTVGSDLLVRSDEACRDLVDEAKNYLLLP 270
Query: 402 ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAE--EETLS 459
+ R L+ G +T PR+ +FAVGG +GD++++VE FDP W+M +
Sbjct: 271 QERPLMQGPRTRPRKPTRRGEVLFAVGGWC-SGDAIASVERFDPETADWKMVAPMSKRRC 329
Query: 460 NAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMKNRLY 512
++ + L A G S L+++E +DP +W A + R+ VGVAV+ LY
Sbjct: 330 GVGVAVLNDLLYAVGGHDGQSYLNSIERYDPQTNQWSCDVAPTTSCRTSVGVAVLDGFLY 389
Query: 513 AFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNT 572
A GG +G + L+ VE +DP W+KV+PM +R V A L LY GG DG LNT
Sbjct: 390 AVGGQDGVQCLNHVERYDPKENKWSKVAPMTTRRLGVAVAVLGGYLYAIGGSDGQCPLNT 449
Query: 573 VECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632
VE Y+P +++W V M R G F++++YA+GG D S ERY+P T+ W+
Sbjct: 450 VERYDPRQNKWCAVSPMSTRRKHLGCAVFNNFIYAVGGRDDCMELSSAERYNPHTNSWSP 509
Query: 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+ M ++R +G+A +N ++Y GG+DG +L+++E+YDP T++W++ MN R
Sbjct: 510 IVAMTSRRSGVGLAVVNGQLYAVGGFDGTAYLKTIEVYDPETNQWRLCGCMNYRR 564
|
|
| ZFIN|ZDB-GENE-040426-1935 klhl20 "kelch-like 20 (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.2e-102, Sum P(2) = 3.2e-102
Identities = 189/479 (39%), Positives = 276/479 (57%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ +VT+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 99 RAMELLIDFAYTSQVTVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 158
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 159 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 218
Query: 341 RWVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ E +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 219 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 278
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-- 455
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W+M
Sbjct: 279 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEWRMVASMS 334
Query: 456 ETLSNAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMK 508
+ +S L A G S L++VE +DP +W A S R+ VGVAV+
Sbjct: 335 KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLG 394
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
LYA GG +G L+ VE +DP W +V+ M +R V A L LY GG DG S
Sbjct: 395 GYLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTS 454
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
LNTVE Y P +++W V M R G + +Y++GG D + S ERY+P+T+
Sbjct: 455 PLNTVERYNPQENRWHTVAPMGTRRKHLGCAVYQDMIYSVGGRDDTTELSSAERYNPRTN 514
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+W+ V M ++R +G+A +N ++ GG+DG +L+++E+YDP + W++ MN R
Sbjct: 515 QWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVYDPDANTWRLYGGMNYRR 573
|
|
| UNIPROTKB|F1NGH0 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 187/479 (39%), Positives = 276/479 (57%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 125 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 184
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 185 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 244
Query: 341 RWVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ E +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 245 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 304
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-- 455
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W+M
Sbjct: 305 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEWRMVASMS 360
Query: 456 ETLSNAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMK 508
+ +S L A G S L++VE +DP +W A S R+ VGVAV+
Sbjct: 361 KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLG 420
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
LYA GG +G L+ VE +DP W +V+ M +R V A L LY GG DG S
Sbjct: 421 GYLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTS 480
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
LNTVE Y P +++W + M R G + +YA+GG D + S ERY+P+T+
Sbjct: 481 PLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTN 540
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+W+ V M ++R +G+A +N ++ GG+DG +L+++E++DP + W++ MN R
Sbjct: 541 QWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRR 599
|
|
| UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 6.6e-102, Sum P(2) = 6.6e-102
Identities = 187/479 (39%), Positives = 276/479 (57%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ E +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-- 455
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W+M
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEWRMVASMS 352
Query: 456 ETLSNAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMK 508
+ +S L A G S L++VE +DP +W A S R+ VGVAV+
Sbjct: 353 KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLG 412
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
LYA GG +G L+ VE +DP W +V+ M +R V A L LY GG DG S
Sbjct: 413 GYLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTS 472
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
LNTVE Y P +++W + M R G + +YA+GG D + S ERY+P+T+
Sbjct: 473 PLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTN 532
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+W+ V M ++R +G+A +N ++ GG+DG +L+++E++DP + W++ MN R
Sbjct: 533 QWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRR 591
|
|
| UNIPROTKB|Q08DK3 KLHL20 "Kelch-like protein 20" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 187/479 (39%), Positives = 276/479 (57%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ E +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-- 455
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W+M
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEWRMVASMS 352
Query: 456 ETLSNAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMK 508
+ +S L A G S L++VE +DP +W A S R+ VGVAV+
Sbjct: 353 KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLG 412
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
LYA GG +G L+ VE +DP W +V+ M +R V A L LY GG DG S
Sbjct: 413 GFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTS 472
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
LNTVE Y P +++W + M R G + +YA+GG D + S ERY+P+T+
Sbjct: 473 PLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTN 532
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+W+ V M ++R +G+A +N ++ GG+DG +L+++E++DP + W++ MN R
Sbjct: 533 QWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRR 591
|
|
| UNIPROTKB|F1PCW9 KLHL20 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 886 (316.9 bits), Expect = 8.4e-102, Sum P(2) = 8.4e-102
Identities = 187/479 (39%), Positives = 276/479 (57%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
RAME LI+FAY+ ++T+ NVQ+L+ A LQ+ ++ +AC +FLK++ P+N LGIR F
Sbjct: 117 RAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAF 176
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
ADT +C +L ADK+ Q F EV S+EF+ L N++ DI+ EL++ SEEQVF AVM
Sbjct: 177 ADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVM 236
Query: 341 RWVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WVK++ E +L V ++ LI+S ECRDLVDEA+++ L+
Sbjct: 237 AWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLL 296
Query: 401 PERRFLLAGEKTTPR---RCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-- 455
P+ R L+ G +T PR RC V+ FAVGG +GD++S+VE +DP W+M
Sbjct: 297 PQERPLMQGPRTRPRKPIRCGEVL---FAVGGWC-SGDAISSVERYDPQTNEWRMVASMS 352
Query: 456 ETLSNAVISTKSCLTKA-----GDS-LSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMK 508
+ +S L A G S L++VE +DP +W A S R+ VGVAV+
Sbjct: 353 KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDVAPTSTCRTSVGVAVLG 412
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
LYA GG +G L+ VE +DP W +V+ M +R V A L LY GG DG S
Sbjct: 413 GFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGTS 472
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
LNTVE Y P +++W + M R G + +YA+GG D + S ERY+P+T+
Sbjct: 473 PLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELSSAERYNPRTN 532
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+W+ V M ++R +G+A +N ++ GG+DG +L+++E++DP + W++ MN R
Sbjct: 533 QWSPVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLKTIEVFDPDANTWRLYGGMNYRR 591
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O94889 | KLH18_HUMAN | No assigned EC number | 0.4086 | 0.6363 | 0.8292 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 748 | |||
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 3e-62 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 6e-38 | |
| pfam07707 | 101 | pfam07707, BACK, BTB And C-terminal Kelch | 3e-35 | |
| smart00875 | 101 | smart00875, BACK, BTB And C-terminal Kelch | 2e-32 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 3e-28 | |
| pfam00651 | 101 | pfam00651, BTB, BTB/POZ domain | 1e-25 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 1e-21 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-18 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 3e-16 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 1e-14 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 3e-14 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 2e-13 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-13 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 1e-12 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-12 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-11 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 7e-11 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 2e-10 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 3e-10 | |
| pfam00651 | 101 | pfam00651, BTB, BTB/POZ domain | 2e-09 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 2e-09 | |
| PHA02790 | 480 | PHA02790, PHA02790, Kelch-like protein; Provisiona | 3e-09 | |
| smart00225 | 97 | smart00225, BTB, Broad-Complex, Tramtrack and Bric | 4e-09 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 9e-09 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 1e-08 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-07 | |
| PRK14131 | 376 | PRK14131, PRK14131, N-acetylneuraminic acid mutaro | 5e-07 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 7e-07 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 2e-06 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 2e-06 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 5e-06 | |
| PHA03098 | 534 | PHA03098, PHA03098, kelch-like protein; Provisiona | 1e-05 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 3e-05 | |
| PHA02713 | 557 | PHA02713, PHA02713, hypothetical protein; Provisio | 4e-05 | |
| smart00612 | 47 | smart00612, Kelch, Kelch domain | 5e-05 | |
| pfam07646 | 48 | pfam07646, Kelch_2, Kelch motif | 6e-05 | |
| TIGR03548 | 323 | TIGR03548, mutarot_permut, cyclically-permuted mut | 1e-04 | |
| TIGR03547 | 346 | TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | 2e-04 | |
| PLN02153 | 341 | PLN02153, PLN02153, epithiospecifier protein | 3e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 3e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 4e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 5e-04 | |
| COG3055 | 381 | COG3055, COG3055, Uncharacterized protein conserve | 5e-04 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 7e-04 | |
| pfam13418 | 49 | pfam13418, Kelch_4, Galactose oxidase, central dom | 8e-04 | |
| pfam13415 | 48 | pfam13415, Kelch_3, Galactose oxidase, central dom | 0.001 | |
| pfam01344 | 46 | pfam01344, Kelch_1, Kelch motif | 0.003 | |
| pfam13964 | 50 | pfam13964, Kelch_6, Kelch motif | 0.004 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 3e-62
Identities = 113/498 (22%), Positives = 219/498 (43%), Gaps = 25/498 (5%)
Query: 196 DACADFLKKRFHPNNVLDYYVL--FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQ 253
+ +++ KK F NN + + + +I + Y+G++ I S NV+ ++ +A++L
Sbjct: 31 SSSSEYFKKMFK-NNFKENEINLNIDYDSFNEVIKYIYTGKINITSNNVKDILSIANYLI 89
Query: 254 MQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGL 313
+ + + C +++ K NN + I +F+ C +L AA Y++ + +FI L
Sbjct: 90 IDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYL 149
Query: 314 GVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLAD 373
NE+ I+ +L++ SE+ V E +++W+ + + + +L +R+ LS +
Sbjct: 150 SKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKK 209
Query: 374 RVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKA 433
+ I+ + + ++ + ++ L K PR + + +
Sbjct: 210 LKRWKLRIKKK---KIVFNKRCIKIIYSKKYNL---NKILPRSSTFGSIIYIHIT---MS 260
Query: 434 GDSLSTVEVFDPLVGRWQMAEE--------ETLSNAVISTKSCLTKAGDSLSTVEVFDPL 485
+ + + + PL + + L+N + + K S+++V +D
Sbjct: 261 IFTYNYITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIG-GMNKNNLSVNSVVSYDTK 319
Query: 486 VGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK 545
W + R GV V NR+Y GG S L+TVE + P W + P+ F
Sbjct: 320 TKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP 379
Query: 546 RSAVGAAALNDKLYVCGG-YDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSY 604
R +N+ +YV GG L TVEC+ + ++W + G I D
Sbjct: 380 RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGK 439
Query: 605 VYALGGH---DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661
+Y +GG D + +++ VE Y+P T++WT + + R + NNKIYV GG
Sbjct: 440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYE 499
Query: 662 IFLQSVEMYDPITDEWKM 679
++ +E+YD T+ W +
Sbjct: 500 YYINEIEVYDDKTNTWTL 517
|
Length = 534 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-38
Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 5/238 (2%)
Query: 503 GVAVMKNRLYAFGGYNGS-ERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVC 561
G V+ N +Y GG N + +++V +D + WNKV + + R G N+++YV
Sbjct: 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVI 348
Query: 562 GGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG-HDGLSIFDSV 620
GG SLNTVE ++P + +WR + R V+ ++ +Y +GG + +V
Sbjct: 349 GGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTV 408
Query: 621 ERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGY---DGAIFLQSVEMYDPITDEW 677
E + T++W+ P+ + KIYV GG D VE Y+P+T++W
Sbjct: 409 ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468
Query: 678 KMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEG 735
++S+N R +L K++ +GG + +EVYD T++W G
Sbjct: 469 TELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIG 526
|
Length = 534 |
| >gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 3e-35
Identities = 50/101 (49%), Positives = 71/101 (70%)
Query: 274 VLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEE 333
LGI +FADT C +L+E A +++ + F EVS S+EF+ L ++ +++ EL++ SEE
Sbjct: 1 CLGIYRFADTYGCEELAEVALRFILKNFLEVSKSEEFLELSKEQLLELLSSDELNVPSEE 60
Query: 334 QVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADR 374
+VFEAV++WVKH+ R LP LL+AVRLPLLSP YL D
Sbjct: 61 EVFEAVIKWVKHDVENRKKHLPELLSAVRLPLLSPEYLLDV 101
|
This domain is found associated with pfam00651 and pfam01344. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. This family appears to be closely related to the BTB domain (Finn RD, personal observation). Length = 101 |
| >gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-32
Identities = 48/101 (47%), Positives = 70/101 (69%)
Query: 274 VLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEE 333
LGIR+FAD +L+E A +++ Q F EVS S+EF+ L + ++ +++ +L++ SEE
Sbjct: 1 CLGIRRFADAHGLEELAEKALRFILQNFSEVSSSEEFLELPLEQLLELLSSDDLNVSSEE 60
Query: 334 QVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADR 374
+VFEAV+RWVKH+ +R LP LL VRLPLLSP YL +
Sbjct: 61 EVFEAVLRWVKHDPEKRREHLPELLEHVRLPLLSPDYLLEV 101
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. Length = 101 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-28
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 13/216 (6%)
Query: 517 YNGSERLSTVEEFDPVRRVWNKVS---PMCFKRSAVGAAALNDKLYVCGGYDG-VSSLNT 572
+ + + P+ + + CF G+ LN+ +Y GG + S+N+
Sbjct: 258 TMSIFTYNYITNYSPLSEINTIIDIHYVYCF-----GSVVLNNVIYFIGGMNKNNLSVNS 312
Query: 573 VECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632
V Y+ W V + R GV F++ +Y +GG ++VE + P +W
Sbjct: 313 VVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372
Query: 633 VKPMLTKRCRLGVAALNNKIYVCGG-YDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA 691
P++ R V +NN IYV GG L++VE + T++W + + +
Sbjct: 373 EPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC 432
Query: 692 LVANMGKLWAIGGY---DGVSNLPTVEVYDPSTDSW 724
+ + GK++ IGG D + VE Y+P T+ W
Sbjct: 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468
|
Length = 534 |
| >gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 38/139 (27%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ E+R G+LCDVT+ V D+ F H+ VLAA PYF+A+FT +
Sbjct: 1 LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKEV-------------- 46
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
EIT++ + EAL+ F+Y+G++ I +NV L+
Sbjct: 47 ------------------------EITLEDVSPEDFEALLEFIYTGKLEITEENVDDLLA 82
Query: 185 VASFLQMQKVADACADFLK 203
+A LQ+ + D C +FL
Sbjct: 83 LADKLQIPALIDKCEEFLI 101
|
The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-21
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 34/130 (26%)
Query: 76 DVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQ 135
DVT+ V + F H+ VLAA S PYF+
Sbjct: 1 DVTLVVGGKKFHAHKAVLAA--------------HS--------------------PYFK 26
Query: 136 AMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVA 195
A+F+SD ES + EI + + AL+NF+Y+G++ + +NV+ L+ +A +LQ+ +
Sbjct: 27 ALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADYLQIPGLV 86
Query: 196 DACADFLKKR 205
+ C +FL K
Sbjct: 87 ELCEEFLLKL 96
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-18
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 20/196 (10%)
Query: 414 PRRCNYVM---GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL----SNAVISTK 466
PR+ V I+ +GG+ SL+TVE + P +W+ EE L N +
Sbjct: 332 PRKNPGVTVFNNRIYVIGGI-YNSISLNTVESWKPGESKWR--EEPPLIFPRYNPCVVNV 388
Query: 467 SCL-------TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY-- 517
+ L +K + L TVE F +W + + ++Y GG
Sbjct: 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISY 448
Query: 518 -NGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576
+ + + VE ++PV W ++S + F R N+K+YV GG +N +E Y
Sbjct: 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVY 508
Query: 577 EPDKDQWRIVKSMQKH 592
+ + W + K
Sbjct: 509 DDKTNTWTLFCKFPKV 524
|
Length = 534 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 3e-16
Identities = 22/47 (46%), Positives = 29/47 (61%)
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697
KIYV GG+DG L+SVE+YDP T++W + SM RS + G
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-14
Identities = 24/46 (52%), Positives = 27/46 (58%)
Query: 639 KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN 684
R GV L KIYV GGYDG L SVE+YDP T+ W + SM
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-14
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 605 VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
+Y +GG DG SVE YDP+T++WT + M T R GVA +N
Sbjct: 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-13
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602
K+YV GG+DG L +VE Y+P+ ++W + SM RS GV +
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-13
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 545 KRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
RS G L K+YV GGYDG SL++VE Y+P+ + W + SM
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSMP 46
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 1e-12
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 505 AVMKNRLYAFGGYN-GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGG 563
A++ N + GGYN + L+ V + + ++ ++ PM R A ++D +Y GG
Sbjct: 300 AIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGG 359
Query: 564 YDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG------------- 610
+G + T+ECY D+W+++ M S+ G+ D Y+Y +GG
Sbjct: 360 QNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419
Query: 611 -----HDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYV 654
+ + V RYD + W ++ T R GV + + IYV
Sbjct: 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYV 468
|
Length = 557 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-12
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636
RS GV+ +Y +GG+DG SVE YDP+T+ W+ + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-11
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM 542
RS GV V+ ++Y GGY+G + LS+VE +DP W+K+ M
Sbjct: 2 RSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-11
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556
++Y GG++G +RL +VE +DP W + M RS G A +N
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-10
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 686 MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
RS +V GK++ IGGYDG +L +VEVYDP T++W+ + M
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDGGQSLSSVEVYDPETNTWSKLPSM 45
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 3e-10
Identities = 57/219 (26%), Positives = 92/219 (42%), Gaps = 23/219 (10%)
Query: 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSL 570
+Y GG+ +E + + + W + PM R N+KLYV GG +S
Sbjct: 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTS- 332
Query: 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYD-PKTDE 629
VE + W + S+ K R V + ++ +Y +GGH S D+ Y P D+
Sbjct: 333 --VERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGH---SETDTTTEYLLPNHDQ 387
Query: 630 W----TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV 685
W ++ P K C L ++++ G ++ E Y ++ W +I
Sbjct: 388 WQFGPSTYYPHY-KSCAL---VFGRRLFLVG--------RNAEFYCESSNTWTLIDDPIY 435
Query: 686 MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724
R L+ KL IGG+ S + T+EVY+ T SW
Sbjct: 436 PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474
|
Length = 480 |
| >gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-09
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 197 ACADFLKKRFHPNNVLDYYVL-FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQ 255
AC+ + K F N ++ + S EAL+ F Y+G++ I +NV L+ +A LQ+
Sbjct: 31 ACSPYFKALFTGNKEVEITLEDVSPEDFEALLEFIYTGKLEITEENVDDLLALADKLQIP 90
Query: 256 KVADACADFLK 266
+ D C +FL
Sbjct: 91 ALIDKCEEFLI 101
|
The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 2e-09
Identities = 61/257 (23%), Positives = 100/257 (38%), Gaps = 59/257 (22%)
Query: 484 PLVGRWQMAEAMSM---LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS 540
L+G+W E LR G+A + N++Y+FGG EF P +
Sbjct: 148 KLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGG-----------EFTPNQ------- 189
Query: 541 PMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK--HRSAGGV 598
++ LYV ++ + W I + H S GV
Sbjct: 190 ------------PIDKHLYV---------------FDLETRTWSISPATGDVPHLSCLGV 222
Query: 599 --IAFDSYVYALGGHDGLSIFDSVERYDPKTDEW---TSVKPMLTKRCRLGVAALNNKIY 653
++ S +Y GG D ++ +D T+EW T V+ T R +AA +Y
Sbjct: 223 RMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVY 282
Query: 654 VCGGYDGAIFLQSVEMYDPITDEWKMIASMN---VMRSRVALVANMGKLWAIGGYDGVSN 710
V GG L++++ Y+ + +W ++ +R L GK+W + G++G
Sbjct: 283 VFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE- 341
Query: 711 LPTVEVYDPSTDSWAFV 727
+ V YDP D W V
Sbjct: 342 VDDVHYYDPVQDKWTQV 358
|
Length = 470 |
| >gnl|CDD|165153 PHA02790, PHA02790, Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 3e-09
Identities = 88/467 (18%), Positives = 183/467 (39%), Gaps = 72/467 (15%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNN-----VLG 276
++ +++ ++Y+G+V I S NV +L+ + ++ + C +F+ + F ++G
Sbjct: 73 SLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMG 132
Query: 277 IRQFADTLNCLQLSEAADKYVQQYFHEVS--MSDEFIGLGVNEVNDIVKRSELHLMSEEQ 334
I L C ++ ++F E+ + D F L + I++ EL++ E+
Sbjct: 133 IEYGLSNLLC-----HTKDFIAKHFLELEDDIIDNFDYLSMKL---ILESDELNVPDEDY 184
Query: 335 VFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEA 394
V + V++W + L + +R LSP R + + ++D
Sbjct: 185 VVDFVIKWYMKRRNRLGNLLLLIKNVIRSNYLSP-------------RGINNVKWILDCT 231
Query: 395 RDFHL--MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQM 452
+ FH P + + + P + ++ IF + T G+ + L+G W
Sbjct: 232 KIFHCDKQPRKSYKYPFIEY-PMNMDQII-DIFHMCTSTHVGEVVY-------LIGGWMN 282
Query: 453 AEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLY 512
E + N I+ + ++ W M+ R N+LY
Sbjct: 283 NE---IHNNAIAV-NYISN----------------NWIPIPPMNSPRLYASGVPANNKLY 322
Query: 513 AFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNT 572
GG ++VE + W + + R A++N+ +YV GG+ + T
Sbjct: 323 VVGGLPNP---TSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDT--T 377
Query: 573 VECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632
E P+ DQW+ S + F ++ +G + E Y ++ WT
Sbjct: 378 TEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--------RNAEFYCESSNTWTL 429
Query: 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679
+ + R + ++NK+ + GG+ ++ ++E+Y+ T W +
Sbjct: 430 IDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNI 476
|
Length = 480 |
| >gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-09
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 197 ACADFLKKRFHPNNVLD-----YYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASF 251
A + + K F + Y S AL+NF Y+G++ + +NV+ L+ +A +
Sbjct: 20 AHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADY 79
Query: 252 LQMQKVADACADFLKKR 268
LQ+ + + C +FL K
Sbjct: 80 LQIPGLVELCEEFLLKL 96
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 14/190 (7%)
Query: 481 VFDPLVGRWQMAEAMSMLR--SRVGVAVMK--NRLYAFGGYNGSERLSTVEEFDPVRRVW 536
VFD W ++ A + S +GV ++ + LY FGG + S + + FD W
Sbjct: 197 VFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEW 256
Query: 537 NKVSPM---CFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH- 592
++P+ RS AA + +YV GG + L T++ Y +W +
Sbjct: 257 KLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSF 316
Query: 593 --RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGV---AA 647
R G+ V+ + G +G + D V YDP D+WT V+ + V AA
Sbjct: 317 SIRGGAGLEVVQGKVWVVYGFNGCEV-DDVHYYDPVQDKWTQVETFGVRPSERSVFASAA 375
Query: 648 LNNKIYVCGG 657
+ I + GG
Sbjct: 376 VGKHIVIFGG 385
|
Length = 470 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-08
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
K++ +GG+DG L +VEVYDP T+ W + M G GV VI
Sbjct: 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVI 45
|
Length = 47 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 640 RCRLGVAALNNKIYVCGGY-DGAIFLQSVEMYDPITDEWKMIASMNVMR 687
R ++ KIYV GGY +G+ V +YDP T W+ + + R
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 41/136 (30%), Positives = 58/136 (42%), Gaps = 21/136 (15%)
Query: 541 PMCFKRSAVGAAAL-NDKLYVCGGYDGVS--SLNTVECYEPDKDQWRIVKSMQKHRSAGG 597
P+ FK G A+ N+ +YV G G S L+ P K W + +
Sbjct: 26 PVPFKN---GTGAIDNNTVYVGLGSAGTSWYKLDL---NAPSK-GWTKIAAFPGGPREQA 78
Query: 598 VIAF-DSYVYALGG-----HDG-LSIFDSVERYDPKTDEWTSVKPMLTKRCRLG---VAA 647
V AF D +Y GG +G +FD V +YDPKT+ W + + G V+
Sbjct: 79 VAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKL-DTRSPVGLAGHVAVSL 137
Query: 648 LNNKIYVCGGYDGAIF 663
N K Y+ GG + IF
Sbjct: 138 HNGKAYITGGVNKNIF 153
|
Length = 376 |
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 482 FDPLVGRWQM---AEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK 538
FD W++ E RS +A + +Y FGG + + RL T++ ++ V + W
Sbjct: 249 FDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFH 308
Query: 539 VSP---MCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSA 595
S R G + K++V G++G ++ V Y+P +D+W V++ S
Sbjct: 309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSE 367
Query: 596 GGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626
V A A+G H + IF DP
Sbjct: 368 RSVFA----SAAVGKH--IVIFGGEIAMDPL 392
|
Length = 470 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 635 PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA 694
PM+ RCR +A +++ IY GG +G +++E Y D+WKM+ M + S +
Sbjct: 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV 396
Query: 695 NMGKLWAIGG 704
++ IGG
Sbjct: 397 LDQYIYIIGG 406
|
Length = 557 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 592 HRSAGGVIAFDSYVYALGG-HDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640
R+ ++ +Y GG +G + V YDP+T W + P+ T R
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPTPR 50
|
Length = 50 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 5e-06
Identities = 53/238 (22%), Positives = 97/238 (40%), Gaps = 38/238 (15%)
Query: 499 RSRVGVAVMKNRLYAFGG-YNGSERLST-VEEFDPVRRVWNKVSP-------MCFKRSAV 549
R G+AV+ ++LY+FGG +E + + FD W+ C V
Sbjct: 23 RCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCL---GV 79
Query: 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-----RSAGGVIAFDSY 604
A+ KLY+ GG D + Y+ K++W + + + R+ + + +++
Sbjct: 80 RMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENH 139
Query: 605 VYALGG--HDGL----SIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVC 655
VY GG GL F ++E Y+ +W + KR G A + KI+V
Sbjct: 140 VYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVV 199
Query: 656 GGYDGAIF--------LQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGY 705
G+ +I +V+ +DP + +W + + S ++ A+ +G Y
Sbjct: 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA----VVGKY 253
|
Length = 341 |
| >gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 26/91 (28%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
I+L+++ YF+ MF ++ K+ EI + ID + +I ++Y+G++ I S NV+ ++
Sbjct: 28 IILSSSSEYFKKMFKNN---FKENEINLN-IDYDSFNEVIKYIYTGKINITSNNVKDILS 83
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVLDYY 215
+A++L + + + C +++ K NN +D Y
Sbjct: 84 IANYLIIDFLINLCINYIIKIIDDNNCIDIY 114
|
Length = 534 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-05
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 499 RSRVGVAVMKNRLYAFGGY--NGSERLSTVEEFDPVRRVWNKVSPMC 543
R V+ +LY GG G S + DP VW ++ +
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPALP 48
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 551 AAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALG 609
+A +++++ + GGY+ SLN V + + M K+R + D +YA+G
Sbjct: 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIG 358
Query: 610 GHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEM 669
G +G ++ ++E Y D+W + M G+ L+ IY+ GG I SV
Sbjct: 359 GQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHH 418
Query: 670 YDPITDEWKMIASMNVMR 687
+ I E +S V+R
Sbjct: 419 MNSIDMEEDTHSSNKVIR 436
|
Length = 557 |
| >gnl|CDD|128874 smart00612, Kelch, Kelch domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-05
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN 509
G L +VEV+DP +W +M RS GVAV+
Sbjct: 11 GQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47
|
Length = 47 |
| >gnl|CDD|116261 pfam07646, Kelch_2, Kelch motif | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 546 RSAVGAAALNDKLYVCGGY--DGVSSLNTVECYEPDKDQWRIVKSM 589
R + + KLYV GG G S + + +P+ + W + ++
Sbjct: 2 RYPHASVVVGGKLYVVGGSTGLGDLSSSDLWVLDPETNVWTELPAL 47
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that Drosophila ring canal kelch protein is related to Galactose Oxidase for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 48 |
| >gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 12/170 (7%)
Query: 509 NRLYAFGGYNGSERLSTVEEF---DPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGY 564
N +Y GG N SE S+V + + + + + F A + KLYV GG
Sbjct: 73 NGIYYIGGSNSSESFSSVYRITLDESKEALIIETLPSLPFAMDNGSATYKDGKLYVGGGN 132
Query: 565 DGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERY 623
N C+ + +W + R + + +Y GG D + +Y
Sbjct: 133 ANGKPSNKFYCFNLETQEWEELPDFPGAPRVQPVCVKLQNELYVFGGGDN-IAYTDGYKY 191
Query: 624 DPKTDEWTSVKPMLTK---RCRLGVAAL---NNKIYVCGGYDGAIFLQSV 667
PKT W V L+ LG A++ + + GG++ +F +V
Sbjct: 192 SPKTGTWEKVADPLSDGEPISLLGAASIAINESLLLCIGGFNYDVFNDAV 241
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323 |
| >gnl|CDD|234253 TIGR03547, muta_rot_YjhT, mutatrotase, YjhT family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 541 PMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI 599
P+ FK G A+ DK+YV G G S ++ +P K W+ + V
Sbjct: 5 PVGFKN---GTGAIIGDKVYVGLGSAGTS-WYKLDLKKPSK-GWQKIADFPGGPRNQAVA 59
Query: 600 AF-DSYVYALGG-----HDG-LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL---N 649
A D +Y GG +G +FD V RYDPK + W + + LG + N
Sbjct: 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKL-DTRSPVGLLGASGFSLHN 118
Query: 650 NKIYVCGGYDGAIF 663
+ Y GG + IF
Sbjct: 119 GQAYFTGGVNKNIF 132
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. Length = 346 |
| >gnl|CDD|177814 PLN02153, PLN02153, epithiospecifier protein | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 3e-04
Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 19/151 (12%)
Query: 593 RSAGGVIAFDSYVYALGGH--DGLSIFDSVERYDPKTDEWTSVKP---MLTKRCRLGV-- 645
R + G+ +Y+ GG I + +D T W+ + C LGV
Sbjct: 23 RCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISC-LGVRM 81
Query: 646 AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM-----RSRVALVANMGKLW 700
A+ K+Y+ GG D YD + +EW + ++ R+ ++ ++ ++
Sbjct: 82 VAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY 141
Query: 701 AIGGYD--GVSNLP----TVEVYDPSTDSWA 725
GG G+ P T+E Y+ + W
Sbjct: 142 VFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172
|
Length = 341 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 3e-04
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 649 NNKIYVCGGYDG-AIFLQSVEMYDPITDEWKMIASM 683
KIYV GG L + +YD T+ W+ + +
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDL 36
|
Length = 48 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 4e-04
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 546 RSAVGAAALNDKLYVCGGY-DGVSSLNTVECYEPDKDQWRIVKSMQK 591
R+ A ++ K+YV GGY +G + N V Y+P+ W + +
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLPT 48
|
Length = 50 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 5e-04
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 499 RSRVGVAVMKNRLYAFGGY-NGSERLSTVEEFDPVRRVWNKVSPM 542
R+ + ++Y FGGY NGS+ + V +DP W K+ P+
Sbjct: 2 RTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL 46
|
Length = 50 |
| >gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 21/128 (16%)
Query: 550 GAAAL-NDKLYVCGGYDGVS--SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVY 606
GA AL D +YV G G + L+ +P K +I R+ +Y
Sbjct: 40 GAGALIGDTVYVGLGSAGTAFYVLDL---KKPGKGWTKIADFPGGARNQAVAAVIGGKLY 96
Query: 607 ALGGH-----DGLSIFDSVERYDPKTDEWT---SVKPML---TKRCRLGVAALNNKIYVC 655
GG+ +F+ RYDP T+ W + P L KIY
Sbjct: 97 VFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLN----GTKIYFF 152
Query: 656 GGYDGAIF 663
GG + IF
Sbjct: 153 GGVNQNIF 160
|
Length = 381 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 7e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 686 MRSRVALVANMGKLWAIGGYDGVSN-LPTVEVYDPSTDSWAFVAPM 730
R+ + V+ GK++ GGY S V VYDP T SW + P+
Sbjct: 1 PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPL 46
|
Length = 50 |
| >gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 8e-04
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 504 VAVMKNRLYAFGGYNGS-ERLSTVEEFDPVRRVWNKVSPM 542
++ RLY FGG N LS V FD W ++ +
Sbjct: 8 TSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSL 47
|
Length = 49 |
| >gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.001
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 508 KNRLYAFGGYNGS-ERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554
++Y FGG RL+ + +D W K+ + R+ A +
Sbjct: 1 GGKIYVFGGLGDGGTRLNDLWVYDLDTNTWEKLGDLPGPRAGHAATVI 48
|
Length = 48 |
| >gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 415 RRCNYVM----GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQ 451
R + G I+ +GG G SLS+VEV+DP W
Sbjct: 1 PRSGAGVVVLGGKIYVIGGYDG-GQSLSSVEVYDPETNTWS 40
|
The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46 |
| >gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif | Back alignment and domain information |
|---|
Score = 35.5 bits (82), Expect = 0.004
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQM 452
G I+ GG + + + V V+DP G W+
Sbjct: 12 GKIYVFGGYSNGSKASNKVLVYDPETGSWEK 42
|
Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 748 | |||
| KOG4441|consensus | 571 | 100.0 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| KOG4441|consensus | 571 | 100.0 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 100.0 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 100.0 | |
| PLN02153 | 341 | epithiospecifier protein | 100.0 | |
| PLN02193 | 470 | nitrile-specifier protein | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 100.0 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 100.0 | |
| KOG4693|consensus | 392 | 100.0 | ||
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 100.0 | |
| KOG4693|consensus | 392 | 100.0 | ||
| KOG0379|consensus | 482 | 99.97 | ||
| KOG4350|consensus | 620 | 99.97 | ||
| KOG0379|consensus | 482 | 99.96 | ||
| KOG4152|consensus | 830 | 99.96 | ||
| KOG1230|consensus | 521 | 99.95 | ||
| KOG1230|consensus | 521 | 99.95 | ||
| KOG4152|consensus | 830 | 99.94 | ||
| KOG2075|consensus | 521 | 99.86 | ||
| KOG4682|consensus | 488 | 99.82 | ||
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.76 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 99.76 | |
| KOG0783|consensus | 1267 | 99.76 | ||
| COG3055 | 381 | Uncharacterized protein conserved in bacteria [Fun | 99.73 | |
| KOG4591|consensus | 280 | 99.69 | ||
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 99.57 | |
| KOG2437|consensus | 723 | 99.54 | ||
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 99.5 | |
| KOG2437|consensus | 723 | 99.37 | ||
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 99.35 | |
| KOG0783|consensus | 1267 | 99.26 | ||
| PF13964 | 50 | Kelch_6: Kelch motif | 99.21 | |
| PF13964 | 50 | Kelch_6: Kelch motif | 99.19 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.97 | |
| PF01344 | 47 | Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is | 98.93 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.91 | |
| PF13415 | 49 | Kelch_3: Galactose oxidase, central domain | 98.85 | |
| KOG2838|consensus | 401 | 98.82 | ||
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.78 | |
| PF07646 | 49 | Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is | 98.77 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.73 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.71 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.7 | |
| PF13418 | 49 | Kelch_4: Galactose oxidase, central domain; PDB: 2 | 98.7 | |
| smart00612 | 47 | Kelch Kelch domain. | 98.67 | |
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.51 | |
| PLN02772 | 398 | guanylate kinase | 98.51 | |
| PLN02772 | 398 | guanylate kinase | 98.48 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 98.46 | |
| KOG2838|consensus | 401 | 98.44 | ||
| TIGR01640 | 230 | F_box_assoc_1 F-box protein interaction domain. Th | 98.33 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.29 | |
| PF13854 | 42 | Kelch_5: Kelch motif | 98.28 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.12 | |
| KOG4350|consensus | 620 | 98.05 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.04 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 98.02 | |
| KOG0511|consensus | 516 | 98.01 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.91 | |
| PF03089 | 337 | RAG2: Recombination activating protein 2; InterPro | 97.9 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.84 | |
| KOG2716|consensus | 230 | 97.55 | ||
| PF02214 | 94 | BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi | 97.43 | |
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 97.3 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.28 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.26 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.24 | |
| PF00651 | 111 | BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( | 97.23 | |
| PF07893 | 342 | DUF1668: Protein of unknown function (DUF1668); In | 97.23 | |
| PF07707 | 103 | BACK: BTB And C-terminal Kelch; InterPro: IPR01170 | 97.19 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 96.92 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.77 | |
| KOG0511|consensus | 516 | 96.74 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 96.64 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 96.57 | |
| KOG3473|consensus | 112 | 96.57 | ||
| KOG1987|consensus | 297 | 96.54 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.3 | |
| KOG4682|consensus | 488 | 96.22 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.06 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 96.04 | |
| KOG2055|consensus | 514 | 95.99 | ||
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 95.96 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 95.91 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.88 | |
| KOG2714|consensus | 465 | 95.86 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 95.82 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.79 | |
| cd00094 | 194 | HX Hemopexin-like repeats.; Hemopexin is a heme-bi | 95.79 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.77 | |
| smart00875 | 101 | BACK BTB And C-terminal Kelch. The BACK domain is | 95.73 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.73 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.72 | |
| KOG2055|consensus | 514 | 95.53 | ||
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 95.48 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 95.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.45 | |
| KOG4591|consensus | 280 | 95.39 | ||
| KOG0310|consensus | 487 | 95.33 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 95.32 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 95.3 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 95.2 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 95.05 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 94.95 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 94.93 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 94.93 | |
| smart00512 | 104 | Skp1 Found in Skp1 protein family. Family of Skp1 | 94.89 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.78 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 94.66 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 94.55 | |
| PTZ00421 | 493 | coronin; Provisional | 94.55 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 94.46 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.37 | |
| KOG2075|consensus | 521 | 94.35 | ||
| smart00225 | 90 | BTB Broad-Complex, Tramtrack and Bric a brac. Doma | 94.25 | |
| KOG3840|consensus | 438 | 94.21 | ||
| PF02191 | 250 | OLF: Olfactomedin-like domain; InterPro: IPR003112 | 94.18 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 94.16 | |
| KOG0310|consensus | 487 | 94.1 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.98 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 93.89 | |
| smart00284 | 255 | OLF Olfactomedin-like domains. | 93.85 | |
| KOG1665|consensus | 302 | 93.64 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 93.52 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 93.47 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 93.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 92.7 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 92.63 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 92.07 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 91.99 | |
| PF03931 | 62 | Skp1_POZ: Skp1 family, tetramerisation domain; Int | 91.84 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 91.78 | |
| PF12217 | 367 | End_beta_propel: Catalytic beta propeller domain o | 91.75 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 91.58 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 91.46 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 91.35 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 91.09 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.09 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 90.74 | |
| KOG2715|consensus | 210 | 90.74 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 90.26 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.21 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 90.21 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 89.83 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 89.75 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 89.75 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 89.5 | |
| PTZ00420 | 568 | coronin; Provisional | 88.89 | |
| PRK10115 | 686 | protease 2; Provisional | 88.19 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 87.64 | |
| KOG1724|consensus | 162 | 87.54 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 87.02 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 86.92 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 86.8 | |
| PF01466 | 78 | Skp1: Skp1 family, dimerisation domain; InterPro: | 86.39 | |
| PTZ00421 | 493 | coronin; Provisional | 86.14 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 85.83 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 85.51 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 85.38 | |
| PF08268 | 129 | FBA_3: F-box associated domain; InterPro: IPR01318 | 85.11 | |
| KOG2716|consensus | 230 | 84.98 | ||
| PF11822 | 317 | DUF3342: Domain of unknown function (DUF3342); Int | 84.93 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 84.82 | |
| PF13088 | 275 | BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A | 84.09 | |
| KOG0316|consensus | 307 | 83.69 | ||
| KOG0289|consensus | 506 | 83.47 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 83.19 | |
| KOG0316|consensus | 307 | 81.75 | ||
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 81.42 | |
| PRK10115 | 686 | protease 2; Provisional | 81.22 | |
| KOG1332|consensus | 299 | 81.13 | ||
| KOG1036|consensus | 323 | 81.01 | ||
| KOG0646|consensus | 476 | 80.65 |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-97 Score=819.13 Aligned_cols=560 Identities=48% Similarity=0.845 Sum_probs=526.9
Q ss_pred ccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehh
Q psy10286 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVL 127 (748)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~ 127 (748)
....+....|...+++.|+.+++++.+|||++.+++++|+|||.||||+|+||++||+++++|+.+..|.+
T Consensus 10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--------- 80 (571)
T KOG4441|consen 10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--------- 80 (571)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE---------
Confidence 34567888999999999999999999999999999999999999999999999999999888887777666
Q ss_pred hccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhccc
Q psy10286 128 AATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 207 (748)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~ 207 (748)
.++++++++.+|+|+|||++.|+.+||++|+.+|++|||+.++++|++||+++++
T Consensus 81 -------------------------~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~ 135 (571)
T KOG4441|consen 81 -------------------------EGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLD 135 (571)
T ss_pred -------------------------ecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999999999999999999999999999999999887
Q ss_pred CCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCch
Q psy10286 208 PNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCL 287 (748)
Q Consensus 208 ~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~ 287 (748)
++||++| ..+|+.+++.
T Consensus 136 ~~Nclgi---------------------------------------------------------------~~~a~~~~~~ 152 (571)
T KOG4441|consen 136 PSNCLGI---------------------------------------------------------------RRFAELHSCT 152 (571)
T ss_pred HHHHHHH---------------------------------------------------------------HHHHHhcCcH
Confidence 7777664 4456778888
Q ss_pred HHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCC
Q psy10286 288 QLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLS 367 (748)
Q Consensus 288 ~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~ 367 (748)
+|.+.+..|+.+||.++.++++|.+|+.+.|..++.++.|++.+|++||+++++|++++.+.|+.+++.+++++|+++++
T Consensus 153 ~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~ 232 (571)
T KOG4441|consen 153 ELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLP 232 (571)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccchhhccChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCC
Q psy10286 368 PHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLV 447 (748)
Q Consensus 368 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~ 447 (748)
+.+|.+.+...+++..+..|++++.++++|+..+.++..++.++++||. ...+.||++||+....
T Consensus 233 ~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~--~~~~~l~~vGG~~~~~------------- 297 (571)
T KOG4441|consen 233 PQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR--SVSGKLVAVGGYNRQG------------- 297 (571)
T ss_pred HHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc--CCCCeEEEECCCCCCC-------------
Confidence 9999999999999999999999999999999999887778888888886 4678999999986422
Q ss_pred CceeecccccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC-CCCCCCeE
Q psy10286 448 GRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN-GSERLSTV 526 (748)
Q Consensus 448 ~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v 526 (748)
...+.+..||+.+++|..+++||.+|..+++++++|+||++||.+ +...++++
T Consensus 298 --------------------------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 298 --------------------------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred --------------------------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceE
Confidence 566889999999999999999999999999999999999999999 78889999
Q ss_pred EEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEE
Q psy10286 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVY 606 (748)
Q Consensus 527 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 606 (748)
|+|||.+++|..+++|+.+|..+++++++|.||++||.++...++++++|||.+++|+.+++|+.+|.+|++++++|+||
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCc-ccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC
Q psy10286 607 ALGGHDGLS-IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV 685 (748)
Q Consensus 607 v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 685 (748)
++||.++.. .++++++|||.+++|+.+++|+.+|.++++++++++||++||+++.....++++|||.+++|+.+++|+.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 999998877 8999999999999999999999999999999999999999999997778899999999999999999999
Q ss_pred CCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEeecC
Q psy10286 686 MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPIC 745 (748)
Q Consensus 686 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 745 (748)
+|.+++++++++++|++||+++..++++|++|||.+++|+..+++...|.+.+|+++..|
T Consensus 512 ~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~~~~ 571 (571)
T KOG4441|consen 512 PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVIPMP 571 (571)
T ss_pred ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceEEecCC
Confidence 999999999999999999999999999999999999999999997778888888877654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-87 Score=746.45 Aligned_cols=519 Identities=18% Similarity=0.348 Sum_probs=453.5
Q ss_pred eecchhhHhhHHHHHHHHHhcCCcccEEEEEC-CeEEeeeeeeeeccCHHHHHhhcccccccc-cceeeeecchheehhh
Q psy10286 51 VFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVD-DQSFTCHRIVLAATIPYFQAMFTSDMAESK-QREITMQGIDAVIVLA 128 (748)
Q Consensus 51 ~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~-~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~-~~~~~~~~~~~~~~~~ 128 (748)
++.+..|...+++.|++|++++.+|||+|.++ |++|+|||+||||+|+||++||+++++|.. +..|.+
T Consensus 2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l---------- 71 (557)
T PHA02713 2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL---------- 71 (557)
T ss_pred CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe----------
Confidence 45667899999999999999999999999997 899999999999999999999999888753 455555
Q ss_pred ccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 129 ATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
+++++++|+.+|+|+|||+ ++.+||++|+.+|++||++.|+++|++||++++++
T Consensus 72 ------------------------~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~ 125 (557)
T PHA02713 72 ------------------------QMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNH 125 (557)
T ss_pred ------------------------ccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCc
Confidence 8999999999999999998 68899999999999999999999999999998888
Q ss_pred CcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchH
Q psy10286 209 NNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQ 288 (748)
Q Consensus 209 ~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~ 288 (748)
+||++++ .++..+.+.+
T Consensus 126 ~NCl~i~---------------------------------------------------------------~~~~~~~~~~ 142 (557)
T PHA02713 126 DTCIYMY---------------------------------------------------------------HRLYEMSHIP 142 (557)
T ss_pred cchHHHH---------------------------------------------------------------HHHHhccchH
Confidence 8887643 2233445567
Q ss_pred HHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCC-cCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCC
Q psy10286 289 LSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSE-LHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLS 367 (748)
Q Consensus 289 l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~-l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~ 367 (748)
|.++|.+||.+||.++.++++|..|+.+.|.++|++++ |++.+|++||+++++|++|+...|++ +.+++++|||+++.
T Consensus 143 L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~-~~~ll~~VR~~~l~ 221 (557)
T PHA02713 143 IVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQ-LLCILSCIDIQNLD 221 (557)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHH-HhhhHhhhhHhhcc
Confidence 88999999999999999999999999999999999987 78999999999999999999876655 66999999999999
Q ss_pred hHHHHhhhccchhhccChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCC
Q psy10286 368 PHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLV 447 (748)
Q Consensus 368 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~ 447 (748)
+.++. .+...+++...+.|.+.+.++..++ ...||. ..+++.||...
T Consensus 222 ~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~------------~~~~r~-----~~l~~~~g~~~--------------- 268 (557)
T PHA02713 222 KKSRL-LLYSNKTINMYPSCIQFLLDNKQNR------------NIIPRQ-----LCLVCHDTKYN--------------- 268 (557)
T ss_pred hhhhh-hhcchHHHHhhHHHHHHHhhhhhhc------------ccCCcc-----eEEEEecCccc---------------
Confidence 98876 5556678888889998887765321 123443 34666655211
Q ss_pred CceeecccccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC-CCCCCCeE
Q psy10286 448 GRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN-GSERLSTV 526 (748)
Q Consensus 448 ~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v 526 (748)
.....+++||+.+++|..+++||.+|.++++++++|+|||+||.+ +....+++
T Consensus 269 --------------------------~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v 322 (557)
T PHA02713 269 --------------------------VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKV 322 (557)
T ss_pred --------------------------cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceE
Confidence 122468999999999999999999999999999999999999975 34457899
Q ss_pred EEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEE
Q psy10286 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVY 606 (748)
Q Consensus 527 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 606 (748)
++|||.+++|..+++||.+|.++++++++|+||++||.++...++++++|||.+++|+.+++||.+|..+++++++|+||
T Consensus 323 ~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IY 402 (557)
T PHA02713 323 YKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIY 402 (557)
T ss_pred EEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEE
Confidence 99999999999999999999999999999999999999877778899999999999999999999999999999999999
Q ss_pred EEccCCCCc------------------ccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCcc-ccEE
Q psy10286 607 ALGGHDGLS------------------IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF-LQSV 667 (748)
Q Consensus 607 v~GG~~~~~------------------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~v 667 (748)
++||.++.. ..+.+++|||.+++|+.+++|+.+|..+++++++|+|||+||.++... .+.+
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeE
Confidence 999986421 257899999999999999999999999999999999999999875433 3568
Q ss_pred EEEeCCC-CcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCC
Q psy10286 668 EMYDPIT-DEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMC 731 (748)
Q Consensus 668 ~~yd~~~-~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 731 (748)
++|||.+ ++|+.+++||.+|..+++++++|+||++||+++. .++++||+.+++|+.+.+-.
T Consensus 483 e~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 483 FRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred EEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhhc
Confidence 9999999 8999999999999999999999999999998864 47999999999999887643
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-77 Score=672.77 Aligned_cols=512 Identities=23% Similarity=0.446 Sum_probs=437.6
Q ss_pred cCCcccEEEEE--CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccce
Q psy10286 71 QGKLCDVTIKV--DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQR 148 (748)
Q Consensus 71 ~~~~~Dv~i~~--~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (748)
++.+|||+|++ +|++|+|||.||+++|+||++||.++++ ...|.+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l------------------------------ 52 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL------------------------------ 52 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe------------------------------
Confidence 89999999998 9999999999999999999999998876 334444
Q ss_pred eeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHH
Q psy10286 149 EITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALIN 228 (748)
Q Consensus 149 ~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~ 228 (748)
++ ++++|+.+|+|+|||++.++.+++++|+.+|++||++.|++.|++||.++++.+||
T Consensus 53 ----~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc----------------- 110 (534)
T PHA03098 53 ----NI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNC----------------- 110 (534)
T ss_pred ----cC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHH-----------------
Confidence 78 99999999999999999999999999999999999999998888888776555554
Q ss_pred hhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCc
Q psy10286 229 FAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSD 308 (748)
Q Consensus 229 ~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~ 308 (748)
+.++.+|+.+++.+|.++|++||.+||.++.+++
T Consensus 111 ----------------------------------------------~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~ 144 (534)
T PHA03098 111 ----------------------------------------------IDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDP 144 (534)
T ss_pred ----------------------------------------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4555667788889999999999999999999999
Q ss_pred ccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCChHHHHhhhc------cchhhc
Q psy10286 309 EFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVA------TEALIR 382 (748)
Q Consensus 309 ~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~~~l~~~~~------~~~l~~ 382 (748)
+|..|+.+.|..+|+++.|.+.+|++||+++++|++++.++|.+++.+++++|||++|++++|.+... ...++
T Consensus 145 ~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~- 223 (534)
T PHA03098 145 DFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV- 223 (534)
T ss_pred hhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-
Confidence 99999999999999999999999999999999999999999999999999999999999999877653 34444
Q ss_pred cChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceE
Q psy10286 383 SSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAV 462 (748)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~ 462 (748)
....|...+..+..+.. ...+|.. ..+..+++.||...
T Consensus 224 ~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~g~~~------------------------------ 261 (534)
T PHA03098 224 FNKRCIKIIYSKKYNLN-----------KILPRSS-TFGSIIYIHITMSI------------------------------ 261 (534)
T ss_pred ccccchHHHHHHHhccc-----------CCCcCcc-CCCcceEeecccch------------------------------
Confidence 56678877766655421 0112221 12345666565421
Q ss_pred EecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCC-CCCeEEEEECCCCeEEEccC
Q psy10286 463 ISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE-RLSTVEEFDPVRRVWNKVSP 541 (748)
Q Consensus 463 ~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~ 541 (748)
....+..|++.+++|..+++.+. +..|+++++++.||++||..+.. ..+++++||+.+++|..+++
T Consensus 262 ------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (534)
T PHA03098 262 ------------FTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE 328 (534)
T ss_pred ------------hhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC
Confidence 11234568888888988876664 44578899999999999987533 45789999999999999999
Q ss_pred CCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCC-CcccCeE
Q psy10286 542 MCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDG-LSIFDSV 620 (748)
Q Consensus 542 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~ 620 (748)
||.+|.+|++++++++||++||.++...++++++||+.+++|+..+++|.+|.+|+++.++++||++||... ...++++
T Consensus 329 ~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v 408 (534)
T PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTV 408 (534)
T ss_pred CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceE
Confidence 999999999999999999999998766789999999999999999999999999999999999999999743 3346899
Q ss_pred EEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc---cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECC
Q psy10286 621 ERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI---FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697 (748)
Q Consensus 621 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 697 (748)
++||+.+++|+.++++|.+|.+|+++.++++||++||.+... ..+.+++||+.+++|+.++++|.+|.+++++.+++
T Consensus 409 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 488 (534)
T PHA03098 409 ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNN 488 (534)
T ss_pred EEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECC
Confidence 999999999999999999999999999999999999976543 25679999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEE
Q psy10286 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739 (748)
Q Consensus 698 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 739 (748)
+|||+||.++....+++++||+.+++|+.++.+|.......+
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~ 530 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLEK 530 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccceee
Confidence 999999998776678999999999999999998876655443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-74 Score=627.26 Aligned_cols=465 Identities=20% Similarity=0.352 Sum_probs=380.2
Q ss_pred HHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccc
Q psy10286 62 FPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSD 141 (748)
Q Consensus 62 ~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (748)
-+.+..|+.++++|||++.++ ++|+|||+||||.|+|||+||.++++|+.. .+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~----------------------- 64 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTR----------------------- 64 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEE-----------------------
Confidence 356788999999999998864 699999999999999999999999988743 3333
Q ss_pred cccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhh
Q psy10286 142 MAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCR 221 (748)
Q Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~ 221 (748)
...++++++|+.+|+|+|||++.++.+||++|+.||++||++.++++|++||+++++++||++
T Consensus 65 ---------~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~-------- 127 (480)
T PHA02790 65 ---------VCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVE-------- 127 (480)
T ss_pred ---------EecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHH--------
Confidence 113899999999999999999999999999999999999999999999888888766666654
Q ss_pred HHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhh
Q psy10286 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYF 301 (748)
Q Consensus 222 ~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~ 301 (748)
++.+|+.|++.+|.+++.+||.+||
T Consensus 128 -------------------------------------------------------i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 128 -------------------------------------------------------CYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred -------------------------------------------------------HHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 4556777888899999999999999
Q ss_pred hhhccC--cccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhh-ccCCCCChHHHHhhhccc
Q psy10286 302 HEVSMS--DEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAA-VRLPLLSPHYLADRVATE 378 (748)
Q Consensus 302 ~~l~~~--~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~-vR~~~l~~~~l~~~~~~~ 378 (748)
.++.++ ++|..|+. .++|++|+|++.+|++||+++++|++++. .+...+.++++. +|++++++..+..
T Consensus 153 ~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~~-~~~~~l~~~vr~~ir~~~l~~~~l~~----- 223 (480)
T PHA02790 153 LELEDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKRR-NRLGNLLLLIKNVIRSNYLSPRGINN----- 223 (480)
T ss_pred HHHhcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCChhhCCHHHHHH-----
Confidence 999986 89999986 67999999999999999999999999742 222233333333 6777777665531
Q ss_pred hhhccChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccc
Q psy10286 379 ALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL 458 (748)
Q Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~ 458 (748)
+..++.++..++.. ..||.... +..++
T Consensus 224 --------~~~~~~~~~~~~~~-----------~~~r~~~~-----~~~~~----------------------------- 250 (480)
T PHA02790 224 --------VKWILDCTKIFHCD-----------KQPRKSYK-----YPFIE----------------------------- 250 (480)
T ss_pred --------HHHHHHHHHHhhcc-----------cccccccc-----ccccc-----------------------------
Confidence 22233333332211 12232100 00000
Q ss_pred cceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE
Q psy10286 459 SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK 538 (748)
Q Consensus 459 ~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 538 (748)
+.+..++|.... ....++.+++.||++||.++....+.+++|||.+++|..
T Consensus 251 -----------------------~~~~~~~~~~~~------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~ 301 (480)
T PHA02790 251 -----------------------YPMNMDQIIDIF------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIP 301 (480)
T ss_pred -----------------------cCCcccceeecc------CCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEE
Confidence 223444565432 112235589999999998766677899999999999999
Q ss_pred ccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccC
Q psy10286 539 VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFD 618 (748)
Q Consensus 539 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 618 (748)
+++|+.+|..+++++++|+||++||.++ .+++++|||.+++|+.+++||.+|.++++++++|+||++||.++. .+
T Consensus 302 ~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~ 376 (480)
T PHA02790 302 IPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DT 376 (480)
T ss_pred CCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Cc
Confidence 9999999999999999999999999753 267999999999999999999999999999999999999998643 36
Q ss_pred eEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCE
Q psy10286 619 SVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGK 698 (748)
Q Consensus 619 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 698 (748)
.+++|||.+++|+.+++|+.+|..+++++++|+||++||. +++||+++++|+.+++|+.+|.++++++++|+
T Consensus 377 ~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 377 TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNK 448 (480)
T ss_pred cEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCE
Confidence 7999999999999999999999999999999999999983 68899999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 699 LWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 699 l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
|||+||.++....+++++|||++++|+..
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EEEECCcCCCcccceEEEEECCCCeEEec
Confidence 99999998666678999999999999864
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=474.60 Aligned_cols=238 Identities=47% Similarity=0.835 Sum_probs=228.0
Q ss_pred EECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCC-CCCCCceEEEEeCCCCeE
Q psy10286 506 VMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 506 ~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W 583 (748)
...+.||++||..+ ....+.++.|||.+++|...++||.+|..+++++++|+||++||.+ +...++++|+|||.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45789999999986 6678899999999999999999999999999999999999999999 788899999999999999
Q ss_pred EEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc-
Q psy10286 584 RIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI- 662 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~- 662 (748)
+.+++|+.+|.++++++++|.||++||.++...++++++|||.+++|+.+++|+.+|.+|++++++++||++||.++..
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 663 FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
.++++++|||.+++|+.+++|+.+|.++++++++++||++||+++.....+|+.|||.+++|+.+++|+.+|..++++++
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~ 521 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL 521 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE
Confidence 89999999999999999999999999999999999999999999976778899999999999999999999999999887
Q ss_pred e
Q psy10286 743 P 743 (748)
Q Consensus 743 ~ 743 (748)
-
T Consensus 522 ~ 522 (571)
T KOG4441|consen 522 G 522 (571)
T ss_pred C
Confidence 3
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=422.02 Aligned_cols=233 Identities=18% Similarity=0.304 Sum_probs=207.3
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCC-CCCCCceEEEEeCCCCeEEEccC
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKS 588 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~ 588 (748)
.+++.||..+ .....+++||+.+++|..+++||.+|.++++++++++||++||.+ +...++++++|||.+++|..+++
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP 337 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence 3455555321 233578999999999999999999999999999999999999976 34467899999999999999999
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc------
Q psy10286 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI------ 662 (748)
Q Consensus 589 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~------ 662 (748)
||.+|..+++++++|+||++||.++....+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 338 m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 338 MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccc
Confidence 99999999999999999999999876677899999999999999999999999999999999999999986421
Q ss_pred ------------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCC-CCeEEEEeCCC-CceEecC
Q psy10286 663 ------------FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN-LPTVEVYDPST-DSWAFVA 728 (748)
Q Consensus 663 ------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-~~~v~~yd~~~-~~W~~~~ 728 (748)
..+++++|||.+++|+.+++|+.+|..+++++++|+|||+||.++... .+.+++|||++ ++|+.++
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 257899999999999999999999999999999999999999875433 34689999999 8999999
Q ss_pred CCCCCCcceEEEEee
Q psy10286 729 PMCAHEGGVGVGVIP 743 (748)
Q Consensus 729 ~~~~~r~~~~~~~~~ 743 (748)
+||.+|..++++++.
T Consensus 498 ~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 498 TTESRLSALHTILHD 512 (557)
T ss_pred ccCcccccceeEEEC
Confidence 999999999999874
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=383.86 Aligned_cols=404 Identities=20% Similarity=0.354 Sum_probs=292.9
Q ss_pred EeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhc
Q psy10286 173 TIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFL 252 (748)
Q Consensus 173 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~ 252 (748)
.++.+|+.+++.+|..+.++.|.+.|.+|+.+ |+.++.+..+|.
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~------------------------------------nf~~v~~~~~f~ 147 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRN------------------------------------NIELIYNDPDFI 147 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------------------HHHHHhcCchhh
Confidence 36788999999999999999999999999877 455666666666
Q ss_pred CcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHH-------HhhhhhccCcccccCCHHhHhcccc--
Q psy10286 253 QMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQ-------QYFHEVSMSDEFIGLGVNEVNDIVK-- 323 (748)
Q Consensus 253 ~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~-------~~~~~l~~~~~f~~L~~~~l~~il~-- 323 (748)
+|+. +.....|. .+.+ ..-+.+++++++++|+. +++.++++.++|..|+.+.|..+..
T Consensus 148 ~l~~--~~l~~ll~----~~~L-------~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~ 214 (534)
T PHA03098 148 YLSK--NELIKILS----DDKL-------NVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWK 214 (534)
T ss_pred cCCH--HHHHHHhc----CCCc-------CcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHH
Confidence 6641 11112222 1110 01134579999999995 3678999999999999999988764
Q ss_pred ----cCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCChHHHHhhhccchhhccChhhhHHHHHHHhhcc
Q psy10286 324 ----RSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHL 399 (748)
Q Consensus 324 ----~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 399 (748)
.+.+. .++. ....+..-..+....+ .|..... ..+ ++.. ... ........+..
T Consensus 215 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~-~~~--------~~~~-g~~-~~~~~~~~~~~ 271 (534)
T PHA03098 215 LRIKKKKIV-FNKR-CIKIIYSKKYNLNKIL----------PRSSTFG-SII--------YIHI-TMS-IFTYNYITNYS 271 (534)
T ss_pred hhcCCccee-cccc-chHHHHHHHhcccCCC----------cCccCCC-cce--------Eeec-ccc-hhhceeeecch
Confidence 33433 2332 1111111000000000 0100000 000 0000 000 00000001111
Q ss_pred CcccccccCCCccCCCcc---CCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCcc
Q psy10286 400 MPERRFLLAGEKTTPRRC---NYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSL 476 (748)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~---~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~ 476 (748)
....|..+.... .+.+ ...++.||++||....+ ...
T Consensus 272 ~~~~~~~~~~~~--~~~~~~~~~~~~~lyv~GG~~~~~---------------------------------------~~~ 310 (534)
T PHA03098 272 PLSEINTIIDIH--YVYCFGSVVLNNVIYFIGGMNKNN---------------------------------------LSV 310 (534)
T ss_pred hhhhcccccCcc--ccccceEEEECCEEEEECCCcCCC---------------------------------------Cee
Confidence 111122121111 1222 23789999999985432 344
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
++++.||+.+++|..++++|.+|.+|++++++++||++||.++....+++++||+.+++|+..+++|.+|.+|+++.+++
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN 390 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECC
Confidence 68999999999999999999999999999999999999999876678899999999999999999999999999999999
Q ss_pred EEEEEeCCCC-CCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCc---ccCeEEEEECCCCcEEE
Q psy10286 557 KLYVCGGYDG-VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS---IFDSVERYDPKTDEWTS 632 (748)
Q Consensus 557 ~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~ 632 (748)
+||++||... ...++++++||+.+++|+.++++|.+|.+|++++++++||++||.+... ..+.+++||+.+++|+.
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 9999999753 3457899999999999999999999999999999999999999985432 35679999999999999
Q ss_pred ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc
Q psy10286 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR 689 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (748)
++++|.+|..+++++++++|||+||.++....+++++||+.+++|+.++.+|.....
T Consensus 471 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 471 LSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred CCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence 999999999999999999999999998776688999999999999999887765443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=354.95 Aligned_cols=261 Identities=22% Similarity=0.392 Sum_probs=223.4
Q ss_pred EEEEeCCC----CceEEccC---CCcccceeEEEEECCEEEEEccCCC-C-CCCCeEEEEECCCCeEEEccC---CCC-C
Q psy10286 479 VEVFDPLV----GRWQMAEA---MSMLRSRVGVAVMKNRLYAFGGYNG-S-ERLSTVEEFDPVRRVWNKVSP---MCF-K 545 (748)
Q Consensus 479 ~~~yd~~~----~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~-~-~~~~~v~~yd~~t~~W~~~~~---~~~-~ 545 (748)
++.+++.+ ++|..+.+ +|.+|.+|++++++++|||+||... . ...+++|+||+.+++|+.+++ +|. +
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 34446655 79998876 5889999999999999999999753 2 234689999999999998764 343 3
Q ss_pred cceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC---CCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 546 RSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM---QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
|.+|++++++++||++||.++...++++++||+.+++|+.++++ |.+|..|++++++++||++||.++....+++++
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEE
Confidence 56889999999999999998777789999999999999999887 889999999999999999999987777889999
Q ss_pred EECCCCcEEEccC---CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccC---CCCCCcceEEEEEC
Q psy10286 623 YDPKTDEWTSVKP---MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS---MNVMRSRVALVANM 696 (748)
Q Consensus 623 yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~ 696 (748)
||+.+++|+.++. +|.+|..|++++++++||++||.++. ..+++++||+.+++|+.++. .|.+|..|+++.++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 9999999999874 67889999999999999999998764 36899999999999999865 48899999999999
Q ss_pred CEEEEEeCCCCC---------CCCCeEEEEeCCCCceEecCCC------CCCCcceEEE
Q psy10286 697 GKLWAIGGYDGV---------SNLPTVEVYDPSTDSWAFVAPM------CAHEGGVGVG 740 (748)
Q Consensus 697 ~~l~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~------~~~r~~~~~~ 740 (748)
++|||+||.... ...+++++||+.+++|+.++.+ |.+|..|+++
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~ 436 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTAST 436 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccce
Confidence 999999997531 2346899999999999988753 6778777643
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=343.64 Aligned_cols=261 Identities=22% Similarity=0.332 Sum_probs=220.7
Q ss_pred CCCCceEEccC----CCcccceeEEEEECCEEEEEccCCC--CCCCCeEEEEECCCCeEEEccCCC-CCc---ceeEEEE
Q psy10286 484 PLVGRWQMAEA----MSMLRSRVGVAVMKNRLYAFGGYNG--SERLSTVEEFDPVRRVWNKVSPMC-FKR---SAVGAAA 553 (748)
Q Consensus 484 ~~~~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~-~~r---~~~~~~~ 553 (748)
+...+|.++.. +|.+|.+|++++++++|||+||... ....+++++||+.+++|+.+++++ .+| .+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35667998876 7899999999999999999999853 234578999999999999988764 343 3788999
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-----CCCCcceEEEEECCEEEEEccCCCCc------ccCeEEE
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-----QKHRSAGGVIAFDSYVYALGGHDGLS------IFDSVER 622 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~ 622 (748)
++++||++||.++...++++++||+.+++|+.++++ |.+|..|++++.+++|||+||.+... .++++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999988777788999999999999999877 78999999999999999999985321 3578999
Q ss_pred EECCCCcEEEccCCC---CCCcceeEEEECCEEEEEeccCCC--------ccccEEEEEeCCCCcEEEcc---CCCCCCc
Q psy10286 623 YDPKTDEWTSVKPML---TKRCRLGVAALNNKIYVCGGYDGA--------IFLQSVEMYDPITDEWKMIA---SMNVMRS 688 (748)
Q Consensus 623 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~~---~~p~~r~ 688 (748)
||+.+++|+.++.+. .+|..|++++++++|||+||.+.. ...+++++||+.+++|+.+. .+|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998653 789999999999999999997521 23578999999999999985 4688999
Q ss_pred ceEEEEECCEEEEEeCCCC---------CCCCCeEEEEeCCCCceEecC-----CCCCCCcceEEEEeec
Q psy10286 689 RVALVANMGKLWAIGGYDG---------VSNLPTVEVYDPSTDSWAFVA-----PMCAHEGGVGVGVIPI 744 (748)
Q Consensus 689 ~~~~~~~~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~~~ 744 (748)
.|++++++++||||||... ....+++++||+++++|+.++ ++|++|..++++++..
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~ 313 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYG 313 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCC
Confidence 9999999999999999742 223568999999999999885 6788888777776654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=354.47 Aligned_cols=193 Identities=21% Similarity=0.388 Sum_probs=179.1
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+.+++|||.+++|..+++|+.+|..+++++++|+||++||.++ .+++++|||.+++|..+++||.+|.+|+++++
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~ 361 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASI 361 (480)
T ss_pred cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEE
Confidence 456799999999999999999999999999999999999999753 26799999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
+|+||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||. +++|||.+++|+.++
T Consensus 362 ~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 362 NNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLID 431 (480)
T ss_pred CCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcC
Confidence 9999999998643 368999999999999999999999999999999999999984 689999999999999
Q ss_pred CCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 635 PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 635 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+|+.+|..+++++++|+||++||+++....+++++||+.+++|+..
T Consensus 432 ~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 432 DPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9999999999999999999999988666678999999999999865
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=341.01 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=221.1
Q ss_pred cCCCccCC---cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCCCCc
Q psy10286 412 TTPRRCNY---VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR 488 (748)
Q Consensus 412 ~~~r~~~~---~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~ 488 (748)
+.||.++. ++++||++||....+ ....+++++||+.+++
T Consensus 20 P~pR~~h~~~~~~~~iyv~GG~~~~~--------------------------------------~~~~~~~~~yd~~~~~ 61 (341)
T PLN02153 20 PGPRCSHGIAVVGDKLYSFGGELKPN--------------------------------------EHIDKDLYVFDFNTHT 61 (341)
T ss_pred CCCCCcceEEEECCEEEEECCccCCC--------------------------------------CceeCcEEEEECCCCE
Confidence 45676554 789999999974321 0234689999999999
Q ss_pred eEEccCCC-ccc---ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-----CCCcceeEEEEECCEEE
Q psy10286 489 WQMAEAMS-MLR---SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-----CFKRSAVGAAALNDKLY 559 (748)
Q Consensus 489 W~~~~~~~-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iy 559 (748)
|..+++++ .|| .+|++++++++|||+||..+....+++++||+.+++|+.+++| |.+|..|++++.+++||
T Consensus 62 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy 141 (341)
T PLN02153 62 WSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY 141 (341)
T ss_pred EEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE
Confidence 99988764 343 3788999999999999987766778999999999999999887 88999999999999999
Q ss_pred EEeCCCCC------CCCceEEEEeCCCCeEEEccCCC---CCCcceEEEEECCEEEEEccCCCC--------cccCeEEE
Q psy10286 560 VCGGYDGV------SSLNTVECYEPDKDQWRIVKSMQ---KHRSAGGVIAFDSYVYALGGHDGL--------SIFDSVER 622 (748)
Q Consensus 560 v~GG~~~~------~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~ 622 (748)
|+||.+.. ..++++++||+.+++|+.++++. .+|.+|++++++++||++||.+.. ...+++++
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~ 221 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQF 221 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEE
Confidence 99998632 14578999999999999998764 789999999999999999996421 12578999
Q ss_pred EECCCCcEEEccC---CCCCCcceeEEEECCEEEEEeccCC---------CccccEEEEEeCCCCcEEEcc-----CCCC
Q psy10286 623 YDPKTDEWTSVKP---MLTKRCRLGVAALNNKIYVCGGYDG---------AIFLQSVEMYDPITDEWKMIA-----SMNV 685 (748)
Q Consensus 623 yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~p~ 685 (748)
||+.+++|+.++. +|.+|..|++++++++|||+||... ....+++++||+.+++|+.++ ++|.
T Consensus 222 yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr 301 (341)
T PLN02153 222 FDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPR 301 (341)
T ss_pred EEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCC
Confidence 9999999999864 6889999999999999999999732 234679999999999999985 4555
Q ss_pred CCcceEEEEE--CCEEEEEeCCCCC-CCCCeEEEEeCC
Q psy10286 686 MRSRVALVAN--MGKLWAIGGYDGV-SNLPTVEVYDPS 720 (748)
Q Consensus 686 ~r~~~~~~~~--~~~l~v~GG~~~~-~~~~~v~~yd~~ 720 (748)
+|..++++.+ +++||++||.++. ..+.++++|+..
T Consensus 302 ~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 302 GWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred ccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 5654444443 4589999999764 467899999764
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=342.36 Aligned_cols=271 Identities=23% Similarity=0.355 Sum_probs=225.7
Q ss_pred cCCCccCC---cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCCCCc
Q psy10286 412 TTPRRCNY---VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR 488 (748)
Q Consensus 412 ~~~r~~~~---~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~ 488 (748)
+.||..+. +++.||++||....+. ...+++|+||+.+++
T Consensus 163 P~pR~~h~~~~~~~~iyv~GG~~~~~~--------------------------------------~~~~~v~~yD~~~~~ 204 (470)
T PLN02193 163 PGLRCSHGIAQVGNKIYSFGGEFTPNQ--------------------------------------PIDKHLYVFDLETRT 204 (470)
T ss_pred CCCccccEEEEECCEEEEECCcCCCCC--------------------------------------CeeCcEEEEECCCCE
Confidence 45676654 7899999999743210 223579999999999
Q ss_pred eEEccC---CCc-ccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC---CCCcceeEEEEECCEEEEE
Q psy10286 489 WQMAEA---MSM-LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM---CFKRSAVGAAALNDKLYVC 561 (748)
Q Consensus 489 W~~~~~---~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~ 561 (748)
|..++. +|. +|.+|++++++++|||+||..+....+++|+||+.+++|+.++++ |.+|+.|++++++++||++
T Consensus 205 W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~ 284 (470)
T PLN02193 205 WSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVF 284 (470)
T ss_pred EEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEE
Confidence 998764 343 357899999999999999988777789999999999999999887 8899999999999999999
Q ss_pred eCCCCCCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC--
Q psy10286 562 GGYDGVSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-- 636 (748)
Q Consensus 562 GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-- 636 (748)
||.++...++++++||+.+++|+.+++ +|.+|..|++++++++||++||.++.. .+++++||+.+++|+.++++
T Consensus 285 GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~~yD~~t~~W~~~~~~g~ 363 (470)
T PLN02193 285 GGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDVHYYDPVQDKWTQVETFGV 363 (470)
T ss_pred CCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCceEEEECCCCEEEEeccCCC
Confidence 999877778999999999999999864 678899999999999999999986543 68999999999999999754
Q ss_pred -CCCCcceeEEEECCEEEEEeccCC---------CccccEEEEEeCCCCcEEEccC------CCCCCcceEEE--EE-C-
Q psy10286 637 -LTKRCRLGVAALNNKIYVCGGYDG---------AIFLQSVEMYDPITDEWKMIAS------MNVMRSRVALV--AN-M- 696 (748)
Q Consensus 637 -p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~--~~-~- 696 (748)
|.+|..|++++++++|||+||... ....+++++||+.+++|+.++. .|.+|..++++ .+ +
T Consensus 364 ~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~ 443 (470)
T PLN02193 364 RPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGK 443 (470)
T ss_pred CCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCC
Confidence 889999999999999999999753 1245789999999999999864 35677766432 23 3
Q ss_pred CEEEEEeCCCC-CCCCCeEEEEeCCC
Q psy10286 697 GKLWAIGGYDG-VSNLPTVEVYDPST 721 (748)
Q Consensus 697 ~~l~v~GG~~~-~~~~~~v~~yd~~~ 721 (748)
+.|++|||.++ +...+++|+|+..+
T Consensus 444 ~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 444 KGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred ceEEEEcCCCCccccccceEEEecCC
Confidence 45999999975 45678999998764
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=327.81 Aligned_cols=242 Identities=18% Similarity=0.263 Sum_probs=198.5
Q ss_pred ceEEEEeC--CCCceEEccCCC-cccceeEEEEECCEEEEEccCCCCC------CCCeEEEEECCCCeEEEcc-CCCCCc
Q psy10286 477 STVEVFDP--LVGRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGYNGSE------RLSTVEEFDPVRRVWNKVS-PMCFKR 546 (748)
Q Consensus 477 ~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~-~~~~~r 546 (748)
+.+++||+ .+++|..+++|| .+|.++++++++++|||+||..... .++++|+|||.+++|+.++ ++|.+|
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~ 108 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL 108 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc
Confidence 35788885 678999999999 6899999999999999999985321 4678999999999999997 567788
Q ss_pred ceeEEE-EECCEEEEEeCCCCCC----------------------------------CCceEEEEeCCCCeEEEccCCCC
Q psy10286 547 SAVGAA-ALNDKLYVCGGYDGVS----------------------------------SLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 547 ~~~~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
.+++++ +++++||++||.++.. .++++++|||.+++|+.+++||.
T Consensus 109 ~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~ 188 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF 188 (346)
T ss_pred cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCC
Confidence 888777 6899999999986320 24789999999999999999996
Q ss_pred -CCcceEEEEECCEEEEEccCCCCc-ccCeEEEEE--CCCCcEEEccCCCCCC-------cceeEEEECCEEEEEeccCC
Q psy10286 592 -HRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYD--PKTDEWTSVKPMLTKR-------CRLGVAALNNKIYVCGGYDG 660 (748)
Q Consensus 592 -~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd--~~~~~W~~~~~~p~~r-------~~~~~~~~~~~i~v~GG~~~ 660 (748)
+|..+++++++++||++||..... ....++.|| +.+++|+.+++||.+| ..|++++++++|||+||.+.
T Consensus 189 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~ 268 (346)
T TIGR03547 189 LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANF 268 (346)
T ss_pred CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCC
Confidence 689999999999999999985433 234565555 5778999999998765 24557889999999999752
Q ss_pred Cc-----------------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC-CCCCeEEEEe
Q psy10286 661 AI-----------------FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV-SNLPTVEVYD 718 (748)
Q Consensus 661 ~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd 718 (748)
.. ....+++||+++++|+.+++||.+|..+++++++++|||+||.+.. ...++|+.|-
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 269 PGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred CCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 11 1247899999999999999999999999988999999999998754 3456777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=324.36 Aligned_cols=232 Identities=18% Similarity=0.308 Sum_probs=197.0
Q ss_pred cceEEEEe-CCC-CceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeE----EEccCCCCCccee
Q psy10286 476 LSTVEVFD-PLV-GRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVW----NKVSPMCFKRSAV 549 (748)
Q Consensus 476 ~~~~~~yd-~~~-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~r~~~ 549 (748)
.++++.|+ +.. .+|..+++||.+|..+++++++++||++||.++....+++++||+.+++| +.+++||.+|..|
T Consensus 38 ~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 38 YKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred eeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 46778775 332 37999999999999888899999999999988777788999999999988 7789999999999
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
++++++++||++||......++++++||+.+++|+.++++| .+|..|++++++++||++||.++.. ..++++||+.++
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKN 196 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCC
Confidence 99999999999999865556899999999999999999988 4799999999999999999986543 457899999999
Q ss_pred cEEEccCCC---CC--CcceeE-EEECCEEEEEeccCCCc--------------------------------cccEEEEE
Q psy10286 629 EWTSVKPML---TK--RCRLGV-AALNNKIYVCGGYDGAI--------------------------------FLQSVEMY 670 (748)
Q Consensus 629 ~W~~~~~~p---~~--r~~~~~-~~~~~~i~v~GG~~~~~--------------------------------~~~~v~~y 670 (748)
+|+.+++++ .+ +..+++ +..+++|||+||.++.. ..+++++|
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 276 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIY 276 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEE
Confidence 999998753 23 333443 44479999999986431 13689999
Q ss_pred eCCCCcEEEccCCC-CCCcceEEEEECCEEEEEeCCCCC
Q psy10286 671 DPITDEWKMIASMN-VMRSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 671 d~~~~~W~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
|+.+++|+.++++| .+|.+++++.++++||++||....
T Consensus 277 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 277 NVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred ECCCCeeeEcccccccccCchheEEECCEEEEEeccccC
Confidence 99999999999887 589999999999999999997543
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=322.79 Aligned_cols=249 Identities=18% Similarity=0.255 Sum_probs=204.7
Q ss_pred eEEEEeCC--CCceEEccCCC-cccceeEEEEECCEEEEEccCCC------CCCCCeEEEEECCCCeEEEccC-CCCCcc
Q psy10286 478 TVEVFDPL--VGRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGYNG------SERLSTVEEFDPVRRVWNKVSP-MCFKRS 547 (748)
Q Consensus 478 ~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~-~~~~r~ 547 (748)
.++.||+. +++|..++++| .+|.++++++++++|||+||... ....+++|+||+.+++|+.+++ +|.++.
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~ 130 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLA 130 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCccc
Confidence 46788876 47899999998 58999999999999999999864 1236789999999999999985 477788
Q ss_pred eeEEEE-ECCEEEEEeCCCCC----------------------------------CCCceEEEEeCCCCeEEEccCCCC-
Q psy10286 548 AVGAAA-LNDKLYVCGGYDGV----------------------------------SSLNTVECYEPDKDQWRIVKSMQK- 591 (748)
Q Consensus 548 ~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~~~~W~~~~~~~~- 591 (748)
+|++++ .+++||++||.+.. ...+++++||+.+++|+.++++|.
T Consensus 131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~ 210 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL 210 (376)
T ss_pred ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC
Confidence 888777 79999999997531 024789999999999999999996
Q ss_pred CCcceEEEEECCEEEEEccCCCCc-ccCeEE--EEECCCCcEEEccCCCCCCcc--------eeEEEECCEEEEEeccCC
Q psy10286 592 HRSAGGVIAFDSYVYALGGHDGLS-IFDSVE--RYDPKTDEWTSVKPMLTKRCR--------LGVAALNNKIYVCGGYDG 660 (748)
Q Consensus 592 ~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~--~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~ 660 (748)
+|..++++.++++||++||..... ....++ .||+++++|+.+++||.+|.. +.+++++++|||+||.+.
T Consensus 211 ~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~ 290 (376)
T PRK14131 211 GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANF 290 (376)
T ss_pred CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCC
Confidence 788899999999999999974322 233444 567899999999999887642 335678999999999753
Q ss_pred Cc-----------------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC-CCCCeEEEEeCCCC
Q psy10286 661 AI-----------------FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV-SNLPTVEVYDPSTD 722 (748)
Q Consensus 661 ~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd~~~~ 722 (748)
.. ....+++||+.+++|+.++.+|.+|.+++++.++++|||+||...+ ...++|++|+++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 291 PGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred CCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 21 1235789999999999999999999999999999999999998653 46779999999988
Q ss_pred ceEe
Q psy10286 723 SWAF 726 (748)
Q Consensus 723 ~W~~ 726 (748)
.|..
T Consensus 371 ~~~~ 374 (376)
T PRK14131 371 KLTV 374 (376)
T ss_pred EEEE
Confidence 8864
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=321.08 Aligned_cols=247 Identities=19% Similarity=0.230 Sum_probs=205.0
Q ss_pred ccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEEC--CCCeEEEccCCC-CCcceeEEEEECCEEEEEeCCCCC-
Q psy10286 492 AEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP--VRRVWNKVSPMC-FKRSAVGAAALNDKLYVCGGYDGV- 567 (748)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~- 567 (748)
+++||.+|..+++++++++|||+||... +.+++||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence 4688999999888899999999999632 67999996 678999999999 689999999999999999998532
Q ss_pred -----CCCceEEEEeCCCCeEEEcc-CCCCCCcceEEE-EECCEEEEEccCCCCc-------------------------
Q psy10286 568 -----SSLNTVECYEPDKDQWRIVK-SMQKHRSAGGVI-AFDSYVYALGGHDGLS------------------------- 615 (748)
Q Consensus 568 -----~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~------------------------- 615 (748)
..++++++|||.+++|+.++ ++|.+|.+++++ +++++||++||.++..
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 24789999999999999997 466777777776 7899999999985321
Q ss_pred ---------ccCeEEEEECCCCcEEEccCCCC-CCcceeEEEECCEEEEEeccCCCc-cccEEEEEe--CCCCcEEEccC
Q psy10286 616 ---------IFDSVERYDPKTDEWTSVKPMLT-KRCRLGVAALNNKIYVCGGYDGAI-FLQSVEMYD--PITDEWKMIAS 682 (748)
Q Consensus 616 ---------~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~ 682 (748)
..+++++|||.+++|+.+++||. +|..+++++++++|||+||..... ...+++.|| +++++|+.+++
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 13789999999999999999996 688999999999999999976433 234566565 57789999999
Q ss_pred CCCCC-------cceEEEEECCEEEEEeCCCCCC-----------------CCCeEEEEeCCCCceEecCCCCCCCcceE
Q psy10286 683 MNVMR-------SRVALVANMGKLWAIGGYDGVS-----------------NLPTVEVYDPSTDSWAFVAPMCAHEGGVG 738 (748)
Q Consensus 683 ~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 738 (748)
||.+| .+|.+++++++|||+||.+... ...++++||+++++|+.+++||.+|..++
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~ 316 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGV 316 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeE
Confidence 98765 3455778999999999985311 12468999999999999999999999888
Q ss_pred EEEe
Q psy10286 739 VGVI 742 (748)
Q Consensus 739 ~~~~ 742 (748)
++++
T Consensus 317 ~~~~ 320 (346)
T TIGR03547 317 SVSW 320 (346)
T ss_pred EEEc
Confidence 7665
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=311.79 Aligned_cols=245 Identities=16% Similarity=0.230 Sum_probs=205.4
Q ss_pred ccceeEEEEECCEEEEEccCCCC----------CCCCeEEEEE-CCC-CeEEEccCCCCCcceeEEEEECCEEEEEeCCC
Q psy10286 498 LRSRVGVAVMKNRLYAFGGYNGS----------ERLSTVEEFD-PVR-RVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD 565 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~v~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 565 (748)
.++++.++++++.|||+||.+.. ...+++++|+ +.. .+|..+++||.+|.++++++++++||++||.+
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 46788999999999999997632 1345788885 332 37999999999999999999999999999998
Q ss_pred CCCCCceEEEEeCCCCeE----EEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCC-CCC
Q psy10286 566 GVSSLNTVECYEPDKDQW----RIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPML-TKR 640 (748)
Q Consensus 566 ~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r 640 (748)
+...++++++||+.+++| +.++++|.+|..|++++++++||++||..+....+++++||+.+++|+.++++| .+|
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 777789999999999998 788999999999999999999999999865556789999999999999999888 479
Q ss_pred cceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC---CC--CcceE-EEEECCEEEEEeCCCCCC-----
Q psy10286 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN---VM--RSRVA-LVANMGKLWAIGGYDGVS----- 709 (748)
Q Consensus 641 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~--r~~~~-~~~~~~~l~v~GG~~~~~----- 709 (748)
..+++++++++|||+||.++.. ..++++||+++++|+.+++++ .+ +..++ ++..+++|||+||.++..
T Consensus 163 ~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred CcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 9999999999999999986543 457899999999999998753 23 33444 444579999999987421
Q ss_pred ---------------------------CCCeEEEEeCCCCceEecCCCC-CCCcceEEEEee
Q psy10286 710 ---------------------------NLPTVEVYDPSTDSWAFVAPMC-AHEGGVGVGVIP 743 (748)
Q Consensus 710 ---------------------------~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~ 743 (748)
..+++++||+.+++|+.++++| .+|.+++++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEEC
Confidence 1367999999999999999988 589999887763
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >KOG4693|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=272.99 Aligned_cols=230 Identities=24% Similarity=0.430 Sum_probs=196.4
Q ss_pred eEEEEeCCCCceEEccC-------------CCcccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEc---c
Q psy10286 478 TVEVFDPLVGRWQMAEA-------------MSMLRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKV---S 540 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~---~ 540 (748)
++..++..+-+|+++++ .|.-|++|+++.+++++|+.||++. .+.-+.++.|||.+++|.+. .
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G 124 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG 124 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee
Confidence 56666666666666654 3556999999999999999999986 45667899999999999875 4
Q ss_pred CCCCCcceeEEEEECCEEEEEeCCCC--CCCCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCCCC-
Q psy10286 541 PMCFKRSAVGAAALNDKLYVCGGYDG--VSSLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHDGL- 614 (748)
Q Consensus 541 ~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~- 614 (748)
-+|.+|.+|+++++++.+|||||+.. ....+++..+|..|-+|+.+. ..|.-|..|+++++++.+|||||..+.
T Consensus 125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~ 204 (392)
T KOG4693|consen 125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDES 204 (392)
T ss_pred ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccC
Confidence 58999999999999999999999864 345789999999999999985 344558889999999999999998432
Q ss_pred --------cccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccCCC--ccccEEEEEeCCCCcEEEc-
Q psy10286 615 --------SIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQSVEMYDPITDEWKMI- 680 (748)
Q Consensus 615 --------~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~- 680 (748)
...+.+..+|.+|..|...+ ..|.+|..|++.++++++|+|||+++. ...+++|+|||++..|..+
T Consensus 205 gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 205 GPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred CCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee
Confidence 23567889999999999876 367889999999999999999999885 5689999999999999998
Q ss_pred --cCCCCCCcceEEEEECCEEEEEeCCCC
Q psy10286 681 --ASMNVMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 681 --~~~p~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
+.-|.+|..+++++.++++|+|||...
T Consensus 285 ~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 285 VRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 568899999999999999999999653
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=309.39 Aligned_cols=252 Identities=17% Similarity=0.212 Sum_probs=206.9
Q ss_pred ceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECC--CCeEEEccCCC-CCcceeEEEEECCEEEEEeCC
Q psy10286 488 RWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV--RRVWNKVSPMC-FKRSAVGAAALNDKLYVCGGY 564 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~ 564 (748)
.++.+++||.+|..+++++++++|||+||... +.+++||+. +++|..++++| .+|.++++++++++|||+||.
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCC
Confidence 47788999999988899999999999999643 458999986 47899999998 589999999999999999997
Q ss_pred CC------CCCCceEEEEeCCCCeEEEccC-CCCCCcceEEEE-ECCEEEEEccCCCC----------------------
Q psy10286 565 DG------VSSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIA-FDSYVYALGGHDGL---------------------- 614 (748)
Q Consensus 565 ~~------~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~---------------------- 614 (748)
.. ...++++++||+.+++|+.+++ +|.++.+|++++ .+++||++||.+..
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 64 1246899999999999999985 467777788777 89999999997531
Q ss_pred ------------cccCeEEEEECCCCcEEEccCCCC-CCcceeEEEECCEEEEEeccCCCc-cccEEE--EEeCCCCcEE
Q psy10286 615 ------------SIFDSVERYDPKTDEWTSVKPMLT-KRCRLGVAALNNKIYVCGGYDGAI-FLQSVE--MYDPITDEWK 678 (748)
Q Consensus 615 ------------~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~--~yd~~~~~W~ 678 (748)
...+++++||+.+++|+.++++|. +|..++++.++++|||+||..... ...+++ .||+++++|.
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee
Confidence 024789999999999999999996 788899999999999999974332 234444 5678999999
Q ss_pred EccCCCCCCcc--------eEEEEECCEEEEEeCCCCCC-----------------CCCeEEEEeCCCCceEecCCCCCC
Q psy10286 679 MIASMNVMRSR--------VALVANMGKLWAIGGYDGVS-----------------NLPTVEVYDPSTDSWAFVAPMCAH 733 (748)
Q Consensus 679 ~~~~~p~~r~~--------~~~~~~~~~l~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~ 733 (748)
.++++|.+|.+ +.+++++++|||+||.+... ....+++||+++++|+.+++||.+
T Consensus 254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 333 (376)
T PRK14131 254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG 333 (376)
T ss_pred ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC
Confidence 99999887642 33567899999999976321 113578999999999999999999
Q ss_pred CcceEEEEee
Q psy10286 734 EGGVGVGVIP 743 (748)
Q Consensus 734 r~~~~~~~~~ 743 (748)
|.+++++++.
T Consensus 334 r~~~~av~~~ 343 (376)
T PRK14131 334 LAYGVSVSWN 343 (376)
T ss_pred ccceEEEEeC
Confidence 9999887663
|
|
| >KOG4693|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=263.27 Aligned_cols=255 Identities=19% Similarity=0.368 Sum_probs=214.9
Q ss_pred ceEEccCCCcccceeEEEEECCEEEEEccCCCC-----CCCCeEEEEECCCCeEEEccC-------------CCCCccee
Q psy10286 488 RWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGS-----ERLSTVEEFDPVRRVWNKVSP-------------MCFKRSAV 549 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~~-------------~~~~r~~~ 549 (748)
+|+.--.--..|-.|+++.++.+||-|||+-.+ ...-+|.++|..+-+|+.+++ .|..|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 355433334568899999999999999998522 234579999999999999865 46789999
Q ss_pred EEEEECCEEEEEeCCCC-CCCCceEEEEeCCCCeEEEc---cCCCCCCcceEEEEECCEEEEEccCCC--CcccCeEEEE
Q psy10286 550 GAAALNDKLYVCGGYDG-VSSLNTVECYEPDKDQWRIV---KSMQKHRSAGGVIAFDSYVYALGGHDG--LSIFDSVERY 623 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~y 623 (748)
+.+.+++++|+.||.+. .+.-+.+++|||+++.|... .-+|.+|.+|++++.++.+|||||+.. ....++++++
T Consensus 83 tvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred eEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 99999999999999986 55678999999999999775 468999999999999999999999843 3468899999
Q ss_pred ECCCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccCCC---------ccccEEEEEeCCCCcEEEcc---CCCCCCc
Q psy10286 624 DPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYDGA---------IFLQSVEMYDPITDEWKMIA---SMNVMRS 688 (748)
Q Consensus 624 d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~---~~p~~r~ 688 (748)
|..|.+|+.+. ..|.-|..|+++++++.+|||||+... .+-+.+..+|.++..|...+ ..|.+|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999986 345568889999999999999997543 24568899999999999874 3678899
Q ss_pred ceEEEEECCEEEEEeCCCCC--CCCCeEEEEeCCCCceEecC---CCCCCCcceEEEEe
Q psy10286 689 RVALVANMGKLWAIGGYDGV--SNLPTVEVYDPSTDSWAFVA---PMCAHEGGVGVGVI 742 (748)
Q Consensus 689 ~~~~~~~~~~l~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~ 742 (748)
.|++.++++++|+|||+++. ...+++|+|||.+..|+.+. .-|.+|..++||+.
T Consensus 243 SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 243 SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS 301 (392)
T ss_pred ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE
Confidence 99999999999999999874 35579999999999999874 48889999988875
|
|
| >KOG0379|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=276.48 Aligned_cols=251 Identities=24% Similarity=0.419 Sum_probs=221.0
Q ss_pred cCCCcccceeEEEEECCEEEEEccCCCCCCCCe--EEEEECCCCeEEEc---cCCCCCcceeEEEEECCEEEEEeCCCC-
Q psy10286 493 EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLST--VEEFDPVRRVWNKV---SPMCFKRSAVGAAALNDKLYVCGGYDG- 566 (748)
Q Consensus 493 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~- 566 (748)
...|.+|.+|+++.+++++||+||......... +|++|..+..|... ...|.+|++|++++++++||+|||.+.
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 456788999999999999999999876555444 99999999999875 357899999999999999999999884
Q ss_pred CCCCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCCCCc-ccCeEEEEECCCCcEEEcc---CCCCC
Q psy10286 567 VSSLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYDPKTDEWTSVK---PMLTK 639 (748)
Q Consensus 567 ~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~ 639 (748)
...+++++.||+.+++|..+. ..|.+|.+|+++++++++|||||.+... ..+++|+||+++.+|.++. +.|.|
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 567899999999999999885 4688999999999999999999997766 7899999999999999985 67889
Q ss_pred CcceeEEEECCEEEEEeccC-CCccccEEEEEeCCCCcEEEc---cCCCCCCcceEEEEECCEEEEEeCCCCC--CCCCe
Q psy10286 640 RCRLGVAALNNKIYVCGGYD-GAIFLQSVEMYDPITDEWKMI---ASMNVMRSRVALVANMGKLWAIGGYDGV--SNLPT 713 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~~ 713 (748)
|.+|++++++++++++||.+ +..+++++|++|..+.+|..+ +..|.+|.+|..+..+++++++||.... ....+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~ 294 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD 294 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence 99999999999999999988 677899999999999999976 5689999999999999999999998764 25789
Q ss_pred EEEEeCCCCceEecCCC----CCCCcceEEEEee
Q psy10286 714 VEVYDPSTDSWAFVAPM----CAHEGGVGVGVIP 743 (748)
Q Consensus 714 v~~yd~~~~~W~~~~~~----~~~r~~~~~~~~~ 743 (748)
++.||.+++.|..+... |.+|..++.+.+.
T Consensus 295 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
T KOG0379|consen 295 LYGLDLETLVWSKVESVGVVRPSPRLGHAAELID 328 (482)
T ss_pred cccccccccceeeeeccccccccccccccceeec
Confidence 99999999999987554 4677777766554
|
|
| >KOG4350|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=255.28 Aligned_cols=232 Identities=23% Similarity=0.384 Sum_probs=194.3
Q ss_pred cchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccc
Q psy10286 53 QQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIP 132 (748)
Q Consensus 53 ~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 132 (748)
........+.+.+.+++-+..++||+|++++++|+|||+|||+||.|||+|+.+++.|+.+..|++
T Consensus 23 ~~~~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL-------------- 88 (620)
T KOG4350|consen 23 ESAAISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL-------------- 88 (620)
T ss_pred hhhhhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--------------
Confidence 344566777889999999999999999999999999999999999999999999999998888877
Q ss_pred ccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCccc
Q psy10286 133 YFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVL 212 (748)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl 212 (748)
++...++|+.+|+|||||++.+....
T Consensus 89 --------------------q~t~~eAF~~lLrYiYtg~~~l~~~~---------------------------------- 114 (620)
T KOG4350|consen 89 --------------------QETNSEAFRALLRYIYTGKIDLAGVE---------------------------------- 114 (620)
T ss_pred --------------------ccccHHHHHHHHHHHhhcceecccch----------------------------------
Confidence 78889999999999999999865431
Q ss_pred chhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHH
Q psy10286 213 DYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEA 292 (748)
Q Consensus 213 ~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~ 292 (748)
.+-..+.+..|..|++.+|.....+||++.|..+|++.++..|..|+..+|...
T Consensus 115 --------------------------ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~ 168 (620)
T KOG4350|consen 115 --------------------------EDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDY 168 (620)
T ss_pred --------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHH
Confidence 111234445555555555555566666666777788888888888888889999
Q ss_pred HHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCChHHHH
Q psy10286 293 ADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLA 372 (748)
Q Consensus 293 ~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~~~l~ 372 (748)
|+.|+.+|..+++.++.|..|+.+.|.+++.+|.+. ..|.++|.|+.+|.++|.+ .....+++.+|+|+|+...|.
T Consensus 169 C~mfmDrnA~~lL~~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~Nsk---e~~k~~~~~VRLPLm~lteLL 244 (620)
T KOG4350|consen 169 CMMFMDRNADQLLEDPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNNSK---EASKVLLELVRLPLMTLTELL 244 (620)
T ss_pred HHHHHhcCHHhhhcCcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcCch---hhHHHHHHHHhhhhccHHHHH
Confidence 999999999999999999999999999999999985 5899999999999998863 455778999999999999999
Q ss_pred hhhccchhhc
Q psy10286 373 DRVATEALIR 382 (748)
Q Consensus 373 ~~~~~~~l~~ 382 (748)
..+....++.
T Consensus 245 nvVRPsGlls 254 (620)
T KOG4350|consen 245 NVVRPSGLLS 254 (620)
T ss_pred hccCcccCcC
Confidence 8887766653
|
|
| >KOG0379|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=258.41 Aligned_cols=252 Identities=21% Similarity=0.268 Sum_probs=207.6
Q ss_pred eEEEEeCCCCceEEcc---CCCcccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEcc---CCCCCcceeE
Q psy10286 478 TVEVFDPLVGRWQMAE---AMSMLRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVS---PMCFKRSAVG 550 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~---~~~~~r~~~~ 550 (748)
++|.+|..+..|.... ..|.+|.+|+++.++++||+|||.+. ....++++.||+.|++|..+. .+|.+|.+|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 6999999999997764 46789999999999999999999984 566789999999999999874 4689999999
Q ss_pred EEEECCEEEEEeCCCCCC-CCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCC-CCcccCeEEEEEC
Q psy10286 551 AAALNDKLYVCGGYDGVS-SLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHD-GLSIFDSVERYDP 625 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~ 625 (748)
++++++++|||||.+... .++++++||+.+.+|.++. +.|.||.+|+++++++++++|||.+ +...++++|.+|.
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl 248 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL 248 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec
Confidence 999999999999998655 8999999999999999884 6788999999999999999999997 6778999999999
Q ss_pred CCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccCCC--ccccEEEEEeCCCCcEEEccC----CCCCCcceEEEEEC
Q psy10286 626 KTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQSVEMYDPITDEWKMIAS----MNVMRSRVALVANM 696 (748)
Q Consensus 626 ~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~~~~~~~ 696 (748)
.+.+|..+. ..|.+|..|.++..+++++++||.... ..+.++|.||..+..|..+.. .|.+|..+..+..+
T Consensus 249 ~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
T KOG0379|consen 249 STWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELID 328 (482)
T ss_pred ccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeec
Confidence 999999765 578999999999999999999998764 368899999999999999843 46778888777664
Q ss_pred C----EEEEEeCCCC-CCCCCeEEEE----eCCCCceEecCC
Q psy10286 697 G----KLWAIGGYDG-VSNLPTVEVY----DPSTDSWAFVAP 729 (748)
Q Consensus 697 ~----~l~v~GG~~~-~~~~~~v~~y----d~~~~~W~~~~~ 729 (748)
. ...++||... ....++++.. ...++.|...+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (482)
T KOG0379|consen 329 ELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNEVQEPGT 370 (482)
T ss_pred cCCccceeeecCccccccchhhcccccccccccCCccccccc
Confidence 3 3444444221 1223344432 344566665543
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=240.71 Aligned_cols=257 Identities=20% Similarity=0.335 Sum_probs=210.9
Q ss_pred CCccCCCccCC---cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCC
Q psy10286 409 GEKTTPRRCNY---VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPL 485 (748)
Q Consensus 409 ~~~~~~r~~~~---~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~ 485 (748)
++.++||.+|- +.+.|++|||-+. ...++++.||..
T Consensus 27 GPvPrpRHGHRAVaikELiviFGGGNE-----------------------------------------GiiDELHvYNTa 65 (830)
T KOG4152|consen 27 GPVPRPRHGHRAVAIKELIVIFGGGNE-----------------------------------------GIIDELHVYNTA 65 (830)
T ss_pred CCCCCccccchheeeeeeEEEecCCcc-----------------------------------------cchhhhhhhccc
Confidence 34566676653 7889999999533 456889999999
Q ss_pred CCceEEc---cCCCcccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEcc-------CCCCCcceeEEEEE
Q psy10286 486 VGRWQMA---EAMSMLRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVS-------PMCFKRSAVGAAAL 554 (748)
Q Consensus 486 ~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~ 554 (748)
+++|..- ++.|.+-..|+.+..+.+||+|||... +.+.++++.+......|+++. ++|.||-+|+...+
T Consensus 66 tnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~ 145 (830)
T KOG4152|consen 66 TNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV 145 (830)
T ss_pred cceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEe
Confidence 9999754 578888889999999999999999863 456777776666666777762 47899999999999
Q ss_pred CCEEEEEeCCCC---------CCCCceEEEEeCCCC----eEEEc---cCCCCCCcceEEEEE------CCEEEEEccCC
Q psy10286 555 NDKLYVCGGYDG---------VSSLNTVECYEPDKD----QWRIV---KSMQKHRSAGGVIAF------DSYVYALGGHD 612 (748)
Q Consensus 555 ~~~iyv~GG~~~---------~~~~~~~~~yd~~~~----~W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~ 612 (748)
+++-|+|||..+ ..++++++..+...+ .|... ..+|.+|..|+++.+ ..++||+||.+
T Consensus 146 gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~ 225 (830)
T KOG4152|consen 146 GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS 225 (830)
T ss_pred ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc
Confidence 999999999642 236899999987754 38765 578999999999998 34899999997
Q ss_pred CCcccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccC-----CC---------ccccEEEEEeCCCC
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYD-----GA---------IFLQSVEMYDPITD 675 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~-----~~---------~~~~~v~~yd~~~~ 675 (748)
|. ++.++|.+|.++-.|.+.. -.|.||+.|+++.+++++|||||+- .. ...+++-++|+.+.
T Consensus 226 G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~ 304 (830)
T KOG4152|consen 226 GC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM 304 (830)
T ss_pred cc-cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch
Confidence 75 4889999999999999875 4688999999999999999999962 11 23568889999999
Q ss_pred cEEEc-------cCCCCCCcceEEEEECCEEEEEeCCCC
Q psy10286 676 EWKMI-------ASMNVMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 676 ~W~~~-------~~~p~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
.|..+ ...|.+|.+|+++.++.++|+..|+++
T Consensus 305 ~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 305 AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred heeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 99987 237899999999999999999999876
|
|
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=227.63 Aligned_cols=204 Identities=21% Similarity=0.314 Sum_probs=174.3
Q ss_pred ceEEEEeCCCCceEEc--cCCCcccceeEEEEE-CCEEEEEccCCCC------CCCCeEEEEECCCCeEEEcc--CCCCC
Q psy10286 477 STVEVFDPLVGRWQMA--EAMSMLRSRVGVAVM-KNRLYAFGGYNGS------ERLSTVEEFDPVRRVWNKVS--PMCFK 545 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~--~~~~~ 545 (748)
++++.||..+++|+.+ ++.|.||+.|+++++ .|.+|+|||.-.+ ....++|.||..+++|+++. .-|.+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 7899999999999887 456789999999988 4899999996421 24679999999999999884 46899
Q ss_pred cceeEEEEECCEEEEEeCCCC----CCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEE-CCEEEEEccCCC----
Q psy10286 546 RSAVGAAALNDKLYVCGGYDG----VSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAF-DSYVYALGGHDG---- 613 (748)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~---- 613 (748)
|++|.+++...+|++|||+-. ..++|++|+||+++-+|+.+.+ -|.||.+|++.+. +|.|||.||++.
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~k 257 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVK 257 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhh
Confidence 999999999999999999753 2368999999999999999854 4789999999999 999999999842
Q ss_pred -----CcccCeEEEEECCC-----CcEEEccC---CCCCCcceeEEEE-CCEEEEEeccCC---------CccccEEEEE
Q psy10286 614 -----LSIFDSVERYDPKT-----DEWTSVKP---MLTKRCRLGVAAL-NNKIYVCGGYDG---------AIFLQSVEMY 670 (748)
Q Consensus 614 -----~~~~~~~~~yd~~~-----~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~---------~~~~~~v~~y 670 (748)
....+++|.++|.. -+|+++.+ -|.||.++++++. +++-|.|||... ..+.|++|.|
T Consensus 258 K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~f 337 (521)
T KOG1230|consen 258 KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFF 337 (521)
T ss_pred hhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhhe
Confidence 23578999999998 67999874 5899999999988 559999999643 2368999999
Q ss_pred eCCCCcEEEc
Q psy10286 671 DPITDEWKMI 680 (748)
Q Consensus 671 d~~~~~W~~~ 680 (748)
|...++|...
T Consensus 338 dlt~nrW~~~ 347 (521)
T KOG1230|consen 338 DLTRNRWSEG 347 (521)
T ss_pred ecccchhhHh
Confidence 9999999864
|
|
| >KOG1230|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=226.88 Aligned_cols=235 Identities=19% Similarity=0.297 Sum_probs=197.1
Q ss_pred cCCCcccceeEEEEE--CCEEEEEccCC--CC--CCCCeEEEEECCCCeEEEc--cCCCCCcceeEEEEE-CCEEEEEeC
Q psy10286 493 EAMSMLRSRVGVAVM--KNRLYAFGGYN--GS--ERLSTVEEFDPVRRVWNKV--SPMCFKRSAVGAAAL-NDKLYVCGG 563 (748)
Q Consensus 493 ~~~~~~r~~~~~~~~--~~~iyv~GG~~--~~--~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~GG 563 (748)
.+.|.||.++++.+. .+.+++|||.- +. ...+++++||..+++|+.+ ++.|.||+.|.++++ .|.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 456789999988876 56899999953 22 2468999999999999987 567899999999998 489999999
Q ss_pred CCC------CCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEEECCEEEEEccCCCC----cccCeEEEEECCCCcEE
Q psy10286 564 YDG------VSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIAFDSYVYALGGHDGL----SIFDSVERYDPKTDEWT 631 (748)
Q Consensus 564 ~~~------~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 631 (748)
--. .....++|.||..+++|+++. .-|.+|.+|-+++...+|++|||+... .++|++|+||+.+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 532 124689999999999999985 468899999999999999999998432 36899999999999999
Q ss_pred EccC---CCCCCcceeEEEE-CCEEEEEeccCCC---------ccccEEEEEeCCC-----CcEEEc---cCCCCCCcce
Q psy10286 632 SVKP---MLTKRCRLGVAAL-NNKIYVCGGYDGA---------IFLQSVEMYDPIT-----DEWKMI---ASMNVMRSRV 690 (748)
Q Consensus 632 ~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~---------~~~~~v~~yd~~~-----~~W~~~---~~~p~~r~~~ 690 (748)
++.+ .|.+|+++++.+. +|.|||.||+... ...+++|.+++.. -.|+.+ +.-|.||.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9863 5899999999998 9999999998532 3467999999988 678887 4578999999
Q ss_pred EEEEE-CCEEEEEeCCCC---------CCCCCeEEEEeCCCCceEec
Q psy10286 691 ALVAN-MGKLWAIGGYDG---------VSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 691 ~~~~~-~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~ 727 (748)
++++. +++-+.|||..+ +...++++.||...++|...
T Consensus 301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 99887 679999999865 12568999999999999864
|
|
| >KOG4152|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=229.85 Aligned_cols=253 Identities=16% Similarity=0.227 Sum_probs=208.7
Q ss_pred ceEEc----cCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEc---cCCCCCcceeEEEEECCEEEE
Q psy10286 488 RWQMA----EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV---SPMCFKRSAVGAAALNDKLYV 560 (748)
Q Consensus 488 ~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv 560 (748)
+|+++ ++.|.+|.+|-++++..-|.+|||-+. +..+.+.+||..+++|..- .++|.+-..|+.+..+.+||+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 68776 467899999999999999999999543 3567899999999999754 578889999999999999999
Q ss_pred EeCCCC-CCCCceEEEEeCCCCeEEEcc-------CCCCCCcceEEEEECCEEEEEccCCCC---------cccCeEEEE
Q psy10286 561 CGGYDG-VSSLNTVECYEPDKDQWRIVK-------SMQKHRSAGGVIAFDSYVYALGGHDGL---------SIFDSVERY 623 (748)
Q Consensus 561 ~GG~~~-~~~~~~~~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~~~~y 623 (748)
|||... ..+.|+++......-.|+.+. +.|.||-+|+...++++.|+|||..++ .+++++|..
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 999875 346787777766666777763 467899999999999999999997322 358899998
Q ss_pred ECCCC----cEEEc---cCCCCCCcceeEEEE------CCEEEEEeccCCCccccEEEEEeCCCCcEEEc---cCCCCCC
Q psy10286 624 DPKTD----EWTSV---KPMLTKRCRLGVAAL------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI---ASMNVMR 687 (748)
Q Consensus 624 d~~~~----~W~~~---~~~p~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r 687 (748)
+...+ .|... ..+|.+|..|.++++ ..++||+||.++. .+.++|.+|+++..|.+. +..|.+|
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPR 255 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPR 255 (830)
T ss_pred EeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCc
Confidence 87644 48764 368999999999998 2479999998875 488999999999999986 5678899
Q ss_pred cceEEEEECCEEEEEeCCCC----C----------CCCCeEEEEeCCCCceEec-------CCCCCCCcceEEEEe
Q psy10286 688 SRVALVANMGKLWAIGGYDG----V----------SNLPTVEVYDPSTDSWAFV-------APMCAHEGGVGVGVI 742 (748)
Q Consensus 688 ~~~~~~~~~~~l~v~GG~~~----~----------~~~~~v~~yd~~~~~W~~~-------~~~~~~r~~~~~~~~ 742 (748)
+-|+++.+++++|||||+-- + ...++.-++++.+..|..+ ...|++|.+|+++.+
T Consensus 256 SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 256 SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred ccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence 99999999999999999731 1 1346788999999999854 238999999998765
|
|
| >KOG2075|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=194.49 Aligned_cols=230 Identities=21% Similarity=0.380 Sum_probs=186.9
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEECC-----eEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVDD-----QSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAAT 130 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~~-----~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 130 (748)
-....+.+....++++...+||.|++++ +.|||||.|||..|.+|.+||.+++.+....
T Consensus 96 ~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~---------------- 159 (521)
T KOG2075|consen 96 AQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASL---------------- 159 (521)
T ss_pred cchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCc----------------
Confidence 3446677788899999999999999963 7999999999999999999999998876444
Q ss_pred ccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCc
Q psy10286 131 IPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNN 210 (748)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~n 210 (748)
+|+++++++.+|..+|+|+|+.++.+..+++..++.+|+.|-++.|.+.|.+||+.++-+.|
T Consensus 160 ------------------ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~n 221 (521)
T KOG2075|consen 160 ------------------EIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADN 221 (521)
T ss_pred ------------------eeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChH
Confidence 45559999999999999999999999999999999999999999999999999888644433
Q ss_pred ccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 211 VLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 211 cl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
. +.+|.+.|..+ ...+|.
T Consensus 222 a------------------------------f~~L~q~A~lf--------------------------------~ep~Li 239 (521)
T KOG2075|consen 222 A------------------------------FLELFQRAKLF--------------------------------DEPSLI 239 (521)
T ss_pred H------------------------------HHHHHHHHHhh--------------------------------cCHHHH
Confidence 2 23333334444 445666
Q ss_pred HHHHHHHHHhhhhhccCcccccCC--HHhHhcccccCCcCCCChHHHHHHHHHHHhcC---------ccCCCCCHHHHHh
Q psy10286 291 EAADKYVQQYFHEVSMSDEFIGLG--VNEVNDIVKRSELHLMSEEQVFEAVMRWVKHN---------ASERAPSLPRLLA 359 (748)
Q Consensus 291 ~~~~~~i~~~~~~l~~~~~f~~L~--~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~---------~~~r~~~~~~l~~ 359 (748)
+.|++-|..++...+..+.|..+. .+.++++++++.+.+. |..+|+|+++|.... ...+...+.+.+.
T Consensus 240 ~~c~e~id~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~ 318 (521)
T KOG2075|consen 240 SICLEVIDKSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALS 318 (521)
T ss_pred HHHHHHhhhHHHhhhCccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccchhhhhhheee
Confidence 666666778889999999999998 9999999999999874 999999999998742 2344567788888
Q ss_pred hccCCCCChHHHHhhhccchhhc
Q psy10286 360 AVRLPLLSPHYLADRVATEALIR 382 (748)
Q Consensus 360 ~vR~~~l~~~~l~~~~~~~~l~~ 382 (748)
.+|||.|..+.+...+.+.++..
T Consensus 319 lirfp~m~~Eefa~~~e~sgIl~ 341 (521)
T KOG2075|consen 319 LIRFPFMNIEEFARGVEQSGILT 341 (521)
T ss_pred eecccccchhhhccCccccCCcc
Confidence 99999999988876665555543
|
|
| >KOG4682|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=178.67 Aligned_cols=187 Identities=19% Similarity=0.355 Sum_probs=161.3
Q ss_pred HHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccc
Q psy10286 64 VMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMA 143 (748)
Q Consensus 64 ~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (748)
-+++|+.+++-+||++.+-|.+...||..|+ .|+||.+||+|.|+|+....|.+
T Consensus 59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIql------------------------- 112 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQL------------------------- 112 (488)
T ss_pred HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEE-------------------------
Confidence 3788999999999999999999999999997 48999999999999999988887
Q ss_pred cccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHH
Q psy10286 144 ESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAM 223 (748)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~ 223 (748)
+|..+.|+..+|..++.-+|.+++.|+.+.|..++++|.++|++.|.+.|.+.|+..+.++|.
T Consensus 113 -----eI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta------------ 175 (488)
T KOG4682|consen 113 -----EIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTA------------ 175 (488)
T ss_pred -----EcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhh------------
Confidence 556688999999999999999999999999999999999999999999998888886555444
Q ss_pred HHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhh
Q psy10286 224 EALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHE 303 (748)
Q Consensus 224 ~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~ 303 (748)
+.++..+..|+.+.|.+.|++|+..|+..
T Consensus 176 ---------------------------------------------------~~yYea~ckYgle~vk~kc~ewl~~nl~~ 204 (488)
T KOG4682|consen 176 ---------------------------------------------------CGYYEAACKYGLESVKKKCLEWLLNNLMT 204 (488)
T ss_pred ---------------------------------------------------hHhhhhhhhhhhHHHHHHHHHHHHHhhHh
Confidence 33444455566667777777777778777
Q ss_pred hccCcccccCCHHhHhcccccCCcCCCC-hHHHHHHHHHHHh
Q psy10286 304 VSMSDEFIGLGVNEVNDIVKRSELHLMS-EEQVFEAVMRWVK 344 (748)
Q Consensus 304 l~~~~~f~~L~~~~l~~il~~~~l~~~~-E~~v~~~v~~W~~ 344 (748)
+.....|..++.+.+..++.+++|.+-+ |.+++..+..|+-
T Consensus 205 i~~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 205 IQNVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred hhhHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 7776688889999999999999997655 9999999999975
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=158.93 Aligned_cols=243 Identities=19% Similarity=0.291 Sum_probs=182.8
Q ss_pred CccceEEEEeCCC--CceEEccCCC-cccceeEEEEECCEEEEEccCCCC-----CCCCeEEEEECCCCeEEEccC-CCC
Q psy10286 474 DSLSTVEVFDPLV--GRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGYNGS-----ERLSTVEEFDPVRRVWNKVSP-MCF 544 (748)
Q Consensus 474 ~~~~~~~~yd~~~--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~~-~~~ 544 (748)
..-...+..|... ..|++++..| .+|.+..+++++++||||||.... ...+++++|||.+|+|..+.. .|.
T Consensus 55 s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~ 134 (381)
T COG3055 55 SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPT 134 (381)
T ss_pred cCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccc
Confidence 3345667777665 4799999988 679999999999999999998632 236899999999999998854 567
Q ss_pred CcceeEEEEECC-EEEEEeCCCC----------------------------------CCCCceEEEEeCCCCeEEEccCC
Q psy10286 545 KRSAVGAAALND-KLYVCGGYDG----------------------------------VSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 545 ~r~~~~~~~~~~-~iyv~GG~~~----------------------------------~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
...++.++.+++ +||++||.+. ......+..|||.++.|+.+...
T Consensus 135 gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~ 214 (381)
T COG3055 135 GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN 214 (381)
T ss_pred ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC
Confidence 788899999977 9999999631 01246778999999999999876
Q ss_pred C-CCCcceEEEEECCEEEEEccCCCCc-ccCeEEEEECC--CCcEEEccCCCCCCcce-------eEEEECCEEEEEecc
Q psy10286 590 Q-KHRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYDPK--TDEWTSVKPMLTKRCRL-------GVAALNNKIYVCGGY 658 (748)
Q Consensus 590 ~-~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~--~~~W~~~~~~p~~r~~~-------~~~~~~~~i~v~GG~ 658 (748)
| .++++.+.+.-++++.++-|.-..+ +...+.+++.. .-+|..++++|.+-..- -.-..++.+.|.||-
T Consensus 215 pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 215 PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 6 4677766666688899998874333 35566777765 45799998877654432 112236788888884
Q ss_pred CC-------------------CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCC-CCCeEEEEe
Q psy10286 659 DG-------------------AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS-NLPTVEVYD 718 (748)
Q Consensus 659 ~~-------------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~v~~yd 718 (748)
+= ....++||.+| .+.|+.++.+|.++.+..++..++.||++||-+..+ ....|+.+-
T Consensus 295 nF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 295 NFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred CChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence 31 01346899998 899999999999999999999999999999976544 344555443
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-18 Score=151.28 Aligned_cols=107 Identities=32% Similarity=0.661 Sum_probs=93.8
Q ss_pred HHHHHhcCCcccEEEEEC-CeEEeeeeeeeeccCHHHHHhhccc-ccccccceeeeecchheehhhcccccccccccccc
Q psy10286 65 MEEIRRQGKLCDVTIKVD-DQSFTCHRIVLAATIPYFQAMFTSD-MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDM 142 (748)
Q Consensus 65 l~~l~~~~~~~Dv~i~~~-~~~~~aHk~iL~a~S~~F~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (748)
|+++++++.++|++|.++ +++|+|||.||+++|+||++||.+. +.+.....
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~--------------------------- 53 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPE--------------------------- 53 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEE---------------------------
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccc---------------------------
Confidence 578999999999999999 8999999999999999999999986 34433333
Q ss_pred ccccceeeeecCCCHHHHHHHHHhhhceeEEee-chhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 143 AESKQREITMQGIDAVAMEALINFVYSGRVTIH-SQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 143 ~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~-~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|.++++++++|+.+|+|+|+|++.++ .+++.+++.+|++|+++.|++.|.++|.++
T Consensus 54 -------i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 54 -------ISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -------EEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------cccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 44499999999999999999999999 999999999999999999999999999874
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-18 Score=180.01 Aligned_cols=241 Identities=13% Similarity=0.243 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHhcC----CcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccccc
Q psy10286 59 SQGFPVMEEIRRQG----KLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYF 134 (748)
Q Consensus 59 ~~~~~~l~~l~~~~----~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 134 (748)
+.+...+.+|+... .+.||||.|++..|+|||.|||+||++||++|....+.+....|.+.++
T Consensus 539 s~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~------------- 605 (1267)
T KOG0783|consen 539 SNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEI------------- 605 (1267)
T ss_pred ccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecc-------------
Confidence 34556677776655 6779999999999999999999999999999988766666666766443
Q ss_pred ccccccccccccceeeeecCCCHHHHHHHHHhhhceeEE--------------eechhHHH-------HHHHHHHhcchh
Q psy10286 135 QAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVT--------------IHSQNVQS-------LMVVASFLQMQK 193 (748)
Q Consensus 135 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~--------------i~~~~v~~-------ll~~A~~l~i~~ 193 (748)
.+....|.++++++..|+.+|+||||+.+- .-.+|... +.-.++.|++.+
T Consensus 606 ---------~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~e 676 (1267)
T KOG0783|consen 606 ---------TQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAE 676 (1267)
T ss_pred ---------cccCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHh
Confidence 345567788999999999999999999542 11223333 777788888877
Q ss_pred HHHHHHHHhhhc----------------------------------ccCCcccchhhh----------------------
Q psy10286 194 VADACADFLKKR----------------------------------FHPNNVLDYYVL---------------------- 217 (748)
Q Consensus 194 l~~~c~~~l~~~----------------------------------l~~~ncl~i~~~---------------------- 217 (748)
|......+--.+ +....|.-..++
T Consensus 677 l~~~~~s~~~~~~~~n~ia~~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~ 756 (1267)
T KOG0783|consen 677 LLPFSVSRQPLLSLTNDIAQLYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS 756 (1267)
T ss_pred hhhhhhhccchhhcccHHHHHhcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC
Confidence 776543322110 111222211111
Q ss_pred -hhhhHHHHHHHhhcc-eeEEE-----ecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 218 -FSCRAMEALINFAYS-GRVTI-----HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 218 -~~~~~~~~ll~~~y~-~~~~~-----~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
.....++.+++|+|+ ....+ ..+-+.+++..||.+.+.+|+.+|+.-|.+.|+..+|-.++.+|..|++.+|+
T Consensus 757 p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~ 836 (1267)
T KOG0783|consen 757 PLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELY 836 (1267)
T ss_pred cchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHH
Confidence 012467889999994 33221 23346889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCcccccCCHHhHhcc
Q psy10286 291 EAADKYVQQYFHEVSMSDEFIGLGVNEVNDI 321 (748)
Q Consensus 291 ~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~i 321 (748)
..|++||++|+..++.-....+++-..|..+
T Consensus 837 ~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 837 SRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred HHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 9999999999999988777777766655543
|
|
| >COG3055 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=154.07 Aligned_cols=245 Identities=19% Similarity=0.243 Sum_probs=182.4
Q ss_pred EEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC--CeEEEccCCC-CCcceeEEEEECCEEEEEeCCCC
Q psy10286 490 QMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR--RVWNKVSPMC-FKRSAVGAAALNDKLYVCGGYDG 566 (748)
Q Consensus 490 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~ 566 (748)
.++|++|.+-.+-+-+.+++.+||-=|..+ ...+..|... ..|+.++..| .+|....+++++++||+|||...
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 346788888766677888899999766333 3566777664 5799999877 67999999999999999999763
Q ss_pred C-----CCCceEEEEeCCCCeEEEccC-CCCCCcceEEEEECC-EEEEEccCCCC-------------------------
Q psy10286 567 V-----SSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIAFDS-YVYALGGHDGL------------------------- 614 (748)
Q Consensus 567 ~-----~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~-~iyv~GG~~~~------------------------- 614 (748)
. ..++++++|||.+|+|+++.. .|....+++++.+++ +||++||.+..
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 2 247999999999999999964 455677888888877 99999996321
Q ss_pred ---------cccCeEEEEECCCCcEEEccCCC-CCCcceeEEEECCEEEEEeccCCCc-cccEEEEEeCC--CCcEEEcc
Q psy10286 615 ---------SIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAALNNKIYVCGGYDGAI-FLQSVEMYDPI--TDEWKMIA 681 (748)
Q Consensus 615 ---------~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~--~~~W~~~~ 681 (748)
.....+..|||.+++|+.+...| .++++.+.+.-++++.++-|.-... ....+++++.. ..+|..++
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 12457899999999999998666 4566655555578888888864332 34566677665 45799998
Q ss_pred CCCCCCcce-------EEEEECCEEEEEeCCCCC-------------------CCCCeEEEEeCCCCceEecCCCCCCCc
Q psy10286 682 SMNVMRSRV-------ALVANMGKLWAIGGYDGV-------------------SNLPTVEVYDPSTDSWAFVAPMCAHEG 735 (748)
Q Consensus 682 ~~p~~r~~~-------~~~~~~~~l~v~GG~~~~-------------------~~~~~v~~yd~~~~~W~~~~~~~~~r~ 735 (748)
++|.+...- -.-..++.+.|.||.+-. ...++|+++| ++.|+.++.||.+++
T Consensus 264 ~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~ 341 (381)
T COG3055 264 DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA 341 (381)
T ss_pred CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc
Confidence 888764321 122347889999995411 1345789988 899999999999887
Q ss_pred ceEEE
Q psy10286 736 GVGVG 740 (748)
Q Consensus 736 ~~~~~ 740 (748)
+-..+
T Consensus 342 YG~s~ 346 (381)
T COG3055 342 YGVSL 346 (381)
T ss_pred ceEEE
Confidence 65544
|
|
| >KOG4591|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-17 Score=143.90 Aligned_cols=171 Identities=19% Similarity=0.385 Sum_probs=126.1
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEEC---CeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVD---DQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIP 132 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~---~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 132 (748)
++.+.++.--..|++.+.|+|++|.++ ++.++|||.||||||.+.. |...-.| ++
T Consensus 48 SF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-ks------------------- 105 (280)
T KOG4591|consen 48 SFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KS------------------- 105 (280)
T ss_pred hHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-ch-------------------
Confidence 567888888899999999999999997 4789999999999998765 2211111 11
Q ss_pred ccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechh--HHHHHHHHHHhcchhHHHHHHHHhhhcccCCc
Q psy10286 133 YFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQN--VQSLMVVASFLQMQKVADACADFLKKRFHPNN 210 (748)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~--v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~n 210 (748)
.+..++++++++|..+|+|+||++++...++ +.++..+|+.||++.|++.|+.
T Consensus 106 ---------------e~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k---------- 160 (280)
T KOG4591|consen 106 ---------------EELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEK---------- 160 (280)
T ss_pred ---------------hhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1223389999999999999999999876654 5555555555555555555544
Q ss_pred ccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 211 VLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 211 cl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
-+-..+.++||+.++.+|+.++...|.
T Consensus 161 -----------------------------------------------------~l~a~l~V~NCIk~Ye~AEe~n~~qL~ 187 (280)
T KOG4591|consen 161 -----------------------------------------------------GLGALLHVDNCIKFYEFAEELNARQLM 187 (280)
T ss_pred -----------------------------------------------------HHhhHhhHhhHHHHHHHHHHhhHHHHH
Confidence 444445566666667777777778888
Q ss_pred HHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCc
Q psy10286 291 EAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSEL 327 (748)
Q Consensus 291 ~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l 327 (748)
..|-..|..+...+ ...+|.+|++..|-.++....-
T Consensus 188 n~~~eiIA~~W~dL-~~a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 188 NVAAEIIAGAWDDL-GKADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHHHHHhhcccc-ChHHHHhccHHHHHHHHcCCCc
Confidence 88888887777664 4578999999999999887654
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=99.57 E-value=4e-15 Score=124.49 Aligned_cols=90 Identities=37% Similarity=0.738 Sum_probs=81.6
Q ss_pred cEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
||+|.+++++|++||.+|+++|+||++||.+.+.+.....+. ++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~----------------------------------l~~~ 46 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIY----------------------------------LDDV 46 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEE----------------------------------ecCC
Confidence 789999999999999999999999999999876655444444 4889
Q ss_pred CHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHH
Q psy10286 156 DAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACA 199 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~ 199 (748)
++++|+.+|+|+|++++.++..++.+++.+|++|+++.|.+.|+
T Consensus 47 ~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 47 SPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 99999999999999999999999999999999999999999984
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG2437|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-15 Score=150.91 Aligned_cols=235 Identities=17% Similarity=0.265 Sum_probs=171.8
Q ss_pred CcccceeEEEEECC--EEEEEccCCCCCCCCeEEEEECCCCeEEEc---cCCCCCcceeEEEEECC--EEEEEeCCCCC-
Q psy10286 496 SMLRSRVGVAVMKN--RLYAFGGYNGSERLSTVEEFDPVRRVWNKV---SPMCFKRSAVGAAALND--KLYVCGGYDGV- 567 (748)
Q Consensus 496 ~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~--~iyv~GG~~~~- 567 (748)
|..|.+|.++...+ .||+.||++|-..+.++|.|+...+.|..+ ...|..|..|.++..-. ++|+.|-+-+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 56699999999855 999999999999999999999999999987 34789999999998744 99999976432
Q ss_pred -----CCCceEEEEeCCCCeEEEcc------CCCCCCcceEEEEECCE--EEEEccCCC---CcccCeEEEEECCCCcEE
Q psy10286 568 -----SSLNTVECYEPDKDQWRIVK------SMQKHRSAGGVIAFDSY--VYALGGHDG---LSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 568 -----~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~---~~~~~~~~~yd~~~~~W~ 631 (748)
....++|+||.+++.|..+. .-|...+.|.+++.+.+ |||+||... ......++.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 23578999999999998874 24566788999999877 999999832 235778999999999998
Q ss_pred EccC----------CCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-------CCCCCCcceEE
Q psy10286 632 SVKP----------MLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-------SMNVMRSRVAL 692 (748)
Q Consensus 632 ~~~~----------~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-------~~p~~r~~~~~ 692 (748)
.+.. ....|.+|.+-.+ +.++|++||......++-...||+....=..+. ++...+....-
T Consensus 418 ~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qR 497 (723)
T KOG2437|consen 418 LLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQR 497 (723)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhhh
Confidence 7642 2345777776555 678999999877666666667766543322221 11111111111
Q ss_pred EE---ECCEEEEEeCCCCC------CCCCeEEEEeCCCCceEecCCC
Q psy10286 693 VA---NMGKLWAIGGYDGV------SNLPTVEVYDPSTDSWAFVAPM 730 (748)
Q Consensus 693 ~~---~~~~l~v~GG~~~~------~~~~~v~~yd~~~~~W~~~~~~ 730 (748)
+. -..+|.+.-|+... +..++.|+|+..+++|..+..+
T Consensus 498 s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 498 ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhh
Confidence 12 24677777776422 2456889999999999765443
|
|
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-14 Score=125.34 Aligned_cols=102 Identities=40% Similarity=0.701 Sum_probs=92.4
Q ss_pred cchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCC
Q psy10286 274 VLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPS 353 (748)
Q Consensus 274 ~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~ 353 (748)
|++++.+|..+++.+|.++|.+||..||.++.++.+|.+|+.+.+..+++++++++.+|.++|+++++|++++...|.+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHhhccCCCCChHHHHhhh
Q psy10286 354 LPRLLAAVRLPLLSPHYLADRV 375 (748)
Q Consensus 354 ~~~l~~~vR~~~l~~~~l~~~~ 375 (748)
+..++++|||++|+++.|.+.+
T Consensus 81 ~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 81 LKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHhCCcccCCHHHHHHHH
Confidence 9999999999999999987643
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >KOG2437|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-13 Score=137.73 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=138.1
Q ss_pred CCCCcceeEEEEECC--EEEEEeCCCCCCCCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECC--EEEEEccCCCC
Q psy10286 542 MCFKRSAVGAAALND--KLYVCGGYDGVSSLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDS--YVYALGGHDGL 614 (748)
Q Consensus 542 ~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~--~iyv~GG~~~~ 614 (748)
-|..|.+|-++...+ .||+.||++|...+.+.|.|+...+.|+.+. ..|..|..|-++.... ++|+.|-+-+.
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 367899999999855 9999999999999999999999999998874 4788899999998755 99999976332
Q ss_pred ------cccCeEEEEECCCCcEEEcc------CCCCCCcceeEEEECCE--EEEEeccCCC---ccccEEEEEeCCCCcE
Q psy10286 615 ------SIFDSVERYDPKTDEWTSVK------PMLTKRCRLGVAALNNK--IYVCGGYDGA---IFLQSVEMYDPITDEW 677 (748)
Q Consensus 615 ------~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--i~v~GG~~~~---~~~~~v~~yd~~~~~W 677 (748)
....++|+||..++.|..+. .-|..-+.|+|++.+++ |||+||.... .....+|.||.+...|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 23578999999999999874 35677888999999887 9999997543 2456899999999999
Q ss_pred EEccC----------CCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEe
Q psy10286 678 KMIAS----------MNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYD 718 (748)
Q Consensus 678 ~~~~~----------~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd 718 (748)
..+.. ....|-+|++-.. +..+|++||-.....++-...||
T Consensus 417 ~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~ 469 (723)
T KOG2437|consen 417 KLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYD 469 (723)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcce
Confidence 87632 1234667765444 68899999965443333334443
|
|
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-12 Score=110.92 Aligned_cols=99 Identities=44% Similarity=0.788 Sum_probs=90.9
Q ss_pred cchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCC
Q psy10286 274 VLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPS 353 (748)
Q Consensus 274 ~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~ 353 (748)
|+.++.+|+.+++.+|.++|.+||.+||..+.++++|..|+.+.+..+++++++.+.+|..+|+++.+|++++...+. .
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~-~ 79 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR-H 79 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-H
Confidence 567888899999999999999999999999999999999999999999999999988899999999999999876555 7
Q ss_pred HHHHHhhccCCCCChHHHHh
Q psy10286 354 LPRLLAAVRLPLLSPHYLAD 373 (748)
Q Consensus 354 ~~~l~~~vR~~~l~~~~l~~ 373 (748)
+..+++++||++|++..+..
T Consensus 80 ~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 80 LPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHhCCCCCCCHHHHHh
Confidence 88999999999999987653
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >KOG0783|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-11 Score=132.70 Aligned_cols=133 Identities=20% Similarity=0.437 Sum_probs=105.6
Q ss_pred CCcccEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceee
Q psy10286 72 GKLCDVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREI 150 (748)
Q Consensus 72 ~~~~Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 150 (748)
++.-|+.|++ +|++++|||++|+||++||..||..-|.|+.+-.+..
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~-------------------------------- 755 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL-------------------------------- 755 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--------------------------------
Confidence 3444666666 7888999999999999999999999998887643333
Q ss_pred eecCCCHHHHHHHHHhhh-ceeEEe-----echhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHH
Q psy10286 151 TMQGIDAVAMEALINFVY-SGRVTI-----HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAME 224 (748)
Q Consensus 151 ~~~~~~~~~~~~~l~flY-tg~~~i-----~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~ 224 (748)
-.+..+.|..+|+|+| +.+..+ ..+-+-+++.+|+.|-+.+|++.|+.-|.+.+
T Consensus 756 --~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl------------------ 815 (1267)
T KOG0783|consen 756 --SPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKL------------------ 815 (1267)
T ss_pred --CcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh------------------
Confidence 4567999999999999 444432 22247889999999999999999999988864
Q ss_pred HHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcC
Q psy10286 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRF 269 (748)
Q Consensus 225 ~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l 269 (748)
+.+++..|++.|.+|...+|+..|.+|+..++
T Consensus 816 -------------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 816 -------------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred -------------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 45555777777888888888889999988543
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=87.77 Aligned_cols=49 Identities=31% Similarity=0.664 Sum_probs=46.1
Q ss_pred ccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEccCCCCCc
Q psy10286 498 LRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVSPMCFKR 546 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~r 546 (748)
||.+|++++++++|||+||..+ ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999987 678899999999999999999999987
|
|
| >PF13964 Kelch_6: Kelch motif | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=86.72 Aligned_cols=49 Identities=35% Similarity=0.647 Sum_probs=46.1
Q ss_pred CcceeEEEEECCEEEEEeCCCC-CCCCceEEEEeCCCCeEEEccCCCCCC
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDG-VSSLNTVECYEPDKDQWRIVKSMQKHR 593 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r 593 (748)
+|.+|++++++++|||+||..+ ...++++++||+.+++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999987 678999999999999999999999987
|
|
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.1e-10 Score=79.26 Aligned_cols=46 Identities=35% Similarity=0.761 Sum_probs=42.5
Q ss_pred ccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEccCCC
Q psy10286 498 LRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVSPMC 543 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~ 543 (748)
||.+|++++++++|||+||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999987 778899999999999999999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-09 Score=78.62 Aligned_cols=46 Identities=39% Similarity=0.803 Sum_probs=42.6
Q ss_pred CcceeEEEEECCEEEEEeCCCC-CCCCceEEEEeCCCCeEEEccCCC
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDG-VSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
||.+|++++++++||++||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999987 678999999999999999999886
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A .... |
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-09 Score=76.99 Aligned_cols=47 Identities=34% Similarity=0.596 Sum_probs=43.2
Q ss_pred CCEEEEEeCCC--CCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 696 MGKLWAIGGYD--GVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 696 ~~~l~v~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
|++||||||.+ .....+++|+||+.+++|+.++++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999998 566789999999999999999999999999999875
|
|
| >PF13415 Kelch_3: Galactose oxidase, central domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.4e-09 Score=75.03 Aligned_cols=47 Identities=36% Similarity=0.663 Sum_probs=43.1
Q ss_pred CCEEEEEccCC--CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 508 KNRLYAFGGYN--GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 508 ~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
+++|||+||.+ +....+++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 567789999999999999999999999999999863
|
|
| >KOG2838|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.8e-09 Score=97.05 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=84.6
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQ 135 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (748)
....++++++...++...+.|+-|.+....|+|||++|++|||+|+.+......-. ..+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~--ae~------------------- 170 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPE--AED------------------- 170 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcc--hhh-------------------
Confidence 34577889999999999999999999999999999999999999998886532111 000
Q ss_pred cccccccccccceeeeecCCCHHHHHHHHHhhhceeEEee---chhHHHHHHHHHHhcchhHHHH
Q psy10286 136 AMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIH---SQNVQSLMVVASFLQMQKVADA 197 (748)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~---~~~v~~ll~~A~~l~i~~l~~~ 197 (748)
.-.|..-+++.++|+++|+|+|||+.-.. -.|+.-|-+++.-|+...-.+.
T Consensus 171 -----------i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~kkLd~ 224 (401)
T KOG2838|consen 171 -----------ICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFKKLDE 224 (401)
T ss_pred -----------hhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCchhhhH
Confidence 01233367899999999999999997544 3468888888888887654443
|
|
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=72.65 Aligned_cols=46 Identities=35% Similarity=0.665 Sum_probs=41.6
Q ss_pred ccceeEEEEECCEEEEEccC---CCCCCCCeEEEEECCCCeEEEccCCC
Q psy10286 498 LRSRVGVAVMKNRLYAFGGY---NGSERLSTVEEFDPVRRVWNKVSPMC 543 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~~ 543 (748)
||.+|++++++++|||+||. ......+++++||+.+++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 45567889999999999999998875
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-08 Score=72.47 Aligned_cols=46 Identities=37% Similarity=0.657 Sum_probs=41.6
Q ss_pred CcceeEEEEECCEEEEEeCC---CCCCCCceEEEEeCCCCeEEEccCCC
Q psy10286 545 KRSAVGAAALNDKLYVCGGY---DGVSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
+|++|++++++++||++||. ......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 35567899999999999999998875
|
This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.2e-07 Score=88.04 Aligned_cols=160 Identities=16% Similarity=0.278 Sum_probs=110.7
Q ss_pred eEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCC----CcEEEcc-CCCCCCcceeEE
Q psy10286 572 TVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT----DEWTSVK-PMLTKRCRLGVA 646 (748)
Q Consensus 572 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~-~~p~~r~~~~~~ 646 (748)
....||+.+++++.+......-+...+..-+|++.+.||..+. ...+-.|+|.+ ..|.+.. .|..+|...++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 3467999999999886544444444455558999999998542 34677788865 6798876 588999999998
Q ss_pred EE-CCEEEEEeccCCCccccEEEEEeCCC-----CcEEEccC----CCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEE
Q psy10286 647 AL-NNKIYVCGGYDGAIFLQSVEMYDPIT-----DEWKMIAS----MNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEV 716 (748)
Q Consensus 647 ~~-~~~i~v~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~----~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~ 716 (748)
.+ +|+++|+||... ...+.+.... ..|..+.. .+...+-+..+.-+|+||+++.. ...+
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 88 889999999762 2233333322 12222222 22223334555569999999873 4689
Q ss_pred EeCCCCce-EecCCCCC-CCcc---eEEEEeec
Q psy10286 717 YDPSTDSW-AFVAPMCA-HEGG---VGVGVIPI 744 (748)
Q Consensus 717 yd~~~~~W-~~~~~~~~-~r~~---~~~~~~~~ 744 (748)
||+.++++ +.+|++|. .|.+ -+.++|++
T Consensus 194 ~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred EeCCCCeEEeeCCCCCCCceecCCCcceEEecC
Confidence 99999987 88999998 4544 35777777
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-08 Score=73.04 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=31.4
Q ss_pred ccceeEEEEE-CCEEEEEccCCCC-CCCCeEEEEECCCCeEEEccCCCC
Q psy10286 498 LRSRVGVAVM-KNRLYAFGGYNGS-ERLSTVEEFDPVRRVWNKVSPMCF 544 (748)
Q Consensus 498 ~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~ 544 (748)
||.+|+++.+ +++|||+||.+.. ...+++|+||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999999 5899999999865 688999999999999999988873
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=71.73 Aligned_cols=47 Identities=36% Similarity=0.769 Sum_probs=42.6
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
+||++||..+....+++++||+.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766678899999999999999999999999999998765
|
|
| >PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-08 Score=72.69 Aligned_cols=47 Identities=30% Similarity=0.514 Sum_probs=31.5
Q ss_pred CCcceeEEEE-CCEEEEEeccCCC-ccccEEEEEeCCCCcEEEccCCCC
Q psy10286 639 KRCRLGVAAL-NNKIYVCGGYDGA-IFLQSVEMYDPITDEWKMIASMNV 685 (748)
Q Consensus 639 ~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~ 685 (748)
+|.+|+++.+ +++|||+||.+.. ..++++|+||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999999 5899999999876 589999999999999999988773
|
|
| >smart00612 Kelch Kelch domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-08 Score=70.69 Aligned_cols=47 Identities=40% Similarity=0.838 Sum_probs=42.7
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS 603 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 603 (748)
+||++||..+...++++++||+.+++|+.+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998776678999999999999999999999999999988764
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.5e-05 Score=76.72 Aligned_cols=194 Identities=10% Similarity=0.114 Sum_probs=118.4
Q ss_pred CeEEEEECCCCeEEEccCCCCCccee----EEEEECC-----EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC-C
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAV----GAAALND-----KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-R 593 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~----~~~~~~~-----~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r 593 (748)
..+.++||.|++|..+|+.+.++... ....++. |+..++...+......+++|+..++.|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 46889999999999998655421111 1111221 555554432222345789999999999998743322 1
Q ss_pred cceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-ccCCCCCCc----ceeEEEECCEEEEEeccCCCccccEEE
Q psy10286 594 SAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-VKPMLTKRC----RLGVAALNNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 594 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~v~ 668 (748)
.....+.++|.+|-++..........+..||..+.+|.. ++ +|..+. ....+.++|++.++....... .-+||
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IW 171 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLW 171 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC-cEEEE
Confidence 122367789999988754321111269999999999995 53 343332 345677789988877543211 24788
Q ss_pred EEe-CCCCcEEEccCCC---CCCc----ceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 669 MYD-PITDEWKMIASMN---VMRS----RVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 669 ~yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+.+ .....|++.-.++ .+.. ....+..+++|++..+.. ...-+..||+++|
T Consensus 172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 875 4456798763332 1111 123455688988877531 1123899999875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-07 Score=92.62 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCCcceeEEEECCEEEEEeccCCCc-cccEEEEEeCCCCcEEEc---cCCCCCCcceEEEEE-CCEEEEEeCCCCCCCC
Q psy10286 637 LTKRCRLGVAALNNKIYVCGGYDGAI-FLQSVEMYDPITDEWKMI---ASMNVMRSRVALVAN-MGKLWAIGGYDGVSNL 711 (748)
Q Consensus 637 p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~ 711 (748)
..++..++++.+++++||+||.+... ..+.+++||..+++|..- +..|.+|.+|+++++ +++|+|+++....+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 34788899999999999999987764 678999999999999874 788999999999998 69999998755432
Q ss_pred CeEEEEeCCC
Q psy10286 712 PTVEVYDPST 721 (748)
Q Consensus 712 ~~v~~yd~~~ 721 (748)
.++|.+...|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 5788877665
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.4e-07 Score=91.90 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCcceEEEEECCEEEEEccCCCCc-ccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEE-CCEEEEEeccCCCcccc
Q psy10286 591 KHRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQ 665 (748)
Q Consensus 591 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~ 665 (748)
.++..++++.+++++|++||.++.+ ..+.+++||+.+.+|.... ..|.+|.+|+++++ +++|+|+++.... -+
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~~ 100 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--DD 100 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--cc
Confidence 4788899999999999999987765 6789999999999998764 77899999999999 6899999975443 37
Q ss_pred EEEEEeCCCC
Q psy10286 666 SVEMYDPITD 675 (748)
Q Consensus 666 ~v~~yd~~~~ 675 (748)
++|.+...|.
T Consensus 101 ~~w~l~~~t~ 110 (398)
T PLN02772 101 SIWFLEVDTP 110 (398)
T ss_pred ceEEEEcCCH
Confidence 7888876653
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.5e-06 Score=82.28 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=100.4
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC----CeEEEcc-CCCCCcceeEEE
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR----RVWNKVS-PMCFKRSAVGAA 552 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~~~-~~~~~r~~~~~~ 552 (748)
.-..||+.+++++.+......-+..++..-+|++.+.||..+ ..+.+..|+|.+ ..|.+.+ .|..+|-+.++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 456799999999988654433333334444899999999764 335677888876 6798875 489999999988
Q ss_pred EE-CCEEEEEeCCCCCCCCceEEEEeCCC-----CeEEEccC----CCCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 553 AL-NDKLYVCGGYDGVSSLNTVECYEPDK-----DQWRIVKS----MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~-----~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.+ ||+++|+||... ...+.+.+.. ..|..+.. .+...+-+....-+|+||+++.. ....
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 88 899999999762 2233333321 12322322 12222333444459999999985 5678
Q ss_pred EECCCCcE-EEccCCCC
Q psy10286 623 YDPKTDEW-TSVKPMLT 638 (748)
Q Consensus 623 yd~~~~~W-~~~~~~p~ 638 (748)
||+.++++ ..++.+|.
T Consensus 194 ~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPG 210 (243)
T ss_pred EeCCCCeEEeeCCCCCC
Confidence 89999987 67887774
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG2838|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-07 Score=89.84 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCcccEEEE-E-CC--------------eEEeeeeeeeeccCHHHHHhhccccccccccee-eeecchh
Q psy10286 61 GFPVMEEIRRQGKLCDVTIK-V-DD--------------QSFTCHRIVLAATIPYFQAMFTSDMAESKQREI-TMQGIDA 123 (748)
Q Consensus 61 ~~~~l~~l~~~~~~~Dv~i~-~-~~--------------~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~-~~~~~~~ 123 (748)
|-++++.++++...-|+.|. + +| .+++|||+|.++||++||.++.+..++.....- ++..
T Consensus 222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~--- 298 (401)
T KOG2838|consen 222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRR--- 298 (401)
T ss_pred hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccC---
Confidence 34456777777755555543 3 22 479999999999999999999886665432211 1111
Q ss_pred eehhhccccccccccccccccccceeeeecCCCHHHH-HHHHHhhhceeEEe----------------------------
Q psy10286 124 VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAM-EALINFVYSGRVTI---------------------------- 174 (748)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~flYtg~~~i---------------------------- 174 (748)
+...|-..-|=|.+| ..+|+++||+.+++
T Consensus 299 ----------------------PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~ 356 (401)
T KOG2838|consen 299 ----------------------PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDL 356 (401)
T ss_pred ----------------------CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchh
Confidence 111111123444444 67899999998872
Q ss_pred echhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccc
Q psy10286 175 HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLD 213 (748)
Q Consensus 175 ~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~ 213 (748)
..+..++|+.+|-+|++..|.++|++.+...+..++..+
T Consensus 357 qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 357 QAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNG 395 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 223478899999999999999999999988776665444
|
|
| >TIGR01640 F_box_assoc_1 F-box protein interaction domain | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00011 Score=73.26 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=110.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccc---e--eEEEEE---CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC-c
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRS---R--VGVAVM---KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK-R 546 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~---~--~~~~~~---~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-r 546 (748)
..+..+||.|++|..+++.+.++. . .+.... +. +|..++...+......+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 356667777777777765433211 0 111110 11 333333221112335789999999999998643321 1
Q ss_pred ceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC----cceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 547 SAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR----SAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 547 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.....+.++|.+|-+...........+..||..+++|+..-++|..+ .....+.++|++.++....... .-++|.
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWv 172 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLWV 172 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-cEEEEE
Confidence 12226678999998875332222237899999999999522344333 2346677899999887643211 246888
Q ss_pred EE-CCCCcEEEccCCC---CCCc----ceeEEEECCEEEEEeccCCCccccEEEEEeCCCC
Q psy10286 623 YD-PKTDEWTSVKPML---TKRC----RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 623 yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
.+ -....|++.-..+ .++. ....+..+++|++..+.. ...-+..||++++
T Consensus 173 l~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 173 LNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred ECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 75 4456798753222 1111 123445578888877531 1123888998875
|
This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. |
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-06 Score=59.96 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCCcceeEEEEECCEEEEEeCCCC--CCCCceEEEEeCCCC
Q psy10286 542 MCFKRSAVGAAALNDKLYVCGGYDG--VSSLNTVECYEPDKD 581 (748)
Q Consensus 542 ~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~ 581 (748)
+|.+|.+|++++++++||++||.++ ...++++|+||..+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 567899999998763
|
|
| >PF13854 Kelch_5: Kelch motif | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.8e-06 Score=59.72 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=35.3
Q ss_pred CCCCCcceEEEEECCEEEEEeCCCC--CCCCCeEEEEeCCCC
Q psy10286 683 MNVMRSRVALVANMGKLWAIGGYDG--VSNLPTVEVYDPSTD 722 (748)
Q Consensus 683 ~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~~v~~yd~~~~ 722 (748)
+|.+|.+|+++.++++|||+||.+. +...+++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 557789999998764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0068 Score=65.75 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=147.2
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCC--ceeecccc-----------cccceEEecccccccCCCccceEEEEeCCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVG--RWQMAEEE-----------TLSNAVISTKSCLTKAGDSLSTVEVFDPLV 486 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~--~W~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~ 486 (748)
.+++||+.+.. ..+.++|..++ .|..-... ......+..++.++.. .....++.+|..+
T Consensus 68 ~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~-~~~g~l~ald~~t 139 (394)
T PRK11138 68 AYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIG-SEKGQVYALNAED 139 (394)
T ss_pred ECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEE-cCCCEEEEEECCC
Confidence 57788887542 25788887644 47643221 1111122233333332 2234689999987
Q ss_pred Cc--eEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCC--CcceeEEEEECCEEEE
Q psy10286 487 GR--WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCF--KRSAVGAAALNDKLYV 560 (748)
Q Consensus 487 ~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv 560 (748)
++ |+.-.+- . ...+-++.++.+|+..+ ...++.+|+.+.+ |+.-...|. .+...+-++.++.+|+
T Consensus 140 G~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~ 210 (394)
T PRK11138 140 GEVAWQTKVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIV 210 (394)
T ss_pred CCCcccccCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEE
Confidence 74 8654221 1 11223455888887543 2368999998775 876543221 1222233445777776
Q ss_pred EeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc-
Q psy10286 561 CGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE- 629 (748)
Q Consensus 561 ~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 629 (748)
.++ + ..+..+|+.+.+ |+.....|.. ....+-++.++.+|+.+.. ..++++|+.+.+
T Consensus 211 ~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~ald~~tG~~ 278 (394)
T PRK11138 211 GGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVALDLRSGQI 278 (394)
T ss_pred EcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEEECCCCCE
Confidence 443 2 357788887764 8653222211 1123445678999986532 369999998764
Q ss_pred -EEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeCCC
Q psy10286 630 -WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGGYD 706 (748)
Q Consensus 630 -W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 706 (748)
|+.-- ... ...+..+++||+... ...++.+|+++.+ |+.-. ...+...+.++.+++||+... +
T Consensus 279 ~W~~~~--~~~---~~~~~~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l~v~~~-~ 344 (394)
T PRK11138 279 VWKREY--GSV---NDFAVDGGRIYLVDQ------NDRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYLVVGDS-E 344 (394)
T ss_pred EEeecC--CCc---cCcEEECCEEEEEcC------CCeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEEEEEeC-C
Confidence 87531 111 234567899998764 2478999988764 86421 112333445567899987532 1
Q ss_pred CCCCCCeEEEEeCCCCc
Q psy10286 707 GVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~ 723 (748)
..++++|+.+++
T Consensus 345 -----G~l~~ld~~tG~ 356 (394)
T PRK11138 345 -----GYLHWINREDGR 356 (394)
T ss_pred -----CEEEEEECCCCC
Confidence 258889988875
|
|
| >KOG4350|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=7.4e-06 Score=82.07 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHH
Q psy10286 177 QNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK 256 (748)
Q Consensus 177 ~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~ 256 (748)
+.+.+.|.+|+.|++.+|..+..+||++-|..+|.+-++..|..+.+.+|.+|+.- +...|+.+|+....|..|.+
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~m----fmDrnA~~lL~~~sFn~LSk 191 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMM----FMDRNADQLLEDPSFNRLSK 191 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHH----HHhcCHHhhhcCcchhhhhH
Confidence 44556788999999999999999999999999999999888888888888888753 67788888887777766532
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHhhcCc-hHHHHHHHHHHHH----hhhhhccCcccccCCHHhHhcccccCCcCCCC
Q psy10286 257 VADACADFLKKRFHPNNVLGIRQFADTLNC-LQLSEAADKYVQQ----YFHEVSMSDEFIGLGVNEVNDIVKRSELHLMS 331 (748)
Q Consensus 257 l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~-~~l~~~~~~~i~~----~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~ 331 (748)
+.+.+++.-...... .+++.++..|-+. ++..+++-++++.++..+|...+....|. +
T Consensus 192 ---------------~sL~e~l~RDsFfApE~~IFlAv~~W~~~Nske~~k~~~~~VRLPLm~lteLLnvVRPsGll--s 254 (620)
T KOG4350|consen 192 ---------------DSLKELLARDSFFAPELKIFLAVRSWHQNNSKEASKVLLELVRLPLMTLTELLNVVRPSGLL--S 254 (620)
T ss_pred ---------------HHHHHHHhhhcccchHHHHHHHHHHHHhcCchhhHHHHHHHHhhhhccHHHHHhccCcccCc--C
Confidence 111122221222222 3788999999874 47778889999999999999999988875 7
Q ss_pred hHHHHHHHH
Q psy10286 332 EEQVFEAVM 340 (748)
Q Consensus 332 E~~v~~~v~ 340 (748)
.+.+++|+.
T Consensus 255 pD~iLDAI~ 263 (620)
T KOG4350|consen 255 PDTILDAIE 263 (620)
T ss_pred HHHHHHHHH
Confidence 788888875
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.015 Score=62.70 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=144.3
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCc--eeecccccccceEEecccccccCCCccceEEEEeCCCCc--eEEccCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGR--WQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEAM 495 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~~ 495 (748)
.++.+|+.+.. ..+.+||+.+++ |...-......+.+..++.++..+ ....++.+|..+++ |+.-..-
T Consensus 64 ~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 64 AGGKVYAADAD-------GTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGT-EKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred ECCEEEEECCC-------CeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEc-CCCEEEEEECCCCcEeeeeccCc
Confidence 46667765432 358999987665 765433333333333344444332 23578999988765 8654221
Q ss_pred CcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCC--CcceeEEEEECCEEEEEeCCCCCCCCc
Q psy10286 496 SMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCF--KRSAVGAAALNDKLYVCGGYDGVSSLN 571 (748)
Q Consensus 496 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~ 571 (748)
. ...+.++.++.+|+..+ ...++.+|+.+.+ |+.....+. .+...+.+..++.+|+ |..+ .
T Consensus 136 --~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g 200 (377)
T TIGR03300 136 --E-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----G 200 (377)
T ss_pred --e-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----C
Confidence 1 11223445778877543 2468999998764 875433221 1222334555776654 4322 3
Q ss_pred eEEEEeCCCC--eEEEccCCCCCC--------cceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCC
Q psy10286 572 TVECYEPDKD--QWRIVKSMQKHR--------SAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTK 639 (748)
Q Consensus 572 ~~~~yd~~~~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~ 639 (748)
.+..+|+.++ .|+.-...+... ...+.++.++.+|+.+.. ..+++||+++.+ |+.-.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~----- 269 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA----- 269 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEeecc-----
Confidence 6888998776 486542222111 123344568888886532 369999988764 76531
Q ss_pred CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCC--cEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEE
Q psy10286 640 RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD--EWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~y 717 (748)
....+.+..++++|+... ...++++|..+. .|+.-. +. .+...+.+..++.||+.. .+ ..++++
T Consensus 270 ~~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i~g~~l~~~~-~~-----G~l~~~ 335 (377)
T TIGR03300 270 SSYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAVVGGYLVVGD-FE-----GYLHWL 335 (377)
T ss_pred CCccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc-cc-CCccccCEEECCEEEEEe-CC-----CEEEEE
Confidence 112334556889988753 247899998776 476521 11 122233345678887753 22 258889
Q ss_pred eCCCCc
Q psy10286 718 DPSTDS 723 (748)
Q Consensus 718 d~~~~~ 723 (748)
|+.+++
T Consensus 336 d~~tG~ 341 (377)
T TIGR03300 336 SREDGS 341 (377)
T ss_pred ECCCCC
Confidence 987764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0011 Score=64.14 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=107.4
Q ss_pred EEEEEccCCCCCC-CCeEEEEECC--C-Ce-----E---EEccCCCCCcceeEEEEE--CC--EEEEEeCCC----CC--
Q psy10286 510 RLYAFGGYNGSER-LSTVEEFDPV--R-RV-----W---NKVSPMCFKRSAVGAAAL--ND--KLYVCGGYD----GV-- 567 (748)
Q Consensus 510 ~iyv~GG~~~~~~-~~~v~~yd~~--t-~~-----W---~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~----~~-- 567 (748)
.-++.||++.++. .+.++..... . |+ . ..+..+|.+|++|++.++ .| -..+|||.. +.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 3456688875544 3455554433 2 22 1 234789999999999887 23 477889964 11
Q ss_pred --------CCCceEEEEeCCCCeEEE--ccCCCCCCcceEEEEECCEEEEEccCC--CCcccCeEEEEECCCC---cEEE
Q psy10286 568 --------SSLNTVECYEPDKDQWRI--VKSMQKHRSAGGVIAFDSYVYALGGHD--GLSIFDSVERYDPKTD---EWTS 632 (748)
Q Consensus 568 --------~~~~~~~~yd~~~~~W~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~---~W~~ 632 (748)
.....|+..|++-+-.+. ++.+......|.+..-++.+|++||.. .+.+...+++...+-- -+-.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vs 199 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVS 199 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeE
Confidence 123556777877776543 456667788899999999999999973 3334455665543211 1111
Q ss_pred ccCCCCCCcceeEEEE---CCEEEEEeccCCCc--c---------ccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCE
Q psy10286 633 VKPMLTKRCRLGVAAL---NNKIYVCGGYDGAI--F---------LQSVEMYDPITDEWKMIASMNVMRSRVALVANMGK 698 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~--~---------~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 698 (748)
..-++...+-.++.+. .+..+|+||+.... . -+.|.+-..+.-.|+. .....|.+++...-+|.
T Consensus 200 C~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~--dI~hSrtWFGgs~G~G~ 277 (337)
T PF03089_consen 200 CTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG--DIKHSRTWFGGSMGKGS 277 (337)
T ss_pred EEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC--CcCcCccccccccCCce
Confidence 1122333333333322 35688899985432 1 1123333334445542 34455667666555555
Q ss_pred EEE
Q psy10286 699 LWA 701 (748)
Q Consensus 699 l~v 701 (748)
+++
T Consensus 278 ~Li 280 (337)
T PF03089_consen 278 ALI 280 (337)
T ss_pred EEE
Confidence 444
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >KOG0511|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=5e-06 Score=82.58 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=101.2
Q ss_pred eEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCCCHHHHHHH
Q psy10286 84 QSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEAL 163 (748)
Q Consensus 84 ~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 163 (748)
.++|||+++++ |+.||+.||.+++.|++.+... ....++.....+++..
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~------------------------------p~lslp~~~~~vveI~ 349 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTR------------------------------PGLSLPSLADVVVEID 349 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccc------------------------------cccccchHHHHHHHHH
Confidence 46999999995 7899999999999986532211 1233377888999999
Q ss_pred HHhhhceeEEeechhHHHHHHHHHHhcchhHH---HHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecc
Q psy10286 164 INFVYSGRVTIHSQNVQSLMVVASFLQMQKVA---DACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQ 240 (748)
Q Consensus 164 l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~---~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~ 240 (748)
++|+|+.+.+|..+-+.+++-.|+++.+..-. .+...-+.++
T Consensus 350 lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq~----------------------------------- 394 (516)
T KOG0511|consen 350 LRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQW----------------------------------- 394 (516)
T ss_pred HHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHH-----------------------------------
Confidence 99999999999999888888888887665311 1111111110
Q ss_pred cHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHh
Q psy10286 241 NVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNE 317 (748)
Q Consensus 241 ~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~ 317 (748)
.++ ++.=++.+++..+...+...|.+.+..++..|+..++..+++...-...
T Consensus 395 ---------------------~e~----id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s 446 (516)
T KOG0511|consen 395 ---------------------LEL----IDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS 446 (516)
T ss_pred ---------------------HHH----HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence 011 1222456677777777888899999999999999999988886643333
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0054 Score=66.54 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=138.5
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCC--ceeeccccc-ccceEEecccccccCCCccceEEEEeCCCCc--eEEccC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVG--RWQMAEEET-LSNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEA 494 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~--~W~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~ 494 (748)
.+++||+.+. + ..+.++|..++ .|....... ....++.. +.++.. .....++.+|+.+++ |+.-..
T Consensus 119 ~~~~v~v~~~-~------g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~-~~v~v~-~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSE-K------GQVYALNAEDGEVAWQTKVAGEALSRPVVSD-GLVLVH-TSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcC-C------CEEEEEECCCCCCcccccCCCceecCCEEEC-CEEEEE-CCCCEEEEEEccCCCEeeeecCC
Confidence 4667776432 1 35889998765 686643322 22223332 222222 223468999999886 876543
Q ss_pred CCc--ccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC-----c---ceeEEEEECCEEEEEe
Q psy10286 495 MSM--LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK-----R---SAVGAAALNDKLYVCG 562 (748)
Q Consensus 495 ~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~-----r---~~~~~~~~~~~iyv~G 562 (748)
.+. .+...+-++.++.+|+.++. ..+..+|+.+.+ |+.-...|.. | ...+-++.++.+|+.+
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 221 12223334557777775431 357888888764 8643221211 0 1123445689999865
Q ss_pred CCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--cEEEccCCCC
Q psy10286 563 GYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWTSVKPMLT 638 (748)
Q Consensus 563 G~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~ 638 (748)
. + ..++++|+.+++ |+.-- ..+ ...+..++.||+.... ..++++|+.+. .|+.-. ..
T Consensus 264 ~-~-----g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~ 324 (394)
T PRK11138 264 Y-N-----GNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LL 324 (394)
T ss_pred c-C-----CeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cC
Confidence 3 2 368899998765 87632 111 1346678999997642 46999999876 476421 12
Q ss_pred CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEe
Q psy10286 639 KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIG 703 (748)
Q Consensus 639 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~G 703 (748)
.+...+.++.+++||+... + ..++++|+.+.+ |+. .++......+.+..+++|||-.
T Consensus 325 ~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 325 HRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred CCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEEe
Confidence 2334455667899887543 2 368889988875 543 1122223344566788888874
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.019 Score=57.26 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=120.7
Q ss_pred EEEEeCCCCc--eEEccCCCcccceeE--EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEE
Q psy10286 479 VEVFDPLVGR--WQMAEAMSMLRSRVG--VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 479 ~~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~ 552 (748)
+..+|+.+++ |+.- +.....+.. .+..++.+|+..+ ...++++|+.+++ |+.-. +.+-... ..
T Consensus 5 l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~ 73 (238)
T PF13360_consen 5 LSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA-PV 73 (238)
T ss_dssp EEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-EE
T ss_pred EEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-ee
Confidence 4556665553 5441 111122223 3446889998743 3579999998876 66543 2222222 46
Q ss_pred EECCEEEEEeCCCCCCCCceEEEEeCCCCe--EE-EccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 553 ALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WR-IVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 553 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~-~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
..++.+|+..+. +.++.+|..+.+ |+ .....+.. +.....++.++.+|+... ...+..+|+.+
T Consensus 74 ~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~t 141 (238)
T PF13360_consen 74 VDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKT 141 (238)
T ss_dssp EETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTT
T ss_pred ecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEecCC
Confidence 778999887631 379999977764 98 45443332 233445555778877664 24799999987
Q ss_pred Cc--EEEccCCCCCCc--------ceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEE
Q psy10286 628 DE--WTSVKPMLTKRC--------RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVAN 695 (748)
Q Consensus 628 ~~--W~~~~~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~ 695 (748)
++ |+.-...+.... ....+..++.+|+.++.. .+..+|..+.+ |+.. ... ........
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~--~~~~~~~~ 211 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG--IYSLPSVD 211 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS---ECECEECC
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC--ccCCceee
Confidence 74 776443332111 133333468888887643 25666999987 8432 211 11224455
Q ss_pred CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 696 MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 696 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
++.||+.. . ...++++|+++++
T Consensus 212 ~~~l~~~~-~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 212 GGTLYVTS-S-----DGRLYALDLKTGK 233 (238)
T ss_dssp CTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred CCEEEEEe-C-----CCEEEEEECCCCC
Confidence 78888776 2 2479999999974
|
... |
| >PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0006 Score=65.94 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=108.5
Q ss_pred EEEEeCCCCCC-CCceEEEEeCCCCe--------E---EEccCCCCCCcceEEEEE----CCEEEEEccCCCC-------
Q psy10286 558 LYVCGGYDGVS-SLNTVECYEPDKDQ--------W---RIVKSMQKHRSAGGVIAF----DSYVYALGGHDGL------- 614 (748)
Q Consensus 558 iyv~GG~~~~~-~~~~~~~yd~~~~~--------W---~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~------- 614 (748)
-.+.||...+. -..+++.....+.. . ..+.+.|.+|++|++.++ .....+|||..-.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 34558877433 44566665544332 1 234689999999998776 2357889996311
Q ss_pred -------cccCeEEEEECCCCcEEE--ccCCCCCCcceeEEEECCEEEEEeccCCCc--cccEEEEEeCC---CCcEEEc
Q psy10286 615 -------SIFDSVERYDPKTDEWTS--VKPMLTKRCRLGVAALNNKIYVCGGYDGAI--FLQSVEMYDPI---TDEWKMI 680 (748)
Q Consensus 615 -------~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~--~~~~v~~yd~~---~~~W~~~ 680 (748)
.....|+..|++-+-.+. ++.+..+-+.|.+..-++.+|++||+.-.. .-..+++...+ ..-+...
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 124467788887776653 456667788898888999999999975332 22334433211 1112222
Q ss_pred cCCCCCCcceEEEE--E-CCEEEEEeCCCCCC-----------CCCeEEEEeCCCCceEecCCCCCCCcce------EEE
Q psy10286 681 ASMNVMRSRVALVA--N-MGKLWAIGGYDGVS-----------NLPTVEVYDPSTDSWAFVAPMCAHEGGV------GVG 740 (748)
Q Consensus 681 ~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~-----------~~~~v~~yd~~~~~W~~~~~~~~~r~~~------~~~ 740 (748)
..++...+-.++.+ . .+..+|+||+..+. ..+.|.+-..++-.|+. ++.++|.++ |.+
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~--dI~hSrtWFGgs~G~G~~ 278 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG--DIKHSRTWFGGSMGKGSA 278 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC--CcCcCccccccccCCceE
Confidence 23333443333322 2 46788899986432 12345555556667763 455555554 566
Q ss_pred EeecC
Q psy10286 741 VIPIC 745 (748)
Q Consensus 741 ~~~~~ 745 (748)
++-+|
T Consensus 279 Li~iP 283 (337)
T PF03089_consen 279 LIGIP 283 (337)
T ss_pred EEEEC
Confidence 66555
|
V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.02 Score=61.67 Aligned_cols=231 Identities=13% Similarity=0.190 Sum_probs=127.1
Q ss_pred ceEeecCCCCc--eeecccccc-cceEEecccccccCCCccceEEEEeCCCCc--eEEccCCCc--ccceeEEEEECCEE
Q psy10286 439 TVEVFDPLVGR--WQMAEEETL-SNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEAMSM--LRSRVGVAVMKNRL 511 (748)
Q Consensus 439 ~~~~y~~~~~~--W~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~~~i 511 (748)
.++++|+.+++ |........ ...++. ++.++.. .....++.+|+.+++ |+.-...+. .+...+.++.++.+
T Consensus 116 ~l~ald~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v 193 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSSEVLSPPLVA-NGLVVVR-TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGV 193 (377)
T ss_pred EEEEEECCCCcEeeeeccCceeecCCEEE-CCEEEEE-CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEE
Confidence 68899987654 765433222 222222 2222222 223468999998774 765433221 12223345557766
Q ss_pred EEEccCCCCCCCCeEEEEECCCC--eEEEccCCCCCc--------ceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 512 YAFGGYNGSERLSTVEEFDPVRR--VWNKVSPMCFKR--------SAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 512 yv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
|+ |..+ ..+..+|+.++ .|+.-...+... ...+.+..++.+|+.+.. ..+++||+.++
T Consensus 194 ~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG 261 (377)
T TIGR03300 194 LV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSG 261 (377)
T ss_pred EE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCC
Confidence 54 4321 36889998876 486532222111 112334458888886532 36889998776
Q ss_pred e--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--cEEEccCCCCCCcceeEEEECCEEEEEec
Q psy10286 582 Q--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWTSVKPMLTKRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 582 ~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 657 (748)
+ |+.-. + ...+.+..++.+|+.... ..++++|..+. .|+.-. + ..+...+.+..++.||+..
T Consensus 262 ~~~W~~~~--~---~~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~~-~-~~~~~ssp~i~g~~l~~~~- 327 (377)
T TIGR03300 262 RVLWKRDA--S---SYQGPAVDDNRLYVTDAD------GVVVALDRRSGSELWKNDE-L-KYRQLTAPAVVGGYLVVGD- 327 (377)
T ss_pred cEEEeecc--C---CccCceEeCCEEEEECCC------CeEEEEECCCCcEEEcccc-c-cCCccccCEEECCEEEEEe-
Confidence 4 76541 1 123445678999987532 46999998776 476521 1 1122333455678777653
Q ss_pred cCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeC
Q psy10286 658 YDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
.+ ..++++|+.+.+ |+. .++......+.+..+++||+.+.
T Consensus 328 ~~-----G~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 328 FE-----GYLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred CC-----CEEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEEEEeC
Confidence 22 368889987664 432 11222234455677888886653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2716|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00023 Score=68.16 Aligned_cols=94 Identities=17% Similarity=0.359 Sum_probs=77.8
Q ss_pred EEEEECCeEEeeeeeeeeccCHHHHHhhccccccc--ccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 77 VTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAES--KQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
|.+.|||..|..+|.-|.-...+|++|+..++.-. .+..|. -+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IF-----------------------------------ID 51 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIF-----------------------------------ID 51 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEE-----------------------------------ec
Confidence 56889999999999999999999999998875321 112232 36
Q ss_pred CCHHHHHHHHHhhhceeEEeech--hHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ--NVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~--~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
=+|.-|..+|+||-.|.+.+++. .+.+|++=|.+|.+++|++.|..-+...
T Consensus 52 RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 52 RSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred CChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 68899999999999888876655 6889999999999999999999987764
|
|
| >PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00014 Score=60.79 Aligned_cols=89 Identities=18% Similarity=0.386 Sum_probs=63.7
Q ss_pred EEEEECCeEEeeeeeeee-ccCHHHHHhhccc-ccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 77 VTIKVDDQSFTCHRIVLA-ATIPYFQAMFTSD-MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~-a~S~~F~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
|+|.|+|+.|..-+..|. ....+|.+|+.+. .... ......+-| +
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~--------------------------------~~~~~~~fi-D 47 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDY--------------------------------DDDDGEYFI-D 47 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGE--------------------------------ETTTTEEEE-S
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhcccccc--------------------------------CCccceEEe-c
Confidence 689999999999999997 5567899999864 1110 111222222 5
Q ss_pred CCHHHHHHHHHhhhc-eeEEee-chhHHHHHHHHHHhcchhH-HHHH
Q psy10286 155 IDAVAMEALINFVYS-GRVTIH-SQNVQSLMVVASFLQMQKV-ADAC 198 (748)
Q Consensus 155 ~~~~~~~~~l~flYt-g~~~i~-~~~v~~ll~~A~~l~i~~l-~~~c 198 (748)
=+|..|+.+|+|+.+ +.+..+ ...+..+++-|++|+++.+ ++.|
T Consensus 48 Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 48 RDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp S-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred cChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 699999999999999 777765 5579999999999999999 7766
|
They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C .... |
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00024 Score=70.96 Aligned_cols=89 Identities=24% Similarity=0.503 Sum_probs=73.0
Q ss_pred eEEeeeeeeeeccCHHHHHhhcccccc-cccceeeeecchheehhhccccccccccccccccccceeeeecCCCHHHHHH
Q psy10286 84 QSFTCHRIVLAATIPYFQAMFTSDMAE-SKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEA 162 (748)
Q Consensus 84 ~~~~aHk~iL~a~S~~F~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (748)
+.|.|.+-+|-.--.||+..+.....+ ...+.+.+. -.-+..+|+-
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis---------------------------------VhCDv~iF~W 60 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS---------------------------------VHCDVHIFEW 60 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE---------------------------------EecChhHHHH
Confidence 579999999999999999999652211 111222220 2578899999
Q ss_pred HHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 163 LINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 163 ~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
+++|+......++.+||..++.-|++|||+.|++.|..|+..+
T Consensus 61 Lm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 61 LMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred HHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHh
Confidence 9999999989999999999999999999999999999999775
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.24 Score=49.30 Aligned_cols=174 Identities=20% Similarity=0.269 Sum_probs=105.2
Q ss_pred CeEEEEECCCCe--EEEccCCCCCcceeE--EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceE
Q psy10286 524 STVEEFDPVRRV--WNKVSPMCFKRSAVG--AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGG 597 (748)
Q Consensus 524 ~~v~~yd~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~ 597 (748)
..+..+|+.+++ |+.-- ..+..... .+..++++|+..+ -..++++|+.+++ |+.-. +.+-. ..
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~-~~ 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPIS-GA 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGG-SG
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--ccccc-ce
Confidence 357788887765 76622 11223333 3447899998843 2689999998776 76654 22212 22
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCC--cEE-EccCCCCC--CcceeEEEECCEEEEEeccCCCccccEEEEEeC
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWT-SVKPMLTK--RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDP 672 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~-~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 672 (748)
.+..++.+|+..+. +.++.+|..+. .|+ .....+.. +........++.+|+... ...++.+|+
T Consensus 72 ~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEET
T ss_pred eeecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEec
Confidence 47789999888742 37999997766 488 44332322 233344445777777663 258999999
Q ss_pred CCCc--EEEccCCCCCC--------cceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 673 ITDE--WKMIASMNVMR--------SRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 673 ~~~~--W~~~~~~p~~r--------~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
++.+ |..-...+... .....+..++.+|+.++.. .+..+|..++. |+.
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEE
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEe
Confidence 8765 77643333221 1233444568888887632 25666999987 843
|
... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.1 Score=52.37 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=110.3
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-----CCCcc
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-----CFKRS 547 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~ 547 (748)
....++++|+.++.-...... . -.+++.. ++.+|+..+ .....+|+.+++++.+... +..+.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~-~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLP-G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESS-S---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCCEEEEEECCCCeEEEEecC-C---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 346799999998876543322 2 3344444 788888765 2356679999999887654 23334
Q ss_pred eeEEEEECCEEEEEeCCC-CCCCC--ceEEEEeCCCCeEEEcc-CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 548 AVGAAALNDKLYVCGGYD-GVSSL--NTVECYEPDKDQWRIVK-SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~-~~~~~--~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
+-.++.-+|.+|+-.-.. ..... ..++++++. .+.+.+. .+..| .+++.. ++.+|+.--. ...++
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-----~~~i~ 159 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-----NGRIW 159 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-----TTEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccc-----cceeE
Confidence 434444488888753222 11112 579999999 6655553 22222 233333 3467775433 35699
Q ss_pred EEECCCCc--EEEc---cCCCCCC-cceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE
Q psy10286 622 RYDPKTDE--WTSV---KPMLTKR-CRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA 694 (748)
Q Consensus 622 ~yd~~~~~--W~~~---~~~p~~r-~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (748)
+|++.... +... ..++... .--++++- +|.||+..-. .+.|++||++...-..+. +|.+ ..+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~-~p~~--~~t~~~ 231 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE-LPVP--RPTNCA 231 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE--SSS--SEEEEE
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc-CCCC--CEEEEE
Confidence 99986433 4322 2222222 22334443 6889997321 268999999955454443 4433 233333
Q ss_pred E----CCEEEEE
Q psy10286 695 N----MGKLWAI 702 (748)
Q Consensus 695 ~----~~~l~v~ 702 (748)
+ .++|||.
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 3 2567775
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.011 Score=62.32 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=82.8
Q ss_pred ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccc-----cEEEEE--e--
Q psy10286 601 FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFL-----QSVEMY--D-- 671 (748)
Q Consensus 601 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~-----~~v~~y--d-- 671 (748)
.+.+|+.+++. .....||+++..-...+.++.+.....++.++++||++......... ..++.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899998765 34889999999988888877776666777889999999875432211 145554 3
Q ss_pred ------CCCCcEEEccCCCCCCc-------ceEEEEE-CCEEEE-EeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 672 ------PITDEWKMIASMNVMRS-------RVALVAN-MGKLWA-IGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 672 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~l~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
...-.|..+++.|..+. -.+-+++ +..|+| .-|.. ..++.||..+.+|+.+++
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 23346888887665433 2334455 778888 54422 358999999999999877
|
|
| >PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00013 Score=63.26 Aligned_cols=50 Identities=34% Similarity=0.678 Sum_probs=45.4
Q ss_pred hhhHHHHHHHhhcceeEEEe-cccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q psy10286 219 SCRAMEALINFAYSGRVTIH-SQNVQSLMVVASFLQMQKVADACADFLKKR 268 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~-~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~ 268 (748)
+...++.+++|+|++.+.+. .+++.+++..|+.|+++.|++.|+++|.++
T Consensus 60 ~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 60 SPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp CHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 34567779999999999998 999999999999999999999999999753
|
The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A .... |
| >PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.034 Score=58.52 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=84.0
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCccc-----CeEEE--EE--
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIF-----DSVER--YD-- 624 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~~~~--yd-- 624 (748)
.+++|+.+++. .....||+.+..-...+.++.+.....++.++++||++......... ..++. |+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899988664 34889999999988888887777777777789999999886322111 13344 34
Q ss_pred ------CCCCcEEEccCCCCCCc-------ceeEEEE-CCEEEE-EeccCCCccccEEEEEeCCCCcEEEccCCCCCC
Q psy10286 625 ------PKTDEWTSVKPMLTKRC-------RLGVAAL-NNKIYV-CGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687 (748)
Q Consensus 625 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (748)
...-.|+.+++.|..+. -.+.+++ +..|+| +-|.. ...+.||..+.+|+.++....|-
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecCc
Confidence 22346888876554433 2344555 667888 44321 24899999999999998754443
|
|
| >PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00036 Score=59.50 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHH
Q psy10286 180 QSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVAD 259 (748)
Q Consensus 180 ~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~ 259 (748)
.+++..|..+++++|.+.|.+|+.. |+.++....++++++. +
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~------------------------------------nf~~v~~~~~f~~L~~--~ 43 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK------------------------------------NFNEVSKSDEFLELPF--D 43 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH------------------------------------THHHHTTSHHHHCS-H--H
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH------------------------------------HHHHHccchhhhcCCH--H
Confidence 4678899999999999999999887 4556666666666642 1
Q ss_pred HHHHHHhhcCCCCCcchHHHHHhh--cCchHHHHHHHHHHHH-------hhhhhccCcccccCCHHhHhcccc
Q psy10286 260 ACADFLKKRFHPNNVLGIRQFADT--LNCLQLSEAADKYVQQ-------YFHEVSMSDEFIGLGVNEVNDIVK 323 (748)
Q Consensus 260 ~c~~~l~~~l~~~n~~~i~~~a~~--~~~~~l~~~~~~~i~~-------~~~~l~~~~~f~~L~~~~l~~il~ 323 (748)
.....|. ..+. .+..++++++++|+.+ ++.++++..+|..|+.+.|.+.++
T Consensus 44 ~l~~iL~-------------~~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 44 QLIEILS-------------SDDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp HHHHHHH-------------TSS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHCCT
T ss_pred HHHHHHh-------------ccccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHHHC
Confidence 1112222 1111 1345899999999974 477899999999999999987763
|
BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.63 Score=47.80 Aligned_cols=254 Identities=15% Similarity=0.056 Sum_probs=115.8
Q ss_pred ceEeecCCCCceeeccc--ccccceEEeccc-ccccCCCccceEEEEeCCCCceEE-ccCCCcccceeEEEEE--CCEEE
Q psy10286 439 TVEVFDPLVGRWQMAEE--ETLSNAVISTKS-CLTKAGDSLSTVEVFDPLVGRWQM-AEAMSMLRSRVGVAVM--KNRLY 512 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~--~~~~~~~~~~~~-~~~~~g~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~iy 512 (748)
.+..||+.+++-...-. .......+..++ .++..+.....+..||..+++... ++....+ ..++.. ++.+|
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~ 88 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILY 88 (300)
T ss_pred EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEE
Confidence 57777776655322211 111112222332 233333344678899998877644 2221122 122222 44577
Q ss_pred EEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC
Q psy10286 513 AFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 513 v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
+.++.+ ..+..||+.+.+-. ..++......+++. -++.+++++..++ +.+..||..+.+-.......
T Consensus 89 ~~~~~~-----~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~- 156 (300)
T TIGR03866 89 IANEDD-----NLVTVIDIETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD- 156 (300)
T ss_pred EEcCCC-----CeEEEEECCCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC-
Confidence 765422 36889999876422 22221111223333 3677777765331 24556787665432211111
Q ss_pred CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-cc----CCC-CCCcceeEEEE-CC-EEEEEeccCCCcc
Q psy10286 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-VK----PML-TKRCRLGVAAL-NN-KIYVCGGYDGAIF 663 (748)
Q Consensus 592 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~----~~p-~~r~~~~~~~~-~~-~i~v~GG~~~~~~ 663 (748)
.+..+....-++..+++++.. ...+..||..+.+... +. ..+ ......+.+.. ++ .+|+..+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----- 227 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----- 227 (300)
T ss_pred CCccEEEECCCCCEEEEEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-----
Confidence 111222223345444344321 1358889988765422 11 111 11111222222 33 45554432
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+.+.+||..+. +.+........-.++... +++ ||+.++.+ .++.+||..+.+
T Consensus 228 ~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-----~~i~v~d~~~~~ 282 (300)
T TIGR03866 228 ANRVAVVDAKTY--EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-----NDVSVIDVAALK 282 (300)
T ss_pred CCeEEEEECCCC--cEEEEEEeCCCcceEEECCCCCEEEEEcCCC-----CeEEEEECCCCc
Confidence 246889998654 333222222222223222 444 44433322 369999998755
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.33 Score=48.71 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=109.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++.+|+..- ....++++|+.+++-....... ..+++.. ++.+|+..+ .....+|+.+++++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 577887743 2358999999998765543222 3444444 788888765 344667999999988
Q ss_pred ccCCC-----CCCcceEEEEECCEEEEEccCCCC-ccc--CeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC-EEEEE
Q psy10286 586 VKSMQ-----KHRSAGGVIAFDSYVYALGGHDGL-SIF--DSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN-KIYVC 655 (748)
Q Consensus 586 ~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~-~~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~ 655 (748)
+...+ ..+.+-.++.-+|.+|+..-.... ... ..++++++. .+.+.+..- . ....+.+.- ++ .+|+.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheeec
Confidence 86653 223333444447888886432211 111 579999998 666555321 1 112344433 34 57775
Q ss_pred eccCCCccccEEEEEeCCCC--cEEE---ccCCCCCCc-ceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 656 GGYDGAIFLQSVEMYDPITD--EWKM---IASMNVMRS-RVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~--~W~~---~~~~p~~r~-~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
--. .+.|+.|++... .+.. +..++.... --++++ -+|.|||..- ....|.+||++...-..+
T Consensus 152 ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~~~i- 220 (246)
T PF08450_consen 152 DSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLLREI- 220 (246)
T ss_dssp ETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEEEEE-
T ss_pred ccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEEEEE-
Confidence 432 357999988543 2432 223333221 223333 3789999732 114799999996555554
Q ss_pred CCC
Q psy10286 729 PMC 731 (748)
Q Consensus 729 ~~~ 731 (748)
.+|
T Consensus 221 ~~p 223 (246)
T PF08450_consen 221 ELP 223 (246)
T ss_dssp E-S
T ss_pred cCC
Confidence 355
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0511|consensus | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0013 Score=65.91 Aligned_cols=197 Identities=13% Similarity=0.161 Sum_probs=118.1
Q ss_pred HHHHHhcC---CcccEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccccccccccc
Q psy10286 65 MEEIRRQG---KLCDVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTS 140 (748)
Q Consensus 65 l~~l~~~~---~~~Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (748)
+..++++. ...|++|.+ +|+.|.|||..|++||.+|...+..-+... .
T Consensus 137 i~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~--h-------------------------- 188 (516)
T KOG0511|consen 137 IQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG--H-------------------------- 188 (516)
T ss_pred HHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc--C--------------------------
Confidence 45555554 346888876 778899999999999998876554322111 1
Q ss_pred ccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHH------------------------H
Q psy10286 141 DMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVA------------------------D 196 (748)
Q Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~------------------------~ 196 (748)
+|+-..+-+.+|..+|+|+|-..-.+-...-..|+.+...|++..+. .
T Consensus 189 --------eI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~kF~~e~l~~~~~kdr~~~~sR~~k~~q~~~tq~ 260 (516)
T KOG0511|consen 189 --------EIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKFSKEKLSLEISKDRMEDLSRICKVCQCESTQK 260 (516)
T ss_pred --------chhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhccHHHhHHHHhhhHHHHHHHHHHHHhHHHHHH
Confidence 11114567889999999999874333333445556555555554443 3
Q ss_pred HHHHHhhh--------cccCCcc-cchhhh--------------------------------------------------
Q psy10286 197 ACADFLKK--------RFHPNNV-LDYYVL-------------------------------------------------- 217 (748)
Q Consensus 197 ~c~~~l~~--------~l~~~nc-l~i~~~-------------------------------------------------- 217 (748)
..+++|.. +.+..|- .+.+.+
T Consensus 261 ~~~~~Li~~~~~~ykt~~dl~Ns~~~~fsl~~ayiql~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp~ 340 (516)
T KOG0511|consen 261 IIEKELIHQRYAEYKTHRDLDNSPMKRFSLQGAYIQLPEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLPS 340 (516)
T ss_pred HHHHHHHHHHhhhhccchhhccChhheeeeccccccccccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccch
Confidence 33344432 1222222 000000
Q ss_pred hhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHH---HHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHH
Q psy10286 218 FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK---VADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAAD 294 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~---l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~ 294 (748)
......+..+.++|+.+.++..+-+.+++..|+.+.+.. |+.++..-|.+ -..+.+.|+.-++.+.|.
T Consensus 341 ~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq---------~~e~id~y~V~dIl~~~w 411 (516)
T KOG0511|consen 341 LADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQ---------WLELIDMYGVLDILEYCW 411 (516)
T ss_pred HHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHH---------HHHHHHhhhHHHHHHHHH
Confidence 001134557889999999999999999999999887652 44444444443 234456667777777777
Q ss_pred HHHHHhhhhhcc
Q psy10286 295 KYVQQYFHEVSM 306 (748)
Q Consensus 295 ~~i~~~~~~l~~ 306 (748)
.-...++.+...
T Consensus 412 d~~~~rlEqfa~ 423 (516)
T KOG0511|consen 412 DLVACRLEQFAE 423 (516)
T ss_pred HhhhHHHHHHHH
Confidence 766666555443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=1.4 Score=48.46 Aligned_cols=191 Identities=11% Similarity=-0.037 Sum_probs=99.8
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|+.+++...+...+...... ...-+| +|++....++ ..+++.+|..++....+..-+..-. .....-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCC
Confidence 58999999999887776554322221 222245 5544443332 2578999999888776654332111 1112224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ +|+.....++ ...++.+|..+...+.+.... .+.......-+| .|++.. .... ...++.+|+.+.....+
T Consensus 301 G~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~-~~~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 301 GSQIVFESDRSG---SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTK-QGGG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred CCEEEEEECCCC---CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEE-cCCC--ceEEEEEECCCCceEec
Confidence 4 4544332222 257999998887777764321 111111122244 454443 2211 24789999877766665
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCC-CCCCCCeEEEEeCCCCceEecC
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYD-GVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
..-. ....-...-+|+.+++.+.. +......++.+|..++.-+.++
T Consensus 374 t~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 374 TSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred cCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 4321 11111122245544443322 2211247899999887766654
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.063 Score=54.26 Aligned_cols=124 Identities=16% Similarity=0.303 Sum_probs=76.3
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCc-cccEEEEEeCCCCcEEEccC-----CCCCCc
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAI-FLQSVEMYDPITDEWKMIAS-----MNVMRS 688 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-----~p~~r~ 688 (748)
....+..||+.+.+|.....- ....-..+... ++++|+.|-+.... ....+..||.++.+|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 467899999999999988644 22222334434 67777777654443 45678999999999998865 233332
Q ss_pred ceEEEEEC-CEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC-CCCC-CcceEEEEeec
Q psy10286 689 RVALVANM-GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP-MCAH-EGGVGVGVIPI 744 (748)
Q Consensus 689 ~~~~~~~~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~-r~~~~~~~~~~ 744 (748)
.......+ +.+++.|... .....+..| ...+|+.+.. ...+ -.-.+.-++++
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccccccCCCCEEEEEEEEec
Confidence 22222223 5677777652 222345666 5789999877 3332 23334445554
|
|
| >KOG3473|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0063 Score=48.45 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=60.7
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+++. +|.+|-..|-+ |.-|+-.|+||.++...+ +...+++++.++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~s--------------------------------e~~~n~v~f~di 65 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFS--------------------------------EAEKNEVYFRDI 65 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCcccc--------------------------------ccccceEEeccc
Confidence 44554 56777776664 456899999999865433 334455666999
Q ss_pred CHHHHHHHHHhh-----hcee------EEeechhHHHHHHHHHHhcc
Q psy10286 156 DAVAMEALINFV-----YSGR------VTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 156 ~~~~~~~~l~fl-----Ytg~------~~i~~~~v~~ll~~A~~l~i 191 (748)
+..+++.+-+|+ |++. .+|.++-+.+||.+|++|.+
T Consensus 66 ~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 66 PSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLEC 112 (112)
T ss_pred hHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence 999999999887 5654 34888899999999999864
|
|
| >KOG1987|consensus | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0035 Score=65.10 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=73.1
Q ss_pred CeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCCCHHHHHH
Q psy10286 83 DQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEA 162 (748)
Q Consensus 83 ~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (748)
+..+.+|+++++++|++|+.|+..+..+.....+ .+.+.++..++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~----------------------------------~~~d~~~~~~~~ 154 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLI----------------------------------TLLEEKPEVLEA 154 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccc----------------------------------cccccchhhHhh
Confidence 5669999999999999999999876544433322 337889999999
Q ss_pred HHHhhhceeEEeechhHH---HHHHHHHHhcchhHHHHHHHHhhhcccCCc
Q psy10286 163 LINFVYSGRVTIHSQNVQ---SLMVVASFLQMQKVADACADFLKKRFHPNN 210 (748)
Q Consensus 163 ~l~flYtg~~~i~~~~v~---~ll~~A~~l~i~~l~~~c~~~l~~~l~~~n 210 (748)
+..|.|+..-....+.+. .++.+|..++.+.++..|...+...+...+
T Consensus 155 ~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~ 205 (297)
T KOG1987|consen 155 LNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLN 205 (297)
T ss_pred hceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhh
Confidence 999999977655555554 788899999999999999988887544433
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=2.4 Score=46.79 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=97.9
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|+.+++-+.+...+..... ....-+| +|++....++ ..+++.+|..+++.+.+..-..... .....-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDT-EPSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCcc-ceEECCC
Confidence 5799999998877666654422121 1222244 5655543332 2579999999998877754221111 1111224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ .|++....++ ...++.+|..+++++.+..-. .........-++ .|++.+ ..+. ...++.+|+.+...+.+
T Consensus 317 G~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~-~~~g--~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 317 GKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVN-RTNG--KFNIARQDLETGAMQVL 389 (448)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEE-ecCC--ceEEEEEECCCCCeEEc
Confidence 4 5555443322 257999999999988774211 111111222244 455543 3221 34789999999888776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
..-.... ..+ ..-+++.+++....+. ...++++|.. +.+..
T Consensus 390 t~~~~d~-~ps-~spdG~~I~~~~~~~g--~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 390 TSTRLDE-SPS-VAPNGTMVIYSTTYQG--KQVLAAVSID-GRFKA 430 (448)
T ss_pred cCCCCCC-Cce-ECCCCCEEEEEEecCC--ceEEEEEECC-CCceE
Confidence 5322111 122 2234444444332221 2357888874 44544
|
|
| >KOG4682|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0023 Score=64.87 Aligned_cols=120 Identities=17% Similarity=0.309 Sum_probs=91.3
Q ss_pred eeeeeeeeccCHHHH-Hhhcccccccccceeeeecchh----eehhhccccccccccccccccccceeeeecCCCHHHHH
Q psy10286 87 TCHRIVLAATIPYFQ-AMFTSDMAESKQREITMQGIDA----VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAME 161 (748)
Q Consensus 87 ~aHk~iL~a~S~~F~-~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (748)
+.-+++|.. +.||. ++|. ++....|.+..++. +-+--..|+||+.||.|..+|+.++.|++.--++.+=.
T Consensus 47 pkr~~ll~t-~kyiyq~lf~----q~enSDv~l~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~ 121 (488)
T KOG4682|consen 47 PKRKKLLQT-QKYIYQNLFL----QGENSDVILEALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDV 121 (488)
T ss_pred hhHHHHHHH-HHHHHHHHHh----cCCCcceehhhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccH
Confidence 666777765 56665 5554 23334444444443 23445679999999999999999999999877766533
Q ss_pred HHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEeccc
Q psy10286 162 ALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQN 241 (748)
Q Consensus 162 ~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~ 241 (748)
. ++...+.-+|.+.+.|..+.
T Consensus 122 ~-----------------------------------------------------------al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 122 V-----------------------------------------------------------ALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred H-----------------------------------------------------------HHHHHHhhhhhhheeccHHH
Confidence 3 44557788999999999999
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhcCC
Q psy10286 242 VQSLMVVASFLQMQKVADACADFLKKRFH 270 (748)
Q Consensus 242 ~~~l~~~a~~~~l~~l~~~c~~~l~~~l~ 270 (748)
+..++.+|.+++++.+.+.|.+-+.+.|+
T Consensus 143 v~gvlAaA~~lqldgl~qrC~evMie~ls 171 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDGLIQRCGEVMIETLS 171 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999986554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.06 E-value=3.3 Score=46.21 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=137.1
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCc--eeeccccc--------ccceEEecc-cccccCCCccceEEEEeCCCCc
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGR--WQMAEEET--------LSNAVISTK-SCLTKAGDSLSTVEVFDPLVGR 488 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~--W~~~~~~~--------~~~~~~~~~-~~~~~~g~~~~~~~~yd~~~~~ 488 (748)
.++++|+.... ..+.++|..+++ |....... ....+...+ ..++.. .....+..+|..+++
T Consensus 60 ~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~-~~~g~v~AlD~~TG~ 131 (488)
T cd00216 60 VDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG-TFDGRLVALDAETGK 131 (488)
T ss_pred ECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe-cCCCeEEEEECCCCC
Confidence 57788875432 357888887654 76533211 111112222 333332 233578999998775
Q ss_pred --eEEccCCCc-cc--ceeEEEEECCEEEEEccCCCC----CCCCeEEEEECCCCe--EEEccCCC----CCc-------
Q psy10286 489 --WQMAEAMSM-LR--SRVGVAVMKNRLYAFGGYNGS----ERLSTVEEFDPVRRV--WNKVSPMC----FKR------- 546 (748)
Q Consensus 489 --W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~--W~~~~~~~----~~r------- 546 (748)
|+.-...+. .. ...+.++.++.+|+ |..+.. .....++.+|..|.+ |+.-...+ .+.
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~ 210 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQM 210 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcce
Confidence 875432221 11 12233455666665 432211 234578999998764 87532111 110
Q ss_pred ---c---eeEEEEE---CCEEEEEeCCC------------CCCCCceEEEEeCCCCe--EEEccCCCCC---CcceEEEE
Q psy10286 547 ---S---AVGAAAL---NDKLYVCGGYD------------GVSSLNTVECYEPDKDQ--WRIVKSMQKH---RSAGGVIA 600 (748)
Q Consensus 547 ---~---~~~~~~~---~~~iyv~GG~~------------~~~~~~~~~~yd~~~~~--W~~~~~~~~~---r~~~~~~~ 600 (748)
. -.+..++ ++.+|+-.|.. .....+.++.+|..+.+ |+.-...+.. +.....+.
T Consensus 211 ~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~ 290 (488)
T cd00216 211 WGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSL 290 (488)
T ss_pred ecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeE
Confidence 0 0011222 46777654421 01123579999998775 8764322110 11111111
Q ss_pred -----ECCE---EEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEECCEEEEEeccC-----------
Q psy10286 601 -----FDSY---VYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAALNNKIYVCGGYD----------- 659 (748)
Q Consensus 601 -----~~~~---iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~----------- 659 (748)
.++. +.++|..+ ..++.+|.++.+ |+.-.. ...++.-.+.+|+-....
T Consensus 291 ~~~~~~~g~~~~~V~~g~~~-----G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 291 ADIKPKDGKPVPAIVHAPKN-----GFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred EeccccCCCeeEEEEEECCC-----ceEEEEECCCCcEeeEeEee------ccccccCCceEEEccccccccCcccccCC
Confidence 2232 34444432 358999998875 765321 011112226666643210
Q ss_pred -CCccccEEEEEeCCCCc--EEEccC-CC------CCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 660 -GAIFLQSVEMYDPITDE--WKMIAS-MN------VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 660 -~~~~~~~v~~yd~~~~~--W~~~~~-~p------~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
.......+..+|..+.+ |+.-.. -. .+......+..++.||+ |..+ ..++.+|.++++ |+.
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~d-----G~l~ald~~tG~~lW~~ 432 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAAD-----GYFRAFDATTGKELWKF 432 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECCC-----CeEEEEECCCCceeeEE
Confidence 01123468889987764 876321 00 11222334444555554 4432 258999998874 663
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.5 Score=44.50 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=115.5
Q ss_pred ccccCCCccceEEEEeCC-CCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCC
Q psy10286 468 CLTKAGDSLSTVEVFDPL-VGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPM 542 (748)
Q Consensus 468 ~~~~~g~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~ 542 (748)
.++..+.....+..|+.. +++++.+...+.+..-..++.. ++.+|+.+-. .+.+..||..++. ...+...
T Consensus 48 ~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~ 122 (330)
T PRK11028 48 HLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQII 122 (330)
T ss_pred EEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeec
Confidence 344443444567667665 4566655443322222223333 4457765421 2456677765321 1222222
Q ss_pred CCCcceeEEEEE-C-CEEEEEeCCCCCCCCceEEEEeCCCCe-EEEcc----CCCCCCcceEEEEE--CCEEEEEccCCC
Q psy10286 543 CFKRSAVGAAAL-N-DKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVK----SMQKHRSAGGVIAF--DSYVYALGGHDG 613 (748)
Q Consensus 543 ~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~ 613 (748)
+.....|+++.. + +.+|+..- ..+.+..||..++. ..... ..+....-+.++.. +..+|+....
T Consensus 123 ~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-- 195 (330)
T PRK11028 123 EGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-- 195 (330)
T ss_pred cCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--
Confidence 222233554444 3 36666542 23578889887632 21110 11111111223333 3467776543
Q ss_pred CcccCeEEEEECC--CCcEEEc---cCCC----CCCcceeEEEE-CC-EEEEEeccCCCccccEEEEEeC--CCCcEEEc
Q psy10286 614 LSIFDSVERYDPK--TDEWTSV---KPML----TKRCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDP--ITDEWKMI 680 (748)
Q Consensus 614 ~~~~~~~~~yd~~--~~~W~~~---~~~p----~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~ 680 (748)
.+.+..||.. +++++.+ ..+| .+|....+... ++ .+|+... . .+.+.+|+. ....++.+
T Consensus 196 ---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-~----~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 196 ---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-T----ASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred ---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-C----CCeEEEEEEeCCCCeEEEe
Confidence 2466666654 4454333 2232 23322222222 33 5666522 1 245666655 44456555
Q ss_pred cCCCC---CCcceEEEEECCEEEEEeCCCCCCCCCeEEEE--eCCCCceEecCCCCCCCcceEEEE
Q psy10286 681 ASMNV---MRSRVALVANMGKLWAIGGYDGVSNLPTVEVY--DPSTDSWAFVAPMCAHEGGVGVGV 741 (748)
Q Consensus 681 ~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~ 741 (748)
+..+. +| ......-+..||+.+..+ +.+.+| |.+++.++.+...+....-.++.+
T Consensus 268 ~~~~~~~~p~-~~~~~~dg~~l~va~~~~-----~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 268 GHQPTETQPR-GFNIDHSGKYLIAAGQKS-----HHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEeccccCC-ceEECCCCCEEEEEEccC-----CcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 44332 22 122222255677765322 345555 667788988877766554444444
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.36 Score=50.39 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=98.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCE-EEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDK-LYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
...+.+++|.++. -.++..|-.+|. .+.++...++.-..+.+ +|+ ..+++|. -.-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 4568888887643 345666666665 44444322222222222 555 6666663 367899999999988
Q ss_pred EccCCCC--CCcc-eEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCC
Q psy10286 585 IVKSMQK--HRSA-GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661 (748)
Q Consensus 585 ~~~~~~~--~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 661 (748)
++.++-. .+.. .-.+..++...++.|.+| -++.....|++|..--.++..-...+....+..||+.||.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 8865431 1111 122334556667777643 4778888888885433333333333333445678888885
Q ss_pred ccccEEEEEeCCCCc----EEEccCCCCCCcceEEE-EECCEEEEEeC
Q psy10286 662 IFLQSVEMYDPITDE----WKMIASMNVMRSRVALV-ANMGKLWAIGG 704 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~~~-~~~~~l~v~GG 704 (748)
..||++|...+. |..-+.. .+-+.| ..++.++..|-
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGS 406 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEecc
Confidence 489999998873 4433332 233333 34666555553
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.69 Score=46.08 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=110.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEEC-----CCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDP-----VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ 582 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~-----~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 582 (748)
++++|++.|..+. .++.|.- ..+++...-.+|.+-.+.+.++++|.+|---. ..+.+.+||..++.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 5678888886543 4555532 33344444457777788888999999887644 35789999999987
Q ss_pred EEEccCCCCCCcc------------eEEEEECCEEEEEccCCCCcccCeEEEEECCCC----cEEEccCCCCCCcceeEE
Q psy10286 583 WRIVKSMQKHRSA------------GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD----EWTSVKPMLTKRCRLGVA 646 (748)
Q Consensus 583 W~~~~~~~~~r~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~ 646 (748)
-.....+|.+... .-.++-++-|+++-...+....-.+-+.||.+- +|.. ..+. +....+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k-~~~~naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPK-RSAGNAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCc-hhhccee
Confidence 5533334333222 233444666777755433221234566777654 4653 2322 3333456
Q ss_pred EECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-CCCCCCcceEEEEE---CCEEEEEe
Q psy10286 647 ALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-SMNVMRSRVALVAN---MGKLWAIG 703 (748)
Q Consensus 647 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~l~v~G 703 (748)
++-|.+|++...+... ..-.+.||..+++=..+. +++.+-..++++.+ +.+||++-
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 6678999998765433 345678999988766542 22333345666665 58899883
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.5 Score=46.54 Aligned_cols=148 Identities=8% Similarity=-0.037 Sum_probs=80.8
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (748)
..++.+|+.+++-+.+...+.........--+..|++....++ ..+++.+|..+++.+.+......-... ...-++
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG 317 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEP-SWHPDG 317 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccce-EECCCC
Confidence 5789999988877666554422221111112345665543332 257999999999888775432111111 112244
Q ss_pred -EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 651 -KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 651 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.|++....++ ...+|.+|..+.+++.+..-. .........-+|+.+++.+... ....++.+|+.++..+.+.
T Consensus 318 ~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~--g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 318 KSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTN--GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecC--CceEEEEEECCCCCeEEcc
Confidence 4555443322 258999999999988874211 1111112222444444433322 1246899999888876654
|
|
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.62 Score=44.74 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEcc----CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVK----SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
++...++++|+|-| +.+|+++..... -..+. .+|. .. -++... ++++|+|-|. ..|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~I-DAa~~~~~~~~~yfFkg~-------~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PV-DAAFERPDTGKIYFFKGD-------KYW 74 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-Cc-cEEEEECCCCEEEEECCC-------EEE
Confidence 34445699999977 467777754211 11111 1221 12 223333 3899999874 688
Q ss_pred EEECCCCcEE---EccCCCCCC--cc-eeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----c----cCCC
Q psy10286 622 RYDPKTDEWT---SVKPMLTKR--CR-LGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----I----ASMN 684 (748)
Q Consensus 622 ~yd~~~~~W~---~~~~~p~~r--~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p 684 (748)
+||..+..+. .+...+.+. .. -++... ++++|++.| +..|.||...++... + ..+|
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 8886642221 111111111 11 222233 589999988 678899876654321 1 1122
Q ss_pred CCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 685 VMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 685 ~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
. .--++... ++++|+|-| +..+.||..+.+
T Consensus 148 ~--~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 148 D--KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred C--CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 2 11223333 489999987 578999998776
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >KOG2714|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.015 Score=59.88 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=69.0
Q ss_pred EEEEECCeEEeeeeeeeeccC--HHHHHhhcccccccccce--eeeecchheehhhccccccccccccccccccceeeee
Q psy10286 77 VTIKVDDQSFTCHRIVLAATI--PYFQAMFTSDMAESKQRE--ITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITM 152 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S--~~F~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (748)
|.|.|+|+.|.-.+--|+-.. .+|.+++++.+...+.+. |.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iF----------------------------------- 57 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIF----------------------------------- 57 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceE-----------------------------------
Confidence 678899999998888886654 699999998876554433 32
Q ss_pred cCCCHHHHHHHHHhhhceeEEeechhHHHHHH-HHHHhcchhHHH
Q psy10286 153 QGIDAVAMEALINFVYSGRVTIHSQNVQSLMV-VASFLQMQKVAD 196 (748)
Q Consensus 153 ~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~-~A~~l~i~~l~~ 196 (748)
-+=+|+.|..+|+||-||++++.......++. -|.+|++..++.
T Consensus 58 IDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 58 IDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred ecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence 26689999999999999999997776666666 999999998876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=95.82 E-value=2.6 Score=43.09 Aligned_cols=175 Identities=17% Similarity=0.093 Sum_probs=85.5
Q ss_pred ceEEEEeCCCCceEEccCC-CcccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAM-SMLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
..+..||+.+++-...-.. ..++ +++.. + +.+|+.++. .+.+..||..+.+....-+.... ....+.
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~ 80 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSGPD--PELFAL 80 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCCCC--ccEEEE
Confidence 4788889887764332221 1122 22222 3 457777653 24688999988766442111111 122222
Q ss_pred E-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 L-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
. + +.+|+.++.+ ..+..||+.+.+- +..++......+++. -++.+++++..++ +.+..||..+.+-
T Consensus 81 ~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 81 HPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred CCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 2 3 4566665432 4688899887542 222221111123333 3566666665432 2456678776543
Q ss_pred EEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcE
Q psy10286 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEW 677 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 677 (748)
...... ..+..+....-+++.+++++.. ...+..||..+.+.
T Consensus 150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 150 VDNVLV-DQRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRKV 191 (300)
T ss_pred EEEEEc-CCCccEEEECCCCCEEEEEcCC----CCEEEEEEcCccee
Confidence 221111 1112222223355544444422 14688899887653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.22 Score=49.23 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=99.9
Q ss_pred EEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 503 GVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 503 ~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
+... .+|.+|..-|..+. +.+.+||+.+++-....++|..-.+-+++.++++||..==. -...+.||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 3444 47899988776543 57889999999887778888888899999999999998543 35789999875
Q ss_pred eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc---c--CCCCCCcceeEEEECCEEEEEe
Q psy10286 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV---K--PMLTKRCRLGVAALNNKIYVCG 656 (748)
Q Consensus 582 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~--~~p~~r~~~~~~~~~~~i~v~G 656 (748)
.+.+...+.+..+-+++..+..+++--|. +.++..||++-+=..- . ..|..+ .--.-.++|.||.=
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i~G~IyAN- 190 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYINGKIYAN- 190 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEEEEE-
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCC-cEeEEEEcCEEEEE-
Confidence 45566666667888899888899998884 6899999986543221 1 111111 11122335555432
Q ss_pred ccCCCccccEEEEEeCCCCc---EEEcc
Q psy10286 657 GYDGAIFLQSVEMYDPITDE---WKMIA 681 (748)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~---W~~~~ 681 (748)
--..+.|.+-||.++. |..+.
T Consensus 191 ----VW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 191 ----VWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp ----ETTSSEEEEEETTT-BEEEEEE-H
T ss_pred ----eCCCCeEEEEeCCCCeEEEEEEhh
Confidence 1235789999999986 55443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >cd00094 HX Hemopexin-like repeats | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.65 Score=44.59 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=78.4
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCeE--EEc----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVW--NKV----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVEC 575 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 575 (748)
+....+.+|+|-| +.+|+++...... ..+ +.+|.. --++... ++++|+|-| +..|+
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~--IDAa~~~~~~~~~yfFkg-------~~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSP--VDAAFERPDTGKIYFFKG-------DKYWV 75 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCC--ccEEEEECCCCEEEEECC-------CEEEE
Confidence 3444689999977 4678887652211 112 223321 1122232 389999977 46788
Q ss_pred EeCCCCeEE---Ecc--CCCC--CCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEc-----c-C-CCCC
Q psy10286 576 YEPDKDQWR---IVK--SMQK--HRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-----K-P-MLTK 639 (748)
Q Consensus 576 yd~~~~~W~---~~~--~~~~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----~-~-~p~~ 639 (748)
||..+..+. .+. ..+. .... ++... ++++|+|.|. ..|+||...++...- . . ...+
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 876542221 111 1111 1122 23333 6899999984 788998766554211 1 0 0112
Q ss_pred CcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 640 RCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 640 r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
..--++.... +++|++-| +..++||..+.+
T Consensus 148 ~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 148 DKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 2222333344 89999988 689999988765
|
; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.9 Score=45.89 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=80.6
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (748)
..++.+|+.+++-+.+...+..-. .....-+| +|++....++ ..+++.+|..+..++.+...+..-... ...-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCC
Confidence 579999999888777654432111 11112244 5554432222 257999999999888775432211111 11223
Q ss_pred -CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 650 -NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 650 -~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.+|++....++ ...++.+|..+.++..+.... .........- ++.|++....++ ...++.+|+.++.++.+
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEc
Confidence 45655543222 257999999988888764221 1111111222 445555443222 23689999998887766
Q ss_pred CC
Q psy10286 728 AP 729 (748)
Q Consensus 728 ~~ 729 (748)
..
T Consensus 371 t~ 372 (430)
T PRK00178 371 TD 372 (430)
T ss_pred cC
Confidence 44
|
|
| >smart00875 BACK BTB And C-terminal Kelch | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.017 Score=48.78 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=58.7
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHH
Q psy10286 181 SLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADA 260 (748)
Q Consensus 181 ~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~ 260 (748)
+++.+|..++.+.|.+.|..|+.++ +..+....+|..++. ..
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n------------------------------------f~~~~~~~~f~~L~~-~~- 44 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN------------------------------------FLEVAQSEEFLELSL-EQ- 44 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH------------------------------------HHHHhcCcHHhcCCH-HH-
Confidence 5677889999999999998888763 444544445555541 11
Q ss_pred HHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHh------hhhhccCcccccCCHHhHhc
Q psy10286 261 CADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQY------FHEVSMSDEFIGLGVNEVND 320 (748)
Q Consensus 261 c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~------~~~l~~~~~f~~L~~~~l~~ 320 (748)
....|. .+.+. ..+..++++++.+|+.++ +..++++.+|..++.+.+..
T Consensus 45 l~~iL~----~d~l~-------v~~E~~v~~av~~W~~~~~~~~~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 45 LLSLLS----SDDLN-------VPSEEEVFEAVLRWVKHDPERRRHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHhC----cccCC-------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhCCCCCCCHHHHHh
Confidence 112221 11110 012357899999999754 55688899999999887764
|
The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=4.1 Score=44.70 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=98.1
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF 601 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 601 (748)
...++++|..+++...+...+... ......-+| +|++....++ ..+++.+|+.++..+.+..-....... ...-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~-~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN-GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc-cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECC
Confidence 357999999988877776544221 111222244 5654433332 257999999988776654322111111 1122
Q ss_pred CC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEE-EE-CCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 602 DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA-AL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 602 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
+| +|++.....+ ...++.+|..+++++.+... ........ .- ++.|++..+.++ ...++.+|+.++.++
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 44 4544433322 24799999988888776421 11221222 22 445555544221 247999999998888
Q ss_pred EccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 679 MIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+..-... ..-...-+++.+++....+ ....++.+|...+.
T Consensus 374 ~Lt~~~~~--~~p~~spdG~~i~~~s~~~--g~~~L~~~~~~g~~ 414 (433)
T PRK04922 374 TLTPGSLD--ESPSFAPNGSMVLYATREG--GRGVLAAVSTDGRV 414 (433)
T ss_pred ECCCCCCC--CCceECCCCCEEEEEEecC--CceEEEEEECCCCc
Confidence 77532211 1112233566555543322 12468888886544
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.13 Score=50.82 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=99.7
Q ss_pred EEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 550 GAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 550 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
+... .+|.+|..-|..|. +.+..||+.+++-....++|..-++=+++.++++||..--. ......||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 4555 57899988786554 57889999999988888898888888999999999998766 34689999975
Q ss_pred cEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceE------EEEECCEEEEE
Q psy10286 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA------LVANMGKLWAI 702 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~------~~~~~~~l~v~ 702 (748)
.+.+...+.+..+.+.+.-++.+++.-| .+.++..||++-+=.. .+.....+.. +-.++|.||.=
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEEETTEEEEE
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECC------ccceEEECCcccceEE--EEEEEECCEECCCcEeEEEEcCEEEEE
Confidence 4566666667788899988888999888 4789999998643222 1111111111 12235554431
Q ss_pred eCCCCCCCCCeEEEEeCCCCceE
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.-..+.|.+.||+++.-.
T Consensus 191 -----VW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 191 -----VWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp -----ETTSSEEEEEETTT-BEE
T ss_pred -----eCCCCeEEEEeCCCCeEE
Confidence 113467889999998643
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.44 Score=49.77 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce--EEEEECCE-EEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG--GVIAFDSY-VYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
...+.+++|.++. -.++..|-++|. .+.++...++-- +...-+|. ..+++|. ..-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 3467777887642 244444555554 333332222211 11222444 7777776 356899999999988
Q ss_pred EccCCC---CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC
Q psy10286 632 SVKPML---TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 632 ~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
++.++- .+-...-.+..++.++++-|.+| -|+.+..+|++|..--.++......+....+.+|++.||..
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G-- 366 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG-- 366 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc--
Confidence 886532 22222233445666666766543 57778888888866444444344444444456777787742
Q ss_pred CCCCeEEEEeCCCCc
Q psy10286 709 SNLPTVEVYDPSTDS 723 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~ 723 (748)
.||++|...+.
T Consensus 367 ----eV~v~nl~~~~ 377 (514)
T KOG2055|consen 367 ----EVYVWNLRQNS 377 (514)
T ss_pred ----eEEEEecCCcc
Confidence 69999998863
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.2 Score=50.63 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCc-ccCeEEEEECCCCcEEEccCC-----CCCCc
Q psy10286 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLS-IFDSVERYDPKTDEWTSVKPM-----LTKRC 641 (748)
Q Consensus 569 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~-----p~~r~ 641 (748)
.-..+..||+.+.+|.....-- .-.-.++... ++++|+.|-..-.+ ....+-.||..+.+|+.++.. |.+-.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGI-SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCc-eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4578999999999999886441 1112333333 67888777653222 356789999999999988752 32322
Q ss_pred ceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEccC
Q psy10286 642 RLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS 682 (748)
Q Consensus 642 ~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (748)
.......+ +.+++.|... .....+..|| ..+|..++.
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 11111123 4677777652 2234677775 668998865
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=95.46 E-value=3.1 Score=41.50 Aligned_cols=204 Identities=16% Similarity=0.152 Sum_probs=90.9
Q ss_pred cceEEEEeCCCCceEEccCCCccc-ceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLR-SRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
-..+..||..+++.... +.... .-.++... ++.+++.|+.+ ..+..||..+.+-...-. .....-.++..
T Consensus 72 ~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~ 143 (289)
T cd00200 72 DKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAF 143 (289)
T ss_pred CCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEE
Confidence 45788888877532211 11111 11222333 34566666522 468889988654322211 11111222333
Q ss_pred EC-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC-cceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 LN-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR-SAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.. +.+++.|+.+ ..+..||..+.+- ...+.... .-.++... ++..+++|+.+ ..+..||..+.+.
T Consensus 144 ~~~~~~l~~~~~~-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~ 211 (289)
T cd00200 144 SPDGTFVASSSQD-----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKC 211 (289)
T ss_pred cCcCCEEEEEcCC-----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCce
Confidence 33 4555544423 3678888764431 11111111 11222322 44355555543 3688899876443
Q ss_pred EEccCCCCCCcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce-EEEEE-CCEEEEEeCCCC
Q psy10286 631 TSVKPMLTKRCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV-ALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~ 707 (748)
...-. .....-.++.... +.+++.|+.+ ..+..||..+.. .+..++...... ++... ++..++.||.++
T Consensus 212 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 212 LGTLR-GHENGVNSVAFSPDGYLLASGSED-----GTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred ecchh-hcCCceEEEEEcCCCcEEEEEcCC-----CcEEEEEcCCce--eEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence 32211 1111222333333 4566665523 467888877533 222222211122 22222 346777777543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.45 E-value=3.6 Score=44.88 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=87.3
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+|+..++....+. ...++.+|..++....+...+...... ...-++ .|++....++ ..+++.+|..++..+.+
T Consensus 200 dg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 200 DGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRL 273 (417)
T ss_pred CCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEEC
Confidence 5544444443322 257899999888766665443222221 122244 5665543322 25799999998887777
Q ss_pred cCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEE-EECCEEEEEeCCCCCCCC
Q psy10286 634 KPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV-ANMGKLWAIGGYDGVSNL 711 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~ 711 (748)
.......... ...-++ +|++.....+ ...+|.+|..+..+..+..-. ....... .-+++.+++..... ..
T Consensus 274 ~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~--~~ 345 (417)
T TIGR02800 274 TNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG--GG 345 (417)
T ss_pred CCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC--Cc
Confidence 5432211111 112244 4555443322 248999999988887764321 1112222 23566666654332 22
Q ss_pred CeEEEEeCCCCceEecC
Q psy10286 712 PTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 712 ~~v~~yd~~~~~W~~~~ 728 (748)
..++.+|+.++.++.+.
T Consensus 346 ~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 346 FNIAVMDLDGGGERVLT 362 (417)
T ss_pred eEEEEEeCCCCCeEEcc
Confidence 47899999888777664
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4591|consensus | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.038 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=16.7
Q ss_pred ccCCcccchhhhhhhhHHHHHHHhh
Q psy10286 206 FHPNNVLDYYVLFSCRAMEALINFA 230 (748)
Q Consensus 206 l~~~ncl~i~~~~~~~~~~~ll~~~ 230 (748)
++++||+.++.++..-..+++.+++
T Consensus 166 l~V~NCIk~Ye~AEe~n~~qL~n~~ 190 (280)
T KOG4591|consen 166 LHVDNCIKFYEFAEELNARQLMNVA 190 (280)
T ss_pred hhHhhHHHHHHHHHHhhHHHHHHHH
Confidence 4567888877776666665555554
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.3 Score=44.93 Aligned_cols=211 Identities=18% Similarity=0.210 Sum_probs=104.7
Q ss_pred ceEEEEeCCCCceEE-ccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeE-EEccCCCCCcceeEEEE
Q psy10286 477 STVEVFDPLVGRWQM-AEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVW-NKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~~ 553 (748)
..+..|+..+..-.+ ... ..+.-+++... +|++...|+.+| -|.+||..+..- ..+..-..|-..--...
T Consensus 48 ~rvqly~~~~~~~~k~~sr--Fk~~v~s~~fR~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~ 120 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSR--FKDVVYSVDFRSDGRLLAAGDESG-----HVKVFDMKSRVILRQLYAHQAPVHVTKFSP 120 (487)
T ss_pred cEEEEEecchhhhhhhHHh--hccceeEEEeecCCeEEEccCCcC-----cEEEeccccHHHHHHHhhccCceeEEEecc
Confidence 456677766543211 111 11222333333 899999998654 578899544110 00000001111112233
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC---CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC-c
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK---HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD-E 629 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~ 629 (748)
.++.+++.|+-+ .-+..+|..+..- ...+.. .....++...++.|++.||+++ .+-.||+.+. .
T Consensus 121 ~d~t~l~s~sDd-----~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 121 QDNTMLVSGSDD-----KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTS 188 (487)
T ss_pred cCCeEEEecCCC-----ceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCc
Confidence 588899988743 2344555555542 112211 1111233334788999999976 4777887776 4
Q ss_pred EEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce----EEEEE--CCEEEE
Q psy10286 630 WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV----ALVAN--MGKLWA 701 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~----~~~~~--~~~l~v 701 (748)
|.. .+...-.--.++.+ +..|.-.|| +.+-++|..+.. .++..+..| +|..+ +++=++
T Consensus 189 ~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 189 RVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred eeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEe
Confidence 432 22211111122333 344555566 678888876442 222222211 22222 456677
Q ss_pred EeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
-||.++ .|-+|| +..|+.+
T Consensus 255 S~sLD~-----~VKVfd--~t~~Kvv 273 (487)
T KOG0310|consen 255 SGSLDR-----HVKVFD--TTNYKVV 273 (487)
T ss_pred eccccc-----ceEEEE--ccceEEE
Confidence 777665 378888 4445544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=4.2 Score=44.68 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=79.9
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (748)
..++.+|..+++-+.+...+.... .....-+| +|++....++ ..+++.+|+.+++...+......-... ...-+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spD 302 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPD 302 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECCC
Confidence 578999999888777765543211 11222244 5655443332 257999999998877664322111111 12224
Q ss_pred CE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE--ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 650 NK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA--NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 650 ~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
++ |++.....+ ...+|.+|..+.+++.+..- ......... -++.|++..+.+ ....++++|+.++.++.
T Consensus 303 G~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~---~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 303 GKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSG---GQYRIAVMDLSTGSVRT 374 (433)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCC---CceeEEEEECCCCCeEE
Confidence 44 444433322 25799999988888776421 112222222 244555554422 12378999998888776
Q ss_pred cC
Q psy10286 727 VA 728 (748)
Q Consensus 727 ~~ 728 (748)
+.
T Consensus 375 Lt 376 (433)
T PRK04922 375 LT 376 (433)
T ss_pred CC
Confidence 54
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=95.30 E-value=3.5 Score=41.11 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++..+++|+.+ ..+..||..+++....-.. ....-.++... ++++++.|+.+ ..+..||..+..-...
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTT 130 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEEEec-cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEE
Confidence 44456666643 4688888877532211111 11112222222 34666666633 4688899875543222
Q ss_pred cCCCCCCcceEEEEEC-CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC-cceeEEEE-CCEEEEEeccCCCcc
Q psy10286 587 KSMQKHRSAGGVIAFD-SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR-CRLGVAAL-NNKIYVCGGYDGAIF 663 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~i~v~GG~~~~~~ 663 (748)
-. .....-.++.... +.+++.|+.+ ..+..||..+.+- +..+.... .-.++... ++..+++|+.+
T Consensus 131 ~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---- 198 (289)
T cd00200 131 LR-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD---- 198 (289)
T ss_pred ec-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC----
Confidence 11 1111122333333 4554444423 3588888864432 11111111 11222222 34355555542
Q ss_pred ccEEEEEeCCCCcEEEccCC-CCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 664 LQSVEMYDPITDEWKMIASM-NVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
..+.+||..+.+... .+ .....-.++... ++.+++.|+.+ ..+.+||..+.
T Consensus 199 -~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~i~~~~~~ 251 (289)
T cd00200 199 -GTIKLWDLSTGKCLG--TLRGHENGVNSVAFSPDGYLLASGSED-----GTIRVWDLRTG 251 (289)
T ss_pred -CcEEEEECCCCceec--chhhcCCceEEEEEcCCCcEEEEEcCC-----CcEEEEEcCCc
Confidence 468889987643332 22 111122223333 35566665522 35788887653
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=95.20 E-value=2.7 Score=41.64 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=104.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEE----CCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFD----PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd----~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++++|+..|.. ...+.++.|. ....++...-.+|.+-.+.+.++++|.+|.--. ....+.+||..+++-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcE
Confidence 46788877643 1234566664 233444444457788888899999999998643 236799999999986
Q ss_pred EEccCCCCCCc------------ceEEEEECCEEEEEccCCCCcccCeEEEEECCCC----cEEEccCCCCCCcceeEEE
Q psy10286 584 RIVKSMQKHRS------------AGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD----EWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 584 ~~~~~~~~~r~------------~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~ 647 (748)
.....+|.+.+ ..-.++-++-|+++=......-.-.+-+.||.+- +|.. ..+ .+....+.+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~-k~sa~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYN-KRSASNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC-cccccccEE
Confidence 55544543211 1123444555665533322111123456777654 4554 222 223334556
Q ss_pred ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC--CCcceEEEEE---CCEEEEE
Q psy10286 648 LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV--MRSRVALVAN---MGKLWAI 702 (748)
Q Consensus 648 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~---~~~l~v~ 702 (748)
+-|.+|++-..+ .....-.+.||+.+++=.. ..+|. +...++++-+ +.+||+.
T Consensus 184 vCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 184 ICGILYVTRSLG-SKGEKVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred EeeEEEEEccCC-CCCcEEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeEEEE
Confidence 678999996322 1223346789998876333 33333 3344555555 5788887
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=3.2 Score=44.45 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=86.7
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC-
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD- 581 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 581 (748)
+..++++|+... + ..++.+|+.+.+ |+....--.....-....-+|+||+- ..++ .+++||..+.
T Consensus 65 ~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWDG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-cccc-----eEEEEECCCCc
Confidence 666899998611 1 278999999886 86543310011111122227887764 3332 7899998544
Q ss_pred -eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--cEEEccCC-CCCCcceeEEEECCEEEEEec
Q psy10286 582 -QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWTSVKPM-LTKRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 582 -~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG 657 (748)
.|+.-.+.. ++.....++.++.+|+... ...++++|..+. .|+.-.+. ...+.....+.-++.+|+-.
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~- 204 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGTD------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS- 204 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEecC------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec-
Confidence 587765442 4445555666777777641 246888888754 58754332 12222222234455555543
Q ss_pred cCCCccccEEEEEeCCCC--cEEE
Q psy10286 658 YDGAIFLQSVEMYDPITD--EWKM 679 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~--~W~~ 679 (748)
.+ . ...++.+|+.+. .|..
T Consensus 205 ~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CC--C-cceEEEEEccCCcEeeee
Confidence 22 1 236889998765 4875
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=7.2 Score=42.83 Aligned_cols=191 Identities=10% Similarity=-0.039 Sum_probs=94.3
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
...+|..|.....=..+..-... ...-...-+|+-.++....+. ...++.+|+.+++.+.+...+....... ..-+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~-~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPR-FSPD 256 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcE-ECCC
Confidence 56788888765432222211111 111111225543333322211 2689999999988877765543222111 2224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
| +|++....++ ..+++.+|..+.....+...+..-. .....-+++ |+.....++ ...+|.+|..+...+.+
T Consensus 257 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEe
Confidence 4 5554443332 3579999999888777754332111 112222444 444332222 25799999888777776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
..............-++.|++... ... ...++++|+.++..+.+
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEc-CCC--ceEEEEEECCCCceEec
Confidence 432111111111122344444432 211 24688888876655544
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.9 Score=43.21 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=66.8
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCc-----ceeEEEEEC-CEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKR-----SAVGAAALN-DKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 574 (748)
+-++.++.+|+.... ..++.+|..+.+ |+.-...+..+ .....+..+ +++|+... -..+.
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 345669999986542 468889988764 87643222000 111234446 88886432 24788
Q ss_pred EEeCCCCe--EEEccCCCC-C--CcceEEEEECCEEEEEccCCCC----cccCeEEEEECCCC--cEEEc
Q psy10286 575 CYEPDKDQ--WRIVKSMQK-H--RSAGGVIAFDSYVYALGGHDGL----SIFDSVERYDPKTD--EWTSV 633 (748)
Q Consensus 575 ~yd~~~~~--W~~~~~~~~-~--r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~--~W~~~ 633 (748)
.+|..+.+ |+.-...+. . ....+.++.++.+|+ |..+.. .....++.+|..+. .|+.-
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 99988664 876543221 1 112344556777665 432111 12357899999876 48753
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.2 Score=42.74 Aligned_cols=185 Identities=9% Similarity=-0.044 Sum_probs=98.1
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++++|+.+++-+.+...+..-. .....-+| +|++....++ ..+++.+|..++..+.+..-+..-.......-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeEECCCC
Confidence 479999999888777654432111 11122244 4554332222 258999999999887775432211111111123
Q ss_pred CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 603 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
..|++....++ ...++.+|..+++++.+.... .........-+ +.|++....++ ...++.+|..+..++.+.
T Consensus 299 ~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 299 RTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEcc
Confidence 45665543222 257999999998887764221 11111112223 45555443222 346999999999888875
Q ss_pred CCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 682 SMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 682 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
...... .. ...-+|+.+++....+. ...++..+...+.
T Consensus 372 ~~~~~~-~p-~~spdg~~i~~~~~~~g--~~~l~~~~~~g~~ 409 (430)
T PRK00178 372 DTSLDE-SP-SVAPNGTMLIYATRQQG--RGVLMLVSINGRV 409 (430)
T ss_pred CCCCCC-Cc-eECCCCCEEEEEEecCC--ceEEEEEECCCCc
Confidence 432111 11 22335666666443222 2357777775543
|
|
| >smart00512 Skp1 Found in Skp1 protein family | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.039 Score=46.90 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=58.4
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+. +|++|.+.+.+. ..|..++.|+...-.+.. ....|.+++|
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~---------------------------------~~~~Ipl~~v 49 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDE---------------------------------NNNPIPLPNV 49 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccC---------------------------------CCCCccCCCc
Confidence 56664 788999999876 479999999975321111 1134555999
Q ss_pred CHHHHHHHHHhhhceeE-----------E--------eechhHHHHHHHHHHhcc
Q psy10286 156 DAVAMEALINFVYSGRV-----------T--------IHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~-----------~--------i~~~~v~~ll~~A~~l~i 191 (748)
+..+++.+++|++--.- . ++.+.+.+|+.||++|++
T Consensus 50 ~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 50 TSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred CHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999984321 1 555578999999999875
|
Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.78 E-value=9 Score=43.11 Aligned_cols=202 Identities=19% Similarity=0.267 Sum_probs=108.9
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC--------cceeEEEEECCEEEEEeCCCCCCCCceE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK--------RSAVGAAALNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (748)
-++.++.||+.... ..++.+|..|.+ |+.-...+.. ....+.+..+++||+... + ..+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----CEE
Confidence 35669999986542 358889988754 8764432211 112234566888886432 2 468
Q ss_pred EEEeCCCCe--EEEccC-CCCC-CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEcc--CCCC-------
Q psy10286 574 ECYEPDKDQ--WRIVKS-MQKH-RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVK--PMLT------- 638 (748)
Q Consensus 574 ~~yd~~~~~--W~~~~~-~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~--~~p~------- 638 (748)
..+|..+.+ |+.-.. .... ....+-++.++.||+-.+.........+..||.++.+ |+.-. .-+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 999998775 865432 1111 1223445678888775332222234578899988764 65332 1100
Q ss_pred ----------------CCcc---eeEEEEC---CEEEEEecc----CC------CccccEEEEEeCCCCc--EEEccCCC
Q psy10286 639 ----------------KRCR---LGVAALN---NKIYVCGGY----DG------AIFLQSVEMYDPITDE--WKMIASMN 684 (748)
Q Consensus 639 ----------------~r~~---~~~~~~~---~~i~v~GG~----~~------~~~~~~v~~yd~~~~~--W~~~~~~p 684 (748)
.+.+ -+..+++ +.||+--|. ++ +.+.+++...|++|.+ |.--. .|
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~ 291 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TP 291 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC-CC
Confidence 0100 0111333 457765443 22 2356799999999875 75422 11
Q ss_pred CCCc------ceEEEE--ECCE---EEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 685 VMRS------RVALVA--NMGK---LWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 685 ~~r~------~~~~~~--~~~~---l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..-. ...++- .+++ +++.+..++ .++++|+.+++
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-----~~~vlDr~tG~ 336 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-----FFYVLDRTNGK 336 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-----eEEEEECCCCc
Confidence 1111 111221 2444 777776544 47888888764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.74 E-value=7.8 Score=42.21 Aligned_cols=239 Identities=15% Similarity=0.147 Sum_probs=127.3
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeE-EEEE-CCEEEEEccCCCCCC------CCeEEEEECCCCeEE--EccCCC
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVG-VAVM-KNRLYAFGGYNGSER------LSTVEEFDPVRRVWN--KVSPMC 543 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~~------~~~v~~yd~~t~~W~--~~~~~~ 543 (748)
.-...+..+|..+++...- .++ +..++ ++.. ++..+++...+.... ...++++...+..-. .+-.-+
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d-~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPD-GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp SSEEEEEEEETTTTEEEEE-EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CceEEEEEEECCCCcCcCC-ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 4445788999998854321 112 22222 4444 435555554443322 678999998877543 332222
Q ss_pred CCcc-eeEEE-EECCEEEEEeCCCCCCCCceEEEEeCCCC-----eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcc
Q psy10286 544 FKRS-AVGAA-ALNDKLYVCGGYDGVSSLNTVECYEPDKD-----QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 544 ~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 616 (748)
.... ...+. .-+++..++.-..+.. .+.++..|.... .|..+.+-. .-..+.+...++.+|+....+. .
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a--~ 299 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDA--P 299 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT---T
T ss_pred CCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCC--C
Confidence 2332 22222 2355433333222222 478999999875 788875422 2223344455899998876332 3
Q ss_pred cCeEEEEECCCCc---EE-EccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCC-CCcEEEccCCCCCCcceE
Q psy10286 617 FDSVERYDPKTDE---WT-SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPI-TDEWKMIASMNVMRSRVA 691 (748)
Q Consensus 617 ~~~~~~yd~~~~~---W~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~~~ 691 (748)
...+..++..... |. .+.+-.....--.+...++.|++..=.++ ...+.+||.. +..-..++ +|.. ....
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~~~~~~~~~~-~p~~-g~v~ 374 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLDDGKESREIP-LPEA-GSVS 374 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT-TEEEEEEE-SSSS-SEEE
T ss_pred CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECCCCcEEeeec-CCcc-eEEe
Confidence 4578889888765 66 44333333344556667888887764433 4688999988 33333332 2221 1111
Q ss_pred EEEE---CCEEEE-EeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 692 LVAN---MGKLWA-IGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 692 ~~~~---~~~l~v-~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... .+.+++ +.|+..- .+++.||+.+++.+.+
T Consensus 375 ~~~~~~~~~~~~~~~ss~~~P---~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 375 GVSGDFDSDELRFSYSSFTTP---PTVYRYDLATGELTLL 411 (414)
T ss_dssp EEES-TT-SEEEEEEEETTEE---EEEEEEETTTTCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCC---CEEEEEECCCCCEEEE
Confidence 1111 345544 5555422 4799999999987764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=6.8 Score=41.13 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=104.4
Q ss_pred ceEEEEeCCC-CceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECC-CCeEEEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLV-GRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPV-RRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+..||..+ ++++.+...+.....+.++.- +..+|+.++. ...+..|+.. +++++.+...+.+...+.++
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~ 86 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTFAAESPLPGSPTHIS 86 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEEeeeecCCCCceEEE
Confidence 5577777753 567666554433222333332 4467775431 2456666665 45676554433322222333
Q ss_pred EE-CC-EEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEE-C-CEEEEEccCCCCcccCeEEEEECC
Q psy10286 553 AL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAF-D-SYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 553 ~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
.. ++ .+|+.+- . .+.+..||..++. ...+...+....-|.++.. + +.+|+..-. .+.+..||..
T Consensus 87 ~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~ 156 (330)
T PRK11028 87 TDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLS 156 (330)
T ss_pred ECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----CCEEEEEEEC
Confidence 33 44 5666542 1 2466777765431 1122222222223444444 3 466665432 3578999987
Q ss_pred CCc-EEEcc----CCCCCCcceeEEEE-C-CEEEEEeccCCCccccEEEEEeCC--CCcEEE---ccCCC----CCCcce
Q psy10286 627 TDE-WTSVK----PMLTKRCRLGVAAL-N-NKIYVCGGYDGAIFLQSVEMYDPI--TDEWKM---IASMN----VMRSRV 690 (748)
Q Consensus 627 ~~~-W~~~~----~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~---~~~~p----~~r~~~ 690 (748)
++. ..... ..+....-+.++.. + ..+|+.... .+++.+||.. +.+++. +..+| .+|...
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 632 21110 11111111223333 3 467776432 3567777765 445433 33333 233222
Q ss_pred EEEEE-C-CEEEEEeCCCCCCCCCeEEEEeC--CCCceEecCC
Q psy10286 691 ALVAN-M-GKLWAIGGYDGVSNLPTVEVYDP--STDSWAFVAP 729 (748)
Q Consensus 691 ~~~~~-~-~~l~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~ 729 (748)
.+... + ..+|+... ..+.+.+|+. .+..++.+..
T Consensus 232 ~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 232 DIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred eEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEE
Confidence 23322 3 45676522 1235666655 3445554433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=94.55 E-value=8.6 Score=41.86 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=95.8
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++++|..+++...+...+..... ....-+| .|++....++ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 5799999998876665544322222 1122244 5665543322 257899999988877765432211111 11224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeE-EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGV-AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ +|++.....+ ...++.+|..+..+..+.... ...... ..-+++.++++...+ ....++.+|+.+..++.+
T Consensus 289 g~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 289 GKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVL 361 (417)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEc
Confidence 4 4555433322 247999999988887764321 111222 223555555554432 235799999998877776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
...... .......+++.+++....+.. ..+++++...+
T Consensus 362 ~~~~~~--~~p~~spdg~~l~~~~~~~~~--~~l~~~~~~g~ 399 (417)
T TIGR02800 362 TDTGLD--ESPSFAPNGRMILYATTRGGR--GVLGLVSTDGR 399 (417)
T ss_pred cCCCCC--CCceECCCCCEEEEEEeCCCc--EEEEEEECCCc
Confidence 542211 111223345444443332221 35666665443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=9.6 Score=42.41 Aligned_cols=153 Identities=12% Similarity=0.189 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc-ceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEE-E
Q psy10286 556 DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS-AGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWT-S 632 (748)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 632 (748)
+.+++.||.+ ..+.+||..+.+-.. .+..... -.+++. .++.+++.|+.++ .+..||+.+.+-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEEE
Confidence 4577777755 467888988764221 1111111 112222 2677778887643 5888999876522 1
Q ss_pred ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEE--CCEEEEEeCCCCC
Q psy10286 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVAN--MGKLWAIGGYDGV 708 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 708 (748)
+..-...+........++..++.+|.+.. ....+..||..+.. .... .... .....+..+ ++.++++||..+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 11111111111111123334445554321 12578889986533 1111 1111 111222223 566666776422
Q ss_pred CCCCeEEEEeCCCCceEec
Q psy10286 709 SNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~W~~~ 727 (748)
..|.+||..++.....
T Consensus 282 ---g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 282 ---GNIRCFELMNERLTFC 297 (493)
T ss_pred ---CeEEEEEeeCCceEEE
Confidence 2588888888776543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=94.46 E-value=8.3 Score=41.29 Aligned_cols=225 Identities=13% Similarity=0.141 Sum_probs=111.8
Q ss_pred eEEEEeCCCCc--eEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC--CeEEEccCCCCCcceeEEEE
Q psy10286 478 TVEVFDPLVGR--WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR--RVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 478 ~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~ 553 (748)
.++.+|+.+.+ |.....--..-..-....-+|+||+-.. ++ .+++||..+ ..|+.-.+.. .+..-..+.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~ 151 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVV 151 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEE
Confidence 68888888876 8544321000111111222788776443 22 789999954 4587654432 333334445
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCC--eEEEccCC-CCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKD--QWRIVKSM-QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD-- 628 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-- 628 (748)
.++.+|+.. .-..+++.|..+. .|+.-.+. ...+.....+..++.+|+-... . ...++.+|+.++
T Consensus 152 ~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~---~-~~~~~a~~~~~G~~ 221 (370)
T COG1520 152 GDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG---Y-DGILYALNAEDGTL 221 (370)
T ss_pred cCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC---C-cceEEEEEccCCcE
Confidence 577777653 1246788887755 48755443 2333333333567777765332 1 236899999765
Q ss_pred cEEEccCCCCCCcce--eEEEECCEEEEEeccCCCccccEEEEEeCCCC--cEEEccCCCCC--C-cceEEEEECCEEEE
Q psy10286 629 EWTSVKPMLTKRCRL--GVAALNNKIYVCGGYDGAIFLQSVEMYDPITD--EWKMIASMNVM--R-SRVALVANMGKLWA 701 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~--r-~~~~~~~~~~~l~v 701 (748)
.|+.-...+..+..- ......+.||+-||.-.......+.++|..+. .|+.-...... + .......-+|++|+
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~ 301 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYI 301 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEE
Confidence 487533222222211 12233444444444111111234777776654 47764331111 1 11111123677777
Q ss_pred EeCCCCCCCCCeEEEEeC
Q psy10286 702 IGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~ 719 (748)
............+++++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 302 GFTDNDGRGSGSLYALAD 319 (370)
T ss_pred EEeccccccccceEEEec
Confidence 643322212344566654
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.37 E-value=2.9 Score=43.76 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=81.1
Q ss_pred ceEEEEeCCCC-----eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc-EEEccCCCCCCccee
Q psy10286 571 NTVECYEPDKD-----QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE-WTSVKPMLTKRCRLG 644 (748)
Q Consensus 571 ~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~ 644 (748)
..+..|+.... +++.+.....+-.-.+++.+++++.+..| +.+..|+...++ +...+.+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 66888988885 66666555444445677788999776666 378888888888 888876666667777
Q ss_pred EEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeC
Q psy10286 645 VAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGG 704 (748)
Q Consensus 645 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG 704 (748)
+.+.++.|++-.-..+ -.+..|+....+-..++.-..++...++..+ ++. .+++|
T Consensus 135 l~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEE
T ss_pred EeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEE
Confidence 7788887765443322 2456778877777777766667776666666 655 44443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2075|consensus | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.018 Score=60.14 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=49.3
Q ss_pred hHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcc
Q psy10286 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVL 275 (748)
Q Consensus 221 ~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~ 275 (748)
..|..+++|+|++.+.+..+|+..++.+|+.|.++.|.+.|.+||.+++...|.+
T Consensus 169 aaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf 223 (521)
T KOG2075|consen 169 AAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAF 223 (521)
T ss_pred hHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHH
Confidence 4566699999999999999999999999999999999999999999887766533
|
|
| >smart00225 BTB Broad-Complex, Tramtrack and Bric a brac | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.041 Score=44.86 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHH
Q psy10286 218 FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACA 262 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~ 262 (748)
.+...++.+++|+|++.+.+...++.+++..|++|+++.+.+.|+
T Consensus 46 ~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 46 VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 355678889999999999999999999999999999999998874
|
Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. |
| >KOG3840|consensus | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.55 Score=46.22 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=56.6
Q ss_pred CcccEEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeee
Q psy10286 73 KLCDVTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREIT 151 (748)
Q Consensus 73 ~~~Dv~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 151 (748)
.---++..+++..|...+.+|.+.- .-.-.||.++..-.. ..+..+.+
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~-------------------------------pNErgEye 142 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVS-------------------------------PNERDEFE 142 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccC-------------------------------CCcCCcee
Confidence 3445788889999999999997642 122355554322111 12223444
Q ss_pred e-cCCCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHh
Q psy10286 152 M-QGIDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFL 189 (748)
Q Consensus 152 ~-~~~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l 189 (748)
+ ++++..+|+++|+|--||.+..... .|.+|-+|+++|
T Consensus 143 VAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYL 182 (438)
T KOG3840|consen 143 VADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYL 182 (438)
T ss_pred hhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceE
Confidence 4 6899999999999999999987665 566666665555
|
|
| >PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.8 Score=40.84 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeC-----CCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEP-----DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
++++|++.|..+. .++.|.- ..+.+...-.+|.+-.+.+.++++|.+|.--.. .+.+.+||..++.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~-----s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN-----SRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC-----CceEEEEECcCCc
Confidence 4578888886543 5555532 233344444577778888889999998876543 5789999999987
Q ss_pred EEEccCCCCCCc---------c---eeEEEECCEEEEEeccCCCccccEEEEEeCCCC----cEEEccCCCCCCcceEEE
Q psy10286 630 WTSVKPMLTKRC---------R---LGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD----EWKMIASMNVMRSRVALV 693 (748)
Q Consensus 630 W~~~~~~p~~r~---------~---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~ 693 (748)
-.....+|.+.. . .-.++-++-|+|+=....+...-.+-..|+.+. +|.. ..+. +....+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k-~~~~naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPK-RSAGNAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCc-hhhccee
Confidence 553223332222 1 223333556777754433322234556777654 4553 2332 2233356
Q ss_pred EECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 694 ANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 694 ~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
.+-|.||++...+... ..=.+.||..+++=..
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED 209 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence 6789999998765432 2234789999887554
|
Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.16 E-value=6.9 Score=39.16 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=89.0
Q ss_pred EccCCCC--CcceeEEEEECCEEEEEeCCC-------CC----------CCCceEEEEeCCCCe----EEEccCCCCCCc
Q psy10286 538 KVSPMCF--KRSAVGAAALNDKLYVCGGYD-------GV----------SSLNTVECYEPDKDQ----WRIVKSMQKHRS 594 (748)
Q Consensus 538 ~~~~~~~--~r~~~~~~~~~~~iyv~GG~~-------~~----------~~~~~~~~yd~~~~~----W~~~~~~~~~r~ 594 (748)
.+.+.|. +-.+-++..+++.|| |||+- +. .-.+-+..||.++++ |+.--.-+ +.
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~~ 103 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--TK 103 (339)
T ss_pred eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--cc
Confidence 4454443 334456666788888 68862 10 113567889998887 54433222 22
Q ss_pred ceEEE---E---ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEE
Q psy10286 595 AGGVI---A---FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 595 ~~~~~---~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 668 (748)
..+=+ . +++++++.-+ +|. ..-.+|..|..+..-+.+..-|.. -++..++..++-+ .+.......+.
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~ 176 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKGVSGIH 176 (339)
T ss_pred cccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccCCceEE
Confidence 22211 1 3678887644 222 233689999999988887665544 3444555544433 33334578999
Q ss_pred EEeCCCCcE--EEccCC------C-CCCcceEEEEECCEEEEE
Q psy10286 669 MYDPITDEW--KMIASM------N-VMRSRVALVANMGKLWAI 702 (748)
Q Consensus 669 ~yd~~~~~W--~~~~~~------p-~~r~~~~~~~~~~~l~v~ 702 (748)
+||..+++| ...+.- + ..|..-.++...+++|.|
T Consensus 177 ~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 177 CLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 999999999 333210 1 112334456667777776
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=94.10 E-value=8.2 Score=41.01 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=106.5
Q ss_pred cccccccCCCccceEEEEeCCCCce-EEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC
Q psy10286 465 TKSCLTKAGDSLSTVEVFDPLVGRW-QMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC 543 (748)
Q Consensus 465 ~~~~~~~~g~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~ 543 (748)
.++.+...|+..--+..||..+..- ..+..-..|-..--....++.+++.|+-+ .-+..+|..+.. . ...+.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~-v-~~~l~ 150 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVKYWDLSTAY-V-QAELS 150 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-----ceEEEEEcCCcE-E-EEEec
Confidence 3455666667777889999544211 11111111212122234588999999843 223444555443 1 11211
Q ss_pred C---CcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCccc
Q psy10286 544 F---KRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIF 617 (748)
Q Consensus 544 ~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 617 (748)
. -...-++...+++|.+.||+++ .+-.||..+. .|.. .+.....--.+..+ ++.|-..||
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG------- 216 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGG------- 216 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------
Confidence 1 1111233334789999999885 4566777766 3432 22211111122223 345555555
Q ss_pred CeEEEEECCCCcEEEccCCCCCCcce----eEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceE
Q psy10286 618 DSVERYDPKTDEWTSVKPMLTKRCRL----GVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA 691 (748)
Q Consensus 618 ~~~~~yd~~~~~W~~~~~~p~~r~~~----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (748)
+.+-++|..++.= ++..+.+| ++-.+ ++.-++.||.++ .+-+|| +..|+.+..+..+-.--+
T Consensus 217 n~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~~Kvv~s~~~~~pvLs 284 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTNYKVVHSWKYPGPVLS 284 (487)
T ss_pred CeEEEEEecCCce-----ehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccceEEEEeeecccceee
Confidence 4677777764432 12222211 11111 446677777653 578898 556777765544333333
Q ss_pred EEEE-CCEEEEEeCCCC
Q psy10286 692 LVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 692 ~~~~-~~~l~v~GG~~~ 707 (748)
+.+. +++-.|+|+.++
T Consensus 285 iavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEecCCCceEEEecccc
Confidence 3333 778888887664
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.98 E-value=3.6 Score=43.05 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=81.3
Q ss_pred CeEEEEECCCC-----eEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe-EEEccCCCCCCcceE
Q psy10286 524 STVEEFDPVRR-----VWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVKSMQKHRSAGG 597 (748)
Q Consensus 524 ~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~ 597 (748)
..+..|+.... +++.+.....+-.-.+++.+++++.+..| +.+..|+...+. +...+.+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 56888988884 66666544444445677778999777666 578888888888 988887777667777
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEe
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCG 656 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G 656 (748)
+.+.++.|++---..+ -.+..|+....+-..++.-..++...++..+ ++..++++
T Consensus 135 l~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 8888887775433322 2456778866667777765566776666666 65544443
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=12 Score=40.99 Aligned_cols=202 Identities=11% Similarity=-0.021 Sum_probs=99.7
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC
Q psy10286 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 511 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
.|+....+ ......+|..|.....=..+..-+. ....-...-+|+.+++..... ....++.+|..+++-+.+...+
T Consensus 167 ayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~~-~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~ 242 (429)
T PRK03629 167 AYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFP 242 (429)
T ss_pred EEEEeeCC-CCcceeEEEEcCCCCCCEEeecCCC-ceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCC
Confidence 45554322 2345678888865432122211111 111112222554333322211 1257889999888766665544
Q ss_pred CCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCE-EEEEeccCCCccccE
Q psy10286 591 KHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNK-IYVCGGYDGAIFLQS 666 (748)
Q Consensus 591 ~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~ 666 (748)
..-.. ....-+| +|++....++ ..+++.+|..+.+.+.+...... .....+ +++ |+......+ ...
T Consensus 243 ~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~---~~~~~wSPDG~~I~f~s~~~g---~~~ 312 (429)
T PRK03629 243 RHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSN---NTEPTWFPDSQNLAYTSDQAG---RPQ 312 (429)
T ss_pred CCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCC---cCceEECCCCCEEEEEeCCCC---Cce
Confidence 32111 1122244 5655533322 24699999999888776543221 122222 444 444332222 258
Q ss_pred EEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 667 VEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 667 v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
+|.+|..+.....+..... ........-+|+.+++.+..+. ...++++|+.++.++.+..
T Consensus 313 Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 313 VYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred EEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCC
Confidence 9999998877766633211 1111222234544444332222 2468999999998887653
|
|
| >smart00284 OLF Olfactomedin-like domains | Back alignment and domain information |
|---|
Probab=93.85 E-value=7.6 Score=38.57 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=90.0
Q ss_pred CceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCc------------ceeEEEEE
Q psy10286 487 GRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKR------------SAVGAAAL 554 (748)
Q Consensus 487 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r------------~~~~~~~~ 554 (748)
+++.+.-.+|.+..+-+.++.+|.+|.--. ....+-+||..+++-.....+|.+. ...-.++-
T Consensus 62 ~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvD 136 (255)
T smart00284 62 GKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVD 136 (255)
T ss_pred cCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEc
Confidence 344333456777888889999999998543 2467999999998765444444321 11234444
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCC----eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKD----QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.+-++|+=........--+-..||.+- +|.. ..+.+ ....+..+=|.+|++-... .....-.+.||+.+++=
T Consensus 137 E~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~-sa~naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~ 212 (255)
T smart00284 137 ENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR-SASNAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc-cccccEEEeeEEEEEccCC-CCCcEEEEEEECCCCcc
Confidence 444555522221111123345666654 4554 22222 2223444568889886421 12234478899998764
Q ss_pred EEcc-CCCCCCcceeEEEE---CCEEEEEe
Q psy10286 631 TSVK-PMLTKRCRLGVAAL---NNKIYVCG 656 (748)
Q Consensus 631 ~~~~-~~p~~r~~~~~~~~---~~~i~v~G 656 (748)
..+. +++.+...+++..+ +.+||+.-
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 4332 34444455666655 46788774
|
|
| >KOG1665|consensus | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.29 Score=45.97 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=68.0
Q ss_pred cEEEEECCeEEeeeeeeeeccCH--HHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeec
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATIP--YFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQ 153 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S~--~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 153 (748)
=|.+.++|+.|.--+--|-.|-| ...+||.+.-.-.. +..+. ..+-
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~-------------------------------~d~kG-a~lI 57 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQ-------------------------------EDKKG-AVLI 57 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccc-------------------------------cccCc-eEEE
Confidence 46788899998877776666644 67788876321111 01111 1114
Q ss_pred CCCHHHHHHHHHhhhceeEEeec-hhHHHHHHHHHHhcchhHHHHHHH
Q psy10286 154 GIDAVAMEALINFVYSGRVTIHS-QNVQSLMVVASFLQMQKVADACAD 200 (748)
Q Consensus 154 ~~~~~~~~~~l~flYtg~~~i~~-~~v~~ll~~A~~l~i~~l~~~c~~ 200 (748)
+=+|.-|+.+|.|+-.|.+.... -++.++++.|.+|||-.|++..++
T Consensus 58 DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 58 DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 67889999999999999986544 589999999999999999998877
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=93.52 E-value=24 Score=43.37 Aligned_cols=233 Identities=17% Similarity=0.153 Sum_probs=125.6
Q ss_pred ccccccCCCccceEEEEeCCCCceEEccCCC----------cc--cceeEEEEE--CCEEEEEccCCCCCCCCeEEEEEC
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS----------ML--RSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDP 531 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~----------~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 531 (748)
++.++......+.+..+|+..+.-..++... .. ..-+++++. ++.|||.-..+ +.+.++|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~Ir~id~ 653 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HALREIDF 653 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceEEEEec
Confidence 3445555555567888887654322332210 01 112455554 56789875422 46888888
Q ss_pred CCCeEEEccCC-------CC--------CcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC----
Q psy10286 532 VRRVWNKVSPM-------CF--------KRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ---- 590 (748)
Q Consensus 532 ~t~~W~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---- 590 (748)
.++.=+.++.- .. -..-+.+++. ++.+||.... .+.++.||+.++.......-.
T Consensus 654 ~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 654 VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecCCcccc
Confidence 87765443210 00 0112334443 6789987542 257889998877654432100
Q ss_pred ---------CCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccC----CCC----------------C
Q psy10286 591 ---------KHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP----MLT----------------K 639 (748)
Q Consensus 591 ---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~----------------~ 639 (748)
....-.+++.. ++.||+.... .+.+.+||+.++..+.+.. .+. -
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 00111223333 3469988765 3579999998766432210 000 0
Q ss_pred CcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC----------CC--cceEEEE-ECCEEEEEeCC
Q psy10286 640 RCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV----------MR--SRVALVA-NMGKLWAIGGY 705 (748)
Q Consensus 640 r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~r--~~~~~~~-~~~~l~v~GG~ 705 (748)
..-.+++. -+|.+||....+ +.|.+||+.++....+..... +. .-++++. -+|++||.-..
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 01123333 257788887543 579999999888776532211 11 1123333 36889998543
Q ss_pred CCCCCCCeEEEEeCCCCc
Q psy10286 706 DGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~ 723 (748)
.+.|.++|+.+++
T Consensus 879 -----Nn~Irvid~~~~~ 891 (1057)
T PLN02919 879 -----NSLIRYLDLNKGE 891 (1057)
T ss_pred -----CCEEEEEECCCCc
Confidence 2478899988865
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=14 Score=40.45 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=98.5
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|..+++-+.+...+..-.. ....-+| +|++.....+ ...++.+|..+++.+.+..-+..-. .....-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcC-ceEECCC
Confidence 5789999988876666554432111 1222255 5555433222 2468999999888777654322111 1111124
Q ss_pred CE-EEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 SY-VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
|+ |+......+ ...+|.+|+.+.....+..... ........-+|+ |+..+..++ ...++.+|+.++.++.+
T Consensus 298 G~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 298 SQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVL 370 (429)
T ss_pred CCEEEEEeCCCC---CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEe
Confidence 44 444332222 2579999998877766632211 111112222444 444443322 24789999999998887
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... ........-+|+.+++.+.++. ...+++.+.....=+.+
T Consensus 371 t~~~--~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 371 TDTF--LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCCC--CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 6421 1111222346776666665433 23467777755543444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=15 Score=40.32 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=109.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
..+|..|........+...+.+-...+. .-+++..++..... ....++.+|..+++=..+...+.. .......-+|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGS-NSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCC-ccceEECCCC
Confidence 5677777755444444322221111111 12444333333221 234699999988765555443321 1112222255
Q ss_pred -EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 557 -KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 557 -~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
+|++....++ ..++|.+|..++..+.+..-.. ........-+| .|+......+ ...+|.+|..+...+.+.
T Consensus 252 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 252 RTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CEEEEEEccCC---CceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEe
Confidence 5554444332 2578999988777666543221 11111222244 4554432222 247899998887776664
Q ss_pred CCCCCCccee-EEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCC
Q psy10286 635 PMLTKRCRLG-VAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP 712 (748)
Q Consensus 635 ~~p~~r~~~~-~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 712 (748)
.. ...... ...-+| .|+...+.++ ...++.+|..+.+...+..-. ....-...-+++.+++....+. ..
T Consensus 325 ~~--g~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g--~~ 395 (427)
T PRK02889 325 FT--GSYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQQGG--RS 395 (427)
T ss_pred cC--CCCcCceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEecCC--CE
Confidence 21 111111 222244 4544433222 237999999988877764321 1111122235666665543322 23
Q ss_pred eEEEEeCCC
Q psy10286 713 TVEVYDPST 721 (748)
Q Consensus 713 ~v~~yd~~~ 721 (748)
.+++++...
T Consensus 396 ~l~~~~~~g 404 (427)
T PRK02889 396 VLAAVSSDG 404 (427)
T ss_pred EEEEEECCC
Confidence 577777744
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=92.70 E-value=15 Score=38.79 Aligned_cols=233 Identities=18% Similarity=0.162 Sum_probs=114.5
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEE--ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAV--MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
.++.||..++++..+......-.-..++. -++.||+..........-..+..+..+.+.+.+...+..-...+-..+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe
Confidence 45667778888877654322211112222 367899886543111222344455555788887665532233233333
Q ss_pred --CCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEc---------cCCC---CCCcceEEEEE--CCEEEEEccCCCCccc
Q psy10286 555 --NDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIV---------KSMQ---KHRSAGGVIAF--DSYVYALGGHDGLSIF 617 (748)
Q Consensus 555 --~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~---------~~~~---~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 617 (748)
++.+|+.-- . -..+..|+...+ .-... .+-+ ..-.-|.+... ++.+|+..-. .
T Consensus 96 ~~g~~l~vany-~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----~ 165 (345)
T PF10282_consen 96 PDGRFLYVANY-G----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----A 165 (345)
T ss_dssp TTSSEEEEEET-T----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----T
T ss_pred cCCCEEEEEEc-c----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----C
Confidence 446666532 1 246777777664 21111 1111 11223444444 3467776422 3
Q ss_pred CeEEEEECCCCc--EEEccC--CCCCCc-ceeEEEE-CCEEEEEeccCCCccccEEEEEeC--CCCcEEEc---cCCCCC
Q psy10286 618 DSVERYDPKTDE--WTSVKP--MLTKRC-RLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDP--ITDEWKMI---ASMNVM 686 (748)
Q Consensus 618 ~~~~~yd~~~~~--W~~~~~--~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~---~~~p~~ 686 (748)
+.++.|+..... .+.... .|..-. .|.+..- +..+||+...+ +.|.+|+. .+..|+.+ +.+|..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeecccc
Confidence 578888877665 655332 222211 1233222 35799987543 45555544 46677665 334332
Q ss_pred ---C-cceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeC--CCCceEecCCC
Q psy10286 687 ---R-SRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDP--STDSWAFVAPM 730 (748)
Q Consensus 687 ---r-~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~ 730 (748)
. ..+.+.+. +..|||--.. .++|.+|+. ++++.+.+...
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEE
Confidence 2 23333443 4567776431 356777775 55566554443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=28 Score=41.64 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=89.5
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+...+.|+.+ ..+..||..+++-...-.. ....-.+++.. ++.+++.||.+ ..+..||..+..-.
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~-- 611 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSI-- 611 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEE--
Confidence 4555666643 3688889887653221111 11122233332 56778888865 35778887654321
Q ss_pred cCCCCCCcceEEEE---ECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEECCEEEEEeccCCC
Q psy10286 587 KSMQKHRSAGGVIA---FDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661 (748)
Q Consensus 587 ~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 661 (748)
..+... .....+. .++..+++|+.++ .+..||..+.. ...+..- ...-..+...++..++.||.+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~~~~~lvs~s~D-- 681 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIGH--SKTVSYVRFVDSSTLVSSSTD-- 681 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecCC--CCCEEEEEEeCCCEEEEEECC--
Confidence 111111 1112222 2467788887643 68899987543 2222110 011112222356667777654
Q ss_pred ccccEEEEEeCCCC----cEEEccCCCCCCc--ceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 662 IFLQSVEMYDPITD----EWKMIASMNVMRS--RVALVANMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 662 ~~~~~v~~yd~~~~----~W~~~~~~p~~r~--~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
..+.+||.... .|..+..+..... .......++.+++.|+.++ .+.+|+...
T Consensus 682 ---~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 682 ---NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred ---CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----EEEEEECCC
Confidence 35777887542 2333322211111 1122223567777777543 577777654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=92.07 E-value=38 Score=41.79 Aligned_cols=191 Identities=15% Similarity=0.152 Sum_probs=103.9
Q ss_pred ccccccCCCccceEEEEeCCCCceEEccCCC---------------cccceeEEEEE--CCEEEEEccCCCCCCCCeEEE
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS---------------MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEE 528 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~---------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 528 (748)
++.+++.....+.+..+|+.++.-..+..-. .-..-+.+++. ++.+||... ..+.+++
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-----~~~~I~v 709 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-----GQHQIWE 709 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-----CCCeEEE
Confidence 3445554444456788888776654432100 00111234443 678998754 2356899
Q ss_pred EECCCCeEEEccCC----------C---CCcceeEEEEE-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC----C
Q psy10286 529 FDPVRRVWNKVSPM----------C---FKRSAVGAAAL-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS----M 589 (748)
Q Consensus 529 yd~~t~~W~~~~~~----------~---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~ 589 (748)
||+.++.......- . .-..-.+++.. + +.|||.... .+.+.+||+.++....+.. .
T Consensus 710 ~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred EECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEeccccc
Confidence 99887765433210 0 00112233333 3 469988653 2678999988765332210 0
Q ss_pred CC--------------CCcc--eEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCC------------C
Q psy10286 590 QK--------------HRSA--GGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK------------R 640 (748)
Q Consensus 590 ~~--------------~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------------r 640 (748)
+. .... .++++ -+|.+||.... .+.+.+||+.++....+...... .
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 00 0011 12332 36789988765 35799999998887766432110 0
Q ss_pred cceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 641 CRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 641 ~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
.-+++++- +|++||....+ +.|.++|..+.+
T Consensus 860 ~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred CceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 11333332 67899987543 578889987765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=22 Score=38.93 Aligned_cols=191 Identities=10% Similarity=-0.003 Sum_probs=92.7
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
...+|..|........+..-...-.. -...-+|+-+++..... ....++.+|..+++=..+...+... ......-+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPD 250 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPD 250 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCc-cceEECCC
Confidence 35688888765443333221111111 11222554444433221 1256899999887655554333211 11122224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
| +|++....++ ..++|.+|..+.....+..-...... ....-+|+ |+......+ ...+|.+|..+.....+
T Consensus 251 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 251 GRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDTE-PFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRV 323 (427)
T ss_pred CCEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCcC-eEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEE
Confidence 4 5555444333 35799999888776666432211111 12222444 544432222 25789999887777666
Q ss_pred cCCCCCCcceE-EEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 681 ASMNVMRSRVA-LVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 681 ~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
... ...... ...-+|+.+++....+. ...++++|..++..+.+.
T Consensus 324 t~~--g~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 324 TFT--GSYNTSPRISPDGKLLAYISRVGG--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ecC--CCCcCceEECCCCCEEEEEEccCC--cEEEEEEECCCCCeEEcc
Confidence 421 111111 12224443334332221 136899999888776553
|
|
| >PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.42 Score=36.07 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=40.8
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+. +|+.|.+.+.++. .|..++.||.....+.. .+ .++++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~I----------------------------------pl~~v 45 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PI----------------------------------PLPNV 45 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EE----------------------------------EETTS
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--cc----------------------------------ccCcc
Confidence 55554 7889999888765 69999999976322221 34 44899
Q ss_pred CHHHHHHHHHhhh
Q psy10286 156 DAVAMEALINFVY 168 (748)
Q Consensus 156 ~~~~~~~~l~flY 168 (748)
+.+.++.+++|++
T Consensus 46 ~~~~L~kViewc~ 58 (62)
T PF03931_consen 46 SSRILKKVIEWCE 58 (62)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A .... |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=91.78 E-value=15 Score=36.77 Aligned_cols=156 Identities=16% Similarity=0.258 Sum_probs=89.6
Q ss_pred EEccCCCcc--cceeEEEEECCEEEEEccCC-------C--C--------CCCCeEEEEECCCCe----EEEccCCCCCc
Q psy10286 490 QMAEAMSML--RSRVGVAVMKNRLYAFGGYN-------G--S--------ERLSTVEEFDPVRRV----WNKVSPMCFKR 546 (748)
Q Consensus 490 ~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~-------~--~--------~~~~~v~~yd~~t~~----W~~~~~~~~~r 546 (748)
+.+++.|.. -.+.++..+++.||+ ||+- + . +..+.|..||..+++ |++--. .++
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih--~~~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH--DKT 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC--Ccc
Confidence 445555533 456677778988884 8763 1 0 123568899988886 655322 223
Q ss_pred ceeEEE--E----ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 547 SAVGAA--A----LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 547 ~~~~~~--~----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
...+=+ . +++++|+.-+ +|... -.+|..|.++..=+.+..-|.+ -.+.+++..+|-+ .+...-.+.+
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~-DGh~n-LGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i 175 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARA-DGHAN-LGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKGVSGI 175 (339)
T ss_pred ccccchhheeeCCCcCEEEEEec-CCcce-eeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccCCceE
Confidence 222222 1 1567776543 33332 3688889888888877666554 2444444444433 3233346789
Q ss_pred EEEECCCCcE--EEccC-------CCCCCcceeEEEECCEEEEE
Q psy10286 621 ERYDPKTDEW--TSVKP-------MLTKRCRLGVAALNNKIYVC 655 (748)
Q Consensus 621 ~~yd~~~~~W--~~~~~-------~p~~r~~~~~~~~~~~i~v~ 655 (748)
.+||+.+++| +..+. ....|..-.++...+++|.+
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 9999999999 43321 11223334455666666655
|
|
| >PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes | Back alignment and domain information |
|---|
Probab=91.75 E-value=14 Score=36.14 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=80.2
Q ss_pred ceeEEEEECCEEEEEccCC--CCCCCCeEEEEE---CCCCeEEE--ccCCCC-------CcceeEEEEECCEEEEEeCCC
Q psy10286 500 SRVGVAVMKNRLYAFGGYN--GSERLSTVEEFD---PVRRVWNK--VSPMCF-------KRSAVGAAALNDKLYVCGGYD 565 (748)
Q Consensus 500 ~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~ 565 (748)
..+++.+++|++|.+=-.. .+..+...+.|| ...+.|+. ++..|. .-.-|+.+.+++.-|++|=.+
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn 155 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN 155 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc
Confidence 4467788999999764321 333444556665 34677864 344443 446688889988888988655
Q ss_pred CCCCCceE--EEEeC-----CCCeEEEccC-CCCCCcceEEEEECCEEEEEc-cCCCCcccCeEEEEECCCCcEEEcc-C
Q psy10286 566 GVSSLNTV--ECYEP-----DKDQWRIVKS-MQKHRSAGGVIAFDSYVYALG-GHDGLSIFDSVERYDPKTDEWTSVK-P 635 (748)
Q Consensus 566 ~~~~~~~~--~~yd~-----~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~-~ 635 (748)
|...-..+ ..|.. ..-.=+.++. ....-...++-.++|.+|+.- |......-+.+.+-+.....|+.+. +
T Consensus 156 GD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp 235 (367)
T PF12217_consen 156 GDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP 235 (367)
T ss_dssp -SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T
T ss_pred CCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc
Confidence 43322222 22211 1111122221 222223345567899999986 4444444567888888888999875 2
Q ss_pred CCCCCcceeEEEECCEEEEEecc
Q psy10286 636 MLTKRCRLGVAALNNKIYVCGGY 658 (748)
Q Consensus 636 ~p~~r~~~~~~~~~~~i~v~GG~ 658 (748)
-..-....-.+.+++.||++|..
T Consensus 236 ~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 236 NNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp T---SS---EEEETTEEEEEEE-
T ss_pred ccccccCCCceeeCCEEEEEecc
Confidence 22233344457789999999963
|
This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=91.58 E-value=20 Score=37.71 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=42.7
Q ss_pred CCEEEEEe--ccCC--CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-C-C-EEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 649 NNKIYVCG--GYDG--AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-M-G-KLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 649 ~~~i~v~G--G~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~-~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
++++||.. |-.+ ....+.++++|.++ ++.+...+..+.-++++.. + . .+|+.-|. .+++.++|..+
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~-----s~~VsViD~~t 331 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEIDSINVSQDAKPLLYALSTG-----DKTLYIFDAET 331 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCceeeEEECCCCCeEEEEeCCC-----CCcEEEEECcC
Confidence 67899842 2111 12347899999765 5666666666666665554 3 4 56666542 34699999888
Q ss_pred Cc
Q psy10286 722 DS 723 (748)
Q Consensus 722 ~~ 723 (748)
.+
T Consensus 332 ~k 333 (352)
T TIGR02658 332 GK 333 (352)
T ss_pred Ce
Confidence 74
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=91.46 E-value=6 Score=40.87 Aligned_cols=234 Identities=16% Similarity=0.143 Sum_probs=104.3
Q ss_pred CCccceEEEEeCCCCceEEccCCCc-cc-------ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-
Q psy10286 473 GDSLSTVEVFDPLVGRWQMAEAMSM-LR-------SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC- 543 (748)
Q Consensus 473 g~~~~~~~~yd~~~~~W~~~~~~~~-~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~- 543 (748)
|...+-+..||+.|-+-+.--.+|. +| ...++..-+..+||.- -....+|-+.|...++-...-+.|
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeeeecCCC
Confidence 4667789999999985432222222 13 2223222345677652 234568899999988764432222
Q ss_pred ------CCcceeEEEEECCEEEEEe-CCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcc
Q psy10286 544 ------FKRSAVGAAALNDKLYVCG-GYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 544 ------~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 616 (748)
.+-.++++.+-+|.+..+. +.+|.........|++..+-.-.-+..........-..++|.+|-+.=.....
T Consensus 139 C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~- 217 (342)
T PF06433_consen 139 CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA- 217 (342)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-
T ss_pred EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-
Confidence 2222344444455444332 22222222233466665543211111111111122245677777633211111
Q ss_pred cCeEEEEECCC-----CcEEEccCCCCCCcceeEEEECCEEEEEec--cCC--CccccEEEEEeCCCCcEEEccCCCCCC
Q psy10286 617 FDSVERYDPKT-----DEWTSVKPMLTKRCRLGVAALNNKIYVCGG--YDG--AIFLQSVEMYDPITDEWKMIASMNVMR 687 (748)
Q Consensus 617 ~~~~~~yd~~~-----~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG--~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (748)
.-...+...+ ..|..- +....+.-.-.+++||.-- ..+ ...-..||+||+++.+=. ..++...
T Consensus 218 -~~~~~~~~~t~~e~~~~WrPG-----G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv--~Ri~l~~ 289 (342)
T PF06433_consen 218 -KFGKPWSLLTDAEKADGWRPG-----GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV--ARIPLEH 289 (342)
T ss_dssp -EEEEEEESS-HHHHHTTEEE------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE--EEEEEEE
T ss_pred -cccCcccccCccccccCcCCc-----ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE--EEEeCCC
Confidence 1112222211 345422 1111111122678888631 111 123468999999998532 2222222
Q ss_pred cceEEEEE-CCE--EEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 688 SRVALVAN-MGK--LWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 688 ~~~~~~~~-~~~--l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
..-++.+. +++ ||.+-+. ..++.+||..+++-
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~-----~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAG-----DGTLDVYDAATGKL 324 (342)
T ss_dssp EESEEEEESSSS-EEEEEETT-----TTEEEEEETTT--E
T ss_pred ccceEEEccCCCcEEEEEcCC-----CCeEEEEeCcCCcE
Confidence 12233333 444 5544231 14799999999854
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=91.35 E-value=6.7 Score=44.14 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=68.7
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
-++.++.||+.... ..++.+|..+.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 44568999986442 368889988764 8765433211 112335667888887433 2369
Q ss_pred EEEECCCCc--EEEcc-CCCCC-CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEE
Q psy10286 621 ERYDPKTDE--WTSVK-PMLTK-RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 621 ~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (748)
+++|.++.+ |+.-. ..... ....+-++.+++||+-.+.........+..||.++.+ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999998775 76532 11111 1223345668887764322222234578899988864 764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.09 E-value=17 Score=36.02 Aligned_cols=224 Identities=14% Similarity=0.190 Sum_probs=120.0
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC-CCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~ 553 (748)
...+=..||.+++-...+ ++..-.-|.+++- ++..++.-+ . ..+-++|+++..-++.+- ...+-.+.-.++
T Consensus 82 ~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~-----~-~aI~R~dpkt~evt~f~lp~~~a~~nlet~v 154 (353)
T COG4257 82 TGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDT-----G-LAIGRLDPKTLEVTRFPLPLEHADANLETAV 154 (353)
T ss_pred cccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecC-----c-ceeEEecCcccceEEeecccccCCCccccee
Confidence 345667888888876654 3333333444443 555665533 1 268889998876655431 222233334445
Q ss_pred E--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 554 L--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+ .|.++..|-..-.+ +.||.++.-+..+....+--..-++.-+|.+|+.--. -+.+-+.||.+..=+
T Consensus 155 fD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----gnaiaridp~~~~ae 223 (353)
T COG4257 155 FDPWGNLWFTGQIGAYG------RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----GNAIARIDPFAGHAE 223 (353)
T ss_pred eCCCccEEEeeccccce------ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----ccceEEcccccCCcc
Confidence 5 45777766432121 4566665544432221112222334458888876322 135777888777444
Q ss_pred EccCCCCC-CcceeE--EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-CCCcceEEEEECCEEEEEeCCCC
Q psy10286 632 SVKPMLTK-RCRLGV--AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 632 ~~~~~p~~-r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
.++. |.+ .....- +.-.+++++.- .....++.|||....|.+.+-.- .+|....-+--.|++++---
T Consensus 224 v~p~-P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea--- 294 (353)
T COG4257 224 VVPQ-PNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA--- 294 (353)
T ss_pred eecC-CCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc---
Confidence 4432 222 111111 11135667652 11357899999999999864221 23333333333577776311
Q ss_pred CCCCCeEEEEeCCCCceEecC
Q psy10286 708 VSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~ 728 (748)
..+.+.+|||++-+.+.++
T Consensus 295 --~agai~rfdpeta~ftv~p 313 (353)
T COG4257 295 --DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred --ccCceeecCcccceEEEec
Confidence 2356899999999988763
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.09 E-value=23 Score=37.33 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCceEEccCCCcccceeEEEEEC-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccC-CCCCcc-eeEEEEECCEEEEEe
Q psy10286 486 VGRWQMAEAMSMLRSRVGVAVMK-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRS-AVGAAALNDKLYVCG 562 (748)
Q Consensus 486 ~~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~-~~~~~~~~~~iyv~G 562 (748)
...|++.. ++......+++..+ +..|++|-. ..+++=.-.-.+|+.+.. ++.... ..+....++..|+.|
T Consensus 34 ~~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G 106 (334)
T PRK13684 34 SSPWQVID-LPTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVG 106 (334)
T ss_pred CCCcEEEe-cCCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeC
Confidence 34687775 44444555566654 467777732 234433334467988643 332222 223333355667665
Q ss_pred CCCCCCCCceEEEEeCCCCeEEEccCC-CCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC
Q psy10286 563 GYDGVSSLNTVECYEPDKDQWRIVKSM-QKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640 (748)
Q Consensus 563 G~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 640 (748)
.. ..+++=+-.-.+|+.+... ..+......... ++.+|+.|.. ..+++-+-.-.+|+.+.... ..
T Consensus 107 ~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-~g 173 (334)
T PRK13684 107 QP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVEDA-AG 173 (334)
T ss_pred CC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCCC-cc
Confidence 32 2233333334589988532 122222233333 4456666543 35666666778999886433 23
Q ss_pred cceeEEEECCEEEEEeccCCCccccEEEE-EeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeC
Q psy10286 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEM-YDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGG 704 (748)
Q Consensus 641 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG 704 (748)
..+.+....+..+++.|..+ .++. .|....+|+.+.. +..+.-.+++. -+++++++|.
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred eEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEec
Confidence 34455544444444444332 2333 2444567998854 33444444444 3678888875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=44 Score=40.03 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=82.5
Q ss_pred ceEEEEeCCCCceEEccCCC-cccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeE-EEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMS-MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVW-NKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~ 552 (748)
..+..||..+++... .+. ....-.+++.. ++.+++.||.+ ..+..||..+..- ..+. ......++.
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~---~~~~v~~v~ 624 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSIGTIK---TKANICCVQ 624 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEEEEEe---cCCCeEEEE
Confidence 467778877654322 121 11112233332 56777888754 3578888876532 1211 111111222
Q ss_pred E--ECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 553 A--LNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 553 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
. -++..++.|+.+ ..+..||..+.. ...... ....-..+...++..++.||.++ .+-.||....
T Consensus 625 ~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~~ 692 (793)
T PLN00181 625 FPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDLSMS 692 (793)
T ss_pred EeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeCCCC
Confidence 2 257778888755 468889886542 111111 11111122233566666776643 4677776542
Q ss_pred ----cEEEccCCCCC--CcceeEEEECCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 629 ----EWTSVKPMLTK--RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 629 ----~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
.|..+..+... .........++..++.|+.+ ..+.+|+...
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D-----~~v~iw~~~~ 739 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET-----NEVFVYHKAF 739 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC-----CEEEEEECCC
Confidence 23333222111 11112222356677777754 3577777544
|
|
| >KOG2715|consensus | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.73 Score=41.22 Aligned_cols=101 Identities=12% Similarity=0.186 Sum_probs=74.3
Q ss_pred ccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 75 CDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 75 ~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
.=|.|.|+|..|.--|.-|+--+.-|..-|-..-.+.... +..+--++-+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sd------------------------------rDetGAYlID 70 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSD------------------------------RDETGAYLID 70 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCC------------------------------ccccCceEec
Confidence 4466778999999999999888756655443322111110 0001122356
Q ss_pred CCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
=+|..|..+|+|+-.|++.++.-.-+.+|.-|+++.++.|.+...+.+...
T Consensus 71 RDP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 71 RDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cCcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 788999999999999999999977888999999999999999988887764
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=27 Score=36.78 Aligned_cols=218 Identities=11% Similarity=0.147 Sum_probs=109.9
Q ss_pred EEEEeCCCCceEEccC-CCccc-ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-CCCcceeEEEEE-
Q psy10286 479 VEVFDPLVGRWQMAEA-MSMLR-SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-CFKRSAVGAAAL- 554 (748)
Q Consensus 479 ~~~yd~~~~~W~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~- 554 (748)
++.-.-.-.+|++... ++... ...++...++..|+.|.. ..+++=+-.-.+|+.+... ..+........+
T Consensus 68 il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~ 141 (334)
T PRK13684 68 LLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALG 141 (334)
T ss_pred EEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEEC
Confidence 3333334457988643 32222 223333345567776532 2344433344589987532 122222333344
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEE-ECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERY-DPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y-d~~~~~W~~~ 633 (748)
++.+|+.|.. ..+++=+-.-.+|+.+.... .-..+.+....+..|+..|..+ .++.- |....+|+.+
T Consensus 142 ~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~ 209 (334)
T PRK13684 142 PGTAEMATNV------GAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPH 209 (334)
T ss_pred CCcceeeecc------ceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEe
Confidence 4456666542 24555555667899886433 2233444444444455544433 34433 4455679988
Q ss_pred cCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEE--eCCCCcEEEccCCCC-C-CcceEEEEE-CCEEEEEeCCCC
Q psy10286 634 KPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMY--DPITDEWKMIASMNV-M-RSRVALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~p~-~-r~~~~~~~~-~~~l~v~GG~~~ 707 (748)
.. +..+...+++.. ++.++++|.. + ...+ +-.-.+|+.+..... . ..-++++.. ++.++++|+..
T Consensus 210 ~~-~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G- 280 (334)
T PRK13684 210 QR-NSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG- 280 (334)
T ss_pred eC-CCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-
Confidence 53 444555555544 6788888752 1 2234 223358997643211 1 112333333 67888887531
Q ss_pred CCCCCeEEEEeCCCCceEecC
Q psy10286 708 VSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.+..-.....+|+.++
T Consensus 281 -----~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 281 -----TLLVSKDGGKTWEKDP 296 (334)
T ss_pred -----eEEEeCCCCCCCeECC
Confidence 2333334456898874
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.21 E-value=24 Score=36.26 Aligned_cols=221 Identities=15% Similarity=0.228 Sum_probs=98.8
Q ss_pred eEEEEeCCCCceEEccC-CCcc-c-ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc-CCCCCcceeEEEE
Q psy10286 478 TVEVFDPLVGRWQMAEA-MSML-R-SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS-PMCFKRSAVGAAA 553 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~-~~~~-r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~~ 553 (748)
.+..=+---.+|+.... .+.+ . ...++...++..|++|.. .-+.+-.-.-.+|+.++ +.+.+-..+....
T Consensus 38 ~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~ 111 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITA 111 (302)
T ss_dssp EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEE
T ss_pred EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEE
Confidence 34444444467988753 2222 2 233445558889998742 23444445567899985 2233334444444
Q ss_pred E-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 554 L-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+ ++.++++|.. ..+++-.-.-.+|+.+..-...- ...+.. -++++++++.. + +-....|+....|.
T Consensus 112 l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~-G----~~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 112 LGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSR-G----NFYSSWDPGQTTWQ 179 (302)
T ss_dssp EETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-S----SEEEEE-TT-SS-E
T ss_pred cCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECc-c----cEEEEecCCCccce
Confidence 4 6677777653 34566555677899875433221 222233 36676656543 2 12346788888999
Q ss_pred EccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEe--CCCCcEEEccCCCCCCcce--EEEEE--CCEEEEEeCC
Q psy10286 632 SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYD--PITDEWKMIASMNVMRSRV--ALVAN--MGKLWAIGGY 705 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~r~~~--~~~~~--~~~l~v~GG~ 705 (748)
........|.......-++.+++++ ..+ .+..=+ ....+|.+- ..|....++ --+.+ ++.+++.||.
T Consensus 180 ~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~-~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 180 PHNRNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEP-IIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EEE--SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred EEccCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccc-cCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 8765444444333334467888765 332 233333 344567762 223222333 32333 6899999984
Q ss_pred CCCCCCCeEEEEeCCCCceEecCC
Q psy10286 706 DGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
. .+++=.=...+|+..+.
T Consensus 253 G------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 253 G------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp T-------EEEESSTTSS-EE-GG
T ss_pred c------cEEEeCCCCccceECcc
Confidence 2 23333334468887653
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=31 Score=37.54 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=106.6
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
.++|.+|+.+++=+.+...+. ........-|| +|.+.-..++ -.+++.+|..++.++.+...+..-....-..-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 489999999887666654322 11112223355 5655443332 368999999999998886544311111111224
Q ss_pred CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCc---cccEEEEEeCCCCcEE
Q psy10286 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAI---FLQSVEMYDPITDEWK 678 (748)
Q Consensus 603 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~---~~~~v~~yd~~~~~W~ 678 (748)
.+||+.....+ ...++.+|..+.+.+++.... .... ...-+| .|.......... ...+++.+|+.+..++
T Consensus 289 ~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 289 KRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 46777654432 358999999999887765321 1222 223344 454444322211 2358999999999999
Q ss_pred EccCCCCCCcceEEEEECCE-EEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 679 MIASMNVMRSRVALVANMGK-LWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.+.... ....-...-+|+ |++.... + ....++.++...+.=..++
T Consensus 363 ~LT~~~--~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 363 RLTANG--VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred ECCCCC--CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEee
Confidence 886532 222222223555 4444332 1 2246888888776544444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=89.83 E-value=26 Score=38.14 Aligned_cols=204 Identities=14% Similarity=0.042 Sum_probs=109.1
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCC------CCceEEEEeCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVS------SLNTVECYEPDK 580 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~------~~~~~~~yd~~~ 580 (748)
+++..+++=..++.....+.++|..+++...- .++...... ++.. +++.++....+... .-..++++...+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 56666665433444455799999999954321 122222222 4444 43444444443322 257888888877
Q ss_pred CeEE--EccCCCCCCc-ceEEE-EECCEEEEEccCCCCcccCeEEEEECCCC-----cEEEccCCCCCCcceeEEEECCE
Q psy10286 581 DQWR--IVKSMQKHRS-AGGVI-AFDSYVYALGGHDGLSIFDSVERYDPKTD-----EWTSVKPMLTKRCRLGVAALNNK 651 (748)
Q Consensus 581 ~~W~--~~~~~~~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~ 651 (748)
..-+ .+-.-+.... ...+. .-+++..++.-..+.. .+.++..|.... .|..+.+ +.....+.+...++.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDR 289 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCE
Confidence 6543 2212222222 22222 2244433333222222 478999999875 7888753 222333444556899
Q ss_pred EEEEeccCCCccccEEEEEeCCCCc---EEE-ccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 652 IYVCGGYDGAIFLQSVEMYDPITDE---WKM-IASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 652 i~v~GG~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+|+....+ .....+..++..... |.. +.+-.....--.+...++.|++..=.++ ...+.+||+.
T Consensus 290 ~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~ 357 (414)
T PF02897_consen 290 LYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT
T ss_pred EEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECC
Confidence 99987633 334678888887765 764 4332222344555667888888753332 3578999998
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=34 Score=37.27 Aligned_cols=189 Identities=8% Similarity=0.015 Sum_probs=103.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEEC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALN 555 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 555 (748)
.++|.+|..+++=+.+...+..-. .....-+| +|.+.-...+ ..++|.+|..++.++.+...+.. .......-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCc-cCccEECCC
Confidence 489999999887777765322111 11122244 5655433222 35899999999999888664431 111122224
Q ss_pred C-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCc---ccCeEEEEECCCCcEE
Q psy10286 556 D-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS---IFDSVERYDPKTDEWT 631 (748)
Q Consensus 556 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~ 631 (748)
| +||......+ ...++.+|..+++.+.+..-.. .......-++.|.......+.. ...+++.+|+.++.++
T Consensus 288 G~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 288 DKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 4 6776654332 3589999999988877643211 2222222244454444322111 2358999999999998
Q ss_pred EccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 632 SVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
.+.... ....-...-+|+ |+..... + ....++.++...+.=..+
T Consensus 363 ~LT~~~--~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 363 RLTANG--VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ECCCCC--CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEe
Confidence 886532 121122223454 4444332 1 124577777766544444
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=89.75 E-value=26 Score=36.00 Aligned_cols=240 Identities=14% Similarity=0.159 Sum_probs=105.2
Q ss_pred eEeecCCCCceeecccc------cccceEEecccccccCCCccceEEEEeCCCCceEEccC-CCcccceeEEEEE-CCEE
Q psy10286 440 VEVFDPLVGRWQMAEEE------TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVM-KNRL 511 (748)
Q Consensus 440 ~~~y~~~~~~W~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~i 511 (748)
+..-+.--.+|+..... ....++...+...+..|.. .-+..-.-.-.+|++++- .+.|-..+.+..+ ++.+
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~ 117 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSA 117 (302)
T ss_dssp EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEE
T ss_pred EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcE
Confidence 33334444677765421 1122333333333444432 234444555678999862 2344444555555 5677
Q ss_pred EEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC
Q psy10286 512 YAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 512 yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
+++|.. ..+++=.-.-.+|+.+..-...-..-....-+|+++++|... +-....|+....|+.......
T Consensus 118 ~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 118 ELAGDR------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp EEEETT--------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE--SS
T ss_pred EEEcCC------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEccCcc
Confidence 777643 346665556678998754333222222222367766666432 234467888889998865544
Q ss_pred CCcceEEEEECCEEEEEccCCCCcccCeEEEEE--CCCCcEEEccCCCCCCccee---EEEE-CCEEEEEeccCCCcccc
Q psy10286 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYD--PKTDEWTSVKPMLTKRCRLG---VAAL-NNKIYVCGGYDGAIFLQ 665 (748)
Q Consensus 592 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd--~~~~~W~~~~~~p~~r~~~~---~~~~-~~~i~v~GG~~~~~~~~ 665 (748)
.|-......-++.+++++ ..+ .+..=+ -...+|.+.. .|....+++ ++.. ++.+|+.||..
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G------ 253 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSG------ 253 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT------
T ss_pred ceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCc------
Confidence 444444444477888765 222 344444 3455677632 233223332 2322 58899999843
Q ss_pred EEEEEeCCCCcEEEccC-CCCCCcceEEEE-ECCEEEEEeC
Q psy10286 666 SVEMYDPITDEWKMIAS-MNVMRSRVALVA-NMGKLWAIGG 704 (748)
Q Consensus 666 ~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~l~v~GG 704 (748)
.+++=.-.-++|+.... .+.+-.-..++. -+++-|++|.
T Consensus 254 ~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 254 TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 44444456678999753 223333344444 4679999985
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=89.50 E-value=31 Score=36.46 Aligned_cols=265 Identities=18% Similarity=0.195 Sum_probs=128.5
Q ss_pred ceEeecCCCCceeecccccc-cc---eEEe-cccccccCCC---ccceEEEE--eCCCCceEEccCCCcccceeEEEEE-
Q psy10286 439 TVEVFDPLVGRWQMAEEETL-SN---AVIS-TKSCLTKAGD---SLSTVEVF--DPLVGRWQMAEAMSMLRSRVGVAVM- 507 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~~~~-~~---~~~~-~~~~~~~~g~---~~~~~~~y--d~~~~~W~~~~~~~~~r~~~~~~~~- 507 (748)
....||..++++..+..... .+ ..+. .+..+|.... ....+..| +..+++.+.+...+......+.+.+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe
Confidence 44556778888877654111 11 1111 2333333322 23345555 4444678777766533333333333
Q ss_pred --CCEEEEEccCCCCCCCCeEEEEECCCC-eEEEc---------cCC---CCCcceeEEEEE-C-CEEEEEeCCCCCCCC
Q psy10286 508 --KNRLYAFGGYNGSERLSTVEEFDPVRR-VWNKV---------SPM---CFKRSAVGAAAL-N-DKLYVCGGYDGVSSL 570 (748)
Q Consensus 508 --~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~---------~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~ 570 (748)
+..+|+.- +. ...+.+|+...+ +-... .+- ...-..|.+... + +.+|+..= ..
T Consensus 96 ~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~ 165 (345)
T PF10282_consen 96 PDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GA 165 (345)
T ss_dssp TTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TT
T ss_pred cCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CC
Confidence 44666652 11 235777776653 21111 111 122334555554 3 46777531 23
Q ss_pred ceEEEEeCCCCe--EEEccCC--CCCC-cceEEEEE-CCEEEEEccCCCCcccCeEEEE--ECCCCcEEEcc---CCCCC
Q psy10286 571 NTVECYEPDKDQ--WRIVKSM--QKHR-SAGGVIAF-DSYVYALGGHDGLSIFDSVERY--DPKTDEWTSVK---PMLTK 639 (748)
Q Consensus 571 ~~~~~yd~~~~~--W~~~~~~--~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~---~~p~~ 639 (748)
+.++.|+...+. ....... |..- -.|.+..- +..+|+..-.+ +.+..| +..+..|+.+. .+|..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeecccc
Confidence 678888887765 5553322 2211 11333322 45899987653 345554 44477776653 33322
Q ss_pred ---C-cceeEEEE--CCEEEEEeccCCCccccEEEEEeC--CCCcEEEccCCCCCCcc-eEEEE--ECCEEEEEeCCCCC
Q psy10286 640 ---R-CRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDP--ITDEWKMIASMNVMRSR-VALVA--NMGKLWAIGGYDGV 708 (748)
Q Consensus 640 ---r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r~~-~~~~~--~~~~l~v~GG~~~~ 708 (748)
. ..+.++.. +..+|+.-.. .+.|.+|+. .+.+.+.+...+..-.. ..+.. -++.|||.+..+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-- 313 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-- 313 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT--
T ss_pred ccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC--
Confidence 1 22223333 4467776422 467777776 55666666555442211 12222 345566654322
Q ss_pred CCCCeEEEE--eCCCCceEecC
Q psy10286 709 SNLPTVEVY--DPSTDSWAFVA 728 (748)
Q Consensus 709 ~~~~~v~~y--d~~~~~W~~~~ 728 (748)
+.|.+| |.+++.++...
T Consensus 314 ---~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 ---NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ---TEEEEEEEETTTTEEEEEE
T ss_pred ---CeEEEEEEeCCCCcEEEec
Confidence 345555 77889998775
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=88.89 E-value=46 Score=37.65 Aligned_cols=150 Identities=12% Similarity=0.160 Sum_probs=71.8
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccC
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP 635 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 635 (748)
.+++.||.+ ..+..||..+.+=. ..+..+..-.++.. .+|.+++.|+.+ ..+..||+.+.+= +..
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~t 204 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--ASS 204 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EEE
Confidence 455667754 46778888776411 11111111122222 267777777653 3688999987642 221
Q ss_pred CCCCCc--ceeEEE-----ECCEEEEEeccCCCccccEEEEEeCCC-CcEEEccCCCCCCcceEEEEE---CCEEEEEeC
Q psy10286 636 MLTKRC--RLGVAA-----LNNKIYVCGGYDGAIFLQSVEMYDPIT-DEWKMIASMNVMRSRVALVAN---MGKLWAIGG 704 (748)
Q Consensus 636 ~p~~r~--~~~~~~-----~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG 704 (748)
+..... ...++. -++..++.+|.++. ....+.+||... ..-...-.+... .+.....+ .+.+|+.|.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEE
Confidence 111110 011111 24456666666542 123688899774 221111011110 11111122 477888875
Q ss_pred CCCCCCCCeEEEEeCCCCceEec
Q psy10286 705 YDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.+ ..+.+|+...+.-..+
T Consensus 283 GD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 283 GD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CC-----CeEEEEEccCCcEEee
Confidence 33 3578888766644333
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=59 Score=38.02 Aligned_cols=240 Identities=11% Similarity=0.010 Sum_probs=120.3
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCC-CCCCeEEEEECCCCeE--EEccCCCCCcceeE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGS-ERLSTVEEFDPVRRVW--NKVSPMCFKRSAVG 550 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W--~~~~~~~~~r~~~~ 550 (748)
-...++..|..++... ...++..+ ..++.. ++.-+++...... .....++++++.|..- ..+-.-+.......
T Consensus 151 E~~~l~v~d~~tg~~l-~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~ 227 (686)
T PRK10115 151 RQYGIRFRNLETGNWY-PELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS 227 (686)
T ss_pred EEEEEEEEECCCCCCC-CccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEE
Confidence 3346777788776421 11111222 334443 4443333333222 2457899999998832 22211112222323
Q ss_pred EEEE-CCEEEEEeCCCCCCCCceEEEEeC--CCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECC-
Q psy10286 551 AAAL-NDKLYVCGGYDGVSSLNTVECYEP--DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK- 626 (748)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~- 626 (748)
.... +++..++....+ ..+.++.|+. .+..|..+.+.+.. ........++.+|+.--.+.. ...+...+..
T Consensus 228 ~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~~--~~~l~~~~~~~ 302 (686)
T PRK10115 228 LHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHGK--NFGLYRTRVRD 302 (686)
T ss_pred EEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCCC--CceEEEecCCC
Confidence 3333 444334544333 2356777773 23444333222222 112333456788887644322 3457777776
Q ss_pred CCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE---EC-CEEEE-
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA---NM-GKLWA- 701 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~-~~l~v- 701 (748)
+.+|+.+-+....+.--++...++.+++..-.++ ...++++|..+.....+. ++.+........ .+ +.+++
T Consensus 303 ~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 378 (686)
T PRK10115 303 EQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYG 378 (686)
T ss_pred cccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEE
Confidence 5789887644333333345555788877764443 356888887666665553 112222211111 11 34433
Q ss_pred EeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
+.+.. .-.+++.||+.+++|+.+..
T Consensus 379 ~ss~~---~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 379 YSSMT---TPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred EecCC---CCCEEEEEECCCCcEEEEEe
Confidence 33332 33589999999999887654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=87.64 E-value=27 Score=36.92 Aligned_cols=236 Identities=13% Similarity=0.016 Sum_probs=110.5
Q ss_pred ceEEEEeCCCCceEEccCCCcc-cceeEEEEECCEE-EEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSML-RSRVGVAVMKNRL-YAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i-yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..++..|..+.+-+++...+.. ..+..++.-++.+ |+-.| ..++..|+.|.+=+.+-..|..-.+.+..+.
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~ 132 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVA 132 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEEEEE--TTEEEEEEEEE
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEEEEECCcccccccceee
Confidence 5789999999999999887643 2232222225565 44444 4789999999887777777766665555544
Q ss_pred --CCEEEEEeCC----C--------------CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCC-
Q psy10286 555 --NDKLYVCGGY----D--------------GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHD- 612 (748)
Q Consensus 555 --~~~iyv~GG~----~--------------~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~- 612 (748)
++..+ +|=. + .......+...|..+++.+.+-.-. ...+|.... .+..+.+|.=..
T Consensus 133 n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGp 210 (386)
T PF14583_consen 133 NSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGP 210 (386)
T ss_dssp -TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-
T ss_pred CCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCC
Confidence 23332 2210 0 0123456677788777766552211 111222222 234444442111
Q ss_pred CCcccCeEEEEECCCCcEEEccC-CCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVKP-MLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV 690 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 690 (748)
....-..+|..|.......++.. ++....+|---+.+|. |+..+...+ +...-+..||+.+..=+.+..+| ++.|
T Consensus 211 w~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~~~~~~p--~~~H 287 (386)
T PF14583_consen 211 WDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERRRLMEMP--WCSH 287 (386)
T ss_dssp TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EEEEEEE---SEEE
T ss_pred cceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCceEEEeCC--ceee
Confidence 11223479999988777766643 2333333444444554 444443222 22345788999987544454444 5778
Q ss_pred EEEEECCEEEEEeCCCCCC-----------CCCeEEEEeCCCCce
Q psy10286 691 ALVANMGKLWAIGGYDGVS-----------NLPTVEVYDPSTDSW 724 (748)
Q Consensus 691 ~~~~~~~~l~v~GG~~~~~-----------~~~~v~~yd~~~~~W 724 (748)
-....+++++|--|.+... ..+-+++++++++.-
T Consensus 288 ~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 288 FMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred eEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 8888899999875543211 112455677776653
|
|
| >KOG1724|consensus | Back alignment and domain information |
|---|
Probab=87.54 E-value=1 Score=41.17 Aligned_cols=54 Identities=9% Similarity=0.282 Sum_probs=44.6
Q ss_pred ecCCCHHHHHHHHHhhhceeE-------------------------EeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 152 MQGIDAVAMEALINFVYSGRV-------------------------TIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 152 ~~~~~~~~~~~~l~flYtg~~-------------------------~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|+.|...+|..+|+|++-=.- .++..++.+|+.||++|+++.|...|+..+...
T Consensus 48 l~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~m 126 (162)
T KOG1724|consen 48 LPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANM 126 (162)
T ss_pred cCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 388999999999999997221 145557999999999999999999999887663
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=87.02 E-value=44 Score=35.25 Aligned_cols=107 Identities=13% Similarity=-0.024 Sum_probs=60.5
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEE-EECCEEEEEccCC----CCCCCCeEEEEECCCCeEEE-ccCCCCCcc---
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVA-VMKNRLYAFGGYN----GSERLSTVEEFDPVRRVWNK-VSPMCFKRS--- 547 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~-~~~~~~~r~--- 547 (748)
+.+..+|..+.+- ++..+..+..+... .-+..+|+.-.+- .+...+.+.+||+.|.+=.. ++-.+.||.
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 6788999887553 33333332222232 2356799987632 23456789999999987542 322233341
Q ss_pred --eeEEEE-ECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC
Q psy10286 548 --AVGAAA-LND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 548 --~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
....+. -+| .+|+.- ...-+.+-+.|..+++--..-+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEEEEeC
Confidence 112222 244 677752 12347889999988875443333
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=52 Score=36.00 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=75.1
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCE-EEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSY-VYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+|+..++.+.++. -..++.+|..++.-+.+...+... ......-+|+ |++....++. .++|.+|+.+.....+
T Consensus 214 DG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 214 DGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQL 287 (429)
T ss_pred CCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEee
Confidence 5543444433221 256889999887766665443211 1112222554 4443333332 3689999988877766
Q ss_pred cCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCC
Q psy10286 634 KPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP 712 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 712 (748)
......-. .....-+++ |++....++ ...+|.+|.....-..++.. .. .....-+++.+++.+. .
T Consensus 288 t~~~~~~~-~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~~---~~-~~~~SpDG~~ia~~~~------~ 353 (429)
T PRK01742 288 TSGAGNNT-EPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGGR---GY-SAQISADGKTLVMING------D 353 (429)
T ss_pred ccCCCCcC-CEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecCC---CC-CccCCCCCCEEEEEcC------C
Confidence 43221111 111122444 554443322 24788888766544433211 11 1112224444434332 3
Q ss_pred eEEEEeCCCCceEec
Q psy10286 713 TVEVYDPSTDSWAFV 727 (748)
Q Consensus 713 ~v~~yd~~~~~W~~~ 727 (748)
.++.+|+.++.++.+
T Consensus 354 ~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 354 NVVKQDLTSGSTEVL 368 (429)
T ss_pred CEEEEECCCCCeEEe
Confidence 577789888887654
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=86.80 E-value=25 Score=37.15 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC-----CCCC--CcceEEEEECCEE
Q psy10286 533 RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS-----MQKH--RSAGGVIAFDSYV 605 (748)
Q Consensus 533 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-----~~~~--r~~~~~~~~~~~i 605 (748)
.+.|+.+.. ..-..-.++.++|++|++.- ...++.++.+-. =+++++ +... ......+...|.+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 389999964 22335578888999999832 235666664311 122221 1111 1224466678889
Q ss_pred EEEccCCCC--------------cccCeEEEEECCCCcEEEccCCC
Q psy10286 606 YALGGHDGL--------------SIFDSVERYDPKTDEWTSVKPML 637 (748)
Q Consensus 606 yv~GG~~~~--------------~~~~~~~~yd~~~~~W~~~~~~p 637 (748)
+++...... ...-.|++.|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 998874211 01224667788889999987653
|
|
| >PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] | Back alignment and domain information |
|---|
Probab=86.39 E-value=0.77 Score=36.53 Aligned_cols=35 Identities=14% Similarity=0.477 Sum_probs=28.7
Q ss_pred eechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 174 IHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 174 i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
++...+.+|+.||++|+|+.|.+.|+.++...+.-
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g 45 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKG 45 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC
Confidence 46668999999999999999999999999876543
|
It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A .... |
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=86.14 E-value=62 Score=36.10 Aligned_cols=153 Identities=11% Similarity=0.123 Sum_probs=72.2
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEE-ccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEE-E
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWR-I 585 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 585 (748)
+.+++.||.+ ..+..||..+++-.. +..-. ..-.+++. .++.+++.|+.+ ..+..||+.++.-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 4577777754 468888988764321 11111 11122222 267778888765 46788998876521 1
Q ss_pred ccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEE--CCEEEEEeccCCC
Q psy10286 586 VKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGA 661 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 661 (748)
+..-...+........++..++.+|.+.. .-..+..||+.+.. .... .... .....+..+ ++.++++||.+.
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 11111111111111123333444443221 12468888876533 1111 1111 111222223 456666666422
Q ss_pred ccccEEEEEeCCCCcEEEc
Q psy10286 662 IFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~ 680 (748)
..|.+||..+......
T Consensus 282 ---g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 282 ---GNIRCFELMNERLTFC 297 (493)
T ss_pred ---CeEEEEEeeCCceEEE
Confidence 3677888877765443
|
|
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=85.83 E-value=8 Score=34.13 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=57.3
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEECCEEEEEccCCCC-cccCeEEEE-ECC
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAFDSYVYALGGHDGL-SIFDSVERY-DPK 626 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~y-d~~ 626 (748)
+.+||-+|-.+.. .......+.+||..+++|+.+.. ..........+.++|+|-++.-.... ...-++|.. |..
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3568888877654 23345788999999999988854 23456667888899999887655332 123477877 456
Q ss_pred CCcEEEcc
Q psy10286 627 TDEWTSVK 634 (748)
Q Consensus 627 ~~~W~~~~ 634 (748)
+.+|++..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 77899764
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.51 E-value=41 Score=33.50 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=97.3
Q ss_pred eEEEEeCCCCceEEccC-CCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-
Q psy10286 478 TVEVFDPLVGRWQMAEA-MSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA- 553 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~- 553 (748)
.+-++|+++..-++.+- ...+-.+.-..+. .|.++..|-..-.. ++||.++.-+..+. |..-.-.++|+
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpa-PqG~gpyGi~at 197 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVFPA-PQGGGPYGICAT 197 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce------ecCcccCceeeecc-CCCCCCcceEEC
Confidence 67888988876655431 1122223333444 56788777432111 56777765443322 23333344444
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC-cceE--EEEECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR-SAGG--VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
-+|.+|+..=. -+-+-..||.+..=+.++ .|.+. .+.- -+--.+++++.--. ...+++|||.+..|
T Consensus 198 pdGsvwyasla-----gnaiaridp~~~~aev~p-~P~~~~~gsRriwsdpig~~wittwg-----~g~l~rfdPs~~sW 266 (353)
T COG4257 198 PDGSVWYASLA-----GNAIARIDPFAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITTWG-----TGSLHRFDPSVTSW 266 (353)
T ss_pred CCCcEEEEecc-----ccceEEcccccCCcceec-CCCcccccccccccCccCcEEEeccC-----CceeeEeCcccccc
Confidence 48888876211 144556677766433332 22221 1111 11124566665211 35799999999999
Q ss_pred EEccC-CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 631 TSVKP-MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 631 ~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
.+-+- -..+|....-+--.+++++--- ..+.+.+||+.+.+.+.++
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 98742 2233433333333567776321 2467899999998887763
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.38 E-value=12 Score=38.74 Aligned_cols=104 Identities=16% Similarity=0.038 Sum_probs=58.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCC----CCCCCCeEEEEECCCCeEEEccCCCC-Ccce--
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYN----GSERLSTVEEFDPVRRVWNKVSPMCF-KRSA-- 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~-- 548 (748)
..++.+|..+++- ++.++..-.++.+..- ++.+|+..=+- .+.+..-++.||..|-+=+.--.+|. +|..
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5789999888774 3333444444433333 45677765421 23456679999999985432212222 1321
Q ss_pred ----eEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 549 ----VGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 549 ----~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
..... -+..+||.- ..+-.+|-+.|...++.-..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~e 133 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGE 133 (342)
T ss_dssp --GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEE
T ss_pred ccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeee
Confidence 12222 244666652 23567899999999887543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants | Back alignment and domain information |
|---|
Probab=85.11 E-value=9.6 Score=33.64 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=56.3
Q ss_pred EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCC---CCCCcceEEEEECCEEEEEeCCCCCC-CCCeEEEE-eCC
Q psy10286 646 AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM---NVMRSRVALVANMGKLWAIGGYDGVS-NLPTVEVY-DPS 720 (748)
Q Consensus 646 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~v~~y-d~~ 720 (748)
+.++|-+|-.+-. .....+.|..||..+.+|+.+..+ .........+.++|+|-++.-..... ..-++|++ |.+
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3467888777655 333457899999999999887543 23455677888899999986544332 23467887 566
Q ss_pred CCceEec
Q psy10286 721 TDSWAFV 727 (748)
Q Consensus 721 ~~~W~~~ 727 (748)
+.+|...
T Consensus 81 k~~Wsk~ 87 (129)
T PF08268_consen 81 KQEWSKK 87 (129)
T ss_pred cceEEEE
Confidence 7899864
|
Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain. |
| >KOG2716|consensus | Back alignment and domain information |
|---|
Probab=84.98 E-value=1.1 Score=43.41 Aligned_cols=60 Identities=13% Similarity=0.316 Sum_probs=48.1
Q ss_pred ccCCcccchhhhhhhhHHHHHHHhhcceeEEE--ecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 206 FHPNNVLDYYVLFSCRAMEALINFAYSGRVTI--HSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 206 l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~--~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
.+.++|+-|.+- .-+|..+++|++.|.+.+ +.+++.+|+..|++|.|++|.+.|..-+..
T Consensus 42 ~d~s~~IFIDRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 42 KDESGCIFIDRS--PKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred cCCcCcEEecCC--hhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 455778777663 446777999999777654 556788999999999999999999988764
|
|
| >PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.93 E-value=0.95 Score=45.88 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=48.1
Q ss_pred cchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHH
Q psy10286 212 LDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSE 291 (748)
Q Consensus 212 l~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~ 291 (748)
++|..-.+...|+=|++|+....-.++..|+..|+..++|+++ ++|.+
T Consensus 47 idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M--------------------------------~~Lve 94 (317)
T PF11822_consen 47 IDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQM--------------------------------ESLVE 94 (317)
T ss_pred cceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhcc--------------------------------HHHHH
Confidence 3333334445566688887664444555555555555555554 56666
Q ss_pred HHHHHHHHhhhhhcc-CcccccCCHHhHhccc
Q psy10286 292 AADKYVQQYFHEVSM-SDEFIGLGVNEVNDIV 322 (748)
Q Consensus 292 ~~~~~i~~~~~~l~~-~~~f~~L~~~~l~~il 322 (748)
.|+.|+..|+.+++. ...+.-|+.+.|..+.
T Consensus 95 ~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa 126 (317)
T PF11822_consen 95 ECLQYCHDHMSEIVASPCNLNCLNDNLLTRLA 126 (317)
T ss_pred HHHHHHHHhHHHHHcCCCCcccCCHHHHHHHH
Confidence 667777778888776 4567778777776663
|
This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=84.82 E-value=61 Score=34.90 Aligned_cols=217 Identities=9% Similarity=0.032 Sum_probs=105.3
Q ss_pred EEEeCCCCceEEccC-C--Cccc--ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEE
Q psy10286 480 EVFDPLVGRWQMAEA-M--SMLR--SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAA 553 (748)
Q Consensus 480 ~~yd~~~~~W~~~~~-~--~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~ 553 (748)
..-+-.-++|++... . ...+ ...++...++..|++|-. ..+..=+-.-.+|+.++..+ .+-.......
T Consensus 113 L~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~ 186 (398)
T PLN00033 113 LETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGEPVLIKA 186 (398)
T ss_pred EEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCCceEEEE
Confidence 333334457887531 1 1111 234555567888888642 13333333456899875421 1111233333
Q ss_pred E-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC----CCC--------------cceEEEE-ECCEEEEEccCCC
Q psy10286 554 L-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ----KHR--------------SAGGVIA-FDSYVYALGGHDG 613 (748)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r--------------~~~~~~~-~~~~iyv~GG~~~ 613 (748)
+ ++..+++|.. ..+++-+-...+|+.....+ ..+ ....+.. -++.++++|-.
T Consensus 187 ~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-- 258 (398)
T PLN00033 187 TGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-- 258 (398)
T ss_pred ECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC--
Confidence 4 4567777742 23555555567898862111 111 1111222 24455555542
Q ss_pred CcccCeEEE-EECCCCcEEEccCCCCCCcceeEE-EECCEEEEEeccCCCccccEEEEEeCCCCcE-----EEccCCCCC
Q psy10286 614 LSIFDSVER-YDPKTDEWTSVKPMLTKRCRLGVA-ALNNKIYVCGGYDGAIFLQSVEMYDPITDEW-----KMIASMNVM 686 (748)
Q Consensus 614 ~~~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-----~~~~~~p~~ 686 (748)
..+++ .|.....|+.+.... ++...++. ..++.++++|.. ..+..-+.....| ..+.. +..
T Consensus 259 ----G~~~~s~d~G~~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-~~~ 326 (398)
T PLN00033 259 ----GNFYLTWEPGQPYWQPHNRAS-ARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-KSR 326 (398)
T ss_pred ----ccEEEecCCCCcceEEecCCC-ccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-CCC
Confidence 23443 344444599885433 33333333 347888888753 2333333333434 44332 222
Q ss_pred Ccc-eEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 687 RSR-VALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 687 r~~-~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
+.. ..+... ++.++++|... .+..-.....+|+...
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 222 333333 67888888632 2444455567888764
|
|
| >PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A | Back alignment and domain information |
|---|
Probab=84.09 E-value=51 Score=33.33 Aligned_cols=215 Identities=13% Similarity=0.131 Sum_probs=103.5
Q ss_pred CCCceEEccC---CC--cccceeEEEEE--CCEEEEEc--cCCCC-CCCCe-EEEEECC-CCeEEEccCCCC--------
Q psy10286 485 LVGRWQMAEA---MS--MLRSRVGVAVM--KNRLYAFG--GYNGS-ERLST-VEEFDPV-RRVWNKVSPMCF-------- 544 (748)
Q Consensus 485 ~~~~W~~~~~---~~--~~r~~~~~~~~--~~~iyv~G--G~~~~-~~~~~-v~~yd~~-t~~W~~~~~~~~-------- 544 (748)
.-.+|..... .+ ..+.+..+.+. +|+|+++. +.... ..... .+..... -.+|+....++.
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 3457976432 22 22333333332 88888886 22211 11112 1233333 457987654321
Q ss_pred CcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCC-CCeEEEccCCC-CCCcceEEEE-E-CCEEEEEccCCCCcccCeE
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPD-KDQWRIVKSMQ-KHRSAGGVIA-F-DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~-~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~ 620 (748)
+-.......-+|.+++..-............|... ..+|+.....+ .......+.+ . +|.|+++.-..... ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 11222234448888876211111122333444444 55699887664 2233333333 3 77888886542111 223
Q ss_pred EEEECC-CCcEEEcc--CCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCC---CcceE-E
Q psy10286 621 ERYDPK-TDEWTSVK--PMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM---RSRVA-L 692 (748)
Q Consensus 621 ~~yd~~-~~~W~~~~--~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~~-~ 692 (748)
..+... -.+|+... .+|.+.....++.. +++++++.........-.++.-.....+|.....+... .+++. +
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~ 265 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSL 265 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCee
Confidence 333333 45799865 45555555555554 57888887732222222333333447889876444332 24444 3
Q ss_pred EEE-CCEEEE
Q psy10286 693 VAN-MGKLWA 701 (748)
Q Consensus 693 ~~~-~~~l~v 701 (748)
+.. +|+|+|
T Consensus 266 ~~~~dg~l~i 275 (275)
T PF13088_consen 266 TQLPDGKLYI 275 (275)
T ss_dssp EEEETTEEEE
T ss_pred EEeCCCcCCC
Confidence 444 679886
|
... |
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=83.69 E-value=41 Score=32.60 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=72.2
Q ss_pred ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC--CEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 601 FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN--NKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 601 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
.++.=+.-||.+ ..+..+|..|++-..- +..-.....++.++ ..+++-|+++ .++.++|-.++..+
T Consensus 69 ~Dnskf~s~GgD-----k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 69 SDNSKFASCGGD-----KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFE 136 (307)
T ss_pred ccccccccCCCC-----ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCC
Confidence 344444444432 4688999988764321 11111112234444 3577778765 57889999999999
Q ss_pred EccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 679 MIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.+..+...+.+...+.+.++.+|.|-.++ ++-.||+..++-
T Consensus 137 PiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l 177 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTL 177 (307)
T ss_pred ccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeeccee
Confidence 99888889999999999999988887654 477888776654
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=83.47 E-value=45 Score=35.26 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=76.8
Q ss_pred CcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEE
Q psy10286 545 KRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 545 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 622 (748)
....++++.+ ||.|+..|-.+ ..+-+||.++.. .++.+|..-.--.+..+ ++--|+.-+.++ ..|.+
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~l 415 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKL 415 (506)
T ss_pred cceeEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEE
Confidence 3445666666 77887776543 356788888776 55556552222222333 333344444332 13888
Q ss_pred EECCCCcEEEccCCCCCCc-ceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEEC--C
Q psy10286 623 YDPKTDEWTSVKPMLTKRC-RLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM--G 697 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~ 697 (748)
+|..... ..+..+.+-. ......+ .|..+++||. .-.||.|+-++..|+.+..++..-.-...+.++ .
T Consensus 416 wDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 416 WDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred EEehhhc--ccceeeccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 8887654 2222222211 2233334 3566777763 246788888899999987665443333344443 3
Q ss_pred EEEEEeCC
Q psy10286 698 KLWAIGGY 705 (748)
Q Consensus 698 ~l~v~GG~ 705 (748)
+++..||.
T Consensus 489 q~l~s~sm 496 (506)
T KOG0289|consen 489 QYLASTSM 496 (506)
T ss_pred eEEeeccc
Confidence 33344443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=83.19 E-value=76 Score=34.71 Aligned_cols=181 Identities=11% Similarity=0.039 Sum_probs=89.0
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeC-CCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGG-YDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|..+++-+.+...+.. .......-+|+..+++. .++. .++|.+|..++....+..-... .......-+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpD 302 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGAGN-NTEPSWSPD 302 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccCCCC-cCCEEECCC
Confidence 4689999988766665544321 11122223565444433 3322 4688899888776665432211 111111224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
| .|++....++ ...+|.+|..+..-..+.. ... .....-++ .|++.++ +.++.+|..+..+..+
T Consensus 303 G~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 303 GQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING-------DNVVKQDLTSGSTEVL 368 (429)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEe
Confidence 4 4555443322 2478888876654443321 111 11122244 4544443 4578899999888876
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... ........-+++.+++++.++. ..-+++.+...+.=+.+
T Consensus 369 t~~~--~~~~~~~sPdG~~i~~~s~~g~--~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 369 SSTF--LDESPSISPNGIMIIYSSTQGL--GKVLQLVSADGRFKARL 411 (429)
T ss_pred cCCC--CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCceEEc
Confidence 4221 1111122336777777664332 12334445544433333
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=81.75 E-value=53 Score=31.89 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=102.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeE----EEEEC--CEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVG----AAALN--DKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~----~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
+|.-+..||- .+.+..+|..|++-.+. ..+|. ++.+| ..+.+.|+++ .++.+||-.++
T Consensus 70 Dnskf~s~Gg-----Dk~v~vwDV~TGkv~Rr------~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~ 133 (307)
T KOG0316|consen 70 DNSKFASCGG-----DKAVQVWDVNTGKVDRR------FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSR 133 (307)
T ss_pred cccccccCCC-----CceEEEEEcccCeeeee------cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccC
Confidence 5555555553 35788999998863221 11222 22333 3566667765 57888998888
Q ss_pred eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCC
Q psy10286 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661 (748)
Q Consensus 582 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 661 (748)
..+.+.-+...+.+-..+.+.+...+.|..+| .+-.||+..++-..- -+..|-. .....-++...++|-.+
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~sD-y~g~pit-~vs~s~d~nc~La~~l~-- 204 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLSSD-YFGHPIT-SVSFSKDGNCSLASSLD-- 204 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecceeehh-hcCCcce-eEEecCCCCEEEEeecc--
Confidence 88887777778888888888888777776655 477888876653221 1111111 11111244455555433
Q ss_pred ccccEEEEEeCCCCcEEEc-cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 662 IFLQSVEMYDPITDEWKMI-ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..+...|-++.+--.. ......-+...++..+..-.|++|..+. -|+.||+...+
T Consensus 205 ---stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG----~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 205 ---STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG----KVYFWDLVDET 260 (307)
T ss_pred ---ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc----eEEEEEeccce
Confidence 2455566555432111 1111112233455566666777775432 47777776543
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=81.42 E-value=74 Score=33.72 Aligned_cols=132 Identities=9% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccC-----CCCC--CcceeEEEECCEE
Q psy10286 580 KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP-----MLTK--RCRLGVAALNNKI 652 (748)
Q Consensus 580 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~~~~~i 652 (748)
.+.|+.+.. ..-..--++.++|++|++.- ...++.++..- +-+++.+ +... +.....+...|++
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 489999964 22335567889999999843 23566666431 1122221 1111 1223455667889
Q ss_pred EEEeccCCCc--------------cccEEEEEeCCCCcEEEccCCCCC------CcceEEE------EECCEEEEEeCCC
Q psy10286 653 YVCGGYDGAI--------------FLQSVEMYDPITDEWKMIASMNVM------RSRVALV------ANMGKLWAIGGYD 706 (748)
Q Consensus 653 ~v~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~~p~~------r~~~~~~------~~~~~l~v~GG~~ 706 (748)
+++..+.... ..-.|+..|.+..+|.++..+... ....++. ..++.||+...
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd-- 337 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED-- 337 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC--
Confidence 9998753211 112456668888999999876422 1111111 12466777732
Q ss_pred CCCCCCeEEEEeCCCCceEec
Q psy10286 707 GVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~ 727 (748)
....+||.+.++-..+
T Consensus 338 -----~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 338 -----TMPKVFKLDNGNGSSI 353 (373)
T ss_pred -----CcceEEECCCCCccce
Confidence 2356888888774443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=81.22 E-value=1.2e+02 Score=35.57 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=121.5
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCce--eecccccccceEEeccc-ccccC---C-CccceEEEEeCCCCce--EE
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRW--QMAEEETLSNAVISTKS-CLTKA---G-DSLSTVEVFDPLVGRW--QM 491 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W--~~~~~~~~~~~~~~~~~-~~~~~---g-~~~~~~~~yd~~~~~W--~~ 491 (748)
+++.++++ .+..++...++++.|..++.. ..+.......+....+. ..+.. + ....++|+++..++.- ..
T Consensus 137 dg~~la~~-~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~l 215 (686)
T PRK10115 137 DNTIMALA-EDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDEL 215 (686)
T ss_pred CCCEEEEE-ecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeE
Confidence 34455554 344455566788888877752 22222111111111111 12211 1 1236788888887732 22
Q ss_pred ccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEEC--CCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCC
Q psy10286 492 AEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDP--VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568 (748)
Q Consensus 492 ~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 568 (748)
+-.-+........... +++..++.... ...+.++.|+. .+..|..+-+.+.... ......++.+|+.--.+.
T Consensus 216 v~~e~~~~~~~~~~~s~d~~~l~i~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~~-- 290 (686)
T PRK10115 216 VYEEKDDTFYVSLHKTTSKHYVVIHLAS--ATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRHG-- 290 (686)
T ss_pred EEeeCCCCEEEEEEEcCCCCEEEEEEEC--CccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcCCC--
Confidence 2211112222233333 44433344332 23356888883 3344433333222222 233344788888754432
Q ss_pred CCceEEEEeCC-CCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEE
Q psy10286 569 SLNTVECYEPD-KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 569 ~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 647 (748)
....+...+.. .+.|+.+-+....+.--.+...++.+++..-.++ ...++.+|..+.....+. ++.+... +...
T Consensus 291 ~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~~~ 365 (686)
T PRK10115 291 KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TWIA 365 (686)
T ss_pred CCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceE-eeec
Confidence 22346666766 5789887654333333344555788777765443 346888887666655543 1222221 1111
Q ss_pred E----C-CEEEEEeccCCCccccEEEEEeCCCCcEEEccC
Q psy10286 648 L----N-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS 682 (748)
Q Consensus 648 ~----~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (748)
. + +.+++.- .+...-.+++.||+.+.+|+.+..
T Consensus 366 ~~~~~~~~~~~~~~--ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 366 YNPEPETSRLRYGY--SSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred ccCCCCCceEEEEE--ecCCCCCEEEEEECCCCcEEEEEe
Confidence 1 1 3333321 122234689999999999887743
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=81.13 E-value=57 Score=31.88 Aligned_cols=103 Identities=17% Similarity=0.309 Sum_probs=60.3
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEcc----------------CCCCCCcceeEEEECCEEEEEeccCCCccccEE
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVK----------------PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----------------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 667 (748)
+-++-||.++ +-.+|.||- ++|..-. ....+++..+.+.-+++++|.-
T Consensus 176 krlvSgGcDn---~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCcc---ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 4578888865 335666664 3675432 2234555555555566665543
Q ss_pred EEEeCCCCcEEE--ccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCC-CceEecCCC
Q psy10286 668 EMYDPITDEWKM--IASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPST-DSWAFVAPM 730 (748)
Q Consensus 668 ~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~ 730 (748)
-+.+...|+. +.+.|.+....+-...++-|-|-||. +.|.++-... ++|..++..
T Consensus 240 --~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 240 --KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred --ecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEcccc
Confidence 2334567765 35566665555555556666666663 3567776555 599988653
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=81.01 E-value=66 Score=32.50 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred eEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECC
Q psy10286 525 TVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDS 603 (748)
Q Consensus 525 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~ 603 (748)
++..||..++.- ...+...-.-..++..+..=.+.||.+ ..+-.||..+..=..+..-..+-. ++.. ...
T Consensus 36 slrlYdv~~~~l--~~~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~--ci~~~~~~ 106 (323)
T KOG1036|consen 36 SLRLYDVPANSL--KLKFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIR--CIEYSYEV 106 (323)
T ss_pred cEEEEeccchhh--hhheecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceE--EEEeeccC
Confidence 456677666521 111111111234444455444567765 367889998887665543222211 1111 234
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE-----
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK----- 678 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~----- 678 (748)
...|.||+++ .+..+|+.... .+.....+..-+++.+ .+.++|+|+.+ ..+..||..+..--
T Consensus 107 ~~vIsgsWD~-----~ik~wD~R~~~--~~~~~d~~kkVy~~~v-~g~~LvVg~~~-----r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 107 GCVISGSWDK-----TIKFWDPRNKV--VVGTFDQGKKVYCMDV-SGNRLVVGTSD-----RKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred CeEEEcccCc-----cEEEEeccccc--cccccccCceEEEEec-cCCEEEEeecC-----ceEEEEEcccccchhhhcc
Confidence 5567788854 58888887621 1112222223334433 44556666543 47888887654311
Q ss_pred --------EccCCCCCCcceEEEEECCEEEE
Q psy10286 679 --------MIASMNVMRSRVALVANMGKLWA 701 (748)
Q Consensus 679 --------~~~~~p~~r~~~~~~~~~~~l~v 701 (748)
.+.-.| .+.++.+..++|+++|
T Consensus 174 S~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 174 SSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred ccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 112233 4556666666777665
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=80.65 E-value=41 Score=35.84 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=18.5
Q ss_pred EEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 693 VANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 693 ~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+..++.+++.|+.++. |.++|+.+.+
T Consensus 285 is~DgtlLlSGd~dg~-----VcvWdi~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGK-----VCVWDIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCCCC-----EEEEecchHH
Confidence 3348999999997653 6677776654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 748 | ||||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 1e-58 | ||
| 2vpj_A | 301 | Crystal Structure Of The Kelch Domain Of Human Klhl | 4e-20 | ||
| 2dyh_A | 318 | Crystal Structure Of The Keap1 Protein In Complexed | 1e-53 | ||
| 2dyh_A | 318 | Crystal Structure Of The Keap1 Protein In Complexed | 5e-48 | ||
| 2dyh_A | 318 | Crystal Structure Of The Keap1 Protein In Complexed | 5e-25 | ||
| 1x2j_A | 316 | Structural Basis For The Defects Of Human Lung Canc | 2e-53 | ||
| 1x2j_A | 316 | Structural Basis For The Defects Of Human Lung Canc | 6e-48 | ||
| 1x2j_A | 316 | Structural Basis For The Defects Of Human Lung Canc | 5e-25 | ||
| 3vng_A | 309 | Crystal Structure Of Keap1 In Complex With Syntheti | 1e-52 | ||
| 3vng_A | 309 | Crystal Structure Of Keap1 In Complex With Syntheti | 3e-48 | ||
| 3vng_A | 309 | Crystal Structure Of Keap1 In Complex With Syntheti | 1e-24 | ||
| 1u6d_X | 308 | Crystal Structure Of The Kelch Domain Of Human Keap | 1e-52 | ||
| 1u6d_X | 308 | Crystal Structure Of The Kelch Domain Of Human Keap | 3e-48 | ||
| 1u6d_X | 308 | Crystal Structure Of The Kelch Domain Of Human Keap | 1e-24 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 4e-52 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 8e-32 | ||
| 2xn4_A | 302 | Crystal Structure Of The Kelch Domain Of Human Klhl | 4e-07 | ||
| 1zgk_A | 308 | 1.35 Angstrom Structure Of The Kelch Domain Of Keap | 2e-48 | ||
| 1zgk_A | 308 | 1.35 Angstrom Structure Of The Kelch Domain Of Keap | 1e-44 | ||
| 1zgk_A | 308 | 1.35 Angstrom Structure Of The Kelch Domain Of Keap | 2e-22 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 2e-23 | ||
| 2woz_A | 318 | The Novel Beta-Propeller Of The Btb-Kelch Protein K | 6e-09 | ||
| 3ii7_A | 306 | Crystal Structure Of The Kelch Domain Of Human Klhl | 1e-22 | ||
| 3i3n_A | 279 | Crystal Structure Of The Btb-Back Domains Of Human | 5e-17 | ||
| 4ap2_A | 297 | Crystal Structure Of The Human Klhl11-cul3 Complex | 5e-17 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 1e-14 | ||
| 4asc_A | 315 | Crystal Structure Of The Kelch Domain Of Human Kbtb | 2e-06 | ||
| 3hve_A | 256 | Structures Of Spop-Substrate Complexes: Insights In | 6e-12 | ||
| 2nn2_A | 133 | Crystal Structure Of The Btb Domain From The LrfZBT | 2e-09 | ||
| 2nn2_A | 133 | Crystal Structure Of The Btb Domain From The LrfZBT | 2e-06 | ||
| 2if5_A | 120 | Structure Of The Poz Domain Of Human Lrf, A Master | 7e-09 | ||
| 2if5_A | 120 | Structure Of The Poz Domain Of Human Lrf, A Master | 9e-06 | ||
| 2z8h_A | 138 | Structure Of Mouse Bach1 Btb Domain Length = 138 | 1e-07 | ||
| 2ihc_A | 124 | Crystal Structure Of The Bric-A-Brac (Btb) Domain O | 6e-07 | ||
| 3ga1_A | 129 | Crystal Structure Of The Human Nac1 Poz Domain Leng | 7e-07 | ||
| 3ohu_A | 125 | Crystal Structure Of The Human Bach2 Poz Domain, Fo | 1e-06 | ||
| 1r28_A | 127 | Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B | 3e-06 | ||
| 2q81_A | 119 | Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length | 1e-05 | ||
| 2q81_A | 119 | Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length | 8e-04 | ||
| 3m52_A | 117 | Crystal Structure Of The Btb Domain From The Miz-1Z | 3e-05 | ||
| 4eoz_A | 145 | Crystal Structure Of The Spop Btb Domain Complexed | 1e-04 | ||
| 3hqi_A | 312 | Structures Of Spop-Substrate Complexes: Insights In | 1e-04 | ||
| 3e4u_A | 130 | Crystal Structure Of The Wild-Type Human Bcl6 BtbPO | 2e-04 | ||
| 1cs3_A | 116 | Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN | 8e-04 | ||
| 1buo_A | 121 | Btb Domain From Plzf Length = 121 | 9e-04 |
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12 Length = 301 | Back alignment and structure |
|
| >pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318 | Back alignment and structure |
|
| >pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318 | Back alignment and structure |
|
| >pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With The N-Terminal Region Of The Nrf2 Transcription Factor Length = 318 | Back alignment and structure |
|
| >pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316 | Back alignment and structure |
|
| >pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316 | Back alignment and structure |
|
| >pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer Somatic Mutations In The Repression Activity Of Keap1 On Nrf2 Length = 316 | Back alignment and structure |
|
| >pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309 | Back alignment and structure |
|
| >pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309 | Back alignment and structure |
|
| >pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309 | Back alignment and structure |
|
| >pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302 | Back alignment and structure |
|
| >pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1 Length = 308 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1 Provides The Binding Site For Lasp-1 That Is Necessary For Pseudopodia Extension Length = 318 | Back alignment and structure |
|
| >pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306 | Back alignment and structure |
|
| >pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 | Back alignment and structure |
|
| >pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
| >pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5 Length = 315 | Back alignment and structure |
|
| >pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Gigaxoninbtb3-Box Length = 256 | Back alignment and structure |
|
| >pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133 | Back alignment and structure |
|
| >pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133 | Back alignment and structure |
|
| >pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120 | Back alignment and structure |
|
| >pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120 | Back alignment and structure |
|
| >pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain Length = 138 | Back alignment and structure |
|
| >pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human Bach1 Length = 124 | Back alignment and structure |
|
| >pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129 | Back alignment and structure |
|
| >pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I Length = 125 | Back alignment and structure |
|
| >pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 | Back alignment and structure |
|
| >pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 | Back alignment and structure |
|
| >pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119 | Back alignment and structure |
|
| >pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117 | Back alignment and structure |
|
| >pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 | Back alignment and structure |
|
| >pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 | Back alignment and structure |
|
| >pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ DOMAIN Length = 130 | Back alignment and structure |
|
| >pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM PROMELOCYTIC Leukemia Zinc Finger Oncoprotein Length = 116 | Back alignment and structure |
|
| >pdb|1BUO|A Chain A, Btb Domain From Plzf Length = 121 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-124
Identities = 109/274 (39%), Positives = 156/274 (56%), Gaps = 3/274 (1%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
A ++ +VE +D RW + R R G+ M ++A GG+NGS R+ TV+ +DP
Sbjct: 25 APKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDP 84
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
V+ W V+ M +RS +GAA LN LY GG+DG + L++VE Y ++W V M
Sbjct: 85 VKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT 144
Query: 592 HRSAGGVIAFDSYVYALGGHDGLS--IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649
RS+ GV +YA+GG+D S +VE Y+ T+EWT + M T+R GV LN
Sbjct: 145 RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN 204
Query: 650 NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS 709
N +Y GG+DG + +SVE+YDP T+ W+ +A MN+ R + A G L+ +GG DG
Sbjct: 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 710 NLPTVEVYDPSTDSWAFVAP-MCAHEGGVGVGVI 742
NL +VE Y+P+TD W V+ M GV VI
Sbjct: 265 NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI 298
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 306 bits (786), Expect = 8e-99
Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 3/250 (1%)
Query: 496 SM-LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554
SM +R+R+ + +L G + + +VE +D W++V+ + +R G +
Sbjct: 1 SMSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM 60
Query: 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGL 614
++ GG++G + TV+ Y+P KDQW V +M+ RS G + +YA+GG DG
Sbjct: 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 615 SIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQSVEMYDP 672
+ SVE Y+ K++EW V PM T+R +GV + +Y GGYD A L +VE Y+
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 673 ITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732
T+EW IA M+ RS + L+A+GG+DG +VEVYDP+T++W VA M
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 733 HEGGVGVGVI 742
GV +
Sbjct: 241 CRRNAGVCAV 250
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 2e-68
Identities = 73/234 (31%), Positives = 103/234 (44%), Gaps = 43/234 (18%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEV 481
G ++AVGG + LS+VE ++
Sbjct: 109 GLLYAVGGFDGST-GLSSVEAYNI------------------------------------ 131
Query: 482 FDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGS--ERLSTVEEFDPVRRVWNKV 539
W M+ RS VGV V+ LYA GGY+ + + LSTVE ++ W +
Sbjct: 132 ---KSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188
Query: 540 SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI 599
+ M +RS G LN+ LY GG+DG +VE Y+P + WR V M R GV
Sbjct: 189 AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248
Query: 600 AFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP-MLTKRCRLGVAALNNKI 652
A + +Y +GG DG SVE Y+P TD+WT V M T R GV ++ ++
Sbjct: 249 AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 2e-31
Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAG-DSLSTVEVFDPLVGRWQMAEEETL 458
M RR + V G ++AVGG A LSTVE ++ W E +
Sbjct: 142 MNTRRSSVGV--GV------VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE--M 191
Query: 459 SN-----AVISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMK 508
S V + L +VEV+DP W+ M+M R GV +
Sbjct: 192 STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVN 251
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRSAVGAAALNDKL 558
LY GG +GS L++VE ++P W VS M RS G ++ +L
Sbjct: 252 GLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 370 bits (952), Expect = e-123
Identities = 114/274 (41%), Positives = 151/274 (55%), Gaps = 3/274 (1%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
+ VE +DP W +++ R V + +R+Y GGY+G RLS+VE D
Sbjct: 26 QQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDY 85
Query: 532 V---RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
VW V+PM +R GA L D +YV GG+DG ++E Y+P+ DQW ++
Sbjct: 86 TADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD 145
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
MQ R G++ +Y LGG+DGL+I +SVE+YDP T WT+V PM TKR GVA L
Sbjct: 146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
N+ IYV GG+DG L SVE Y+ TD W + SM R V G+L+AI GYDG
Sbjct: 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN 265
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
S L ++E YDP DSW V M GV V+
Sbjct: 266 SLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 306 bits (785), Expect = 1e-98
Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 5/253 (1%)
Query: 494 AMSMLRSRVGVAVMKNRLYAFGGYNGSER-LSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552
+M R+R + + L GG+ + + VE++DP + W+ + + KR V +
Sbjct: 1 SMQGPRTRARLGANE-VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 553 ALNDKLYVCGGYDGVSSLNTVECYEPDKDQ---WRIVKSMQKHRSAGGVIAFDSYVYALG 609
+L+D++YV GGYDG S L++VEC + D+ W V M R G +Y G
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSG 119
Query: 610 GHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEM 669
G DG S+ERYDP D+W+ + M T R G+ + IY GGYDG L SVE
Sbjct: 120 GFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK 179
Query: 670 YDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729
YDP T W + M RS + ++ +GG+DG ++L +VE Y+ TDSW V
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239
Query: 730 MCAHEGGVGVGVI 742
M VG V+
Sbjct: 240 MTTPRCYVGATVL 252
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 251 bits (642), Expect = 1e-77
Identities = 82/263 (31%), Positives = 116/263 (44%), Gaps = 24/263 (9%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPL---VGRWQ----M 452
+ +R +A + I+ +GG LS+VE D G W M
Sbjct: 49 ITRKRRYVA--------SVSLHDRIYVIGG-YDGRSRLSSVECLDYTADEDGVWYSVAPM 99
Query: 453 AEE-ETLSNAVISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAV 506
+ + +++E +DP + +W M M R G+ V
Sbjct: 100 NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157
Query: 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDG 566
+Y GGY+G L++VE++DP W V+PM KRS G A LND +YV GG+DG
Sbjct: 158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217
Query: 567 VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626
+ L++VE Y D W V SM R G +YA+ G+DG S+ S+E YDP
Sbjct: 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277
Query: 627 TDEWTSVKPMLTKRCRLGVAALN 649
D W V M T+RC GV L
Sbjct: 278 IDSWEVVTSMGTQRCDAGVCVLR 300
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-32
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLS 459
M R + G I+ +GG + L++VE +DP G W ++
Sbjct: 146 MQTAREGAGL--VV---AS---GVIYCLGGYD-GLNILNSVEKYDPHTGHWTNVTP--MA 194
Query: 460 NA-----VISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN 509
V + LS+VE ++ W +M+ R VG V++
Sbjct: 195 TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254
Query: 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556
RLYA GY+G+ LS++E +DP+ W V+ M +R G L +
Sbjct: 255 RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 368 bits (947), Expect = e-122
Identities = 101/273 (36%), Positives = 149/273 (54%), Gaps = 4/273 (1%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEE 528
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++
Sbjct: 35 RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 94
Query: 529 FDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
++P+ W+ +PM R+ +G ++ +Y GG G N+VE YEP++D+W +V
Sbjct: 95 YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP 154
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
M R GV + +YA+GG DG + +S E Y P+ +EW + M T R GV L
Sbjct: 155 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
+N IY GGYDG L SVE YD T+ W +A M RS + + + G+++ +GGYDG
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
+ L +VE YDP TD+W+ V M + GVGV V
Sbjct: 275 TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 302 bits (775), Expect = 4e-97
Identities = 92/258 (35%), Positives = 133/258 (51%), Gaps = 6/258 (2%)
Query: 489 WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSA 548
+ + R V +Y GGY + LS +E ++P W +++ + RS
Sbjct: 6 HHHHSSGLVPRGSHAPKV-GRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSG 63
Query: 549 VGAAALNDKLYVCGGY----DGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSY 604
+ + LY GG DG + + ++CY P +QW M R+ GV D +
Sbjct: 64 LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH 123
Query: 605 VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFL 664
+YA+GG G +SVERY+P+ DEW V PMLT+R +GVA LN +Y GG+DG L
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 183
Query: 665 QSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724
S E Y P +EW+MI +MN +RS + ++A GGYDG L +VE YD T++W
Sbjct: 184 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243
Query: 725 AFVAPMCAHEGGVGVGVI 742
FVAPM +G+ V
Sbjct: 244 TFVAPMKHRRSALGITVH 261
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308 | Back alignment and structure |
|---|
Score = 226 bits (578), Expect = 3e-68
Identities = 75/225 (33%), Positives = 105/225 (46%), Gaps = 40/225 (17%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEV 481
GHI+AVGG ++VE ++P
Sbjct: 122 GHIYAVGGSHGCI-HHNSVERYEP------------------------------------ 144
Query: 482 FDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP 541
W + M R VGVAV+ LYA GG++G+ RL++ E + P R W ++
Sbjct: 145 ---ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA 201
Query: 542 MCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF 601
M RS G L++ +Y GGYDG LN+VE Y+ + + W V M+ RSA G+
Sbjct: 202 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 261
Query: 602 DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA 646
+Y LGG+DG + DSVE YDP TD W+ V M + R +GVA
Sbjct: 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 306
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 360 bits (925), Expect = e-119
Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 7/279 (2%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV 532
G + F+P W R N +Y GG + ++ ++ V
Sbjct: 20 GSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLF-PIKRMDCYNVV 78
Query: 533 RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQK 591
+ W R ++ A A K+Y GG + G S+L ECY+ + W SM
Sbjct: 79 KDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138
Query: 592 HRSAGGVIAFDSYVYALGGHDGLS----IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA 647
R + G++ + +Y GG G + + +S E YDP T+ WT + PM+ R G+
Sbjct: 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF 198
Query: 648 LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDG 707
+ +KI+ GG +G L +VE YD +EWKM++ M V A ++ + G+ G
Sbjct: 199 VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG 258
Query: 708 VSNLPTVEVYDPSTDSWAFVAPMCAHEGG-VGVGVIPIC 745
V L + Y+ TD W + + A + V+ C
Sbjct: 259 VGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDTC 297
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 290 bits (744), Expect = 1e-92
Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 10/250 (4%)
Query: 498 LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDK 557
+ +R R+ FGG + + F+P W + KR ++
Sbjct: 2 MGTRPRRKKHDYRIALFGGS----QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV 57
Query: 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHD-GLSI 616
+Y+ GG + ++CY KD W R + A + +Y GG + G S
Sbjct: 58 VYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA 116
Query: 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF----LQSVEMYDP 672
E YD +T+ W + MLT+RC G+ N IYVCGG G L S E+YDP
Sbjct: 117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176
Query: 673 ITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732
T+ W + M R LV K++A+GG +G+ L VE YD + W V+PM
Sbjct: 177 ATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236
Query: 733 HEGGVGVGVI 742
V +
Sbjct: 237 KGVTVKCAAV 246
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 6e-58
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 15/204 (7%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAE---EETLSNAVISTKSCL--------- 469
G I+ GG +L E +D W + S+ ++ +
Sbjct: 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN 161
Query: 470 TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEF 529
+G L++ EV+DP W M R G+ +K++++A GG NG L VE +
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221
Query: 530 DPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589
D W VSPM +K V AA+ +YV G+ GV L + Y + D+W +
Sbjct: 222 DIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKV 281
Query: 590 QKHRSAGGVIAFDSYVYALGGHDG 613
+ +I V G ++
Sbjct: 282 RAFPVTSCLIC---VVDTCGANEE 302
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 5/105 (4%)
Query: 638 TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697
+ R + +I + GG QS ++P W I R A V
Sbjct: 1 SMGTRPRRKKHDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN 56
Query: 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
++ +GG + ++ Y+ DSW +
Sbjct: 57 VVYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 345 bits (886), Expect = e-113
Identities = 80/346 (23%), Positives = 130/346 (37%), Gaps = 64/346 (18%)
Query: 412 TTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTK 471
PR +V I V + +DP+
Sbjct: 6 DIPRHGMFVKDLILLVND--------TAAVAYDPMENEC--------------------- 36
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSER------LST 525
+ A A + R+ + +N++Y GG E S
Sbjct: 37 -----------------YLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSY 79
Query: 526 VEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD--GVSSLNTVECYEPDKDQW 583
+ D V W + P+ R G ++DK+YV G D +SL++V CY+P +W
Sbjct: 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139
Query: 584 RIVKSMQKHRSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDPKTDEWTSVKPMLTKRCR 642
VK++ VI+ + +Y LGG D + V Y+PK +W + PM T R
Sbjct: 140 SEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM 199
Query: 643 LGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAI 702
GVA KI + GG SVE +D T++W+++ RS ++LV+ G L+AI
Sbjct: 200 FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAI 259
Query: 703 GGYDGV---------SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739
GG+ + + + + Y+ WA + + G
Sbjct: 260 GGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASC 305
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-56
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 27/230 (11%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGD-SLSTVEVFDPLVGRWQMA---EE 455
+P R L V I+ V G + SL +V +DP+ +W
Sbjct: 96 LPSARCLFG--------LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI 147
Query: 456 ETLSNAVISTKSCL------TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN 509
+ + VIS + T + V +++P G W+ M RS GVA+ K
Sbjct: 148 KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG 207
Query: 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSS 569
++ GG ++VE FD W ++ +RS++ +L LY GG+ +
Sbjct: 208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQL 267
Query: 570 ---------LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG 610
+N + YE DK +W + ++ S +A ++ L
Sbjct: 268 ESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSK 317
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 332 bits (854), Expect = e-108
Identities = 65/285 (22%), Positives = 110/285 (38%), Gaps = 20/285 (7%)
Query: 475 SLSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMKNRLYAFGGYNGSERL------STVE 527
S +DP A + ++ V + +N+++ GG +E +
Sbjct: 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70
Query: 528 EFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY---DGVSSLNTVECYEPDKDQWR 584
+FD + W + P+ R G + +YV GG DG L++V CY+ +W
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 585 IVKSMQKHRSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRL 643
+ V++ VY +GG + + YDPK EW + PM T R
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190
Query: 644 GVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIG 703
G + +I V G S E+Y ++W + RS ++LV+ +G L+AIG
Sbjct: 191 GATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250
Query: 704 GYDGV---------SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739
G+ + + L + Y+ W V A+ G
Sbjct: 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATF 295
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = 1e-97
Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 38/321 (11%)
Query: 419 YVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE-----------TLSNAVI---- 463
++ IF + +DP A T N V
Sbjct: 2 FLQDLIFMISE--------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGG 53
Query: 464 STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN---GS 520
+ K + FD L W + R G+ N +Y GG G
Sbjct: 54 LFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGE 113
Query: 521 ERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY-DGVSSLNTVECYEPD 579
L +V +D + W + P+ + + D +YV GG LN + Y+P
Sbjct: 114 RCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173
Query: 580 KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK 639
K +W+ + MQ RS G D + G + S E Y ++W + +
Sbjct: 174 KFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE 233
Query: 640 RCRLGVAALNNKIYVCGGYDG---------AIFLQSVEMYDPITDEWKMIASMNVMRSRV 690
R L + +L +Y GG+ L + Y+ +W+ + +
Sbjct: 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGA 293
Query: 691 ALVANMGKLWAIGGYDGVSNL 711
+ +L + NL
Sbjct: 294 TFLP--VRLNVLRLTKMAENL 312
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 4e-81
Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 18/247 (7%)
Query: 507 MKNRLYAFGGYNGSERLSTVEEFDPV-RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD 565
+++ ++ +DP + ++ V ++++V GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 566 GVSSL------NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGH---DGLSI 616
++ +W + + R G+ + +Y +GG DG
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGY-DGAIFLQSVEMYDPITD 675
DSV YD + +W P+ V + + +YV GG L + +YDP
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 676 EWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEG 735
EWK +A M RS + G++ G + EVY + + WA
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 736 GVGVGVI 742
+ + +
Sbjct: 236 SLSLVSL 242
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 3e-58
Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 61/279 (21%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGD--SLSTVEVFDPLVGRWQMA---E 454
+P R L + I+ VGG L +V +D L +W +
Sbjct: 85 LPSPRCLFG--------LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP 136
Query: 455 EETLSNAVISTKSCL------TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMK 508
+ V+S + L+ + V+DP W+ M RS G V
Sbjct: 137 YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
R+ G + S+ E + W +RS++ +L LY GG+ +
Sbjct: 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLE 256
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
+ + G + + + RY+ +
Sbjct: 257 TES--------------------------------------GELVPTELNDIWRYNEEEK 278
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQ 665
+W V + G L ++ V A ++ Q
Sbjct: 279 KWEGVLREI--AYAAGATFLPVRLNVLRLTKMAENLYFQ 315
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 | Back alignment and structure |
|---|
Score = 309 bits (794), Expect = e-100
Identities = 77/360 (21%), Positives = 129/360 (35%), Gaps = 94/360 (26%)
Query: 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTI---KVDDQSFTCHRIVLAATIPYFQAMF 104
E F+ S+ E RRQG CD+T+ + F HR VLAA YF +
Sbjct: 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLL 65
Query: 105 TSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALI 164
+ +ES+
Sbjct: 66 ----------------------------------SGQFSESRSGR--------------- 76
Query: 165 NFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAME 224
V + +E
Sbjct: 77 -------VEMRK-----------------------------------WSSEPGPEPDTVE 94
Query: 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL 284
A+I + Y+GR+ + + +V ++ +A + ++ + C +FLKK+ H +N + I A
Sbjct: 95 AVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 154
Query: 285 NCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK 344
QL+ A +++ FH+V +EF L + + D + E+ + SEE +FE V++WV+
Sbjct: 155 TLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ 214
Query: 345 HNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERR 404
NA ER L +RL + P YL V E L+ ++ C LV +A + H +
Sbjct: 215 RNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAEN 274
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 | Back alignment and structure |
|---|
Score = 275 bits (705), Expect = 2e-87
Identities = 54/355 (15%), Positives = 123/355 (34%), Gaps = 101/355 (28%)
Query: 45 TMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMF 104
+M E ++ + R + + CD + +D + + +LAA PY +
Sbjct: 2 SMAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 61
Query: 105 TSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALI 164
+ + +I ++GI + M ++
Sbjct: 62 NYNPP--------------------------------KDDGSTYKIELEGISVMVMREIL 89
Query: 165 NFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAME 224
++++SG++ ++ +Q ++ A L + + C +FL+ N +
Sbjct: 90 DYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDF------- 142
Query: 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL 284
A + V ++L+ F
Sbjct: 143 ------------------------ALHYCLHHVHYLATEYLETHF--------------- 163
Query: 285 NCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK 344
+VS ++EF+ L ++ +++ +L++ +E VFEAV+RW+
Sbjct: 164 -----------------RDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIA 206
Query: 345 HNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHL 399
H+ R + +++A+ + L YL +++ E L+ R++V E + L
Sbjct: 207 HDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLV------REIVKECSNIPL 255
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 6e-57
Identities = 41/290 (14%), Positives = 80/290 (27%), Gaps = 45/290 (15%)
Query: 473 GDSLSTVEVFD--PLVGRWQMAEAM-SMLRSRVGVAVMKNRLYAFGGYN-----GSERLS 524
G + + D +W A R + A + LY FGG ++ +
Sbjct: 27 GSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFN 86
Query: 525 TVEEFDPVRRVWNKV-SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW 583
V +++P W K+ S + N K YV GG + E
Sbjct: 87 DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDS 146
Query: 584 RIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-LTKRCR 642
+ + H Y + + +DP T +W+
Sbjct: 147 TAIDKINAH-------------YFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG 193
Query: 643 LGVAALNNKIYVCGGYDG-AIFLQSVEMY--DPITDEWKMIASMNVMRSRVALVANM--G 697
V +K ++ G + +V +W +A ++ A +
Sbjct: 194 AAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253
Query: 698 KLWAIGG-----------------YDGVSNLPTVEVYDPSTDSWAFVAPM 730
L GG ++G+ + +++ W +
Sbjct: 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 4e-53
Identities = 38/341 (11%), Positives = 86/341 (25%), Gaps = 55/341 (16%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQ----MAEEETLSNAVISTKSCL-------- 469
++ G AG + ++ +W L
Sbjct: 20 DTVYIGLG--SAGTAWYKLD-TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76
Query: 470 --TKAGDSLSTVEVFDPLVGRW-QMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTV 526
+ V ++P W ++ M + V + Y GG N +
Sbjct: 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYF 136
Query: 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586
E+ + + + + + Y + + ++P QW
Sbjct: 137 EDLNEAGKDSTAIDKI-------------NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA 183
Query: 587 KSM-QKHRSAGGVIAFDSYVYALGGHDGLSIF-DSVERY--DPKTDEWTSVKPMLTKRCR 642
+ V+ + + G + D+V +W + P+ +
Sbjct: 184 GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243
Query: 643 LGVAA--LNNKIYVCGG-----------------YDGAIFLQSVEMYDPITDEWKMIASM 683
G A N+ + GG ++G S +++ +W +
Sbjct: 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303
Query: 684 NVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724
+ R+ + L IGG + +
Sbjct: 304 SQGRAYGVSLPWNNSLLIIGGETA-GGKAVTDSVLITVKDN 343
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 1e-51
Identities = 42/254 (16%), Positives = 75/254 (29%), Gaps = 26/254 (10%)
Query: 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-CFKRSAVGAAALNDK 557
A+ + +Y G G+ + + W ++ R +A ++
Sbjct: 10 FKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQATSAFIDGN 67
Query: 558 LYVCGGYD-----GVSSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIAFDSYVYALGGH 611
LYV GG N V Y P + W + S + + Y GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127
Query: 612 DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYD 671
+ E + + T++ + N Y + F + + +D
Sbjct: 128 NQNIFNGYFEDLNEAGKDSTAIDKI-------------NAHYFDKKAEDYFFNKFLLSFD 174
Query: 672 PITDEWKMIASMN-VMRSRVALVANMGKLWAIGGYDG-VSNLPTVEVY--DPSTDSWAFV 727
P T +W + A+V K W I G V + W +
Sbjct: 175 PSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL 234
Query: 728 APMCAHEGGVGVGV 741
AP+ + +G G
Sbjct: 235 APVSSPDGVAGGFA 248
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-35
Identities = 36/313 (11%), Positives = 77/313 (24%), Gaps = 55/313 (17%)
Query: 413 TPRRCNYVM----GHIFAVGGLTKAGDS----LSTVEVFDPLVGRWQ----MAEEETLSN 460
R G+++ GG+ K + + V ++P W A +
Sbjct: 53 GGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH 112
Query: 461 AVISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFG 515
E + + ++
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------Y 164
Query: 516 GYNGSERLSTVEEFDPVRRVWNKVSPMCFK-RSAVGAAALNDKLYVCGGYDG-VSSLNTV 573
+N + FDP + W+ + + DK ++ G + V
Sbjct: 165 FFN-----KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAV 219
Query: 574 ECYEPDK--DQWRIVKSMQKHRSAGGVIAF--DSYVYALGG-----------------HD 612
+ +W + + G A + + GG H+
Sbjct: 220 FELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279
Query: 613 GLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYD-GAIFLQSVEMYD 671
GL S + + +W + R NN + + GG G + +
Sbjct: 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLIT 339
Query: 672 PITDEWKMIASMN 684
+ D + ++
Sbjct: 340 -VKDNKVTVQNLE 351
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 4e-33
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 588 SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-LTKRCRLGVA 646
+G + VY G G + + K +WT++ R + A
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQATSA 62
Query: 647 ALNNKIYVCGGYD-----GAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKLW 700
++ +YV GG V Y+P T+ W + S + + + GK +
Sbjct: 63 FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAY 122
Query: 701 AIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
GG + E + + + + AH
Sbjct: 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 3e-19
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYD--PITDEWKMIASM-NVMR 687
+ + A N+ +Y+ G G + D +W +A+ R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPR 56
Query: 688 SRVALVANMGKLWAIGGYDGVSN-----LPTVEVYDPSTDSWAFVAPM 730
+ G L+ GG S V Y+P T+SW +
Sbjct: 57 DQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH 104
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 5e-47
Identities = 22/164 (13%), Positives = 60/164 (36%), Gaps = 32/164 (19%)
Query: 40 TSTTSTMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPY 99
T + + + ++ + R + + CD + +D + + +LAA PY
Sbjct: 13 LGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPY 72
Query: 100 FQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVA 159
+ + + + +I ++GI +
Sbjct: 73 IRTKLNYNPPKD--------------------------------DGSTYKIELEGISVMV 100
Query: 160 MEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203
M ++++++SG++ ++ +Q ++ A L + + C +FL+
Sbjct: 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 5e-16
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
M ++++ +SG++ ++ +Q ++ A L + + C +FL+
Sbjct: 100 VMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-45
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 35/167 (20%)
Query: 43 TSTMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQA 102
+ + ++ + + + R++ LCDVT+ V+ Q F HR VLAA YF +
Sbjct: 5 SVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHS 64
Query: 103 MFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEA 162
+++ + + E
Sbjct: 65 RIVG-----------------------------------QTDAELTVTLPEEVTVKGFEP 89
Query: 163 LINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN 209
LI F Y+ ++ + NV + FL + + ++C FLK +F +
Sbjct: 90 LIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDS 136
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 8e-18
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN 272
+ E LI FAY+ ++ + NV + FL + + ++C FLK +F +
Sbjct: 85 KGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDS 136
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 3e-44
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 50 LVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMA 109
++ + + + R++ LCDVTI V+ Q F HR VLAA YF +
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--- 61
Query: 110 ESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYS 169
A+ + + + E LI F Y+
Sbjct: 62 --------------------------------QADGELNITLPEEVTVKGFEPLIQFAYT 89
Query: 170 GRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203
++ + +NV + FL + + ++C FLK
Sbjct: 90 AKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-16
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ E LI FAY+ ++ + +NV + FL + + ++C FLK
Sbjct: 78 KGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 5e-44
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 34/140 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ +R + L DV I V + F H+ VL A F ++
Sbjct: 20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSI--------------------- 58
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
FT + + I+ L++F+Y+ R+ + N+ ++M
Sbjct: 59 -------------FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMA 105
Query: 185 VASFLQMQKVADACADFLKK 204
A +LQM+ V D C F+K
Sbjct: 106 TAMYLQMEHVVDTCRKFIKA 125
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-16
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267
L++F Y+ R+ + N+ ++M A +LQM+ V D C F+K
Sbjct: 79 EGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 6e-44
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 34/141 (24%)
Query: 62 FPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGI 121
+ E R QG LCDV I V+ + F HR VLAA YF+ +
Sbjct: 13 LSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKL------------------ 54
Query: 122 DAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQS 181
FTS +Q + + A A+ AL++F Y+ +T+ + NV
Sbjct: 55 ----------------FTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGD 98
Query: 182 LMVVASFLQMQKVADACADFL 202
++ A L++ V+ CAD L
Sbjct: 99 ILSAARLLEIPAVSHVCADLL 119
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-15
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265
A+ AL++FAY+ +T+ + NV ++ A L++ V+ CAD L
Sbjct: 75 EALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 4e-43
Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 35/153 (22%)
Query: 50 LVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMA 109
V++ + + + R++ LCDVT+ V+ + F HR VLAA YF
Sbjct: 8 YVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTK 67
Query: 110 ESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYS 169
+ + A L+ F Y+
Sbjct: 68 NDLV-----------------------------------VSLPEEVTARGFGPLLQFAYT 92
Query: 170 GRVTIHSQNVQSLMVVASFLQMQKVADACADFL 202
++ + +N++ ++ A FL+M + D+C FL
Sbjct: 93 AKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-16
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265
R L+ FAY+ ++ + +N++ ++ A FL+M + D+C FL
Sbjct: 81 RGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-42
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 38/148 (25%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R +G+ CD T+ V F H VLA +FQ ++ S
Sbjct: 16 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGS------------- 62
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + A L++F Y+G + + S N +++
Sbjct: 63 -------------------------VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLL 97
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVL 212
A L++ + + C F +
Sbjct: 98 AAKELRVPEAVELCQSFQPQTSVGQAQS 125
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-22
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
L++F Y+G + + S N +++ A L++ + + C F + G+ Q
Sbjct: 71 EIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQS 130
Query: 281 ADT 283
+
Sbjct: 131 GPS 133
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 2e-41
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 39/155 (25%)
Query: 49 CLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDM 108
+ Q + ++R G LCDV I VD Q F HR VLA T F+ +F +
Sbjct: 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS 62
Query: 109 AESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVY 168
+ T+ + + ++ + Y
Sbjct: 63 ---------------------------------------QHYTLDFLSPKTFQQILEYAY 83
Query: 169 SGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203
+ + ++++ L+ A L+++ + + C L+
Sbjct: 84 TATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-15
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ + ++ +AY+ + ++++ L+ A L+++ + + C L+
Sbjct: 73 KTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-40
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 37/157 (23%)
Query: 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSD 107
+ L + + + + E R QG CDV++ V +F HR VLAA+ YF+ +F +
Sbjct: 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS 66
Query: 108 MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFV 167
+ + + + + +++F
Sbjct: 67 RSAVVE-------------------------------------LPAAVQPQSFQQILSFC 89
Query: 168 YSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 204
Y+GR++++ + LM A FLQ+Q++ + +F K
Sbjct: 90 YTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 9e-17
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 197 ACADFLKKRFH--PNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQM 254
A + + + F+ + V++ ++ + +++F Y+GR++++ + LM A FLQ+
Sbjct: 54 ASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQI 113
Query: 255 QKVADACADFLKK 267
Q++ + +F K
Sbjct: 114 QEIMEKGTEFFLK 126
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-40
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 36/139 (25%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R G LCD TI + + F HR VLA+ YF A++ S
Sbjct: 13 LNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS---------------- 56
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + A + L+ F+Y+G + + S NV+ +
Sbjct: 57 --------------------ENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQ 96
Query: 185 VASFLQMQKVADACADFLK 203
A +L++++V C ++
Sbjct: 97 AADYLKVEEVVTKCKIKME 115
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 2e-15
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ L+ F Y+G + + S NV+ + A +L++++V C ++
Sbjct: 70 DGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 6e-40
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 38/140 (27%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R +G+ CD T+ V F H VLA +FQ+++ S
Sbjct: 15 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS------------- 61
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + A L++F Y+G + + S N +++
Sbjct: 62 -------------------------VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLL 96
Query: 185 VASFLQMQKVADACADFLKK 204
A L++ + + C F K
Sbjct: 97 AARELRVPEAVELCQSFKPK 116
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 3e-16
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267
L++F Y+G + + S N +++ A L++ + + C F K
Sbjct: 70 EIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-39
Identities = 28/142 (19%), Positives = 38/142 (26%), Gaps = 43/142 (30%)
Query: 64 VMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDA 123
V R + LCD I V Q F H +VLA
Sbjct: 20 VQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ------------------ 61
Query: 124 VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLM 183
+GI L+NFVY V + ++ L
Sbjct: 62 -------------------------WALGEGISPSTFAQLLNFVYGESVELQPGELRPLQ 96
Query: 184 VVASFLQMQKVADACADFLKKR 205
A L +Q + +AC R
Sbjct: 97 EAARALGVQSLEEACWRARGDR 118
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 3e-17
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 197 ACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK 256
+ L +R S L+NF Y V + ++ L A L +Q
Sbjct: 51 GVSQQLGRRGQWALGEG----ISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQS 106
Query: 257 VADACADFLKKR 268
+ +AC R
Sbjct: 107 LEEACWRARGDR 118
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 5e-38
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 39/139 (28%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R+ G LCD T VD F H+ VLAA YF+ +F
Sbjct: 18 LNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD------------------ 59
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
++ + + +A + ++ F+Y+ ++++ +NV ++
Sbjct: 60 ---------------------QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLA 98
Query: 185 VASFLQMQKVADACADFLK 203
VA+FLQMQ + AC
Sbjct: 99 VATFLQMQDIITACHALKS 117
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 4e-15
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ ++ F Y+ ++++ +NV ++ VA+FLQMQ + AC
Sbjct: 72 AGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 6e-38
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 37/160 (23%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + + D + V Q F H+ +LAA P F AMF +M ESK+ + + ++
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 75
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + ++ F+Y+G+ + L+
Sbjct: 76 V----------------------------------FKEMMCFIYTGKAPNLDKMADDLLA 101
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVLDYYVL---FSCR 221
A ++++ C D L N + +L S
Sbjct: 102 AADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 141
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 4e-19
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
+ ++ F Y+G+ + L+ A ++++ C D L N I
Sbjct: 75 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 134
Query: 281 ADTLNCLQL 289
AD + QL
Sbjct: 135 ADLHSADQL 143
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 2e-37
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 42/188 (22%)
Query: 37 SFVTSTTSTMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAAT 96
S + +TM+ V + L + + + + D + V Q F H+ +LAA
Sbjct: 2 SGGSGGQNTMNMVKVPEC-RLADE----LGGLWENSRFTDCCLCVAGQEFQAHKAILAAR 56
Query: 97 IPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGID 156
P F AM F +M ESK+ + + ++
Sbjct: 57 SPVFSAM----------------------------------FEHEMEESKKNRVEINDVE 82
Query: 157 AVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYV 216
+ ++ F+Y+G+ + L+ A ++++ C D L N + +
Sbjct: 83 PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142
Query: 217 L---FSCR 221
L S
Sbjct: 143 LADLHSAD 150
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 2e-24
Identities = 16/88 (18%), Positives = 33/88 (37%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
+ ++ F Y+G+ + L+ A ++++ C D L N I
Sbjct: 84 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 143
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSD 308
AD + QL A ++ + +V +
Sbjct: 144 ADLHSADQLKTQAVDFINYHATDVLETS 171
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 5e-37
Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 39/141 (27%)
Query: 69 RRQGKLCDVTIKV----DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ DV V ++ H+ VLA F AMF D+AE K
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKS----------- 51
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
EI + ++ A L+ ++YS + + + V + +
Sbjct: 52 ------------------------EIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLY 87
Query: 185 VASFLQMQKVADACADFLKKR 205
A + +A AC +FL+
Sbjct: 88 AAKKYIVPALAKACVNFLETS 108
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-13
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 268
A L+ + YS + + + V + + A + +A AC +FL+
Sbjct: 62 AFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETS 108
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-33
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 264 FLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVK 323
N L + AD + +L AA + + ++ ++EF+ L + DI+
Sbjct: 3 SGSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62
Query: 324 RSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPH 369
+ EA+ W+ N ER L +++ + H
Sbjct: 63 DGVP---CSQNPTEAIEAWINFNKEEREAFAESLRTSLKEIGENVH 105
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-30
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 40/152 (26%)
Query: 46 MDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFT 105
+ + + + E R G CDVT+ V+D+ F H+ +L+A+ YF +F+
Sbjct: 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFS 62
Query: 106 SDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALIN 165
+ + + I A ++N
Sbjct: 63 V---------------------------------------AGQVVELSFIRAEIFAEILN 83
Query: 166 FVYSGRVTIHSQ-NVQSLMVVASFLQMQKVAD 196
++YS ++ + L+ L ++ +A
Sbjct: 84 YIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 222 AMEALINFAYSGRVTIHSQ-NVQSLMVVASFLQMQKVAD 259
++N+ YS ++ + L+ L ++ +A
Sbjct: 77 IFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 38/172 (22%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + + D + V Q F H+ +LAA P F AM
Sbjct: 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM--------------------- 203
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
F +M ESK+ + + ++ + ++ F+Y+G+ + L+
Sbjct: 204 -------------FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLA 250
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVLDYYVL---FSCRAM-EALINFAYS 232
A ++++ C D L N + +L S + ++F
Sbjct: 251 AADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINY 302
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 125 bits (313), Expect = 6e-30
Identities = 45/316 (14%), Positives = 101/316 (31%), Gaps = 40/316 (12%)
Query: 459 SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN-RLYAFGG- 516
++ + G+ ++D W M + R A M + R++ GG
Sbjct: 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS 306
Query: 517 YNGSERLSTVEEFDPVRRVWNKVSPMCFKR----SAVGAAALNDKLYVCGGYDGV----- 567
++G E + P + W + G ++ ++ G G
Sbjct: 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG 366
Query: 568 SSLNTVECYEPDKDQWRIVKSMQKHRS------AGGVIAFDSY---VYALGG------HD 612
S Y + Q +R G + +D+ + GG D
Sbjct: 367 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426
Query: 613 GLSIFDSVERYDPKTDEWT--SVKPMLTKRCRLGVAALNN-KIYVCGG------YDGAIF 663
+ + +P T T + + R L + ++ GG ++ +
Sbjct: 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486
Query: 664 LQSVEMYDPITDEWKMIASMNVMRSR--VALVANMGKLWAIGG---YDGVSNLPTVEVYD 718
+ + E+Y P D + +++R ++L+ G+++ GG D +N +++
Sbjct: 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT 546
Query: 719 PSTDSWAFVAPMCAHE 734
P+ + +
Sbjct: 547 PNYLYNSNGNLATRPK 562
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 52/368 (14%), Positives = 103/368 (27%), Gaps = 57/368 (15%)
Query: 412 TTPRRCNYVMGHIFAVGG--LTKAGDSLSTVEVFDPLVGRW----QMAEE------ETLS 459
T + + G G + G+ ++D W M T+S
Sbjct: 237 TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 296
Query: 460 NAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRV----GVAVMKNRLYAFG 515
+ + T G EV+ P W + G+ N + FG
Sbjct: 297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 356
Query: 516 GYNGSE-----RLSTVEEFDPVRRVWNK---------VSPMCFKRSAVGAAALNDKLYVC 561
GS + + V+P +AV A+ K+
Sbjct: 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416
Query: 562 GG------YDGVSSLNTVECYEP--DKDQWRIVKSMQKHRSAG-GVIAFDSYVYALGGH- 611
GG D ++ + + EP + + R+ V+ D + GG
Sbjct: 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476
Query: 612 -----DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGG---YDGA 661
+ + + E Y P+ D + P R ++ L + +++ GG D
Sbjct: 477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 536
Query: 662 IFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV---SNLPTVEVYD 718
+++ P + + + +GG + S++ +
Sbjct: 537 TNHFDAQIFTPNYLYNSNGNLATRPK----ITRTSTQSVKVGGRITISTDSSISKASLIR 592
Query: 719 PSTDSWAF 726
T +
Sbjct: 593 YGTATHTV 600
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656 | Back alignment and structure |
|---|
Score = 86.6 bits (213), Expect = 1e-17
Identities = 35/272 (12%), Positives = 80/272 (29%), Gaps = 15/272 (5%)
Query: 470 TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEF 529
+ DS + F+ R+ A++ + ++ + ++ Y +
Sbjct: 121 SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLGRWGP 180
Query: 530 DPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589
+ + + V + G G++ ++ + + +
Sbjct: 181 TIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240
Query: 590 QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL- 648
G + + + GG+D YD +D W M R A +
Sbjct: 241 HDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 296
Query: 649 NNKIYVCGG-YDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA----LVANMGKLWAIG 703
+ +++ GG + G +F ++ E+Y P + W + + V A L + W G
Sbjct: 297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 356
Query: 704 GYDGV-----SNLPTVEVYDPSTDSWAFVAPM 730
G + Y +
Sbjct: 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 5e-22
Identities = 48/356 (13%), Positives = 108/356 (30%), Gaps = 36/356 (10%)
Query: 382 RSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVE 441
+ + DE +FHL L ++ + D +
Sbjct: 321 KKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLL 380
Query: 442 VFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSR 501
+ + R + ++ S + + L +D + + + + +R
Sbjct: 381 ECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR 440
Query: 502 VG---VAVMKN-RLYAFGGYNGSER-LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556
+ + +N +L GG + LS FD R W+ + + R A +L D
Sbjct: 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD 500
Query: 557 -KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG--------GVIAFDSYVYA 607
+ + GG + Y ++ ++ V + ++ +
Sbjct: 501 GNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG 557
Query: 608 LGGHDGLSIFDSVERYDPKTDEWT-------SVKPMLTKRCRLGVAAL-NNKIYVCGGYD 659
G D ++ D + + T ++ L +R + + K+ + GG
Sbjct: 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS 617
Query: 660 GAIFL---QSVEMYDPITDEWKMIASMNVMRSRV--------ALVANMGKLWAIGG 704
+ S+ DP+++ I + + +MG + IGG
Sbjct: 618 PSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 6e-22
Identities = 49/367 (13%), Positives = 105/367 (28%), Gaps = 53/367 (14%)
Query: 339 VMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFH 398
+ + + L HY+ + +
Sbjct: 312 LWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINL 371
Query: 399 LMPERRFLLAGEKTTPRRCNYVM---GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE 455
+ E LL E R+ V +F +GG ++ + + M
Sbjct: 372 TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSN--PYRVNEILQLSIHYDKIDMKNI 429
Query: 456 ETLSNAVISTKSC-----------------LTKAGDSLSTVEVFDPLVGRWQMAEAMSML 498
E S+ V + C LS +FD W M +++S
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489
Query: 499 RSR-VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA---- 553
R R ++ + GG + ++ ++ V+P +A
Sbjct: 490 RFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF 546
Query: 554 ---LNDKLYVCGGYDGVSSLN-TVECYEPDKD----QWRIVKSMQ----KHRSAGGVIAF 601
+ + GG+ ++++ ++ D + ++K +Q + +
Sbjct: 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606
Query: 602 DSYVYALGGHDGLSIF---DSVERYDPKTDEWTSVKPMLTKR-----CRLG---VAALNN 650
+ +GG +F +S+ DP ++ TS+ G V+
Sbjct: 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMG 666
Query: 651 KIYVCGG 657
I++ GG
Sbjct: 667 TIHIIGG 673
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 97.1 bits (241), Expect = 5e-21
Identities = 43/265 (16%), Positives = 87/265 (32%), Gaps = 39/265 (14%)
Query: 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV------RRVWNKVSPMCFKRSAVGAA 552
R V V N ++ GG N R++ + + + + S + R
Sbjct: 388 RKFGDVDVAGNDVFYMGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT 446
Query: 553 AL--NDKLYVCGGYDGVSS-LNTVECYEPDKDQWRIVKSMQKHR---SAGGVIAFDSYVY 606
+ N++L + GG L+ ++ +W ++KS+ R SA D V
Sbjct: 447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSA--CSLPDGNVL 504
Query: 607 ALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA-------LNNKIYVCGGY- 658
LGG ++ Y+ + + V P V+A I + GG+
Sbjct: 505 ILGGVTE---GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM 561
Query: 659 DGAIFLQSVEMY----DPITDEWKMIASMNVMRSR-----VALVANMGKLWAIGGYDGVS 709
D ++ + T+ +I + + + + KL +GG
Sbjct: 562 DQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP-RKLLIVGGTSPSG 620
Query: 710 NLP---TVEVYDPSTDSWAFVAPMC 731
++ DP +++ +
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISR 645
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 1e-16
Identities = 40/327 (12%), Positives = 98/327 (29%), Gaps = 28/327 (8%)
Query: 421 MGHIFA---VGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLS 477
F+ + + L +V ++ + + Q + + + L ++ D +
Sbjct: 261 PFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLWESADEAT 320
Query: 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN 537
E+ + ++ E V + +AF +R +
Sbjct: 321 KKEL-LKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQL 379
Query: 538 KVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK------SMQK 591
R + ++ GG + +N + D+ + +
Sbjct: 380 LECECPINRKFGDVDVAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPV 438
Query: 592 HRS--AGGVIAFDSYVYALGGHDG-LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
R I+ ++ + +GG +D KT EW+ +K + R R +L
Sbjct: 439 ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL 498
Query: 649 -NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR-------VALVANMGKLW 700
+ + + GG ++ +Y+ + +K + + + +
Sbjct: 499 PDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555
Query: 701 AIGGYDG---VSNLPTVEVYDPSTDSW 724
GG+ VS+ + YD +
Sbjct: 556 LGGGFMDQTTVSDKAIIFKYDAENATE 582
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 2e-13
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query: 588 SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC----RL 643
+R G V + V+ +GG + + + + D+ ++ R+
Sbjct: 383 ECPINRKFGDVDVAGNDVFYMGGSNPYR-VNEILQLSIHYDKIDMKNIEVSSSEVPVARM 441
Query: 644 GVAA----LNNKIYVCGGYDG-AIFLQSVEMYDPITDEWKMIASMNVMRSR--VALVANM 696
NN++ + GG L ++D T EW MI S++ R R + +
Sbjct: 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD- 500
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
G + +GG + +Y+ + + + V P
Sbjct: 501 GNVLILGGVTEGPAM---LLYNVTEEIFKDVTPK 531
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 16/161 (9%)
Query: 581 DQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640
D+ H + + + G S+ + DE +
Sbjct: 331 DELEEFHLFCHHYVLCHATNYKEFAF----TQGFLFDRSISEINLTVDEDYQLLECECPI 386
Query: 641 CRLG--VAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI------ASMNVMRSR--V 690
R V N ++ GG + + + D+ M + + V R
Sbjct: 387 NRKFGDVDVAGNDVFYMGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTF 445
Query: 691 ALVANMGKLWAIGGYDGVSN-LPTVEVYDPSTDSWAFVAPM 730
++ +L IGG L ++D T W+ + +
Sbjct: 446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL 486
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 7e-09
Identities = 73/599 (12%), Positives = 164/599 (27%), Gaps = 197/599 (32%)
Query: 80 KVDDQSFTCHRIVLAATIPYFQAMFTSDM-----AESKQREITMQGIDAVIVLAATIPYF 134
+ + + I + F+ F + + + ++ + ID +I+ +
Sbjct: 10 ETGEHQYQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 135 QAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASF------ 188
+F SKQ E+ + ++ V + F+ S I ++ Q M+ +
Sbjct: 65 LRLF--WTLLSKQEEMVQKFVEEV-LRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDR 118
Query: 189 --------------------------LQMQ--------------K---VADACADFLKKR 205
L+++ K D C + +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 206 FHPNNVLDYYVLFS-CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADF 264
+ +++ C + E ++ + +Q L Q+ + +D
Sbjct: 179 KMDFKI--FWLNLKNCNSPETVL------------EMLQKL-----LYQIDPNWTSRSDH 219
Query: 265 ---LKKRFH-----PNNVLGIRQFADTLNCLQLSEAADKYVQQYF----------HEVSM 306
+K R H +L + + + L L L + F +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 307 SDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLL 366
+D L I ++ ++V +++++ + LPR + P
Sbjct: 278 TD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTT-NPRR 329
Query: 367 -----------------SPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAG 409
H D++ T +I SS L P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTT--IIESSLN-----------VLEPA------- 369
Query: 410 EKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAV--ISTKS 467
R+ + +F + + + W + + V + S
Sbjct: 370 ---EYRKM-FDRLSVFPP-------SAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYS 415
Query: 468 CLTKAGDSLSTVEVFD-------PLVGRWQM----AEAMSMLRSRVGVAVMKNRL----Y 512
+ K ST+ + L + + + ++ ++ ++ L Y
Sbjct: 416 LVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 513 AFGGY--NGSERLSTVEEFDPVRRV-----W--NKVSPMCFKRSAVGAAA--LND-KLY 559
+ G+ E E R V + K+ +A G+ L K Y
Sbjct: 475 SHIGHHLKNIEH---PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 69/490 (14%), Positives = 148/490 (30%), Gaps = 165/490 (33%)
Query: 1 MDPLKHPSLEPNPDTSTVDYIRNLKM----SKLIKRSVS-PSFVTSTTSTMDECLVFQQL 55
M P+K +P+ T R+ ++ K +VS + + L +L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYL----KLRQAL--LEL 147
Query: 56 D----LFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAES 111
+ G + GK + +A D+ S
Sbjct: 148 RPAKNVLIDG---VLGS---GK-----------T------WVAL-----------DVCLS 173
Query: 112 KQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEAL---INFVY 168
+ + M +F ++ E ++ ++ L I+ +
Sbjct: 174 YKVQCKMDF---------------KIFWLNLKNCNSPETVLE-----MLQKLLYQIDPNW 213
Query: 169 SGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN------NVLDYYVL----F 218
+ R HS N++ L++ + LK + + N NV +
Sbjct: 214 TSRSD-HSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 219 SCRAM---------EALINFAYSGRVTIHSQNV----QSLMVVASFLQMQKVAD----AC 261
SC+ + + L + H + ++ +L + D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVL 323
Query: 262 ADFLKKRFHPN--NVLG--IRQFADT------LNCLQLSEAADKYV--------QQYFHE 303
+P +++ IR T +NC +L+ + + ++ F
Sbjct: 324 ------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 304 VSM--SDEFIGLGVNEV--NDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLA 359
+S+ I + + D++K + ++++ + V + K E S+P +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----ESTISIPSIYL 433
Query: 360 AVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARD--------FHL----MPER---- 403
+++ L + + L + I + + DL+ D HL PER
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 404 -------RFL 406
RFL
Sbjct: 494 RMVFLDFRFL 503
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 748 | |||
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 100.0 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 100.0 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 100.0 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 100.0 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 100.0 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 100.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 100.0 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 100.0 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 100.0 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 100.0 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 99.94 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 99.92 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 99.91 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 99.91 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 99.91 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 99.9 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 99.9 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 99.9 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 99.9 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 99.9 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 99.9 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 99.9 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 99.9 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 99.89 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 99.89 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 99.88 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 99.86 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 99.85 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 99.53 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 99.35 | |
| 4ajy_C | 97 | Transcription elongation factor B polypeptide 1; E | 99.1 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 98.95 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 98.76 | |
| 4eoz_A | 145 | Speckle-type POZ protein; E3 ubiquitin ligase, nuc | 98.74 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.49 | |
| 2z8h_A | 138 | Transcription regulator protein BACH1; BTB, POZ, d | 98.31 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.28 | |
| 2vkp_A | 109 | BTB/POZ domain-containing protein 6; protein-bindi | 98.25 | |
| 2yy9_A | 135 | Zinc finger and BTB domain-containing protein 48; | 98.21 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.18 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 98.13 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.13 | |
| 3b84_A | 119 | Zinc finger and BTB domain-containing protein 48; | 98.12 | |
| 2if5_A | 120 | Zinc finger and BTB domain-containing protein 7A; | 98.12 | |
| 1hv2_A | 99 | Elongin C, ELC1; protein-peptide complex, signalin | 98.11 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 98.11 | |
| 2fnj_C | 96 | Transcription elongation factor B polypeptide 1; b | 98.08 | |
| 1r29_A | 127 | B-cell lymphoma 6 protein; BTB domain, transcripti | 98.07 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.05 | |
| 2ppi_A | 144 | Gigaxonin; BTB domain, protein degradation, struct | 97.98 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.95 | |
| 3v7d_A | 169 | Suppressor of kinetochore protein 1; WD 40 domain, | 97.93 | |
| 2vpk_A | 116 | Myoneurin; transcription regulation, transcription | 97.92 | |
| 2ihc_A | 124 | Transcription regulator protein BACH1; BRIC-A-BRAC | 97.91 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.88 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.83 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.74 | |
| 3i3n_A | 279 | Kelch-like protein 11; structural genomics, BTB, K | 97.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.7 | |
| 3ohu_A | 125 | Transcription regulator protein BACH2; BTB/POZ dom | 97.68 | |
| 2q81_A | 119 | MIZ-1 protein; BTB/POZ domain, transcription; HET: | 97.67 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.67 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 97.66 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.66 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.64 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 97.63 | |
| 3htm_A | 172 | Speckle-type POZ protein; BTB, SPOP, ubiquitin, li | 97.63 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 97.6 | |
| 1buo_A | 121 | POZ domain, protein (promyelocytic leukemia zinc f | 97.6 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 97.59 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.58 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.58 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.57 | |
| 3hve_A | 256 | Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis | 97.53 | |
| 1vcb_B | 112 | Protein (elongin C); tumor suppressor, cancer, ubi | 97.48 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 97.45 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.44 | |
| 3m5b_A | 119 | Zinc finger and BTB domain-containing protein 32; | 97.43 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.43 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.42 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.4 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.38 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.33 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.32 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.32 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.31 | |
| 3ga1_A | 129 | Nucleus accumbens-associated protein 1; BTB/POZ do | 97.28 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 97.24 | |
| 3hqi_A | 312 | Speckle-type POZ protein; SPOP, ubiquitin, puckere | 97.23 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.22 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.21 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 97.2 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.17 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 97.14 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.13 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 97.12 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 97.12 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 97.11 | |
| 3drx_A | 202 | BTB/POZ domain-containing protein KCTD5; golgi, gr | 97.1 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.06 | |
| 2eqx_A | 105 | Kelch repeat and BTB domain-containing protein 4; | 97.05 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.04 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 97.02 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 96.99 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 96.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 96.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.95 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 96.94 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 96.94 | |
| 3fkc_A | 116 | Transcriptional regulator kaiso; zinc finger and B | 96.94 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 96.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 96.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.88 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 96.86 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 96.84 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.84 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.84 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 96.83 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.81 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 96.81 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 96.79 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 96.78 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 96.74 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.74 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 96.73 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 96.72 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 96.71 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 96.7 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 96.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 96.66 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 96.62 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.6 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.59 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 96.57 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 96.56 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.53 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.53 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.52 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 96.52 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 96.51 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 96.5 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 96.45 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 96.45 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.44 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.43 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 96.41 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 96.41 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.4 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.4 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 96.39 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.37 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 96.37 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 96.36 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 96.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.33 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.31 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 96.3 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 96.29 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 96.27 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.27 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 96.27 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 96.23 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 96.22 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.21 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 96.2 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.17 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 96.16 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 96.15 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 96.15 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 96.14 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 96.13 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.09 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 96.07 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.05 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 96.01 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 96.0 | |
| 2ast_A | 159 | S-phase kinase-associated protein 1A; SCF-substrat | 95.99 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 95.98 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.98 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 95.94 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.93 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 95.93 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 95.87 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 95.82 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 95.82 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.82 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 95.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 95.77 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 95.74 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 95.72 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 95.7 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 95.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 95.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 95.67 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 95.67 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 95.66 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.64 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 95.6 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 95.58 | |
| 3kvt_A | 115 | Potassium channel protein SHAW; tetramerization do | 95.58 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 95.58 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.58 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 95.56 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 95.54 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 95.52 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 95.43 | |
| 1qhu_A | 460 | Protein (hemopexin); beta propeller, HAEM binding | 95.42 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.41 | |
| 1s1g_A | 124 | Potassium voltage-gated channel subfamily D membe; | 95.39 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 95.36 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 95.35 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 95.34 | |
| 1pex_A | 207 | Collagenase-3, MMP-13; C-terminal hemopexin-like d | 95.31 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 95.28 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 95.23 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 95.21 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 95.1 | |
| 1nn7_A | 105 | Potassium channel KV4.2; teteramerization domain, | 95.08 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 95.07 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 95.05 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 95.04 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.03 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.99 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 94.99 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 94.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 94.93 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 94.9 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 94.89 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 94.84 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 94.79 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 94.73 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 94.7 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.69 | |
| 1itv_A | 195 | MMP9; adaptive molecular recognition, beta propell | 94.68 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 94.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 94.66 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 94.65 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 94.55 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 94.54 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 94.53 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 94.52 | |
| 2nz0_B | 140 | Potassium voltage-gated channel subfamily D membe; | 94.52 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 94.51 | |
| 1t1d_A | 100 | Protein (potassium channel KV1.1); potassium chann | 94.42 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 94.4 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 94.32 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 94.25 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 94.19 | |
| 2p1m_A | 160 | SKP1-like protein 1A; F-BOX, leucine rich repeat, | 94.19 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 94.17 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 94.17 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 94.16 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 94.08 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 93.92 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 93.85 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 93.82 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 93.7 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 93.64 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 93.64 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 93.63 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.6 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 93.46 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 93.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 93.19 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 92.98 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 92.98 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 92.97 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 92.91 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 92.9 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 92.79 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 92.71 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 92.71 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 92.62 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 92.27 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 92.25 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 92.22 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 92.12 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 92.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 92.08 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 92.06 | |
| 1fs1_B | 141 | SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le | 92.01 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 91.74 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 91.69 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 91.44 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 91.4 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 91.26 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 91.22 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 91.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 90.91 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 90.9 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 90.75 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 90.75 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 90.7 | |
| 3oyo_A | 225 | Hemopexin fold protein CP4; seeds, plant protein; | 90.69 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 90.47 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 90.37 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 90.15 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 90.1 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 89.9 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 89.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 89.76 | |
| 1su3_A | 450 | Interstitial collagenase; prodomain, hemopexin dom | 89.74 | |
| 3c7x_A | 196 | Matrix metalloproteinase-14; membrane protein inte | 89.65 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 89.61 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 89.46 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 89.11 | |
| 3ba0_A | 365 | Macrophage metalloelastase; FULL-length MMP-12, he | 89.07 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 89.04 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 89.01 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 88.04 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 87.98 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 86.39 | |
| 1sqj_A | 789 | OXG-RCBH, oligoxyloglucan reducing-END-specific ce | 86.28 | |
| 1gen_A | 218 | Gelatinase A; hydrolase, hemopexin domain, metallo | 86.04 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 86.03 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 85.78 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 85.61 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 85.61 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 85.13 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 84.45 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 84.39 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 84.22 | |
| 3drz_A | 107 | BTB/POZ domain-containing protein KCTD5; potassium | 84.22 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 83.6 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 83.48 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 83.4 | |
| 1hxn_A | 219 | Hemopexin, HPX; heme, binding protein; 1.80A {Oryc | 83.23 | |
| 2cn3_A | 737 | Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc | 82.58 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 82.31 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 81.93 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 81.26 | |
| 3ju4_A | 670 | Endo-N-acetylneuraminidase; endonf, polysia, high- | 80.89 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 80.88 | |
| 3lp9_A | 227 | LS-24; SEED albumin, plant protein; HET: SPM; 2.20 | 80.65 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 80.1 |
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=422.19 Aligned_cols=293 Identities=39% Similarity=0.680 Sum_probs=265.1
Q ss_pred ccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCCCCceE
Q psy10286 411 KTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQ 490 (748)
Q Consensus 411 ~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~ 490 (748)
++.||....+++.||++||.+. ...+++++||+.+++|.
T Consensus 5 ~~~~r~~~~~~~~i~v~GG~~~-----------------------------------------~~~~~~~~~d~~~~~W~ 43 (302)
T 2xn4_A 5 RTRLRTPMNLPKLMVVVGGQAP-----------------------------------------KAIRSVECYDFKEERWH 43 (302)
T ss_dssp ----------CEEEEEECCBSS-----------------------------------------SBCCCEEEEETTTTEEE
T ss_pred cccCCcccCCCCEEEEECCCCC-----------------------------------------CCCCcEEEEcCcCCcEe
Confidence 4567777678899999999743 33467999999999999
Q ss_pred EccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCC
Q psy10286 491 MAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSL 570 (748)
Q Consensus 491 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 570 (748)
.++++|.+|.+|++++++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||.++...+
T Consensus 44 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 123 (302)
T 2xn4_A 44 QVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGL 123 (302)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEE
T ss_pred EcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccC
Confidence 99999999999999999999999999987777899999999999999999999999999999999999999998877778
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCc--ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS--IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 648 (748)
+++++||+.+++|+.++++|.+|..|++++++++||++||.++.. ..+++++||+.+++|+.++++|.+|..|+++++
T Consensus 124 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 203 (302)
T 2xn4_A 124 SSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL 203 (302)
T ss_dssp EEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred ceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE
Confidence 999999999999999999999999999999999999999986543 478999999999999999999999999999999
Q ss_pred CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 649 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
+++||++||.++....+++++||+.+++|+.++.+|.+|.+|+++.++++|||+||.++....+++++||+++++|+.++
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence 99999999998877789999999999999999999999999999999999999999987777889999999999999997
Q ss_pred -CCCCCCcceEEEEeec
Q psy10286 729 -PMCAHEGGVGVGVIPI 744 (748)
Q Consensus 729 -~~~~~r~~~~~~~~~~ 744 (748)
+||.+|++|+++++..
T Consensus 284 ~~~~~~r~~~~~~~~~~ 300 (302)
T 2xn4_A 284 SCMSTGRSYAGVTVIDK 300 (302)
T ss_dssp SCCSSCCBSCEEEEEEC
T ss_pred cccCcccccceEEEecc
Confidence 8999999999999853
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-50 Score=421.31 Aligned_cols=269 Identities=37% Similarity=0.722 Sum_probs=255.2
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccC----CCCCCCCeEEEEECCCCeEEEccCCCCCccee
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY----NGSERLSTVEEFDPVRRVWNKVSPMCFKRSAV 549 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~----~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 549 (748)
...++++.||+.+++|..++++|.+|.+|++++++++||++||. .+....+++++||+.+++|+.++++|.+|..|
T Consensus 36 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 115 (308)
T 1zgk_A 36 QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 115 (308)
T ss_dssp SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred CCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc
Confidence 45578999999999999999999999999999999999999998 55556789999999999999999999999999
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
++++++++||++||.++...++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++
T Consensus 116 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 116 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 99999999999999887667899999999999999999999999999999999999999999877778999999999999
Q ss_pred EEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCC
Q psy10286 630 WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS 709 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 709 (748)
|+.++++|.+|..|++++++++|||+||.++....+++++||+.+++|+.++++|.+|.+|+++.++++|||+||.++..
T Consensus 196 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 275 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT 275 (308)
T ss_dssp EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCc
Confidence 99999999999999999999999999999887778999999999999999999999999999999999999999998877
Q ss_pred CCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 710 NLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 710 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
..+++++||+++++|+.+++||.+|++|++++|
T Consensus 276 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~l 308 (308)
T 1zgk_A 276 FLDSVECYDPDTDTWSEVTRMTSGRSGVGVAVT 308 (308)
T ss_dssp BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEC
T ss_pred ccceEEEEcCCCCEEeecCCCCCCcccceeEeC
Confidence 788999999999999999999999999999985
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=418.48 Aligned_cols=270 Identities=42% Similarity=0.785 Sum_probs=256.7
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe---EEEccCCCCCcceeE
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV---WNKVSPMCFKRSAVG 550 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~---W~~~~~~~~~r~~~~ 550 (748)
...++++.||+.+++|..++++|.+|.+|+++..+++||++||..+....+++++||+.+++ |+.++++|.+|..|+
T Consensus 28 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~ 107 (301)
T 2vpj_A 28 SPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG 107 (301)
T ss_dssp EECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred cceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence 45578999999999999999999999999999999999999999877778999999999999 999999999999999
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
++.++++||++||.++...++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|
T Consensus 108 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 108 ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 99999999999999877778999999999999999999999999999999999999999998777789999999999999
Q ss_pred EEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCC
Q psy10286 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~ 710 (748)
+.++++|.+|..|+++.++++||++||.++....+++++||+.+++|+.++.+|.+|..|+++.++++|||+||.++...
T Consensus 188 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL 267 (301)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSB
T ss_pred EeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcc
Confidence 99999999999999999999999999998877789999999999999999999999999999999999999999987766
Q ss_pred CCeEEEEeCCCCceEecCCCCCCCcceEEEEee
Q psy10286 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIP 743 (748)
Q Consensus 711 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 743 (748)
.+++++||+++++|+.+++||.+|++|++++++
T Consensus 268 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 268 LSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred cccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence 789999999999999999999999999999884
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=416.32 Aligned_cols=268 Identities=26% Similarity=0.466 Sum_probs=253.6
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEEC
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALN 555 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 555 (748)
.++++.||+.+++|..++++|.+|.+|++++++++||++||.+ ....+++++||+.+++|+.++++|.+|.+|++++++
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 101 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAE 101 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEET
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEEC
Confidence 3679999999999999999999999999999999999999987 667899999999999999999999999999999999
Q ss_pred CEEEEEeCCC-CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcc----cCeEEEEECCCCcE
Q psy10286 556 DKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI----FDSVERYDPKTDEW 630 (748)
Q Consensus 556 ~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~~~~yd~~~~~W 630 (748)
++||++||.+ +...++++++||+.+++|+.++++|.+|..|++++++++||++||.++... .+++++||+.+++|
T Consensus 102 ~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 9999999987 566789999999999999999999999999999999999999999866554 78999999999999
Q ss_pred EEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCC
Q psy10286 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~ 710 (748)
+.++++|.+|..|+++.++++||++||.++....+++++||+.+++|+.++++|.+|.+|+++.++++|||+||.++...
T Consensus 182 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 261 (306)
T 3ii7_A 182 TELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGR 261 (306)
T ss_dssp EEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECBCSSSB
T ss_pred EECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCcCCCee
Confidence 99999999999999999999999999998877789999999999999999999999999999999999999999988778
Q ss_pred CCeEEEEeCCCCceEecCCCCCCCcceEEEEeec
Q psy10286 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744 (748)
Q Consensus 711 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 744 (748)
.+++++||+++++|+.+++||.+|.+|+++++.-
T Consensus 262 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 262 LGHILEYNTETDKWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp CCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEE
T ss_pred eeeEEEEcCCCCeEEeCCCcccccceeEEEEECC
Confidence 8899999999999999999999999999888743
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-46 Score=389.14 Aligned_cols=283 Identities=27% Similarity=0.505 Sum_probs=251.3
Q ss_pred cCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCCCCceEE
Q psy10286 412 TTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQM 491 (748)
Q Consensus 412 ~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~ 491 (748)
.+||.++...+.||++||. ++++||+.+++|..
T Consensus 6 ~~~r~~~~~~~~i~~~GG~-----------------------------------------------~~~~yd~~~~~W~~ 38 (318)
T 2woz_A 6 DIPRHGMFVKDLILLVNDT-----------------------------------------------AAVAYDPMENECYL 38 (318)
T ss_dssp SSCCCCCSEEEEEEEECSS-----------------------------------------------EEEEEETTTTEEEE
T ss_pred ccccccceecchhhhcccc-----------------------------------------------ceEEECCCCCceec
Confidence 4678877788899999994 26889999999987
Q ss_pred cc-CCCcccceeEEEEECCEEEEEccCC--CC----CCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCC
Q psy10286 492 AE-AMSMLRSRVGVAVMKNRLYAFGGYN--GS----ERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY 564 (748)
Q Consensus 492 ~~-~~~~~r~~~~~~~~~~~iyv~GG~~--~~----~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 564 (748)
.+ +.+.+|.+|+++..+++||++||.. .. ...+.+++||+.+++|+.++++|.+|..|++++++++||++||.
T Consensus 39 ~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 118 (318)
T 2woz_A 39 TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGK 118 (318)
T ss_dssp EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEE
T ss_pred ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCc
Confidence 43 2247899999999999999999963 11 12345999999999999999999999999999999999999998
Q ss_pred C--CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCC-CCcccCeEEEEECCCCcEEEccCCCCCCc
Q psy10286 565 D--GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHD-GLSIFDSVERYDPKTDEWTSVKPMLTKRC 641 (748)
Q Consensus 565 ~--~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 641 (748)
+ +...++++++||+.+++|+.++++|.+|.+|++++++++||++||.+ +....+++++||+.+++|+.++++|.+|.
T Consensus 119 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 198 (318)
T 2woz_A 119 DLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS 198 (318)
T ss_dssp BTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred cCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc
Confidence 6 45567999999999999999999999999999999999999999984 34567899999999999999999999999
Q ss_pred ceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC---------CCCC
Q psy10286 642 RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV---------SNLP 712 (748)
Q Consensus 642 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~---------~~~~ 712 (748)
.|++++++++|||+||.++....+++++||+.+++|+.++++|.+|.+|+++.++++|||+||.+.. ...+
T Consensus 199 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~ 278 (318)
T 2woz_A 199 MFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVN 278 (318)
T ss_dssp SCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCC
T ss_pred cceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceee
Confidence 9999999999999999988777899999999999999999999999999999999999999998752 2467
Q ss_pred eEEEEeCCCCceEecCCCCCCCcceEEEEee
Q psy10286 713 TVEVYDPSTDSWAFVAPMCAHEGGVGVGVIP 743 (748)
Q Consensus 713 ~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 743 (748)
++++||+++++|+.+ +|.+|++|+++++.
T Consensus 279 ~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~ 307 (318)
T 2woz_A 279 DIWKYEDDKKEWAGM--LKEIRYASGASCLA 307 (318)
T ss_dssp CEEEEETTTTEEEEE--ESCCGGGTTCEEEE
T ss_pred eEEEEeCCCCEehhh--cccccccccceeeC
Confidence 899999999999999 88999999988763
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=386.84 Aligned_cols=263 Identities=23% Similarity=0.455 Sum_probs=236.4
Q ss_pred eEEEEeCCCCceEEccCC--CcccceeEEEEECCEEEEEccCC----C--CCCCCeEEEEECCCCeEEEccCCCCCccee
Q psy10286 478 TVEVFDPLVGRWQMAEAM--SMLRSRVGVAVMKNRLYAFGGYN----G--SERLSTVEEFDPVRRVWNKVSPMCFKRSAV 549 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~--~~~r~~~~~~~~~~~iyv~GG~~----~--~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 549 (748)
+++.||+.+++|.. +++ |.+|.+|++++++++||++||.. + ....+++++||+.+++|+.++++|.+|.+|
T Consensus 14 ~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 14 GAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp EEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred ceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 57899999999987 656 45899999999999999999962 1 223456999999999999999999999999
Q ss_pred EEEEECCEEEEEeCCC---CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccC-CCCcccCeEEEEEC
Q psy10286 550 GAAALNDKLYVCGGYD---GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDP 625 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~---~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~ 625 (748)
++++++++||++||.+ +...++++++||+.+++|+.++++|.+|..|++++++++||++||. ++....+++++||+
T Consensus 93 ~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~ 172 (315)
T 4asc_A 93 GLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDP 172 (315)
T ss_dssp EEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEET
T ss_pred eEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeC
Confidence 9999999999999964 3567899999999999999999999999999999999999999998 55567899999999
Q ss_pred CCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCC
Q psy10286 626 KTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGY 705 (748)
Q Consensus 626 ~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~ 705 (748)
.+++|+.++++|.+|..|++++++++|||+||.++....+++++||+.+++|+.++++|.+|.+|+++.++++|||+||.
T Consensus 173 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 173 KKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEE
T ss_pred CCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCc
Confidence 99999999999999999999999999999999988878899999999999999999999999999999999999999998
Q ss_pred CCC---------CCCCeEEEEeCCCCceEecCCCCCCCcceEEEEee
Q psy10286 706 DGV---------SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIP 743 (748)
Q Consensus 706 ~~~---------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 743 (748)
++. ...+++++||+++++|+.+ ++.+|..|+++++.
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~ 297 (315)
T 4asc_A 253 ATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLP 297 (315)
T ss_dssp EEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEE
T ss_pred cccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeC
Confidence 531 2356899999999999999 56678888877763
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=364.98 Aligned_cols=255 Identities=16% Similarity=0.202 Sum_probs=215.3
Q ss_pred eEEEEeCC--CCceEEccCCC-cccceeEEEEECCEEEEEccC-C----CCCCCCeEEEEECCCCeEEEccCCC-CCcce
Q psy10286 478 TVEVFDPL--VGRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGY-N----GSERLSTVEEFDPVRRVWNKVSPMC-FKRSA 548 (748)
Q Consensus 478 ~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~----~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~ 548 (748)
++++||+. +++|+.++++| .+|.+|++++++++|||+||. . ....++++|+||+.+++|+.+++++ .+|.+
T Consensus 32 ~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~ 111 (357)
T 2uvk_A 32 AWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAG 111 (357)
T ss_dssp CEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSS
T ss_pred eEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCccccc
Confidence 68999998 48999999999 899999999999999999998 2 2345789999999999999999998 99999
Q ss_pred eEEEEECCEEEEEeCCCCC----------------------------------CCCceEEEEeCCCCeEEEccCCCCCCc
Q psy10286 549 VGAAALNDKLYVCGGYDGV----------------------------------SSLNTVECYEPDKDQWRIVKSMQKHRS 594 (748)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~~~~W~~~~~~~~~r~ 594 (748)
|++++++++||++||.++. ..++++++||+.+++|+.++++|.+|.
T Consensus 112 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~ 191 (357)
T 2uvk_A 112 HVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT 191 (357)
T ss_dssp EEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC
T ss_pred ceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCc
Confidence 9999999999999998643 256899999999999999999998755
Q ss_pred c-eEEEEECCEEEEEccCCCC-cccCeEEEEEC--CCCcEEEccCCCCC--CcceeEEEECCEEEEEeccCCC-------
Q psy10286 595 A-GGVIAFDSYVYALGGHDGL-SIFDSVERYDP--KTDEWTSVKPMLTK--RCRLGVAALNNKIYVCGGYDGA------- 661 (748)
Q Consensus 595 ~-~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~--~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~------- 661 (748)
. |++++++++||++||.++. ...+++++||+ .+++|+.++++|.+ |..|++++++++|||+||.+..
T Consensus 192 ~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 271 (357)
T 2uvk_A 192 AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQ 271 (357)
T ss_dssp BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHH
T ss_pred ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCccccc
Confidence 5 9999999999999998543 34678999986 99999999988766 4577799999999999996432
Q ss_pred ----------ccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCC-CCeEEEEeCCCCceEecCCC
Q psy10286 662 ----------IFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN-LPTVEVYDPSTDSWAFVAPM 730 (748)
Q Consensus 662 ----------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~ 730 (748)
..++++++||+.+++|+.++.+|.+|.+|+++.++++|||+||.+.+.. .+++++|+.++++|....+.
T Consensus 272 ~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 272 NGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp TTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred ccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 2346899999999999999999999999999999999999999886543 58999999999999999887
Q ss_pred CC
Q psy10286 731 CA 732 (748)
Q Consensus 731 ~~ 732 (748)
|+
T Consensus 352 ~~ 353 (357)
T 2uvk_A 352 HH 353 (357)
T ss_dssp --
T ss_pred cc
Confidence 75
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=356.30 Aligned_cols=248 Identities=36% Similarity=0.689 Sum_probs=224.3
Q ss_pred CCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCC----CCCCC
Q psy10286 494 AMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY----DGVSS 569 (748)
Q Consensus 494 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~----~~~~~ 569 (748)
+-+.+|..|+++.++++||++||. .....+++++||+.+++|+.++++|.+|.+|++++++++||++||. ++...
T Consensus 10 ~~~~~~~~~~~~~~~~~i~v~GG~-~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 88 (308)
T 1zgk_A 10 SSGLVPRGSHAPKVGRLIYTAGGY-FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTD 88 (308)
T ss_dssp -----------CCCCCCEEEECCB-SSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEE
T ss_pred cCCeeeCCccccCCCCEEEEEeCc-CCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCee
Confidence 346778999999999999999998 4557789999999999999999999999999999999999999998 55556
Q ss_pred CceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC
Q psy10286 570 LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649 (748)
Q Consensus 570 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (748)
++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+|..|++++++
T Consensus 89 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 168 (308)
T 1zgk_A 89 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLN 168 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred cceEEEECCCCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEEC
Confidence 88999999999999999999999999999999999999999877777889999999999999999999999999999999
Q ss_pred CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 650 NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 650 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
++||++||.++....+++++||+.+++|+.++++|.+|.+|+++.++++|||+||.++....+++++||+++++|+.+++
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 99999999988777899999999999999999999999999999999999999999877778899999999999999999
Q ss_pred CCCCCcceEEEEe
Q psy10286 730 MCAHEGGVGVGVI 742 (748)
Q Consensus 730 ~~~~r~~~~~~~~ 742 (748)
+|.+|.+|+++++
T Consensus 249 ~p~~r~~~~~~~~ 261 (308)
T 1zgk_A 249 MKHRRSALGITVH 261 (308)
T ss_dssp CSSCCBSCEEEEE
T ss_pred CCCCccceEEEEE
Confidence 9999999998876
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=351.69 Aligned_cols=261 Identities=37% Similarity=0.661 Sum_probs=233.8
Q ss_pred ceEeecCCCCceeecccccc---cceEEecccccccCC-----CccceEEEEeCCCCceEEccCCCcccceeEEEEECCE
Q psy10286 439 TVEVFDPLVGRWQMAEEETL---SNAVISTKSCLTKAG-----DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNR 510 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~~~~---~~~~~~~~~~~~~~g-----~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 510 (748)
++++||+.+++|..++..+. .++++..++.++..| ...+++++||+.+++|+.++++|.+|.+|++++++++
T Consensus 31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~ 110 (302)
T 2xn4_A 31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGL 110 (302)
T ss_dssp CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCE
Confidence 37899999999998865332 334444455555444 2457899999999999999999999999999999999
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCC--CCceEEEEeCCCCeEEEccC
Q psy10286 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS--SLNTVECYEPDKDQWRIVKS 588 (748)
Q Consensus 511 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~ 588 (748)
||++||.++....+++++||+.+++|+.++++|.+|..|++++++++||++||.++.. .++++++||+.+++|+.+++
T Consensus 111 iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~ 190 (302)
T 2xn4_A 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE 190 (302)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC
T ss_pred EEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC
Confidence 9999999877778899999999999999999999999999999999999999987543 47899999999999999999
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEE
Q psy10286 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 589 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 668 (748)
+|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+|..|+++.++++||++||.++....++++
T Consensus 191 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 270 (302)
T 2xn4_A 191 MSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVE 270 (302)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEE
T ss_pred CccccccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEE
Confidence 99999999999999999999999877778899999999999999999999999999999999999999998877789999
Q ss_pred EEeCCCCcEEEcc-CCCCCCcceEEEEECCEE
Q psy10286 669 MYDPITDEWKMIA-SMNVMRSRVALVANMGKL 699 (748)
Q Consensus 669 ~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~l 699 (748)
+||+++++|+.++ .+|.+|..|++++++++|
T Consensus 271 ~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~i 302 (302)
T 2xn4_A 271 YYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302 (302)
T ss_dssp EEETTTTEEEECSSCCSSCCBSCEEEEEEC--
T ss_pred EEcCCCCeEEECCcccCcccccceEEEecccC
Confidence 9999999999997 899999999999998875
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=356.80 Aligned_cols=227 Identities=21% Similarity=0.364 Sum_probs=211.0
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC---CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN---GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
.++++.||+.+++|+.++++|.+|.+|++++++++|||+||.+ +....+++++||+.+++|+.++++|.+|.+|+++
T Consensus 66 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 66 SAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp EEEEEEEETTTTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred ccceEEecCCCCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 4569999999999999999999999999999999999999974 3567889999999999999999999999999999
Q ss_pred EECCEEEEEeCC-CCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 553 ALNDKLYVCGGY-DGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 553 ~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+++++||++||. .+...++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+
T Consensus 146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 999999999998 4566789999999999999999999999999999999999999999987777889999999999999
Q ss_pred EccCCCCCCcceeEEEECCEEEEEeccCCC---------ccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEE
Q psy10286 632 SVKPMLTKRCRLGVAALNNKIYVCGGYDGA---------IFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAI 702 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~ 702 (748)
.++++|.+|..|+++.++++|||+||.++. ...+++++||+++++|+.+ ++.+|.+|++++++++||++
T Consensus 226 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~l~v~ 303 (315)
T 4asc_A 226 PFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV--LREIAYAAGATFLPVRLNVL 303 (315)
T ss_dssp EECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCSSCEEEEEEECGG
T ss_pred ECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh--ccCCcCccceEEeCCEEEEE
Confidence 999999999999999999999999998531 3568999999999999999 67789999999999999999
Q ss_pred eC
Q psy10286 703 GG 704 (748)
Q Consensus 703 GG 704 (748)
+.
T Consensus 304 ~~ 305 (315)
T 4asc_A 304 RL 305 (315)
T ss_dssp GS
T ss_pred Ee
Confidence 65
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-41 Score=349.21 Aligned_cols=280 Identities=25% Similarity=0.437 Sum_probs=246.3
Q ss_pred cCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccc---cceEEecccccccCC----CccceEEEEeC
Q psy10286 412 TTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL---SNAVISTKSCLTKAG----DSLSTVEVFDP 484 (748)
Q Consensus 412 ~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~---~~~~~~~~~~~~~~g----~~~~~~~~yd~ 484 (748)
.+||.+ ..+.||++||... .+++++||+.+++|..+++.+. .++++..++.++..| ...++++.||+
T Consensus 4 ~~pr~~--~~~~l~~~GG~~~----~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~ 77 (306)
T 3ii7_A 4 TRPRRK--KHDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNV 77 (306)
T ss_dssp --------CCCEEEEEECCSS----TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEET
T ss_pred ccCCcc--ccceEEEEeCCCC----CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeC
Confidence 345543 3578999999754 6899999999999999876432 333444455555444 35689999999
Q ss_pred CCCceEEccCCCcccceeEEEEECCEEEEEccCC-CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeC
Q psy10286 485 LVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN-GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGG 563 (748)
Q Consensus 485 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG 563 (748)
.+++|..++++|.+|.+|++++++++|||+||.+ +....+++++||+.+++|+.++++|.+|..|+++.++++||++||
T Consensus 78 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 157 (306)
T 3ii7_A 78 VKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGG 157 (306)
T ss_dssp TTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECC
T ss_pred CCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECC
Confidence 9999999999999999999999999999999987 566788999999999999999999999999999999999999999
Q ss_pred CCCCCC----CceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCC
Q psy10286 564 YDGVSS----LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK 639 (748)
Q Consensus 564 ~~~~~~----~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 639 (748)
.++... ++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+
T Consensus 158 ~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 237 (306)
T 3ii7_A 158 SLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK 237 (306)
T ss_dssp EESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC
T ss_pred CCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC
Confidence 876554 8999999999999999999999999999999999999999997777788999999999999999999999
Q ss_pred CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECC
Q psy10286 640 RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 697 (748)
|..|++++++++|||+||.++....+++++||+++++|+.++++|.+|.+|+++.+.+
T Consensus 238 r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 295 (306)
T 3ii7_A 238 GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVD 295 (306)
T ss_dssp BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEEEEEE
T ss_pred ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEEEECC
Confidence 9999999999999999999888888999999999999999999999999998887643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=343.51 Aligned_cols=284 Identities=32% Similarity=0.625 Sum_probs=250.2
Q ss_pred ccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccc---cceEEecccccccCC-----CccceEEEE
Q psy10286 411 KTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL---SNAVISTKSCLTKAG-----DSLSTVEVF 482 (748)
Q Consensus 411 ~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~---~~~~~~~~~~~~~~g-----~~~~~~~~y 482 (748)
+++||. ..++.||++||....+...+++++||+.+++|..++..+. ..+++..++.++..| ...+++++|
T Consensus 6 ~~~pr~--~~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 6 RTRARL--GANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp ---------CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred cccccc--cCCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEE
Confidence 455663 4789999999954555677899999999999999875332 233444445554443 345789999
Q ss_pred eCCCCc---eEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEE
Q psy10286 483 DPLVGR---WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLY 559 (748)
Q Consensus 483 d~~~~~---W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iy 559 (748)
|+.+++ |+.++++|.+|.+|++++++++||++||..+....+++++||+.+++|+.++++|.+|..|++++++++||
T Consensus 84 d~~~~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 163 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIY 163 (301)
T ss_dssp ETTCCTTCCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEE
T ss_pred ECCCCCCCeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEE
Confidence 999999 99999999999999999999999999999877778999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCC
Q psy10286 560 VCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK 639 (748)
Q Consensus 560 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~ 639 (748)
++||.++...++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.++++|.+
T Consensus 164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 243 (301)
T 2vpj_A 164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP 243 (301)
T ss_dssp EECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC
T ss_pred EECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc
Confidence 99998877788999999999999999999999999999999999999999998777789999999999999999999999
Q ss_pred CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEEC
Q psy10286 640 RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 696 (748)
|..|+++.++++||++||.++....+++++||+++++|+.++.+|.+|.+|+++.++
T Consensus 244 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 300 (301)
T 2vpj_A 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300 (301)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEEEEE
T ss_pred ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEEEeC
Confidence 999999999999999999988777899999999999999999999999999998874
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-42 Score=349.14 Aligned_cols=263 Identities=29% Similarity=0.519 Sum_probs=228.2
Q ss_pred cceecchhhHhhHHHHHHHHHhcCCcccEEEEEC---CeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchhee
Q psy10286 49 CLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVD---DQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVI 125 (748)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~---~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~ 125 (748)
...+.++.|.+.+++.|+++++++.+|||+|.++ |++|+|||+||+++|+||++||.++++|+....|.+++..
T Consensus 7 ~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~--- 83 (279)
T 3i3n_A 7 AEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWS--- 83 (279)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCS---
T ss_pred ccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEecccc---
Confidence 4568888999999999999999999999999998 9999999999999999999999999888877766662100
Q ss_pred hhhccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 126 VLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
..+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.+.
T Consensus 84 -------------------------~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~ 138 (279)
T 3i3n_A 84 -------------------------SEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKK 138 (279)
T ss_dssp -------------------------STTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------ccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHc
Confidence 0028999999999999999999999999999999999999988888888887776
Q ss_pred ccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcC
Q psy10286 206 FHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLN 285 (748)
Q Consensus 206 l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~ 285 (748)
++++|| +.++.+|+.++
T Consensus 139 l~~~n~---------------------------------------------------------------~~i~~~A~~~~ 155 (279)
T 3i3n_A 139 LHLSNC---------------------------------------------------------------VAIHSLAHMYT 155 (279)
T ss_dssp CCTTTH---------------------------------------------------------------HHHHHHHHHTT
T ss_pred CCcchH---------------------------------------------------------------HHHHHHHHHcC
Confidence 555444 45556677788
Q ss_pred chHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCC
Q psy10286 286 CLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPL 365 (748)
Q Consensus 286 ~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~ 365 (748)
+.+|.+.|.+||.+||.+++.+++|..|+.+.|..+++++.|.+.+|.+||+++++|++++.+.|.+++..++++|||++
T Consensus 156 ~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~sE~~vf~av~~W~~~~~~~r~~~~~~ll~~VRf~l 235 (279)
T 3i3n_A 156 LSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQ 235 (279)
T ss_dssp CHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTCSSCCCSCHHHHHHHHHHHHHTTHHHHTTTHHHHHTTSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHhhhccchhhccChhhhHHHHHHHhhccCcc
Q psy10286 366 LSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPE 402 (748)
Q Consensus 366 l~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 402 (748)
|++.+|.+.+...+++..++.|.+++.+|.+||..+.
T Consensus 236 ~~~~~L~~~v~~~~l~~~~~~c~~~l~ea~~~~~~~~ 272 (279)
T 3i3n_A 236 MKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRA 272 (279)
T ss_dssp SCHHHHHHTTTTSHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhhccchhcCCHHHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999987653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=351.57 Aligned_cols=226 Identities=22% Similarity=0.375 Sum_probs=209.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC--CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN--GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
++++.||+.+++|..++++|.+|.+|++++++++|||+||.. +....+++++||+.+++|+.++++|.+|.+|+++++
T Consensus 78 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 157 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH 157 (318)
T ss_dssp BEEEEEETTTTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE
T ss_pred ccEEEEeCCCCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE
Confidence 469999999999999999999999999999999999999986 455678999999999999999999999999999999
Q ss_pred CCEEEEEeCCC-CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+++||++||.. +...++++++||+.+++|+.++++|.+|..|++++++++||++||.++....+++++||+.+++|+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 99999999975 44568999999999999999999999999999999999999999997777788999999999999999
Q ss_pred cCCCCCCcceeEEEECCEEEEEeccCCC---------ccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeC
Q psy10286 634 KPMLTKRCRLGVAALNNKIYVCGGYDGA---------IFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
+++|.+|..|+++.++++||++||.+.. ...+++++||+++++|+.+ +|.+|.+|+++.++++|||+..
T Consensus 238 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~~~~~~~~~iyi~~~ 315 (318)
T 2woz_A 238 TEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYASGASCLATRLNLFKL 315 (318)
T ss_dssp CCCSSCCBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGTTCEEEEEEEEGGGC
T ss_pred CCCCCcccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccccceeeCCEEEEEEe
Confidence 9999999999999999999999998652 3478999999999999999 7889999999999999999853
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=341.86 Aligned_cols=248 Identities=22% Similarity=0.511 Sum_probs=196.9
Q ss_pred cceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhh
Q psy10286 49 CLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLA 128 (748)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 128 (748)
...+..+.|.+.++++++++++++.+|||+|.++|++|+|||+||+++|+||++||.+++.+.
T Consensus 6 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~----------------- 68 (256)
T 3hve_A 6 GSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD----------------- 68 (256)
T ss_dssp ----CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC------------------------
T ss_pred CCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCCcc-----------------
Confidence 455677899999999999999999999999999999999999999999999999999877621
Q ss_pred ccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 129 ATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
++...+|.++++++++|+.+|+|+|||++.++.+++.+++.+|++||++.|++.|++||.+.+++
T Consensus 69 ---------------e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~ 133 (256)
T 3hve_A 69 ---------------DGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAA 133 (256)
T ss_dssp -------------------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCS
T ss_pred ---------------cCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCH
Confidence 12223455599999999999999999999999999999999999998888888888777776555
Q ss_pred CcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchH
Q psy10286 209 NNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQ 288 (748)
Q Consensus 209 ~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~ 288 (748)
+|| +.++.+|+.+++.+
T Consensus 134 ~n~---------------------------------------------------------------~~i~~~A~~~~~~~ 150 (256)
T 3hve_A 134 ENC---------------------------------------------------------------IGIRDFALHYCLHH 150 (256)
T ss_dssp STT---------------------------------------------------------------HHHHHHHHHTTCHH
T ss_pred hhH---------------------------------------------------------------HHHHHHHHHcCcHH
Confidence 544 45566677788889
Q ss_pred HHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCCh
Q psy10286 289 LSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSP 368 (748)
Q Consensus 289 l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~ 368 (748)
|.+.|.+||.+||.++..+.+|..|+.+.+..+++++.|.+.+|.+||+++++|++++.++|.+++..++++|||++|++
T Consensus 151 L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d~L~v~~E~~v~~av~~W~~~~~~~R~~~~~~ll~~VRf~~l~~ 230 (256)
T 3hve_A 151 VHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDS 230 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC-------CTTHHHHTTTCCC--CCSTTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHccCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccchhhccC-hhhhHHH
Q psy10286 369 HYLADRVATEALIRSS-HECRDLV 391 (748)
Q Consensus 369 ~~l~~~~~~~~l~~~~-~~~~~~~ 391 (748)
.+|.+.+..++++... +.|++++
T Consensus 231 ~~l~~~v~~~~l~~~~~~~c~~ll 254 (256)
T 3hve_A 231 SYLREQMLNEPLVREIVKECSNIP 254 (256)
T ss_dssp -CHHHHHHTSTTHHHHHCC-----
T ss_pred HHHHHHHhcChHHHhhHHHHHHHh
Confidence 9999998888998877 6788765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=342.35 Aligned_cols=248 Identities=15% Similarity=0.155 Sum_probs=212.7
Q ss_pred EccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECC--CCeEEEccCCC-CCcceeEEEEECCEEEEEeCC-C-
Q psy10286 491 MAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV--RRVWNKVSPMC-FKRSAVGAAALNDKLYVCGGY-D- 565 (748)
Q Consensus 491 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~-~- 565 (748)
.+++||.+|.+|++++++++|||+||..+ +++++||+. +++|+.+++|| .+|.+|++++++++||++||. .
T Consensus 2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~ 77 (357)
T 2uvk_A 2 VLPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKN 77 (357)
T ss_dssp CSCCCSSCCCSCEEEEETTEEEEECGGGT----TCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEEC
T ss_pred CCCCCCccccceEEEEECCEEEEEeCcCC----CeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCC
Confidence 46889999999999999999999999764 479999998 49999999999 899999999999999999998 2
Q ss_pred ---CCCCCceEEEEeCCCCeEEEccCCC-CCCcceEEEEECCEEEEEccCCCCc--------------------------
Q psy10286 566 ---GVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAFDSYVYALGGHDGLS-------------------------- 615 (748)
Q Consensus 566 ---~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~-------------------------- 615 (748)
....++++++||+.+++|+.+++++ .+|..|++++.+++||++||.++..
T Consensus 78 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (357)
T 2uvk_A 78 SEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYF 157 (357)
T ss_dssp TTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhc
Confidence 2345899999999999999999998 8999999999999999999986432
Q ss_pred --------ccCeEEEEECCCCcEEEccCCCCCCcc-eeEEEECCEEEEEeccCCC-ccccEEEEEeC--CCCcEEEccCC
Q psy10286 616 --------IFDSVERYDPKTDEWTSVKPMLTKRCR-LGVAALNNKIYVCGGYDGA-IFLQSVEMYDP--ITDEWKMIASM 683 (748)
Q Consensus 616 --------~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~-~~~~~v~~yd~--~~~~W~~~~~~ 683 (748)
.++++++||+.+++|+.++++|.+|.. |++++++++|||+||.++. ...+++++||+ .+++|+.++.+
T Consensus 158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~ 237 (357)
T 2uvk_A 158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV 237 (357)
T ss_dssp SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS
T ss_pred cccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC
Confidence 458999999999999999999987655 9999999999999997654 35678999986 99999999988
Q ss_pred CCC--CcceEEEEECCEEEEEeCCCCC-----------------CCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 684 NVM--RSRVALVANMGKLWAIGGYDGV-----------------SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 684 p~~--r~~~~~~~~~~~l~v~GG~~~~-----------------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
|.+ |.+|+++.++++|||+||.+.. ....++++||+++++|+.++++|.+|.+|+++++
T Consensus 238 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 315 (357)
T 2uvk_A 238 SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW 315 (357)
T ss_dssp STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE
T ss_pred CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe
Confidence 766 4578899999999999996432 2235799999999999999999999999998875
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-39 Score=369.99 Aligned_cols=243 Identities=17% Similarity=0.205 Sum_probs=206.9
Q ss_pred cceEEEEeCCCCceEEcc-C-----CCcccceeEEEEE--CCEEEEEccCCCCC-CCCeEEEEECCCCeEEEccCCCCCc
Q psy10286 476 LSTVEVFDPLVGRWQMAE-A-----MSMLRSRVGVAVM--KNRLYAFGGYNGSE-RLSTVEEFDPVRRVWNKVSPMCFKR 546 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~-~-----~~~~r~~~~~~~~--~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~r 546 (748)
.+++++||+.+++|..++ + +|.+|.+|+++++ +++|||+||.++.. .++++|+||+.+++|+.++++|.+|
T Consensus 411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 467899999999999887 5 7899999999999 99999999987644 6889999999999999999999999
Q ss_pred ceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEEC---CEEEEEccCCCC--ccc
Q psy10286 547 SAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAFD---SYVYALGGHDGL--SIF 617 (748)
Q Consensus 547 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~---~~iyv~GG~~~~--~~~ 617 (748)
.+|+++++ +++||++||.++.. ++++||+.+++|+.+++ +|.+|.+|++++++ ++||++||.+.. ..+
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~ 567 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVS 567 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBC
T ss_pred ccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeee
Confidence 99999997 99999999987654 89999999999999986 89999999988876 899999998433 567
Q ss_pred CeEEEEECCCCc------EEEccCC-CCCCcceeEEEEC-CEEEEEeccCCCc---cccEEEEEeCCCCcEEEccCC---
Q psy10286 618 DSVERYDPKTDE------WTSVKPM-LTKRCRLGVAALN-NKIYVCGGYDGAI---FLQSVEMYDPITDEWKMIASM--- 683 (748)
Q Consensus 618 ~~~~~yd~~~~~------W~~~~~~-p~~r~~~~~~~~~-~~i~v~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~--- 683 (748)
+++++||+.+++ |+.+.++ +.+|.+|++++++ ++|||+||.++.. ..+++++||+.+++|+.+...
T Consensus 568 ~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~~p~~~ 647 (695)
T 2zwa_A 568 DKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRI 647 (695)
T ss_dssp CEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECCCCHHH
T ss_pred CcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEeeccccc
Confidence 899999999999 9999876 5899999999999 9999999987553 578999999999999965311
Q ss_pred ----CCCCcceEEEEECC-EEEEEeCCCC----CCCCCeEEEEeCCC
Q psy10286 684 ----NVMRSRVALVANMG-KLWAIGGYDG----VSNLPTVEVYDPST 721 (748)
Q Consensus 684 ----p~~r~~~~~~~~~~-~l~v~GG~~~----~~~~~~v~~yd~~~ 721 (748)
+..+.+|+++.+++ +|||+||... ....+.+|.+|..+
T Consensus 648 ~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfsfGt~~n~i~~ldl~~ 694 (695)
T 2zwa_A 648 WEDHSLMLAGFSLVSTSMGTIHIIGGGATCYGFGSVTNVGLKLIAIA 694 (695)
T ss_dssp HHHSCCCCSSCEEECC---CEEEECCEEECTTSCEEECCCEEEEECC
T ss_pred cCCCCccceeeeEEEeCCCEEEEEeCCccCcCccccccceEEEEEEc
Confidence 12466788888766 9999999532 22345778777654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=338.69 Aligned_cols=249 Identities=14% Similarity=0.168 Sum_probs=216.4
Q ss_pred ceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc-C-----CCCCcceeEEEEE--CCEEE
Q psy10286 488 RWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS-P-----MCFKRSAVGAAAL--NDKLY 559 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~-----~~~~r~~~~~~~~--~~~iy 559 (748)
+|...+..|.+|.+++++ ++++|||+||.++ ...+++++||+.+++|+.++ + +|.+|.+|+++++ +++||
T Consensus 378 ~~~~~~~~p~rr~g~~~~-~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~ly 455 (695)
T 2zwa_A 378 QLLECECPINRKFGDVDV-AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLL 455 (695)
T ss_dssp EEEECCCTTCCBSCEEEE-CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEE
T ss_pred eEeccCCCCCCceeEEEE-ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEE
Confidence 455556667777766544 8999999999877 77899999999999999998 5 8999999999999 99999
Q ss_pred EEeCCCCCC-CCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccC--
Q psy10286 560 VCGGYDGVS-SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP-- 635 (748)
Q Consensus 560 v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-- 635 (748)
++||.++.. .++++++||+.+++|+.++++|.+|.+|+++++ +++||++||.++.. ++++||+.+++|+.+++
T Consensus 456 v~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~---~v~~yd~~t~~W~~~~~~g 532 (695)
T 2zwa_A 456 LIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP---AMLLYNVTEEIFKDVTPKD 532 (695)
T ss_dssp EECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC---SEEEEETTTTEEEECCCSS
T ss_pred EEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC---CEEEEECCCCceEEccCCC
Confidence 999987644 689999999999999999999999999999996 99999999987654 89999999999999986
Q ss_pred -CCCCCcceeEEEEC---CEEEEEeccCCC--ccccEEEEEeCCCCc------EEEccCC-CCCCcceEEEEEC-CEEEE
Q psy10286 636 -MLTKRCRLGVAALN---NKIYVCGGYDGA--IFLQSVEMYDPITDE------WKMIASM-NVMRSRVALVANM-GKLWA 701 (748)
Q Consensus 636 -~p~~r~~~~~~~~~---~~i~v~GG~~~~--~~~~~v~~yd~~~~~------W~~~~~~-p~~r~~~~~~~~~-~~l~v 701 (748)
+|.+|.+|++++++ ++|||+||.+.. ...+++++||+.+++ |+.++.+ +.+|.+|+++.++ ++|||
T Consensus 533 ~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv 612 (695)
T 2zwa_A 533 EFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLI 612 (695)
T ss_dssp GGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEE
T ss_pred CCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEE
Confidence 89999999988887 899999998543 567999999999999 9999875 5899999999999 99999
Q ss_pred EeCCCCCC---CCCeEEEEeCCCCceEecCCCCC--------CCcceEEEEe
Q psy10286 702 IGGYDGVS---NLPTVEVYDPSTDSWAFVAPMCA--------HEGGVGVGVI 742 (748)
Q Consensus 702 ~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~~~--------~r~~~~~~~~ 742 (748)
+||.+... ..+++++||+.+++|+.+ ++|. .+.+|+++++
T Consensus 613 ~GG~~~~~~~~~~~~v~~yd~~t~~W~~~-~~p~~~~~~~~p~~~gh~~~~~ 663 (695)
T 2zwa_A 613 VGGTSPSGLFDRTNSIISLDPLSETLTSI-PISRRIWEDHSLMLAGFSLVST 663 (695)
T ss_dssp ECCBCSSCCCCTTTSEEEEETTTTEEEEC-CCCHHHHHHSCCCCSSCEEECC
T ss_pred ECCccCCCCCCCCCeEEEEECCCCeEEEe-eccccccCCCCccceeeeEEEe
Confidence 99987553 578999999999999964 3432 3567887765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=343.04 Aligned_cols=298 Identities=16% Similarity=0.226 Sum_probs=238.1
Q ss_pred eEeecCCCCceeecccccc-c-ceEEec-ccccccCCC-----------ccceEEEEeCCCCceEEccCCCcccceeE--
Q psy10286 440 VEVFDPLVGRWQMAEEETL-S-NAVIST-KSCLTKAGD-----------SLSTVEVFDPLVGRWQMAEAMSMLRSRVG-- 503 (748)
Q Consensus 440 ~~~y~~~~~~W~~~~~~~~-~-~~~~~~-~~~~~~~g~-----------~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-- 503 (748)
++.|||.+++|..+.+.+. . .+++.. ++.++..|. ....+++||+.+++|+.++.+|.+|..++
T Consensus 168 ~~~~dp~~~~W~~~~~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 247 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 247 (656)
T ss_dssp CCCCCTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred cccCCCCCCeeeeeccCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccc
Confidence 6789999999998776433 2 222232 555544431 23479999999999999999988876654
Q ss_pred EEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeC-CCCCCCCceEEEEeCCC
Q psy10286 504 VAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGG-YDGVSSLNTVECYEPDK 580 (748)
Q Consensus 504 ~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~~~~~yd~~~ 580 (748)
+++ .+++||++||.... ++++||+.+++|+.+++||.+|.+|+++++ +|+||++|| .++...++++++||+.+
T Consensus 248 ~~~~~~g~lyv~GG~~~~----~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAK----KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EEECTTSCEEEECSSSTT----CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred ccCCCCCCEEEeCCCCCC----ceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 443 48999999997643 799999999999999999999999999999 999999999 45666789999999999
Q ss_pred CeEEEc-----cCCCCCCcceEEEEECCEEEEEccCCCCc----ccCeEEEEECCCCcEEEccC-CCC------CCccee
Q psy10286 581 DQWRIV-----KSMQKHRSAGGVIAFDSYVYALGGHDGLS----IFDSVERYDPKTDEWTSVKP-MLT------KRCRLG 644 (748)
Q Consensus 581 ~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~----~~~~~~~yd~~~~~W~~~~~-~p~------~r~~~~ 644 (748)
++|+.+ .+++..|.. +++..++++|++||.++.. ..++++.||+.+++|..... .+. ++..++
T Consensus 324 ~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~ 402 (656)
T 1k3i_A 324 KTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGN 402 (656)
T ss_dssp TEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCE
T ss_pred CcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCc
Confidence 999997 456666543 5666799999999986542 36789999999999875432 221 244455
Q ss_pred EEE---ECCEEEEEeccCC---Ccccc---EEEEEeCCCCcEEEcc--CCCCCCcceEEEEE-CCEEEEEeCCCC-----
Q psy10286 645 VAA---LNNKIYVCGGYDG---AIFLQ---SVEMYDPITDEWKMIA--SMNVMRSRVALVAN-MGKLWAIGGYDG----- 707 (748)
Q Consensus 645 ~~~---~~~~i~v~GG~~~---~~~~~---~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~-~~~l~v~GG~~~----- 707 (748)
++. .+++||++||.+. ...++ .+++||+.+++|..+. .||.+|..|+++.+ +++|||+||.+.
T Consensus 403 av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 403 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred eEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 554 4899999999643 23344 8999999999999986 89999999998888 999999999753
Q ss_pred -CCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 708 -VSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 708 -~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
.....++++||+++++|+.+++++.+|.+|+++++
T Consensus 483 ~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~l 518 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 518 (656)
T ss_dssp CCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred CCCcccceEEEcCCCCceeecCCCCCccccccHhhc
Confidence 23467899999999999999999999999998776
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=332.65 Aligned_cols=299 Identities=15% Similarity=0.254 Sum_probs=237.5
Q ss_pred CcEEEEEcCccCCC-----CCCcceEeecCCCCceeecccccc-----cc-eEEecccccccCCC-ccceEEEEeCCCCc
Q psy10286 421 MGHIFAVGGLTKAG-----DSLSTVEVFDPLVGRWQMAEEETL-----SN-AVISTKSCLTKAGD-SLSTVEVFDPLVGR 488 (748)
Q Consensus 421 ~~~i~v~GG~~~~~-----~~~~~~~~y~~~~~~W~~~~~~~~-----~~-~~~~~~~~~~~~g~-~~~~~~~yd~~~~~ 488 (748)
+++||++||..... .....+++||+.+++|..++.... .. .++..++.++..|. ...++++||+.+++
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 89999999975431 234579999999999998875322 11 23345666666654 44589999999999
Q ss_pred eEEccCCCcccceeEEEEE-CCEEEEEcc-CCCCCCCCeEEEEECCCCeEEEc-----cCCCCCcceeEEEEECCEEEEE
Q psy10286 489 WQMAEAMSMLRSRVGVAVM-KNRLYAFGG-YNGSERLSTVEEFDPVRRVWNKV-----SPMCFKRSAVGAAALNDKLYVC 561 (748)
Q Consensus 489 W~~~~~~~~~r~~~~~~~~-~~~iyv~GG-~~~~~~~~~v~~yd~~t~~W~~~-----~~~~~~r~~~~~~~~~~~iyv~ 561 (748)
|.++++|+.+|.+|+++++ +++|||+|| .++....+++++||+.+++|+.+ ++|+.+|.. +++..++++|++
T Consensus 277 W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~ 355 (656)
T 1k3i_A 277 WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLF 355 (656)
T ss_dssp EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEE
T ss_pred eeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccc-ceeecCCceEEE
Confidence 9999999999999999999 999999999 45566788999999999999997 566666653 555579999999
Q ss_pred eCCCCC----CCCceEEEEeCCCCeEEEccC-CCC------CCcceEEEE---ECCEEEEEccCCC---CcccC---eEE
Q psy10286 562 GGYDGV----SSLNTVECYEPDKDQWRIVKS-MQK------HRSAGGVIA---FDSYVYALGGHDG---LSIFD---SVE 621 (748)
Q Consensus 562 GG~~~~----~~~~~~~~yd~~~~~W~~~~~-~~~------~r~~~~~~~---~~~~iyv~GG~~~---~~~~~---~~~ 621 (748)
||.++. ...++++.||+.+++|..... .+. ++..++++. .+++||++||.++ ...++ .++
T Consensus 356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 998653 357899999999999875432 221 233455553 5899999999642 23344 799
Q ss_pred EEECCCCcEEEcc--CCCCCCcceeEEEE-CCEEEEEeccCC------CccccEEEEEeCCCCcEEEccCCCCCCcceEE
Q psy10286 622 RYDPKTDEWTSVK--PMLTKRCRLGVAAL-NNKIYVCGGYDG------AIFLQSVEMYDPITDEWKMIASMNVMRSRVAL 692 (748)
Q Consensus 622 ~yd~~~~~W~~~~--~~p~~r~~~~~~~~-~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (748)
+||+.+++|+.+. +||.+|..|+++++ +++|||+||.+. ....+++++||+.+++|+.+++++.+|.+|++
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~ 515 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSI 515 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEE
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccH
Confidence 9999999999986 89999999999988 999999999752 34578999999999999999999999999998
Q ss_pred EEE--CCEEEEEeCCCCC---CCCCeEEEEeCC
Q psy10286 693 VAN--MGKLWAIGGYDGV---SNLPTVEVYDPS 720 (748)
Q Consensus 693 ~~~--~~~l~v~GG~~~~---~~~~~v~~yd~~ 720 (748)
+++ +++|||+||.... ....++++|.|.
T Consensus 516 a~ll~dg~v~v~GG~~~~~~~~~~~~~e~~~Pp 548 (656)
T 1k3i_A 516 SLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 548 (656)
T ss_dssp EEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred hhcCCCcEEEecCCCCCCCCCCCeeEEEEEeCh
Confidence 888 9999999996332 234578888874
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-27 Score=220.68 Aligned_cols=155 Identities=21% Similarity=0.353 Sum_probs=126.0
Q ss_pred hHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccccccc
Q psy10286 57 LFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQA 136 (748)
Q Consensus 57 ~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (748)
+.+.+.+++.++++++.+|||+|.++|++|+|||.||+++|+||++||.+++.|+....+.+
T Consensus 17 p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l------------------ 78 (172)
T 3htm_A 17 PECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI------------------ 78 (172)
T ss_dssp CCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEE------------------
T ss_pred CHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEe------------------
Confidence 34578889999999999999999999999999999999999999999999888776666665
Q ss_pred ccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhh
Q psy10286 137 MFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYV 216 (748)
Q Consensus 137 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~ 216 (748)
+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|+++|.+.+
T Consensus 79 ----------------~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l---------- 132 (172)
T 3htm_A 79 ----------------NDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNL---------- 132 (172)
T ss_dssp ----------------CSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTC----------
T ss_pred ----------------cCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhC----------
Confidence 899999999999999999999888888888888888888888777777766654
Q ss_pred hhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHH
Q psy10286 217 LFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKY 296 (748)
Q Consensus 217 ~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~ 296 (748)
+.+||+.++.+|+.++..+|.+.|++|
T Consensus 133 -----------------------------------------------------~~~n~~~~~~~A~~~~~~~L~~~~~~~ 159 (172)
T 3htm_A 133 -----------------------------------------------------SVENAAEILILADLHSADQLKTQAVDF 159 (172)
T ss_dssp -----------------------------------------------------CTTTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----------------------------------------------------CHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 444555556667777778888888888
Q ss_pred HHHhhhhhccCc
Q psy10286 297 VQQYFHEVSMSD 308 (748)
Q Consensus 297 i~~~~~~l~~~~ 308 (748)
|.+|+.++++++
T Consensus 160 i~~~~~~v~~s~ 171 (172)
T 3htm_A 160 INYHATDVLETS 171 (172)
T ss_dssp HHHTC-------
T ss_pred HHHHHHHHHcCC
Confidence 888888877653
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-25 Score=200.53 Aligned_cols=128 Identities=25% Similarity=0.503 Sum_probs=117.2
Q ss_pred CccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheeh
Q psy10286 47 DECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIV 126 (748)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~ 126 (748)
.....+....|.+.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+++.+. .
T Consensus 9 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~--~------------ 74 (138)
T 2z8h_A 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE--L------------ 74 (138)
T ss_dssp TCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTT--E------------
T ss_pred CCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCC--c------------
Confidence 34566788899999999999999999999999999999999999999999999999999876542 1
Q ss_pred hhccccccccccccccccccceeeeec-CCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 127 LAATIPYFQAMFTSDMAESKQREITMQ-GIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
.|.++ ++++++|+.+|+|+|||++.++.+++.+|+.+|++||++.|++.|++||.++
T Consensus 75 ----------------------~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 132 (138)
T 2z8h_A 75 ----------------------TVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFK 132 (138)
T ss_dssp ----------------------EEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCC
T ss_pred ----------------------eEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34444 8999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q psy10286 206 FHPNN 210 (748)
Q Consensus 206 l~~~n 210 (748)
+..+|
T Consensus 133 l~~sn 137 (138)
T 2z8h_A 133 FLDST 137 (138)
T ss_dssp CSCCC
T ss_pred ccccc
Confidence 98876
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=192.57 Aligned_cols=118 Identities=35% Similarity=0.556 Sum_probs=106.2
Q ss_pred ecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccc
Q psy10286 52 FQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATI 131 (748)
Q Consensus 52 ~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 131 (748)
...+.|.+.+++.++++++++.+|||+|.++|++|+|||+||+++|+||++||.+++.|+....+.+
T Consensus 3 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l------------- 69 (120)
T 2if5_A 3 IPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEI------------- 69 (120)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEEC-------------
T ss_pred cCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEe-------------
Confidence 4567899999999999999999999999999999999999999999999999999887776665555
Q ss_pred cccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhh
Q psy10286 132 PYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203 (748)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~ 203 (748)
+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.
T Consensus 70 ---------------------~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L~ 120 (120)
T 2if5_A 70 ---------------------DFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLD 120 (120)
T ss_dssp ---------------------CSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred ---------------------CCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999973
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-25 Score=202.82 Aligned_cols=134 Identities=21% Similarity=0.418 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccccccccc
Q psy10286 59 SQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMF 138 (748)
Q Consensus 59 ~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (748)
+.+.+++.++++++.+|||+|.++|++|+|||.||+++|+||++||.+++.|+....+.+
T Consensus 10 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l-------------------- 69 (145)
T 4eoz_A 10 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI-------------------- 69 (145)
T ss_dssp CCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEE--------------------
T ss_pred HHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEe--------------------
Confidence 568888999999999999999999999999999999999999999999887766555555
Q ss_pred ccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhh
Q psy10286 139 TSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLF 218 (748)
Q Consensus 139 ~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~ 218 (748)
+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|+++|.+.++++||+.++.+|
T Consensus 70 --------------~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A 135 (145)
T 4eoz_A 70 --------------NDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILA 135 (145)
T ss_dssp --------------CSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC-----------------
T ss_pred --------------cCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999888777
Q ss_pred hhhHHHHH
Q psy10286 219 SCRAMEAL 226 (748)
Q Consensus 219 ~~~~~~~l 226 (748)
..+.+..|
T Consensus 136 ~~~~~~~L 143 (145)
T 4eoz_A 136 DLHSADQL 143 (145)
T ss_dssp --------
T ss_pred HHhCHHHh
Confidence 66655443
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-25 Score=198.31 Aligned_cols=125 Identities=17% Similarity=0.491 Sum_probs=108.3
Q ss_pred CccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheeh
Q psy10286 47 DECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIV 126 (748)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~ 126 (748)
.+...+..+.|.+.++++|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+++.+.
T Consensus 20 ~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~--------------- 84 (144)
T 2ppi_A 20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD--------------- 84 (144)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC------------------
T ss_pred eeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCCccc---------------
Confidence 34567888899999999999999999999999999999999999999999999999999877652
Q ss_pred hhccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhh
Q psy10286 127 LAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203 (748)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~ 203 (748)
++...+|.++++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|++||+
T Consensus 85 -----------------e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 85 -----------------DGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp -------------------CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred -----------------cCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 112234555999999999999999999999999999999999999999999999999974
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-24 Score=190.68 Aligned_cols=115 Identities=22% Similarity=0.414 Sum_probs=104.4
Q ss_pred cchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccc
Q psy10286 53 QQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIP 132 (748)
Q Consensus 53 ~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 132 (748)
..+.|.+.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+++ ...
T Consensus 3 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~----~~~----------------- 61 (119)
T 3b84_A 3 SFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGS----GGS----------------- 61 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTT----CCC-----------------
T ss_pred ccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCC----CCe-----------------
Confidence 35689999999999999999999999999999999999999999999999998764 233
Q ss_pred ccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 133 YFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.+.
T Consensus 62 -----------------i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 62 -----------------VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp -----------------EEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred -----------------EEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 44489999999999999999999999999999999999999999999999999763
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=223.84 Aligned_cols=154 Identities=21% Similarity=0.360 Sum_probs=119.7
Q ss_pred HhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccc
Q psy10286 58 FSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAM 137 (748)
Q Consensus 58 ~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (748)
.+.+.++|.++++++.+|||+|.++|++|+|||+|||++|+||++||.+++.|+....|.+
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l------------------- 218 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEI------------------- 218 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEE-------------------
T ss_pred CchHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEe-------------------
Confidence 3578899999999999999999999999999999999999999999999887776665555
Q ss_pred cccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhh
Q psy10286 138 FTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVL 217 (748)
Q Consensus 138 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~ 217 (748)
+++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|+++|.+.
T Consensus 219 ---------------~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~------------ 271 (312)
T 3hqi_A 219 ---------------NDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSN------------ 271 (312)
T ss_dssp ---------------CSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------------
T ss_pred ---------------cCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHcc------------
Confidence 99999999999999999999888888888888888888877777777776665
Q ss_pred hhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHH
Q psy10286 218 FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYV 297 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i 297 (748)
++.+||+.++.+|+.+++.+|.++|++||
T Consensus 272 ---------------------------------------------------~~~~n~~~~l~~A~~~~~~~L~~~~~~~i 300 (312)
T 3hqi_A 272 ---------------------------------------------------LSVENAAEILILADLHSADQLKTQAVDFI 300 (312)
T ss_dssp ---------------------------------------------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555566677777777888888888
Q ss_pred HHhhhhhccCc
Q psy10286 298 QQYFHEVSMSD 308 (748)
Q Consensus 298 ~~~~~~l~~~~ 308 (748)
..|+.++++++
T Consensus 301 ~~~~~~v~~s~ 311 (312)
T 3hqi_A 301 NYHATDVLETS 311 (312)
T ss_dssp HHTC-------
T ss_pred HHHHHHHhhCC
Confidence 88887776643
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-24 Score=190.68 Aligned_cols=122 Identities=27% Similarity=0.470 Sum_probs=111.5
Q ss_pred cceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhh
Q psy10286 49 CLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLA 128 (748)
Q Consensus 49 ~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 128 (748)
...+..+.|.+.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+++.| ..
T Consensus 4 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e-~~--------------- 67 (127)
T 1r29_A 4 DSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKR-NL--------------- 67 (127)
T ss_dssp -CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTT-TC---------------
T ss_pred CccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCccC-CC---------------
Confidence 34567789999999999999999999999999999999999999999999999999987765 22
Q ss_pred ccccccccccccccccccceeeee-cCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 129 ATIPYFQAMFTSDMAESKQREITM-QGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
..|.+ +++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|++||.++
T Consensus 68 -------------------~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 68 -------------------SVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp -------------------SEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred -------------------CEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34666 78999999999999999999999999999999999999999999999999864
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-24 Score=193.14 Aligned_cols=119 Identities=25% Similarity=0.515 Sum_probs=109.0
Q ss_pred ccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehh
Q psy10286 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVL 127 (748)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~ 127 (748)
....+.+..|.+.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+.+.+ ..
T Consensus 6 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e--~~------------- 70 (125)
T 3ohu_A 6 PMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKN--DL------------- 70 (125)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCS--SC-------------
T ss_pred cceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCC--Cc-------------
Confidence 355677889999999999999999999999999999999999999999999999999987655 23
Q ss_pred hccccccccccccccccccceeeeecC-CCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHh
Q psy10286 128 AATIPYFQAMFTSDMAESKQREITMQG-IDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 202 (748)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l 202 (748)
+|.+++ +++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||
T Consensus 71 ---------------------~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 71 ---------------------VVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp ---------------------EEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred ---------------------EEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 344477 999999999999999999999999999999999999999999998875
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=191.42 Aligned_cols=120 Identities=28% Similarity=0.532 Sum_probs=107.6
Q ss_pred ccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehh
Q psy10286 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVL 127 (748)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~ 127 (748)
+...+.++.|.+.+++.|+++++++.+|||+|.++|++|+|||+|||++|+||++||.+++.+.
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~---------------- 66 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE---------------- 66 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---C----------------
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCC----------------
Confidence 4566788899999999999999999999999999999999999999999999999999876543
Q ss_pred hccccccccccccccccccceeeee-cCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhh
Q psy10286 128 AATIPYFQAMFTSDMAESKQREITM-QGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203 (748)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~ 203 (748)
..|.+ +++++++|+.+|+|+|||++.++.+++.+++.+|++||++.|++.|++||+
T Consensus 67 --------------------~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 67 --------------------LNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp --------------------EEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred --------------------ceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 13444 489999999999999999999999999999999999999999999999975
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-24 Score=193.68 Aligned_cols=117 Identities=21% Similarity=0.377 Sum_probs=101.5
Q ss_pred chhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccc
Q psy10286 54 QLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPY 133 (748)
Q Consensus 54 ~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 133 (748)
+..|.+.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+++ ..
T Consensus 5 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~----~~------------------- 61 (135)
T 2yy9_A 5 SSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGT----GG------------------- 61 (135)
T ss_dssp --CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC--------C-------------------
T ss_pred cccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCC----CC-------------------
Confidence 4578999999999999999999999999999999999999999999999998765 22
Q ss_pred cccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 134 FQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 134 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
+|.++++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|++||.+.+..
T Consensus 62 ---------------~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 62 ---------------SVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp ---------------CEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred ---------------eEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 344589999999999999999999999999999999999999999999999999987544
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-24 Score=186.57 Aligned_cols=115 Identities=25% Similarity=0.485 Sum_probs=103.1
Q ss_pred chhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccc
Q psy10286 54 QLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPY 133 (748)
Q Consensus 54 ~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 133 (748)
.+.|.+.++++++++++++.+|||+|.++|++|+|||+||+++|+||++||.++ ....+.+
T Consensus 2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~----~~~~i~l--------------- 62 (116)
T 2vpk_A 2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRST----SENNVFL--------------- 62 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTC----CCSCEEC---------------
T ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCC----CCCeEEe---------------
Confidence 357899999999999999999999999999999999999999999999999875 1223333
Q ss_pred cccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhh
Q psy10286 134 FQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 204 (748)
Q Consensus 134 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~ 204 (748)
.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.+
T Consensus 63 -----------------~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (116)
T 2vpk_A 63 -----------------DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMED 116 (116)
T ss_dssp -----------------CTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred -----------------ecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence 113999999999999999999999999999999999999999999999999864
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-24 Score=186.20 Aligned_cols=117 Identities=23% Similarity=0.475 Sum_probs=107.6
Q ss_pred ceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhc
Q psy10286 50 LVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAA 129 (748)
Q Consensus 50 ~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 129 (748)
..+.++.|.+.+.+.++++++++.+|||+|.++|++|+|||+||+++|+||++||.++ ...
T Consensus 4 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~-----~~~-------------- 64 (121)
T 1buo_A 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN-----SQH-------------- 64 (121)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC-----CSE--------------
T ss_pred eeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC-----CcE--------------
Confidence 3467788999999999999999999999999999999999999999999999999763 223
Q ss_pred cccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 130 TIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.+.
T Consensus 65 --------------------i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 120 (121)
T 1buo_A 65 --------------------YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI 120 (121)
T ss_dssp --------------------EEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --------------------EEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 44489999999999999999999999999999999999999999999999999863
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-24 Score=189.46 Aligned_cols=120 Identities=27% Similarity=0.550 Sum_probs=103.4
Q ss_pred ccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehh
Q psy10286 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVL 127 (748)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~ 127 (748)
+...+..+.|.+.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+. ...
T Consensus 7 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~----~~~------------- 69 (129)
T 3ga1_A 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS----RSA------------- 69 (129)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHC----CCS-------------
T ss_pred ceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCC----CCC-------------
Confidence 456677889999999999999999999999999999999999999999999999999875 222
Q ss_pred hccccccccccccccccccceeeeec-CCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 128 AATIPYFQAMFTSDMAESKQREITMQ-GIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
+|.++ ++++++|+.+|+|+|||++.++.+++.+++.+|++||++.|++.|++||.+.
T Consensus 70 ---------------------~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 70 ---------------------VVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp ---------------------EEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred ---------------------EEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 45556 8999999999999999999999999999999999999999999999999874
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-24 Score=185.41 Aligned_cols=113 Identities=27% Similarity=0.527 Sum_probs=104.2
Q ss_pred ecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccc
Q psy10286 52 FQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATI 131 (748)
Q Consensus 52 ~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 131 (748)
+..+.|.+.+++.++++++++.+|||+|.++|++|+|||+||+++|+||++||.+. .
T Consensus 5 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~-----~------------------ 61 (119)
T 2q81_A 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ-----K------------------ 61 (119)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC-----C------------------
T ss_pred cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----C------------------
Confidence 44578999999999999999999999999999999999999999999999999762 1
Q ss_pred cccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhh
Q psy10286 132 PYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203 (748)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~ 203 (748)
.+|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.
T Consensus 62 ----------------~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 62 ----------------DVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp ----------------SGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----------------CEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 13445889999999999999999999999999999999999999999999999985
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-23 Score=179.58 Aligned_cols=104 Identities=27% Similarity=0.476 Sum_probs=91.7
Q ss_pred HHhcCCcccEEEEECC----eEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccc
Q psy10286 68 IRRQGKLCDVTIKVDD----QSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMA 143 (748)
Q Consensus 68 l~~~~~~~Dv~i~~~~----~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (748)
|++++.+|||+|.+++ ++|+|||.||+++|+||++||.+++.|+. ..+.+
T Consensus 2 l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l------------------------- 55 (109)
T 2vkp_A 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHI------------------------- 55 (109)
T ss_dssp CTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEE-------------------------
T ss_pred cccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEe-------------------------
Confidence 5789999999999988 89999999999999999999999887765 55555
Q ss_pred cccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcc
Q psy10286 144 ESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRF 206 (748)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l 206 (748)
+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||.+++
T Consensus 56 ---------~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 56 ---------PDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp ---------TTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------CCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 899999999999999999999999999999999999999999999999998753
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-22 Score=173.05 Aligned_cols=104 Identities=25% Similarity=0.349 Sum_probs=90.9
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQ 135 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (748)
.+...+++.|+ ++++.+|||+|.++|++|+|||+|||++|+||++ ...
T Consensus 14 ~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~---------~~~--------------------- 61 (119)
T 3m5b_A 14 YGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR---------RGQ--------------------- 61 (119)
T ss_dssp TTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC---------CEE---------------------
T ss_pred cchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc---------CCC---------------------
Confidence 45566777775 6779999999999999999999999999999984 112
Q ss_pred cccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhh
Q psy10286 136 AMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 204 (748)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~ 204 (748)
+|.++++++++|+.+|+|+|||++.++.+|+++++.+|++||++.|++.|++++.+
T Consensus 62 -------------~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 62 -------------WALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp -------------EECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred -------------EEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 34559999999999999999999999999999999999999999999999999876
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-22 Score=171.83 Aligned_cols=110 Identities=23% Similarity=0.480 Sum_probs=100.1
Q ss_pred ccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehh
Q psy10286 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVL 127 (748)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~ 127 (748)
....+.++.|.+.+++.++++++++.+|||+|.++|++|+|||+|||++|+||++||.++ ..
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~-----~~------------- 66 (116)
T 3fkc_A 5 KLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA-----GQ------------- 66 (116)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC-----CS-------------
T ss_pred ceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC-----CC-------------
Confidence 345667888999999999999999999999999999999999999999999999999874 22
Q ss_pred hccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeE-EeechhHHHHHHHHHHhcchhHHH
Q psy10286 128 AATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRV-TIHSQNVQSLMVVASFLQMQKVAD 196 (748)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~-~i~~~~v~~ll~~A~~l~i~~l~~ 196 (748)
+|.++++++++|+.+|+|+|||++ .++.+++.+++.+|++||++.|++
T Consensus 67 ---------------------~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 67 ---------------------VVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp ---------------------EEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred ---------------------EEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 344589999999999999999999 799999999999999999999874
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-15 Score=129.20 Aligned_cols=95 Identities=20% Similarity=0.289 Sum_probs=90.6
Q ss_pred hhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhc
Q psy10286 266 KKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKH 345 (748)
Q Consensus 266 ~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~ 345 (748)
.++++++||++++.+|+.+++.+|.++|.+||.+||.++.++++|..|+.+.|..+++++ +.+|++||+|+++|+++
T Consensus 5 ~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~sd---v~~E~~vf~av~~Wv~~ 81 (105)
T 2eqx_A 5 SSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG---VPCSQNPTEAIEAWINF 81 (105)
T ss_dssp CCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHHTC---EETTSCHHHHHHHHHHT
T ss_pred hccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHcCC---CCCHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999999999999999999999999997 67999999999999999
Q ss_pred CccCCCCCHHHHHhhccC
Q psy10286 346 NASERAPSLPRLLAAVRL 363 (748)
Q Consensus 346 ~~~~r~~~~~~l~~~vR~ 363 (748)
+.+.|.++++.++++||.
T Consensus 82 d~~~R~~~~~~Ll~~VR~ 99 (105)
T 2eqx_A 82 NKEEREAFAESLRTSLKE 99 (105)
T ss_dssp THHHHHHHHHHHHHHCCE
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999999984
|
| >4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* | Back alignment and structure |
|---|
Probab=99.10 E-value=8.2e-11 Score=97.63 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=64.2
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcc--cccccccceeeeecchheehhhccccccccccccccccccceeeeec
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTS--DMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQ 153 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 153 (748)
|+|+. +|++|.+||.+ |+.|+||++||.+ .+.|.....| .++
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I----------------------------------~l~ 48 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEV----------------------------------NFR 48 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEE----------------------------------ECT
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCce----------------------------------ECC
Confidence 56665 78999999999 9999999999986 4444444444 449
Q ss_pred CCCHHHHHHHHHhhh-----c---eeEE---eechhHHHHHHHHHHhcc
Q psy10286 154 GIDAVAMEALINFVY-----S---GRVT---IHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 154 ~~~~~~~~~~l~flY-----t---g~~~---i~~~~v~~ll~~A~~l~i 191 (748)
++++.+++.+++|+| + +++. ++.+++.+|+.||++|++
T Consensus 49 ~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 49 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 97 (97)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhCC
Confidence 999999999999999 5 7777 999999999999999984
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-10 Score=98.51 Aligned_cols=101 Identities=10% Similarity=0.228 Sum_probs=84.2
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|.. +|++|.+||.+ |..|++|++||...- ...|.+ ++|
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~----~~~Ipl----------------------------------~~V 44 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVPL----------------------------------PNV 44 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEEC----------------------------------TTC
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC----CCceec----------------------------------CCc
Confidence 67776 88999999998 889999999997631 223444 999
Q ss_pred CHHHHHHHHHhhhcee--------------------------EEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCC
Q psy10286 156 DAVAMEALINFVYSGR--------------------------VTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN 209 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~--------------------------~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ 209 (748)
+..+++.+++|+|... +.++.+++.+|+.||++|+++.|.+.|+.++...+.-.
T Consensus 45 ~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgk 124 (141)
T 1fs1_B 45 NAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGK 124 (141)
T ss_dssp CHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999876 56788899999999999999999999999999876665
Q ss_pred cccchhh
Q psy10286 210 NVLDYYV 216 (748)
Q Consensus 210 ncl~i~~ 216 (748)
+.-.+..
T Consensus 125 t~eeiR~ 131 (141)
T 1fs1_B 125 TPEEIRK 131 (141)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 5544433
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-09 Score=99.09 Aligned_cols=95 Identities=15% Similarity=0.297 Sum_probs=52.4
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|.. +|+.|.+||.+ |..|++|+.||.... ... .|.+++|
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~---~~~----------------------------------~Ipl~~V 47 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC---VDN----------------------------------GVPLPNV 47 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC-------------------------------------------------CCTTS
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC---CCC----------------------------------ceeCCcC
Confidence 66664 79999999998 889999999997631 112 3445999
Q ss_pred CHHHHHHHHHhhhcee---------------------------EEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 156 DAVAMEALINFVYSGR---------------------------VTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~---------------------------~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
+..+++.+++|+|+.. +.++.+++.+|+.||++|+|+.|.+.|+.++...+.-
T Consensus 48 ~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikg 127 (160)
T 2p1m_A 48 TSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKG 127 (160)
T ss_dssp CHHHHHHHHHC------------------------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 9999999999999986 4678889999999999999999999999999887644
Q ss_pred C
Q psy10286 209 N 209 (748)
Q Consensus 209 ~ 209 (748)
.
T Consensus 128 k 128 (160)
T 2p1m_A 128 K 128 (160)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-09 Score=99.35 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=42.0
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
...++.+++|+|+|.+.+..+++.+++.+|++|+++.|++.|+++|.+.++.+||+.++.+|+.|++.+|.
T Consensus 74 ~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~Lk 144 (145)
T 4eoz_A 74 PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLK 144 (145)
T ss_dssp HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC--------------------------
T ss_pred HHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHhc
Confidence 34567799999999999999999999999999999999999999999999999999999999999988775
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-05 Score=78.73 Aligned_cols=262 Identities=10% Similarity=-0.014 Sum_probs=155.0
Q ss_pred CcceEeecCCCCceeecc-----ccc---ccceEEecccccccCCCccceEEEEeCCCCce-EEccCCCcccceeEEEE-
Q psy10286 437 LSTVEVFDPLVGRWQMAE-----EET---LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRW-QMAEAMSMLRSRVGVAV- 506 (748)
Q Consensus 437 ~~~~~~y~~~~~~W~~~~-----~~~---~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~- 506 (748)
-.++.+||+.++++...- ... ....+...++.++......+.+..+|+.+.+- ..++....| +.++.
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p---~~i~~~ 92 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP---RYIHFL 92 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE---EEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC---cEEEEe
Confidence 367899999998886421 111 12334444555665555557899999998876 334333232 34444
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC----cceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK----RSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ 582 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 582 (748)
.++++|+.... .+.+.++|+.+++-...-+.... ....+++..++++|+..- ..-+.+.++|+.+++
T Consensus 93 ~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~----~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 93 SDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW----SYQNRILKIDTETDK 163 (328)
T ss_dssp ETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC----TTCCEEEEEETTTTE
T ss_pred CCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC----CCCCEEEEEECCCCe
Confidence 68899998743 35799999999875432121110 022344457899999852 013589999999988
Q ss_pred EEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcc-----cCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEE
Q psy10286 583 WRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSI-----FDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYV 654 (748)
Q Consensus 583 W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~-----~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 654 (748)
....-+.. ..-+.++. -+|++|+....+.... .+.++++|+.+.+....-..+....-.+++.- ++.+|+
T Consensus 164 ~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 164 VVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred EEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence 65432221 11122333 3688888764321111 36899999999886643334333333445544 567888
Q ss_pred EeccCCCccccEEEEEeCCCCcEEEccCCCC-CCcceEEEE--ECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 655 CGGYDGAIFLQSVEMYDPITDEWKMIASMNV-MRSRVALVA--NMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
..+ .++++|+.+.+.......+. ...-.++++ .+++|||....+.. ....|.+||+..
T Consensus 242 ~~~--------~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~-~~~~V~v~d~~g 302 (328)
T 3dsm_A 242 INN--------DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ-QQGIVYRYSPQG 302 (328)
T ss_dssp ESS--------SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS-SEEEEEEECTTC
T ss_pred Ecc--------EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc-cCCEEEEECCCC
Confidence 753 78999998877532222222 223344444 36899998732111 124799999984
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00016 Score=74.89 Aligned_cols=223 Identities=11% Similarity=0.012 Sum_probs=138.1
Q ss_pred cceEEEEeCCCCceEEcc-----CCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeE-EEccCCCCCccee
Q psy10286 476 LSTVEVFDPLVGRWQMAE-----AMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVW-NKVSPMCFKRSAV 549 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~r~~~ 549 (748)
-..+..||+.++++..-- ..+.......++..++++|+.... .+.+.++|+.+.+- ..++... ..+
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~~---~p~ 87 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGFT---SPR 87 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECCS---SEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCCC---CCc
Confidence 467999999999876521 112223445667789999998752 35799999998875 3343322 233
Q ss_pred EEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC----CcceEEEEECCEEEEEccCCCCcccCeEEEEE
Q psy10286 550 GAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH----RSAGGVIAFDSYVYALGGHDGLSIFDSVERYD 624 (748)
Q Consensus 550 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 624 (748)
.++. -++++|+.... -..+.++|+.+++-...-+.... ..-..++..++++|+..-. ..+.+.++|
T Consensus 88 ~i~~~~~g~lyv~~~~-----~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~----~~~~v~viD 158 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIW-----DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS----YQNRILKID 158 (328)
T ss_dssp EEEEEETTEEEEEEBS-----CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT----TCCEEEEEE
T ss_pred EEEEeCCCeEEEEECC-----CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC----CCCEEEEEE
Confidence 4444 68899998743 26899999999875432222210 0223445578999998521 135799999
Q ss_pred CCCCcEEEccCCCCCCcceeEEE-ECCEEEEEeccCCCc-----cccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--C
Q psy10286 625 PKTDEWTSVKPMLTKRCRLGVAA-LNNKIYVCGGYDGAI-----FLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--M 696 (748)
Q Consensus 625 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~-----~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 696 (748)
+.+++....-+. ...-++++. -++++|+....+... ..+.++++|+.+.+....-..+....-..++.. +
T Consensus 159 ~~t~~~~~~i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~ 236 (328)
T 3dsm_A 159 TETDKVVDELTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTR 236 (328)
T ss_dssp TTTTEEEEEEEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTS
T ss_pred CCCCeEEEEEEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCC
Confidence 999876543221 111123333 368888876322111 136899999999876643233333333444444 5
Q ss_pred CEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 697 ~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
+.+|+..+ .+++||+.+++..
T Consensus 237 ~~lyv~~~--------~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 237 DTLYWINN--------DIWRMPVEADRVP 257 (328)
T ss_dssp CEEEEESS--------SEEEEETTCSSCC
T ss_pred CEEEEEcc--------EEEEEECCCCcee
Confidence 77888743 6999999887753
|
| >2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-07 Score=84.12 Aligned_cols=54 Identities=28% Similarity=0.635 Sum_probs=49.9
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCC
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNN 273 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n 273 (748)
...++.+++|+|+|.+.+..+|+.+|+.+|++|+++.|++.|++||.++++.+|
T Consensus 84 ~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn 137 (138)
T 2z8h_A 84 VKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST 137 (138)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence 345667999999999999999999999999999999999999999999998776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00038 Score=67.46 Aligned_cols=191 Identities=14% Similarity=0.120 Sum_probs=127.7
Q ss_pred cCCCcccce--eEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCC
Q psy10286 493 EAMSMLRSR--VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSL 570 (748)
Q Consensus 493 ~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 570 (748)
...|..... .++...++.+|+..|..+ .+.+.++|+.+++=...-+++..-.+.+++..+++||+.... -
T Consensus 13 ~~~phd~~~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~ 84 (243)
T 3mbr_X 13 KRYPHDTTAFTEGLFYLRGHLYESTGETG---RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----N 84 (243)
T ss_dssp EEEECCTTCCEEEEEEETTEEEEEECCTT---SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----S
T ss_pred EEcCCCCccccccEEEECCEEEEECCCCC---CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----C
Confidence 333444433 477778999999988654 357899999999877666777777778889999999998653 3
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-c--cCCCCC-CcceeEE
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-V--KPMLTK-RCRLGVA 646 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~--~~~p~~-r~~~~~~ 646 (748)
+.+++||+.+.+-. ...+.+..+.+++.-++++|+--|. +.++.+||++.+-.. + ...+.+ +..-.+.
T Consensus 85 ~~v~v~D~~tl~~~--~ti~~~~~Gwglt~dg~~L~vSdgs------~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 85 HEGFVYDLATLTPR--ARFRYPGEGWALTSDDSHLYMSDGT------AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp SEEEEEETTTTEEE--EEEECSSCCCEEEECSSCEEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred CEEEEEECCcCcEE--EEEeCCCCceEEeeCCCEEEEECCC------CeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 68999999886643 3333344567777778889998663 579999999976432 2 122222 1222344
Q ss_pred EECCEEEEEeccCCCccccEEEEEeCCCCc---EEEccCCCC-------CC--cceEEEEE--CCEEEEEeC
Q psy10286 647 ALNNKIYVCGGYDGAIFLQSVEMYDPITDE---WKMIASMNV-------MR--SRVALVAN--MGKLWAIGG 704 (748)
Q Consensus 647 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~-------~r--~~~~~~~~--~~~l~v~GG 704 (748)
..+++||+--- ..+.|.+.|+++.+ |..++.+.. +. .--+.+.. ++++||.|-
T Consensus 157 ~~~G~lyanvw-----~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WVNGELLANVW-----LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EETTEEEEEET-----TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EeCCEEEEEEC-----CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 56899885542 24799999999976 555554321 11 11344443 589999985
|
| >2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-07 Score=81.31 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=45.4
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcC
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRF 269 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l 269 (748)
...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.++|
T Consensus 60 ~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l 109 (109)
T 2vkp_A 60 PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109 (109)
T ss_dssp HHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence 34667799999999999999999999999999999999999999998643
|
| >2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.8e-07 Score=81.02 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=44.0
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCC
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 271 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~ 271 (748)
...|+.+++|+|+|.+.+..+|+.+|+.+|++|+++.|++.|++||.+++..
T Consensus 70 ~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~ 121 (135)
T 2yy9_A 70 AEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVG 121 (135)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccC
Confidence 3466779999999999999999999999999999999999999999876543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0029 Score=66.61 Aligned_cols=259 Identities=14% Similarity=0.147 Sum_probs=150.5
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCc--eeeccc----------ccccceEEecccccccCCCccceEEEEeCCCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGR--WQMAEE----------ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVG 487 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~--W~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~ 487 (748)
.++.||+.... ..+.+||+.+++ |..... ..........++.++... ....+..+|..++
T Consensus 52 ~~~~v~~~~~~-------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~g~l~a~d~~tG 123 (376)
T 3q7m_A 52 ADNVVYAADRA-------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGS-EKAQVYALNTSDG 123 (376)
T ss_dssp ETTEEEEECTT-------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEE-TTSEEEEEETTTC
T ss_pred ECCEEEEEcCC-------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEc-CCCEEEEEECCCC
Confidence 57788886532 368899987654 654332 112222333344444332 2357999999887
Q ss_pred c--eEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCC--CcceeEEEEECCEEEEE
Q psy10286 488 R--WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCF--KRSAVGAAALNDKLYVC 561 (748)
Q Consensus 488 ~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~ 561 (748)
+ |+.-..-. ...+.++.++.+|+..+ ...++.||+.+++ |+.....+. .+...+.+..++.+|+
T Consensus 124 ~~~W~~~~~~~---~~~~p~~~~~~v~v~~~------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~- 193 (376)
T 3q7m_A 124 TVAWQTKVAGE---ALSRPVVSDGLVLIHTS------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVV- 193 (376)
T ss_dssp CEEEEEECSSC---CCSCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEE-
T ss_pred CEEEEEeCCCc---eEcCCEEECCEEEEEcC------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEE-
Confidence 5 75532211 11223455888887543 2479999998775 876543221 1222334455788776
Q ss_pred eCCCCCCCCceEEEEeCCCCe--EEEccCCCCCC--------cceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--c
Q psy10286 562 GGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHR--------SAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--E 629 (748)
Q Consensus 562 GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~ 629 (748)
|..+ ..+..+|+.+++ |+.-...+... .....+..++.+|+.+.. ..+.++|+.+. .
T Consensus 194 g~~~-----g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~------g~l~~~d~~tG~~~ 262 (376)
T 3q7m_A 194 GGDN-----GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYN------GNLTALDLRSGQIM 262 (376)
T ss_dssp CCTT-----TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTT------SCEEEEETTTCCEE
T ss_pred EcCC-----CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecC------cEEEEEECCCCcEE
Confidence 3321 468999987664 77654332211 223445568888886531 36899999876 4
Q ss_pred EEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeCCCC
Q psy10286 630 WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
|+.-.. ...+.+..++.||+... ...+++||+++.+ |+.-. ++ .+...+.+..++.||+...
T Consensus 263 w~~~~~-----~~~~~~~~~~~l~~~~~------~g~l~~~d~~tG~~~w~~~~-~~-~~~~~~~~~~~~~l~v~~~--- 326 (376)
T 3q7m_A 263 WKRELG-----SVNDFIVDGNRIYLVDQ------NDRVMALTIDGGVTLWTQSD-LL-HRLLTSPVLYNGNLVVGDS--- 326 (376)
T ss_dssp EEECCC-----CEEEEEEETTEEEEEET------TCCEEEEETTTCCEEEEECT-TT-TSCCCCCEEETTEEEEECT---
T ss_pred eeccCC-----CCCCceEECCEEEEEcC------CCeEEEEECCCCcEEEeecc-cC-CCcccCCEEECCEEEEEeC---
Confidence 765321 12345566889998764 2468999998765 76531 11 2223344556888887642
Q ss_pred CCCCCeEEEEeCCCCc--eEe
Q psy10286 708 VSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~--W~~ 726 (748)
...+++||+.+++ |+.
T Consensus 327 ---~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 327 ---EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp ---TSEEEEEETTTCCEEEEE
T ss_pred ---CCeEEEEECCCCcEEEEE
Confidence 1369999998876 543
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-06 Score=69.27 Aligned_cols=98 Identities=13% Similarity=0.261 Sum_probs=74.6
Q ss_pred cEEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
=|+|.|+|+.|...+..|+... .+|.+||.+...-.. ......++-+ +
T Consensus 7 ~v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~------------------------------~~d~~~~~fi-D 55 (107)
T 3drz_A 7 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDS------------------------------DKDETGAYLI-D 55 (107)
T ss_dssp EEEEEETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGG------------------------------GBCTTSCEEE-C
T ss_pred EEEEEECCEEEEECHHHHhcCCCcchhHHHhcCCCCCc------------------------------CCCCCceEEe-c
Confidence 4688899999999999998764 478899876421000 0001222322 6
Q ss_pred CCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhHHHHHHHHhhh
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKVADACADFLKK 204 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l~~~c~~~l~~ 204 (748)
-++..|+.+|+|+.+|++.++.+ ....+++-|++|++++|++.|.+-+.+
T Consensus 56 Rdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 56 RDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp SCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 79999999999999999987665 467899999999999999999987754
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0026 Score=66.96 Aligned_cols=253 Identities=15% Similarity=0.160 Sum_probs=143.3
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCc--eeecccccccceEEecccccccCCCccceEEEEeCCCCc--eEEccCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGR--WQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEAM 495 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~~ 495 (748)
.++.||+.... ..+.++|+.+++ |...............++.++.. .....++.+|+.+++ |..-...
T Consensus 102 ~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~-~~~g~l~~~d~~tG~~~W~~~~~~ 173 (376)
T 3q7m_A 102 SGGHVYIGSEK-------AQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIH-TSNGQLQALNEADGAVKWTVNLDM 173 (376)
T ss_dssp ETTEEEEEETT-------SEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEE-CTTSEEEEEETTTCCEEEEEECCC
T ss_pred eCCEEEEEcCC-------CEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEE-cCCCeEEEEECCCCcEEEEEeCCC
Confidence 46677764321 368999988765 65543322222222223333332 223479999998876 8664432
Q ss_pred Cc--ccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCc--------ceeEEEEECCEEEEEeC
Q psy10286 496 SM--LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKR--------SAVGAAALNDKLYVCGG 563 (748)
Q Consensus 496 ~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG 563 (748)
+. .+...+.++.++.+|+ |.. ...+..||+.+.+ |+.....+... .....+..++.+|+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~-g~~-----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~ 247 (376)
T 3q7m_A 174 PSLSLRGESAPTTAFGAAVV-GGD-----NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY 247 (376)
T ss_dssp -----CCCCCCEEETTEEEE-CCT-----TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT
T ss_pred CceeecCCCCcEEECCEEEE-EcC-----CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec
Confidence 21 1222334555888777 322 2368999998764 77643322211 11233455888887642
Q ss_pred CCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCC
Q psy10286 564 YDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTK 639 (748)
Q Consensus 564 ~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~ 639 (748)
-..+.++|+.+++ |+.-.. .....+..++.+|+.... ..++++|+.+.+ |+.-. . ..
T Consensus 248 ------~g~l~~~d~~tG~~~w~~~~~-----~~~~~~~~~~~l~~~~~~------g~l~~~d~~tG~~~w~~~~-~-~~ 308 (376)
T 3q7m_A 248 ------NGNLTALDLRSGQIMWKRELG-----SVNDFIVDGNRIYLVDQN------DRVMALTIDGGVTLWTQSD-L-LH 308 (376)
T ss_dssp ------TSCEEEEETTTCCEEEEECCC-----CEEEEEEETTEEEEEETT------CCEEEEETTTCCEEEEECT-T-TT
T ss_pred ------CcEEEEEECCCCcEEeeccCC-----CCCCceEECCEEEEEcCC------CeEEEEECCCCcEEEeecc-c-CC
Confidence 1368899998764 765421 123456678999987642 369999998775 76531 1 22
Q ss_pred CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEE
Q psy10286 640 RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~y 717 (748)
+...+.+..++.||+... ...++++|+.+.+ |+.- ++........+..+++||+... + ..++.|
T Consensus 309 ~~~~~~~~~~~~l~v~~~------~g~l~~~d~~tG~~~~~~~--~~~~~~~~~~~~~~~~l~v~~~-~-----G~l~~~ 374 (376)
T 3q7m_A 309 RLLTSPVLYNGNLVVGDS------EGYLHWINVEDGRFVAQQK--VDSSGFQTEPVAADGKLLIQAK-D-----GTVYSI 374 (376)
T ss_dssp SCCCCCEEETTEEEEECT------TSEEEEEETTTCCEEEEEE--CCTTCBCSCCEEETTEEEEEBT-T-----SCEEEE
T ss_pred CcccCCEEECCEEEEEeC------CCeEEEEECCCCcEEEEEe--cCCCcceeCCEEECCEEEEEeC-C-----CEEEEE
Confidence 333445567888887643 2479999998876 5542 2112223334556899888642 1 247777
Q ss_pred eC
Q psy10286 718 DP 719 (748)
Q Consensus 718 d~ 719 (748)
|+
T Consensus 375 ~~ 376 (376)
T 3q7m_A 375 TR 376 (376)
T ss_dssp EC
T ss_pred eC
Confidence 63
|
| >3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.2e-07 Score=77.30 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=42.6
Q ss_pred hHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 221 ~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
..++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.+
T Consensus 70 ~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 70 EIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp HHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 46677999999999999999999999999999999999999999874
|
| >2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-07 Score=80.82 Aligned_cols=47 Identities=34% Similarity=0.694 Sum_probs=43.2
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~ 266 (748)
...++.+++|+|+|.+.+..+++.+++.+|++|+++.|++.|++||.
T Consensus 74 ~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L~ 120 (120)
T 2if5_A 74 AEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLD 120 (120)
T ss_dssp HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 35667799999999999999999999999999999999999999973
|
| >1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=4e-06 Score=69.17 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=65.5
Q ss_pred cEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 76 DVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 76 Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
-|+|.. +|++|.++|.+ |..|.+++.||..+. +.....|.+ ++
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~-e~~~~~Ipl----------------------------------p~ 48 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPF-RESKGRIEL----------------------------------KQ 48 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSST-TTCTTEEEE----------------------------------TT
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhccc-ccCCCceec----------------------------------CC
Confidence 367776 89999999997 789999999998744 333344555 99
Q ss_pred CCHHHHHHHHHhhhcee--------------EEeechhHHHHHHHHHHhcc
Q psy10286 155 IDAVAMEALINFVYSGR--------------VTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~--------------~~i~~~~v~~ll~~A~~l~i 191 (748)
|+..+++.+++|+|.-. ..++.+.+.+|+.||++|++
T Consensus 49 V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 49 FDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 99999999999999744 35778889999999999985
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00028 Score=74.63 Aligned_cols=264 Identities=20% Similarity=0.208 Sum_probs=141.2
Q ss_pred EEEEEcCccCCCCCCcceEeecCCCCceeeccc-c-cccceEEeccc-ccccCCCccceEEEEeCCCCceEEccCCCccc
Q psy10286 423 HIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-E-TLSNAVISTKS-CLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLR 499 (748)
Q Consensus 423 ~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~-~-~~~~~~~~~~~-~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r 499 (748)
.+|+.|+.+ ..+..||..+++-...-. . ......+..++ .++..+..-..+..+|..+++....-....
T Consensus 3 ~l~vs~~~d------~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-- 74 (391)
T 1l0q_A 3 FAYIANSES------DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-- 74 (391)
T ss_dssp EEEEEETTT------TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--
T ss_pred EEEEEcCCC------CEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--
Confidence 567776642 358888887776543211 1 11122233333 233443344679999998887644332222
Q ss_pred ceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEE
Q psy10286 500 SRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVEC 575 (748)
Q Consensus 500 ~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~ 575 (748)
.-.+++.. ++.||+.|..+ ..+.+||+.+++....-... ....+++.. ++ .+|+.++.+ ..+..
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-----~~v~~ 142 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-----KTVSV 142 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-----TEEEE
T ss_pred CccceEECCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCC-----CEEEE
Confidence 22233333 44577765432 47999999988754432222 222334433 34 577777643 47999
Q ss_pred EeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC-E
Q psy10286 576 YEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN-K 651 (748)
Q Consensus 576 yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~ 651 (748)
||+.+.+....-... ..-..++.. +..+|+.++.+ ..+..||+.+.+....-.. .....+++.. ++ .
T Consensus 143 ~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 143 INTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTK 213 (391)
T ss_dssp EETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSE
T ss_pred EECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEec--CCCccceEECCCCCE
Confidence 999888765443222 111233333 44677776653 4699999988765443221 1111222222 34 4
Q ss_pred EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 652 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
+|+.+. +. ....+.+||+.+.+-... ++....-.++... +..||+.++.+ ..+.+||..+++-.
T Consensus 214 l~~~~~-~~--~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~s~~~d-----~~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 214 AYVTNV-DK--YFNTVSMIDTGTNKITAR--IPVGPDPAGIAVTPDGKKVYVALSFX-----NTVSVIDTATNTIT 279 (391)
T ss_dssp EEEEEE-CS--SCCEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred EEEEec-Cc--CCCcEEEEECCCCeEEEE--EecCCCccEEEEccCCCEEEEEcCCC-----CEEEEEECCCCcEE
Confidence 555442 11 136899999987754332 2222222233333 34677776543 46899999876543
|
| >2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B | Back alignment and structure |
|---|
Probab=98.08 E-value=3.2e-06 Score=69.36 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=62.3
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhccc--ccccccceeeeecchheehhhccccccccccccccccccceeeeec
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSD--MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQ 153 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 153 (748)
|+|+. +|++|.++|.+ |..|.+++.||... +.|.... .|.++
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~----------------------------------~Ipl~ 47 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETN----------------------------------EVNFR 47 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------C----------------------------------EEECS
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCC----------------------------------ceeCC
Confidence 56665 89999999997 78999999999752 2233333 34459
Q ss_pred CCCHHHHHHHHHhhhcee-----------EEeechhHHHHHHHHHHhcc
Q psy10286 154 GIDAVAMEALINFVYSGR-----------VTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 154 ~~~~~~~~~~l~flYtg~-----------~~i~~~~v~~ll~~A~~l~i 191 (748)
+|+..+++.+++|+|.-. ..++.+.+.+|+.||++|++
T Consensus 48 ~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 48 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 999999999999998754 35788899999999999985
|
| >1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-07 Score=79.59 Aligned_cols=49 Identities=31% Similarity=0.683 Sum_probs=45.0
Q ss_pred hhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
+...++.+++|+|+|.+.+..+++.+|+.+|++|+++.|++.|++||.+
T Consensus 77 ~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 125 (127)
T 1r29_A 77 NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125 (127)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3456777999999999999999999999999999999999999999974
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0004 Score=67.89 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=124.6
Q ss_pred eEEccCCCcccce--eEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCC
Q psy10286 489 WQMAEAMSMLRSR--VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDG 566 (748)
Q Consensus 489 W~~~~~~~~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~ 566 (748)
++.+...|..+.. .++...++.+|+..|..+ .+.+.++|+.+++=...-+++..-.+.+++..+++||+....
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g---~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-- 105 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNG---RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-- 105 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEETTEEEEEEEETT---EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS--
T ss_pred eEEEEEecCCCCcccceEEEECCEEEEECCCCC---CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee--
Confidence 3344444443333 555666899999998654 247899999999866555666555667788889999999653
Q ss_pred CCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC---CCCCcc-
Q psy10286 567 VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM---LTKRCR- 642 (748)
Q Consensus 567 ~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~- 642 (748)
-+.+++||+.+.+-.. .++.+-.+.+++.-++.+|+.-| .+.++.+||++.+-..--+. +.+...
T Consensus 106 ---~~~v~v~D~~t~~~~~--ti~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 106 ---NGLGFVWNIRNLRQVR--SFNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp ---SSEEEEEETTTCCEEE--EEECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred ---CCEEEEEECccCcEEE--EEECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 3689999998876432 23333455677766778888765 25799999998764332111 111111
Q ss_pred eeEEEECCEEEEEeccCCCccccEEEEEeCCCCc---EEEccCCCC------CC--cceEEEEE--CCEEEEEeC
Q psy10286 643 LGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE---WKMIASMNV------MR--SRVALVAN--MGKLWAIGG 704 (748)
Q Consensus 643 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~------~r--~~~~~~~~--~~~l~v~GG 704 (748)
-.+...+++||+-- + ..+.|.+.|+++.+ |..++.+.. +. .-.+.+.. ++++||.|-
T Consensus 175 NELe~~~G~lyan~-w----~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 175 NELEWVDGEIFANV-W----QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEEETTEEEEEE-T----TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ceeEEECCEEEEEE-c----cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 12445589988643 2 24789999999986 444443321 11 12344444 588999985
|
| >2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.2e-07 Score=82.46 Aligned_cols=47 Identities=21% Similarity=0.611 Sum_probs=43.2
Q ss_pred hhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHH
Q psy10286 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l 265 (748)
+...++.+++|+|+|.+.+..+|+.+|+.+|++|+++.|++.|++||
T Consensus 97 ~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 97 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 34567779999999999999999999999999999999999999886
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00098 Score=64.58 Aligned_cols=157 Identities=16% Similarity=0.081 Sum_probs=111.7
Q ss_pred ceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECC
Q psy10286 547 SAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 547 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
+-++....++.+|+..|..+. +.+..+|+.+++=...-+++...++.+++..+++||+.... .+.+++||+.
T Consensus 22 ftqGL~~~~~~LyestG~~g~---S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~-----~~~v~v~D~~ 93 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGR---SSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWR-----NHEGFVYDLA 93 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTS---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETT
T ss_pred ccccEEEECCEEEEECCCCCC---ceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEee-----CCEEEEEECC
Confidence 334777789999999986543 57889999999877766777777778889999999999765 4589999998
Q ss_pred CCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE-c--cCCCCCCcc-eEEEEECCEEEEE
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-I--ASMNVMRSR-VALVANMGKLWAI 702 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~--~~~p~~r~~-~~~~~~~~~l~v~ 702 (748)
+.+-. ...+.+..+.+++.-++++|+.-| .+.++.+|+++.+-.. + +.-+.+... --+...+++||+-
T Consensus 94 tl~~~--~ti~~~~~Gwglt~dg~~L~vSdg------s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyan 165 (243)
T 3mbr_X 94 TLTPR--ARFRYPGEGWALTSDDSHLYMSDG------TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLAN 165 (243)
T ss_dssp TTEEE--EEEECSSCCCEEEECSSCEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred cCcEE--EEEeCCCCceEEeeCCCEEEEECC------CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEE
Confidence 86543 334444566777766788888866 3689999999976432 2 222222111 2344568998854
Q ss_pred eCCCCCCCCCeEEEEeCCCCce
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (748)
-- ..++|.+.||++++=
T Consensus 166 vw-----~s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 166 VW-----LTSRIARIDPASGKV 182 (243)
T ss_dssp ET-----TTTEEEEECTTTCBE
T ss_pred EC-----CCCeEEEEECCCCCE
Confidence 31 235899999999753
|
| >3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=73.47 Aligned_cols=99 Identities=10% Similarity=0.287 Sum_probs=73.8
Q ss_pred cEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 76 DVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 76 Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
-|+|+. +|+.|.+++.+ |..|..++.|+...-.+.. .+.....|.+++
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~------------------------------~~~~~~~Iplpn 56 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDD------------------------------EDDDEIVMPVPN 56 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------------------------------------CEEECTT
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccc------------------------------cccCCCceeeCC
Confidence 566765 78999999998 6789999999975321100 001113455599
Q ss_pred CCHHHHHHHHHhhhcee-------------------------EEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 155 IDAVAMEALINFVYSGR-------------------------VTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~-------------------------~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|+..+++.+++|++.-. +.++.+.+.+|+.||++|+|+.|.+.|+..+...
T Consensus 57 V~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ 132 (169)
T 3v7d_A 57 VRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEM 132 (169)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 99999999999998632 2356678999999999999999999999998664
|
| >2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-06 Score=75.84 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=43.8
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~ 266 (748)
...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.
T Consensus 69 ~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 69 ADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 35677799999999999999999999999999999999999999985
|
| >2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.2e-07 Score=77.58 Aligned_cols=47 Identities=30% Similarity=0.700 Sum_probs=42.3
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~ 266 (748)
...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.
T Consensus 77 ~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 77 VKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 34566799999999999999999999999999999999999998874
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.014 Score=58.51 Aligned_cols=262 Identities=8% Similarity=-0.001 Sum_probs=138.8
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccc---ccccceEE-ecccccccCCCccceEEEEeCCCCceEEccCCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVI-STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS 496 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~---~~~~~~~~-~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~ 496 (748)
++.+|+.... -..+..||+. +.+..... ......++ ..++.++........+..||+. +++.... ++
T Consensus 25 ~g~l~v~~~~------~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~ 95 (299)
T 2z2n_A 25 KGKVWITQHK------ANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYT-LP 95 (299)
T ss_dssp TSCEEEEETT------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-CS
T ss_pred CCCEEEEecC------CCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEe-CC
Confidence 4567765321 1357888887 76665431 11122222 2344444443334568899986 5554443 22
Q ss_pred -cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceE
Q psy10286 497 -MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 497 -~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 573 (748)
....-++++.. ++.+|+.+.. ...+.+||+ +++..............+++.. +|++|+.... ...+
T Consensus 96 ~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i 164 (299)
T 2z2n_A 96 NPDSAPYGITEGPNGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-----NNAI 164 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEE
T ss_pred CcCCCceeeEECCCCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-----CCEE
Confidence 12223344444 5789987532 246899999 6665544321122223344443 6789986531 2578
Q ss_pred EEEeCCCCeEEEccCCCCCCc-ceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcc-eeEEEE-C
Q psy10286 574 ECYEPDKDQWRIVKSMQKHRS-AGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCR-LGVAAL-N 649 (748)
Q Consensus 574 ~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~ 649 (748)
++||+ +++..... .+.... -.+++.. ++.+|+.... .+.+.+||+ ++++.... .+..... .+++.- +
T Consensus 165 ~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~ 235 (299)
T 2z2n_A 165 GRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFK-IPTPNARPHAITAGAG 235 (299)
T ss_dssp EEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECST
T ss_pred EEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEE-CCCCCCCceeEEECCC
Confidence 99999 77766542 121111 1233333 5778887543 247999999 77776542 2212222 233332 5
Q ss_pred CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 650 NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 650 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+.+|+.... .+.+.+||+ +.+...+........-.+++.-+++||+... .+.+.+||+++++
T Consensus 236 g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~g~l~v~~~------~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 236 IDLWFTEWG-----ANKIGRLTS-NNIIEEYPIQIKSAEPHGICFDGETIWFAME------CDKIGKLTLIKDN 297 (299)
T ss_dssp TCEEEEETT-----TTEEEEEET-TTEEEEEECSSSSCCEEEEEECSSCEEEEET------TTEEEEEEEC---
T ss_pred CCEEEeccC-----CceEEEECC-CCceEEEeCCCCCCccceEEecCCCEEEEec------CCcEEEEEcCccc
Confidence 678887522 257899998 4555444211111122333335678888753 1468999987764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0057 Score=60.41 Aligned_cols=194 Identities=13% Similarity=0.125 Sum_probs=121.6
Q ss_pred eEEEEEC-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 502 VGVAVMK-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 502 ~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
++++..+ +.+|+..|..+ .+.+.++|+.+++=...-+++....+.+.+..++++|+..-. -+.+++||+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEEECCC
Confidence 5666665 89999877422 367999999999865544455545666778889999998653 36899999987
Q ss_pred CeEEEccCCCCC-CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-cc--CCCCCC-cceeEEEECCEEEEE
Q psy10286 581 DQWRIVKSMQKH-RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-VK--PMLTKR-CRLGVAALNNKIYVC 655 (748)
Q Consensus 581 ~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~--~~p~~r-~~~~~~~~~~~i~v~ 655 (748)
.+= +..++.+ ..+.+.+.-++++|+..| .+.+..+|+++.+-.. +. ..+.+. .-..+...++++|+-
T Consensus 96 ~~v--~~~i~~g~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 96 LSN--IKNFTHQMKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp TEE--EEEEECCSSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred CcE--EEEEECCCCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 653 2222222 334455555778998765 3689999999876432 22 111111 112344448888876
Q ss_pred eccCCCccccEEEEEeCCCCc---EEEccCCC-----C--C--CcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 656 GGYDGAIFLQSVEMYDPITDE---WKMIASMN-----V--M--RSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p-----~--~--r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
-.. .++|.+.|+.+.+ |..++.+. . + -.-.+++.. ++++||.|+.. +.+++.+..+
T Consensus 168 ~~~-----~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~-----~~v~~i~l~~ 237 (266)
T 2iwa_A 168 IWQ-----TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW-----PKLFEIKLHL 237 (266)
T ss_dssp ETT-----SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC-----SEEEEEEEEE
T ss_pred cCC-----CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC-----CeEEEEEEec
Confidence 432 4689999999875 44443210 0 0 112445544 57899999843 5677776544
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.028 Score=57.89 Aligned_cols=219 Identities=12% Similarity=0.074 Sum_probs=116.9
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC--------c
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK--------R 546 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~--------r 546 (748)
..++.+|+.+++....-+... .-++++.. ++.+|+.++.+ ..++.||+.+.+-...-+.+.. .
T Consensus 69 ~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 141 (353)
T 3vgz_A 69 GVVYRLDPVTLEVTQAIHNDL--KPFGATINNTTQTLWFGNTVN-----SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPL 141 (353)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSEEEETTTTEEEEEETTT-----TEEEEEETTTCCEEEEEESCCCCCCSSCCCC
T ss_pred ccEEEEcCCCCeEEEEEecCC--CcceEEECCCCCEEEEEecCC-----CEEEEEeCCCCeeEEEEecCCCccccccCCC
Confidence 467788887776433222111 11223333 34688876632 4799999988764332222111 1
Q ss_pred ceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEE
Q psy10286 547 SAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 547 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.-++++.. ++.+|+.+... -..++.||+.+.+-...-+... ..-+.++.. ++.+|+... ...+..
T Consensus 142 ~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~------~~~i~~ 210 (353)
T 3vgz_A 142 QPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNTG-KMSTGLALDSEGKRLYTTNA------DGELIT 210 (353)
T ss_dssp EEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCCC-TTCCCCEEETTTTEEEEECT------TSEEEE
T ss_pred CCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCCC-CccceEEECCCCCEEEEEcC------CCeEEE
Confidence 12334443 45688776311 2469999998876443322111 112223332 456776654 247889
Q ss_pred EECCCCcEEEccCCCC--CCcc-eeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--
Q psy10286 623 YDPKTDEWTSVKPMLT--KRCR-LGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-- 695 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~--~r~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 695 (748)
||+.+.+-...-..+. +... .+++.. ++.+|+.+.. .+.+++||+.+.+....-..+.+ ..++..
T Consensus 211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~d 282 (353)
T 3vgz_A 211 IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAAPES---LAVLFNPA 282 (353)
T ss_dssp EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEECSSC---CCEEEETT
T ss_pred EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEcCCC---ceEEECCC
Confidence 9998876443222211 1222 223333 4567776532 36899999988776543333333 122222
Q ss_pred CCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 696 MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 696 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
++.+|+.++.+ ..+.+||..+++...
T Consensus 283 g~~l~v~~~~~-----~~v~~~d~~~~~~~~ 308 (353)
T 3vgz_A 283 RNEAYVTHRQA-----GKVSVIDAKSYKVVK 308 (353)
T ss_dssp TTEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred CCEEEEEECCC-----CeEEEEECCCCeEEE
Confidence 45688876432 479999998876543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00099 Score=65.13 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=106.4
Q ss_pred eEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 549 VGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
.+....++.+|+..|..+. +.+..+|+.+++=...-+++..-++.+++..+++||+.... .+.+++||+++.
T Consensus 46 qGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~-----~~~v~v~D~~t~ 117 (262)
T 3nol_A 46 EGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWK-----NGLGFVWNIRNL 117 (262)
T ss_dssp EEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESS-----SSEEEEEETTTC
T ss_pred ceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEee-----CCEEEEEECccC
Confidence 5666668999999886542 47889999999866655666656667788899999999765 358999999887
Q ss_pred cEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE-ccC--CCCCCcce-EEEEECCEEEEEeC
Q psy10286 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-IAS--MNVMRSRV-ALVANMGKLWAIGG 704 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~--~p~~r~~~-~~~~~~~~l~v~GG 704 (748)
+-.. ..+.+..+.+.+.-++++|+.-| .+.++.+|+++.+-.. +.. -+.+.... -+...+|+||+--
T Consensus 118 ~~~~--ti~~~~eG~glt~dg~~L~~SdG------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~- 188 (262)
T 3nol_A 118 RQVR--SFNYDGEGWGLTHNDQYLIMSDG------TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANV- 188 (262)
T ss_dssp CEEE--EEECSSCCCCEEECSSCEEECCS------SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEEE--EEECCCCceEEecCCCEEEEECC------CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEE-
Confidence 6433 33334455666666777888765 3689999999876433 221 11111111 2344589998642
Q ss_pred CCCCCCCCeEEEEeCCCCceE
Q psy10286 705 YDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~ 725 (748)
+ ..++|.+.||++++=.
T Consensus 189 w----~~~~I~vIDp~tG~V~ 205 (262)
T 3nol_A 189 W----QTNKIVRIDPETGKVT 205 (262)
T ss_dssp T----TSSEEEEECTTTCBEE
T ss_pred c----cCCeEEEEECCCCcEE
Confidence 1 2358999999998643
|
| >3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A | Back alignment and structure |
|---|
Probab=97.72 E-value=9.1e-06 Score=82.15 Aligned_cols=89 Identities=26% Similarity=0.550 Sum_probs=69.1
Q ss_pred eehhhccccccccccccccccccceeeeecCCCHH-HHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHh
Q psy10286 124 VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV-AMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 202 (748)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l 202 (748)
+.++++.||||++||.+++.|+.+.+|.+++++.. .+
T Consensus 51 r~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v------------------------------------------ 88 (279)
T 3i3n_A 51 RSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGP------------------------------------------ 88 (279)
T ss_dssp HHHHHHHCTTSGGGCCC--------EEECCCCSSTTCS------------------------------------------
T ss_pred HHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCC------------------------------------------
Confidence 48899999999999999999999988888866421 11
Q ss_pred hhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCC
Q psy10286 203 KKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 270 (748)
Q Consensus 203 ~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~ 270 (748)
+...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.+.++
T Consensus 89 ----------------~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~ 140 (279)
T 3i3n_A 89 ----------------EPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH 140 (279)
T ss_dssp ----------------CHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ----------------CHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC
Confidence 2245667999999999999999999999999999999999999999987654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.048 Score=54.46 Aligned_cols=219 Identities=8% Similarity=0.018 Sum_probs=119.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..+..||+. +++...........-++++.. ++.+|+.... ...+.+||+. +++...........-++++..
T Consensus 36 ~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~ 108 (299)
T 2z2n_A 36 NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENA-----ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP 108 (299)
T ss_dssp TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEECT
T ss_pred CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCC-----CCeEEEECCC-CcEEEEeCCCcCCCceeeEECC
Confidence 568899988 777654321112222334432 6788887542 2368899986 455444311122233444444
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
++++|+.+.. -..+.+||+ +++............-.+++.. ++.+|+.... ...+++||+ +.+....
T Consensus 109 ~g~l~v~~~~-----~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~ 176 (299)
T 2z2n_A 109 NGDIWFTEMN-----GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ-----NNAIGRITE-SGDITEF 176 (299)
T ss_dssp TSCEEEEETT-----TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECT-TCCEEEE
T ss_pred CCCEEEEecC-----CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC-----CCEEEEEcC-CCcEEEe
Confidence 6789987542 247889999 6655544221111222333333 6788886532 247999999 7777654
Q ss_pred cCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc-eEEEEE-CCEEEEEeCCCCCCC
Q psy10286 634 KPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR-VALVAN-MGKLWAIGGYDGVSN 710 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~l~v~GG~~~~~~ 710 (748)
........-.+++.- ++.+|+.... .+.+.+||+ +.++..+. .+..... .+++.. ++++|+....
T Consensus 177 ~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~----- 244 (299)
T 2z2n_A 177 KIPTPASGPVGITKGNDDALWFVEII-----GNKIGRITT-SGEITEFK-IPTPNARPHAITAGAGIDLWFTEWG----- 244 (299)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEETT-----
T ss_pred eCCCCCCcceeEEECCCCCEEEEccC-----CceEEEECC-CCcEEEEE-CCCCCCCceeEEECCCCCEEEeccC-----
Confidence 211111112233333 5678887532 257899999 77776642 2212222 233332 5788887521
Q ss_pred CCeEEEEeCCCCceEec
Q psy10286 711 LPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 711 ~~~v~~yd~~~~~W~~~ 727 (748)
...+.+||+ +++...+
T Consensus 245 ~~~i~~~d~-~g~~~~~ 260 (299)
T 2z2n_A 245 ANKIGRLTS-NNIIEEY 260 (299)
T ss_dssp TTEEEEEET-TTEEEEE
T ss_pred CceEEEECC-CCceEEE
Confidence 246899998 4554443
|
| >3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2e-06 Score=75.20 Aligned_cols=46 Identities=30% Similarity=0.735 Sum_probs=41.2
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHH
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l 265 (748)
...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||
T Consensus 80 ~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 80 ARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 4566779999999999999999999999999999999998887653
|
| >2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A | Back alignment and structure |
|---|
Probab=97.67 E-value=3.6e-05 Score=66.47 Aligned_cols=49 Identities=27% Similarity=0.609 Sum_probs=45.9
Q ss_pred hhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy10286 218 FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~ 266 (748)
.+...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.
T Consensus 69 ~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 69 SNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999999999999999986
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0038 Score=60.99 Aligned_cols=179 Identities=12% Similarity=0.076 Sum_probs=115.7
Q ss_pred eEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 502 VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 502 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
.++...++.+|+..|..+ .+.++|+.+++=...- ++..-.+.+++..+++||+....+ +.+++||+.+.
T Consensus 58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~-----~~v~V~D~~Tl 126 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTE-----GLLFTWSGMPP 126 (268)
T ss_dssp EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS-----CEEEEEETTTT
T ss_pred ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC-----CEEEEEECCcC
Confidence 566667999999998653 3889999988643323 555455667888899999986533 68999999887
Q ss_pred eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc-c--CCCCCC-cceeEEEECCEEEEEec
Q psy10286 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-K--PMLTKR-CRLGVAALNNKIYVCGG 657 (748)
Q Consensus 582 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~--~~p~~r-~~~~~~~~~~~i~v~GG 657 (748)
+-.. ..+.+..+.+++.-++++|+.-|. +.++.+||++.+-..- . .-+.+. ..-.+...+|+||+--
T Consensus 127 ~~~~--ti~~~~eGwGLt~Dg~~L~vSdGs------~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv- 197 (268)
T 3nok_A 127 QRER--TTRYSGEGWGLCYWNGKLVRSDGG------TMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI- 197 (268)
T ss_dssp EEEE--EEECSSCCCCEEEETTEEEEECSS------SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEEE--EEeCCCceeEEecCCCEEEEECCC------CEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE-
Confidence 6432 223334566777778899998763 5899999999765432 1 111111 1122444588988543
Q ss_pred cCCCccccEEEEEeCCCCc---EEEccCCC-------CCC--cceEEEEE--CCEEEEEeC
Q psy10286 658 YDGAIFLQSVEMYDPITDE---WKMIASMN-------VMR--SRVALVAN--MGKLWAIGG 704 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~---W~~~~~~p-------~~r--~~~~~~~~--~~~l~v~GG 704 (748)
+ ..+.|.+.|+++.+ |..++.+. ... .--+++.. ++++||.|-
T Consensus 198 w----~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 198 W----HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp T----TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred C----CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 2 24689999999986 44444221 111 11233333 578999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0016 Score=68.79 Aligned_cols=216 Identities=17% Similarity=0.203 Sum_probs=118.2
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
-..+..+|..+++-...-... ..-.+++.. +..+|+.|+.+ ..+..||+.+++....-..+. .-.+++.
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d-----~~i~v~d~~~~~~~~~~~~~~--~v~~~~~ 81 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIATVPAGS--SPQGVAV 81 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEEEECSS--SEEEEEE
T ss_pred CCEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCC-----CeEEEEECCCCeEEEEEECCC--CccceEE
Confidence 357889999887654322211 112333333 34677877643 478999999887654333222 2233333
Q ss_pred E-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 554 L-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 554 ~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
. + ..+|+.|..+ ..+.+||+.+++....-... ..-.+++.. +..+|+.++.+ ..+..||+.+.+
T Consensus 82 spdg~~l~~~~~~~-----~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~ 149 (391)
T 1l0q_A 82 SPDGKQVYVTNMAS-----STLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTKA 149 (391)
T ss_dssp CTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTE
T ss_pred CCCCCEEEEEECCC-----CEEEEEECCCCeEEEEEeCC--CCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCc
Confidence 3 3 4576666532 57999999988754432221 122333333 34677777653 479999998887
Q ss_pred EEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CC-EEEEEeCC
Q psy10286 630 WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MG-KLWAIGGY 705 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~ 705 (748)
....-.. ......++.. ++.+|+.++.+ ..+.+||+.+.+....-.. ...-.+++.. ++ .+++.+.
T Consensus 150 ~~~~~~~--~~~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~- 219 (391)
T 1l0q_A 150 VINTVSV--GRSPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNV- 219 (391)
T ss_dssp EEEEEEC--CSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEE-
T ss_pred EEEEEec--CCCcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEec-
Confidence 6543222 1222233332 34677776543 4799999988765443221 1122222222 44 4555442
Q ss_pred CCCCCCCeEEEEeCCCCce
Q psy10286 706 DGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~W 724 (748)
+. ....+.+||+.+++-
T Consensus 220 ~~--~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 220 DK--YFNTVSMIDTGTNKI 236 (391)
T ss_dssp CS--SCCEEEEEETTTTEE
T ss_pred Cc--CCCcEEEEECCCCeE
Confidence 11 124789999887653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.04 Score=55.09 Aligned_cols=258 Identities=9% Similarity=0.040 Sum_probs=136.9
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc---cccceEE-ecccccccCCCccceEEEEeCCCCceEEccCCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE---TLSNAVI-STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS 496 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~---~~~~~~~-~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~ 496 (748)
++.+|+.... ...+.+||+. +++...... .....+. ..++.++........+..||+. +++.......
T Consensus 30 ~g~l~v~~~~------~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~ 101 (300)
T 2qc5_A 30 DGKVWFTQHK------ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQ 101 (300)
T ss_dssp TSCEEEEETT------TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSS
T ss_pred CCCEEEEcCC------CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCC
Confidence 4567776432 1357788887 666543211 1122222 2334444443334578999988 7765443211
Q ss_pred cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEE-CCEEEEEeCCCCCCCCceE
Q psy10286 497 MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAAL-NDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 497 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~ 573 (748)
....-++++.. ++.+|+.+.. ...+.+||+. .+..... ++ ....-.+++.. ++++|+.... ...+
T Consensus 102 ~~~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i 169 (300)
T 2qc5_A 102 PDSGPYGITEGLNGDIWFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-----NNSI 169 (300)
T ss_dssp TTCCEEEEEECSTTCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEE
T ss_pred CCCCCccceECCCCCEEEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-----CCeE
Confidence 12223344443 6788887532 2468899988 6555432 22 12223344443 6788886532 2478
Q ss_pred EEEeCCCCeEEEccCCCCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcc-eeEEEE-C
Q psy10286 574 ECYEPDKDQWRIVKSMQKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCR-LGVAAL-N 649 (748)
Q Consensus 574 ~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~ 649 (748)
++||+ ++++.... .+..... .+++.. ++.+|+.... ...+.+||+ +.++.... .+..... .+++.- +
T Consensus 170 ~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~ 240 (300)
T 2qc5_A 170 GRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYD-IPTPNARPHAITAGKN 240 (300)
T ss_dssp EEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECST
T ss_pred EEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEE-CCCCCCCceEEEECCC
Confidence 99998 66665542 2222122 233332 5788886543 246899998 66665542 1211222 233332 5
Q ss_pred CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 650 NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 650 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+.||+.... .+.+.+||+ +.+............-.+++.. +|+||+.+. . .+.+|||+
T Consensus 241 g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~-~i~~~~p~ 299 (300)
T 2qc5_A 241 SEIWFTEWG-----ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK------C-KIGKLNLN 299 (300)
T ss_dssp TCEEEEETT-----TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS------S-EEEEEEEC
T ss_pred CCEEEeccC-----CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc------C-ceEEeCCC
Confidence 678887632 257899998 4566554211111112333333 577777642 1 68888875
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.016 Score=61.81 Aligned_cols=266 Identities=13% Similarity=0.030 Sum_probs=137.0
Q ss_pred ceEeecCCCCceeecccccc----cceEEecccccccCCCccceEEEEeCCCCceEEccCCC---cccceeEEEEE--CC
Q psy10286 439 TVEVFDPLVGRWQMAEEETL----SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS---MLRSRVGVAVM--KN 509 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~--~~ 509 (748)
.++.+|+.++++..+..... ....+..++.+...+..-..+..+|..+++........ ........+.. ++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN 181 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence 67888887766554432111 12223334444444444456999999988876543332 11222222333 77
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK 587 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 587 (748)
.+|+.|+.+ ..+.+||+.+.+....-.. ....-.+++.. ++.+|+.|+.+ ..+..||+.+.+....-
T Consensus 182 ~~~~s~~~d-----~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~ 250 (433)
T 3bws_A 182 ELWVSQMQA-----NAVHVFDLKTLAYKATVDL-TGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKT 250 (433)
T ss_dssp EEEEEEGGG-----TEEEEEETTTCCEEEEEEC-SSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEEC
T ss_pred EEEEEECCC-----CEEEEEECCCceEEEEEcC-CCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEe
Confidence 888888743 4789999988654322111 11122233333 44677776543 47899999888764432
Q ss_pred CCCCCCcceEEEEE-CCEEEEEccCCCCc---ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCC
Q psy10286 588 SMQKHRSAGGVIAF-DSYVYALGGHDGLS---IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGA 661 (748)
Q Consensus 588 ~~~~~r~~~~~~~~-~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 661 (748)
+. ...-.+++.. ++..+++++..... .-..+..||+.+.+-......+. ...+++.. ++.+|+.++.+
T Consensus 251 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-- 324 (433)
T 3bws_A 251 DK--IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCC-- 324 (433)
T ss_dssp CC--CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTT--
T ss_pred cC--CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCC--
Confidence 22 2222233332 44344444432111 12478999998876443321111 11122222 34688887643
Q ss_pred ccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE-EEEEeCCCCC---------CCCCeEEEEeCCCCceEe
Q psy10286 662 IFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK-LWAIGGYDGV---------SNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~---------~~~~~v~~yd~~~~~W~~ 726 (748)
..+.+||..+.+-... ++....-.+++.. +++ +|+.+...+. .....+++||+.+++...
T Consensus 325 ---~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~ 395 (433)
T 3bws_A 325 ---SKIEVYDLKEKKVQKS--IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE 395 (433)
T ss_dssp ---TEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE
T ss_pred ---CEEEEEECCCCcEEEE--ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEE
Confidence 4789999987654332 2222222233333 454 5544432110 012379999998876543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0089 Score=63.89 Aligned_cols=271 Identities=12% Similarity=0.039 Sum_probs=137.0
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc--------cccceEEecccccccCCCccceEEEEeCCCCceEEc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE--------TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMA 492 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~ 492 (748)
++.+++.|+.+ ..+..||..+++....... .+....+..++.....+..-..+..||..+++....
T Consensus 133 ~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~ 206 (433)
T 3bws_A 133 NTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT 206 (433)
T ss_dssp SSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE
T ss_pred CCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE
Confidence 56778777642 2588999988776643221 111112233444444444446789999987664322
Q ss_pred cCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCC-
Q psy10286 493 EAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVS- 568 (748)
Q Consensus 493 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~- 568 (748)
-.. ....-.+++.. ++.+|+.|+.+ ..+.+||+.+.+....-+. ...-.+++.. +++.+++++.....
T Consensus 207 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 207 VDL-TGKWSKILLYDPIRDLVYCSNWIS-----EDISVIDRKTKLEIRKTDK--IGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp EEC-SSSSEEEEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEECCC--CSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred EcC-CCCCeeEEEEcCCCCEEEEEecCC-----CcEEEEECCCCcEEEEecC--CCCceEEEEcCCCCEEEEEECCCCcc
Confidence 111 11112233333 45677776533 3799999998876443222 2222333333 55444444432211
Q ss_pred --CCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCccee
Q psy10286 569 --SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLG 644 (748)
Q Consensus 569 --~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 644 (748)
.-..+..||+.+.+-......+. .-..++.. ++.+|+.++.+ ..+..||+.+.+-... ++....-.+
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-----~~v~v~d~~~~~~~~~--~~~~~~~~~ 349 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGPPG--NKRHIVSGNTENKIYVSDMCC-----SKIEVYDLKEKKVQKS--IPVFDKPNT 349 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEEEE--CEEEEEECSSTTEEEEEETTT-----TEEEEEETTTTEEEEE--EECSSSEEE
T ss_pred ccCCCeEEEEECCCCcEEeeccCCC--CcceEEECCCCCEEEEEecCC-----CEEEEEECCCCcEEEE--ecCCCCCCe
Confidence 13578899998876433321111 11122222 34788887653 4799999987654332 222222223
Q ss_pred EEEE-CCEEEEEeccCCCc----------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCC
Q psy10286 645 VAAL-NNKIYVCGGYDGAI----------FLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLP 712 (748)
Q Consensus 645 ~~~~-~~~i~v~GG~~~~~----------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~ 712 (748)
++.. +++.+++++..... .-..+++||..+.+....-.. ...-.+++.. +++.+++++.. ..
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~----d~ 423 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFL----DH 423 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETT----TT
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECC----CC
Confidence 3333 45444444332211 124899999988765443211 1111222222 55555554421 13
Q ss_pred eEEEEeCC
Q psy10286 713 TVEVYDPS 720 (748)
Q Consensus 713 ~v~~yd~~ 720 (748)
.+.+|+.+
T Consensus 424 ~i~v~~~~ 431 (433)
T 3bws_A 424 QIRVYRRD 431 (433)
T ss_dssp EEEEEEET
T ss_pred eEEEEEec
Confidence 68888765
|
| >3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=1.8e-05 Score=73.48 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=43.1
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~ 266 (748)
...|+.+++|+|++.+.+..+++.+++.+|++|+++.|++.|+++|.
T Consensus 83 ~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~ 129 (172)
T 3htm_A 83 PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALC 129 (172)
T ss_dssp HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34567799999999999999999999999999999999999999985
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.029 Score=57.39 Aligned_cols=242 Identities=10% Similarity=0.044 Sum_probs=120.1
Q ss_pred ceEEEEeCC--CCceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCC-eEEEccCCCCCcceeEE
Q psy10286 477 STVEVFDPL--VGRWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRR-VWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~--~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~r~~~~~ 551 (748)
..+..|+.. ++++..+..++....-..++.. ++ .+|+.+.. ...+..||.... ....+...+....-+++
T Consensus 60 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 134 (343)
T 1ri6_A 60 FRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN-----AGNVSVTRLEDGLPVGVVDVVEGLDGCHSA 134 (343)
T ss_dssp TEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETT-----TTEEEEEEEETTEEEEEEEEECCCTTBCCC
T ss_pred CeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecC-----CCeEEEEECCCCccccccccccCCCCceEE
Confidence 566676665 7787766544322222333333 34 46665532 235777877322 22222222222222333
Q ss_pred EEE-CC-EEEEEeCCCCCCCCceEEEEeCCC-CeEEEcc----CCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEE
Q psy10286 552 AAL-ND-KLYVCGGYDGVSSLNTVECYEPDK-DQWRIVK----SMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 552 ~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~----~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~ 622 (748)
+.. ++ .+|+.+..+ ..+..||..+ .+..... ..+....-..++.. ++ .+|+.+.. .+.+..
T Consensus 135 ~~s~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----~~~i~~ 204 (343)
T 1ri6_A 135 NISPDNRTLWVPALKQ-----DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----NSSVDV 204 (343)
T ss_dssp EECTTSSEEEEEEGGG-----TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----TTEEEE
T ss_pred EECCCCCEEEEecCCC-----CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----CCEEEE
Confidence 333 34 677765322 4688899887 6665432 11111111122222 34 57777644 246888
Q ss_pred EECC--CCcEEE---ccCCCCC---CcceeEEEE--C-CEEEEEeccCCCccccEEEEEeCC--CCcEEEccCCCCCCcc
Q psy10286 623 YDPK--TDEWTS---VKPMLTK---RCRLGVAAL--N-NKIYVCGGYDGAIFLQSVEMYDPI--TDEWKMIASMNVMRSR 689 (748)
Q Consensus 623 yd~~--~~~W~~---~~~~p~~---r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r~~ 689 (748)
||.. +.++.. +...+.. ......+.+ + ..+|+.++. .+.+.+||.. +.+++.+...+....-
T Consensus 205 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 279 (343)
T 1ri6_A 205 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT-----ASLITVFSVSEDGSVLSKEGFQPTETQP 279 (343)
T ss_dssp EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT-----TTEEEEEEECTTSCCEEEEEEEECSSSC
T ss_pred EEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC-----CCEEEEEEEcCCCCceEEeeeecCCCcc
Confidence 8874 444432 2223322 112222333 3 367666532 2468888877 5567766544433222
Q ss_pred eEEEEE-CC-EEEEEeCCCCCCCCCeEEE--EeCCCCceEecCCCCCCCcceEEEEee
Q psy10286 690 VALVAN-MG-KLWAIGGYDGVSNLPTVEV--YDPSTDSWAFVAPMCAHEGGVGVGVIP 743 (748)
Q Consensus 690 ~~~~~~-~~-~l~v~GG~~~~~~~~~v~~--yd~~~~~W~~~~~~~~~r~~~~~~~~~ 743 (748)
..++.. ++ .||+.++.+ ..+.+ +|+++++++.+..++....-.++++.+
T Consensus 280 ~~~~~s~dg~~l~~~~~~~-----~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~ 332 (343)
T 1ri6_A 280 RGFNVDHSGKYLIAAGQKS-----HHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNA 332 (343)
T ss_dssp CCEEECTTSSEEEEECTTT-----CEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred ceEEECCCCCEEEEecCCC-----CeEEEEEEcCCCceeeEccccccCCCCeeEEEEc
Confidence 223332 44 455554322 24445 488899998887776654444555543
|
| >1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A | Back alignment and structure |
|---|
Probab=97.60 E-value=5.3e-05 Score=65.60 Aligned_cols=72 Identities=15% Similarity=0.438 Sum_probs=55.8
Q ss_pred HHHHHHHhhhcccCC-cccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 195 ADACADFLKKRFHPN-NVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 195 ~~~c~~~l~~~l~~~-ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
...++.|+...+... +.+.+ .-.+...++.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|+++|.+
T Consensus 47 Laa~S~yF~~~f~~~~~~i~l-~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 47 LACTSKMFEILFHRNSQHYTL-DFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHCHHHHHHTTSCCSEEEE-CSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHcCCCcEEEe-CCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 344555665544332 22222 2245678899999999999999999999999999999999999999999975
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.014 Score=60.17 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=136.3
Q ss_pred EEcCccCCCCCCcceEeecCCCCceeeccc---cc-ccceEEecccccccCCC--ccceEEEEeCCCCceEEccCCCc-c
Q psy10286 426 AVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ET-LSNAVISTKSCLTKAGD--SLSTVEVFDPLVGRWQMAEAMSM-L 498 (748)
Q Consensus 426 v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~---~~-~~~~~~~~~~~~~~~g~--~~~~~~~yd~~~~~W~~~~~~~~-~ 498 (748)
.+|.+......--.++.+|+.++++..+.. .. .....+..++.++..+. ....++.||..+++++.+..... .
T Consensus 6 ~vg~y~~~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~ 85 (347)
T 3hfq_A 6 LFGTYTKKTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG 85 (347)
T ss_dssp EEEECCSSSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEES
T ss_pred EEEeccCCCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCC
Confidence 345443333333467888888888866432 11 11223344444444332 13578999998888776654321 1
Q ss_pred cceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECC-CCeEEEccCC------CCCc----ceeEEEEE-CCEEEEEeCC
Q psy10286 499 RSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPV-RRVWNKVSPM------CFKR----SAVGAAAL-NDKLYVCGGY 564 (748)
Q Consensus 499 r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~------~~~r----~~~~~~~~-~~~iyv~GG~ 564 (748)
..-..++.. ++ .+|+.+.. ...+..||.. +.+...+... |.+| ..++++.. +|++|+.+..
T Consensus 86 ~~p~~~a~spdg~~l~~~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~ 160 (347)
T 3hfq_A 86 TPPAYVAVDEARQLVYSANYH-----KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG 160 (347)
T ss_dssp CCCSEEEEETTTTEEEEEETT-----TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT
T ss_pred CCCEEEEECCCCCEEEEEeCC-----CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC
Confidence 122233333 44 57766532 2357777764 3333332211 1111 12333333 6777776542
Q ss_pred CCCCCCceEEEEeCC-CCeEEEccC--CCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECCCCcEEEcc---CC
Q psy10286 565 DGVSSLNTVECYEPD-KDQWRIVKS--MQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVK---PM 636 (748)
Q Consensus 565 ~~~~~~~~~~~yd~~-~~~W~~~~~--~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~ 636 (748)
+ +.+..||.. +++...... .+....-..++.. ++ .+|+.+..++ .-.++.++..+.+++.+. ..
T Consensus 161 ~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~---~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 161 S-----DKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSS---QIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp T-----TEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTT---EEEEEEEETTTTEEEEEEEEESS
T ss_pred C-----CEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCceEEeeeeeec
Confidence 2 478888887 555554432 1111111122222 45 5787654422 113444455467765543 22
Q ss_pred CCC---CcceeEEEE--CC-EEEEEeccCCCccccEEEEEeCCC-CcEEEccCCCCC-CcceEEEEE-CC-EEEEEeCCC
Q psy10286 637 LTK---RCRLGVAAL--NN-KIYVCGGYDGAIFLQSVEMYDPIT-DEWKMIASMNVM-RSRVALVAN-MG-KLWAIGGYD 706 (748)
Q Consensus 637 p~~---r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~-r~~~~~~~~-~~-~l~v~GG~~ 706 (748)
+.. ......+.+ ++ .||+.+.. .+.+.+||... .+++.+...+.. ..-..++.. ++ .||+.+..+
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEET-----TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCC-----CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 221 112222333 44 57776542 25788888753 356655444431 112233332 45 466654422
Q ss_pred CCCCCCeEEEE--eCCCCceEecCC
Q psy10286 707 GVSNLPTVEVY--DPSTDSWAFVAP 729 (748)
Q Consensus 707 ~~~~~~~v~~y--d~~~~~W~~~~~ 729 (748)
..+.+| |+++++.+.+..
T Consensus 308 -----~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 308 -----DNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp -----TEEEEEEECTTTCCEEEEEE
T ss_pred -----CcEEEEEEeCCCCeEEeccc
Confidence 245666 888888776543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0086 Score=62.28 Aligned_cols=228 Identities=13% Similarity=0.111 Sum_probs=118.9
Q ss_pred cceEEEEeCCCCceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-CcceeEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-KRSAVGAA 552 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~ 552 (748)
-..+..||..+++|..+..+...... .+++.. ++..++.|+.+ ..+..||..++++.....+.. ...-.+++
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILRINRAARCVR 103 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCCCSSCEEEEE
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC-----CeEEEEECCCCeeeeeEEeecCCCceeEEE
Confidence 45788999988877665554422222 233333 56677777754 358888988888765543222 22222333
Q ss_pred EE-CCEEEEEeCCCCCCCCceEEEEeCCCCe-EEEccCCCCC--CcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 553 AL-NDKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVKSMQKH--RSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
.. +++.++.|+.+ ..+..||..+.. |........+ ..-.+++.. ++..++.|+.++ .+..||...
T Consensus 104 ~~~~~~~l~~~~~d-----~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~ 173 (372)
T 1k8k_C 104 WAPNEKKFAVGSGS-----RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSAYI 173 (372)
T ss_dssp ECTTSSEEEEEETT-----SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEECCC
T ss_pred ECCCCCEEEEEeCC-----CEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC-----CEEEEEccc
Confidence 32 66777777754 345566655443 3332222111 111222222 566777777643 578888542
Q ss_pred C----------------cEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc
Q psy10286 628 D----------------EWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR 689 (748)
Q Consensus 628 ~----------------~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (748)
. .-..+..+.........+.+ ++..++.|+.+ ..+.+||..+.+-... +......
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~ 246 (372)
T 1k8k_C 174 KEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAVAT--LASETLP 246 (372)
T ss_dssp TTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEEEE--EECSSCC
T ss_pred ccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCceeEE--EccCCCC
Confidence 1 11111112111122223333 56677777654 4688999876653322 1111111
Q ss_pred -eEEE-EECCEEEEEeCCCCCCCCCeEEEEeCCC--CceEecCCCC
Q psy10286 690 -VALV-ANMGKLWAIGGYDGVSNLPTVEVYDPST--DSWAFVAPMC 731 (748)
Q Consensus 690 -~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~ 731 (748)
.++. .-++++++.| .+ ..+.+||..+ ++|..+..+.
T Consensus 247 v~~~~~~~~~~~l~~~-~d-----~~i~i~~~~~~~~~~~~~~~~~ 286 (372)
T 1k8k_C 247 LLAVTFITESSLVAAG-HD-----CFPVLFTYDSAAGKLSFGGRLD 286 (372)
T ss_dssp EEEEEEEETTEEEEEE-TT-----SSCEEEEEETTTTEEEECCCCC
T ss_pred eEEEEEecCCCEEEEE-eC-----CeEEEEEccCcCceEEEeeccC
Confidence 2222 2367766665 33 2467888777 8898775553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.07 Score=53.24 Aligned_cols=218 Identities=9% Similarity=0.047 Sum_probs=119.1
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
...+..||+. ++............-++++.. ++.+|+.... ...+.+||+. +++...........-++++..
T Consensus 40 ~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-----~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~ 112 (300)
T 2qc5_A 40 ANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENG-----ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEG 112 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred CCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecC-----CCeEEEECCC-CCeEEecCCCCCCCCccceEC
Confidence 3568889988 666654321111222334433 5788886532 2468999998 666544321122233444443
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC-CcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-RSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
++++|+.+.. -..+.+||+. ++..... ++.. ..-.+++. -++.+|+.... ...+++||+ +.++.
T Consensus 113 ~~g~l~v~~~~-----~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~ 179 (300)
T 2qc5_A 113 LNGDIWFTQLN-----GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTENQ-----NNSIGRITN-TGKLE 179 (300)
T ss_dssp STTCEEEEETT-----TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEE
T ss_pred CCCCEEEEccC-----CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEecC-----CCeEEEECC-CCcEE
Confidence 6789987542 2478899988 6555432 2211 12223333 25678886532 246999998 66666
Q ss_pred EccCCCCCCcc-eeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc-eEEEEE-CCEEEEEeCCCC
Q psy10286 632 SVKPMLTKRCR-LGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR-VALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 632 ~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~l~v~GG~~~ 707 (748)
... .+..... .+++.- ++.+|+.... .+.+.+||+ +.++..... +..... .+++.- +++||+....
T Consensus 180 ~~~-~~~~~~~~~~i~~d~~g~l~v~~~~-----~~~i~~~~~-~g~~~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~-- 249 (300)
T 2qc5_A 180 EYP-LPTNAAAPVGITSGNDGALWFVEIM-----GNKIGRITT-TGEISEYDI-PTPNARPHAITAGKNSEIWFTEWG-- 249 (300)
T ss_dssp EEE-CSSTTCCEEEEEECTTSSEEEEETT-----TTEEEEECT-TCCEEEEEC-SSTTCCEEEEEECSTTCEEEEETT--
T ss_pred Eee-CCCCCCCcceEEECCCCCEEEEccC-----CCEEEEEcC-CCcEEEEEC-CCCCCCceEEEECCCCCEEEeccC--
Confidence 543 2222122 233332 5778887532 247899998 566665422 212222 233332 5788887532
Q ss_pred CCCCCeEEEEeCCCCceEec
Q psy10286 708 VSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~ 727 (748)
.+.+.+||+ +++....
T Consensus 250 ---~~~i~~~~~-~g~~~~~ 265 (300)
T 2qc5_A 250 ---ANQIGRITN-DNTIQEY 265 (300)
T ss_dssp ---TTEEEEECT-TSCEEEE
T ss_pred ---CCeEEEECC-CCcEEEE
Confidence 246889998 4555543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.004 Score=64.99 Aligned_cols=231 Identities=11% Similarity=0.142 Sum_probs=123.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--C--CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--K--NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+..||...+++..+..+............ + +.+++.|+.+ ..+..||..+++|..+..+........++
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 107 (379)
T 3jrp_A 33 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSV 107 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCceeEeeeecCCCcceEEE
Confidence 4577777776666655444322222223333 2 6777777754 35888999999887765544322233333
Q ss_pred EE--C--CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcceEEEEE--------------CCEEEEEccCCC
Q psy10286 553 AL--N--DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAF--------------DSYVYALGGHDG 613 (748)
Q Consensus 553 ~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--------------~~~iyv~GG~~~ 613 (748)
.+ + +..++.|+.+ ..+..||..+........+. ....-.+++.. ++..++.|+.++
T Consensus 108 ~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 182 (379)
T 3jrp_A 108 QWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 182 (379)
T ss_dssp EECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTS
T ss_pred EeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCC
Confidence 33 3 6677777754 46788888766311110011 11111122222 467788887754
Q ss_pred CcccCeEEEEECCCC--cEEEccCCCCCCcceeEEEE--C---CEEEEEeccCCCccccEEEEEeCCCCc----EEEccC
Q psy10286 614 LSIFDSVERYDPKTD--EWTSVKPMLTKRCRLGVAAL--N---NKIYVCGGYDGAIFLQSVEMYDPITDE----WKMIAS 682 (748)
Q Consensus 614 ~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~i~v~GG~~~~~~~~~v~~yd~~~~~----W~~~~~ 682 (748)
.+..||..+. .|..+..+...........+ + +.+++.||.++ .+.+||..+.. ......
T Consensus 183 -----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 183 -----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp -----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESSS
T ss_pred -----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-----EEEEEeCCCCCccceeeeecc
Confidence 4777776543 45554433332333333333 4 68888888654 57778776652 222222
Q ss_pred CCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCC-CCceEecCCCCC
Q psy10286 683 MNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPS-TDSWAFVAPMCA 732 (748)
Q Consensus 683 ~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~ 732 (748)
......-.+++. -+++.++.||.++ .+.+||.. .+.|..+..+..
T Consensus 253 ~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~ 299 (379)
T 3jrp_A 253 EKFPDVLWRASWSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGEVHQ 299 (379)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEESSS-----SEEEEEEEETTEEEEEEEEC-
T ss_pred ccCCCcEEEEEEcCCCCEEEEecCCC-----cEEEEeCCCCCccccccceec
Confidence 111212222222 2677777777543 47888876 467877655443
|
| >3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B | Back alignment and structure |
|---|
Probab=97.53 E-value=1.2e-05 Score=80.23 Aligned_cols=66 Identities=21% Similarity=0.549 Sum_probs=53.6
Q ss_pred hhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHH
Q psy10286 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKY 296 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~ 296 (748)
+...|+.+++|+|+|.+.+..+++.+++.+|++|+++.|++.|++||.+.+++ -++-.++..+..+
T Consensus 81 ~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~------------~n~~~i~~~A~~~ 146 (256)
T 3hve_A 81 SVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAA------------ENCIGIRDFALHY 146 (256)
T ss_dssp CHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCS------------STTHHHHHHHHHT
T ss_pred CHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCH------------hhHHHHHHHHHHc
Confidence 34567779999999999999999999999999999999999999999976642 2455666655544
|
| >1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0001 Score=62.07 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=61.8
Q ss_pred cEEEE-ECCeEEeeeeeeeeccCHHHHHhhccc--ccccccceeeeecchheehhhccccccccccccccccccceeeee
Q psy10286 76 DVTIK-VDDQSFTCHRIVLAATIPYFQAMFTSD--MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITM 152 (748)
Q Consensus 76 Dv~i~-~~~~~~~aHk~iL~a~S~~F~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (748)
-|+|+ .+|++|.+++.+ |..|..++.|+... +.|.... .|.+
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~----------------------------------~Ipl 62 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETN----------------------------------EVNF 62 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------C----------------------------------EEEC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCC----------------------------------ceeC
Confidence 46777 488999999994 67899999999752 2222223 3455
Q ss_pred cCCCHHHHHHHHHhhhcee-----------EEeechhHHHHHHHHHHhcc
Q psy10286 153 QGIDAVAMEALINFVYSGR-----------VTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 153 ~~~~~~~~~~~l~flYtg~-----------~~i~~~~v~~ll~~A~~l~i 191 (748)
++|+..+++.+++|++.-. ..++.+.+.+|+.||++|+|
T Consensus 63 pnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 63 REIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 9999999999999998643 35788899999999999985
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.086 Score=54.07 Aligned_cols=258 Identities=13% Similarity=0.037 Sum_probs=134.1
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccc--ccccceEEecc-cccccCCCccceEEEEeCCCCceEEccCCCc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE--ETLSNAVISTK-SCLTKAGDSLSTVEVFDPLVGRWQMAEAMSM 497 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~--~~~~~~~~~~~-~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~ 497 (748)
++.+|+.............++.||+.+++....-. .......+..+ ..++..+.....++.+|+.+++-...-+...
T Consensus 52 g~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 131 (353)
T 3vgz_A 52 ENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDD 131 (353)
T ss_dssp TTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCC
T ss_pred CCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCC
Confidence 45677765332111123578999998876543221 11122233333 3344444444689999999887533222211
Q ss_pred c--------cceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-C-CEEEEEeCCC
Q psy10286 498 L--------RSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-N-DKLYVCGGYD 565 (748)
Q Consensus 498 ~--------r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~ 565 (748)
. ..-++++.. ++.+|+.+... ...++.||+.+.+-...-+.. ....++++.. + +.+|+..+
T Consensus 132 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-- 204 (353)
T 3vgz_A 132 RKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDGGNIKLKTAIQNT-GKMSTGLALDSEGKRLYTTNA-- 204 (353)
T ss_dssp CCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEETTTTEEEEEECCC-CTTCCCCEEETTTTEEEEECT--
T ss_pred CccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcCCCCceEEEecCC-CCccceEEECCCCCEEEEEcC--
Confidence 1 112334443 45688776321 246999999887644322211 1112233332 4 45666543
Q ss_pred CCCCCceEEEEeCCCCeEEEccCCCC--CCcc-eEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC
Q psy10286 566 GVSSLNTVECYEPDKDQWRIVKSMQK--HRSA-GGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640 (748)
Q Consensus 566 ~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 640 (748)
-..+..||+.+.+-...-..+. +... .+++.. ++.+|+.+.. .+.+..||+.+.+....-+.+.+
T Consensus 205 ----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~- 274 (353)
T 3vgz_A 205 ----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK-----AAEVLVVDTRNGNILAKVAAPES- 274 (353)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS-----SSEEEEEETTTCCEEEEEECSSC-
T ss_pred ----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC-----CCEEEEEECCCCcEEEEEEcCCC-
Confidence 2478899998886433322211 1222 223333 4567776543 35799999988876544333332
Q ss_pred cceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CC-EEEEEeC
Q psy10286 641 CRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MG-KLWAIGG 704 (748)
Q Consensus 641 ~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG 704 (748)
.+++.. ++.+|+.++.+ +.+.+||..+.+.... .+.+..-.+++.. ++ .||+.+.
T Consensus 275 --~~~~~s~dg~~l~v~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQA-----GKVSVIDAKSYKVVKT--FDTPTHPNSLALSADGKTLYVSVK 333 (353)
T ss_dssp --CCEEEETTTTEEEEEETTT-----TEEEEEETTTTEEEEE--EECCSEEEEEEECTTSCEEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCC-----CeEEEEECCCCeEEEE--EecCCCCCeEEEcCCCCEEEEEEc
Confidence 223322 34577776432 5799999988765443 2222222333332 44 5777653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.012 Score=58.31 Aligned_cols=216 Identities=12% Similarity=0.025 Sum_probs=113.1
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
...+..||+.+.......... ...-.+++.. ++.+|+..+ ...+.+||+.+......... ....-.+++..
T Consensus 45 ~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~------~~~i~~~d~~~~~~~~~~~~-~~~~p~~i~~~ 116 (270)
T 1rwi_B 45 YGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDF------NNRVVTLAAGSNNQTVLPFD-GLNYPEGLAVD 116 (270)
T ss_dssp SCEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEET------TTEEEEECTTCSCCEECCCC-SCSSEEEEEEC
T ss_pred CCcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcC------CCEEEEEeCCCceEeeeecC-CcCCCcceEEC
Confidence 356788888776654433211 1112334443 567888764 24689999988765443221 11222344443
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
+|++|+.... ...+.+||..+........... ..-.+++.. ++.+|+.... ...+.+||+.+..-..
T Consensus 117 ~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~ 185 (270)
T 1rwi_B 117 TQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVV 185 (270)
T ss_dssp TTCCEEEEEGG-----GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEE
T ss_pred CCCCEEEEECC-----CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC-----CCEEEEEecCCCceEe
Confidence 6789987542 2468888877665443321111 112234433 5788887643 2479999998776544
Q ss_pred ccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCC
Q psy10286 633 VKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSN 710 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~ 710 (748)
...... ..-.+++.- ++.+|+....+ +.+.+||+....-...... ....-.+++.. +++||+....+
T Consensus 186 ~~~~~~-~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~---- 254 (270)
T 1rwi_B 186 LPFTDI-TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTSTVLPFT-GLNTPLAVAVDSDRTVYVADRGN---- 254 (270)
T ss_dssp CCCSSC-CSEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCCEECCCC-SCSCEEEEEECTTCCEEEEEGGG----
T ss_pred ecccCC-CCceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcceeeccC-CCCCceeEEECCCCCEEEEECCC----
Confidence 321111 122333333 46888876432 4688999877543332211 11112333332 57888886532
Q ss_pred CCeEEEEeCCCC
Q psy10286 711 LPTVEVYDPSTD 722 (748)
Q Consensus 711 ~~~v~~yd~~~~ 722 (748)
..|.+|++...
T Consensus 255 -~~v~~~~~~~~ 265 (270)
T 1rwi_B 255 -DRVVKLTSLEH 265 (270)
T ss_dssp -TEEEEECCCGG
T ss_pred -CEEEEEcCCCc
Confidence 46888887543
|
| >3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=62.87 Aligned_cols=49 Identities=24% Similarity=0.375 Sum_probs=44.2
Q ss_pred hhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
+...|+.+++|+|||.+.+..+|+.+++.+|++|+++.|++.|++++.+
T Consensus 69 ~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 69 SPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp CHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 4567788999999999999999999999999999999999999998763
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.031 Score=59.98 Aligned_cols=265 Identities=18% Similarity=0.222 Sum_probs=139.7
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceee-cccccc-cceEEecccccccCCCccceEEEEeCCCCceEEccCCCcc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQM-AEEETL-SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSML 498 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~ 498 (748)
++..++.|+.+ .++..||..+++-.. +..... ..++...+. ....|..-..+..||..+++-... +...
T Consensus 128 ~g~~l~sg~~d------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~--~~~h 198 (445)
T 2ovr_B 128 CGNRIVSGSDD------NTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-IIISGSTDRTLKVWNAETGECIHT--LYGH 198 (445)
T ss_dssp ETTEEEEEETT------SCEEEEETTTCCEEEECCCCSSCEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEE--ECCC
T ss_pred cCCEEEEEECC------CcEEEEECCCCcEEEEEcCCCCCEEEEEecCC-EEEEEeCCCeEEEEECCcCcEEEE--ECCC
Confidence 44556666643 257888877665432 111110 011111122 222223335688889887754322 1111
Q ss_pred cceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeC
Q psy10286 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEP 578 (748)
Q Consensus 499 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~ 578 (748)
.....+...++..++.|+.+ ..+..||..+.+-...-. .......++..++..++.|+.+ ..+..||+
T Consensus 199 ~~~v~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~ 266 (445)
T 2ovr_B 199 TSTVRCMHLHEKRVVSGSRD-----ATLRVWDIETGQCLHVLM--GHVAAVRCVQYDGRRVVSGAYD-----FMVKVWDP 266 (445)
T ss_dssp SSCEEEEEEETTEEEEEETT-----SEEEEEESSSCCEEEEEE--CCSSCEEEEEECSSCEEEEETT-----SCEEEEEG
T ss_pred CCcEEEEEecCCEEEEEeCC-----CEEEEEECCCCcEEEEEc--CCcccEEEEEECCCEEEEEcCC-----CEEEEEEC
Confidence 12222333345556667644 468889988765332211 1112223344477777788755 36788888
Q ss_pred CCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEecc
Q psy10286 579 DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGY 658 (748)
Q Consensus 579 ~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 658 (748)
.+.+-.. .+............++..++.|+.++ .+..||..+.+-... +............++..++.|+.
T Consensus 267 ~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~ 337 (445)
T 2ovr_B 267 ETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNA 337 (445)
T ss_dssp GGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS-----CEEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEET
T ss_pred CCCcEeE--EecCCCCceEEEEECCCEEEEEeCCC-----eEEEEECCCCCEEEE--EcCCcccEEEEEEeCCEEEEEeC
Confidence 7765322 22222222333444777777777643 588999887653322 11222223334445667777775
Q ss_pred CCCccccEEEEEeCCCCcEEE-ccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 659 DGAIFLQSVEMYDPITDEWKM-IASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 659 ~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
+ ..+.+||..+.+-.. +...........++..++..++.||.+ ..|.+||..+++..
T Consensus 338 d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~ 395 (445)
T 2ovr_B 338 D-----STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFI 395 (445)
T ss_dssp T-----SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEE
T ss_pred C-----CeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCC-----CeEEEEECCCCcee
Confidence 4 368889987765332 222111223344455677888888754 36899999887653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.018 Score=56.85 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=101.1
Q ss_pred eEEEEEC-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 549 VGAAALN-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 549 ~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
++.+..+ +.+|+..|..+ -+.+..+|+.+++=...-+++...+..+.+..++++|+.... .+.+.+||+.+
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-----~~~v~viD~~t 95 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYG---RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWL-----KNIGFIYDRRT 95 (266)
T ss_dssp EEEEECSTTEEEEEECSTT---TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETT-----CSEEEEEETTT
T ss_pred ccEEEeCCCeEEEECCCCC---CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEec-----CCEEEEEECCC
Confidence 6676665 89999877432 268999999999865544455544556777889999999764 35799999987
Q ss_pred CcEEEccCCCCC-CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE-c--cCCCCCC-cceEEEEECCEEEEE
Q psy10286 628 DEWTSVKPMLTK-RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-I--ASMNVMR-SRVALVANMGKLWAI 702 (748)
Q Consensus 628 ~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~--~~~p~~r-~~~~~~~~~~~l~v~ 702 (748)
.+-. ...+.+ ..+.+.+.-++++|+..| .+.++.+|+.+.+-.. + +.-+.+. .-..+...++++|+-
T Consensus 96 ~~v~--~~i~~g~~~g~glt~Dg~~l~vs~g------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn 167 (266)
T 2iwa_A 96 LSNI--KNFTHQMKDGWGLATDGKILYGSDG------TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWAN 167 (266)
T ss_dssp TEEE--EEEECCSSSCCEEEECSSSEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred CcEE--EEEECCCCCeEEEEECCCEEEEECC------CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEe
Confidence 6532 223322 334455555677888754 3689999999876432 2 2211121 112333448899876
Q ss_pred eCCCCCCCCCeEEEEeCCCCce
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (748)
-. ..++|.+.|+++++=
T Consensus 168 ~~-----~~~~V~vID~~tg~V 184 (266)
T 2iwa_A 168 IW-----QTDCIARISAKDGTL 184 (266)
T ss_dssp ET-----TSSEEEEEETTTCCE
T ss_pred cC-----CCCeEEEEECCCCcE
Confidence 43 235899999998753
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0067 Score=59.29 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=103.5
Q ss_pred eEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 549 VGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
.+....++.+|+..|..+ .+..+|+.+++=...- ++..-++.+++..+++||+.... .+.+++||+++.
T Consensus 58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~-----~~~v~V~D~~Tl 126 (268)
T 3nok_A 58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWT-----EGLLFTWSGMPP 126 (268)
T ss_dssp EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESS-----SCEEEEEETTTT
T ss_pred ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEcc-----CCEEEEEECCcC
Confidence 566667899999999654 3889999988743333 55555666788889999998765 357999999887
Q ss_pred cEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE-c--cCCCCCCcc-eEEEEECCEEEEEeC
Q psy10286 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-I--ASMNVMRSR-VALVANMGKLWAIGG 704 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~--~~~p~~r~~-~~~~~~~~~l~v~GG 704 (748)
+-.. ..+.+..+.+++.-++++|+.-| .+.++.+|+++.+-.. + +.-+.+... -.+...+|+||+--
T Consensus 127 ~~~~--ti~~~~eGwGLt~Dg~~L~vSdG------s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanv- 197 (268)
T 3nok_A 127 QRER--TTRYSGEGWGLCYWNGKLVRSDG------GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANI- 197 (268)
T ss_dssp EEEE--EEECSSCCCCEEEETTEEEEECS------SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE-
T ss_pred cEEE--EEeCCCceeEEecCCCEEEEECC------CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEE-
Confidence 6443 33334456677777889999876 3689999999976443 2 221212111 12344589988532
Q ss_pred CCCCCCCCeEEEEeCCCCce
Q psy10286 705 YDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W 724 (748)
+ ..++|.+.||++++=
T Consensus 198 w----~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 198 W----HSSDVLEIDPATGTV 213 (268)
T ss_dssp T----TCSEEEEECTTTCBE
T ss_pred C----CCCeEEEEeCCCCcE
Confidence 1 235899999999853
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.018 Score=67.22 Aligned_cols=217 Identities=10% Similarity=0.093 Sum_probs=125.5
Q ss_pred ceEEEEeCCCCceEEccCC-Ccc-cceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAM-SML-RSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~-~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~ 552 (748)
.-+.+||+.++++...... ..+ ..-.+++.. ++.||+ |.. ...+.+||+.+++++...... ....-.+.+
T Consensus 383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTY-----LGNISYYNTRLKKFQIIELEKNELLDVRVFY 456 (781)
T ss_dssp SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EET-----TEEEEEECSSSCEEEECCSTTTCCCCEEEEE
T ss_pred CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-Eec-----cCCEEEEcCCCCcEEEeccCCCCCCeEEEEE
Confidence 3588899988777654211 111 122333333 677887 322 135899999999998875321 112222333
Q ss_pred EE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC----CCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECC
Q psy10286 553 AL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK----HRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~----~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
.. +|.||+... ..+.+||+.+++|......+. ...-.+++. .+|.|++-... ..+++||+.
T Consensus 457 ~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~------~Gl~~~~~~ 523 (781)
T 3v9f_A 457 EDKNKKIWIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG------GGVGIYTPD 523 (781)
T ss_dssp ECTTSEEEEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS------SCEEEECTT
T ss_pred ECCCCCEEEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC------CCEEEEeCC
Confidence 33 578887432 468999999998876643321 111122222 25677764321 248999999
Q ss_pred CCcEEEccC---CCCCCcceeEEE-ECCEEEEEeccCCCccccEE-EEEeCCCCcEEEccC---CCCCCcceEEEEE-CC
Q psy10286 627 TDEWTSVKP---MLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSV-EMYDPITDEWKMIAS---MNVMRSRVALVAN-MG 697 (748)
Q Consensus 627 ~~~W~~~~~---~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v-~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~ 697 (748)
+++++.... ++.... .+++. -++.||+... +.+ .+||++++++..... +|.... .+++.- +|
T Consensus 524 ~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g 594 (781)
T 3v9f_A 524 MQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNG 594 (781)
T ss_dssp CCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSS
T ss_pred CCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCC
Confidence 999887653 221111 22222 2567877643 346 899999988877642 333332 233333 57
Q ss_pred EEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 698 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.|++.+. +.+.+|||++++++...
T Consensus 595 ~lW~~t~-------~Gl~~~~~~~~~~~~~~ 618 (781)
T 3v9f_A 595 NIWASTN-------TGISCYITSKKCFYTYD 618 (781)
T ss_dssp CEEEECS-------SCEEEEETTTTEEEEEC
T ss_pred CEEEEcC-------CceEEEECCCCceEEec
Confidence 8887653 35899999999887754
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.067 Score=57.32 Aligned_cols=267 Identities=16% Similarity=0.197 Sum_probs=138.8
Q ss_pred cEEEEEcCccCCCCCCcceEeecCCCCceeec-ccccc-cceEEecccccccCCCccceEEEEeCCCCceEEccCCCccc
Q psy10286 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EEETL-SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLR 499 (748)
Q Consensus 422 ~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r 499 (748)
+.+++.||.+ ..+..||..+++-... ..... ...+...+. ....|..-..+..||..+++-...- ....
T Consensus 169 ~~~l~s~~~d------g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~ 239 (445)
T 2ovr_B 169 DNIIISGSTD------RTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSGSRDATLRVWDIETGQCLHVL--MGHV 239 (445)
T ss_dssp TTEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEEETTSEEEEEESSSCCEEEEE--ECCS
T ss_pred CCEEEEEeCC------CeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEEeCCCEEEEEECCCCcEEEEE--cCCc
Confidence 4456666653 2578888777654321 11111 111111122 2222233357888898876543221 1111
Q ss_pred ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCC
Q psy10286 500 SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPD 579 (748)
Q Consensus 500 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (748)
....+...++..++.|+.+ ..+..||+.+.+-... +........+...++..++.|+.+ ..+..||..
T Consensus 240 ~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----~~i~i~d~~ 307 (445)
T 2ovr_B 240 AAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLD-----TSIRVWDVE 307 (445)
T ss_dssp SCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETT-----SCEEEEETT
T ss_pred ccEEEEEECCCEEEEEcCC-----CEEEEEECCCCcEeEE--ecCCCCceEEEEECCCEEEEEeCC-----CeEEEEECC
Confidence 2222333477777778754 3578889877653322 111112223334477777777755 468889988
Q ss_pred CCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCC-CCCcceeEEEECCEEEEEecc
Q psy10286 580 KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAALNNKIYVCGGY 658 (748)
Q Consensus 580 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~ 658 (748)
+.+-... +............++..++.|+.++ .+..||..+.+-...-..+ .......+...++..++.||.
T Consensus 308 ~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 380 (445)
T 2ovr_B 308 TGNCIHT--LTGHQSLTSGMELKDNILVSGNADS-----TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 380 (445)
T ss_dssp TCCEEEE--ECCCCSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEET
T ss_pred CCCEEEE--EcCCcccEEEEEEeCCEEEEEeCCC-----eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeC
Confidence 7653221 1111222233334555667777643 5889998776543221111 122334445557777888875
Q ss_pred CCCccccEEEEEeCCCCcEEE-ccCCC-CC-Cc-ceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 659 DGAIFLQSVEMYDPITDEWKM-IASMN-VM-RS-RVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 659 ~~~~~~~~v~~yd~~~~~W~~-~~~~p-~~-r~-~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+ ..+.+||..+.+... +.... .. .. -.++... ++.+++.|+.++. ....+.+||...+
T Consensus 381 d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~-~~~~l~v~df~~~ 443 (445)
T 2ovr_B 381 D-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT-EETKLLVLDFDVD 443 (445)
T ss_dssp T-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS-SCCEEEEEECCCC
T ss_pred C-----CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC-CccEEEEEECCCC
Confidence 4 478999998876543 21111 11 11 1222222 5666677776654 2346888887653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.16 Score=50.51 Aligned_cols=220 Identities=10% Similarity=0.075 Sum_probs=116.4
Q ss_pred ceEEEEeCCCCceEEccCCC----cccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeE
Q psy10286 477 STVEVFDPLVGRWQMAEAMS----MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVG 550 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 550 (748)
..+..||+............ ....-.++++. ++.+|+.+.. ....+.+||+....-..+.. +....-++
T Consensus 51 ~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----~~~~i~~~d~~g~~~~~~~~-~~~~~~~~ 125 (286)
T 1q7f_A 51 HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQIYNQYGQFVRKFGA-TILQHPRG 125 (286)
T ss_dssp TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEEEECTTSCEEEEECT-TTCSCEEE
T ss_pred CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----CCCEEEEECCCCcEEEEecC-ccCCCceE
Confidence 56888988754433332211 11122445553 6789988632 12468899965554333322 11112234
Q ss_pred EEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 551 AAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
++.. +|++|+.... ...+.+||+................-.+++.. ++.+|+.+.. ...+.+||+...
T Consensus 126 i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~ 195 (286)
T 1q7f_A 126 VTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR-----AHCVKVFNYEGQ 195 (286)
T ss_dssp EEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-----GTEEEEEETTCC
T ss_pred EEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-----CCEEEEEcCCCC
Confidence 4443 6789987643 25789999876655444321111111233333 6789987653 357999998766
Q ss_pred cEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCC
Q psy10286 629 EWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYD 706 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~ 706 (748)
....+........-.+++.- ++.+|+.+..++ ..|.+||+....-..+..-.....-.+++.. ++++||... +
T Consensus 196 ~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~-~ 270 (286)
T 1q7f_A 196 YLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK-D 270 (286)
T ss_dssp EEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-T
T ss_pred EEEEEccCCccCCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC-C
Confidence 54444321111112233332 578888875321 2799999876544444321111112233333 789998842 2
Q ss_pred CCCCCCeEEEEeCCC
Q psy10286 707 GVSNLPTVEVYDPST 721 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~ 721 (748)
+.|.+|+...
T Consensus 271 -----~~v~v~~~~~ 280 (286)
T 1q7f_A 271 -----YRLYIYRYVQ 280 (286)
T ss_dssp -----TEEEEEECSC
T ss_pred -----CeEEEEEccc
Confidence 4688887643
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.04 Score=64.30 Aligned_cols=215 Identities=9% Similarity=0.165 Sum_probs=125.2
Q ss_pred ceEEEEeCCCCceEEccCCC-------cccceeEEEEE-CCE-EEEEccCCCCCCCCeEEEEECCCCeEEEccC----CC
Q psy10286 477 STVEVFDPLVGRWQMAEAMS-------MLRSRVGVAVM-KNR-LYAFGGYNGSERLSTVEEFDPVRRVWNKVSP----MC 543 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~-------~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~----~~ 543 (748)
.-+.+||+.++++......+ ....-.+++.. ++. ||+ |... ..+.+||+.++++..... ++
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWi-gt~~-----~Gl~~~d~~~~~~~~~~~~~~~l~ 450 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHA-----GGLSILHRNSGQVENFNQRNSQLV 450 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEE-EETT-----TEEEEEETTTCCEEEECTTTSCCS
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEE-EeCc-----CceeEEeCCCCcEEEeecCCCCcC
Confidence 35889999999887764321 11222344443 566 776 3221 358899999998877643 12
Q ss_pred CCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC--C--CCCcc-eEEEE-ECCEEEEEccCCCCcc
Q psy10286 544 FKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM--Q--KHRSA-GGVIA-FDSYVYALGGHDGLSI 616 (748)
Q Consensus 544 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--~--~~r~~-~~~~~-~~~~iyv~GG~~~~~~ 616 (748)
.. .-.+.+.. +|.||+... ..+.+||+.+++|+..... + .+... .++.. .+|.|++-..
T Consensus 451 ~~-~v~~i~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------ 516 (795)
T 4a2l_A 451 NE-NVYAILPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE------ 516 (795)
T ss_dssp CS-CEEEEEECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES------
T ss_pred CC-eeEEEEECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC------
Confidence 11 11222222 577887532 3589999999999887533 1 11111 12222 2577887543
Q ss_pred cCeEEEEECCCCcEEEccCC---C-CC-CcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccC---CCCCC
Q psy10286 617 FDSVERYDPKTDEWTSVKPM---L-TK-RCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS---MNVMR 687 (748)
Q Consensus 617 ~~~~~~yd~~~~~W~~~~~~---p-~~-r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r 687 (748)
..+++||+.++++ ..... + .+ ..-.+++. -+|.||+... ..+++||++++++..... +|...
T Consensus 517 -~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~ 587 (795)
T 4a2l_A 517 -EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV 587 (795)
T ss_dssp -SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------SCEEEEETTTTEEEEECGGGTCSCSC
T ss_pred -CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------CCceeECCCCCcEEEeCCCCCCchhh
Confidence 2489999999888 43311 1 11 11122222 2577887542 248899999999887642 33322
Q ss_pred cceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 688 SRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 688 ~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
. .+++.- +|.|++.+. +.+.+|||++++++...
T Consensus 588 i-~~i~~d~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~ 621 (795)
T 4a2l_A 588 V-YGILEDSFGRLWLSTN-------RGISCFNPETEKFRNFT 621 (795)
T ss_dssp E-EEEEECTTSCEEEEET-------TEEEEEETTTTEEEEEC
T ss_pred e-EEEEECCCCCEEEEcC-------CceEEEcCCCCcEEEcC
Confidence 1 222222 578888763 36899999999888654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0069 Score=65.07 Aligned_cols=267 Identities=16% Similarity=0.169 Sum_probs=132.7
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCceeec-ccccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcc
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSML 498 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~ 498 (748)
.++..++.|+.+ ..+.+||..+++-... .........+..++.....|..-..+..||..+++-... +...
T Consensus 141 ~d~~~l~~g~~d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~--~~~h 212 (435)
T 1p22_A 141 YDDQKIVSGLRD------NTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT--LIHH 212 (435)
T ss_dssp CCSSEEEEEESS------SCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE--ECCC
T ss_pred ECCCEEEEEeCC------CeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEE--EcCC
Confidence 456667777653 2578888776554322 111111111112222223333345688899887764322 1111
Q ss_pred cceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE-ccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEe
Q psy10286 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYE 577 (748)
Q Consensus 499 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 577 (748)
.........++..++.||.+ ..+..||..+..-.. ...+........++..++..++.|+.+ ..+..||
T Consensus 213 ~~~v~~l~~~~~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~vwd 282 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD-----RTIKVWN 282 (435)
T ss_dssp CSCEEEEECCTTEEEEEETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEE
T ss_pred CCcEEEEEEcCCEEEEeeCC-----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEE
Confidence 22223333355567777754 357888887654211 011111112223333466666677654 4688899
Q ss_pred CCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEec
Q psy10286 578 PDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 578 ~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 657 (748)
..+.+-... +........+...++..++.|+.++ .+..||..+.+-... +........++.+++..++.|+
T Consensus 283 ~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~l~sg~ 353 (435)
T 1p22_A 283 TSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGACLRV--LEGHEELVRCIRFDNKRIVSGA 353 (435)
T ss_dssp TTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEECCSSEEEEEE
T ss_pred CCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCC-----eEEEEECCCCCEEEE--EeCCcCcEEEEEecCCEEEEEe
Confidence 887653222 1111222334444666777777643 588999887653221 2222223344455788888888
Q ss_pred cCCCccccEEEEEeCCCCc----------EEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 658 YDGAIFLQSVEMYDPITDE----------WKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~----------W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
.++ .+.+||..+.. -..+..... ....+..++..++.||.+ ..+.+||..++.-..
T Consensus 354 ~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~l~s~s~D-----g~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 354 YDG-----KIKVWDLVAALDPRAPAGTLCLRTLVEHSG---RVFRLQFDEFQIVSSSHD-----DTILIWDFLNDPAAQ 419 (435)
T ss_dssp TTS-----CEEEEEHHHHTSTTSCTTTTEEEEECCCSS---CCCCEEECSSCEEECCSS-----SEEEEEC--------
T ss_pred CCC-----cEEEEECCCCCCccccccchheeeccCCCC---CeEEEEeCCCEEEEEeCC-----CEEEEEECCCCCCcc
Confidence 653 57778764332 112211111 112223377778888754 368999988765443
|
| >3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=6.3e-05 Score=65.98 Aligned_cols=74 Identities=22% Similarity=0.490 Sum_probs=50.1
Q ss_pred HHHHHHHhhhcccC--CcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q psy10286 195 ADACADFLKKRFHP--NNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 268 (748)
Q Consensus 195 ~~~c~~~l~~~l~~--~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~ 268 (748)
...++.|+...+.. .+.+.+-.-.+...|+.+++|+|+|.+.+..+|+.+++.+|++|+++.|++.|++||.+.
T Consensus 52 Laa~S~~F~~~f~~~~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 52 LAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHBHHHHHHHHHCCCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHcCHHHHHHHcCCCCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34455555443332 233333223566788999999999999999999999999999999999999999999753
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.041 Score=56.24 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=99.2
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.+.+.|+.+ ..+..+|..+.+-...-....... .+++. -+++.++.|+.+ ..+..||..+..-...
T Consensus 91 ~~~~l~s~s~D-----~~i~lWd~~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~ 159 (321)
T 3ow8_A 91 TLPIAASSSLD-----AHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYS 159 (321)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCC-CCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCCEEEEEeCCCccE-EEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEE
Confidence 44566667654 468888988876432211111111 12222 267777777754 4678888877653222
Q ss_pred cCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCcc
Q psy10286 587 KSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIF 663 (748)
Q Consensus 587 ~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~ 663 (748)
-... ...-.+++. -+++.++.|+.++ .+..||..+.+-... +.........+.+ ++.+++.|+.+
T Consensus 160 ~~~~-~~~v~~~~~spdg~~lasg~~dg-----~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~d---- 227 (321)
T 3ow8_A 160 LDTR-GKFILSIAYSPDGKYLASGAIDG-----IINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDD---- 227 (321)
T ss_dssp EECS-SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTT----
T ss_pred ecCC-CceEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCC----
Confidence 1111 111112222 2667777787654 588999988754322 1111111122223 67788888765
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..+.+||..+...... +.........+.. +++.++.||.++ .+.+||..+++
T Consensus 228 -g~i~iwd~~~~~~~~~--~~~h~~~v~~~~~sp~~~~l~s~s~D~-----~v~iwd~~~~~ 281 (321)
T 3ow8_A 228 -GYIKIYDVQHANLAGT--LSGHASWVLNVAFCPDDTHFVSSSSDK-----SVKVWDVGTRT 281 (321)
T ss_dssp -SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTE
T ss_pred -CeEEEEECCCcceeEE--EcCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCE
Confidence 3588899877654322 2111222222333 577777887543 58888887764
|
| >3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A | Back alignment and structure |
|---|
Probab=97.23 E-value=2.3e-05 Score=80.65 Aligned_cols=46 Identities=17% Similarity=0.397 Sum_probs=41.9
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHH
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l 265 (748)
...|+.+++|+|++.+.+..+++.+|+.+|++|+++.|++.|+++|
T Consensus 223 ~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l 268 (312)
T 3hqi_A 223 PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDAL 268 (312)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3566779999999999888899999999999999999999999886
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.044 Score=63.79 Aligned_cols=245 Identities=10% Similarity=0.102 Sum_probs=136.1
Q ss_pred eEeecCCCCceeeccc-ccc----cceEEec-ccccccCCCccceEEEEeCCCCceEEccCCCcc-cceeEEEEE-CCEE
Q psy10286 440 VEVFDPLVGRWQMAEE-ETL----SNAVIST-KSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSML-RSRVGVAVM-KNRL 511 (748)
Q Consensus 440 ~~~y~~~~~~W~~~~~-~~~----~~~~~~~-~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~-~~~i 511 (748)
+.+||+.++++..... ... ..+++.. .+.+.. |....-+.+||+.+++++.......+ ..-.+++.. ++.|
T Consensus 385 l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l 463 (781)
T 3v9f_A 385 INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI 463 (781)
T ss_dssp EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE
T ss_pred EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE
Confidence 6788888777765421 111 1122222 333333 22235689999999999887532111 122233333 5678
Q ss_pred EEEccCCCCCCCCeEEEEECCCCeEEEccCCC---C-CcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 512 YAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC---F-KRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 512 yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~---~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
|+... ..+.+||+.+++|......+ . ...-.+++.- +|.||+... . ..+.+||+.+++++..
T Consensus 464 wigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-----~Gl~~~~~~~~~~~~~ 530 (781)
T 3v9f_A 464 WIGTH-------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF-G-----GGVGIYTPDMQLVRKF 530 (781)
T ss_dssp EEEET-------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES-S-----SCEEEECTTCCEEEEE
T ss_pred EEEEC-------CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc-C-----CCEEEEeCCCCeEEEc
Confidence 87432 35899999998887654322 0 1111222222 678887432 1 3488999999998877
Q ss_pred cC---CCCCCcceEEEE-ECCEEEEEccCCCCcccCeE-EEEECCCCcEEEcc---CCCCCCcceeEEEE-CCEEEEEec
Q psy10286 587 KS---MQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSV-ERYDPKTDEWTSVK---PMLTKRCRLGVAAL-NNKIYVCGG 657 (748)
Q Consensus 587 ~~---~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~-~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG 657 (748)
.. ++.... .+++. .+|.|++-.. ..+ .+||+.++++.... .+|.... .+++.- +|.||+.+.
T Consensus 531 ~~~~~l~~~~i-~~i~~d~~g~lWi~T~-------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~ 601 (781)
T 3v9f_A 531 NQYEGFCSNTI-NQIYRSSKGQMWLATG-------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN 601 (781)
T ss_dssp CTTTTCSCSCE-EEEEECTTSCEEEEET-------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS
T ss_pred cCCCCCCCCee-EEEEECCCCCEEEEEC-------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC
Confidence 53 221111 12222 2577777543 246 89999998887664 2333332 333333 577887753
Q ss_pred cCCCccccEEEEEeCCCCcEEEcc---CCCCCCcceEEEE-E-CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 658 YDGAIFLQSVEMYDPITDEWKMIA---SMNVMRSRVALVA-N-MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~-~-~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
+.+.+||+++.++.... .++...+...++. . +|+||+ ||.+ .+..|||+.
T Consensus 602 -------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~------Gl~~f~p~~ 656 (781)
T 3v9f_A 602 -------TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSIN------GLCFFNPDI 656 (781)
T ss_dssp -------SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETT------EEEEECSCC
T ss_pred -------CceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCC------ceEEEChhh
Confidence 45889999999988764 2444443333333 3 566655 5532 456666654
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.21 E-value=0.17 Score=50.88 Aligned_cols=226 Identities=15% Similarity=0.165 Sum_probs=112.7
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecc-c--ccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAE-E--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSM 497 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~-~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~ 497 (748)
++..++.|+.++ .+..|+..+++....- . ..+....+..++.....|..-..+..||..+++-... +..
T Consensus 34 ~~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~ 105 (312)
T 4ery_A 34 NGEWLASSSADK------LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT--LKG 105 (312)
T ss_dssp TSSEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--EEC
T ss_pred CCCEEEEeeCCC------eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEE--EcC
Confidence 344566666432 4677777766654321 1 1111222333333333333345788889887754221 111
Q ss_pred ccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceE
Q psy10286 498 LRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 498 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 573 (748)
.......+.. ++..++.|+.+ ..+..||..+.+-... ++..........+ ++..++.|+.+ ..+
T Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i 173 (312)
T 4ery_A 106 HSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYD-----GLC 173 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCC-----CcE
Confidence 1111112222 55677777754 3588899887653322 1111111222222 66777788765 368
Q ss_pred EEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEc-cCCCCCCcc-eeEEE-EC
Q psy10286 574 ECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-KPMLTKRCR-LGVAA-LN 649 (748)
Q Consensus 574 ~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p~~r~~-~~~~~-~~ 649 (748)
..||..+.+....-.......-..++. -++..++.|+.+ ..+..||..+.+-... ......... ..... -+
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence 889988766432211111111111222 256666667664 3688899887754322 111111111 12222 35
Q ss_pred CEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 650 NKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 650 ~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
+.+++.||.+ ..+.+||..+.+
T Consensus 249 ~~~l~sg~~d-----g~i~vwd~~~~~ 270 (312)
T 4ery_A 249 GKWIVSGSED-----NLVYIWNLQTKE 270 (312)
T ss_dssp SCEEEECCTT-----SCEEEEETTTCC
T ss_pred CcEEEEECCC-----CEEEEEECCCch
Confidence 6777788764 368889988765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.048 Score=57.63 Aligned_cols=255 Identities=13% Similarity=0.168 Sum_probs=130.2
Q ss_pred ceEeecCCCCceeeccccc----ccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEE
Q psy10286 439 TVEVFDPLVGRWQMAEEET----LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAF 514 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~ 514 (748)
.+..||..+++........ +....+..++.....|..-..+..||..+++....-. ...........++.+++.
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~l~~ 191 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--GHQARVGCLSWNRHVLSS 191 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--CCSSCEEEEEEETTEEEE
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--CCCCceEEEEECCCEEEE
Confidence 5888888887765543221 1122233333333333333568889988776433221 112222333346667777
Q ss_pred ccCCCCCCCCeEEEEECCCCeE--EEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC
Q psy10286 515 GGYNGSERLSTVEEFDPVRRVW--NKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 515 GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
|+.+ ..+..||..+..- ..... ....-.+++.. ++..++.||.+ ..+..||..+..-...-. ..
T Consensus 192 ~~~d-----g~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~-~~ 258 (401)
T 4aez_A 192 GSRS-----GAIHHHDVRIANHQIGTLQG--HSSEVCGLAWRSDGLQLASGGND-----NVVQIWDARSSIPKFTKT-NH 258 (401)
T ss_dssp EETT-----SEEEEEETTSSSCEEEEEEC--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCSSEEEEEC-CC
T ss_pred EcCC-----CCEEEEecccCcceeeEEcC--CCCCeeEEEEcCCCCEEEEEeCC-----CeEEEccCCCCCccEEec-CC
Confidence 7754 4688899874321 11111 11111222222 67777888755 468889988754322111 11
Q ss_pred CCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CC-EEEEEeccCCCccccE
Q psy10286 592 HRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NN-KIYVCGGYDGAIFLQS 666 (748)
Q Consensus 592 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~ 666 (748)
...-.+++.. ++.+++.||... -..+..||..+.+-...-. ... ....+.+ ++ .+++.+|... ..
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~---d~~i~i~d~~~~~~~~~~~--~~~-~v~~~~~s~~~~~l~~~~g~~d----g~ 328 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTM---DKQIHFWNAATGARVNTVD--AGS-QVTSLIWSPHSKEIMSTHGFPD----NN 328 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTT---TCEEEEEETTTCCEEEEEE--CSS-CEEEEEECSSSSEEEEEECTTT----CE
T ss_pred cceEEEEEECCCCCCEEEEecCCC---CCEEEEEECCCCCEEEEEe--CCC-cEEEEEECCCCCeEEEEeecCC----Cc
Confidence 1111233333 456777765211 2468899988776433221 111 1222333 34 4544444322 47
Q ss_pred EEEEeCCCCcEEEccCCCCCCcce-EEE-EECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 667 VEMYDPITDEWKMIASMNVMRSRV-ALV-ANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 667 v~~yd~~~~~W~~~~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+.+||..+........++...... +++ .-+++.++.||.+ ..+.+||..++.
T Consensus 329 i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d-----g~i~iw~~~~~~ 382 (401)
T 4aez_A 329 LSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD-----ENLKFWRVYDGD 382 (401)
T ss_dssp EEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT-----SEEEEEECCC--
T ss_pred EEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCc
Confidence 888998887776654333222222 222 2367777888754 368899987765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.055 Score=62.02 Aligned_cols=274 Identities=11% Similarity=-0.029 Sum_probs=142.5
Q ss_pred cceEeecCCCCceeeccc--ccccceEEecccc-cccCCCccceEEEEeCCC-----CceEEccCCCcccc---------
Q psy10286 438 STVEVFDPLVGRWQMAEE--ETLSNAVISTKSC-LTKAGDSLSTVEVFDPLV-----GRWQMAEAMSMLRS--------- 500 (748)
Q Consensus 438 ~~~~~y~~~~~~W~~~~~--~~~~~~~~~~~~~-~~~~g~~~~~~~~yd~~~-----~~W~~~~~~~~~r~--------- 500 (748)
.+++.||..+++-..+.. .......+++++. +... .-..++.+|..+ ++...+........
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 467888887776554432 1222333343332 1111 225789999988 77766544332211
Q ss_pred ----eeEEEEE-CCEEEEEccCCC----------------------------CCCCCeEEEEECCCCeEEEccCCCCCcc
Q psy10286 501 ----RVGVAVM-KNRLYAFGGYNG----------------------------SERLSTVEEFDPVRRVWNKVSPMCFKRS 547 (748)
Q Consensus 501 ----~~~~~~~-~~~iyv~GG~~~----------------------------~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 547 (748)
..+++.. +|+..+++..+. ......++++|..+.+-..+........
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 1122222 555445544211 1133579999999987665543211112
Q ss_pred eeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCc----ceEEEEE--CCEEEEEccCCCCcccC
Q psy10286 548 AVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRS----AGGVIAF--DSYVYALGGHDGLSIFD 618 (748)
Q Consensus 548 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~----~~~~~~~--~~~iyv~GG~~~~~~~~ 618 (748)
....+.. +|+..++++.+.......++.+|+.+. .+..+........ ......- +|++++.+..++ ..
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g---~~ 335 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG---WN 335 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS---SC
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC---cc
Confidence 2222222 666444544443334468999999988 6665532111111 1122223 677666555443 35
Q ss_pred eEEEEECCCCcEEEccCCCCCCcceeEEEE--C-CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE
Q psy10286 619 SVERYDPKTDEWTSVKPMLTKRCRLGVAAL--N-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN 695 (748)
Q Consensus 619 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 695 (748)
.+|.+|........+..-.... .....+ + +.||+.+..++ .....++.+|..+.....+.. ....+.+...
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~s 409 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTEAS-PLERHFYCIDIKGGKTKDLTP---ESGMHRTQLS 409 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESSSC-TTCBEEEEEETTCCCCEESCC---SSSEEEEEEC
T ss_pred EEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecCCC-CceEEEEEEEcCCCCceeccC---CCceEEEEEC
Confidence 7999997777777764322111 121233 3 45666654322 223589999998877666642 1122333332
Q ss_pred -CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 696 -MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 696 -~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+++.+++.+.+.. ...+++++|..+++
T Consensus 410 pdg~~l~~~~~~~~-~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 410 PDGSAIIDIFQSPT-VPRKVTVTNIGKGS 437 (706)
T ss_dssp TTSSEEEEEEECSS-CSCEEEEEESSSCE
T ss_pred CCCCEEEEEecCCC-CCcEEEEEECCCCe
Confidence 5666666543221 23468999988775
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=97.14 E-value=0.1 Score=52.63 Aligned_cols=217 Identities=13% Similarity=0.139 Sum_probs=112.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..+..+|..+++....-.- ....-.+++.. ++..++.||.+ ..+..||..+++-...-.-... .-.++...
T Consensus 45 g~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~ 117 (312)
T 4ery_A 45 KLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSASDD-----KTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNP 117 (312)
T ss_dssp SCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSS-CEEEEEECS
T ss_pred CeEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEECCC-----CEEEEEECCCCcEEEEEcCCCC-CEEEEEEcC
Confidence 4577788877766443211 11111222222 56777777754 4688899887753221111111 11122222
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++..++.|+.+ ..+..||..+.+-... ++........+.+ ++.+++.|+.++ .+..||..+.+...
T Consensus 118 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 118 QSNLIVSGSFD-----ESVRIWDVKTGKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWDTASGQCLK 185 (312)
T ss_dssp SSSEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceee
Confidence 56677777755 3588899887653222 2211111222222 567777887644 58889988776433
Q ss_pred ccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEc-cCCCCCCc-ceEE-EEECCEEEEEeCCCC
Q psy10286 633 VKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI-ASMNVMRS-RVAL-VANMGKLWAIGGYDG 707 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~-~~~~-~~~~~~l~v~GG~~~ 707 (748)
.-.... ......+.+ +++.++.|+.+ ..+.+||..+.+-... ........ .... ...++.+++.||.++
T Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 259 (312)
T 4ery_A 186 TLIDDD-NPPVSFVKFSPNGKYILAATLD-----NTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN 259 (312)
T ss_dssp EECCSS-CCCEEEEEECTTSSEEEEEETT-----TEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS
T ss_pred EEeccC-CCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC
Confidence 211111 111222222 56667777654 4788999887653322 11111111 1122 223677777877543
Q ss_pred CCCCCeEEEEeCCCCc
Q psy10286 708 VSNLPTVEVYDPSTDS 723 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~ 723 (748)
.+.+||..+++
T Consensus 260 -----~i~vwd~~~~~ 270 (312)
T 4ery_A 260 -----LVYIWNLQTKE 270 (312)
T ss_dssp -----CEEEEETTTCC
T ss_pred -----EEEEEECCCch
Confidence 58889987764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.06 Score=62.78 Aligned_cols=233 Identities=10% Similarity=0.219 Sum_probs=129.7
Q ss_pred eEeecCCCCceeecccc------cc-cc---eEEe-cccc-cccCCCccceEEEEeCCCCceEEccCCC--cc-cceeEE
Q psy10286 440 VEVFDPLVGRWQMAEEE------TL-SN---AVIS-TKSC-LTKAGDSLSTVEVFDPLVGRWQMAEAMS--ML-RSRVGV 504 (748)
Q Consensus 440 ~~~y~~~~~~W~~~~~~------~~-~~---~~~~-~~~~-~~~~g~~~~~~~~yd~~~~~W~~~~~~~--~~-r~~~~~ 504 (748)
+.+||+.++++...... .+ .. +++. ..+. +..+ ....-+.+||+.++++....... .+ ..-.++
T Consensus 379 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWig-t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 379 LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIG-THAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEE-ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEE-eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 77889888888665321 11 11 2222 2333 3332 22246899999999887765311 11 111222
Q ss_pred EEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC--C--CCcc-eeEEEEE-CCEEEEEeCCCCCCCCceEEEEe
Q psy10286 505 AVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM--C--FKRS-AVGAAAL-NDKLYVCGGYDGVSSLNTVECYE 577 (748)
Q Consensus 505 ~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~--~--~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd 577 (748)
... +|.||+-.. ..+.+||+.+++|+..... + .+.. -.+.... +|.||+... ..+.+||
T Consensus 458 ~~d~~g~lwigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------~Gl~~~~ 523 (795)
T 4a2l_A 458 LPDGEGNLWLGTL-------SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------EGLSVFK 523 (795)
T ss_dssp EECSSSCEEEEES-------SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------SCEEEEE
T ss_pred EECCCCCEEEEec-------CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------CceEEEe
Confidence 222 567777432 2489999999999887533 1 1111 1222222 678887543 3588999
Q ss_pred CCCCeEEEccCC---C-CCC-cceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEE
Q psy10286 578 PDKDQWRIVKSM---Q-KHR-SAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAAL 648 (748)
Q Consensus 578 ~~~~~W~~~~~~---~-~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~ 648 (748)
+.++++ ..... + .+- .-.+++. .+|.|++-.. ..+.+||+.+++++... .+|... -.+++.-
T Consensus 524 ~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d 594 (795)
T 4a2l_A 524 QEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILED 594 (795)
T ss_dssp EETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEEC
T ss_pred CCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEEC
Confidence 999888 43211 1 111 1122222 2577777432 24899999999988764 233322 2233322
Q ss_pred -CCEEEEEeccCCCccccEEEEEeCCCCcEEEcc---CCCCCCcce-EEEEE-CCEEEEEeC
Q psy10286 649 -NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA---SMNVMRSRV-ALVAN-MGKLWAIGG 704 (748)
Q Consensus 649 -~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~-~~~~~-~~~l~v~GG 704 (748)
+|.||+.+. +.+.+||+++.++.... .++...+.. +++.. +|.||+ ||
T Consensus 595 ~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~ 648 (795)
T 4a2l_A 595 SFGRLWLSTN-------RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYF-GG 648 (795)
T ss_dssp TTSCEEEEET-------TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEE-EE
T ss_pred CCCCEEEEcC-------CceEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEE-ec
Confidence 577888763 46889999999988764 244444332 33333 566665 44
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.069 Score=55.30 Aligned_cols=284 Identities=9% Similarity=0.012 Sum_probs=133.2
Q ss_pred EEEEEcCccCCCCCCcceEeecCCCCceeecccccc---cceEEeccc-ccccCCC---ccce--EEEEeCCCCceEEcc
Q psy10286 423 HIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL---SNAVISTKS-CLTKAGD---SLST--VEVFDPLVGRWQMAE 493 (748)
Q Consensus 423 ~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~---~~~~~~~~~-~~~~~g~---~~~~--~~~yd~~~~~W~~~~ 493 (748)
..+.+|.+......--.++.+|+.++++..+..... ....+..++ .++..+. .... +|.+|..+++.+.+.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 445567765433333456667888888776543211 111333333 2333322 1123 456666667777665
Q ss_pred CCCcc-cceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe-EEEc-------cCCCC-----CcceeEEEEE-CC-E
Q psy10286 494 AMSML-RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV-WNKV-------SPMCF-----KRSAVGAAAL-ND-K 557 (748)
Q Consensus 494 ~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~-------~~~~~-----~r~~~~~~~~-~~-~ 557 (748)
..+.. ..-..++.-++.+|+.+.. ...+..|+..++. ...+ ..-+. ....|+++.. +| .
T Consensus 94 ~~~~~~~~p~~~~~dg~~l~~~~~~-----~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 94 TQKTMGADPCYLTTNGKNIVTANYS-----GGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEECSSSCEEEEEECSSEEEEEETT-----TTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred EeccCCCCcEEEEECCCEEEEEECC-----CCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 44322 2222333333456665432 2467788875432 1110 00011 1112444443 55 4
Q ss_pred EEEEeCCCCCCCCceEEEEeCCCCe-------EEEc-----cCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEE
Q psy10286 558 LYVCGGYDGVSSLNTVECYEPDKDQ-------WRIV-----KSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERY 623 (748)
Q Consensus 558 iyv~GG~~~~~~~~~~~~yd~~~~~-------W~~~-----~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~y 623 (748)
+|+.+.. .+.+..|+..... .... ...+....-..++.. ++ .+|+.+.. .+.+..|
T Consensus 169 l~~~~~~-----~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~ 238 (361)
T 3scy_A 169 LLADDLG-----TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----GGTVIAF 238 (361)
T ss_dssp EEEEETT-----TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----TCEEEEE
T ss_pred EEEEeCC-----CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----CCeEEEE
Confidence 7776532 2466777655433 2111 111111111223332 44 57776633 2468888
Q ss_pred ECCCCcEEEccC---CCCCCcceeEEEE--CC-EEEEEeccCCCccccEEEEEeC--CCCcEEEccCCCCCCcceEEEEE
Q psy10286 624 DPKTDEWTSVKP---MLTKRCRLGVAAL--NN-KIYVCGGYDGAIFLQSVEMYDP--ITDEWKMIASMNVMRSRVALVAN 695 (748)
Q Consensus 624 d~~~~~W~~~~~---~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r~~~~~~~~ 695 (748)
|..++++..+.. .+..........+ ++ .||+.+. .+ .+.+.+|+. .+.+++.+...+....-..++..
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~-~~---~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~s 314 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR-LK---ADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIIT 314 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC-SS---SCEEEEEEECTTTCCEEEEEEEECSSCCCEEEEC
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC-CC---CCEEEEEEEcCCCCcEEEeeEecCCCCCceEEEC
Confidence 888777755542 2322222233333 44 4665543 20 135666554 57777776554432222233333
Q ss_pred -CCE-EEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 696 -MGK-LWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 696 -~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
+++ ||+.+..++ .-.++.+|+++++-+.+.
T Consensus 315 pdg~~l~~~~~~~~---~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 315 PNGKYLLVACRDTN---VIQIFERDQATGLLTDIK 346 (361)
T ss_dssp TTSCEEEEEETTTT---EEEEEEECTTTCCEEECS
T ss_pred CCCCEEEEEECCCC---CEEEEEEECCCCcEeecc
Confidence 455 555543221 123455788888877765
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.15 Score=52.24 Aligned_cols=255 Identities=11% Similarity=0.171 Sum_probs=121.5
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccc---ccccceEEecccccccCCCccceEEEEeCCCCc--eEEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~~ 495 (748)
++.+++.||.+ .++..||..+++-...-. ..+....+..++.....|..-..+..||..+.. ......+
T Consensus 66 d~~~l~s~s~D------g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~ 139 (340)
T 1got_B 66 DSRLLLSASQD------GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSREL 139 (340)
T ss_dssp TSSEEEEEETT------TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEE
T ss_pred CCCEEEEEeCC------CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEe
Confidence 34556666643 257777766554322111 111111222333222223333567778876643 1111111
Q ss_pred Cccc-ceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCce
Q psy10286 496 SMLR-SRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 496 ~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 572 (748)
.... .-.++... ++. ++.|+.+ ..+..||..+.+-...-.-... .-.+++.. ++.+++.||.+ ..
T Consensus 140 ~~h~~~v~~~~~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sg~~d-----~~ 207 (340)
T 1got_B 140 AGHTGYLSCCRFLDDNQ-IVTSSGD-----TTCALWDIETGQQTTTFTGHTG-DVMSLSLAPDTRLFVSGACD-----AS 207 (340)
T ss_dssp ECCSSCEEEEEEEETTE-EEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETT-----SC
T ss_pred cCCCccEEEEEECCCCc-EEEEECC-----CcEEEEECCCCcEEEEEcCCCC-ceEEEEECCCCCEEEEEeCC-----Cc
Confidence 1111 11122222 555 4555533 4688899988764332111111 11222222 67788888865 46
Q ss_pred EEEEeCCCCeEEEccCCCCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--
Q psy10286 573 VECYEPDKDQWRIVKSMQKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-- 648 (748)
Q Consensus 573 ~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-- 648 (748)
+..||..+..-... +...... .+++.. ++..++.|+.++ .+..||..+.+-...-..+........+.+
T Consensus 208 v~~wd~~~~~~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~ 280 (340)
T 1got_B 208 AKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQELMTYSHDNIICGITSVSFSK 280 (340)
T ss_dssp EEEEETTTCSEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCTTCCSCEEEEEECT
T ss_pred EEEEECCCCeeEEE--EcCCcCCEEEEEEcCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEccCCcccceEEEEECC
Confidence 78888877653221 1111111 122222 667777887654 588899887653322111111122233333
Q ss_pred CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCC
Q psy10286 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDG 707 (748)
Q Consensus 649 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~ 707 (748)
++++++.|+.+ ..+.+||..+..= +..+........++.+ +++.++.||.++
T Consensus 281 ~g~~l~~g~~d-----~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 334 (340)
T 1got_B 281 SGRLLLAGYDD-----FNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred CCCEEEEECCC-----CeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCc
Confidence 67788888754 4688999766432 2222111112222222 567777887653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.081 Score=53.84 Aligned_cols=279 Identities=11% Similarity=0.072 Sum_probs=141.6
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccccc--cceEEeccc-ccccCCCccceEEEEeCCCCce--EEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL--SNAVISTKS-CLTKAGDSLSTVEVFDPLVGRW--QMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~--~~~~~~~~~-~~~~~g~~~~~~~~yd~~~~~W--~~~~~~ 495 (748)
.+.+|+.++.. ..+..||+.+++......... ....+..++ .++..+.....++.+|+.+++. ..+..-
T Consensus 9 ~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 9 SNFGIVVEQHL------RRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp CCEEEEEEGGG------TEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred CCEEEEEecCC------CeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 35677776542 368899998888755432211 122333333 3554444456899999988874 222222
Q ss_pred CcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCce-
Q psy10286 496 SMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNT- 572 (748)
Q Consensus 496 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~- 572 (748)
..++...+...-++.+| .+... .....+++||+.+++....-+ .....++++.. +| .+|+.+..+ ..
T Consensus 83 ~~~~~~~~~s~dg~~l~-~~~~~--~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~-----~~~ 152 (331)
T 3u4y_A 83 QSSMADVDITPDDQFAV-TVTGL--NHPFNMQSYSFLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSS-----ANT 152 (331)
T ss_dssp SSCCCCEEECTTSSEEE-ECCCS--SSSCEEEEEETTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETT-----TTE
T ss_pred CCCccceEECCCCCEEE-EecCC--CCcccEEEEECCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCC-----Cce
Confidence 22222122211244566 33321 112379999999887654322 22223444444 44 588776532 23
Q ss_pred EEEEeCCCCe--EEE-ccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECCCCcE-EEccCCCCCCcceeEE
Q psy10286 573 VECYEPDKDQ--WRI-VKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPKTDEW-TSVKPMLTKRCRLGVA 646 (748)
Q Consensus 573 ~~~yd~~~~~--W~~-~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~ 646 (748)
+..|+...+. ... ...++....-..++.. ++ .+|+.+.. .+.+..||+.+.+. ..+..++......+++
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~ 227 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAVGTNNLPGTIV 227 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEEECSSCCCCEE
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeeccCCCCCceEE
Confidence 5666654321 111 1111111112233332 44 57777654 24799999987764 1122222222222333
Q ss_pred EE-CCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCC-----CCcce---EEEE-EC-CEEEEEeCCCCCCCCCeE
Q psy10286 647 AL-NNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV-----MRSRV---ALVA-NM-GKLWAIGGYDGVSNLPTV 714 (748)
Q Consensus 647 ~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-----~r~~~---~~~~-~~-~~l~v~GG~~~~~~~~~v 714 (748)
.. +++ +|+..+. .+.+.++|+.+.+...+...+. ++... .++. -+ ..||+.++. ...+
T Consensus 228 ~spdg~~l~v~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v 297 (331)
T 3u4y_A 228 VSRDGSTVYVLTES-----TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI-----SREL 297 (331)
T ss_dssp ECTTSSEEEEECSS-----EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT-----TTEE
T ss_pred ECCCCCEEEEEEcC-----CCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC-----CCcE
Confidence 33 444 6666532 2568999999988755432221 12111 1222 23 456666542 2479
Q ss_pred EEEeCCCCceEecCCC
Q psy10286 715 EVYDPSTDSWAFVAPM 730 (748)
Q Consensus 715 ~~yd~~~~~W~~~~~~ 730 (748)
.+||..+..=..+..+
T Consensus 298 ~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 298 KVFTISGKVVGYVAGI 313 (331)
T ss_dssp EEEETTSCEEEECTTC
T ss_pred EEEEecCCcccceecc
Confidence 9999988765555544
|
| >3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00057 Score=63.20 Aligned_cols=98 Identities=14% Similarity=0.273 Sum_probs=73.2
Q ss_pred cEEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
=|+|.|+|+.|...+..|.... .+|.+||.+...-. . + .....++-+ +
T Consensus 13 ~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~------~----------------------~--~De~geyFI-D 61 (202)
T 3drx_A 13 WVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLD------S----------------------D--KDETGAYLI-D 61 (202)
T ss_dssp EEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----------------------------------BCTTCCEEE-C
T ss_pred EEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccC------c----------------------c--cCCCccEEe-c
Confidence 3677899999999999997653 37888886532100 0 0 001122222 5
Q ss_pred CCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhHHHHHHHHhhh
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKVADACADFLKK 204 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l~~~c~~~l~~ 204 (748)
-++..|+.+|+|+-+|.+.++.+ ....++.-|++|+|+.|.+.|.+.|.+
T Consensus 62 RDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i~e 112 (202)
T 3drx_A 62 RDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE 112 (202)
T ss_dssp SCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 68999999999999999987665 457899999999999999999999865
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.011 Score=61.72 Aligned_cols=231 Identities=14% Similarity=0.172 Sum_probs=112.0
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCe-EEEccCCCCCcceeEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRV-WNKVSPMCFKRSAVGA 551 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~r~~~~~ 551 (748)
.-..+..||..++.|..+..+.........+.. ++..++.|+.+ ..+..||..+.. |.....+........+
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~v~~ 105 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD-----RNAYVYEKRPDGTWKQTLVLLRLNRAATF 105 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT-----SSEEEC------CCCCEEECCCCSSCEEE
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCCceeeeeEecccCCceEE
Confidence 345678888888888877766543333333333 56677777754 357888888766 4433222222222222
Q ss_pred EEE--CCEEEEEeCCCCCCCCceEEEEeCCCCe-EEEccCCCC-CCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEEC
Q psy10286 552 AAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVKSMQK-HRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDP 625 (748)
Q Consensus 552 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~-~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~ 625 (748)
+.+ +++.++.|+.+ ..+..||..+.+ |.....+.. .... .+++.. ++..++.|+.++ .+..||.
T Consensus 106 ~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~ 175 (377)
T 3dwl_C 106 VRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR-----KAYVLSA 175 (377)
T ss_dssp EECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS-----CEEEEEE
T ss_pred EEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC-----EEEEEEE
Confidence 222 56677777754 357778877664 333322322 1111 222222 567777777643 4777876
Q ss_pred CCCc----------------EEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcE--EEccCCCC
Q psy10286 626 KTDE----------------WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEW--KMIASMNV 685 (748)
Q Consensus 626 ~~~~----------------W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~ 685 (748)
.+.. -..+..+ ........+.+ +++.++.|+.+ ..+.+||..+.+- ..+..+..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~ 249 (377)
T 3dwl_C 176 YVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHD-----SSVTIAYPSAPEQPPRALITVKL 249 (377)
T ss_dssp CCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETT-----TEEC-CEECSTTSCEEECCCEEC
T ss_pred EecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCC-----CcEEEEECCCCCCcceeeEeecC
Confidence 5332 1222222 11111223333 56777777754 3677788766542 21222222
Q ss_pred CCcce-EE-EEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCC
Q psy10286 686 MRSRV-AL-VANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732 (748)
Q Consensus 686 ~r~~~-~~-~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~ 732 (748)
..... ++ ..-++++++.|+. ..+.+|+.....|+....+..
T Consensus 250 ~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~ 292 (377)
T 3dwl_C 250 SQLPLRSLLWANESAIVAAGYN------YSPILLQGNESGWAHTRDLDA 292 (377)
T ss_dssp SSSCEEEEEEEETTEEEEEESS------SSEEEECCCC---CCSBCCCS
T ss_pred CCCceEEEEEcCCCCEEEEEcC------CcEEEEEeCCCceEEEeeecc
Confidence 22212 22 2337887777652 245688888777877666543
|
| >2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00019 Score=60.06 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=51.5
Q ss_pred EeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhc
Q psy10286 173 TIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFL 252 (748)
Q Consensus 173 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~ 252 (748)
.++.+|...++..|+.|++++|.+.|..|+.+ ||.++....+|+
T Consensus 7 ~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~------------------------------------nF~~v~~~~eFl 50 (105)
T 2eqx_A 7 GVQVGNCLQVMWLADRHSDPELYTAAKHCAKT------------------------------------HLAQLQNTEEFL 50 (105)
T ss_dssp CCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------------------TCHHHHTSHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------------------------------------HHHHHHhcccHh
Confidence 35566667777777777777777777666655 566676666666
Q ss_pred CcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHH-------hhhhhccCccc
Q psy10286 253 QMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQ-------YFHEVSMSDEF 310 (748)
Q Consensus 253 ~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~-------~~~~l~~~~~f 310 (748)
.|+. +...+.|.. +.....++++++++|+.+ |+.++++++++
T Consensus 51 ~L~~--~~L~~lL~s--------------dv~~E~~vf~av~~Wv~~d~~~R~~~~~~Ll~~VR~ 99 (105)
T 2eqx_A 51 HLPH--RLLTDIISD--------------GVPCSQNPTEAIEAWINFNKEEREAFAESLRTSLKE 99 (105)
T ss_dssp HSCH--HHHHHHHHT--------------CEETTSCHHHHHHHHHHTTHHHHHHHHHHHHHHCCE
T ss_pred hCCH--HHHHHHHcC--------------CCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 5541 112222321 122445799999999974 44555555443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.31 Score=52.23 Aligned_cols=267 Identities=13% Similarity=0.147 Sum_probs=136.8
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeec-cc--ccccceEEecccccccCCCccceEEEEeCCCCceEEc-cCCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EE--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMA-EAMS 496 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~-~~~~ 496 (748)
++..++.|+.+ .++..||..+++-... .. ..+....+..++ ....|..-..+..+|..+++-... ....
T Consensus 131 ~~~~l~sgs~d------g~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~ 203 (464)
T 3v7d_B 131 EDNYVITGADD------KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 203 (464)
T ss_dssp ETTEEEEEETT------SCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCEEEEEcCC------CcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCC
Confidence 34456666543 2578888766553221 11 111111222233 222333345688889887754322 1111
Q ss_pred cccceeEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc---------------------CCCCCcceeEEE
Q psy10286 497 MLRSRVGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS---------------------PMCFKRSAVGAA 552 (748)
Q Consensus 497 ~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~---------------------~~~~~r~~~~~~ 552 (748)
.+- .++... ++..++.|+.+ ..+..||..+..-.... .+........+.
T Consensus 204 ~~v--~~l~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (464)
T 3v7d_B 204 STV--RCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276 (464)
T ss_dssp SCE--EEEEEEESSSCEEEEEEETT-----SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred Ccc--EEEEEecCCCCCEEEEEcCC-----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence 111 222222 45777777754 35777777665321100 000011111222
Q ss_pred EECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 553 ALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 553 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
..++..++.|+.+ ..+..||..+.+-...-.... ..-.+++.. ++..++.|+.++ .+..||..+.+-.
T Consensus 277 ~~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 277 SGHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHT-DRIYSTIYDHERKRCISASMDT-----TIRIWDLENGELM 345 (464)
T ss_dssp EEETTEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEE
T ss_pred cCCCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCC-CCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCcEE
Confidence 3455666777754 368889988766432211111 111222222 556677777643 5889998876533
Q ss_pred EccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCC
Q psy10286 632 SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNL 711 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~ 711 (748)
. .+...........+++..++.|+.+ ..+.+||..+..-..... ........+...++++++.|+ +
T Consensus 346 ~--~~~~h~~~v~~~~~~~~~l~s~s~d-----g~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d----- 411 (464)
T 3v7d_B 346 Y--TLQGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E----- 411 (464)
T ss_dssp E--EECCCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-T-----
T ss_pred E--EEeCCCCcEEEEEEcCCEEEEEeCC-----CcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-C-----
Confidence 2 2222233344555667777888764 368899988765322211 112223344455777777776 2
Q ss_pred CeEEEEeCCCCceEe
Q psy10286 712 PTVEVYDPSTDSWAF 726 (748)
Q Consensus 712 ~~v~~yd~~~~~W~~ 726 (748)
..+.+||..+++--.
T Consensus 412 g~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 412 NQFNIYNLRSGKLVH 426 (464)
T ss_dssp TEEEEEETTTCCEEE
T ss_pred CeEEEEECCCCcEEe
Confidence 369999998887543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=97.02 E-value=0.16 Score=52.31 Aligned_cols=233 Identities=11% Similarity=0.081 Sum_probs=112.6
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc-----cccceEEecccccccCCCccceEEEEeCCCCceEEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE-----TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~ 495 (748)
++.++++|+.+ ..+..||..++.|...... .+....+..++.....+..-..+..||..++++.....+
T Consensus 19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 92 (372)
T 1k8k_C 19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI 92 (372)
T ss_dssp TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe
Confidence 34566666642 3688888888865443321 111222333333222233335688889888877654333
Q ss_pred Cccccee-EEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCe-EEEccCC--CCCcceeEEEEE-CCEEEEEeCCCCCCC
Q psy10286 496 SMLRSRV-GVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRV-WNKVSPM--CFKRSAVGAAAL-NDKLYVCGGYDGVSS 569 (748)
Q Consensus 496 ~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~--~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 569 (748)
....... +++.. ++..++.|+.++ .+..||..+.. |...... +....-.+++.. ++..++.|+.+
T Consensus 93 ~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---- 163 (372)
T 1k8k_C 93 LRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD---- 163 (372)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT----
T ss_pred ecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC----
Confidence 2222222 22322 566777777542 35555554432 3222211 112222233332 66777777754
Q ss_pred CceEEEEeCCCC----------------eEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 570 LNTVECYEPDKD----------------QWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 570 ~~~~~~yd~~~~----------------~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
..+..||.... .-..+..+.........+.+ ++..++.|+.+ ..+..||..+.+-.
T Consensus 164 -g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 164 -FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMAV 237 (372)
T ss_dssp -SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTEE
T ss_pred -CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcee
Confidence 35777885311 11111112111111222222 55666677654 36888998766533
Q ss_pred EccCCCCCCcc-eeEE-EECCEEEEEeccCCCccccEEEEEeCCC--CcEEEccC
Q psy10286 632 SVKPMLTKRCR-LGVA-ALNNKIYVCGGYDGAIFLQSVEMYDPIT--DEWKMIAS 682 (748)
Q Consensus 632 ~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 682 (748)
.. +...... .+++ .-++.+++.| .+ ..+.+||..+ ++|..+..
T Consensus 238 ~~--~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~i~~~~~~~~~~~~~~~ 284 (372)
T 1k8k_C 238 AT--LASETLPLLAVTFITESSLVAAG-HD-----CFPVLFTYDSAAGKLSFGGR 284 (372)
T ss_dssp EE--EECSSCCEEEEEEEETTEEEEEE-TT-----SSCEEEEEETTTTEEEECCC
T ss_pred EE--EccCCCCeEEEEEecCCCEEEEE-eC-----CeEEEEEccCcCceEEEeec
Confidence 22 1111111 2222 2367766665 33 3456677766 88877643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.13 Score=51.48 Aligned_cols=191 Identities=13% Similarity=0.204 Sum_probs=93.0
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
.++..++.|+.+ ..+..||.....+.... -..+.........++..++.|+.+ ..+..||..... ...
T Consensus 112 ~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~-~~~ 179 (313)
T 3odt_A 112 FQDGVVISGSWD-----KTAKVWKEGSLVYNLQA-HNASVWDAKVVSFSENKFLTASAD-----KTIKLWQNDKVI-KTF 179 (313)
T ss_dssp EETTEEEEEETT-----SEEEEEETTEEEEEEEC-CSSCEEEEEEEETTTTEEEEEETT-----SCEEEEETTEEE-EEE
T ss_pred ecCCEEEEEeCC-----CCEEEEcCCcEEEeccc-CCCceeEEEEccCCCCEEEEEECC-----CCEEEEecCceE-EEE
Confidence 356666777644 35778883332222221 111111111122256667777754 357778833222 122
Q ss_pred cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccc
Q psy10286 587 KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFL 664 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~ 664 (748)
...........+..-++. ++.|+.+ ..+..||..+.+-... +.........+.+ +++ ++.||.+
T Consensus 180 ~~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-l~~~~~d----- 245 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGDVLRT--YEGHESFVYCIKLLPNGD-IVSCGED----- 245 (313)
T ss_dssp CSSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSC-EEEEETT-----
T ss_pred eccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchhhhhh--hhcCCceEEEEEEecCCC-EEEEecC-----
Confidence 111111222222233667 6667664 3688999887653221 1111122222222 444 5566643
Q ss_pred cEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCC
Q psy10286 665 QSVEMYDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730 (748)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (748)
..+.+||..+.+....-..+... -.++.. -+++ ++.||.+ ..+.+||..++.|.....+
T Consensus 246 g~v~iwd~~~~~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~d-----g~i~iw~~~~~~~~~~~~~ 305 (313)
T 3odt_A 246 RTVRIWSKENGSLKQVITLPAIS-IWSVDCMSNGD-IIVGSSD-----NLVRIFSQEKSRWASEDEI 305 (313)
T ss_dssp SEEEEECTTTCCEEEEEECSSSC-EEEEEECTTSC-EEEEETT-----SCEEEEESCGGGCCC----
T ss_pred CEEEEEECCCCceeEEEeccCce-EEEEEEccCCC-EEEEeCC-----CcEEEEeCCCCceeehhhh
Confidence 47899999887654432222221 122222 2566 4556644 3699999999887655443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.032 Score=59.71 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=116.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
..+..||..+.+-... +........+...++.+++.|+.+ ..+..||..+++-... +........+...++
T Consensus 153 g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~~--~~~h~~~v~~l~~~~ 223 (435)
T 1p22_A 153 NTIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEMLNT--LIHHCEAVLHLRFNN 223 (435)
T ss_dssp SCEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCEEEE--ECCCCSCEEEEECCT
T ss_pred CeEEEEeCCCCeEEEE--EcCCCCcEEEEEECCCEEEEEcCC-----CeEEEEECCCCcEEEE--EcCCCCcEEEEEEcC
Confidence 4678888877654322 111122223333377888888855 3588899888764332 111222233344455
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEE-ccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccC
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRI-VKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP 635 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 635 (748)
..++.||.+ ..+..||..+..-.. ...+........++..++..++.|+.+ ..+..||..+.+-...
T Consensus 224 ~~l~s~s~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~-- 291 (435)
T 1p22_A 224 GMMVTCSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD-----RTIKVWNTSTCEFVRT-- 291 (435)
T ss_dssp TEEEEEETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETT-----SEEEEEETTTCCEEEE--
T ss_pred CEEEEeeCC-----CcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCcCcEEEE--
Confidence 667777754 467888887654211 111111122223333466666677664 3688999887653322
Q ss_pred CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEE
Q psy10286 636 MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVE 715 (748)
Q Consensus 636 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~ 715 (748)
+........+...++..++.|+.+ ..+.+||..+.+-.. .+........++..++..++.|+.++ .|.
T Consensus 292 ~~~~~~~v~~~~~~~~~l~~g~~d-----g~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~l~sg~~dg-----~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACLR--VLEGHEELVRCIRFDNKRIVSGAYDG-----KIK 359 (435)
T ss_dssp EECCSSCEEEEEEETTEEEEEETT-----SCEEEEETTTCCEEE--EECCCSSCEEEEECCSSEEEEEETTS-----CEE
T ss_pred EcCCCCcEEEEEeCCCEEEEEeCC-----CeEEEEECCCCCEEE--EEeCCcCcEEEEEecCCEEEEEeCCC-----cEE
Confidence 222222334444567777888754 368899988764322 22222223344445888888888553 577
Q ss_pred EEeCCC
Q psy10286 716 VYDPST 721 (748)
Q Consensus 716 ~yd~~~ 721 (748)
+||..+
T Consensus 360 vwd~~~ 365 (435)
T 1p22_A 360 VWDLVA 365 (435)
T ss_dssp EEEHHH
T ss_pred EEECCC
Confidence 787644
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.32 Score=52.17 Aligned_cols=185 Identities=14% Similarity=0.152 Sum_probs=100.6
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
.++..++.|+.+ ..+..||..+.+-...-..... .-.+++.. ++..++.|+.+ ..+..||..+.+-..
T Consensus 278 ~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~~~~ 346 (464)
T 3v7d_B 278 GHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTD-RIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMY 346 (464)
T ss_dssp EETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCCCEEEEEeCC-----CeEEEEECCCCcEEEEecCCCC-CEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCcEEE
Confidence 355566667654 3588999987764332111111 12223332 56677777754 368899988765322
Q ss_pred ccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCcccc
Q psy10286 586 VKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQ 665 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~ 665 (748)
.+......-.....++..++.|+.++ .+..||+.+..-..... ........+...++.+++.|+ + .
T Consensus 347 --~~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-d-----g 412 (464)
T 3v7d_B 347 --TLQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E-----N 412 (464)
T ss_dssp --EECCCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-T-----T
T ss_pred --EEeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-C-----C
Confidence 22222223344455677777777643 68899988765322211 112223334455777777776 2 4
Q ss_pred EEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 666 SVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 666 ~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.+.+||..+.+-...-..+....-.++...++.+++.|+.++. .-++++|.
T Consensus 413 ~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~---~~i~~ldf 463 (464)
T 3v7d_B 413 QFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ---SFLEILDF 463 (464)
T ss_dssp EEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTE---EEEEEEEC
T ss_pred eEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCe---EEEEEeec
Confidence 7999999988755432222222223333446666666654432 23555553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.072 Score=54.84 Aligned_cols=275 Identities=15% Similarity=0.076 Sum_probs=129.7
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeec-cc--ccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EE--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSM 497 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~ 497 (748)
++..++.|+.++ .+.+||..++.-... .. ..+....+..++.....+..-..+..||..+++....-..+.
T Consensus 43 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 116 (369)
T 3zwl_B 43 EGDLLFSCSKDS------SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPV 116 (369)
T ss_dssp TSCEEEEEESSS------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSS
T ss_pred CCCEEEEEeCCC------EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC
Confidence 445566666432 477888766554321 11 111122223333222222333568899988876544332222
Q ss_pred ccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCe----EEEccCCCC-------CcceeEEEEE--CCEEEEEeC
Q psy10286 498 LRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRV----WNKVSPMCF-------KRSAVGAAAL--NDKLYVCGG 563 (748)
Q Consensus 498 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~----W~~~~~~~~-------~r~~~~~~~~--~~~iyv~GG 563 (748)
+ -.+++.. ++..++.|+.+.......+..||..+.. +.....-+. ......++.+ +++.++.|+
T Consensus 117 ~--v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (369)
T 3zwl_B 117 P--VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH 194 (369)
T ss_dssp C--EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE
T ss_pred C--eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc
Confidence 1 1222222 5566666654422233467777755432 222111110 1002222222 566677776
Q ss_pred CCCCCCCceEEEEeCCC-CeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCc
Q psy10286 564 YDGVSSLNTVECYEPDK-DQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC 641 (748)
Q Consensus 564 ~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 641 (748)
.+ ..+..||..+ ..-...-.... ..-.+++.. ++..++.|+.+ ..+..||..+.+....-. ....
T Consensus 195 ~d-----g~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~--~~~~ 261 (369)
T 3zwl_B 195 KD-----GKISKYDVSNNYEYVDSIDLHE-KSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKKYE--TDCP 261 (369)
T ss_dssp TT-----SEEEEEETTTTTEEEEEEECCS-SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE--CSSC
T ss_pred CC-----CEEEEEECCCCcEeEEEEecCC-CceeEEEECCCCCEEEEecCC-----ceEEEEECCCCceeeeec--CCCC
Confidence 54 4688999887 33222111111 111222222 56666777654 368899988766443322 1111
Q ss_pred ceeEEE-ECCEEEEEeccCCCc---------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCC
Q psy10286 642 RLGVAA-LNNKIYVCGGYDGAI---------FLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVS 709 (748)
Q Consensus 642 ~~~~~~-~~~~i~v~GG~~~~~---------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~ 709 (748)
...++. -++..+++|+.++.. ....+..||..+.+=.. .+.........+.+ ++++++.||.++
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~s~~~dg-- 337 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG--RVQGHFGPLNTVAISPQGTSYASGGEDG-- 337 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE--EEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh--heecccCcEEEEEECCCCCEEEEEcCCC--
Confidence 112222 245556666543321 11267888877654322 11111222233333 677888887543
Q ss_pred CCCeEEEEeCCCCc
Q psy10286 710 NLPTVEVYDPSTDS 723 (748)
Q Consensus 710 ~~~~v~~yd~~~~~ 723 (748)
.+.+||.+++.
T Consensus 338 ---~v~iw~~~~~~ 348 (369)
T 3zwl_B 338 ---FIRLHHFEKSY 348 (369)
T ss_dssp ---EEEEEEECHHH
T ss_pred ---eEEEEECcccc
Confidence 58888876654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.1 Score=54.95 Aligned_cols=223 Identities=15% Similarity=0.161 Sum_probs=116.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEEC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALN 555 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 555 (748)
..+..||..+++............-.+++.. ++..++.|+.+ ..+..||..+.+....-. .......+...+
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~ 185 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN-----GLVDIYDVESQTKLRTMA--GHQARVGCLSWN 185 (401)
T ss_dssp TEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEEEC--CCSSCEEEEEEE
T ss_pred CeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC-----CeEEEEECcCCeEEEEec--CCCCceEEEEEC
Confidence 4688999998887665444322222333333 66677777754 368889988776433221 112222334446
Q ss_pred CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 556 DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+.+++.|+.+ ..+..||.....-... .+...... .+++.. ++..++.|+.++ .+..||..+.+-...
T Consensus 186 ~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~ 254 (401)
T 4aez_A 186 RHVLSSGSRS-----GAIHHHDVRIANHQIG-TLQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDARSSIPKFT 254 (401)
T ss_dssp TTEEEEEETT-----SEEEEEETTSSSCEEE-EEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCSSEEEE
T ss_pred CCEEEEEcCC-----CCEEEEecccCcceee-EEcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccCCCCCccEE
Confidence 6777777754 4788888874321111 11111111 222222 667778887643 588999887543321
Q ss_pred cCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CC-EEEEEeCCCCCC
Q psy10286 634 KPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MG-KLWAIGGYDGVS 709 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~ 709 (748)
-. .....-.+++.. ++.+++.||-. .-..+.+||..+.+-...-.. ...-.+++.. ++ .+++.+|..+
T Consensus 255 ~~-~~~~~v~~~~~~p~~~~ll~~~~gs---~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~d-- 326 (401)
T 4aez_A 255 KT-NHNAAVKAVAWCPWQSNLLATGGGT---MDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPD-- 326 (401)
T ss_dssp EC-CCSSCCCEEEECTTSTTEEEEECCT---TTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTT--
T ss_pred ec-CCcceEEEEEECCCCCCEEEEecCC---CCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCC--
Confidence 11 111111222222 45677777511 124789999887654332111 1111222222 34 4444445332
Q ss_pred CCCeEEEEeCCCCceEec
Q psy10286 710 NLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 710 ~~~~v~~yd~~~~~W~~~ 727 (748)
..+.+||..++.....
T Consensus 327 --g~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 327 --NNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp --CEEEEEEEETTEEEEE
T ss_pred --CcEEEEecCCccceeE
Confidence 3688888887766554
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.063 Score=52.85 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=100.6
Q ss_pred CCEEEE-EccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYA-FGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv-~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++.+|+ ..+. ...+.+||+.+.......... ...-++++.. +|++|+..+ + ..+.+||+.+.....
T Consensus 34 ~g~l~v~~~~~-----~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~-~-----~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 34 AGNVYVTSEGM-----YGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGTVYVTDF-N-----NRVVTLAAGSNNQTV 101 (270)
T ss_dssp TCCEEEEECSS-----SCEEEEECC-----EECCCCS-CCSCCCEEECTTCCEEEEET-T-----TEEEEECTTCSCCEE
T ss_pred CCCEEEEccCC-----CCcEEEecCCCcccceEeeCC-cCCcceeEECCCCCEEEEcC-C-----CEEEEEeCCCceEee
Confidence 567888 4332 246888998876654433211 1122334443 678998765 2 478999998876544
Q ss_pred ccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCcc
Q psy10286 586 VKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIF 663 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~ 663 (748)
..... ...-.+++.. ++.+|+.... ...+.+||..+.......... ...-.+++.- ++++|+....
T Consensus 102 ~~~~~-~~~p~~i~~~~~g~l~v~~~~-----~~~i~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~----- 169 (270)
T 1rwi_B 102 LPFDG-LNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTG-LNDPDGVAVDNSGNVYVTDTD----- 169 (270)
T ss_dssp CCCCS-CSSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCCSCEECCCCS-CCSCCCEEECTTCCEEEEEGG-----
T ss_pred eecCC-cCCCcceEECCCCCEEEEECC-----CCEEEEEECCCceeEeecccc-CCCceeEEEeCCCCEEEEECC-----
Confidence 42211 1112333433 6788887543 246888987766554332111 1112334433 5788887643
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.+.+.+||+....-........ ..-.+++.. ++.||+....+ ..+.+||+.+..-
T Consensus 170 ~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~~~-----~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 170 NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEHNT-----NQVVKLLAGSTTS 225 (270)
T ss_dssp GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEETTT-----SCEEEECTTCSCC
T ss_pred CCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEECCC-----CcEEEEcCCCCcc
Confidence 2579999988776544321111 112233333 46888876422 3689999877543
|
| >3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00021 Score=61.24 Aligned_cols=40 Identities=18% Similarity=0.439 Sum_probs=35.5
Q ss_pred hhHHHHHHHhhcceeE-EEecccHHHHHHHhhhcCcHHHHH
Q psy10286 220 CRAMEALINFAYSGRV-TIHSQNVQSLMVVASFLQMQKVAD 259 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~-~~~~~~~~~l~~~a~~~~l~~l~~ 259 (748)
...++.+++|+|+|.+ .+..+|+.+++.+|++|+++.|++
T Consensus 75 ~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 75 AEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 4566779999999999 799999999999999999988764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.38 Score=47.58 Aligned_cols=194 Identities=10% Similarity=0.080 Sum_probs=105.1
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC----CCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC----FKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~----~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
++.+|+.+.. ...+.+||+............ ....-.+++.. ++++|+.+... -..+.+||+...
T Consensus 40 ~g~l~v~~~~-----~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~----~~~i~~~d~~g~ 110 (286)
T 1q7f_A 40 QNDIIVADTN-----NHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP----THQIQIYNQYGQ 110 (286)
T ss_dssp TCCEEEEEGG-----GTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG----GCEEEEECTTSC
T ss_pred CCCEEEEECC-----CCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC----CCEEEEECCCCc
Confidence 5678887542 246889998865444433211 11223445542 68999886421 246889996655
Q ss_pred eEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccC
Q psy10286 582 QWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYD 659 (748)
Q Consensus 582 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~ 659 (748)
.-........ ..-.+++.. ++.+|+.... ...+.+||+.......+........-.+++.- ++.+|+.+..
T Consensus 111 ~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~~-----~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~- 183 (286)
T 1q7f_A 111 FVRKFGATIL-QHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR- 183 (286)
T ss_dssp EEEEECTTTC-SCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG-
T ss_pred EEEEecCccC-CCceEEEEeCCCCEEEEECC-----CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC-
Confidence 4443322111 111233332 6788887653 24799999876654444221111112233332 5789987643
Q ss_pred CCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 660 GAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.+.|.+||+.......++.......-.+++.- ++++||....++ ..|.+||+....-.
T Consensus 184 ----~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~----~~i~~~~~~g~~~~ 242 (286)
T 1q7f_A 184 ----AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLIS 242 (286)
T ss_dssp ----GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEE
T ss_pred ----CCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCC----EEEEEECCCCCEEE
Confidence 35799999876655555321111112233332 678888865321 26899997655433
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.047 Score=55.57 Aligned_cols=259 Identities=15% Similarity=0.091 Sum_probs=123.4
Q ss_pred ceEeecCCCCceeeccc--c---cccceEEeccc-ccccCCCccceEEEEeCCCCceEEccCCCcc----cceeEEEEE-
Q psy10286 439 TVEVFDPLVGRWQMAEE--E---TLSNAVISTKS-CLTKAGDSLSTVEVFDPLVGRWQMAEAMSML----RSRVGVAVM- 507 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~--~---~~~~~~~~~~~-~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~~~- 507 (748)
.+..||..+++....-. . ......+..++ .++..+.....++.+|+.+++-...-..+.+ ..-+.++..
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 91 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP 91 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC
Confidence 57788877765533211 1 12222333333 3444434446799999988775432222110 011223332
Q ss_pred C-CEEEEEccCC---CCC---CCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeC
Q psy10286 508 K-NRLYAFGGYN---GSE---RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEP 578 (748)
Q Consensus 508 ~-~~iyv~GG~~---~~~---~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~ 578 (748)
+ +.+|+..+.. ... ....+++||+.+.+....-+... ..++++.. ++ .+|+.+ ..+..||+
T Consensus 92 dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~--------~~i~~~d~ 161 (337)
T 1pby_B 92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR--QITMLAWARDGSKLYGLG--------RDLHVMDP 161 (337)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS--SCCCEEECTTSSCEEEES--------SSEEEEET
T ss_pred CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC--CcceeEECCCCCEEEEeC--------CeEEEEEC
Confidence 3 4677764211 011 23689999999877543322221 12233332 44 466652 36899999
Q ss_pred CCCeEEEccCCCC-CCcceEEEEECCEEEEEccCCC-------------C-----cccCeEEEEECCCCcEEEccCCCCC
Q psy10286 579 DKDQWRIVKSMQK-HRSAGGVIAFDSYVYALGGHDG-------------L-----SIFDSVERYDPKTDEWTSVKPMLTK 639 (748)
Q Consensus 579 ~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~-------------~-----~~~~~~~~yd~~~~~W~~~~~~p~~ 639 (748)
.+.+-...-+... ++. .....-+..+|+.+...+ . .....++.+|+.+.+-..+...+..
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 240 (337)
T 1pby_B 162 EAGTLVEDKPIQSWEAE-TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp TTTEEEEEECSTTTTTT-TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCCcEeeeeeccccCCC-ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCC
Confidence 8877543222111 110 011111222332221110 0 0011588999998875433211222
Q ss_pred CcceeEEEE-CC-EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE-EEEEeCCCCCCCCCeEE
Q psy10286 640 RCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK-LWAIGGYDGVSNLPTVE 715 (748)
Q Consensus 640 r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~ 715 (748)
....+++.- ++ .+|+. .+.+++||+.+.+-...-.. +..-.+++.. +++ +|+ ++. ...+.
T Consensus 241 ~~~~~~~~s~dg~~l~~~--------~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~-~~~-----~~~i~ 304 (337)
T 1pby_B 241 VFYFSTAVNPAKTRAFGA--------YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWL-GGA-----LGDLA 304 (337)
T ss_dssp SCEEEEEECTTSSEEEEE--------ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEE-ESB-----SSEEE
T ss_pred CceeeEEECCCCCEEEEe--------CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEE-EcC-----CCcEE
Confidence 222223332 33 45554 15899999988754332111 2222333333 444 555 443 24799
Q ss_pred EEeCCCCce
Q psy10286 716 VYDPSTDSW 724 (748)
Q Consensus 716 ~yd~~~~~W 724 (748)
+||+.+++-
T Consensus 305 v~d~~~~~~ 313 (337)
T 1pby_B 305 AYDAETLEK 313 (337)
T ss_dssp EEETTTCCE
T ss_pred EEECcCCcE
Confidence 999988753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.014 Score=67.74 Aligned_cols=230 Identities=12% Similarity=0.169 Sum_probs=123.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--C--CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--K--NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+..||...+++..+..+.........+.. + +..++.||.+ ..+..||..+++|..+..+........++
T Consensus 31 g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~h~~~V~~v 105 (753)
T 3jro_A 31 KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRWSQIAVHAVHSASVNSV 105 (753)
T ss_dssp TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcccccccccCCCCCeEEE
Confidence 4677888877777666554433333333333 3 6777788754 35888899899887765544333333333
Q ss_pred EE--C--CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcceEEEEE--------------CCEEEEEccCCC
Q psy10286 553 AL--N--DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAF--------------DSYVYALGGHDG 613 (748)
Q Consensus 553 ~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--------------~~~iyv~GG~~~ 613 (748)
.+ + +.+++.||.+ ..+..||..++.-.....+. .+..-.+++.. ++..++.|+.++
T Consensus 106 ~~sp~~~~~~l~sgs~d-----g~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg 180 (753)
T 3jro_A 106 QWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN 180 (753)
T ss_dssp EECCGGGCSEEEEEETT-----SEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTS
T ss_pred EECCCCCCCEEEEEeCC-----CcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCC
Confidence 33 3 6778888755 36788887765211110000 01111112211 356777777654
Q ss_pred CcccCeEEEEECCCC--cEEEccCCCCCCcceeEEEE--C---CEEEEEeccCCCccccEEEEEeCCCCc--EEE-ccCC
Q psy10286 614 LSIFDSVERYDPKTD--EWTSVKPMLTKRCRLGVAAL--N---NKIYVCGGYDGAIFLQSVEMYDPITDE--WKM-IASM 683 (748)
Q Consensus 614 ~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~-~~~~ 683 (748)
.+..||..+. .+..+..+.........+.+ + +.+++.||.++ .+.+||..+.. +.. +...
T Consensus 181 -----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~ 250 (753)
T 3jro_A 181 -----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIWTQDNEQGPWKKTLLKE 250 (753)
T ss_dssp -----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-----CEEEEEESSSSSCCBCCBSSS
T ss_pred -----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-----EEEEecCCCCCCcceeEEecc
Confidence 4667766543 45444333322222333333 4 78888888654 57778876642 211 1111
Q ss_pred CCCCcc-eEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCC-CceEecCCCC
Q psy10286 684 NVMRSR-VALVA-NMGKLWAIGGYDGVSNLPTVEVYDPST-DSWAFVAPMC 731 (748)
Q Consensus 684 p~~r~~-~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~~ 731 (748)
...... .+++. -+++.++.||.++ .|.+||..+ +.|.....+.
T Consensus 251 ~~~~~~v~~l~~spdg~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~ 296 (753)
T 3jro_A 251 EKFPDVLWRASWSLSGNVLALSGGDN-----KVTLWKENLEGKWEPAGEVH 296 (753)
T ss_dssp SCCSSCCCCEEECTTTCCEEEECSSS-----CEECCBCCSSSCCBCCCCBC
T ss_pred CCCCCceEEEEEcCCCCEEEEEcCCC-----EEEEEecCCCCCcccccccc
Confidence 111111 12222 3677888887543 488888874 5777665543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.057 Score=57.49 Aligned_cols=229 Identities=12% Similarity=-0.011 Sum_probs=125.1
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..++.+|.....-..+..-.. .-.+.+.. +++.+++++.++ ....++.+|..+++...+...+. ...+.+..
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~--~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQ--PLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFPR--HNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESS--CEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEEEECCSS--CEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeCCCC--cceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEEEeecCCC--cccCEEEcC
Confidence 578888887654444322111 11222222 566556665432 23589999999988776654332 22223332
Q ss_pred CCE-EEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 NDK-LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+|+ |++.+..++ ...++.||..+++...+...+ .......+ +++..++++..+. ...++.+|..+.+-.
T Consensus 233 dg~~la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~---~~~~~~~~spdg~~l~~~s~~~g--~~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 233 DGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGR---SNNTEPTWFPDSQNLAFTSDQAG--RPQVYKVNINGGAPQ 304 (415)
T ss_dssp TSSEEEEEECTTS---SCEEEEEETTTCCEEECCCCS---SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTSSCCE
T ss_pred CCCEEEEEEecCC---CceEEEEECCCCCEEeCcCCC---CcccceEECCCCCEEEEEECCCC--CcEEEEEECCCCCEE
Confidence 554 554554332 247999999988876654322 11222222 5554444443211 347999999887755
Q ss_pred EccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeCCCCC
Q psy10286 632 SVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGGYDGV 708 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~ 708 (748)
.+... .. ....+.+ +++.+++++..+. ...++.+|+.+.+...+.... .....+. -+++.+++++.++.
T Consensus 305 ~l~~~--~~-~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 305 RITWE--GS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp ECCCS--SS-EEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETT
T ss_pred EEecC--CC-cccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCC
Confidence 54321 11 1222223 5555555543321 358999999998887764432 2222222 26776667664332
Q ss_pred CCCCeEEEEeCCCCceEecCC
Q psy10286 709 SNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~W~~~~~ 729 (748)
...++++|..++..+.++.
T Consensus 377 --~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 377 --GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp --EEEEEEEETTSCCEEECCC
T ss_pred --ccEEEEEECCCCcEEEeeC
Confidence 2379999998887776643
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.27 Score=50.32 Aligned_cols=216 Identities=14% Similarity=0.173 Sum_probs=108.5
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCC-CCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMC-FKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~-~~r~~~~~~ 552 (748)
..+..+|..+.+-...-+... ..-.+++.. ++...+.||.+ ..+..||..+.. ......+. ....-.++.
T Consensus 77 g~v~iWd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~d-----~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~ 150 (340)
T 1got_B 77 GKLIIWDSYTTNKVHAIPLRS-SWVMTCAYAPSGNYVACGGLD-----NICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150 (340)
T ss_dssp TEEEEEETTTCCEEEEEECSS-SCEEEEEECTTSSEEEEEETT-----CEEEEEETTTCSBSCEEEEEEECCSSCEEEEE
T ss_pred CcEEEEECCCCCcceEeecCC-ccEEEEEECCCCCEEEEEeCC-----CeEEEEECccCCCcceeEEEecCCCccEEEEE
Confidence 467788877665332211111 111222222 66777778754 467888877642 11111111 111111222
Q ss_pred E-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 553 A-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 553 ~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
. -++. ++.|+.+ ..+..||..+..-... +...... .+++.. ++.+++.|+.++ .+..||..+..
T Consensus 151 ~~~~~~-l~s~s~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~~~~~ 217 (340)
T 1got_B 151 FLDDNQ-IVTSSGD-----TTCALWDIETGQQTTT--FTGHTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDVREGM 217 (340)
T ss_dssp EEETTE-EEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCS
T ss_pred ECCCCc-EEEEECC-----CcEEEEECCCCcEEEE--EcCCCCceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCe
Confidence 2 2556 4455543 4688899888764322 1111111 222222 567788888754 58888987765
Q ss_pred EEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCC
Q psy10286 630 WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGY 705 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~ 705 (748)
-... +.........+.+ ++..++.||.+ ..+.+||..+.+-...-..+........+.. ++++++.|+.
T Consensus 218 ~~~~--~~~h~~~v~~v~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~ 290 (340)
T 1got_B 218 CRQT--FTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD 290 (340)
T ss_dssp EEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred eEEE--EcCCcCCEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECC
Confidence 3321 1111111222223 56778888765 3688899877653322111111122233333 6778888875
Q ss_pred CCCCCCCeEEEEeCCCCc
Q psy10286 706 DGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~ 723 (748)
+ ..+.+||..+..
T Consensus 291 d-----~~i~vwd~~~~~ 303 (340)
T 1got_B 291 D-----FNCNVWDALKAD 303 (340)
T ss_dssp T-----SEEEEEETTTCC
T ss_pred C-----CeEEEEEcccCc
Confidence 4 368888876643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.078 Score=54.90 Aligned_cols=190 Identities=14% Similarity=0.183 Sum_probs=106.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--C--CEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--N--DKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++..++.|+.+ ..+..||....++..+..+......-.++.+ + +.+++.|+.+ ..+..||..++.|
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~ 91 (379)
T 3jrp_A 22 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRW 91 (379)
T ss_dssp SSSEEEEEETT-----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCCEEEEEECC-----CcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC-----CEEEEEEcCCCce
Confidence 45666677654 3577788776677665444322222233333 2 6777777765 3688899999988
Q ss_pred EEccCCCCCCcceEEEEE--C--CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-----------
Q psy10286 584 RIVKSMQKHRSAGGVIAF--D--SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL----------- 648 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----------- 648 (748)
..+..+.........+.+ + +.+++.|+.+ ..+..||..+........+.........+.+
T Consensus 92 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 92 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD-----GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred eEeeeecCCCcceEEEEeCCCCCCCEEEEecCC-----CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 777655433333333333 3 5677777764 3688888876632111011111111122222
Q ss_pred ----CCEEEEEeccCCCccccEEEEEeCCCC--cEEEccCCCCCCcceEEEEE--C---CEEEEEeCCCCCCCCCeEEEE
Q psy10286 649 ----NNKIYVCGGYDGAIFLQSVEMYDPITD--EWKMIASMNVMRSRVALVAN--M---GKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 649 ----~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~l~v~GG~~~~~~~~~v~~y 717 (748)
++..++.|+.++ .+.+||..+. .|..+..+.........+.+ + +++++.||.++ .+.+|
T Consensus 167 ~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-----~i~iw 236 (379)
T 3jrp_A 167 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIW 236 (379)
T ss_dssp ---CTTCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEEE
T ss_pred cCCCCCCEEEEEeCCC-----eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-----EEEEE
Confidence 367788887654 5777776543 46555444333333333333 4 78888888654 47888
Q ss_pred eCCCC
Q psy10286 718 DPSTD 722 (748)
Q Consensus 718 d~~~~ 722 (748)
|..+.
T Consensus 237 d~~~~ 241 (379)
T 3jrp_A 237 TQDNE 241 (379)
T ss_dssp EESST
T ss_pred eCCCC
Confidence 88775
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.22 Score=50.30 Aligned_cols=212 Identities=12% Similarity=0.070 Sum_probs=112.8
Q ss_pred ccceEEEEeCCCCceEEccCCCccccee-EEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRV-GVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
.-..+..||..+++......+....... +++.. ++..++.|+.+ ..+..||..+.+....-..... .-.+++
T Consensus 117 ~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~~~-~i~~~~ 190 (337)
T 1gxr_A 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHTD-GASCID 190 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred CCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeecccC-ceEEEE
Confidence 3357889999888754443332222222 22322 56677777754 3588999988765433221111 122222
Q ss_pred EE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 553 AL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.. ++..++.|+.+ ..+..||..+.+-...-..+. .-.+++. -++..+++|+.++ .+..||..+.+-
T Consensus 191 ~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~-----~i~~~~~~~~~~ 258 (337)
T 1gxr_A 191 ISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDFTS--QIFSLGYCPTGEWLAVGMESS-----NVEVLHVNKPDK 258 (337)
T ss_dssp ECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSS--CEEEEEECTTSSEEEEEETTS-----CEEEEETTSSCE
T ss_pred ECCCCCEEEEEecC-----CcEEEEECCCCceEeeecCCC--ceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCCe
Confidence 32 66677777754 468899988876433322211 1122332 2566777776543 588999887764
Q ss_pred EEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCC
Q psy10286 631 TSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~ 707 (748)
...... ......+.+ +++.++.|+.+ ..+.+||..+.+-..... ....-.++... +++.++.|+.++
T Consensus 259 ~~~~~~---~~~v~~~~~~~~~~~l~~~~~d-----g~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg 328 (337)
T 1gxr_A 259 YQLHLH---ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EEECCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEEcCC---ccceeEEEECCCCCEEEEecCC-----CcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEecCCC
Confidence 433221 111222223 56677777754 478899988776543211 11112222222 567777777543
Q ss_pred CCCCCeEEEEeC
Q psy10286 708 VSNLPTVEVYDP 719 (748)
Q Consensus 708 ~~~~~~v~~yd~ 719 (748)
.+.+||.
T Consensus 329 -----~i~iw~~ 335 (337)
T 1gxr_A 329 -----KATVYEV 335 (337)
T ss_dssp -----CEEEEEE
T ss_pred -----eEEEEEE
Confidence 4666653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.038 Score=58.30 Aligned_cols=225 Identities=10% Similarity=0.049 Sum_probs=106.3
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc--cccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE--TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSML 498 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~ 498 (748)
++..++.|+.+ ..+..||........+... .+....+..++.....+..-..+..||..+++....-.....
T Consensus 119 ~~~~l~~~~~d------g~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 192 (425)
T 1r5m_A 119 DGNSIVTGVEN------GELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET 192 (425)
T ss_dssp TSSEEEEEETT------SCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred CCCEEEEEeCC------CeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence 44566666643 2477777433333333221 111122222322222223335688888887765433222111
Q ss_pred c--------------ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeC
Q psy10286 499 R--------------SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGG 563 (748)
Q Consensus 499 r--------------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG 563 (748)
. .-.+++...+..++.|+.+ ..+..||..+.+-...-... ...-.+++.. ++..++.|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 266 (425)
T 1r5m_A 193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKLIGH-HGPISVLEFNDTNKLLLSAS 266 (425)
T ss_dssp -------------CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEEECCC-SSCEEEEEEETTTTEEEEEE
T ss_pred CccceeeccccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeeeeccC-CCceEEEEECCCCCEEEEEc
Confidence 1 0222333333446666643 46888998876422111111 1111223333 666777777
Q ss_pred CCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcc
Q psy10286 564 YDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCR 642 (748)
Q Consensus 564 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 642 (748)
.+ ..+..||..+.+....-.. ....-.+++.. ++ .++.|+.+ ..+..||..+.+-...- ......
T Consensus 267 ~d-----~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~~--~~~~~~ 332 (425)
T 1r5m_A 267 DD-----GTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLALS--IVDGVP 332 (425)
T ss_dssp TT-----SCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEEE--ECTTCC
T ss_pred CC-----CEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEec--ccCCcc
Confidence 54 3578888776542111110 11112233333 55 66666654 36889998876533321 111122
Q ss_pred eeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 643 LGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 643 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
...+.+ ++.+++.|+.+ ..+.+||..+..
T Consensus 333 i~~~~~s~~~~~l~~~~~d-----g~i~i~~~~~~~ 363 (425)
T 1r5m_A 333 IFAGRISQDGQKYAVAFMD-----GQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEECTTSSEEEEEETT-----SCEEEEECHHHH
T ss_pred EEEEEEcCCCCEEEEEECC-----CeEEEEECCCCc
Confidence 223333 56777777754 367788876544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=96.83 E-value=0.15 Score=51.30 Aligned_cols=220 Identities=12% Similarity=0.081 Sum_probs=114.9
Q ss_pred ceEEEEeCCCCceEEccCC---CcccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEECCCCeEEEc-cCCCCC---cc
Q psy10286 477 STVEVFDPLVGRWQMAEAM---SMLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKV-SPMCFK---RS 547 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~---r~ 547 (748)
..+.+||+.++++...... .....-.+++.. + +.+|+.+.. +.+.+||+. ++...+ ...... ..
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 118 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTD-GTFEEIAKKDSEGRRMQG 118 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETT-SCEEECCSBCTTSCBCBC
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------CCEEEEeCC-CCEEEEEeccCCCccccC
Confidence 5689999988888765421 011122333333 5 788987641 268999998 777665 332211 11
Q ss_pred eeEEEEE-CCEEEEEeCCCC----------CCCCceEEEEeCCCCeEEEcc-CCCCCCcceEEEEE-----CC-EEEEEc
Q psy10286 548 AVGAAAL-NDKLYVCGGYDG----------VSSLNTVECYEPDKDQWRIVK-SMQKHRSAGGVIAF-----DS-YVYALG 609 (748)
Q Consensus 548 ~~~~~~~-~~~iyv~GG~~~----------~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-----~~-~iyv~G 609 (748)
-.+++.. +|++|+.....+ ......+++||+. .+..... ....+ ...+.. ++ .+|+..
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~~i~~~~~~d~dg~~l~v~~ 194 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSE---EEEEEEECTTSCEEEEEEEE
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCc---ceEEEecccCCCCCEEEEEE
Confidence 2233333 678988754221 1123578999987 5554432 11111 233333 34 577765
Q ss_pred cCCCCcccCeEEEEECC-CCcEEEc---cCCCCC--CcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccC
Q psy10286 610 GHDGLSIFDSVERYDPK-TDEWTSV---KPMLTK--RCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS 682 (748)
Q Consensus 610 G~~~~~~~~~~~~yd~~-~~~W~~~---~~~p~~--r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (748)
.. ...+++||+. +.++... ..++.. ..-.+++.- ++.+|+.... .+.+.+||+.+.+....-.
T Consensus 195 ~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~~ 264 (314)
T 1pjx_A 195 TP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIR 264 (314)
T ss_dssp TT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEE
T ss_pred CC-----CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEEe
Confidence 43 2478899876 4443221 122211 111223322 5788887532 2478999998543221111
Q ss_pred CCCCCcceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 683 MNVMRSRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 683 ~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+. ..-.+++.. +++ ||+.+..+ ..+++|++....
T Consensus 265 ~~~-~~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~~~g 301 (314)
T 1pjx_A 265 CPF-EKPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQRNG 301 (314)
T ss_dssp CSS-SCEEEEEECTTSSEEEEEETTT-----TEEEEEECSSCB
T ss_pred CCC-CCceeEEECCCCCEEEEEeCCC-----CeEEEEeCCCCC
Confidence 222 122233322 444 77765422 479999987643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.35 Score=48.03 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=118.8
Q ss_pred ccceEEEEeCCCCc--eEEccCCCcccceeEEEE-ECCEEEEEccCCCCCCCCeEEEEECCCC--eEEEccCCCCCccee
Q psy10286 475 SLSTVEVFDPLVGR--WQMAEAMSMLRSRVGVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRR--VWNKVSPMCFKRSAV 549 (748)
Q Consensus 475 ~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~r~~~ 549 (748)
.-..+..+|+.+++ |+.-..-. .. .+.+.. -+|.+++.+. +.+..||+ +. .|+...+ .....+
T Consensus 13 ~~~~v~~~d~~tG~~~w~~~~~~~-~~-~~~~~~~pdG~ilvs~~-------~~V~~~d~-~G~~~W~~~~~--~~~~~~ 80 (276)
T 3no2_A 13 GWNKIAIINKDTKEIVWEYPLEKG-WE-CNSVAATKAGEILFSYS-------KGAKMITR-DGRELWNIAAP--AGCEMQ 80 (276)
T ss_dssp TCSEEEEEETTTTEEEEEEECCTT-CC-CCEEEECTTSCEEEECB-------SEEEEECT-TSCEEEEEECC--TTCEEE
T ss_pred CCCEEEEEECCCCeEEEEeCCCcc-CC-CcCeEECCCCCEEEeCC-------CCEEEECC-CCCEEEEEcCC--CCcccc
Confidence 34567888887775 65443211 12 233333 3788888432 46899999 44 3765442 112233
Q ss_pred EEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCe-EEEcc--CCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEE
Q psy10286 550 GAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVK--SMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERY 623 (748)
Q Consensus 550 ~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~--~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 623 (748)
++... +|++++..+.. ...++.+|+..+. |+... ..+.+ .........+|.+++.... ...+.+|
T Consensus 81 ~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----~~~v~~~ 151 (276)
T 3no2_A 81 TARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-----TSEVREI 151 (276)
T ss_dssp EEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-----TTEEEEE
T ss_pred ccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-----CCEEEEE
Confidence 44444 77777764421 2478888986553 54331 11111 1122233346666655443 2468999
Q ss_pred ECCCC-cEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCc--EEEcc-CCCCCCc--ceEEEE-E
Q psy10286 624 DPKTD-EWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIA-SMNVMRS--RVALVA-N 695 (748)
Q Consensus 624 d~~~~-~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~-~~p~~r~--~~~~~~-~ 695 (748)
|++-+ .|+.-.. ...+++... ++.+++.++.+ ..+..+|+++.+ |+.-. ..+..+. -.++.. .
T Consensus 152 d~~G~~~w~~~~~----~~~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 152 APNGQLLNSVKLS----GTPFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp CTTSCEEEEEECS----SCCCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred CCCCCEEEEEECC----CCccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 98732 3665432 122334444 67888877542 469999999654 66532 2332232 123333 3
Q ss_pred CCEEEEEe--CCCCCC---CCCeEEEEeCCCC-ceEe
Q psy10286 696 MGKLWAIG--GYDGVS---NLPTVEVYDPSTD-SWAF 726 (748)
Q Consensus 696 ~~~l~v~G--G~~~~~---~~~~v~~yd~~~~-~W~~ 726 (748)
+|.+||.. |..... ....++.+|+..+ .|+.
T Consensus 223 ~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~ 259 (276)
T 3no2_A 223 NGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQL 259 (276)
T ss_dssp TSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEE
T ss_pred CCCEEEEeccCccccccccCCceEEEECCCCCEEEEe
Confidence 88999886 543210 1235777777554 4664
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.061 Score=53.25 Aligned_cols=229 Identities=10% Similarity=-0.046 Sum_probs=122.0
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCC-CeEEEccCCCCCcceeEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVR-RVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t-~~W~~~~~~~~~r~~~~~~ 552 (748)
.-..++.+|..+++...+..... .-.+++.. +++.+++++. ..++++|..+ .+...+........-..++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVWQTPE--LFEAPNWSPDGKYLLLNSE------GLLYRLSLAGDPSPEKVDTGFATICNNDHG 91 (297)
T ss_dssp CCEEEEEEETTTTEEEEEEEESS--CCEEEEECTTSSEEEEEET------TEEEEEESSSCCSCEECCCTTCCCBCSCCE
T ss_pred cceeEEEEeCCCCceeeeccCCc--ceEeeEECCCCCEEEEEcC------CeEEEEeCCCCCCceEeccccccccccceE
Confidence 34578888888877665433211 11222222 5665566541 3799999998 7766654333212212222
Q ss_pred E-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 553 A-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 553 ~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
. -+++.+++++.... ....++.+|..+.....+..... ....+.. ++ .+++.++.++ ...+|.+|..+..
T Consensus 92 ~spdg~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 92 ISPDGALYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGV 164 (297)
T ss_dssp ECTTSSEEEEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCC
T ss_pred ECCCCCEEEEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCc
Confidence 2 36666666553321 34678899988776555443221 2222222 34 4555555433 2368888888877
Q ss_pred EEEccCCCCCCcceeEEEE--CCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeC
Q psy10286 630 WTSVKPMLTKRCRLGVAAL--NNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGG 704 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG 704 (748)
...+...+. ......+ +++ |++.++.++ ...+|.++........+.... .....+.. +++.+++++
T Consensus 165 ~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~ 235 (297)
T 2ojh_A 165 ETRLTHGEG---RNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVS 235 (297)
T ss_dssp EEECCCSSS---CEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEE
T ss_pred ceEcccCCC---ccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEE
Confidence 766643321 1122223 454 444443332 357888888777776664322 11222222 566555554
Q ss_pred CCCCC------CCCeEEEEeCCCCceEec
Q psy10286 705 YDGVS------NLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 705 ~~~~~------~~~~v~~yd~~~~~W~~~ 727 (748)
.++.. ....++++|..+++...+
T Consensus 236 ~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 236 YDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp EETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred cCCCCCcccccCceEEEEEecCCCCceee
Confidence 43221 124699999998876544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.033 Score=55.27 Aligned_cols=229 Identities=10% Similarity=-0.014 Sum_probs=118.3
Q ss_pred CcceEeecCCCCceeecccc--cccceEEecccccccCCCccceEEEEeCCC-CceEEccCCCcccceeEEEEE-CCEEE
Q psy10286 437 LSTVEVFDPLVGRWQMAEEE--TLSNAVISTKSCLTKAGDSLSTVEVFDPLV-GRWQMAEAMSMLRSRVGVAVM-KNRLY 512 (748)
Q Consensus 437 ~~~~~~y~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~-~~~iy 512 (748)
..+++.||..++....+... .+....+..++.....+ ....++.+|..+ ++...+........-.+++.. +++.+
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 99 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLN-SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY 99 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEE-ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEE-cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence 35677777777766544321 12222333333221111 135799999998 877766543321211222222 55555
Q ss_pred EEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC
Q psy10286 513 AFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 513 v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
++++.... ....+|.+|..+.+...+..... ....+.. ++ .+++.++.++ ...++.+|..+.....+...+
T Consensus 100 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 100 AISDKVEF-GKSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ---VFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp EEEECTTT-SSCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT---EEEEEEEETTTCCEEECCCSS
T ss_pred EEEEeCCC-CcceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC---ceEEEEEECCCCcceEcccCC
Confidence 55553221 34679999988776555543221 2223332 44 4554554332 136777778777766654332
Q ss_pred CCCcceEEEEE-CCE-EEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCc----
Q psy10286 591 KHRSAGGVIAF-DSY-VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAI---- 662 (748)
Q Consensus 591 ~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~---- 662 (748)
.. ...++.. ++. +++.+..++ ...+|.+++.......+.... .......+ +++.+++++.++..
T Consensus 173 ~~--~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 244 (297)
T 2ojh_A 173 GR--NDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDHP 244 (297)
T ss_dssp SC--EEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTCCSCC
T ss_pred Cc--cccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCCCccc
Confidence 21 1122222 444 554443333 357888988877777664322 11222222 55555555433221
Q ss_pred --cccEEEEEeCCCCcEEEcc
Q psy10286 663 --FLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 663 --~~~~v~~yd~~~~~W~~~~ 681 (748)
....++.+|..+.+...+.
T Consensus 245 ~~~~~~l~~~d~~~~~~~~~~ 265 (297)
T 2ojh_A 245 RDLDVRVQLMDMDGGNVETLF 265 (297)
T ss_dssp SSEEEEEEEEETTSCSCEEEE
T ss_pred ccCceEEEEEecCCCCceeee
Confidence 2357999999888766554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.09 Score=60.23 Aligned_cols=239 Identities=10% Similarity=-0.053 Sum_probs=122.8
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC-----CeEEEccCCCCCcc----
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR-----RVWNKVSPMCFKRS---- 547 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t-----~~W~~~~~~~~~r~---- 547 (748)
..++.+|..+++-..+......-...+ ..-+|+..++.. ...++++|..+ ++...+........
T Consensus 101 ~~i~~~d~~~~~~~~l~~~~~~~~~~~-~SpdG~~la~~~------~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLFDTNEETASLD-FSPVGDRVAYVR------NHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp TEEEEEETTTTEEEEEECCTTCCTTCE-ECTTSSEEEEEE------TTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred CEEEEEECCCCceEEccCCcccccCCc-CCCCCCEEEEEE------CCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 678999998887665543322111111 112443333321 14688888877 66555433322210
Q ss_pred ---------eeEEEE-ECCEEEEEeCCCC----------------------------CCCCceEEEEeCCCCeEEEccCC
Q psy10286 548 ---------AVGAAA-LNDKLYVCGGYDG----------------------------VSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 548 ---------~~~~~~-~~~~iyv~GG~~~----------------------------~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
..+.+. -+|+..++++.+. ......++.||..+++-..+...
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 122222 2665555554211 11235789999998876655432
Q ss_pred CCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCC-cEEEccCCCCCCc----ceeEEEE--CCEEEEEeccCC
Q psy10286 590 QKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTD-EWTSVKPMLTKRC----RLGVAAL--NNKIYVCGGYDG 660 (748)
Q Consensus 590 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~----~~~~~~~--~~~i~v~GG~~~ 660 (748)
.........+.+ +++..++++.+.......++.+|+.+. .+..+........ ......- ++++++.+..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 111112122222 555444444433333457999999988 6665532111110 1112233 677666665443
Q ss_pred CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--C-CEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 661 AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--M-GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
...+|.+|........+..-.... .....+ + +.|++.+..++ .....++.+|..++..+.+.
T Consensus 334 ---~~~l~~~~~~~~~~~~l~~~~~~v--~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~~~~~~l~ 398 (706)
T 2z3z_A 334 ---WNHLYLYDTTGRLIRQVTKGEWEV--TNFAGFDPKGTRLYFESTEAS-PLERHFYCIDIKGGKTKDLT 398 (706)
T ss_dssp ---SCEEEEEETTSCEEEECCCSSSCE--EEEEEECTTSSEEEEEESSSC-TTCBEEEEEETTCCCCEESC
T ss_pred ---ccEEEEEECCCCEEEecCCCCeEE--EeeeEEcCCCCEEEEEecCCC-CceEEEEEEEcCCCCceecc
Confidence 467899997777777764322111 121222 3 45666654322 22347899998887766654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.16 Score=53.01 Aligned_cols=273 Identities=10% Similarity=-0.022 Sum_probs=133.8
Q ss_pred cceEeecCCCCceeecccccc--cc-eEEecccc-cccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEE
Q psy10286 438 STVEVFDPLVGRWQMAEEETL--SN-AVISTKSC-LTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYA 513 (748)
Q Consensus 438 ~~~~~y~~~~~~W~~~~~~~~--~~-~~~~~~~~-~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv 513 (748)
..++.+|..++....+..... .. ...+.++. +... .....++.+|..+++-..+...+... ..++..++
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~-~~~~~l~~~d~~~~~~~~~~~~~~~~------~~~g~~l~ 132 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYV-KNELNLMKVDLETLEEQVIYTVDEEW------KGYGTWVA 132 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEE-ETTTEEEEEETTTCCEEEEEECCTTE------EEEEEEEE
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEE-EcCCcEEEEECCCCCcEEEEeccccc------CCCCCEEE
Confidence 467888888877665543211 11 22333332 2111 11236899998887766554433221 11112122
Q ss_pred Ecc-------------CC--C----------CCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCE-EEEEeCCCC
Q psy10286 514 FGG-------------YN--G----------SERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDK-LYVCGGYDG 566 (748)
Q Consensus 514 ~GG-------------~~--~----------~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~ 566 (748)
+.. .. + ......++.+|+.+++...+..-+ ....+....- ++. |+.... ++
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~-~~~~~~~~sp~dg~~l~~~~~-~~ 210 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT-AWLGHPIYRPFDDSTVGFCHE-GP 210 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEEC-SC
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC-cccccceECCCCCCEEEEEec-CC
Confidence 110 00 0 023357999999988876654311 1122222222 344 544432 21
Q ss_pred -CCCCceEEEEeCCCCeEEEccCCCCCCcceE-EEEE-CCE-EEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcc
Q psy10286 567 -VSSLNTVECYEPDKDQWRIVKSMQKHRSAGG-VIAF-DSY-VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCR 642 (748)
Q Consensus 567 -~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 642 (748)
......++.+|..+..+..+.. ..+..... .+.. +++ |++. +..+......++.+|+.+.+...+...+. ..
T Consensus 211 ~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~ 286 (396)
T 3c5m_A 211 HDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYV-SYFKGQTDRVIYKANPETLENEEVMVMPP--CS 286 (396)
T ss_dssp SSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEE-EEETTTCCEEEEEECTTTCCEEEEEECCS--EE
T ss_pred CCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEE-ecCCCCccceEEEEECCCCCeEEeeeCCC--CC
Confidence 1122578999998887777654 21111111 2222 454 4444 22211112349999999888777654432 11
Q ss_pred eeEEEE-CCEEEEEeccCC-----------CccccEEEEEeCCCCcEEEccCCCCCC----------cceEEEEECC-EE
Q psy10286 643 LGVAAL-NNKIYVCGGYDG-----------AIFLQSVEMYDPITDEWKMIASMNVMR----------SRVALVANMG-KL 699 (748)
Q Consensus 643 ~~~~~~-~~~i~v~GG~~~-----------~~~~~~v~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~-~l 699 (748)
....- +++++++++... ......++.+|+.+.+...+...+... .......-++ .|
T Consensus 287 -~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l 365 (396)
T 3c5m_A 287 -HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGV 365 (396)
T ss_dssp -EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEE
T ss_pred -CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeE
Confidence 22233 677666654321 112368999999888766554322210 1111122244 45
Q ss_pred EEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 700 WAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
++.+...+ ...++.+|..++.++.+
T Consensus 366 ~~~s~~~~---~~~l~~~~~~~~~~~~~ 390 (396)
T 3c5m_A 366 LFTSDFEG---VPAIYIADVPESYKHLE 390 (396)
T ss_dssp EEEECTTS---SCEEEEEECCTTCC---
T ss_pred EEEecCCC---CceEEEEEEcccccccc
Confidence 54443322 35799999998887764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.082 Score=60.94 Aligned_cols=283 Identities=8% Similarity=-0.082 Sum_probs=136.2
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccccc---------------------------ccceEEecccc-cccC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET---------------------------LSNAVISTKSC-LTKA 472 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~---------------------------~~~~~~~~~~~-~~~~ 472 (748)
+++.+++++....+....+++.+|..+++...+.... +....++.++. +...
T Consensus 47 dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~ 126 (741)
T 2ecf_A 47 DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFP 126 (741)
T ss_dssp TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEE
T ss_pred CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEE
Confidence 3444444443122223457899999888775543211 22233444433 2211
Q ss_pred CCccceEEEEeCCCC---ceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCc--
Q psy10286 473 GDSLSTVEVFDPLVG---RWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKR-- 546 (748)
Q Consensus 473 g~~~~~~~~yd~~~~---~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r-- 546 (748)
.. ..++.+|..++ .-..+..... .-..++.. +|+..+++.. ..++.+|..+++...+.......
T Consensus 127 ~~--~~i~~~d~~~~~~~~~~~l~~~~~--~~~~~~~SPDG~~la~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 127 LG--GELYLYDLKQEGKAAVRQLTHGEG--FATDAKLSPKGGFVSFIRG------RNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp ET--TEEEEEESSSCSTTSCCBCCCSSS--CEEEEEECTTSSEEEEEET------TEEEEEETTTTEEEECCCCCCSSEE
T ss_pred eC--CcEEEEECCCCCcceEEEcccCCc--ccccccCCCCCCEEEEEeC------CcEEEEecCCCCEEEeccCCcccee
Confidence 11 68999999887 5444433211 11222222 5654455431 37999999998877664432210
Q ss_pred --------------ceeEEEEECCEEEEEeCCCCC----------------------------CCCceEEEEeCCC-CeE
Q psy10286 547 --------------SAVGAAALNDKLYVCGGYDGV----------------------------SSLNTVECYEPDK-DQW 583 (748)
Q Consensus 547 --------------~~~~~~~~~~~iyv~GG~~~~----------------------------~~~~~~~~yd~~~-~~W 583 (748)
....+..-+|+..+++..++. .....++.+|..+ .+-
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~ 276 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT 276 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce
Confidence 011122225554444432211 0123788889887 664
Q ss_pred EEccCC-CCCCc-ceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC----cceeEEEECCEEEEEe
Q psy10286 584 RIVKSM-QKHRS-AGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR----CRLGVAALNNKIYVCG 656 (748)
Q Consensus 584 ~~~~~~-~~~r~-~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~~~~~~~~~~~i~v~G 656 (748)
..+... ..... ...+. -+| .|++... +.......++.+|+.+.+...+....... ...-+..-++++++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~-~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 354 (741)
T 2ecf_A 277 QWIDLGKEQDIYLARVNW-RDPQHLSFQRQ-SRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSS 354 (741)
T ss_dssp EEECCCSCSSEEEEEEEE-EETTEEEEEEE-ETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred EEecCCCCcceEEEEEEe-CCCCEEEEEEe-cccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence 444321 11111 11222 344 4544433 22223467999999998876653222111 1112222367777666
Q ss_pred ccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEE--EECC-EEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 657 GYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV--ANMG-KLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~-~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+.++ ...+|.+|.... +..+..-... -...+ .-++ .|++.+..++ .....+|..+....
T Consensus 355 ~~~g---~~~l~~~~~~~~-~~~l~~~~~~--v~~~~~~s~dg~~l~~~~~~~~-~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 355 ERTG---FQHLYRIDSKGK-AAALTHGNWS--VDELLAVDEKAGLAYFRAGIES-ARESQIYAVPLQGG 416 (741)
T ss_dssp CTTS---SCEEEEECSSSC-EEESCCSSSC--EEEEEEEETTTTEEEEEECSSC-TTCBEEEEEETTCC
T ss_pred cCCC---ccEEEEEcCCCC-eeeeeecceE--EEeEeEEeCCCCEEEEEEeCCC-CceEEEEEEEcCCC
Confidence 5543 367899997766 6655432111 11222 2244 5665554332 12234666665444
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=96.74 E-value=0.23 Score=50.32 Aligned_cols=219 Identities=14% Similarity=0.114 Sum_probs=105.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-- 554 (748)
..+..++........................++..++.|+.+ ..+..||.....-...........-......
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-----KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC-----CeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 456677776665443332222222122222245566667654 3466777765543322221111111122221
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
.+.+++.||.+ ..+..||..+.+....-.... ..-.+++.. ++.+++.|+.++ .+..||..+.+-..
T Consensus 183 ~~~~~~~s~~~d-----~~i~i~d~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~Dg-----~i~iwd~~~~~~~~ 251 (340)
T 4aow_A 183 SSNPIIVSCGWD-----KLVKVWNLANCKLKTNHIGHT-GYLNTVTVSPDGSLCASGGKDG-----QAMLWDLNEGKHLY 251 (340)
T ss_dssp SSSCEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEEEETTC-----EEEEEETTTTEEEE
T ss_pred CCCcEEEEEcCC-----CEEEEEECCCCceeeEecCCC-CcEEEEEECCCCCEEEEEeCCC-----eEEEEEeccCceee
Confidence 23456666644 357888988776433221111 111122222 567778887654 57888887664322
Q ss_pred ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE-ccC-CC-----CCCcceEEEEE--CCEEEEEe
Q psy10286 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-IAS-MN-----VMRSRVALVAN--MGKLWAIG 703 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~-~p-----~~r~~~~~~~~--~~~l~v~G 703 (748)
. +.....-..++...+..++.||.+ ..+.+||..+..-.. +.. .. .......++.+ +++.++.|
T Consensus 252 ~--~~~~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg 324 (340)
T 4aow_A 252 T--LDGGDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAG 324 (340)
T ss_dssp E--EECSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEE
T ss_pred e--ecCCceEEeeecCCCCceeeccCC-----CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEE
Confidence 2 222222222333334445556543 468888887765332 111 10 01111222222 67778888
Q ss_pred CCCCCCCCCeEEEEeCCCCc
Q psy10286 704 GYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 704 G~~~~~~~~~v~~yd~~~~~ 723 (748)
|.++ .|.+||.++++
T Consensus 325 s~Dg-----~v~iW~~~tGt 339 (340)
T 4aow_A 325 YTDN-----LVRVWQVTIGT 339 (340)
T ss_dssp ETTS-----CEEEEEEEC--
T ss_pred eCCC-----EEEEEeCCCcC
Confidence 8653 58889887764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.18 Score=57.76 Aligned_cols=280 Identities=12% Similarity=0.053 Sum_probs=141.4
Q ss_pred CcceEeecCCCCceeecccc---------cccceEEeccccccc-----CCCccceEEEEeCCCCceEEccCCCccccee
Q psy10286 437 LSTVEVFDPLVGRWQMAEEE---------TLSNAVISTKSCLTK-----AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRV 502 (748)
Q Consensus 437 ~~~~~~y~~~~~~W~~~~~~---------~~~~~~~~~~~~~~~-----~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 502 (748)
...+|..+...+.|..+-.. .+....++.++.... .|..-..++.+|..+++......++..+. .
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~ 171 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-A 171 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-C
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-c
Confidence 34566666666666654321 122233444443322 34434689999999988641112222221 2
Q ss_pred EEEEE-CCEEEEEccCCCC--------CCCCeEEEEECCCCeE--EEccCCCCC-cceeEEEEE-CCEEEEEeCCCCCCC
Q psy10286 503 GVAVM-KNRLYAFGGYNGS--------ERLSTVEEFDPVRRVW--NKVSPMCFK-RSAVGAAAL-NDKLYVCGGYDGVSS 569 (748)
Q Consensus 503 ~~~~~-~~~iyv~GG~~~~--------~~~~~v~~yd~~t~~W--~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~ 569 (748)
+.+.. +|+.++++..+.. .....+++++..+..- ..+...+.. ....+.... +|+..+++...+. .
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~ 250 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-S 250 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-T
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-C
Confidence 22222 6666666554322 2345699999887652 233222222 222233322 5554444432221 2
Q ss_pred CceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc---EEEccCCCCCCcceeEE
Q psy10286 570 LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE---WTSVKPMLTKRCRLGVA 646 (748)
Q Consensus 570 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~ 646 (748)
...++.+|..+..|..+..-.... ...+..+|.+|+....+ .....++.+|..+.. |+.+-+........+..
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE
Confidence 357888887777787775432211 22223466666654432 124579999987654 87764322122223344
Q ss_pred EECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECC-EEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 647 ALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NMG-KLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 647 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~-~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
..++++++.+..++ ...++.+|+....-..+. ++......++.. -++ .+++... +. ..-.+++.||..+++.
T Consensus 327 ~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d~~~l~~~~s-s~-~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 327 IVGGHLSLEYLKDA---TSEVRVATLKGKPVRTVQ-LPGVGAASNLMGLEDLDDAYYVFT-SF-TTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EETTEEEEEEEETT---EEEEEEEETTCCEEEECC-CSSSSEECCCBSCTTCSEEEEEEE-ET-TEEEEEEEEETTTCCE
T ss_pred EECCEEEEEEEECC---EEEEEEEeCCCCeeEEec-CCCCeEEEEeecCCCCCEEEEEEc-CC-CCCCEEEEEECCCCcE
Confidence 45888888876554 357888887655444442 121111011111 133 4444321 11 1124789999988877
Q ss_pred EecC
Q psy10286 725 AFVA 728 (748)
Q Consensus 725 ~~~~ 728 (748)
+.+.
T Consensus 401 ~~l~ 404 (695)
T 2bkl_A 401 ELWA 404 (695)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6553
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.052 Score=55.32 Aligned_cols=224 Identities=9% Similarity=0.058 Sum_probs=114.0
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeE--EEccCCCCCcceeE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVW--NKVSPMCFKRSAVG 550 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~r~~~~ 550 (748)
....+..||+.+++.......+. ....++.. ++ .+|+.+..+ ..++.+|+.+++. ..+..-..++ ++
T Consensus 18 ~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~--~~ 88 (331)
T 3u4y_A 18 HLRRISFFSTDTLEILNQITLGY--DFVDTAITSDCSNVVVTSDFC-----QTLVQIETQLEPPKVVAIQEGQSSM--AD 88 (331)
T ss_dssp GGTEEEEEETTTCCEEEEEECCC--CEEEEEECSSSCEEEEEESTT-----CEEEEEECSSSSCEEEEEEECSSCC--CC
T ss_pred CCCeEEEEeCcccceeeeEEccC--CcceEEEcCCCCEEEEEeCCC-----CeEEEEECCCCceeEEecccCCCCc--cc
Confidence 34679999999998865543332 11233332 44 588776532 4799999988764 2222222222 21
Q ss_pred EEEE-CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCe-EEEEEC
Q psy10286 551 AAAL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDS-VERYDP 625 (748)
Q Consensus 551 ~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~-~~~yd~ 625 (748)
++.. ++ .+| .+...+ ....+..||+.+++....-+. ....+.++.. ++ .+|+.+..+ .. +..|+.
T Consensus 89 ~~~s~dg~~l~-~~~~~~--~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~-----~~~i~~~~~ 158 (331)
T 3u4y_A 89 VDITPDDQFAV-TVTGLN--HPFNMQSYSFLKNKFISTIPI--PYDAVGIAISPNGNGLILIDRSS-----ANTVRRFKI 158 (331)
T ss_dssp EEECTTSSEEE-ECCCSS--SSCEEEEEETTTTEEEEEEEC--CTTEEEEEECTTSSCEEEEEETT-----TTEEEEEEE
T ss_pred eEECCCCCEEE-EecCCC--CcccEEEEECCCCCeEEEEEC--CCCccceEECCCCCEEEEEecCC-----CceEEEEEE
Confidence 2332 44 566 433211 113799999998876443222 2222344443 44 577776542 23 666665
Q ss_pred CCCc-EEEc--cCCCCCCcceeEEEE-CC-EEEEEeccCCCccccEEEEEeCCCCcE-EEccCCCCCCcceEEEEE-CCE
Q psy10286 626 KTDE-WTSV--KPMLTKRCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDPITDEW-KMIASMNVMRSRVALVAN-MGK 698 (748)
Q Consensus 626 ~~~~-W~~~--~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~-~~~ 698 (748)
..+. .... ...+......+++.. ++ .+|+.+.. .+.+.+||+.+.+. ..+..++....-..++.. +++
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLI-----GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGS 233 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETT-----TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSS
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCC-----CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCC
Confidence 4322 1111 111111222233322 44 47777643 25799999987764 112222222222223332 444
Q ss_pred -EEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 699 -LWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 699 -l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
+|+..+. ...+.+||+++++.+.+
T Consensus 234 ~l~v~~~~-----~~~i~~~d~~~~~~~~~ 258 (331)
T 3u4y_A 234 TVYVLTES-----TVDVFNFNQLSGTLSFV 258 (331)
T ss_dssp EEEEECSS-----EEEEEEEETTTTEEEEE
T ss_pred EEEEEEcC-----CCEEEEEECCCCceeee
Confidence 6666541 23589999998887443
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.17 Score=51.46 Aligned_cols=210 Identities=16% Similarity=0.142 Sum_probs=109.4
Q ss_pred cceEEEEeCCCCceEE-ccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQM-AEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
-..+..+|..+++-.. +..-+.. -.+++.. ++..++.|+.+ ..+..||..+.+-...-.. ....-.+++.
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~g~~d-----g~v~i~~~~~~~~~~~~~~-~~~~v~~~~~ 172 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVD--AWTLAFSPDSQYLATGTHV-----GKVNIFGVESGKKEYSLDT-RGKFILSIAY 172 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTC--CCCEEECTTSSEEEEECTT-----SEEEEEETTTCSEEEEEEC-SSSCEEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCcc--EEEEEECCCCCEEEEEcCC-----CcEEEEEcCCCceeEEecC-CCceEEEEEE
Confidence 3568888888775432 2111111 1122222 66677777643 4678888877653221111 1111122222
Q ss_pred E-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcc-eEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 L-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSA-GGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
. +++.++.|+.+ ..+..||..+.+-... +...... .+++. -++.+++.|+.++ .+..||..+.+.
T Consensus 173 spdg~~lasg~~d-----g~i~iwd~~~~~~~~~--~~~h~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd~~~~~~ 240 (321)
T 3ow8_A 173 SPDGKYLASGAID-----GIINIFDIATGKLLHT--LEGHAMPIRSLTFSPDSQLLVTASDDG-----YIKIYDVQHANL 240 (321)
T ss_dssp CTTSSEEEEEETT-----SCEEEEETTTTEEEEE--ECCCSSCCCEEEECTTSCEEEEECTTS-----CEEEEETTTCCE
T ss_pred CCCCCEEEEEcCC-----CeEEEEECCCCcEEEE--EcccCCceeEEEEcCCCCEEEEEcCCC-----eEEEEECCCcce
Confidence 2 67777888765 3688899888764222 1111111 12222 2677778887654 588899887654
Q ss_pred EEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCC
Q psy10286 631 TSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYD 706 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 706 (748)
... +.........+.+ ++..++.||.+ ..+.+||..+.+-.. .+.........+.. +++.++.||.+
T Consensus 241 ~~~--~~~h~~~v~~~~~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 241 AGT--LSGHASWVLNVAFCPDDTHFVSSSSD-----KSVKVWDVGTRTCVH--TFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE--EECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEE--EcCCCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCEEEE--EEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 332 1111112222333 56777788765 368889987764322 22112222222333 56677777754
Q ss_pred CCCCCCeEEEEeC
Q psy10286 707 GVSNLPTVEVYDP 719 (748)
Q Consensus 707 ~~~~~~~v~~yd~ 719 (748)
+ .|.+||.
T Consensus 312 ~-----~i~vwd~ 319 (321)
T 3ow8_A 312 Q-----EIHIYDC 319 (321)
T ss_dssp C-----CEEEEEC
T ss_pred C-----eEEEEeC
Confidence 3 4777774
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=1.3 Score=50.65 Aligned_cols=237 Identities=10% Similarity=0.005 Sum_probs=125.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCC-----------CCCCeEEEEECCCCeEE--EccCC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGS-----------ERLSTVEEFDPVRRVWN--KVSPM 542 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-----------~~~~~v~~yd~~t~~W~--~~~~~ 542 (748)
..++.+|..+++...... .... ..+.+.. +|+-++++..... .....+++++..+.+.. .+...
T Consensus 151 ~~i~v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~ 228 (710)
T 2xdw_A 151 VTIKFMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF 228 (710)
T ss_dssp EEEEEEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC
T ss_pred EEEEEEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc
Confidence 479999999998765421 1111 1122333 5544444433322 23456999999887531 22121
Q ss_pred C-CCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCC------C--eEEEccCCCCCCcceEEEEECCEEEEEccCC
Q psy10286 543 C-FKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDK------D--QWRIVKSMQKHRSAGGVIAFDSYVYALGGHD 612 (748)
Q Consensus 543 ~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~------~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 612 (748)
+ .+....+.... +|+..+++...+....+.++.+|..+ . .+..+..-.... .......++.+|+.+..+
T Consensus 229 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRH 307 (710)
T ss_dssp TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTT
T ss_pred CCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCC
Confidence 2 22222333332 55544444322222246899999876 4 577665432221 122233467888887643
Q ss_pred CCcccCeEEEEECCCC---cEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCc-EEEccCCCCCC
Q psy10286 613 GLSIFDSVERYDPKTD---EWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDE-WKMIASMNVMR 687 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r 687 (748)
+ ....++.+|..+. .|+.+.+-.......++... ++.+++....++ ...++++|+.+++ ...+.. + .
T Consensus 308 ~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g---~~~l~~~~~~~g~~~~~l~~-~--~ 379 (710)
T 2xdw_A 308 S--PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDV---KNTLQLHDLATGALLKIFPL-E--V 379 (710)
T ss_dssp C--TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETT---EEEEEEEETTTCCEEEEECC-C--S
T ss_pred C--CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECC---EEEEEEEECCCCCEEEecCC-C--C
Confidence 2 2457999998875 58877433221222334445 778887776544 3578999985554 444432 2 1
Q ss_pred cceEEEEE--CC-EEEEEe-CCCCCCCCCeEEEEeCCCCc--eEec
Q psy10286 688 SRVALVAN--MG-KLWAIG-GYDGVSNLPTVEVYDPSTDS--WAFV 727 (748)
Q Consensus 688 ~~~~~~~~--~~-~l~v~G-G~~~~~~~~~v~~yd~~~~~--W~~~ 727 (748)
.....+.. ++ .+++.. +.. .-.+++.||+.+++ ++.+
T Consensus 380 ~~v~~~~~s~d~~~l~~~~ss~~---~P~~i~~~d~~tg~~~~~~l 422 (710)
T 2xdw_A 380 GSVVGYSGQKKDTEIFYQFTSFL---SPGIIYHCDLTKEELEPRVF 422 (710)
T ss_dssp SEEEEEECCTTCSEEEEEEECSS---CCCEEEEEETTSSSCCCEEE
T ss_pred ceEEEEecCCCCCEEEEEEeCCC---CCCEEEEEECCCCccceEEe
Confidence 11222222 33 454432 322 23579999998877 6544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.17 Score=51.19 Aligned_cols=220 Identities=12% Similarity=0.080 Sum_probs=115.2
Q ss_pred cceEEEEeCCCCce----EEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCccee-
Q psy10286 476 LSTVEVFDPLVGRW----QMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAV- 549 (748)
Q Consensus 476 ~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~- 549 (748)
-..+..||..++.. ..+........-.+++.. ++..++.|+.+ ..+..||..+.++.....+.......
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACY 145 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-----CcEEEEECCCCCcceeeecccCCCceE
Confidence 35678888876542 111111111122222332 56666777643 47889999988754443322222222
Q ss_pred EEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 550 GAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 550 ~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
+++.. +++.++.|+.+ ..+..||..+.+....-..... .-.+++.. ++..++.|+.+ ..+..||..+
T Consensus 146 ~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~ 214 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLD-----NTVRSWDLRE 214 (337)
T ss_dssp EEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETT-----SEEEEEETTT
T ss_pred EEEECCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecC-----CcEEEEECCC
Confidence 22222 66677777754 3588999988764333211111 11222222 56667777753 3689999887
Q ss_pred CcEEEccCCCCCCcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCC
Q psy10286 628 DEWTSVKPMLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGY 705 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~ 705 (748)
.+-...-.. ...-.+++. -++..+++|+.+ ..+.+||..+..-..+.... ..-.++... ++++++.|+.
T Consensus 215 ~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~-----~~i~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 215 GRQLQQHDF--TSQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDKYQLHLHE--SCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp TEEEEEEEC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCEEEECCCS--SCEEEEEECTTSSEEEEEET
T ss_pred CceEeeecC--CCceEEEEECCCCCEEEEEcCC-----CcEEEEECCCCCeEEEcCCc--cceeEEEECCCCCEEEEecC
Confidence 754333221 111222222 256677777654 36888998876544332211 111222222 5677777774
Q ss_pred CCCCCCCeEEEEeCCCCceE
Q psy10286 706 DGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~W~ 725 (748)
+ ..+.+||..++.-.
T Consensus 286 d-----g~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 286 D-----NLLNAWRTPYGASI 300 (337)
T ss_dssp T-----SEEEEEETTTCCEE
T ss_pred C-----CcEEEEECCCCeEE
Confidence 3 36889998877544
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.093 Score=54.78 Aligned_cols=280 Identities=10% Similarity=-0.084 Sum_probs=136.1
Q ss_pred cceEeecCCCCceeecccccc---cceEEecccc-cccCCCccceEEEEeCCCCceEEccCCCcccceeEEEE--ECCEE
Q psy10286 438 STVEVFDPLVGRWQMAEEETL---SNAVISTKSC-LTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAV--MKNRL 511 (748)
Q Consensus 438 ~~~~~y~~~~~~W~~~~~~~~---~~~~~~~~~~-~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i 511 (748)
..++.+|..++....+..... .....+.++. +... ..-..++.+|..+++-..+...+.......... -++..
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~-~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~ 138 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV-KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTK 138 (388)
T ss_dssp CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE-ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSE
T ss_pred ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE-eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCe
Confidence 468889988887766543221 1223444332 2211 112478999999887766655544332222222 24443
Q ss_pred EEEc---cCC--------------CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCC-CCCCce
Q psy10286 512 YAFG---GYN--------------GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDG-VSSLNT 572 (748)
Q Consensus 512 yv~G---G~~--------------~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~-~~~~~~ 572 (748)
++.- +.. .......++.+|+.+.+-..+..-+ ....+....- +|+..++....+ ......
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (388)
T 3pe7_A 139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDAR 217 (388)
T ss_dssp EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcce
Confidence 3311 000 0112367999999988765554322 1222333333 555444433221 122468
Q ss_pred EEEEeCCCCeEEEccCCCCCCcceEEEE-ECCE-EEEEccCCCCcccCeEEEEECCCCcEEEccCCCCC------Cccee
Q psy10286 573 VECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSY-VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK------RCRLG 644 (748)
Q Consensus 573 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------r~~~~ 644 (748)
++.+|..+.....+............+. -+|+ |+......+. ....++.+|+.+.+-+.+...+.. ....
T Consensus 218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~- 295 (388)
T 3pe7_A 218 MWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGS-PDRFIYSADPETLENRQLTSMPACSHLMSNYDGS- 295 (388)
T ss_dssp EEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTC-CCEEEEEECTTTCCEEEEEEECCEEEEEECTTSS-
T ss_pred EEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCC-CcceEEEEecCCCceEEEEcCCCceeeeecCCCC-
Confidence 9999988777666544221111111122 2554 5443322221 112599999999887666543320 0001
Q ss_pred EEEECC-EEEEEe----ccCCCccccEEEEEeCCCCcEEEccCCCCC----------CcceEEEEECCE-EEEEeCCCCC
Q psy10286 645 VAALNN-KIYVCG----GYDGAIFLQSVEMYDPITDEWKMIASMNVM----------RSRVALVANMGK-LWAIGGYDGV 708 (748)
Q Consensus 645 ~~~~~~-~i~v~G----G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----------r~~~~~~~~~~~-l~v~GG~~~~ 708 (748)
...-++ .|++.. |+.. .....++.+|+.+.+-..+...+.. ........-+++ |++....++
T Consensus 296 ~~spdg~~l~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g- 373 (388)
T 3pe7_A 296 LMVGDGSDAPVDVQDDSGYKI-ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHG- 373 (388)
T ss_dssp EEEEEECCC-------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTS-
T ss_pred eEccCCCcceeEeeecccccc-CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCC-
Confidence 122233 333321 1111 1235899999999887776433321 111112223554 554443332
Q ss_pred CCCCeEEEEeCCCCceE
Q psy10286 709 SNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~W~ 725 (748)
...+|.+|.....|+
T Consensus 374 --~~~l~~~~l~~~~~~ 388 (388)
T 3pe7_A 374 --KPALYLATLPESVWK 388 (388)
T ss_dssp --SCEEEEEECCGGGGC
T ss_pred --ceeEEEEECChhccC
Confidence 357999999887763
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.2 Score=51.05 Aligned_cols=230 Identities=8% Similarity=-0.043 Sum_probs=115.9
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEE-ccCCCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~~ 553 (748)
...+++||+.++++..+...+ ...-.+++.. ++++|+.+.... .....+++||+.+.+... +........-..++.
T Consensus 65 ~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 65 EGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp TCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEE
T ss_pred CCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCCEEEEEEccCccCCcccceEE
Confidence 357899999988877653211 1222333333 678888754221 122579999998876553 222222222223333
Q ss_pred E-CCEEEEEeCCC-CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECCCC-
Q psy10286 554 L-NDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPKTD- 628 (748)
Q Consensus 554 ~-~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~- 628 (748)
. +|++|+..... .......++++|+.+.+...+..- .....+.+.. ++ .+|+.... ...+++||+.++
T Consensus 143 d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~-----~~~i~~~d~~~~g 215 (333)
T 2dg1_A 143 DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT-----ANRLHRIALEDDG 215 (333)
T ss_dssp CTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG-----GTEEEEEEECTTS
T ss_pred CCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC-----CCeEEEEEecCCC
Confidence 3 67888865421 112245799999987766554211 0111223332 44 58876533 247899998542
Q ss_pred -cEEEcc-----CCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCC-----cceEEEEE-
Q psy10286 629 -EWTSVK-----PMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR-----SRVALVAN- 695 (748)
Q Consensus 629 -~W~~~~-----~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~- 695 (748)
...... ..+....-.+++.- ++.+|+.... .+.+.+||++...-..+. .+... .-.+++..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~~~-~~~~~~g~~~~~~~~~~~~ 289 (333)
T 2dg1_A 216 VTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQIL-IPGRDEGHMLRSTHPQFIP 289 (333)
T ss_dssp SSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEEE-CTTGGGTCSCBCCEEEECT
T ss_pred cCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEEEE-cCCCccccccCcceEEECC
Confidence 332211 11111111222322 5778887532 247899998655444442 22110 11222322
Q ss_pred C-CEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 696 M-GKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 696 ~-~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+ +.||+.+..........++.+++.
T Consensus 290 dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 290 GTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp TSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCCEEEEEeCccCCCCCceEEEEecc
Confidence 3 477776543221122357777764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.067 Score=55.04 Aligned_cols=229 Identities=10% Similarity=0.085 Sum_probs=112.1
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-CcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-KRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~~~ 554 (748)
-.+|.+|..+++++.+........-..++.- ++++|+.+... ....++.||..+++++.+..... ...-..++..
T Consensus 18 i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~s 94 (347)
T 3hfq_A 18 IYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVD 94 (347)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEE
T ss_pred EEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecC---CCceEEEEEecCCcEEEeeeeecCCCCCEEEEEC
Confidence 3578889988888765432222111223322 67788776421 12578999998888766544221 1122233333
Q ss_pred -CC-EEEEEeCCCCCCCCceEEEEeCC-CCeEEEccCC------CCCCc----ceEEEEE-CCEEEEEccCCCCcccCeE
Q psy10286 555 -ND-KLYVCGGYDGVSSLNTVECYEPD-KDQWRIVKSM------QKHRS----AGGVIAF-DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 555 -~~-~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~------~~~r~----~~~~~~~-~~~iyv~GG~~~~~~~~~~ 620 (748)
+| .+|+.+..+ ..+..||.. +.+...+... |.+|. -+.++.. ++++|+.+..+ +.+
T Consensus 95 pdg~~l~~~~~~~-----~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~-----~~v 164 (347)
T 3hfq_A 95 EARQLVYSANYHK-----GTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS-----DKV 164 (347)
T ss_dssp TTTTEEEEEETTT-----TEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT-----TEE
T ss_pred CCCCEEEEEeCCC-----CEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC-----CEE
Confidence 55 577665322 467777764 3344333221 11111 1223332 56677765432 468
Q ss_pred EEEECC-CCcEEEccC--CCCCCcceeEEE-ECC-EEEEEeccCCCccccEEEEE--eCCCCcEEEcc---CCCCC---C
Q psy10286 621 ERYDPK-TDEWTSVKP--MLTKRCRLGVAA-LNN-KIYVCGGYDGAIFLQSVEMY--DPITDEWKMIA---SMNVM---R 687 (748)
Q Consensus 621 ~~yd~~-~~~W~~~~~--~p~~r~~~~~~~-~~~-~i~v~GG~~~~~~~~~v~~y--d~~~~~W~~~~---~~p~~---r 687 (748)
..||.. +.+...+.. .+....-..++. -++ .+|+.+..+ +.+.+| +..+.++..+. ..+.. .
T Consensus 165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 239 (347)
T 3hfq_A 165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS-----SQIASLKYDTQTGAFTQLGIVKTIPADYTAH 239 (347)
T ss_dssp EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESSCTTCCSC
T ss_pred EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC-----CEEEEEEecCCCCceEEeeeeeecCCCCCCC
Confidence 888887 555554432 111111112222 245 477765432 344455 44457765543 23321 1
Q ss_pred cceEEEEE--CC-EEEEEeCCCCCCCCCeEEEEeCCC-CceEecC
Q psy10286 688 SRVALVAN--MG-KLWAIGGYDGVSNLPTVEVYDPST-DSWAFVA 728 (748)
Q Consensus 688 ~~~~~~~~--~~-~l~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~ 728 (748)
.....+.+ ++ .||+.+.. .+.+.+||... ++++.+.
T Consensus 240 ~~~~~i~~spdG~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 240 NGAAAIRLSHDGHFLYVSNRG-----YNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp CEEEEEEECTTSCEEEEEEET-----TTEEEEEEECGGGCEEEEE
T ss_pred CcceeEEECCCCCEEEEEeCC-----CCEEEEEEECCCCcEEEeE
Confidence 12222222 45 47776542 24688888753 3455443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.55 Score=48.41 Aligned_cols=175 Identities=13% Similarity=0.171 Sum_probs=90.2
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE---CCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
++..++.|+.+ ..+..||..+.+-...-.-... .-.+.... ++..++.||.+ ..+..||..+.+..
T Consensus 165 ~~~~l~t~s~D-----~~v~lwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~~~ 233 (354)
T 2pbi_B 165 SDMQILTASGD-----GTCALWDVESGQLLQSFHGHGA-DVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQCV 233 (354)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEEECCSS-CEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCCEE
T ss_pred CCCEEEEEeCC-----CcEEEEeCCCCeEEEEEcCCCC-CeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCcEE
Confidence 44455556543 4688899888764322111111 11122221 35677788765 46888998887653
Q ss_pred EccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCC
Q psy10286 585 IVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDG 660 (748)
Q Consensus 585 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 660 (748)
..- ......-..+.+ ++..++.|+.++ .+..||..++.-...-...........+.+ ++.+++.|+.+
T Consensus 234 ~~~--~~h~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d- 305 (354)
T 2pbi_B 234 QAF--ETHESDVNSVRYYPSGDAFASGSDDA-----TCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND- 305 (354)
T ss_dssp EEE--CCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-
T ss_pred EEe--cCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-
Confidence 321 111111222222 567777787654 588899887653322111111222233333 57777777754
Q ss_pred CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCC
Q psy10286 661 AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDG 707 (748)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~ 707 (748)
..+.+||..+.+= +..+........++.+ +++.++.|+.++
T Consensus 306 ----~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~sgs~D~ 348 (354)
T 2pbi_B 306 ----YTINVWDVLKGSR--VSILFGHENRVSTLRVSPDGTAFCSGSWDH 348 (354)
T ss_dssp ----SCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSCEEEEETTS
T ss_pred ----CcEEEEECCCCce--EEEEECCCCcEEEEEECCCCCEEEEEcCCC
Confidence 3688899866542 2222212222222333 677777887553
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.23 Score=50.71 Aligned_cols=196 Identities=18% Similarity=0.274 Sum_probs=98.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCC-----eEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRR-----VWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
++.+++.|+.+ ..+..||.... .+..+..+......-.++.+ +++.++.||.+ ..+..||...
T Consensus 69 ~~~~las~s~D-----~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D-----~~v~iwd~~~ 138 (330)
T 2hes_X 69 HTSLLAAGSFD-----STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRD-----KSVWIWETDE 138 (330)
T ss_dssp TSSEEEEEETT-----SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETT-----SCEEEEECCT
T ss_pred CCCEEEEEeCC-----CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCC-----CEEEEEeccC
Confidence 56677777754 34667776432 12222211111111112222 67777777765 3577888742
Q ss_pred --CeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--C--CEE
Q psy10286 581 --DQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--N--NKI 652 (748)
Q Consensus 581 --~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~--~~i 652 (748)
..++.+..+......-..+.+ ++.+++.||.++ .+..+|..+..|..+..+.........+.+ + +..
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-----TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----eEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeE
Confidence 334443333222222222222 567777787754 477788777777665443322222222223 2 446
Q ss_pred EEEeccCCCccccEEEEEeCCC------CcEEEccCCCC--CCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 653 YVCGGYDGAIFLQSVEMYDPIT------DEWKMIASMNV--MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 653 ~v~GG~~~~~~~~~v~~yd~~~------~~W~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
++.||.++ .+.+||..+ ..|.....++. ...-.+++...+.+++.||.++ .+.+||..++.|
T Consensus 214 l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg-----~v~iw~~~~~~~ 283 (330)
T 2hes_X 214 LCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADG-----VLAVYEEVDGEW 283 (330)
T ss_dssp EEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTS-----CEEEEEEETTEE
T ss_pred EEEEeCCC-----eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCC-----EEEEEEcCCCce
Confidence 66777553 455555432 34665544432 1222233333455667777543 588899888888
Q ss_pred EecC
Q psy10286 725 AFVA 728 (748)
Q Consensus 725 ~~~~ 728 (748)
+.+.
T Consensus 284 ~~~~ 287 (330)
T 2hes_X 284 KVFA 287 (330)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6553
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.12 Score=54.34 Aligned_cols=216 Identities=10% Similarity=0.029 Sum_probs=105.2
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCc--------
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKR-------- 546 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r-------- 546 (748)
-..+..||........+.... ..-.+++.. ++..++.|+.+ ..+..||..+.+....-..+...
T Consensus 129 dg~i~i~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (425)
T 1r5m_A 129 NGELRLWNKTGALLNVLNFHR--APIVSVKWNKDGTHIISMDVE-----NVTILWNVISGTVMQHFELKETGGSSINAEN 201 (425)
T ss_dssp TSCEEEEETTSCEEEEECCCC--SCEEEEEECTTSSEEEEEETT-----CCEEEEETTTTEEEEEECCC-----------
T ss_pred CCeEEEEeCCCCeeeeccCCC--ccEEEEEECCCCCEEEEEecC-----CeEEEEECCCCcEEEEeeccccCccceeecc
Confidence 346778884433333332211 111223332 55666666643 35788898887654432222111
Q ss_pred ------ceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCe
Q psy10286 547 ------SAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDS 619 (748)
Q Consensus 547 ------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 619 (748)
...+++...+..++.|+.+ ..+..||..+.+-...-.. ....-.+++.. ++..++.|+.++ .
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~-----~ 270 (425)
T 1r5m_A 202 HSGDGSLGVDVEWVDDDKFVIPGPK-----GAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDG-----T 270 (425)
T ss_dssp ----CCCBSCCEEEETTEEEEECGG-----GCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETTS-----C
T ss_pred ccCCcceeeEEEEcCCCEEEEEcCC-----CeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCCC-----E
Confidence 0222333333345666644 4688899877542111110 11111222332 566677777543 5
Q ss_pred EEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--C
Q psy10286 620 VERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--M 696 (748)
Q Consensus 620 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 696 (748)
+..||..+.+....-.. ....-.+++.. ++ .++.|+.+ ..+.+||..+.+-... +.........+.+ +
T Consensus 271 i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d-----~~i~i~d~~~~~~~~~--~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 271 LRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMD-----GSVRLWSLKQNTLLAL--SIVDGVPIFAGRISQD 341 (425)
T ss_dssp EEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETT-----SEEEEEETTTTEEEEE--EECTTCCEEEEEECTT
T ss_pred EEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCC-----CcEEEEECCCCcEeEe--cccCCccEEEEEEcCC
Confidence 88888776542211110 11112233333 45 66667654 4789999877653332 1111122222222 5
Q ss_pred CEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 697 GKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 697 ~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+++++.|+.++ .+.+||..+..
T Consensus 342 ~~~l~~~~~dg-----~i~i~~~~~~~ 363 (425)
T 1r5m_A 342 GQKYAVAFMDG-----QVNVYDLKKLN 363 (425)
T ss_dssp SSEEEEEETTS-----CEEEEECHHHH
T ss_pred CCEEEEEECCC-----eEEEEECCCCc
Confidence 77777777543 58888886654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.8 Score=46.54 Aligned_cols=226 Identities=12% Similarity=0.079 Sum_probs=124.5
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCC--eEEEccC-C-----CCCc-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRR--VWNKVSP-M-----CFKR- 546 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~-~-----~~~r- 546 (748)
..+..+|+.+++.........-..-+++++. ++.+|+.... ...+.+||+... .-..+.. . ....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 4689999988776433221111122344443 6789987653 357999998765 1122211 0 1111
Q ss_pred ceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-------CCCCc-ceEEEEE-C-CEEEEEccCCCC
Q psy10286 547 SAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-------QKHRS-AGGVIAF-D-SYVYALGGHDGL 614 (748)
Q Consensus 547 ~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-------~~~r~-~~~~~~~-~-~~iyv~GG~~~~ 614 (748)
.-.++++. ++.+|+..+.. ...+.+||+....-..+... +.... -+++++. + +.||+....
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--- 216 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--- 216 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT---
T ss_pred CCcEEEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC---
Confidence 22344444 68999997521 25789999765544433211 11111 2344443 4 899998765
Q ss_pred cccCeEEEEECCCCcEEEccCCC-CCCcceeEEEECCEEEEEeccCC--CccccEEEEEeCCCCcEEEc-cCCCCCCc-c
Q psy10286 615 SIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAALNNKIYVCGGYDG--AIFLQSVEMYDPITDEWKMI-ASMNVMRS-R 689 (748)
Q Consensus 615 ~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~--~~~~~~v~~yd~~~~~W~~~-~~~p~~r~-~ 689 (748)
.+.+.+||+.+.+....-..+ ......+++...+.+|+..|... ......+..+|..+.+.... +..+.... -
T Consensus 217 --~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p 294 (329)
T 3fvz_A 217 --NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMP 294 (329)
T ss_dssp --TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSE
T ss_pred --CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCe
Confidence 357999999877665432211 22222344444577888777422 22345799999888776553 32222222 2
Q ss_pred eEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 690 VALVAN-MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 690 ~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
.+++.. +|.|||....+ +.|.+|++..
T Consensus 295 ~~ia~~~dG~lyvad~~~-----~~I~~~~~~~ 322 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHT-----NTVWKFTLTE 322 (329)
T ss_dssp EEEEECTTSEEEEEESSS-----CCEEEEEEEE
T ss_pred eEEEECCCCCEEEEECCC-----CEEEEEeCCc
Confidence 333333 67899987533 4688888753
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.38 Score=50.57 Aligned_cols=218 Identities=10% Similarity=0.066 Sum_probs=111.0
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEE-EccCCCCCcceeEE
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWN-KVSPMCFKRSAVGA 551 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~r~~~~~ 551 (748)
..-..+..||..+++-...-. .....-.+++.. ++.+++.|+.+ ..+..||..+.+-. .+.. ....-.++
T Consensus 116 ~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~--h~~~v~~~ 187 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQD-----MQLKIWSVKDGSNPRTLIG--HRATVTDI 187 (420)
T ss_dssp ETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCCCEEEEC--CSSCEEEE
T ss_pred ECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCC-----CeEEEEeCCCCcCceEEcC--CCCcEEEE
Confidence 334568889988765433311 111112233333 56677777754 46888998765421 1111 11111223
Q ss_pred EEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcc-eEEEE----------------------ECCEEE
Q psy10286 552 AAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSA-GGVIA----------------------FDSYVY 606 (748)
Q Consensus 552 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~-~~~~~----------------------~~~~iy 606 (748)
+.. ++..++.|+.+ ..+..||..+.+-...-... .+... .+++. -++..+
T Consensus 188 ~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 188 AIIDRGRNVLSASLD-----GTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEETTTTEEEEEETT-----SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEE
T ss_pred EEcCCCCEEEEEcCC-----CcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEE
Confidence 333 66666777755 35788898877533221111 11111 11111 256777
Q ss_pred EEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCE-EEEEeccCCCccccEEEEEeCCCCcE--EEcc
Q psy10286 607 ALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNK-IYVCGGYDGAIFLQSVEMYDPITDEW--KMIA 681 (748)
Q Consensus 607 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W--~~~~ 681 (748)
+.|+.++ .+..||..+.+-...-..... .....+.+ ++. +++.|+.+ ..+.+||..+..- ..+.
T Consensus 263 ~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~ 331 (420)
T 3vl1_A 263 IAGHVSG-----VITVHNVFSKEQTIQLPSKFT-CSCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSPECPVGEFL 331 (420)
T ss_dssp EEEETTS-----CEEEEETTTCCEEEEECCTTS-SCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCTTSCSEEEE
T ss_pred EEEcCCC-----eEEEEECCCCceeEEcccccC-CCceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCCcCchhhhh
Confidence 7777643 588999887653322111111 11222333 344 77777754 4788999877531 2221
Q ss_pred CCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 682 SMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 682 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
.. ....-.++...++++++.||.++ .+.+||..+
T Consensus 332 ~~-~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~~ 365 (420)
T 3vl1_A 332 IN-EGTPINNVYFAAGALFVSSGFDT-----SIKLDIISD 365 (420)
T ss_dssp ES-TTSCEEEEEEETTEEEEEETTTE-----EEEEEEECC
T ss_pred cc-CCCCceEEEeCCCCEEEEecCCc-----cEEEEeccC
Confidence 11 11122233445788888888543 577777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.18 Score=58.61 Aligned_cols=218 Identities=13% Similarity=0.041 Sum_probs=111.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..+..||..+++....-... ...-.+++.. ++..+++||.+ ..+.+||..+++....-.-.. ..-.+++..
T Consensus 35 g~v~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~-~~v~~~~~s~ 107 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQVT-ETPVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVVDFEAHP-DYIRSIAVHP 107 (814)
T ss_dssp SEEEEEETTTTEEEEEEECC-SSCEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEEEEECCS-SCEEEEEECS
T ss_pred CEEEEEECCCCceEEEEecC-CCcEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEecCC-CCEEEEEEeC
Confidence 46888888877543321111 1111222222 56667777743 468899988876543221111 111222222
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
++...+.|+.+ ..+..||..++ .....-. .....-.+++.. ++..++.|+.++ .+..||..+..-.
T Consensus 108 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg-----~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 108 TKPYVLSGSDD-----LTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQSTPN 176 (814)
T ss_dssp SSSEEEEEETT-----SEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTS-----EEEEEETTCSSCS
T ss_pred CCCEEEEEcCC-----CEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcce
Confidence 56666667644 46788888765 3222211 111111223333 466777777643 6888988654322
Q ss_pred EccCCCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCC
Q psy10286 632 SVKPMLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYD 706 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 706 (748)
..-..........++.. ++..++.|+.+ ..+.+||..+.+-... +.........+.. ++.+++.||.+
T Consensus 177 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d 249 (814)
T 3mkq_A 177 FTLTTGQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPTLPIIISGSED 249 (814)
T ss_dssp EEEECCCTTCCCEEEECCSTTCCEEEEECTT-----SEEEEEETTTTEEEEE--EECCSSCEEEEEECSSSSEEEEEETT
T ss_pred eEEecCCCCCEEEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEEE--EcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 11111111111222222 66777788754 3788999877653221 1111122222222 56677777754
Q ss_pred CCCCCCeEEEEeCCCCce
Q psy10286 707 GVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W 724 (748)
+ .+.+||..+.+-
T Consensus 250 g-----~v~vwd~~~~~~ 262 (814)
T 3mkq_A 250 G-----TLKIWNSSTYKV 262 (814)
T ss_dssp S-----CEEEEETTTCSE
T ss_pred C-----eEEEEECCCCcE
Confidence 3 588888877543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.18 Score=53.46 Aligned_cols=257 Identities=13% Similarity=0.131 Sum_probs=121.4
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeec-cc--ccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCc
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EE--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSM 497 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~ 497 (748)
++.+++.||.++ ++..||..++..... .. ..+....+..++.....|..-..+..||..+.+-.. .+..
T Consensus 119 ~~~~l~s~s~Dg------~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--~~~~ 190 (410)
T 1vyh_C 119 VFSVMVSASEDA------TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHG 190 (410)
T ss_dssp SSSEEEEEESSS------CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCC
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcC
Confidence 345667776532 577888776654321 11 111112223333333333333456777776654322 2221
Q ss_pred ccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceE
Q psy10286 498 LRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 498 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 573 (748)
.......+.+ ++..++.||.+ ..+..||..++.-...-. ........+.. ++.+++.||.+ ..+
T Consensus 191 h~~~V~~v~~~p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~~--~h~~~v~~~~~~~~g~~l~s~s~D-----~~v 258 (410)
T 1vyh_C 191 HDHNVSSVSIMPNGDHIVSASRD-----KTIKMWEVQTGYCVKTFT--GHREWVRMVRPNQDGTLIASCSND-----QTV 258 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----SEEEEEETTTCCEEEEEE--CCSSCEEEEEECTTSSEEEEEETT-----SCE
T ss_pred CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEe--CCCccEEEEEECCCCCEEEEEcCC-----CeE
Confidence 1112222222 56667777754 468889988775332111 11111122222 67777888755 357
Q ss_pred EEEeCCCCeEEEccCCCCCCcceEEEE----------------------ECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 574 ECYEPDKDQWRIVKSMQKHRSAGGVIA----------------------FDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 574 ~~yd~~~~~W~~~~~~~~~r~~~~~~~----------------------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
..||..+......- ......-.++. ..+.+++.|+.+ ..+..||..+..-.
T Consensus 259 ~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~~~~~~ 331 (410)
T 1vyh_C 259 RVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCL 331 (410)
T ss_dssp EEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEE
T ss_pred EEEECCCCceeeEe--cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECCCCceE
Confidence 77887776543211 00000001111 125566777664 36888998776422
Q ss_pred EccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCc-EEEccCCCCCCcceEEEEE--CCEEEEEeCCC
Q psy10286 632 SVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDE-WKMIASMNVMRSRVALVAN--MGKLWAIGGYD 706 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 706 (748)
. .+.........+.+ +++.++.||.+ ..|.+||..+.+ ...+.. ......++.+ ++.+++.||.+
T Consensus 332 ~--~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~i~vwd~~~~~~~~~~~~---h~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 332 M--TLVGHDNWVRGVLFHSGGKFILSCADD-----KTLRVWDYKNKRCMKTLNA---HEHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp E--EEECCSSCEEEEEECSSSSCEEEEETT-----TEEEEECCTTSCCCEEEEC---CSSCEEEEEECSSSSCEEEEETT
T ss_pred E--EEECCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCceEEEEcC---CCCcEEEEEEcCCCCEEEEEeCC
Confidence 1 11111111222223 56667777754 468888886643 222211 1111222222 45667777754
Q ss_pred CCCCCCeEEEEeC
Q psy10286 707 GVSNLPTVEVYDP 719 (748)
Q Consensus 707 ~~~~~~~v~~yd~ 719 (748)
+ .|.+||.
T Consensus 402 ~-----~i~vW~~ 409 (410)
T 1vyh_C 402 Q-----TVKVWEC 409 (410)
T ss_dssp S-----EEEEEC-
T ss_pred C-----cEEEEeC
Confidence 3 4666653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.6 Score=53.00 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=74.0
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC--------cceeEEEEECCEEEEEeCCCCCCCCceE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK--------RSAVGAAALNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (748)
-++.++.||+... ...++.+|..|.+ |+.-...+.. ....+.+..+++||+... -..+
T Consensus 73 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~------dg~l 140 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGRL 140 (677)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC------CCEE
Confidence 3567999999865 2468999998875 8875443211 112345567889988643 1479
Q ss_pred EEEeCCCCe--EEEccC-CCC--CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEc
Q psy10286 574 ECYEPDKDQ--WRIVKS-MQK--HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSV 633 (748)
Q Consensus 574 ~~yd~~~~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 633 (748)
..+|..+++ |+.-.. -+. .....+.++.++.+|+..+.........++.||..+.+ |+.-
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 999998775 877543 111 11223445568888876543222234679999998775 8764
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.1 Score=54.07 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=104.2
Q ss_pred ceEEEEeCCCCceEEccCCC---cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMS---MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+..||..+++-....... ....-.+++.. ++..++.|+.+ ..+..||..+++-...-..... .-.+++
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~~~~~~~h~~-~v~~v~ 188 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAVLKSYNAHSS-EVNCVA 188 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCCCC-CEEEEE
Confidence 46778887766433222111 01111222222 66777788754 3588899988764332111111 112223
Q ss_pred EE-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE---CCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 553 AL-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF---DSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 553 ~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
.. + +.+++.||.+ ..+..||..+.+-...............+.+ ++.+++.|+.++ .+..||..+
T Consensus 189 ~s~~~~~~~~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~~~ 258 (357)
T 4g56_B 189 ACPGKDTIFLSCGED-----GRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNIKN 258 (357)
T ss_dssp ECTTCSSCEEEEETT-----SCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEESSC
T ss_pred EccCCCceeeeeccC-----CceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc-----ceeEEECCC
Confidence 32 3 3567777755 3577888876653222122111222223332 456777887643 588889876
Q ss_pred CcEEEccCCCCCCcceeEEEE--C-CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE--ECCEEEEE
Q psy10286 628 DEWTSVKPMLTKRCRLGVAAL--N-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA--NMGKLWAI 702 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~ 702 (748)
.+-.. .+.........+.+ + +++++.|+.+ ..|.+||..+.+-... +.....-.+++. .++++++.
T Consensus 259 ~~~~~--~~~~~~~~v~~l~~sp~~~~~lasgs~D-----~~i~iwd~~~~~~~~~--~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 259 PDSAQ--TSAVHSQNITGLAYSYHSSPFLASISED-----CTVAVLDADFSEVFRD--LSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp GGGCE--EECCCSSCEEEEEECSSSSCCEEEEETT-----SCEEEECTTSCEEEEE--CCCSSCEEEEEECSSSTTEEEE
T ss_pred CcEeE--EEeccceeEEEEEEcCCCCCEEEEEeCC-----CEEEEEECCCCcEeEE--CCCCCCEEEEEEeCCCCCEEEE
Confidence 54211 11111122222333 3 4567777754 3688899888764433 211111122332 36788888
Q ss_pred eCCCCCCCCCeEEEEeCCC
Q psy10286 703 GGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~ 721 (748)
||.++ .|.+||..+
T Consensus 330 ~s~Dg-----~v~iW~~~~ 343 (357)
T 4g56_B 330 VGWDH-----KVLHHHLPS 343 (357)
T ss_dssp EETTS-----CEEEEECC-
T ss_pred EcCCC-----eEEEEECCC
Confidence 88654 578888654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=96.51 E-value=0.23 Score=51.79 Aligned_cols=184 Identities=11% Similarity=0.055 Sum_probs=90.8
Q ss_pred cceEEEEeCCCCc------eEEccCCCcc---cceeEEEEE-----CCEE-EEEccCCCCCCCCeEEEEECCC------C
Q psy10286 476 LSTVEVFDPLVGR------WQMAEAMSML---RSRVGVAVM-----KNRL-YAFGGYNGSERLSTVEEFDPVR------R 534 (748)
Q Consensus 476 ~~~~~~yd~~~~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~v~~yd~~t------~ 534 (748)
-..+..||..+++ +..+...+.. ..-.+++.. ++.. ++.|+.+ ..+..||..+ .
T Consensus 90 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~ 164 (397)
T 1sq9_A 90 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTYIWKFHPFADESNS 164 (397)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEEEEEEESSSSHHHH
T ss_pred CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEEEEeCCcccccccc
Confidence 3567888877766 6666544311 122233333 4555 7777754 3466676655 2
Q ss_pred e---EEEccCC--------CCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-C-C---CCcceE
Q psy10286 535 V---WNKVSPM--------CFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-Q-K---HRSAGG 597 (748)
Q Consensus 535 ~---W~~~~~~--------~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~-~---~r~~~~ 597 (748)
+ |.....+ .....-.+++.. ++ +++.|+.+ ..+..||..+.+....-.. . . ...-.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 165 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred ceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCceeEEEeccccccccCCccce
Confidence 1 1110011 111112233333 56 77777754 4688999887764332211 0 0 111122
Q ss_pred EEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCC-----------CCcceeEEEE--CCEEEEEeccCCCcc
Q psy10286 598 VIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLT-----------KRCRLGVAAL--NNKIYVCGGYDGAIF 663 (748)
Q Consensus 598 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-----------~r~~~~~~~~--~~~i~v~GG~~~~~~ 663 (748)
++.. ++.+++.|+.++. ...+..||..+.+-...-..+. .......+.+ ++..++.|+.+
T Consensus 239 i~~~~~~~~l~~~~~d~~--~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 312 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNS--FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD---- 312 (397)
T ss_dssp EEECSSTTEEEEEEEETT--EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT----
T ss_pred EEECCCCCEEEEEecCCC--CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC----
Confidence 2222 5667777765311 1468899988765322211100 1222223333 56677777754
Q ss_pred ccEEEEEeCCCCcE
Q psy10286 664 LQSVEMYDPITDEW 677 (748)
Q Consensus 664 ~~~v~~yd~~~~~W 677 (748)
..+.+||..+.+-
T Consensus 313 -g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 313 -GKLRFWDVKTKER 325 (397)
T ss_dssp -SEEEEEETTTTEE
T ss_pred -CeEEEEEcCCCce
Confidence 4788999887653
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.22 Score=52.89 Aligned_cols=227 Identities=8% Similarity=-0.050 Sum_probs=119.6
Q ss_pred cceEeecCCCCceeecccc--cccceEEecccc-cccCC--CccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCE-
Q psy10286 438 STVEVFDPLVGRWQMAEEE--TLSNAVISTKSC-LTKAG--DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNR- 510 (748)
Q Consensus 438 ~~~~~y~~~~~~W~~~~~~--~~~~~~~~~~~~-~~~~g--~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~- 510 (748)
..++.+|.....-..+... ......+++++. +...+ .....++.+|..+++...+...+. ...+.+.. +++
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR--HNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS--CEEEEEECTTSSE
T ss_pred ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC--cccCEEEcCCCCE
Confidence 5788888765544443321 122223333332 21111 112479999999988776654332 12222222 454
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC
Q psy10286 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 511 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
|++.+..++ ...++.+|..+.+...+..-.. .....+.. +|+.+++++..+ ....++.+|..++.-..+...
T Consensus 237 la~~~~~~g---~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~spdg~~l~~~s~~~--g~~~i~~~d~~~~~~~~l~~~ 309 (415)
T 2hqs_A 237 LAFALSKTG---SLNLYVMDLASGQIRQVTDGRS--NNTEPTWFPDSQNLAFTSDQA--GRPQVYKVNINGGAPQRITWE 309 (415)
T ss_dssp EEEEECTTS---SCEEEEEETTTCCEEECCCCSS--CEEEEEECTTSSEEEEEECTT--SSCEEEEEETTSSCCEECCCS
T ss_pred EEEEEecCC---CceEEEEECCCCCEEeCcCCCC--cccceEECCCCCEEEEEECCC--CCcEEEEEECCCCCEEEEecC
Confidence 554554322 3579999999988766544221 11222222 565444444221 124789999988765444321
Q ss_pred CCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEE-ECCEEEEEeccCCCccccEE
Q psy10286 590 QKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 590 ~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v 667 (748)
.......+. -+|+..++++.++. ...++.+|+.+.+...+.... ...+.+. -+++.+++++.++. ...+
T Consensus 310 --~~~~~~~~~spdG~~l~~~~~~~g--~~~i~~~d~~~~~~~~l~~~~---~~~~~~~spdg~~l~~~s~~~~--~~~l 380 (415)
T 2hqs_A 310 --GSQNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLSSTF---LDETPSLAPNGTMVIYSSSQGM--GSVL 380 (415)
T ss_dssp --SSEEEEEEECTTSSEEEEEEECSS--CEEEEEEETTTCCEEECCCSS---SCEEEEECTTSSEEEEEEEETT--EEEE
T ss_pred --CCcccCeEECCCCCEEEEEECcCC--ceEEEEEECCCCCEEEecCCC---CcCCeEEcCCCCEEEEEEcCCC--ccEE
Confidence 111112222 25554444443221 347999999999887665332 2222222 25666666654332 2479
Q ss_pred EEEeCCCCcEEEccC
Q psy10286 668 EMYDPITDEWKMIAS 682 (748)
Q Consensus 668 ~~yd~~~~~W~~~~~ 682 (748)
+.+|........+..
T Consensus 381 ~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 381 NLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEETTSCCEEECCC
T ss_pred EEEECCCCcEEEeeC
Confidence 999998877776643
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.16 Score=53.00 Aligned_cols=234 Identities=10% Similarity=-0.038 Sum_probs=118.6
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
..++.+|..+++...+..............-+++..++++.. ..++.+|+.+.+-..+...+... ..++
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~~~~~~~~~~~~~~------~~~g 128 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE-----LNLMKVDLETLEEQVIYTVDEEW------KGYG 128 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECCTTE------EEEE
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC-----CcEEEEECCCCCcEEEEeccccc------CCCC
Confidence 468899999888777754332111101112244433333322 26899998887655554433321 1111
Q ss_pred EEEEEeC-------------CC--C----------CCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCE-EEEE
Q psy10286 557 KLYVCGG-------------YD--G----------VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSY-VYAL 608 (748)
Q Consensus 557 ~iyv~GG-------------~~--~----------~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~ 608 (748)
+.+++.. .. + ......++.+|+.+++...+..- .......... ++. |++.
T Consensus 129 ~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~--~~~~~~~~~sp~dg~~l~~~ 206 (396)
T 3c5m_A 129 TWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD--TAWLGHPIYRPFDDSTVGFC 206 (396)
T ss_dssp EEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE--SSCEEEEEEETTEEEEEEEE
T ss_pred CEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC--CcccccceECCCCCCEEEEE
Confidence 2122210 00 0 02335789999998887666432 1111222222 344 5444
Q ss_pred ccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCC
Q psy10286 609 GGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM 686 (748)
Q Consensus 609 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 686 (748)
...........++.+|..+..+..+.. ..+........+ +++.+++.+.........++.+|+.+.+...+...+.
T Consensus 207 ~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~- 284 (396)
T 3c5m_A 207 HEGPHDLVDARMWLVNEDGSNVRKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP- 284 (396)
T ss_dssp ECSCSSSCSCCCEEEETTSCCCEESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-
T ss_pred ecCCCCCCCceEEEEECCCCceeEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-
Confidence 321111122579999998888777654 211112222233 4553333332222222459999999888777654442
Q ss_pred CcceEEEEE-CCEEEEEeCCCC-----------CCCCCeEEEEeCCCCceEec
Q psy10286 687 RSRVALVAN-MGKLWAIGGYDG-----------VSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 687 r~~~~~~~~-~~~l~v~GG~~~-----------~~~~~~v~~yd~~~~~W~~~ 727 (748)
.. ....- +++++++++.+. ......++++|+.++..+.+
T Consensus 285 -~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (396)
T 3c5m_A 285 -CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL 335 (396)
T ss_dssp -EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred -CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence 11 22223 677776654220 11235799999988876554
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.53 Score=50.34 Aligned_cols=199 Identities=11% Similarity=0.020 Sum_probs=100.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEE--ccCCC-CCcceeEEEE-EC---CEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNK--VSPMC-FKRSAVGAAA-LN---DKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~--~~~~~-~~r~~~~~~~-~~---~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
++..++.|+.+ ..++.++..+..... ...+. ....-.+++. -+ ++.++.|+.+ ..+..||..+
T Consensus 160 ~~~~l~~~~~~-----g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~ 229 (450)
T 2vdu_B 160 DDTTVIIADKF-----GDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQ 229 (450)
T ss_dssp TSSEEEEEETT-----SEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESC
T ss_pred CCCEEEEEeCC-----CcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCC
Confidence 55666666542 457888876654221 00111 1111122222 26 7788888765 4678888776
Q ss_pred CeEEEc-cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC-----------------------
Q psy10286 581 DQWRIV-KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM----------------------- 636 (748)
Q Consensus 581 ~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~----------------------- 636 (748)
...... ..-........+.. ++..++.||.+ ..+..||..+.+....-..
T Consensus 230 ~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (450)
T 2vdu_B 230 CFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD-----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENN 303 (450)
T ss_dssp TTCEEEECCCCSSCEEEEEEC-STTEEEEEESS-----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------
T ss_pred CceeeeeecCCCCceEEEEEC-CCCEEEEEeCC-----CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccc
Confidence 543221 10011111122222 67777777754 3688999888764332110
Q ss_pred -CCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeC--C-CCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC---
Q psy10286 637 -LTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDP--I-TDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV--- 708 (748)
Q Consensus 637 -p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~--~-~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~--- 708 (748)
.......+++.. +++.+++|+.. ...+.+||. . ...+..+..+.....-.+++...+.+++..+....
T Consensus 304 ~~~~~~v~~i~~~~~~~~l~~~~~~----d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~ 379 (450)
T 2vdu_B 304 DIIEFAVSKIIKSKNLPFVAFFVEA----TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGV 379 (450)
T ss_dssp -CBCCCEEEEEECSSSSEEEEEETT----CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSS
T ss_pred ccceEEEEEEEEeCCCCEEEEEECC----CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCC
Confidence 001111122222 34444444321 256888887 3 34566655444443334555566778777654321
Q ss_pred -CCCCeEEEEeCCCCceEe
Q psy10286 709 -SNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 709 -~~~~~v~~yd~~~~~W~~ 726 (748)
...-.++.++.+++.|+.
T Consensus 380 ~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 380 QKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp CCCSEEEEEEETTTTEEEE
T ss_pred CCcceEEEEEEcCCCeEEE
Confidence 122267777888888853
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.95 Score=46.07 Aligned_cols=264 Identities=11% Similarity=0.080 Sum_probs=135.5
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc----c-ccceEEecccccccCCCccceEEEEeCCCCceEEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE----T-LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~----~-~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~ 495 (748)
.+.+|++|.. ..++.....-.+|...... . ...++....+..+..|.. ..+++-+-.-.+|+.+...
T Consensus 46 ~~~~~~~G~~-------g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-g~i~~S~DgG~tW~~~~~~ 117 (327)
T 2xbg_A 46 RHHGWLVGVN-------ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-PIMLHTTDGGQSWSQIPLD 117 (327)
T ss_dssp SSCEEEEETT-------TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-TEEEEESSTTSSCEECCCC
T ss_pred CCcEEEEcCC-------CeEEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-CeEEEECCCCCCceECccc
Confidence 4456776532 1244444455689876531 1 112232222333333322 2345444445689998643
Q ss_pred C-cccceeEEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCce
Q psy10286 496 S-MLRSRVGVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 496 ~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 572 (748)
. .+-..+.++. -++.+|+.|.. ..+++-+-.-.+|+.+.... +..-++++.. ++.+|++|.. ..
T Consensus 118 ~~~~~~~~~i~~~~~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~------G~ 184 (327)
T 2xbg_A 118 PKLPGSPRLIKALGNGSAEMITNV------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSR------GS 184 (327)
T ss_dssp TTCSSCEEEEEEEETTEEEEEETT------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETT------SS
T ss_pred cCCCCCeEEEEEECCCCEEEEeCC------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECC------Cc
Confidence 2 2222334443 36788887742 13555544556899886432 2233444444 5677776632 13
Q ss_pred EEEEe-CCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECC-CCcEEEccC--CCCCCcceeEEE
Q psy10286 573 VECYE-PDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPK-TDEWTSVKP--MLTKRCRLGVAA 647 (748)
Q Consensus 573 ~~~yd-~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~--~p~~r~~~~~~~ 647 (748)
+++-+ ....+|+.+.. +.+...+.++.. ++.+|+.+.. ..+++.+.. ..+|+.+.. ++.....++++.
T Consensus 185 ~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 185 FYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAY 257 (327)
T ss_dssp EEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEE
T ss_pred EEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCCcccCCcceEEEEe
Confidence 44433 33678998853 333444444443 6788877642 135555333 568987753 233222333333
Q ss_pred E-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCC-CCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 648 L-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM-NVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 648 ~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
. ++.+|++|+. ..+++-.-.-.+|+.+... +.+...+.++. -+++++++|. ++ .++.++. .|
T Consensus 258 ~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~-~G-----~i~~~~~---~~ 322 (327)
T 2xbg_A 258 RTPNEVWLAGGA------GALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQ-KG-----ILLRYVT---DL 322 (327)
T ss_dssp SSSSCEEEEEST------TCEEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECS-TT-----EEEEECC---CC
T ss_pred cCCCEEEEEeCC------CeEEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcC-Cc-----eEEEEcC---cc
Confidence 3 5788888863 2344433345789988532 22222344444 3677666653 22 5777764 46
Q ss_pred Eec
Q psy10286 725 AFV 727 (748)
Q Consensus 725 ~~~ 727 (748)
+..
T Consensus 323 ~~~ 325 (327)
T 2xbg_A 323 TAA 325 (327)
T ss_dssp TTC
T ss_pred cCC
Confidence 544
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.043 Score=57.19 Aligned_cols=234 Identities=14% Similarity=0.098 Sum_probs=104.1
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccccc-----ccceEEecccccccCCCccceEEEEeCCCCc-eEEccC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET-----LSNAVISTKSCLTKAGDSLSTVEVFDPLVGR-WQMAEA 494 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~-W~~~~~ 494 (748)
++.+++.|+.+ ..+..||..++.|....... +....+..++.....+..-..+..||..++. |.....
T Consensus 22 ~g~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~ 95 (377)
T 3dwl_C 22 QRTEFVTTTAT------NQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLV 95 (377)
T ss_dssp SSSEEECCCSS------SCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEE
T ss_pred CCCEEEEecCC------CEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeE
Confidence 44566666643 25778888887665544321 1112233333333333333568888888776 543332
Q ss_pred CCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCe-EEEccCCCC--CcceeEEEEE-CCEEEEEeCCCCCC
Q psy10286 495 MSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRV-WNKVSPMCF--KRSAVGAAAL-NDKLYVCGGYDGVS 568 (748)
Q Consensus 495 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~ 568 (748)
+.........+.. ++..++.|+.+ ..+..||..+.+ |.....+.. ...-.+++.. +++.++.|+.+
T Consensus 96 ~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--- 167 (377)
T 3dwl_C 96 LLRLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD--- 167 (377)
T ss_dssp CCCCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS---
T ss_pred ecccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC---
Confidence 2222222222222 56677777754 357778877654 322222222 1222233332 66777777755
Q ss_pred CCceEEEEeCCCCe----------------EEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcE-
Q psy10286 569 SLNTVECYEPDKDQ----------------WRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEW- 630 (748)
Q Consensus 569 ~~~~~~~yd~~~~~----------------W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W- 630 (748)
..+..||..+.. -+.+..+.....-.+++.. ++..++.|+.++ .+..||..+.+-
T Consensus 168 --~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~-----~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 168 --RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS-----SVTIAYPSAPEQP 240 (377)
T ss_dssp --SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT-----EEC-CEECSTTSC
T ss_pred --CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCCc
Confidence 356777765332 2222222111111122222 566777777643 577777766542
Q ss_pred -EEccCCCCCCcceeE--EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 631 -TSVKPMLTKRCRLGV--AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 631 -~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
..+..+......... ..-++++++.|+. +.+.+|+.....|....
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------~~~~~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWANESAIVAAGYN------YSPILLQGNESGWAHTR 288 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEETTEEEEEESS------SSEEEECCCC---CCSB
T ss_pred ceeeEeecCCCCceEEEEEcCCCCEEEEEcC------CcEEEEEeCCCceEEEe
Confidence 223222222222222 2337887777753 33456776666665543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.07 Score=54.23 Aligned_cols=232 Identities=15% Similarity=0.241 Sum_probs=114.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccce-eEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCc-ceeEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKR-SAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r-~~~~~ 551 (748)
..+..||..++....+..+...... .+++.. ++.+++.||.+ ..+..||..+.+|.....+.... .-.++
T Consensus 35 ~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~V~~v 109 (316)
T 3bg1_A 35 RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RKVIIWREENGTWEKSHEHAGHDSSVNSV 109 (316)
T ss_dssp TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SCEEEECCSSSCCCEEEEECCCSSCCCEE
T ss_pred CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CEEEEEECCCCcceEEEEccCCCCceEEE
Confidence 4577778776654333222211111 222222 25677777754 45888898887665443222111 11223
Q ss_pred EEE-C--CEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCcceEEEEE-------------------CCEEEEE
Q psy10286 552 AAL-N--DKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRSAGGVIAF-------------------DSYVYAL 608 (748)
Q Consensus 552 ~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~-------------------~~~iyv~ 608 (748)
+.. + +.+++.|+.+ ..+..||..+. .|.....+.........+.+ .+..++.
T Consensus 110 ~~~p~~~g~~lasgs~D-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 110 CWAPHDYGLILACGSSD-----GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp EECCTTTCSCEEEECSS-----SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred EECCCCCCcEEEEEcCC-----CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 332 3 5677778765 35667776654 46543322211111111111 1345666
Q ss_pred ccCCCCcccCeEEEEECC-CCcEEEccCCCCCCcceeEEEE--C----CEEEEEeccCCCccccEEEEEeCCC---CcEE
Q psy10286 609 GGHDGLSIFDSVERYDPK-TDEWTSVKPMLTKRCRLGVAAL--N----NKIYVCGGYDGAIFLQSVEMYDPIT---DEWK 678 (748)
Q Consensus 609 GG~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~~~~~~--~----~~i~v~GG~~~~~~~~~v~~yd~~~---~~W~ 678 (748)
||.++ .+..+|.. ...|..+..+.........+.+ + +.+++.|+.+ ..+.+||..+ ..|.
T Consensus 185 gs~D~-----~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D-----~~v~iw~~~~~~~~~~~ 254 (316)
T 3bg1_A 185 GGCDN-----LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD-----GRVFIWTCDDASSNTWS 254 (316)
T ss_dssp CBTTS-----BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT-----CEEEEEECSSTTCCCCB
T ss_pred ecCCC-----eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC-----CeEEEEEccCccccchh
Confidence 66643 35556655 3457666544332222233333 2 2667777765 3677887765 3332
Q ss_pred E--ccCCCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCC-CCceEecCCCCCCCc
Q psy10286 679 M--IASMNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPS-TDSWAFVAPMCAHEG 735 (748)
Q Consensus 679 ~--~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~~~~r~ 735 (748)
. +... ...-.+++. -++++++.||.++ .|.+|+.. .+.|..+..+..+-.
T Consensus 255 ~~~~~~~--~~~v~~v~~sp~g~~las~~~D~-----~v~lw~~~~~g~~~~~~~~~~~~~ 308 (316)
T 3bg1_A 255 PKLLHKF--NDVVWHVSWSITANILAVSGGDN-----KVTLWKESVDGQWVCISDVNKGQG 308 (316)
T ss_dssp CCEEEEC--SSCEEEEEECTTTCCEEEEESSS-----CEEEEEECTTSCEEEEEECC----
T ss_pred hhhhhcC--CCcEEEEEEcCCCCEEEEEcCCC-----eEEEEEECCCCcEEEeeeccCCCC
Confidence 1 1111 111122222 2577888887553 47777764 578998887776443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.42 Score=48.36 Aligned_cols=228 Identities=9% Similarity=0.035 Sum_probs=108.7
Q ss_pred ceEEEEeCC-CCceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECC--CCeEEEccCCCCCcceeEE
Q psy10286 477 STVEVFDPL-VGRWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPV--RRVWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~r~~~~~ 551 (748)
..+..||.. ++++..+...+....-..++.. ++ .+|+.+..+ ..+..|+.. ++++..+..++....-..+
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE-----FRVLAYRIAPDDGALTFAAESALPGSLTHI 89 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT-----TEEEEEEECTTTCCEEEEEEEECSSCCSEE
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCC-----CeEEEEEecCCCCceeeccccccCCCCcEE
Confidence 456777663 4555444333222222223332 44 466654421 456666665 7777765443322222333
Q ss_pred EEE-CC-EEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECC
Q psy10286 552 AAL-ND-KLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 552 ~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
+.. ++ .+|+.+..+ ..+..||...+ ........+....-+.++.. +..+|+.+.. ...+..||..
T Consensus 90 ~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~~ 159 (343)
T 1ri6_A 90 STDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-----QDRICLFTVS 159 (343)
T ss_dssp EECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-----GTEEEEEEEC
T ss_pred EEcCCCCEEEEEecCC-----CeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-----CCEEEEEEec
Confidence 333 44 466655422 45778887422 23333222222222333333 3467776533 2468999988
Q ss_pred C-CcEEEcc----CCCCCCcceeEEEE-CC-EEEEEeccCCCccccEEEEEeCC--CCcEEE---ccCCCCC---Ccce-
Q psy10286 627 T-DEWTSVK----PMLTKRCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDPI--TDEWKM---IASMNVM---RSRV- 690 (748)
Q Consensus 627 ~-~~W~~~~----~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~---~~~~p~~---r~~~- 690 (748)
+ .+...+. ..+....-..++.. ++ .+|+.+.. .+.+.+||.. +.++.. +...+.. ....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 234 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred CCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEecCCCCcEEEEeeccccCccccccCCcc
Confidence 7 6665432 11111111122222 34 57777643 2478888874 344432 3333332 1122
Q ss_pred EEEEE--CCEEEEEeCCCCCCCCCeEEEEeCC--CCceEecCC
Q psy10286 691 ALVAN--MGKLWAIGGYDGVSNLPTVEVYDPS--TDSWAFVAP 729 (748)
Q Consensus 691 ~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 729 (748)
.++.. +..||+.++.+ ..+.+||.. +++++.+..
T Consensus 235 ~i~~s~dg~~l~v~~~~~-----~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 235 DIHITPDGRHLYACDRTA-----SLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEECTTSSEEEEEETTT-----TEEEEEEECTTSCCEEEEEE
T ss_pred ceEECCCCCEEEEEecCC-----CEEEEEEEcCCCCceEEeee
Confidence 23332 34676665422 468888877 556665533
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.64 Score=51.59 Aligned_cols=119 Identities=13% Similarity=0.171 Sum_probs=72.0
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEEC-CCC--eEEEccCCCCC--------cceeEEEEECCEEEEEeCCCCCCCCce
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDP-VRR--VWNKVSPMCFK--------RSAVGAAALNDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~t~--~W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~ 572 (748)
-++.++.||+.... ...++.+|. .+. .|+.-...+.. ....+.+..+++||+..+ -..
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~ 126 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGH 126 (571)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSE
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC------CCE
Confidence 35679999997652 246999998 765 48875433211 112234567899988643 147
Q ss_pred EEEEeCCCCe--EEEccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEc
Q psy10286 573 VECYEPDKDQ--WRIVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSV 633 (748)
Q Consensus 573 ~~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 633 (748)
++.+|..+.+ |+.-..-+.. ....+-++.++.+|+-.+..+......++.||+.+.+ |+.-
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 8999998774 8764321111 1122334568998876542111123579999998764 8654
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.32 Score=48.86 Aligned_cols=215 Identities=14% Similarity=0.118 Sum_probs=106.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..+..+|..++.-...-..... .-.++... ++..++.|+.+ ..+..||..+++-...-. .....-.+++..
T Consensus 35 g~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~ 107 (304)
T 2ynn_A 35 GRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDD-----FRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHP 107 (304)
T ss_dssp SEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETT-----SEEEEEETTTCCEEEEEE-CCSSCEEEEEECS
T ss_pred CcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCC-----CEEEEEECCCCcEEEEEe-CCCCcEEEEEEcC
Confidence 4678888877653221111111 11122222 56667777754 468889988765322111 011112223332
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc-ceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCc--
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS-AGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDE-- 629 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-- 629 (748)
++.+++.|+.+ ..+..||..++. .....+..... -.+++.. ++.+++.|+.++ .+..||..+..
T Consensus 108 ~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~-----~v~iwd~~~~~~~ 176 (304)
T 2ynn_A 108 TKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-----TVKVWSLGQSTPN 176 (304)
T ss_dssp SSSEEEEEETT-----SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTS-----EEEEEETTCSSCS
T ss_pred CCCEEEEECCC-----CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCcc
Confidence 56677777755 357778876542 11111111111 1222222 456777887754 57888876542
Q ss_pred EEEccCCCCCCcceeEEEE----CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEe
Q psy10286 630 WTSVKPMLTKRCRLGVAAL----NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIG 703 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~G 703 (748)
..... ...+ ....+.+ ++..++.|+.+ ..|.+||..+.+-. ..+.........+.. ++.+++.|
T Consensus 177 ~~~~~--~~~~-~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~s~ 246 (304)
T 2ynn_A 177 FTLTT--GQER-GVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCV--ATLEGHMSNVSFAVFHPTLPIIISG 246 (304)
T ss_dssp EEEEC--CCTT-CEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEE--EEEECCSSCEEEEEECSSSSEEEEE
T ss_pred ceecc--CCcC-cEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccc--eeeCCCCCCEEEEEECCCCCEEEEE
Confidence 11111 0111 1122222 45667777754 47888998876422 222212222222332 56677778
Q ss_pred CCCCCCCCCeEEEEeCCCCce
Q psy10286 704 GYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 704 G~~~~~~~~~v~~yd~~~~~W 724 (748)
|.++ .|.+||..+.+-
T Consensus 247 s~Dg-----~i~iWd~~~~~~ 262 (304)
T 2ynn_A 247 SEDG-----TLKIWNSSTYKV 262 (304)
T ss_dssp ETTS-----CEEEEETTTCCE
T ss_pred cCCC-----eEEEEECCCCce
Confidence 7553 588888877553
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.34 Score=48.97 Aligned_cols=178 Identities=13% Similarity=0.230 Sum_probs=85.8
Q ss_pred ceEEEEeCCC--CceEEccCCCcccceeE-EEEE---CCEEEEEccCCCCCCCCeEEEEECCCC-------eEEEccCCC
Q psy10286 477 STVEVFDPLV--GRWQMAEAMSMLRSRVG-VAVM---KNRLYAFGGYNGSERLSTVEEFDPVRR-------VWNKVSPMC 543 (748)
Q Consensus 477 ~~~~~yd~~~--~~W~~~~~~~~~r~~~~-~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~-------~W~~~~~~~ 543 (748)
..+..||..+ ..+.....+........ ++.. ++.+++.|+.+ ..+..||..+. .|..+..+.
T Consensus 33 g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~v~vwd~~~~~~~~~~~~~~~~~~~~ 107 (351)
T 3f3f_A 33 QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----KTVKLWEEDPDQEECSGRRWNKLCTLN 107 (351)
T ss_dssp SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEECTTSCTTSSCSEEEEEEEC
T ss_pred CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----CeEEEEecCCCcccccccCcceeeeec
Confidence 3566666654 34444433322222222 2332 26777888754 35677777653 344433322
Q ss_pred CCccee-EEEEE-C--CEEEEEeCCCCCCCCceEEEEeCCCCe----EEEcc---CC--C-CC-C-cceEEEEE----CC
Q psy10286 544 FKRSAV-GAAAL-N--DKLYVCGGYDGVSSLNTVECYEPDKDQ----WRIVK---SM--Q-KH-R-SAGGVIAF----DS 603 (748)
Q Consensus 544 ~~r~~~-~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~---~~--~-~~-r-~~~~~~~~----~~ 603 (748)
...... +++.. + +..++.|+.+ ..+..||..+.+ |.... .+ . .. . ...+++.. ++
T Consensus 108 ~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 182 (351)
T 3f3f_A 108 DSKGSLYSVKFAPAHLGLKLACLGND-----GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSP 182 (351)
T ss_dssp CCSSCEEEEEECCGGGCSEEEEEETT-----CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSC
T ss_pred ccCCceeEEEEcCCCCCcEEEEecCC-----CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCC
Confidence 222222 22222 3 6677777754 467888876543 32111 11 1 11 1 11122221 36
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CC----EEEEEeccCCCccccEEEEEeCCC
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NN----KIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~----~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
..++.|+.++ .+..++........+..+.........+.+ ++ .+++.|+.++ .+.+||..+
T Consensus 183 ~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg-----~i~iwd~~~ 249 (351)
T 3f3f_A 183 EKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG-----RIRIFKITE 249 (351)
T ss_dssp CEEEEEETTE-----EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS-----CEEEEEEEE
T ss_pred cEEEEecCCC-----cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC-----eEEEEeCCC
Confidence 6777777643 345556666666554444333333333333 33 7888887654 355565543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.092 Score=54.11 Aligned_cols=179 Identities=18% Similarity=0.263 Sum_probs=98.1
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC--CCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC--FKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~--~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
++.+++.||.+ ..+..||..+++|.....+. ....-.+++.. +++.++.|+.+ ..+..||..++.+.
T Consensus 27 ~g~~las~~~D-----~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D-----~~v~iw~~~~~~~~ 96 (345)
T 3fm0_A 27 AGTLLASCGGD-----RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD-----ATTCIWKKNQDDFE 96 (345)
T ss_dssp TSSCEEEEETT-----SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEEECCC-EE
T ss_pred CCCEEEEEcCC-----CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC-----CcEEEEEccCCCeE
Confidence 56677777754 35778888888776433221 11222222222 67777888865 35677787777765
Q ss_pred EccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCC-cEEEccCCCCCCcceeEEEE--CCEEEEEeccC
Q psy10286 585 IVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTD-EWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYD 659 (748)
Q Consensus 585 ~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 659 (748)
.+..+......-..+.+ ++..++.|+.++ .+..+|..+. .+..+..+.........+.+ ++.+++.|+.+
T Consensus 97 ~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred EEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 55444322222222332 567777787654 4777877654 33333222222222223333 56777788765
Q ss_pred CCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCC
Q psy10286 660 GAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYD 706 (748)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 706 (748)
+ .+.+||..+..|..+..+.........+.. +++.++.|+.+
T Consensus 172 ~-----~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 172 D-----TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp S-----CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred C-----cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 3 578888888888765444322222222333 56677777754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.29 Score=48.93 Aligned_cols=215 Identities=13% Similarity=0.054 Sum_probs=114.4
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC----CcceeE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF----KRSAVG 550 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~----~r~~~~ 550 (748)
...+++||+.++ ....... . ..-.+++.. ++.+|+.... ...+.+||+.+++...+..... .+....
T Consensus 49 ~~~i~~~~~~~~-~~~~~~~-~-~~~~~l~~~~dg~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i 120 (296)
T 3e5z_A 49 QNRTWAWSDDGQ-LSPEMHP-S-HHQNGHCLNKQGHLIACSHG-----LRRLERQREPGGEWESIADSFEGKKLNSPNDV 120 (296)
T ss_dssp GTEEEEEETTSC-EEEEESS-C-SSEEEEEECTTCCEEEEETT-----TTEEEEECSTTCCEEEEECEETTEECCCCCCE
T ss_pred CCEEEEEECCCC-eEEEECC-C-CCcceeeECCCCcEEEEecC-----CCeEEEEcCCCCcEEEEeeccCCCCCCCCCCE
Confidence 357899999987 5544321 1 112333333 6788876531 2469999998888766532111 111222
Q ss_pred EEEECCEEEEE----eCCC------C--CCCCceEEEEeCCCCeEEEcc-CCCCCCcceEEEEE-CCEEEEEccCCCCcc
Q psy10286 551 AAALNDKLYVC----GGYD------G--VSSLNTVECYEPDKDQWRIVK-SMQKHRSAGGVIAF-DSYVYALGGHDGLSI 616 (748)
Q Consensus 551 ~~~~~~~iyv~----GG~~------~--~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 616 (748)
+..-+|++|+. |... . ......+++||+. ++...+. .+..+ .+++.. ++++++.+..
T Consensus 121 ~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~---~gi~~s~dg~~lv~~~~----- 191 (296)
T 3e5z_A 121 CLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP---NGLAFLPSGNLLVSDTG----- 191 (296)
T ss_dssp EECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE---EEEEECTTSCEEEEETT-----
T ss_pred EECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC---ccEEECCCCCEEEEeCC-----
Confidence 22237889986 4311 0 1113579999987 5544432 22111 233332 5665544433
Q ss_pred cCeEEEEECC-CCcE-EE--ccCCCCCCcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceE
Q psy10286 617 FDSVERYDPK-TDEW-TS--VKPMLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA 691 (748)
Q Consensus 617 ~~~~~~yd~~-~~~W-~~--~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (748)
...+++||+. +.+. .. +-..... .-.+++. -+|.||+..+ +.|.+||+.......+.. +.. -..
T Consensus 192 ~~~i~~~~~~~~g~~~~~~~~~~~~~~-~p~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~~-~~~--~~~ 260 (296)
T 3e5z_A 192 DNATHRYCLNARGETEYQGVHFTVEPG-KTDGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVLT-PQT--TSN 260 (296)
T ss_dssp TTEEEEEEECSSSCEEEEEEEECCSSS-CCCSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEEC-SSC--CCE
T ss_pred CCeEEEEEECCCCcCcCCCeEeeCCCC-CCCeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEEC-CCC--cee
Confidence 2478999886 4454 21 1111111 1123333 2678888772 579999998655544432 222 122
Q ss_pred EEEE--C-CEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 692 LVAN--M-GKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 692 ~~~~--~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
++.- + +.||+... ..++.|+++++.-+
T Consensus 261 ~~f~~~d~~~L~v~t~-------~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 261 LCFGGPEGRTLYMTVS-------TEFWSIETNVRGLE 290 (296)
T ss_dssp EEEESTTSCEEEEEET-------TEEEEEECSCCBCC
T ss_pred EEEECCCCCEEEEEcC-------CeEEEEEccccccc
Confidence 2221 2 36777653 36899999887644
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.26 Score=49.52 Aligned_cols=225 Identities=14% Similarity=0.131 Sum_probs=109.0
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeec-c--cccccceEEecccccccCCCccceEEEEeCCCCceEE-ccCCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-E--EETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQM-AEAMS 496 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~--~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~-~~~~~ 496 (748)
++..++.|+.+ .++..||..++.-... . ...+....+..++.....|..-..+..||..+++-.. +..
T Consensus 24 ~~~~l~s~~~d------g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-- 95 (304)
T 2ynn_A 24 TEPWVLTTLYS------GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-- 95 (304)
T ss_dssp SSSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CCCEEEEEcCC------CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC--
Confidence 34456666643 2577788776643221 1 1112222333333333333344578888988775322 111
Q ss_pred cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEE--CCEEEEEeCCCCCCCCce
Q psy10286 497 MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAAL--NDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 497 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 572 (748)
....-.+++.. ++.+++.|+.+ ..+..||..++. .....+. ....-.+++.. ++.+++.||.+ ..
T Consensus 96 h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D-----~~ 164 (304)
T 2ynn_A 96 HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-----RT 164 (304)
T ss_dssp CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETT-----SE
T ss_pred CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCC-----Ce
Confidence 11111222222 56677777754 357778876542 1111111 11111223332 45677788765 46
Q ss_pred EEEEeCCCCe--EEEccCCCCCCcceEEEEE---CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEE
Q psy10286 573 VECYEPDKDQ--WRIVKSMQKHRSAGGVIAF---DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 573 ~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 647 (748)
+..||..+.. ..... ...+.-...... ++..++.|+.+ ..+..+|..+.+-.. .+.........+.
T Consensus 165 v~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~s~D-----~~i~iWd~~~~~~~~--~~~~h~~~v~~~~ 235 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDD-----LTIKIWDYQTKSCVA--TLEGHMSNVSFAV 235 (304)
T ss_dssp EEEEETTCSSCSEEEEC--CCTTCEEEEEECCSTTCCEEEEEETT-----SEEEEEETTTTEEEE--EEECCSSCEEEEE
T ss_pred EEEEECCCCCccceecc--CCcCcEEEEEEEEcCCCCEEEEEcCC-----CeEEEEeCCCCccce--eeCCCCCCEEEEE
Confidence 7788875543 11111 111111111221 45566677664 368889988765322 1221122222233
Q ss_pred E--CCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 648 L--NNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 648 ~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
+ ++.+++.||.++ .+.+||..+.+-.
T Consensus 236 ~~p~~~~l~s~s~Dg-----~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 236 FHPTLPIIISGSEDG-----TLKIWNSSTYKVE 263 (304)
T ss_dssp ECSSSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred ECCCCCEEEEEcCCC-----eEEEEECCCCcee
Confidence 3 566778887653 5888998776543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.19 Score=52.47 Aligned_cols=218 Identities=14% Similarity=0.094 Sum_probs=103.6
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcce-eEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSA-VGAA 552 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~ 552 (748)
-..+..||..+++-...-..+.+......... ++.+++.|+.+ ..+..||..+.+-... +...... .+++
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~d~~~~~~~~~--~~~~~~~v~~~~ 193 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG-----PKVQLCDLKSGSCSHI--LQGHRQEILAVS 193 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS-----SSEEEEESSSSCCCEE--ECCCCSCEEEEE
T ss_pred CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCC-----CeEEEEeCCCcceeee--ecCCCCcEEEEE
Confidence 35688899888765444333322222221111 33467777644 3588888876542211 1111111 2222
Q ss_pred EE-CC-EEEEEeCCCCCCCCceEEEEeCCCCe--EEEccC------------CCCCCcceEEEEE--CCEEEEEccCCCC
Q psy10286 553 AL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKS------------MQKHRSAGGVIAF--DSYVYALGGHDGL 614 (748)
Q Consensus 553 ~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~------------~~~~r~~~~~~~~--~~~iyv~GG~~~~ 614 (748)
.. ++ .+++.|+.+ ..+..||..+.. ...+.. ..........+.+ ++..++.|+.++
T Consensus 194 ~~~~~~~ll~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 267 (408)
T 4a11_B 194 WSPRYDYILATASAD-----SRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN- 267 (408)
T ss_dssp ECSSCTTEEEEEETT-----SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ECCCCCcEEEEEcCC-----CcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCC-
Confidence 22 33 377778755 357788876543 111100 0111111122222 566677777643
Q ss_pred cccCeEEEEECCCCcEEEccC-----CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc
Q psy10286 615 SIFDSVERYDPKTDEWTSVKP-----MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR 689 (748)
Q Consensus 615 ~~~~~~~~yd~~~~~W~~~~~-----~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (748)
.+..||..+.+-..... ..............+..+++++.+ ..+.+||..+.+-... +......
T Consensus 268 ----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~v~d~~~~~~~~~--~~~~~~~ 336 (408)
T 4a11_B 268 ----RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG-----STIAVYTVYSGEQITM--LKGHYKT 336 (408)
T ss_dssp ----CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET-----TEEEEEETTTCCEEEE--ECCCSSC
T ss_pred ----eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC-----CEEEEEECcCCcceee--eccCCCe
Confidence 58899988765322110 001111111111122334444432 4788999877653322 2111112
Q ss_pred -eEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 690 -VALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 690 -~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
.+++. -++++++.||.++ .+.+||+.+.
T Consensus 337 v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~ 366 (408)
T 4a11_B 337 VDCCVFQSNFQELYSGSRDC-----NILAWVPSLY 366 (408)
T ss_dssp EEEEEEETTTTEEEEEETTS-----CEEEEEECC-
T ss_pred EEEEEEcCCCCEEEEECCCC-----eEEEEeCCCC
Confidence 22222 2677778887653 4778877664
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.37 Score=55.97 Aligned_cols=226 Identities=12% Similarity=0.095 Sum_probs=112.9
Q ss_pred cEEEEEcCccCCCCCCcceEeecCCCCceeec-c--cccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcc
Q psy10286 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-E--EETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSML 498 (748)
Q Consensus 422 ~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~--~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~ 498 (748)
+..+++|+.+ ..+..||..++..... . ...+....+..++.....|..-..+..||..+++....-.- ..
T Consensus 25 ~~~la~~~~~------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~ 97 (814)
T 3mkq_A 25 EPWVLTTLYS------GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HP 97 (814)
T ss_dssp SSEEEEEETT------SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CS
T ss_pred CCEEEEEeCC------CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CC
Confidence 3455666532 3578888777654332 1 11222223334433333333345788999888776432111 11
Q ss_pred cceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCC-eEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEE
Q psy10286 499 RSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRR-VWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 499 r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (748)
..-.+++.. ++...+.|+.+ ..+..||..++ .....-.- ....-.+++.. ++..++.|+.+ ..+.
T Consensus 98 ~~v~~~~~s~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~d-----g~v~ 166 (814)
T 3mkq_A 98 DYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPSTFASGCLD-----RTVK 166 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETT-----SEEEEEEGGGTSEEEEEEEC-CSSCEEEEEEETTEEEEEEEEETT-----SEEE
T ss_pred CCEEEEEEeCCCCEEEEEcCC-----CEEEEEECCCCceEEEEEcC-CCCcEEEEEEEcCCCCEEEEEeCC-----CeEE
Confidence 111222222 55556667643 46888888776 33222111 11112233333 46677777754 4688
Q ss_pred EEeCCCCeEEEccCCCCCCcceEEEEE---CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--C
Q psy10286 575 CYEPDKDQWRIVKSMQKHRSAGGVIAF---DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--N 649 (748)
Q Consensus 575 ~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~ 649 (748)
.||..+..-...-..........++.. ++..++.|+.++ .+..||..+.+-... +.........+.+ +
T Consensus 167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDL-----TIKIWDYQTKSCVAT--LEGHMSNVSFAVFHPT 239 (814)
T ss_dssp EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTS-----EEEEEETTTTEEEEE--EECCSSCEEEEEECSS
T ss_pred EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCcEEEE--EcCCCCCEEEEEEcCC
Confidence 888765542111111111222223332 667777777643 688999877653222 1111122222223 5
Q ss_pred CEEEEEeccCCCccccEEEEEeCCCCcE
Q psy10286 650 NKIYVCGGYDGAIFLQSVEMYDPITDEW 677 (748)
Q Consensus 650 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W 677 (748)
+.+++.||.+ ..+.+||..+.+-
T Consensus 240 ~~~l~~~~~d-----g~v~vwd~~~~~~ 262 (814)
T 3mkq_A 240 LPIIISGSED-----GTLKIWNSSTYKV 262 (814)
T ss_dssp SSEEEEEETT-----SCEEEEETTTCSE
T ss_pred CCEEEEEeCC-----CeEEEEECCCCcE
Confidence 6677777754 3578888877553
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.34 Score=48.46 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=95.3
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--C--CEEEEEeCCCCCCCCceEEEEeCCCCe-E
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--N--DKLYVCGGYDGVSSLNTVECYEPDKDQ-W 583 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~-W 583 (748)
+.+++.|+.+ ..+..||..+++|..+..+........++.+ + +.+++.|+.+ ..+..||..+.. +
T Consensus 67 g~~l~s~s~D-----~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d-----~~v~~wd~~~~~~~ 136 (297)
T 2pm7_B 67 GTILASCSYD-----GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD-----GKVSVVEFKENGTT 136 (297)
T ss_dssp CSEEEEEETT-----TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----SEEEEEEBCSSSCB
T ss_pred CCEEEEEcCC-----CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC-----CcEEEEEecCCCce
Confidence 5677778754 4688889888776544322211112222222 2 5667777754 356677766542 2
Q ss_pred EEccCCCCCCcceEEEEE--------------CCEEEEEccCCCCcccCeEEEEECCC--CcEEEccCCCCCCcceeEEE
Q psy10286 584 RIVKSMQKHRSAGGVIAF--------------DSYVYALGGHDGLSIFDSVERYDPKT--DEWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~--------------~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~p~~r~~~~~~~ 647 (748)
...........-.+++.. ++..++.||.++ .+..||..+ ..|.....+.........+.
T Consensus 137 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~ 211 (297)
T 2pm7_B 137 SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVA 211 (297)
T ss_dssp CCEEEECCSSCEEEEEECCCC------------CCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEE
T ss_pred eeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCC-----cEEEEEEcCCCceEEEEEEecCCCCceEEEE
Confidence 100000000000111111 245777777754 355566544 34654443332222223333
Q ss_pred E--C---CEEEEEeccCCCccccEEEEEeCCC--CcEEEccC--CCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEE
Q psy10286 648 L--N---NKIYVCGGYDGAIFLQSVEMYDPIT--DEWKMIAS--MNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 648 ~--~---~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~--~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~y 717 (748)
+ + +..++.|+.++ .+.+||..+ ..|..... ......-.++.. -++++++.||.++ .|.+|
T Consensus 212 ~sp~~~~~~~las~s~D~-----~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~-----~v~lw 281 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDR-----TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN-----KVTLW 281 (297)
T ss_dssp ECCCCSSSEEEEEEETTS-----CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS-----CEEEE
T ss_pred ECCCCCCceEEEEEECCC-----cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC-----cEEEE
Confidence 3 2 37788887653 566677654 34543211 111111122222 2677888887543 47777
Q ss_pred eCC-CCceEecCCC
Q psy10286 718 DPS-TDSWAFVAPM 730 (748)
Q Consensus 718 d~~-~~~W~~~~~~ 730 (748)
+.. .+.|..+..+
T Consensus 282 ~~~~~g~w~~~~~~ 295 (297)
T 2pm7_B 282 KENLEGKWEPAGEV 295 (297)
T ss_dssp EECTTSCEEEC---
T ss_pred EECCCCcEEecccc
Confidence 755 4689887655
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.26 Score=51.92 Aligned_cols=216 Identities=9% Similarity=0.097 Sum_probs=108.8
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||..+.+- ...+... ....+... ++..++.|+.+ ..+..||..+.+-...-. .....-.+++..
T Consensus 78 ~~v~i~d~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~ 148 (420)
T 3vl1_A 78 GHDFLFNTIIRDG--SKMLKRA-DYTAVDTAKLQMRRFILGTTE-----GDIKVLDSNFNLQREIDQ-AHVSEITKLKFF 148 (420)
T ss_dssp TEEEEEECCSEET--TTTSCSC-CEEEEEEECSSSCEEEEEETT-----SCEEEECTTSCEEEEETT-SSSSCEEEEEEC
T ss_pred CcEEEEEecccce--eeEEecC-CceEEEEEecCCCEEEEEECC-----CCEEEEeCCCcceeeecc-cccCccEEEEEC
Confidence 4677888765432 2222222 11222222 67788888754 368889988775443321 111222233333
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc-ceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS-AGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
++..++.|+.+ ..+..||..+.+-.. .+..... -.+++.. ++..++.|+.++ .+..||..+.+-.
T Consensus 149 ~~~~~l~s~s~d-----~~i~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 149 PSGEALISSSQD-----MQLKIWSVKDGSNPR--TLIGHRATVTDIAIIDRGRNVLSASLDG-----TIRLWECGTGTTI 216 (420)
T ss_dssp TTSSEEEEEETT-----SEEEEEETTTCCCCE--EEECCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTTEEE
T ss_pred CCCCEEEEEeCC-----CeEEEEeCCCCcCce--EEcCCCCcEEEEEEcCCCCEEEEEcCCC-----cEEEeECCCCcee
Confidence 66677777754 468889987654111 1111111 1222232 566666777643 5888898876533
Q ss_pred EccCCC-CCCcc-eeEEE----------------------ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCC
Q psy10286 632 SVKPML-TKRCR-LGVAA----------------------LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687 (748)
Q Consensus 632 ~~~~~p-~~r~~-~~~~~----------------------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (748)
..-... ..... .+++. -+++.++.|+.++ .+.+||..+.+-...-......
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~ 291 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG-----VITVHNVFSKEQTIQLPSKFTC 291 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS-----CEEEEETTTCCEEEEECCTTSS
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC-----eEEEEECCCCceeEEcccccCC
Confidence 321111 11111 11111 2567778887543 5889998776532221111111
Q ss_pred cceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 688 SRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 688 ~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.-.+++.. ++. +++.|+.+ ..+.+||..+..
T Consensus 292 ~v~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~ 324 (420)
T 3vl1_A 292 SCNSLTVDGNNANYIYAGYEN-----GMLAQWDLRSPE 324 (420)
T ss_dssp CEEEEEECSSCTTEEEEEETT-----SEEEEEETTCTT
T ss_pred CceeEEEeCCCCCEEEEEeCC-----CeEEEEEcCCCc
Confidence 11222222 444 77777744 368888887753
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.28 Score=51.97 Aligned_cols=219 Identities=12% Similarity=0.194 Sum_probs=110.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
+.+..+|..+++...+-.+........++.. ++..++.|+.+ ..+..||..+++-...-.-. .....+...
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D-----g~v~iWd~~~~~~~~~~~~h--~~~v~~~s~ 197 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSH--SARVGSLSW 197 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCC--SSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC-----CeEEEEEcCCCcEEEEEeCC--CCceEEEee
Confidence 4688999999887665444433322333333 67778888855 36888999887643322212 222344556
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEE--EECCEEEEEccCCCCcccCeEEEEECCCCc--E
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI--AFDSYVYALGGHDGLSIFDSVERYDPKTDE--W 630 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W 630 (748)
++.+.+.|+.+ ..+..+|.......... +.......... .-++..++.||.++ .+..+|..+.+ +
T Consensus 198 ~~~~l~sgs~d-----~~i~~~d~~~~~~~~~~-~~~h~~~~~~~~~~~~g~~l~s~~~D~-----~v~i~~~~~~~~~~ 266 (420)
T 4gga_A 198 NSYILSSGSRS-----GHIHHHDVRVAEHHVAT-LSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGGW 266 (420)
T ss_dssp ETTEEEEEETT-----SEEEEEETTSSSCEEEE-EECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCCSSCS
T ss_pred CCCEEEEEeCC-----CceeEeeecccceeeEE-ecccccceeeeeecCCCCeeeeeeccc-----cceEEeeccccccc
Confidence 77788888754 45667776554322111 11111111111 12556666666543 46667765543 1
Q ss_pred EEccCCCCCCcceeEEEE---CCEEEEEe-ccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeC
Q psy10286 631 TSVKPMLTKRCRLGVAAL---NNKIYVCG-GYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGG 704 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~---~~~i~v~G-G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG 704 (748)
..+...........+... +..+++.| |... ..|.+||..+.+-...-... ....+++.. ++.+++.+|
T Consensus 267 ~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEEC
T ss_pred eeeeeecccCCceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccceeeccc--cceeeeeecCCCCeEEEEEe
Confidence 111111111111122222 34455544 4321 46889998887644332211 112222222 455655556
Q ss_pred CCCCCCCCeEEEEeCCCCc
Q psy10286 705 YDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~ 723 (748)
..+ ..|.+||..+.+
T Consensus 341 ~~d----~~I~iwd~~~~~ 355 (420)
T 4gga_A 341 FAQ----NQLVIWKYPTMA 355 (420)
T ss_dssp TTT----CCEEEEETTTCC
T ss_pred cCC----CEEEEEECCCCc
Confidence 432 358888886643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.23 Score=52.58 Aligned_cols=213 Identities=18% Similarity=0.153 Sum_probs=105.5
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..+..||..+++....-.. ....-.+++.. ++.+++.||.++ .+..||..+.+-. ..+......-.++.+
T Consensus 130 g~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~-----~i~iwd~~~~~~~--~~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 130 ATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSADM-----TIKLWDFQGFECI--RTMHGHDHNVSSVSIM 201 (410)
T ss_dssp SCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CCCEEETTSSCEE--ECCCCCSSCEEEEEEC
T ss_pred CeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcee--EEEcCCCCCEEEEEEe
Confidence 4677888877654221110 11111222222 567788888653 4667787765432 222211112222222
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE--ECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA--FDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
++..++.||.+ ..+..||..++.-... +.........+. -++.+++.|+.++ .+..||..+.+..
T Consensus 202 p~~~~l~s~s~D-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~g~~l~s~s~D~-----~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 202 PNGDHIVSASRD-----KTIKMWEVQTGYCVKT--FTGHREWVRMVRPNQDGTLIASCSNDQ-----TVRVWVVATKECK 269 (410)
T ss_dssp SSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEE
T ss_pred CCCCEEEEEeCC-----CeEEEEECCCCcEEEE--EeCCCccEEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcee
Confidence 56677777755 4688899887653221 111111112222 2567777777653 5778888776543
Q ss_pred EccCCCCCCcceeEEEE----------------------CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc
Q psy10286 632 SVKPMLTKRCRLGVAAL----------------------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR 689 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~----------------------~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (748)
..- ........++.+ .+.+++.|+.+ ..+.+||..+..=.. .+......
T Consensus 270 ~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D-----~~i~iwd~~~~~~~~--~~~~h~~~ 340 (410)
T 1vyh_C 270 AEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCLM--TLVGHDNW 340 (410)
T ss_dssp EEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEEE--EEECCSSC
T ss_pred eEe--cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC-----CeEEEEECCCCceEE--EEECCCCc
Confidence 321 000111111111 25567777654 468899987764221 11111111
Q ss_pred eEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 690 VALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 690 ~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
...+.+ +++.++.||.+ ..|.+||..++.
T Consensus 341 v~~v~~~~~g~~l~s~s~D-----~~i~vwd~~~~~ 371 (410)
T 1vyh_C 341 VRGVLFHSGGKFILSCADD-----KTLRVWDYKNKR 371 (410)
T ss_dssp EEEEEECSSSSCEEEEETT-----TEEEEECCTTSC
T ss_pred EEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCc
Confidence 222222 56677777744 368888876643
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.091 Score=60.81 Aligned_cols=190 Identities=15% Similarity=0.195 Sum_probs=107.1
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--C--CEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--N--DKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++..++.||.+ ..+..||..++++..+..+......-.++.+ + +..++.||.+ ..+..||..++.|
T Consensus 20 dg~~latg~~d-----g~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D-----g~I~vwd~~~~~~ 89 (753)
T 3jro_A 20 YGKRLATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVLIWKEENGRW 89 (753)
T ss_dssp SSCCEEEEETT-----TEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCCeEEEEECC-----CcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC-----CeEEEEECCCCcc
Confidence 45556667644 3678888877777766554433333333333 3 6777888765 3688899999988
Q ss_pred EEccCCCCCCcceEEEEE--C--CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-----------
Q psy10286 584 RIVKSMQKHRSAGGVIAF--D--SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL----------- 648 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----------- 648 (748)
.....+.........+.+ + +.+++.||.++ .+..||..+..-...............+.+
T Consensus 90 ~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-----~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 90 SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-----KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred cccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-----cEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 777655443333333333 3 67788887643 688888876521111001111111122222
Q ss_pred ----CCEEEEEeccCCCccccEEEEEeCCCC--cEEEccCCCCCCcceEEEEE--C---CEEEEEeCCCCCCCCCeEEEE
Q psy10286 649 ----NNKIYVCGGYDGAIFLQSVEMYDPITD--EWKMIASMNVMRSRVALVAN--M---GKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 649 ----~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~---~~l~v~GG~~~~~~~~~v~~y 717 (748)
++..++.|+.++ .|.+||..+. .+..+..+........++.. + +++++.||.++ .+.+|
T Consensus 165 ~~~~d~~~l~sgs~dg-----~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg-----~I~iw 234 (753)
T 3jro_A 165 NGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-----TCIIW 234 (753)
T ss_dssp --CGGGCCEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS-----CEEEE
T ss_pred ccCCCCCEEEEEECCC-----eEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC-----EEEEe
Confidence 356777777653 4777776543 45544433332223333333 4 78888888653 58888
Q ss_pred eCCCC
Q psy10286 718 DPSTD 722 (748)
Q Consensus 718 d~~~~ 722 (748)
|..++
T Consensus 235 d~~~~ 239 (753)
T 3jro_A 235 TQDNE 239 (753)
T ss_dssp EESSS
T ss_pred cCCCC
Confidence 88765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.59 Score=48.95 Aligned_cols=194 Identities=13% Similarity=0.083 Sum_probs=99.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEE-----ccCCC-CCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNK-----VSPMC-FKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEPD 579 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-----~~~~~-~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~ 579 (748)
++.+++.|+.+ ..+..||..++.... +..+. ....-.+++.. ++ .+++.|+.+ ..+..||..
T Consensus 93 ~~~~l~s~s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~ 162 (402)
T 2aq5_A 93 NDNVIASGSED-----CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----NVILVWDVG 162 (402)
T ss_dssp CTTEEEEEETT-----SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----SCEEEEETT
T ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----CEEEEEECC
Confidence 56778888754 468888888764311 11111 11112223332 43 577777755 368899998
Q ss_pred CCeEEEccC-CCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEcc-CCC-CCCcceeEEEECCEEEEE
Q psy10286 580 KDQWRIVKS-MQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK-PML-TKRCRLGVAALNNKIYVC 655 (748)
Q Consensus 580 ~~~W~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p-~~r~~~~~~~~~~~i~v~ 655 (748)
+++....-. ......-.+++.. ++..++.|+.+ ..+..||+.+.+-...- ... ..+....+..-++++++.
T Consensus 163 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 237 (402)
T 2aq5_A 163 TGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT 237 (402)
T ss_dssp TTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE
T ss_pred CCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE
Confidence 886543321 1111111222222 66777777764 36999999887644322 111 111222222336787777
Q ss_pred eccCCCccccEEEEEeCCCCcE-EEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 656 GGYDGAIFLQSVEMYDPITDEW-KMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
|.... ....+.+||..+..- .....+.....-..++.. +..+++.|+.++ .+.+||..++.
T Consensus 238 g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg-----~i~i~d~~~~~ 301 (402)
T 2aq5_A 238 GFSRM--SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS-----SIRYFEITSEA 301 (402)
T ss_dssp EECTT--CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS-----CEEEEEECSST
T ss_pred eccCC--CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC-----eEEEEEecCCC
Confidence 73111 125788999876431 111111112222223332 345666665432 58888887765
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.16 Score=52.40 Aligned_cols=232 Identities=10% Similarity=0.040 Sum_probs=108.6
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-CcceeEEEEE
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-KRSAVGAAAL 554 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~~~ 554 (748)
.+|.+|+.+++++.+... ....-..++.. ++ .||+.+..+.....-.+|.+|..+++.+.+...+. .......+.
T Consensus 30 ~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~- 107 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT- 107 (361)
T ss_dssp EEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-
T ss_pred EEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-
Confidence 467778888888776544 21111122222 34 57776653211222345666777777776654432 222233333
Q ss_pred CC-EEEEEeCCCCCCCCceEEEEeCCCCe-EEEc-------cCCCCC-C----cceEEEEE-CC-EEEEEccCCCCcccC
Q psy10286 555 ND-KLYVCGGYDGVSSLNTVECYEPDKDQ-WRIV-------KSMQKH-R----SAGGVIAF-DS-YVYALGGHDGLSIFD 618 (748)
Q Consensus 555 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~-------~~~~~~-r----~~~~~~~~-~~-~iyv~GG~~~~~~~~ 618 (748)
++ .+|+.+..+ ..+..|+..++. ...+ ..-+.+ | .-|+++.. ++ .+|+.+.. .+
T Consensus 108 dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~~ 177 (361)
T 3scy_A 108 NGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----TD 177 (361)
T ss_dssp CSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----TT
T ss_pred CCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----CC
Confidence 55 566654322 467788875432 1111 111110 1 11334433 44 57776533 23
Q ss_pred eEEEEECCCCc-------EEEc-----cCCCCCCcceeEEEE-CC-EEEEEeccCCCccccEEEEEeCCCCcEEEccC--
Q psy10286 619 SVERYDPKTDE-------WTSV-----KPMLTKRCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS-- 682 (748)
Q Consensus 619 ~~~~yd~~~~~-------W~~~-----~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 682 (748)
.+..|+..... .... ...+....-..++.. ++ .+|+.+.. .+.+.+||..+.++..+..
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-----~~~v~v~~~~~g~~~~~~~~~ 252 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-----GGTVIAFRYADGMLDEIQTVA 252 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----TCEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-----CCeEEEEEecCCceEEeEEEe
Confidence 56777655433 2111 111111111222222 44 57776532 2568888888777755533
Q ss_pred -CCCCCcceEEEEE--CC-EEEEEeCCCCCCCCCeEEEEeC--CCCceEecCCC
Q psy10286 683 -MNVMRSRVALVAN--MG-KLWAIGGYDGVSNLPTVEVYDP--STDSWAFVAPM 730 (748)
Q Consensus 683 -~p~~r~~~~~~~~--~~-~l~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~ 730 (748)
.+........+.+ ++ .||+.+.. + .+.+.+|+. .+++++.+..+
T Consensus 253 ~~~~~~~~~~~i~~spdg~~l~v~~~~-~---~~~i~v~~~~~~~g~~~~~~~~ 302 (361)
T 3scy_A 253 ADTVNAQGSGDIHLSPDGKYLYASNRL-K---ADGVAIFKVDETNGTLTKVGYQ 302 (361)
T ss_dssp SCSSCCCCEEEEEECTTSSEEEEEECS-S---SCEEEEEEECTTTCCEEEEEEE
T ss_pred cCCCCCCCcccEEECCCCCEEEEECCC-C---CCEEEEEEEcCCCCcEEEeeEe
Confidence 2322222223333 45 46655432 0 235666655 56776655443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.34 Score=49.60 Aligned_cols=224 Identities=12% Similarity=0.092 Sum_probs=107.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||..+++-... +...... .+++.. ++..++.|+.+ ..+..||..+.+....-..+. .-.+++..
T Consensus 54 g~i~vwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~--~v~~~~~~ 124 (369)
T 3zwl_B 54 SSASVWYSLNGERLGT--LDGHTGTIWSIDVDCFTKYCVTGSAD-----YSIKLWDVSNGQCVATWKSPV--PVKRVEFS 124 (369)
T ss_dssp SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECSS--CEEEEEEC
T ss_pred CEEEEEeCCCchhhhh--hhhcCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCcEEEEeecCC--CeEEEEEc
Confidence 4678888877654322 1111111 222222 56667777754 468899988876544322221 12222222
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCe----EEEccCCCC-----CCc--ceEEEEE--CCEEEEEccCCCCcccCeE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQ----WRIVKSMQK-----HRS--AGGVIAF--DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~~~~~-----~r~--~~~~~~~--~~~iyv~GG~~~~~~~~~~ 620 (748)
++..++.|+.+.......+..||..+.. +......+. ... ....+.+ ++..++.|+.+ ..+
T Consensus 125 ~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i 199 (369)
T 3zwl_B 125 PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-----GKI 199 (369)
T ss_dssp TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT-----SEE
T ss_pred cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC-----CEE
Confidence 5666666654422222466777755432 222211111 000 1222222 55666777664 368
Q ss_pred EEEECCC-CcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-EC
Q psy10286 621 ERYDPKT-DEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NM 696 (748)
Q Consensus 621 ~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 696 (748)
..||..+ .+-... +.........+.+ ++..++.|+.+ ..+.+||..+.+....-.. ......++. -+
T Consensus 200 ~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~ 270 (369)
T 3zwl_B 200 SKYDVSNNYEYVDS--IDLHEKSISDMQFSPDLTYFITSSRD-----TNSFLVDVSTLQVLKKYET--DCPLNTAVITPL 270 (369)
T ss_dssp EEEETTTTTEEEEE--EECCSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred EEEECCCCcEeEEE--EecCCCceeEEEECCCCCEEEEecCC-----ceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence 9999987 332221 1111222222333 56677777654 4788999887664433221 111122222 25
Q ss_pred CEEEEEeCCCCCC---------CCCeEEEEeCCCCc
Q psy10286 697 GKLWAIGGYDGVS---------NLPTVEVYDPSTDS 723 (748)
Q Consensus 697 ~~l~v~GG~~~~~---------~~~~v~~yd~~~~~ 723 (748)
++.+++|+.++.. ....+.+||..+..
T Consensus 271 ~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 271 KEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp SSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred CceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 5666666544321 11257888876654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.29 Score=50.31 Aligned_cols=169 Identities=15% Similarity=0.213 Sum_probs=88.9
Q ss_pred ceEEEEeCCCCceEEccCCCc--ccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSM--LRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
..+..+|..+++|.....+.. ...-.+++.. ++..++.|+.++ .+..||..+..+..+..+......-.++.
T Consensus 38 ~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~h~~~v~~v~ 112 (345)
T 3fm0_A 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKNQDDFECVTTLEGHENEVKSVA 112 (345)
T ss_dssp SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEECCC-EEEEEEECCCSSCEEEEE
T ss_pred CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEccCCCeEEEEEccCCCCCceEEE
Confidence 457778887777753322211 1111222222 667777887553 46677777776655443332222222222
Q ss_pred E--CCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 554 L--NDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
+ +++.++.|+.+ ..+..||..+. .+..+..+.........+.+ ++.+++.|+.++ .+..||..+.
T Consensus 113 ~sp~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~-----~i~~w~~~~~ 182 (345)
T 3fm0_A 113 WAPSGNLLATCSRD-----KSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD-----TVKLYREEED 182 (345)
T ss_dssp ECTTSSEEEEEETT-----SCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS-----CEEEEEEETT
T ss_pred EeCCCCEEEEEECC-----CeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC-----cEEEEEecCC
Confidence 2 67777888765 35777887654 23333222222222222222 567777777654 5788888888
Q ss_pred cEEEccCCCCCCcceeEEEE--CCEEEEEeccCC
Q psy10286 629 EWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDG 660 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 660 (748)
.|.....+.........+.+ +++.++.|+.++
T Consensus 183 ~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~ 216 (345)
T 3fm0_A 183 DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216 (345)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence 88755433322222233333 567777887654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.54 Score=48.43 Aligned_cols=217 Identities=16% Similarity=0.156 Sum_probs=108.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-----CCcceeE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-----FKRSAVG 550 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-----~~r~~~~ 550 (748)
..+..+|..+......-..+.... .+++.. ++..++.||.+ ..+..|+.....-....... ....-.+
T Consensus 86 g~v~vWd~~~~~~~~~~~~~~~~v-~~~~~sp~g~~lasg~~d-----~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 159 (354)
T 2pbi_B 86 GKVIVWDSFTTNKEHAVTMPCTWV-MACAYAPSGCAIACGGLD-----NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA 159 (354)
T ss_dssp SEEEEEETTTCCEEEEEECSSSCC-CEEEECTTSSEEEEESTT-----SEEEEEECCCCTTCCSGGGCEEEEECSSCEEE
T ss_pred CeEEEEECCCCCcceEEecCCCCE-EEEEECCCCCEEEEeeCC-----CCEEEEEEeccccccccccceeeeccCCcEEE
Confidence 457778877665543322222111 222222 67777888865 35666765432100000000 0011112
Q ss_pred EEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce-EEEEE---CCEEEEEccCCCCcccCeEEEEEC
Q psy10286 551 AAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG-GVIAF---DSYVYALGGHDGLSIFDSVERYDP 625 (748)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~ 625 (748)
+... ++..++.|+.+ ..+..||..+.+-... +......- ++... ++..++.|+.++ .+..||.
T Consensus 160 ~~~~~~~~~l~t~s~D-----~~v~lwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg-----~v~~wd~ 227 (354)
T 2pbi_B 160 CSFTNSDMQILTASGD-----GTCALWDVESGQLLQS--FHGHGADVLCLDLAPSETGNTFVSGGCDK-----KAMVWDM 227 (354)
T ss_dssp EEECSSSSEEEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECCCSSCCEEEEEETTS-----CEEEEET
T ss_pred EEEeCCCCEEEEEeCC-----CcEEEEeCCCCeEEEE--EcCCCCCeEEEEEEeCCCCCEEEEEeCCC-----eEEEEEC
Confidence 2222 44455556543 4688899887764322 11111111 11221 356777887754 5888999
Q ss_pred CCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEE
Q psy10286 626 KTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWA 701 (748)
Q Consensus 626 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v 701 (748)
.+.+....- ........++.+ ++..++.||.+ ..+.+||..+..-...-...........+.. ++++++
T Consensus 228 ~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 300 (354)
T 2pbi_B 228 RSGQCVQAF--ETHESDVNSVRYYPSGDAFASGSDD-----ATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300 (354)
T ss_dssp TTCCEEEEE--CCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred CCCcEEEEe--cCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEE
Confidence 887654321 111122223333 56777888765 3678899877643322111111222333333 677777
Q ss_pred EeCCCCCCCCCeEEEEeCCCCc
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.|+.+ ..+.+||..++.
T Consensus 301 ~g~~d-----~~i~vwd~~~~~ 317 (354)
T 2pbi_B 301 AGYND-----YTINVWDVLKGS 317 (354)
T ss_dssp EEETT-----SCEEEEETTTCS
T ss_pred EEECC-----CcEEEEECCCCc
Confidence 77744 358899986654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=1 Score=45.58 Aligned_cols=225 Identities=9% Similarity=0.032 Sum_probs=119.7
Q ss_pred ceEEEEeCCCCceEEccCCC------------------cccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeE
Q psy10286 477 STVEVFDPLVGRWQMAEAMS------------------MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVW 536 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~------------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W 536 (748)
..+++||+.++++....... ....-++++.. ++.|||.... ..+.+||+.+++.
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~------~~i~~~d~~~g~~ 113 (322)
T 2fp8_A 40 GRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY------YHLSVVGSEGGHA 113 (322)
T ss_dssp SEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT------TEEEEECTTCEEC
T ss_pred CeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC------CCEEEEeCCCCEE
Confidence 56888998887765432110 01123455555 5789987431 2488899887765
Q ss_pred EEccCCCCC---cceeEEEEE--CCEEEEEeCCCC------------CCCCceEEEEeCCCCeEEEcc-CCCCCCcceEE
Q psy10286 537 NKVSPMCFK---RSAVGAAAL--NDKLYVCGGYDG------------VSSLNTVECYEPDKDQWRIVK-SMQKHRSAGGV 598 (748)
Q Consensus 537 ~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~ 598 (748)
+.+...... ..-..+++- +|.||+.-.... ......+++||+.+.+.+... .+..| ..+
T Consensus 114 ~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p---~gi 190 (322)
T 2fp8_A 114 TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP---GGA 190 (322)
T ss_dssp EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCC---CEE
T ss_pred EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccC---cce
Confidence 554321111 112333433 578998643210 012357999999888765442 12111 233
Q ss_pred EEE-C-CEEEEEccCCCCcccCeEEEEECCC---CcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCC-----ccccEE
Q psy10286 599 IAF-D-SYVYALGGHDGLSIFDSVERYDPKT---DEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGA-----IFLQSV 667 (748)
Q Consensus 599 ~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~-----~~~~~v 667 (748)
+.. + +.+|+.-.. .+.+++||+.. .+++.+..++. -.+++.- +|.|||....... .....+
T Consensus 191 a~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v 262 (322)
T 2fp8_A 191 EVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKG 262 (322)
T ss_dssp EECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEECSS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEE
T ss_pred EECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEeCCC---CCCeEECCCCCEEEEecCcccccccCCCccEE
Confidence 333 3 368887432 35799999875 23444333222 2233332 5678887642100 113568
Q ss_pred EEEeCCCCcEEEccCCCC--CCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 668 EMYDPITDEWKMIASMNV--MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 668 ~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+||+....-..+..... .....+++..+++|||.+.. .+.|.+|++..+.
T Consensus 263 ~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~-----~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 263 IKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF-----HGSVGILVYDKKG 315 (322)
T ss_dssp EEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSS-----CSEEEEEEC----
T ss_pred EEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecC-----CCceEEEeccccc
Confidence 999997554444432111 12223444568999987542 2578999886543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.17 Score=52.24 Aligned_cols=215 Identities=14% Similarity=0.074 Sum_probs=106.8
Q ss_pred ceEEEEeCCCCceEEccCC--C-cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAM--S-MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~--~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+..||..+++-...... . ....-.+++.. ++..++.|+.+ ..+..+|..+++-...-.-.. ..-.+++
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~~~~~~~~~~~h~-~~V~~~~ 176 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLAQQVVLSSYRAHA-AQVTCVA 176 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCS-SCEEEEE
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEcCcC-CceEEEE
Confidence 4678888877653221110 0 11111222222 67777888755 358889998875332211111 1112222
Q ss_pred EE-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce-EEEEE--CCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 553 AL-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG-GVIAF--DSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 553 ~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
.. + ..+++.|+.+ ..+..||..+.+-...-......... +++.. ++.+++.|+.++ .+..||..+
T Consensus 177 ~~~~~~~~l~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg-----~v~~wd~~~ 246 (344)
T 4gqb_B 177 ASPHKDSVFLSCSED-----NRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG-----TVSLVDTKS 246 (344)
T ss_dssp ECSSCTTEEEEEETT-----SCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS-----EEEEEESCC
T ss_pred ecCCCCCceeeeccc-----cccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC-----cEEEEECCC
Confidence 22 3 3577778765 35788998876533221111111111 22222 567888887643 588899876
Q ss_pred CcEEEccCCCCCCcceeEEEE--CC-EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE---CCEEEE
Q psy10286 628 DEWTSVKPMLTKRCRLGVAAL--NN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN---MGKLWA 701 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v 701 (748)
.+ .+..+.........+.+ ++ ++++.|+.+ ..|.+||..+.+-..+.. . ......+.. +..+++
T Consensus 247 ~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D-----~~i~vwd~~~~~~~~~~~--H-~~~V~~v~~sp~~~~lla 316 (344)
T 4gqb_B 247 TS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSED-----CSLAVLDSSLSELFRSQA--H-RDFVRDATWSPLNHSLLT 316 (344)
T ss_dssp ----CCEEEECCSSCEEEEEECSSSSCCEEEEETT-----SCEEEECTTCCEEEEECC--C-SSCEEEEEECSSSTTEEE
T ss_pred Cc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCC-----CeEEEEECCCCcEEEEcC--C-CCCEEEEEEeCCCCeEEE
Confidence 53 12222211222223333 33 567777755 358889988775433321 1 111222322 456777
Q ss_pred EeCCCCCCCCCeEEEEeCCCC
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~ 722 (748)
.||.++ .|.+++..+.
T Consensus 317 s~s~D~-----~v~~w~v~~~ 332 (344)
T 4gqb_B 317 TVGWDH-----QVVHHVVPTE 332 (344)
T ss_dssp EEETTS-----CEEEEECCC-
T ss_pred EEcCCC-----eEEEEECCCC
Confidence 788654 4777776553
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.26 Score=50.18 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=71.9
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-----Ccce
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-----KRSA 548 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-----~r~~ 548 (748)
...++.+|+.+++....-..+....-+.++.. ++ .+|+.++. ...+++||+.+++....-..+. ...-
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-----~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~ 94 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH-----YGDIYGIDLDTCKNTFHANLSSVPGEVGRSM 94 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEESCCSTTEEEECS
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCC-----CCcEEEEeCCCCcEEEEEEcccccccccccc
Confidence 46799999998876443333321012233333 44 57877642 2479999999887543322221 1112
Q ss_pred eEEEEE-CC-EEEEEeCC---CCC---CCCceEEEEeCCCCeEEE-ccCCCCCCcceEEEE-ECCEEEEEccCCCCcccC
Q psy10286 549 VGAAAL-ND-KLYVCGGY---DGV---SSLNTVECYEPDKDQWRI-VKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFD 618 (748)
Q Consensus 549 ~~~~~~-~~-~iyv~GG~---~~~---~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 618 (748)
++++.. +| .+|+.+.. ... .....+..||+.+++-.. +...+.++.-.+++. -++++|+.++
T Consensus 95 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~-------- 166 (349)
T 1jmx_B 95 YSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP-------- 166 (349)
T ss_dssp SCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS--------
T ss_pred cceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccC--------
Confidence 233333 45 55555421 000 012578899987633111 111112222223333 3566777432
Q ss_pred eEEEEECCCCcEE
Q psy10286 619 SVERYDPKTDEWT 631 (748)
Q Consensus 619 ~~~~yd~~~~~W~ 631 (748)
++..+|+.+.+-.
T Consensus 167 ~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 167 DIYKMDVKTGKYT 179 (349)
T ss_dssp SEEEECTTTCCEE
T ss_pred cEEEEeCCCCcee
Confidence 3888888777644
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.25 Score=54.63 Aligned_cols=227 Identities=9% Similarity=0.033 Sum_probs=116.2
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEEC--CCCeEEEccCCCCCcceeEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDP--VRRVWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~r~~~~~ 551 (748)
...+..+|..+++-...-.. ...-|+++.. + .++|+.+. + +.+..||+ .+.+- +..++....-.++
T Consensus 158 d~~V~v~D~~t~~~~~~i~~--g~~~~~v~~spdg~~l~v~~~-d-----~~V~v~D~~~~t~~~--~~~i~~g~~p~~v 227 (543)
T 1nir_A 158 AGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIGR-D-----ARIDMIDLWAKEPTK--VAEIKIGIEARSV 227 (543)
T ss_dssp GTEEEEEETTTCCEEEEEEC--STTEEEEEECTTSCEEEEEET-T-----SEEEEEETTSSSCEE--EEEEECCSEEEEE
T ss_pred CCeEEEEECCCceEEEEEec--CcccceEEECCCCCEEEEECC-C-----CeEEEEECcCCCCcE--EEEEecCCCcceE
Confidence 35688889988765332111 1123444443 4 46676553 2 67999999 66543 2233333333344
Q ss_pred EEE-----CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-----------CCCCcceEEEEE-CCEEEEEccCCC
Q psy10286 552 AAL-----ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-----------QKHRSAGGVIAF-DSYVYALGGHDG 613 (748)
Q Consensus 552 ~~~-----~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----------~~~r~~~~~~~~-~~~iyv~GG~~~ 613 (748)
+.. +| .+|+.+.. -+.+.++|..+.+-...-+. +.+|....+... ++.+|+.+..
T Consensus 228 a~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-- 300 (543)
T 1nir_A 228 ESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-- 300 (543)
T ss_dssp EECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT--
T ss_pred EeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC--
Confidence 443 45 45554321 25678889877653322111 112222222222 4455555433
Q ss_pred CcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCE-EEEEeccCCCccccEEEEEeCCCCcEEEc---cCCCCCCc
Q psy10286 614 LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI---ASMNVMRS 688 (748)
Q Consensus 614 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~ 688 (748)
...++.+|..+.+-..+...+..+.-+..+.- +++ +|+.+.. .+.|.++|.++.+-... +..|.+..
T Consensus 301 ---~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 301 ---TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp ---TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred ---CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 35788999876432111122233333444433 454 5554422 36788999998865432 33444433
Q ss_pred ceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCC-----ceEecCCCC
Q psy10286 689 RVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTD-----SWAFVAPMC 731 (748)
Q Consensus 689 ~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~~ 731 (748)
+.....- ++.+|+.+.... .+|.++|..+. .|+.+..++
T Consensus 373 g~~~~~p~~g~~~~s~~~~d----~~V~v~d~~~~~~~~~~~~~v~~l~ 417 (543)
T 1nir_A 373 GANFVHPKYGPVWSTSHLGD----GSISLIGTDPKNHPQYAWKKVAELQ 417 (543)
T ss_dssp CEEEEETTTEEEEEEEBSSS----SEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred CcccCCCCCccEEEeccCCC----ceEEEEEeCCCCCchhcCeEEEEEE
Confidence 3333222 478888765322 36888887762 377655544
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.66 Score=45.95 Aligned_cols=186 Identities=9% Similarity=-0.027 Sum_probs=100.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCC-eE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKD-QW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W 583 (748)
.+++++.|.. ...+..+|+.+++ |+.-.. .....|.+.. -+|++++.+. +.+..||+..+ .|
T Consensus 4 ~~~~lv~~~~-----~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilvs~~-------~~V~~~d~~G~~~W 69 (276)
T 3no2_A 4 PQHLLVGGSG-----WNKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILFSYS-------KGAKMITRDGRELW 69 (276)
T ss_dssp CCEEEEECTT-----CSEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEEECB-------SEEEEECTTSCEEE
T ss_pred CCcEEEeeCC-----CCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEEeCC-------CCEEEECCCCCEEE
Confidence 3567776653 2578899987775 765432 1112233334 4888888432 46999999332 37
Q ss_pred EEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCc-EEEc-c-CCCC--CCcceeEEEECCEEEEEec
Q psy10286 584 RIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDE-WTSV-K-PMLT--KRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~-~-~~p~--~r~~~~~~~~~~~i~v~GG 657 (748)
+.-.+. ....+++.. .+|.+++..+.+ ...++.+|+.... |+.- . ..+. ..........++.+++...
T Consensus 70 ~~~~~~--~~~~~~~~~~~dG~~lv~~~~~----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~ 143 (276)
T 3no2_A 70 NIAAPA--GCEMQTARILPDGNALVAWCGH----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF 143 (276)
T ss_dssp EEECCT--TCEEEEEEECTTSCEEEEEEST----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET
T ss_pred EEcCCC--CccccccEECCCCCEEEEecCC----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEec
Confidence 765421 112233333 366666654421 1368888885442 4432 1 1111 1111222334666666653
Q ss_pred cCCCccccEEEEEeCCCC-cEEEccCCCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEec
Q psy10286 658 YDGAIFLQSVEMYDPITD-EWKMIASMNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAFV 727 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~-~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 727 (748)
. ...+.+||++-+ .|+.-.. . . .+++.. .++.++|.++.+ ..+..+|+++++ |+.-
T Consensus 144 ~-----~~~v~~~d~~G~~~w~~~~~-~--~-~~~~~~~~~g~~~v~~~~~-----~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 144 A-----TSEVREIAPNGQLLNSVKLS-G--T-PFSSAFLDNGDCLVACGDA-----HCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp T-----TTEEEEECTTSCEEEEEECS-S--C-CCEEEECTTSCEEEECBTT-----SEEEEECTTTCCEEEEEE
T ss_pred C-----CCEEEEECCCCCEEEEEECC-C--C-ccceeEcCCCCEEEEeCCC-----CeEEEEeCcCCcEEEEec
Confidence 2 257899998733 2654322 1 1 223333 478888876532 369999999654 6653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.71 Score=51.29 Aligned_cols=269 Identities=14% Similarity=0.083 Sum_probs=129.7
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCC----c-eeeccc--cc-ccceEEec--ccccccCCCccceEEEEeCCCC---
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVG----R-WQMAEE--ET-LSNAVIST--KSCLTKAGDSLSTVEVFDPLVG--- 487 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~----~-W~~~~~--~~-~~~~~~~~--~~~~~~~g~~~~~~~~yd~~~~--- 487 (748)
++..+++|+. ..+..||..++ . -..+.. .. +....+.. ++.....|..-..+..||..++
T Consensus 29 dg~~l~~~~~-------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 29 TTNAIAYPCG-------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES 101 (615)
T ss_dssp TTTEEEEEET-------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred CCCEEEEecC-------CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc
Confidence 4455555551 25778887765 2 222222 12 22233344 4433333333346777777544
Q ss_pred ---ceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCE-EEE
Q psy10286 488 ---RWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDK-LYV 560 (748)
Q Consensus 488 ---~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~-iyv 560 (748)
....+..+...... .+++.. +++.++.||.+.. ....++.||.... -..+.. ....-.+++.. ++. +++
T Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~~~-~~~~~~--~~~~v~~~~~~~~~~~~l~ 177 (615)
T 1pgu_A 102 NSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGNS-LGEVSG--HSQRINACHLKQSRPMRSM 177 (615)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTCCE-EEECCS--CSSCEEEEEECSSSSCEEE
T ss_pred ccccccccchhhcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEECCCc-ceeeec--CCccEEEEEECCCCCcEEE
Confidence 33333222211111 222222 5566666664321 2346777773321 111111 11111222222 443 677
Q ss_pred EeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc---c-eEEEEE-C-CEEEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 561 CGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS---A-GGVIAF-D-SYVYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 561 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~---~-~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
.|+.+ ..+..||..+.+-... +..... . .+++.. + +..++.|+.++ .+..||..+.+....-
T Consensus 178 ~~~~d-----~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~ 245 (615)
T 1pgu_A 178 TVGDD-----GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----KISCFDGKSGEFLKYI 245 (615)
T ss_dssp EEETT-----TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----CEEEEETTTCCEEEEC
T ss_pred EEeCC-----CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCCC-----eEEEEECCCCCEeEEe
Confidence 77754 4688888776553322 221111 2 222222 5 67777777643 6889998877654332
Q ss_pred CCC--CCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-C--CCcceEEEEECCEEEEEeCCCCC
Q psy10286 635 PML--TKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-V--MRSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 635 ~~p--~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~--~r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
..+ ........+.+ ++..++.|+.+ ..+.+||..+.+....-..+ . .....++...++..++.|+.+
T Consensus 246 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 318 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-- 318 (615)
T ss_dssp CBTTBCCCSCEEEEEESSSSEEEEEETT-----SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT--
T ss_pred cccccccCCceEEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC--
Confidence 110 11111222222 77777887754 46889999877654332211 1 111222333366667777654
Q ss_pred CCCCeEEEEeCCCC
Q psy10286 709 SNLPTVEVYDPSTD 722 (748)
Q Consensus 709 ~~~~~v~~yd~~~~ 722 (748)
..+.+||..++
T Consensus 319 ---g~i~~~d~~~~ 329 (615)
T 1pgu_A 319 ---GTLNFYELGHD 329 (615)
T ss_dssp ---SCEEEEETTEE
T ss_pred ---CCEEEEECCCC
Confidence 35888888763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.42 Score=54.05 Aligned_cols=239 Identities=13% Similarity=-0.015 Sum_probs=128.6
Q ss_pred cceEEEEeCC--C-CceEEccCCCc---ccceeEEEEE-CCEEEEEccCCC-----CCCCCeEEEEECCC------CeEE
Q psy10286 476 LSTVEVFDPL--V-GRWQMAEAMSM---LRSRVGVAVM-KNRLYAFGGYNG-----SERLSTVEEFDPVR------RVWN 537 (748)
Q Consensus 476 ~~~~~~yd~~--~-~~W~~~~~~~~---~r~~~~~~~~-~~~iyv~GG~~~-----~~~~~~v~~yd~~t------~~W~ 537 (748)
...+|.++.. . +....+...+. .....+.+.. +|+..+++..+. ......++.+|..+ .+..
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 180 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR 180 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee
Confidence 4568888887 4 66666665431 1122222332 554444443221 12335799999988 6655
Q ss_pred Ecc-CCCCCcceeEEEEECCEEEEEeCCCCC-C--CCceEEEEeCC-CC---eEEEccCCCCCCcceEEEEE-CCEEEEE
Q psy10286 538 KVS-PMCFKRSAVGAAALNDKLYVCGGYDGV-S--SLNTVECYEPD-KD---QWRIVKSMQKHRSAGGVIAF-DSYVYAL 608 (748)
Q Consensus 538 ~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~-~--~~~~~~~yd~~-~~---~W~~~~~~~~~r~~~~~~~~-~~~iyv~ 608 (748)
.+. .-+ ......+..-+|+..++.+.+.. . ....++.+|.. ++ ....+..-.. ......+.. +|++|+.
T Consensus 181 ~l~~~~~-~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~-~~~~~~~~spdg~l~~~ 258 (662)
T 3azo_A 181 ELSDDAH-RFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE-EAIAQAEWAPDGSLIVA 258 (662)
T ss_dssp ESSCSCS-SEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT-BCEEEEEECTTSCEEEE
T ss_pred EEEecCC-CcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC-ceEcceEECCCCeEEEE
Confidence 554 211 11111122226654444443321 1 23579999998 56 3443322111 111222222 6777777
Q ss_pred ccCCCCcccCeEEEEECCCCcEEEccCCCCCC----c---ceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 609 GGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR----C---RLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 609 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~---~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+..++ ...++.+|+.+.+|..+....... . ....+.. ++++++.+.. + ...+|.+|..+.....+
T Consensus 259 ~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~---~~~l~~~d~~~~~~~~l 331 (662)
T 3azo_A 259 TDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G---AAVLGILDPESGELVDA 331 (662)
T ss_dssp ECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S---SCEEEEEETTTTEEEEC
T ss_pred ECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C---ccEEEEEECCCCcEEEe
Confidence 66543 247999999899998875432111 0 1123333 6777777754 2 46789999988887776
Q ss_pred cCCCCCCcceEE-EEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVAL-VANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~-~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... .....+ ..-++.+++..+... ....++.+|+.+++.+.+
T Consensus 332 ~~~~--~~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 332 AGPW--TEWAATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRARTI 375 (662)
T ss_dssp CSSC--CEEEEEEEEETTEEEEEEEETT--EEEEEEEEETTTCCEEEE
T ss_pred cCCC--CeEEEEEecCCCEEEEEEcCCC--CCCEEEEEECCCCceEEe
Confidence 4321 111223 344677776654322 224688889888877665
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.51 Score=52.06 Aligned_cols=276 Identities=11% Similarity=0.004 Sum_probs=136.5
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCceeeccc-ccccceE-Eeccc-ccccCCCccceEEEEeC--CCCceEEccC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-ETLSNAV-ISTKS-CLTKAGDSLSTVEVFDP--LVGRWQMAEA 494 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~-~~~~~~~-~~~~~-~~~~~g~~~~~~~~yd~--~~~~W~~~~~ 494 (748)
-++.+|+.+..+ .++..+|..+++-...-. ....+.+ +..++ .++..+.. +.+..||. .+.+- +..
T Consensus 147 p~~~~~vs~~~d------~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~--~~~ 217 (543)
T 1nir_A 147 LPNLFSVTLRDA------GQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTK--VAE 217 (543)
T ss_dssp GGGEEEEEEGGG------TEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEE--EEE
T ss_pred CCCEEEEEEcCC------CeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcE--EEE
Confidence 356788876542 367888888776532211 1112222 34433 34444333 78999999 55543 222
Q ss_pred CCcccceeEEEEE-----CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEc-cC--C--------CCCcceeEEEEE-CC
Q psy10286 495 MSMLRSRVGVAVM-----KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKV-SP--M--------CFKRSAVGAAAL-ND 556 (748)
Q Consensus 495 ~~~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~--~--------~~~r~~~~~~~~-~~ 556 (748)
++....-..++.. ++ .+|+.+-. .+.+.++|..+.+-... +. + +.+|....+... ++
T Consensus 218 i~~g~~p~~va~sp~~~~dg~~l~v~~~~-----~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 218 IKIGIEARSVESSKFKGYEDRYTIAGAYW-----PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EECCSEEEEEEECCSTTCTTTEEEEEEEE-----SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred EecCCCcceEEeCCCcCCCCCEEEEEEcc-----CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 2222222333332 34 55554321 24688889887653322 21 1 112222222222 44
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECCCCcEEEc-
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSV- 633 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~- 633 (748)
.+|+.+.. ...++.+|..+.+-..+..++..+.-+..+.. ++ ++|+.+.. .+.+..+|..+++-...
T Consensus 293 ~~~vs~~~-----~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~-----~~~v~v~D~~tg~l~~~i 362 (543)
T 1nir_A 293 EFIVNVKE-----TGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANN-----SNKVAVIDSKDRRLSALV 362 (543)
T ss_dssp EEEEEETT-----TTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGG-----GTEEEEEETTTTEEEEEE
T ss_pred EEEEEECC-----CCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecC-----CCeEEEEECCCCeEEEee
Confidence 55555432 35788888876431111112223333334433 44 45555433 35788899998875442
Q ss_pred --cCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCC-----cEEEccCCCCCCcc-eEEEEE--CCEEEEE
Q psy10286 634 --KPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITD-----EWKMIASMNVMRSR-VALVAN--MGKLWAI 702 (748)
Q Consensus 634 --~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~p~~r~~-~~~~~~--~~~l~v~ 702 (748)
...|.+..+.....- ++.+|+.+... .+.|-++|..+. .|+.+..++..-.+ ..+... +..||+-
T Consensus 363 ~~g~~ph~g~g~~~~~p~~g~~~~s~~~~----d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 363 DVGKTPHPGRGANFVHPKYGPVWSTSHLG----DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp ECSSSBCCTTCEEEEETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred ccCCCCCCCCCcccCCCCCccEEEeccCC----CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 223333222222211 37788877432 247888887762 37777665543222 222222 3455553
Q ss_pred eCCCCC-CCCCeEEEEeCCCCc
Q psy10286 703 GGYDGV-SNLPTVEVYDPSTDS 723 (748)
Q Consensus 703 GG~~~~-~~~~~v~~yd~~~~~ 723 (748)
.-.+.+ ....+|.+||..+.+
T Consensus 439 ~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 439 TTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp CTTCSSHHHHTCEEEEETTCTT
T ss_pred cCCCCCcccCceEEEEECCCCC
Confidence 211111 013579999998765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.05 E-value=0.37 Score=48.27 Aligned_cols=206 Identities=13% Similarity=0.093 Sum_probs=108.0
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC----Cccee
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF----KRSAV 549 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~----~r~~~ 549 (748)
....+++||+.++....... +. .-.+++.. ++.+|+..+ ..+.+||+.+++++.+...+. .+...
T Consensus 33 ~~~~i~~~d~~~~~~~~~~~-~~--~~~~i~~~~dG~l~v~~~-------~~l~~~d~~~g~~~~~~~~~~~~~~~~~~d 102 (297)
T 3g4e_A 33 PAKKVCRWDSFTKQVQRVTM-DA--PVSSVALRQSGGYVATIG-------TKFCALNWKEQSAVVLATVDNDKKNNRFND 102 (297)
T ss_dssp TTTEEEEEETTTCCEEEEEC-SS--CEEEEEEBTTSSEEEEET-------TEEEEEETTTTEEEEEEECCTTCSSEEEEE
T ss_pred CCCEEEEEECCCCcEEEEeC-CC--ceEEEEECCCCCEEEEEC-------CeEEEEECCCCcEEEEEecCCCCCCCCCCC
Confidence 34678999998876544321 11 11223333 666666431 479999999998877654321 22222
Q ss_pred EEEEECCEEEEEeCCCC------CCCCceEEEEeCCCCeEEEc-cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeE
Q psy10286 550 GAAALNDKLYVCGGYDG------VSSLNTVECYEPDKDQWRIV-KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 620 (748)
.++.-+|++|+..-... ......++++|+.. +...+ ..+..+ .+.+.. +..+|+.... .+.+
T Consensus 103 i~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~p---ngi~~spdg~~lyv~~~~-----~~~i 173 (297)
T 3g4e_A 103 GKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDIS---NGLDWSLDHKIFYYIDSL-----SYSV 173 (297)
T ss_dssp EEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBE---EEEEECTTSCEEEEEEGG-----GTEE
T ss_pred EEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccc---cceEEcCCCCEEEEecCC-----CCcE
Confidence 22222778887431111 12335789999864 33322 222111 233333 3468887654 3568
Q ss_pred EEEEC--CCCcEEE---ccCCCC-CCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEE
Q psy10286 621 ERYDP--KTDEWTS---VKPMLT-KRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV 693 (748)
Q Consensus 621 ~~yd~--~~~~W~~---~~~~p~-~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 693 (748)
++||. .+..... +..++. ...-.+++.- +|.||+....+ ..|.+||+++.+....-.+|..+ ..++
T Consensus 174 ~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~~~i~~p~~~--~t~~ 246 (297)
T 3g4e_A 174 DAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRLQTVKLPVDK--TTSC 246 (297)
T ss_dssp EEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEEEEEECSSSB--EEEE
T ss_pred EEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEEEEEECCCCC--ceEE
Confidence 88875 4554432 111221 1112233332 67888875321 46999999977655433344322 2333
Q ss_pred EEC----CEEEEEeCCC
Q psy10286 694 ANM----GKLWAIGGYD 706 (748)
Q Consensus 694 ~~~----~~l~v~GG~~ 706 (748)
..+ +.|||.....
T Consensus 247 ~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 247 CFGGKNYSEMYVTCARD 263 (297)
T ss_dssp EEESGGGCEEEEEEBCT
T ss_pred EEeCCCCCEEEEEcCCc
Confidence 332 5899987544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=96.01 E-value=0.39 Score=48.06 Aligned_cols=195 Identities=13% Similarity=0.060 Sum_probs=104.0
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.+|+++.. ...+++||+.+++...... +. .-.+.+.. +|++|+..+ ..+.+||+.+++++.+
T Consensus 24 ~~~l~~~d~~-----~~~i~~~d~~~~~~~~~~~-~~--~~~~i~~~~dG~l~v~~~-------~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 24 SNSLLFVDIP-----AKKVCRWDSFTKQVQRVTM-DA--PVSSVALRQSGGYVATIG-------TKFCALNWKEQSAVVL 88 (297)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTCCEEEEEC-SS--CEEEEEEBTTSSEEEEET-------TEEEEEETTTTEEEEE
T ss_pred CCEEEEEECC-----CCEEEEEECCCCcEEEEeC-CC--ceEEEEECCCCCEEEEEC-------CeEEEEECCCCcEEEE
Confidence 4678887642 2578999999876544321 21 12233333 677776532 4789999999998877
Q ss_pred cCCCC--C--CcceEEEEECCEEEEEccCCCC------cccCeEEEEECCCCcEEEcc-CCCCCCcceeEEEE-C-CEEE
Q psy10286 587 KSMQK--H--RSAGGVIAFDSYVYALGGHDGL------SIFDSVERYDPKTDEWTSVK-PMLTKRCRLGVAAL-N-NKIY 653 (748)
Q Consensus 587 ~~~~~--~--r~~~~~~~~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~-~~i~ 653 (748)
...+. + +....++.-+|++|+..-.... .....++++|+.. +...+. .+. ...+.+.. + +.+|
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~---~pngi~~spdg~~ly 164 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD---ISNGLDWSLDHKIFY 164 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES---BEEEEEECTTSCEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc---cccceEEcCCCCEEE
Confidence 54432 1 2222222236788774311110 1234789999863 333321 111 11233333 3 4688
Q ss_pred EEeccCCCccccEEEEEeC--CCCcEEE---ccCCCCC-CcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 654 VCGGYDGAIFLQSVEMYDP--ITDEWKM---IASMNVM-RSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~--~~~~W~~---~~~~p~~-r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
+.... .+.|++||. .+..... +..++.. ..-.+++. -+|.|||..... ..|.+||+++++...
T Consensus 165 v~~~~-----~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~-----~~v~~~d~~tG~~~~ 234 (297)
T 3g4e_A 165 YIDSL-----SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG-----GRVIRLDPVTGKRLQ 234 (297)
T ss_dssp EEEGG-----GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT-----TEEEEECTTTCCEEE
T ss_pred EecCC-----CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC-----CEEEEEcCCCceEEE
Confidence 87643 357888875 4554421 1222211 11123333 267888874311 369999999777654
Q ss_pred cCCCC
Q psy10286 727 VAPMC 731 (748)
Q Consensus 727 ~~~~~ 731 (748)
.-.+|
T Consensus 235 ~i~~p 239 (297)
T 3g4e_A 235 TVKLP 239 (297)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 43444
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=1.1 Score=50.92 Aligned_cols=241 Identities=14% Similarity=0.095 Sum_probs=125.8
Q ss_pred CCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCC--------CCCCeEEEEECCCCeE--EEccCC
Q psy10286 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGS--------ERLSTVEEFDPVRRVW--NKVSPM 542 (748)
Q Consensus 473 g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~v~~yd~~t~~W--~~~~~~ 542 (748)
|.....++.+|..+++..... .+..+....+-. +++-++++..... .....+++++..+..= ..+...
T Consensus 151 G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~ 228 (693)
T 3iuj_A 151 GSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA 228 (693)
T ss_dssp SCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC
T ss_pred CCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec
Confidence 333467899999999876541 221211111222 5543333332211 3456789988877542 122222
Q ss_pred CC--CcceeEEEE-ECCEEEEE-eCCCCCCCCceEEEEeCCCC--eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcc
Q psy10286 543 CF--KRSAVGAAA-LNDKLYVC-GGYDGVSSLNTVECYEPDKD--QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 543 ~~--~r~~~~~~~-~~~~iyv~-GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 616 (748)
+. +....+... -+|+..++ .+.+. ..+.++.+|..+. .|..+..-..... ......++.+|+....++ .
T Consensus 229 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~~~~~~~-~~~~~~g~~l~~~t~~~~--~ 303 (693)
T 3iuj_A 229 IPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQGDLDADV-SLVDNKGSTLYLLTNRDA--P 303 (693)
T ss_dssp SGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEECSSSSCE-EEEEEETTEEEEEECTTC--T
T ss_pred CCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeCCCCceE-EEEeccCCEEEEEECCCC--C
Confidence 22 222223222 25553333 32221 2268999998765 6776654222211 123445889999876543 2
Q ss_pred cCeEEEEECCCC---cEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEE
Q psy10286 617 FDSVERYDPKTD---EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV 693 (748)
Q Consensus 617 ~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~ 693 (748)
...++.+|+.+. .|+.+.+-.... . +....++.|++....++ ...++++|........+. +|.........
T Consensus 304 ~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l~-~p~~~~~~~~~ 377 (693)
T 3iuj_A 304 NRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREVA-LPGLGSVSGFN 377 (693)
T ss_dssp TCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEEC-CSSSSEEEECC
T ss_pred CCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEee-cCCCceEEeee
Confidence 457999998763 488764332222 2 45555777766554333 357899998876555553 22221111111
Q ss_pred E--ECCEEEEE-eCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 694 A--NMGKLWAI-GGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 694 ~--~~~~l~v~-GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
. -++.+++. .+.. .-.+++.||+.+++++.+..
T Consensus 378 ~~~d~~~l~~~~ss~~---tP~~l~~~d~~~g~~~~l~~ 413 (693)
T 3iuj_A 378 GKHDDPALYFGFENYA---QPPTLYRFEPKSGAISLYRA 413 (693)
T ss_dssp CCTTCSCEEEEEECSS---SCCEEEEECTTTCCEEEEEC
T ss_pred cCCCCCEEEEEecCCC---CCCEEEEEECCCCeEEEEEe
Confidence 1 12344443 2222 23579999999988776644
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.98 E-value=1.4 Score=50.01 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=72.4
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC--------cceeEEEEECCEEEEEeCCCCCCCCceEE
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK--------RSAVGAAALNDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 574 (748)
++.++.||+.+.. ..++.+|..|.+ |+.-...+.. ....+.++.+++||+.+. -..+.
T Consensus 67 ~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l~ 134 (689)
T 1yiq_A 67 IVVDGVMYTTGPF------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRLE 134 (689)
T ss_dssp EEETTEEEEECGG------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEEE
T ss_pred EEECCEEEEEcCC------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEEE
Confidence 4679999997652 468999988764 8865433211 111234567889987542 24789
Q ss_pred EEeCCCCe--EEEccC-CCC--CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEc
Q psy10286 575 CYEPDKDQ--WRIVKS-MQK--HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSV 633 (748)
Q Consensus 575 ~yd~~~~~--W~~~~~-~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 633 (748)
.+|..+.+ |+.... -+. .....+.++.++.+|+-.+.........++.||+.+.+ |+.-
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 99998775 887643 111 11223445678998874332222234579999998875 8754
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.98 E-value=1.4 Score=45.99 Aligned_cols=233 Identities=11% Similarity=0.075 Sum_probs=126.1
Q ss_pred EEEEeCCC--CceEEccCCCcccceeEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC---CCC--c--
Q psy10286 479 VEVFDPLV--GRWQMAEAMSMLRSRVGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM---CFK--R-- 546 (748)
Q Consensus 479 ~~~yd~~~--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~--r-- 546 (748)
+++++... .+|+...+......-++++.. .+.||+.+.... .-..+++.+....+|+.+... +.. +
T Consensus 33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~ 110 (394)
T 3b7f_A 33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAFNKAPEGET 110 (394)
T ss_dssp EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC----
T ss_pred eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCccccCCCcccccc
Confidence 56666544 689876422222223444443 467888654211 112588888788899988532 211 1
Q ss_pred -----ceeEEEEE----CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC---CC--------------CCcceEEEE
Q psy10286 547 -----SAVGAAAL----NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM---QK--------------HRSAGGVIA 600 (748)
Q Consensus 547 -----~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~--------------~r~~~~~~~ 600 (748)
.-.+++.. .+.+|+.+. ...+++.+-...+|+.+... |. ....++++.
T Consensus 111 ~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~ 184 (394)
T 3b7f_A 111 GRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILV 184 (394)
T ss_dssp CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEE
T ss_pred cccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEE
Confidence 11223332 467887542 13688888888899988532 21 111234443
Q ss_pred E---CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC------CCC-----CcceeEEEEC---CEEEEEeccCCCcc
Q psy10286 601 F---DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM------LTK-----RCRLGVAALN---NKIYVCGGYDGAIF 663 (748)
Q Consensus 601 ~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~------p~~-----r~~~~~~~~~---~~i~v~GG~~~~~~ 663 (748)
. .+.||+..+. ..+++.+....+|+.+... |.+ ...+.++... +.||+..+
T Consensus 185 d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~------ 252 (394)
T 3b7f_A 185 DPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH------ 252 (394)
T ss_dssp CTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET------
T ss_pred CCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC------
Confidence 3 3578876432 2588888888899988531 211 1223444332 66776432
Q ss_pred ccEEEEEeCCCCcEEEccC-CCCC--CcceEEEEE---CCEEEEEeCCCC-------CCCCCeEEEEeCCCCceEecCC-
Q psy10286 664 LQSVEMYDPITDEWKMIAS-MNVM--RSRVALVAN---MGKLWAIGGYDG-------VSNLPTVEVYDPSTDSWAFVAP- 729 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~-~p~~--r~~~~~~~~---~~~l~v~GG~~~-------~~~~~~v~~yd~~~~~W~~~~~- 729 (748)
..+++.+....+|+.+.. +|.. .....++.. .+.||+.....+ ......++.-.-...+|+.+..
T Consensus 253 -~gl~~s~D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g 331 (394)
T 3b7f_A 253 -CGIYRMDRREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG 331 (394)
T ss_dssp -TEEEEEETTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT
T ss_pred -CeEEEeCCCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC
Confidence 458888888899999854 4432 233333332 467887642111 0111234443333468998753
Q ss_pred CCC
Q psy10286 730 MCA 732 (748)
Q Consensus 730 ~~~ 732 (748)
+|.
T Consensus 332 lp~ 334 (394)
T 3b7f_A 332 LPT 334 (394)
T ss_dssp SCC
T ss_pred CCC
Confidence 554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.97 E-value=1.5 Score=43.88 Aligned_cols=204 Identities=13% Similarity=0.051 Sum_probs=109.6
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
...++++|+... .......+ ..-++++.. ++++||...... ...+++||+.+.+.+.+...+..+...+.+..
T Consensus 52 ~~~I~~~d~~g~-~~~~~~~~--~~p~gia~~~dG~l~vad~~~~---~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~ 125 (306)
T 2p4o_A 52 VGEIVSITPDGN-QQIHATVE--GKVSGLAFTSNGDLVATGWNAD---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPL 125 (306)
T ss_dssp TTEEEEECTTCC-EEEEEECS--SEEEEEEECTTSCEEEEEECTT---SCEEEEEECTTSCEEEEEECTTCSCEEEEEES
T ss_pred CCeEEEECCCCc-eEEEEeCC--CCceeEEEcCCCcEEEEeccCC---cceEEEEcCCCCeEEEEEeCCCccccCccccc
Confidence 356888988764 32222222 122344443 677888764211 13588999988888776665555555555544
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCe---EEEccC----CCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQ---WRIVKS----MQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYD 624 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~----~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd 624 (748)
++.+|+.-. ....++++|+.+.. |...+. .+.. ....++..-++.+|+.--. .+.+++||
T Consensus 126 ~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~-----~~~I~~~~ 195 (306)
T 2p4o_A 126 SDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE-----KMLLLRIP 195 (306)
T ss_dssp SSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-----TTEEEEEE
T ss_pred CCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCC-----CCEEEEEE
Confidence 567787642 12489999998653 322111 1111 1112233345688887543 35799999
Q ss_pred CCC-CcE---EEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEEC---
Q psy10286 625 PKT-DEW---TSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM--- 696 (748)
Q Consensus 625 ~~~-~~W---~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--- 696 (748)
+.. .+. ....... .-.++++- +|.+|+.-.. .+.|.+||+. .+...+...+.+......+.++
T Consensus 196 ~~~~g~~~~~~~~~~~~---~P~gi~vd~dG~l~va~~~-----~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~ 266 (306)
T 2p4o_A 196 VDSTDKPGEPEIFVEQT---NIDDFAFDVEGNLYGATHI-----YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE 266 (306)
T ss_dssp BCTTSCBCCCEEEEESC---CCSSEEEBTTCCEEEECBT-----TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred eCCCCCCCccEEEeccC---CCCCeEECCCCCEEEEeCC-----CCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence 865 221 1111111 11233333 6788887532 2579999986 4444443333332233333332
Q ss_pred ---CEEEEEeC
Q psy10286 697 ---GKLWAIGG 704 (748)
Q Consensus 697 ---~~l~v~GG 704 (748)
+.|||...
T Consensus 267 ~d~~~LyVt~~ 277 (306)
T 2p4o_A 267 GDCTAIYVVTN 277 (306)
T ss_dssp TTTTEEEEEEC
T ss_pred CCCCEEEEECC
Confidence 68998754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.35 Score=48.82 Aligned_cols=141 Identities=16% Similarity=0.077 Sum_probs=73.6
Q ss_pred ceEEEEeCCCCceEEccCCCccc-ceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC----ccee
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLR-SRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK----RSAV 549 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~----r~~~ 549 (748)
..+..+|+.+++....-.++... .-+.++.. ++ .+|+.++. ...++++|+.+.+-...-+.+.+ ..-+
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK-----SESLVKIDLVTGETLGRIDLSTPEERVKSLF 85 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETT-----TTEEEEEETTTCCEEEEEECCBTTEEEECTT
T ss_pred CeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCC-----CCeEEEEECCCCCeEeeEEcCCccccccccc
Confidence 57889999887654332222210 11223332 44 67877653 24799999988765432222110 0112
Q ss_pred EEEEE-CC-EEEEEeCCC---CCC---CCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCe
Q psy10286 550 GAAAL-ND-KLYVCGGYD---GVS---SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDS 619 (748)
Q Consensus 550 ~~~~~-~~-~iyv~GG~~---~~~---~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~ 619 (748)
.++.. ++ .+|+.++.. ... .-..+..||+.+.+....-+.+ ..-..++.. ++ .+|+.+ ..
T Consensus 86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~--------~~ 155 (337)
T 1pby_B 86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLG--------RD 155 (337)
T ss_dssp CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEES--------SS
T ss_pred ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCC--CCcceeEECCCCCEEEEeC--------Ce
Confidence 23333 44 677764210 000 1368999999887754332222 112233332 44 466662 35
Q ss_pred EEEEECCCCcEEE
Q psy10286 620 VERYDPKTDEWTS 632 (748)
Q Consensus 620 ~~~yd~~~~~W~~ 632 (748)
++.+|+.+.+-..
T Consensus 156 i~~~d~~~~~~~~ 168 (337)
T 1pby_B 156 LHVMDPEAGTLVE 168 (337)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEECCCCcEee
Confidence 9999998876543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=1.8 Score=49.03 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=72.8
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC--------cceeEEEEECCEEEEEeCCCCCCCCceE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK--------RSAVGAAALNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (748)
-++.++.||+.... ..++.+|..+.+ |+.-...+.. ....+.++.+++||+... -..+
T Consensus 62 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l 129 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRL 129 (668)
T ss_dssp CEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEE
T ss_pred CEEECCEEEEECCC------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEE
Confidence 35679999997652 468999988764 8875433211 011234556889987542 1478
Q ss_pred EEEeCCCCe--EEEccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEc
Q psy10286 574 ECYEPDKDQ--WRIVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSV 633 (748)
Q Consensus 574 ~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~ 633 (748)
+.+|..+.+ |+.-..-+.. ....+.++.++.+|+-.+.........++.||+.+.+ |+.-
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 999988775 8875432211 2223445678888875432222234579999998765 8763
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=1.4 Score=43.05 Aligned_cols=219 Identities=11% Similarity=0.038 Sum_probs=119.2
Q ss_pred eEEEEeCCCCceEEccC---CCcc-cceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEE
Q psy10286 478 TVEVFDPLVGRWQMAEA---MSML-RSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~---~~~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 551 (748)
.++++|........... +..+ ..-+++++. ++.||+.-.. ...+.+||+....-..+.+... ..-+++
T Consensus 11 ~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~-~~p~~i 84 (267)
T 1npe_A 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS-----EPSIGRASLHGGEPTTIIRQDL-GSPEGI 84 (267)
T ss_dssp EEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT-----TTEEEEEESSSCCCEEEECTTC-CCEEEE
T ss_pred eEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC-----CCEEEEEecCCCCcEEEEECCC-CCccEE
Confidence 56667665543321111 1111 223455554 5789987542 3579999988764333221111 123445
Q ss_pred EEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 552 AAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 552 ~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
+.. ++.||+.-.. .+.+.++|+....-+.+.+....+ -..+++. ++.||+..... ....++++++..
T Consensus 85 a~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~-P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg 155 (267)
T 1npe_A 85 ALDHLGRTIFWTDSQ-----LDRIEVAKMDGTQRRVLFDTGLVN-PRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDG 155 (267)
T ss_dssp EEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSCSS-EEEEEEETTTTEEEEEECCS---SSCEEEEEETTS
T ss_pred EEEecCCeEEEEECC-----CCEEEEEEcCCCCEEEEEECCCCC-ccEEEEeeCCCEEEEEECCC---CCcEEEEEecCC
Confidence 543 5799998642 357889998754433332211111 1233443 68999986431 124788898865
Q ss_pred CcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEc-cCCCCCCcceEEEEECCEEEEEeC
Q psy10286 628 DEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI-ASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
..-+.+..... ..-.+++.- +++||+.-.. .+.|+++|+....-..+ .....| .+++..++.||+...
T Consensus 156 ~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~~P---~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 156 TNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAG-----THRAECLNPAQPGRRKVLEGLQYP---FAVTSYGKNLYYTDW 226 (267)
T ss_dssp CCCEEEECTTC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTEEEEEEEEECCCSE---EEEEEETTEEEEEET
T ss_pred CCcEEEEECCC-CCCcEEEEcCCCCEEEEEECC-----CCEEEEEecCCCceEEEecCCCCc---eEEEEeCCEEEEEEC
Confidence 44333321111 222344443 5789988643 36899999876432222 222222 455566899999753
Q ss_pred CCCCCCCCeEEEEeCCCCceE
Q psy10286 705 YDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~ 725 (748)
. .+.|.++|+.+++-.
T Consensus 227 ~-----~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 227 K-----TNSVIAMDLAISKEM 242 (267)
T ss_dssp T-----TTEEEEEETTTTEEE
T ss_pred C-----CCeEEEEeCCCCCce
Confidence 2 247999999887654
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=1.3 Score=46.97 Aligned_cols=200 Identities=15% Similarity=0.236 Sum_probs=108.4
Q ss_pred eEEEEeCCCCceEEc--cCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEE------------EccCC-
Q psy10286 478 TVEVFDPLVGRWQMA--EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN------------KVSPM- 542 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~------------~~~~~- 542 (748)
..|.||..+++.... +.+| .. -++....+++|+|-| +..|+||+.+++=. ..+..
T Consensus 168 ~yw~yd~~~~~~~~~~w~gi~--~i-DAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~gyPk~is~~w~~c~~~g 237 (460)
T 1qhu_A 168 RKWFWDLTTGTKKERSWPAVG--NC-TSALRWLGRYYCFQG-------NQFLRFNPVSGEVPPGYPLDVRDYFLSCPGRG 237 (460)
T ss_dssp EEEEEETTTTEEEEECCTTSC--CC-SEEEEETTEEEEEET-------TEEEEECTTTCCCCTTCCEEHHHHTSCCTTCC
T ss_pred cEEEEecccceeecccCCCCC--cc-chheeeCCceEEEEC-------CEEEEEcCccCcccCCCCcchhhcccCCCCCC
Confidence 467777776544321 2222 22 344445789999988 57888988765311 11110
Q ss_pred -----------------CCCccee-EEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEE--Ec----cCCCCCCcceE
Q psy10286 543 -----------------CFKRSAV-GAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWR--IV----KSMQKHRSAGG 597 (748)
Q Consensus 543 -----------------~~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~----~~~~~~r~~~~ 597 (748)
..+.... ++.. .+|++|.|-| +..|++|...+.+. .+ +.+|. .--+
T Consensus 238 ~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg-------~~yWR~~~~~~~~~p~~Is~~WpglP~--~IDA 308 (460)
T 1qhu_A 238 HRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDA 308 (460)
T ss_dssp SCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET-------TEEEECTTGGGCCCCEEGGGTCTTSCS--SCSE
T ss_pred CccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC-------CEEEEEecCCCCcCccchhhhccCCCC--CCcE
Confidence 0011122 3333 4789999988 45677766543321 11 12332 2334
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc----------CCCCC--CcceeEEEE---CCEEEEEeccCCCc
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK----------PMLTK--RCRLGVAAL---NNKIYVCGGYDGAI 662 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----------~~p~~--r~~~~~~~~---~~~i~v~GG~~~~~ 662 (748)
+...++++|+|=|. .+|+|+..++ .+.+. .+|.. ....-++.. ++++|++-|
T Consensus 309 Af~~~~~~yfFkG~-------~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~~~~~~ktyfFkG----- 375 (460)
T 1qhu_A 309 AFSWEDKLYLIQDT-------KVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG----- 375 (460)
T ss_dssp EEEETTEEEEEETT-------EEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-----
T ss_pred EEEECCeEEEEeCC-------EEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEEeCCCCEEEEEEC-----
Confidence 44568999999874 7899986531 22222 12222 122334433 589999988
Q ss_pred cccEEEEEeCCCC---cEEEccCCCCCCcceEEEE------------ECCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 663 FLQSVEMYDPITD---EWKMIASMNVMRSRVALVA------------NMGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 663 ~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~------------~~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+..|.||.... .|...+.+|. .- .++.. .++.+|+|-| +..+.||..
T Consensus 376 --~~ywryd~~~~Pr~i~~~~~gi~~-~v-dAaf~~~~~~~~~~~~~~~~~~yfF~g-------~~y~~~~~~ 437 (460)
T 1qhu_A 376 --RRLWWLDLKSGAQATWTELPWPHE-KV-DGALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHV 437 (460)
T ss_dssp --TEEEEEEGGGGGGCCCEEECCSCS-CC-SEEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSH
T ss_pred --CEEEEEECCCCccchhhhCCCCCC-Cc-CEEEecccccCcccccccCCeEEEEEC-------CEEEEEcCh
Confidence 68899997632 1222222221 12 23333 4678999977 467778764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.42 Score=50.11 Aligned_cols=184 Identities=10% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCccceEEEEeCCCCc------eE-EccCCC-cccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC
Q psy10286 473 GDSLSTVEVFDPLVGR------WQ-MAEAMS-MLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM 542 (748)
Q Consensus 473 g~~~~~~~~yd~~~~~------W~-~~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~ 542 (748)
+..-..+..||..+.+ -. .+.... ....-.+++.. + +.+++.|+.+ ..+..||..+.+....-..
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~ 206 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWDLKAKKEVIHLSY 206 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEETTTTEEEEEECC
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEECCCCCcceEEec
Confidence 3334568888888765 11 111111 11112233333 3 5778887754 3588999988765443332
Q ss_pred CC-----CcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcc-eEEEEE--CCEEEEEccC
Q psy10286 543 CF-----KRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSA-GGVIAF--DSYVYALGGH 611 (748)
Q Consensus 543 ~~-----~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~-~~~~~~--~~~iyv~GG~ 611 (748)
+. ...-.+++.. ++ .+++.|+.++.. ..+..||..+..- .+..+. ..... .+++.. ++.+++.|+.
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 207 TSPNSGIKQQLSVVEWHPKNSTRVATATGSDND--PSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS--CCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred cccccccCCceEEEEECCCCCCEEEEEECCCCC--ceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeC
Confidence 21 1222233333 33 577777755321 2577888876431 111121 11111 222222 5777788876
Q ss_pred CCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC-EEEEEeccCCCccccEEEEEeCCCC
Q psy10286 612 DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 612 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
++ .+..||..+.+-...-...... -.+++.. ++ .+++.|+.+ ..+.+||..+.
T Consensus 284 dg-----~v~~wd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~l~s~~~d-----~~i~iw~~~~~ 338 (416)
T 2pm9_A 284 DN-----TVLLWNPESAEQLSQFPARGNW-CFKTKFAPEAPDLFACASFD-----NKIEVQTLQNL 338 (416)
T ss_dssp SS-----EEEEECSSSCCEEEEEECSSSC-CCCEEECTTCTTEEEECCSS-----SEEEEEESCCC
T ss_pred CC-----CEEEeeCCCCccceeecCCCCc-eEEEEECCCCCCEEEEEecC-----CcEEEEEccCC
Confidence 43 6888998776533221111111 1122222 34 677887754 35677776543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.62 Score=49.23 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=121.0
Q ss_pred ceEeecCCCCceeeccc---c--cccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEE
Q psy10286 439 TVEVFDPLVGRWQMAEE---E--TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYA 513 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~---~--~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv 513 (748)
++..||..+++...+-. . .+....+..++.....|..-..+..+|..+++-...- ........+...++.+.+
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~--~~h~~~v~~~s~~~~~l~ 203 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TSHSARVGSLSWNSYILS 203 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE--eCCCCceEEEeeCCCEEE
Confidence 68899998887654322 1 1222233444444444444467888998887543322 212222334445677777
Q ss_pred EccCCCCCCCCeEEEEECCCCeEEEcc-CCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCC
Q psy10286 514 FGGYNGSERLSTVEEFDPVRRVWNKVS-PMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQ 590 (748)
Q Consensus 514 ~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~ 590 (748)
.|+.+ ..+..+|..+....... .-...........-++...+.||.+ +.+..+|..+.. +..+....
T Consensus 204 sgs~d-----~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-----~~v~i~~~~~~~~~~~~~~~~~ 273 (420)
T 4gga_A 204 SGSRS-----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFT 273 (420)
T ss_dssp EEETT-----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCCSSCSCCSEEEC
T ss_pred EEeCC-----CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecc-----ccceEEeeccccccceeeeeec
Confidence 78754 35677776654322111 0011111111111255666666654 345666665432 11111111
Q ss_pred CCCcc-eEEEEE--CCEEEEE-ccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccc
Q psy10286 591 KHRSA-GGVIAF--DSYVYAL-GGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFL 664 (748)
Q Consensus 591 ~~r~~-~~~~~~--~~~iyv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~ 664 (748)
..... .+.+.. +..+++. ||..+ ..+..||..+.+-...-... ....+++.. ++.+++.+|...
T Consensus 274 ~~~~~V~~~~~~p~~~~~la~~~gs~D----~~I~iwd~~t~~~~~~~~~~--~~v~~~~~~~~~~~lv~~sg~~d---- 343 (420)
T 4gga_A 274 QHQGAVKAVAWCPWQSNVLATGGGTSD----RHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELISGHGFAQ---- 343 (420)
T ss_dssp CCSSCEEEEEECTTCTTEEEEEECTTT----CEEEEEETTTTEEEEEEECS--SCEEEEEEETTTTEEEEEECTTT----
T ss_pred ccCCceeeeeeCCCcccEEEEEeecCC----CEEEEEeCCccccceeeccc--cceeeeeecCCCCeEEEEEecCC----
Confidence 11111 112221 3444444 44322 35888998887644332211 111222222 455655555432
Q ss_pred cEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 665 QSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
+.|.+||..+.+ .+..+.........+.+ +++.++.||.++ .|.++|...
T Consensus 344 ~~I~iwd~~~~~--~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~-----tvriWdv~~ 395 (420)
T 4gga_A 344 NQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADE-----TLRLWRCFE 395 (420)
T ss_dssp CCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSCEEEEETTT-----EEEEECCSC
T ss_pred CEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEECCC
Confidence 468889987653 33333221222222223 677888888553 577777643
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.82 E-value=1.8 Score=43.41 Aligned_cols=208 Identities=11% Similarity=0.056 Sum_probs=112.0
Q ss_pred ceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCC
Q psy10286 488 RWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYD 565 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~ 565 (748)
..+.+..+|......++++. ++.||+.--. ...+++||+.... ......+ ..-++++.. +|++|+.....
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~lyv~d~~-----~~~I~~~d~~g~~-~~~~~~~--~~p~gia~~~dG~l~vad~~~ 92 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGTIFVTNHE-----VGEIVSITPDGNQ-QIHATVE--GKVSGLAFTSNGDLVATGWNA 92 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSCEEEEETT-----TTEEEEECTTCCE-EEEEECS--SEEEEEEECTTSCEEEEEECT
T ss_pred CceEeEeCCCCCCcceEEECCCCCEEEEeCC-----CCeEEEECCCCce-EEEEeCC--CCceeEEEcCCCcEEEEeccC
Confidence 34444444444444455543 6779987532 2468999988753 2222222 233444443 67898875321
Q ss_pred CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCc---EEEccC----CC
Q psy10286 566 GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDE---WTSVKP----ML 637 (748)
Q Consensus 566 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~----~p 637 (748)
. ...++.||+.+.+.+.+...+..+.....+.. ++.+|+.... ...++++|+.+.. |..-+. .+
T Consensus 93 ~---~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~-----~g~i~~~d~~~~~~~v~~~~~~~~~~~~ 164 (306)
T 2p4o_A 93 D---SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY-----RGAIWLIDVVQPSGSIWLEHPMLARSNS 164 (306)
T ss_dssp T---SCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT-----TTEEEEEETTTTEEEEEEECGGGSCSST
T ss_pred C---cceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC-----CCeEEEEeCCCCcEeEEEECCccccccc
Confidence 1 12588899888888777666554544444433 5677776432 2479999998652 211111 11
Q ss_pred CC--CcceeEEEECCEEEEEeccCCCccccEEEEEeCCC-CcE---EEccCCCCCCcceEEEE-ECCEEEEEeCCCCCCC
Q psy10286 638 TK--RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPIT-DEW---KMIASMNVMRSRVALVA-NMGKLWAIGGYDGVSN 710 (748)
Q Consensus 638 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W---~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~ 710 (748)
.. ....++..-++.+|+.--. .+.|++||... .+. ..+.....+ .++++ -+|+|||.-..
T Consensus 165 ~~~~~~pngis~dg~~lyv~d~~-----~~~I~~~~~~~~g~~~~~~~~~~~~~P---~gi~vd~dG~l~va~~~----- 231 (306)
T 2p4o_A 165 ESVFPAANGLKRFGNFLYVSNTE-----KMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHI----- 231 (306)
T ss_dssp TCCSCSEEEEEEETTEEEEEETT-----TTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBT-----
T ss_pred cCCCCcCCCcCcCCCEEEEEeCC-----CCEEEEEEeCCCCCCCccEEEeccCCC---CCeEECCCCCEEEEeCC-----
Confidence 11 1223333335678887532 36899999864 221 111111111 22233 36788887431
Q ss_pred CCeEEEEeCCCCceE
Q psy10286 711 LPTVEVYDPSTDSWA 725 (748)
Q Consensus 711 ~~~v~~yd~~~~~W~ 725 (748)
.+.|.+||+. ++..
T Consensus 232 ~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 232 YNSVVRIAPD-RSTT 245 (306)
T ss_dssp TCCEEEECTT-CCEE
T ss_pred CCeEEEECCC-CCEE
Confidence 2468999986 4443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.31 Score=49.66 Aligned_cols=189 Identities=20% Similarity=0.297 Sum_probs=96.2
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCC--CeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVR--RVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++..++.||.+ ..+..||... ..+..+..+......-..+.. ++.+++.||.+ ..+..||..++.|
T Consensus 118 ~g~~las~s~D-----~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D-----~~i~iW~~~~~~~ 187 (330)
T 2hes_X 118 DGYYLATCSRD-----KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-----DTVRIWKDYDDDW 187 (330)
T ss_dssp TSCEEEEEETT-----SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEEEETTEE
T ss_pred CCCEEEEEeCC-----CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCC-----CeEEEEECCCCCe
Confidence 56777777754 3577888743 334433322211112222222 66777888765 3577788777777
Q ss_pred EEccCCCCCCcceEEEEE--C--CEEEEEccCCCCcccCeEEEEECCC------CcEEEccCCCC--CCcceeEEEECCE
Q psy10286 584 RIVKSMQKHRSAGGVIAF--D--SYVYALGGHDGLSIFDSVERYDPKT------DEWTSVKPMLT--KRCRLGVAALNNK 651 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~------~~W~~~~~~p~--~r~~~~~~~~~~~ 651 (748)
..+..+......-..+.+ + +..++.||.++ .+..||..+ ..|.....++. ...-.+++...+.
T Consensus 188 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~ 262 (330)
T 2hes_X 188 ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG 262 (330)
T ss_dssp EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS
T ss_pred eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC
Confidence 666544322222122222 2 44566676644 344454432 24555443332 1222223222445
Q ss_pred EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCC-Cc-ceEEEEE----CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM-RS-RVALVAN----MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 652 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~-~~~~~~~----~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
+++.||.+ ..+.+||..+..|..+...... .. ...++.. ++++++.||.++ .|.+||.++
T Consensus 263 ~l~s~~~d-----g~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-----~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGAD-----GVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG-----IVNFWSLEK 328 (330)
T ss_dssp CEEEEETT-----SCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS-----EEEEEEC--
T ss_pred EEEEEeCC-----CEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC-----cEEEEEecc
Confidence 66777754 3678888888888665332211 11 2222222 467788888553 578887654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.34 Score=50.33 Aligned_cols=243 Identities=11% Similarity=-0.062 Sum_probs=121.1
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE--E
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA--L 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~--~ 554 (748)
..+|.+|..+++..++...+..........-+++..+++..+ ..++.+|+.+.+-..+...+.......... -
T Consensus 60 ~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-----~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 134 (388)
T 3pe7_A 60 WNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-----RNLMRVDLATLEENVVYQVPAEWVGYGTWVANS 134 (388)
T ss_dssp CEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-----TEEEEEETTTCCEEEEEECCTTEEEEEEEEECT
T ss_pred ceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-----CeEEEEECCCCcceeeeechhhcccccceeECC
Confidence 468999999998887765443222111222255433333321 479999999987666655554433222222 2
Q ss_pred CCEEEEEeC---CC--------------CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCC-CCc
Q psy10286 555 NDKLYVCGG---YD--------------GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHD-GLS 615 (748)
Q Consensus 555 ~~~iyv~GG---~~--------------~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~ 615 (748)
+++.++.-- .. .......++.+|+.+++-..+..-+. ...+....- +++..++.... ...
T Consensus 135 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~~~~~~sp~dg~~l~~~~~~~~~~ 213 (388)
T 3pe7_A 135 DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQ-WLGHPIYRPYDDSTVAFCHEGPHDL 213 (388)
T ss_dssp TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESS-CEEEEEEETTEEEEEEEEECSCTTT
T ss_pred CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCc-cccccEECCCCCCEEEEEEecCCCC
Confidence 444433110 00 01133678999999887655543221 122222222 45444333322 112
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCC------
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM------ 686 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~------ 686 (748)
....++.+|+.+.....+....... ......+ +++ |+.....++ .....++.+|+.+.+-+.+...+..
T Consensus 214 ~~~~l~~~d~~~~~~~~l~~~~~~~-~~~~~~~spdg~~l~~~~~~~~-~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~ 291 (388)
T 3pe7_A 214 VDARMWLINEDGTNMRKVKTHAEGE-SCTHEFWVPDGSALVYVSYLKG-SPDRFIYSADPETLENRQLTSMPACSHLMSN 291 (388)
T ss_dssp SSCSEEEEETTSCCCEESCCCCTTE-EEEEEEECTTSSCEEEEEEETT-CCCEEEEEECTTTCCEEEEEEECCEEEEEEC
T ss_pred CcceEEEEeCCCCceEEeeeCCCCc-ccccceECCCCCEEEEEecCCC-CCcceEEEEecCCCceEEEEcCCCceeeeec
Confidence 2458999999887766664422111 1112223 555 544433222 1123599999999887766544320
Q ss_pred CcceEEEEECCEEEEEe----CCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 687 RSRVALVANMGKLWAIG----GYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 687 r~~~~~~~~~~~l~v~G----G~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
..+.....-+..|++.. |+.. .....++++|+.++..+.+.
T Consensus 292 ~~~~~~spdg~~l~~~~~~~~~~~~-~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 292 YDGSLMVGDGSDAPVDVQDDSGYKI-ENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp TTSSEEEEEECCC-------------CCCCEEEEEETTTTEEEEEE
T ss_pred CCCCeEccCCCcceeEeeecccccc-CCCCEEEEEeccCCceEEec
Confidence 01112222333444321 1111 12357999999988766553
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=95.74 E-value=0.56 Score=46.99 Aligned_cols=216 Identities=13% Similarity=0.052 Sum_probs=109.4
Q ss_pred cceEeecCCCCceeeccc-----c-cccceE-Eecc-cccccCCCccceEEEEeCCCCceEEc-cCCCc--c-cceeEEE
Q psy10286 438 STVEVFDPLVGRWQMAEE-----E-TLSNAV-ISTK-SCLTKAGDSLSTVEVFDPLVGRWQMA-EAMSM--L-RSRVGVA 505 (748)
Q Consensus 438 ~~~~~y~~~~~~W~~~~~-----~-~~~~~~-~~~~-~~~~~~g~~~~~~~~yd~~~~~W~~~-~~~~~--~-r~~~~~~ 505 (748)
..+.+||+.++++..... . .....+ +..+ +.++.... .+.++.||+. ++...+ ..... + ..-.+++
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~ 123 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA 123 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEE
Confidence 358899988888865432 1 111222 2233 44444322 2378999998 777665 33221 1 1122333
Q ss_pred EE-CCEEEEEccCCC----------CCCCCeEEEEECCCCeEEEcc-CCCCCcceeEEEEE-----CC-EEEEEeCCCCC
Q psy10286 506 VM-KNRLYAFGGYNG----------SERLSTVEEFDPVRRVWNKVS-PMCFKRSAVGAAAL-----ND-KLYVCGGYDGV 567 (748)
Q Consensus 506 ~~-~~~iyv~GG~~~----------~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~~~-----~~-~iyv~GG~~~~ 567 (748)
.. ++.+|+.....+ ......+++||+. .+...+. .... ..+.+.. ++ .+|+....
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~---~~~i~~~~~~d~dg~~l~v~~~~--- 196 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF---PNGIAVRHMNDGRPYQLIVAETP--- 196 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS---EEEEEEEECTTSCEEEEEEEETT---
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCC---cceEEEecccCCCCCEEEEEECC---
Confidence 33 678888654221 1123579999987 5554432 1111 1233333 34 57776542
Q ss_pred CCCceEEEEeCC-CCeEEE---ccCCCCC--CcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC
Q psy10286 568 SSLNTVECYEPD-KDQWRI---VKSMQKH--RSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640 (748)
Q Consensus 568 ~~~~~~~~yd~~-~~~W~~---~~~~~~~--r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 640 (748)
...+++||+. ++++.. ...++.. ..-..++.. +|.+|+.... .+.+.+||+.+.+....-..+. .
T Consensus 197 --~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----~~~i~~~d~~~g~~~~~~~~~~-~ 268 (314)
T 1pjx_A 197 --TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIRCPF-E 268 (314)
T ss_dssp --TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEECSS-S
T ss_pred --CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----CCEEEEEcCCCCcEeEEEeCCC-C
Confidence 2578889876 444322 1222221 111223332 6788887532 2469999998544221112222 1
Q ss_pred cceeEEEE-CCE-EEEEeccCCCccccEEEEEeCCCC
Q psy10286 641 CRLGVAAL-NNK-IYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 641 ~~~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
.-.+++.- ++. ||+.+..+ +.+++|++...
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~-----~~l~~~~~~~~ 300 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHEN-----NAVWKFEWQRN 300 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTT-----TEEEEEECSSC
T ss_pred CceeEEECCCCCEEEEEeCCC-----CeEEEEeCCCC
Confidence 22233322 444 77766432 47899998764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=1.3 Score=50.48 Aligned_cols=243 Identities=12% Similarity=-0.010 Sum_probs=123.4
Q ss_pred ceEEEEeCCCCceEEccCCCc---cc-ceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSM---LR-SRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVG 550 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~---~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 550 (748)
..+|+.+...+.|+.+-+... .. .......+ +|+..+++...++.....++++|..+++...... +... ..+
T Consensus 98 ~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~-~~~ 175 (710)
T 2xdw_A 98 RVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVK-FSC 175 (710)
T ss_dssp CEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEEC-SCC
T ss_pred EEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcc-cce
Confidence 456677666666665532211 11 11122222 6665555543333333479999999998765321 1111 112
Q ss_pred EEEE-CCEEEEEeCCCCC-----------CCCceEEEEeCCCCeEE--EccCCC-CCCcceEEEEE-CCEEEEEccCCCC
Q psy10286 551 AAAL-NDKLYVCGGYDGV-----------SSLNTVECYEPDKDQWR--IVKSMQ-KHRSAGGVIAF-DSYVYALGGHDGL 614 (748)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~W~--~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~ 614 (748)
.+.. ||+-++++..++. .....++.++..+.... .+-..+ .+......... +|+..+++...+.
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 255 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGC 255 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSS
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccC
Confidence 3333 5554444443322 22456888998876531 221111 12222233222 4543333332222
Q ss_pred cccCeEEEEECCC------C--cEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCC---cEEEccCC
Q psy10286 615 SIFDSVERYDPKT------D--EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD---EWKMIASM 683 (748)
Q Consensus 615 ~~~~~~~~yd~~~------~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~ 683 (748)
...+.++.+|..+ . .+..+....... ......-++.+|+.+..++ ....++.+|..+. .|+.+...
T Consensus 256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~--~~~~l~~~d~~~~~~~~~~~l~~~ 332 (710)
T 2xdw_A 256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS--PNYRLINIDFTDPEESKWKVLVPE 332 (710)
T ss_dssp SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC--TTCEEEEEETTSCCGGGCEEEECC
T ss_pred CCccEEEEEECcccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC--CCCEEEEEeCCCCCcccceeccCC
Confidence 1246899999876 4 577765322211 1222334678888875432 2467999998775 58877432
Q ss_pred CCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCc-eEec
Q psy10286 684 NVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDS-WAFV 727 (748)
Q Consensus 684 p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~-W~~~ 727 (748)
.....-..+... ++++++.+..++. ..++++|+.++. .+.+
T Consensus 333 ~~~~~~~~~~~~~~~~lv~~~~~~g~---~~l~~~~~~~g~~~~~l 375 (710)
T 2xdw_A 333 HEKDVLEWVACVRSNFLVLCYLHDVK---NTLQLHDLATGALLKIF 375 (710)
T ss_dssp CSSCEEEEEEEETTTEEEEEEEETTE---EEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEEEEcCCEEEEEEEECCE---EEEEEEECCCCCEEEec
Confidence 221122334445 7788877654432 468888985554 3444
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.87 Score=46.05 Aligned_cols=210 Identities=12% Similarity=0.070 Sum_probs=103.4
Q ss_pred CccceEEEEeC-CCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCC---e----EEEccCCCCC
Q psy10286 474 DSLSTVEVFDP-LVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRR---V----WNKVSPMCFK 545 (748)
Q Consensus 474 ~~~~~~~~yd~-~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~---~----W~~~~~~~~~ 545 (748)
..-..+..||. .+++...+...+....-.+++...+..++.|+.+ ..+..||..+. . .+.+..+...
T Consensus 76 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 150 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVK 150 (342)
T ss_dssp ETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred cCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeC
Confidence 33457899999 8887766654111222223333335556666644 46777876640 0 2222233333
Q ss_pred cceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCC-Ce--EEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeE
Q psy10286 546 RSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK-DQ--WRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~--W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 620 (748)
..-.+++...+. ++.|+.+ ..+..||..+ .. ...... +....-.+++.. ++..++.|+.++ .+
T Consensus 151 ~~v~~~~~~~~~-l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg-----~i 218 (342)
T 1yfq_A 151 NKIFTMDTNSSR-LIVGMNN-----SQVQWFRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDG-----RV 218 (342)
T ss_dssp CCEEEEEECSSE-EEEEEST-----TEEEEEESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTS-----EE
T ss_pred CceEEEEecCCc-EEEEeCC-----CeEEEEECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCC-----cE
Confidence 333344444555 5555543 4688899877 32 222211 111112233333 467777777643 35
Q ss_pred EEEECCCC--------cEEEccCCC--C---CCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC
Q psy10286 621 ERYDPKTD--------EWTSVKPML--T---KRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV 685 (748)
Q Consensus 621 ~~yd~~~~--------~W~~~~~~p--~---~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 685 (748)
..||.... ......... . .......+.+ +++.++.|+.+ ..+.+||..+.+-.. .+..
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~ 291 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-----GIISCWNLQTRKKIK--NFAK 291 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-----SCEEEEETTTTEEEE--ECCC
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-----ceEEEEcCccHhHhh--hhhc
Confidence 55444332 222111100 0 0112223333 56777777754 368899988765433 2222
Q ss_pred C--CcceEEEEECCEEEEEeCCCCC
Q psy10286 686 M--RSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 686 ~--r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
. ..-.+++ -++++++.||.++.
T Consensus 292 ~h~~~v~~~~-~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 292 FNEDSVVKIA-CSDNILCLATSDDT 315 (342)
T ss_dssp CSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred ccCCCceEec-CCCCeEEEEecCCc
Confidence 1 1122334 77888888876653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=95.69 E-value=1 Score=46.80 Aligned_cols=186 Identities=15% Similarity=0.219 Sum_probs=96.3
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEcc--CCCCCcc--eeEEEE--ECCEEEEEeCCCCCCCCceEEEEeCCCCe-
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVS--PMCFKRS--AVGAAA--LNDKLYVCGGYDGVSSLNTVECYEPDKDQ- 582 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~r~--~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 582 (748)
..++.|+.+ ..+..||..+++-...- ..+.... -.++.. .++.+++.||.+ ..+..||.....
T Consensus 171 ~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----~~v~~wd~~~~~~ 240 (380)
T 3iz6_a 171 TRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----TTVRLWDLRITSR 240 (380)
T ss_dssp SCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----SCEEEEETTTTCC
T ss_pred CEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----CeEEEEECCCCCc
Confidence 345556543 46888998887644321 2222111 112222 267788888865 357788875321
Q ss_pred -EEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCC-----CcceeEEE--ECCEEE
Q psy10286 583 -WRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK-----RCRLGVAA--LNNKIY 653 (748)
Q Consensus 583 -W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~--~~~~i~ 653 (748)
-..... ....-.+++.. ++..++.|+.++ .+..||..+..-...-..... ......+. .+++++
T Consensus 241 ~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l 313 (380)
T 3iz6_a 241 AVRTYHG--HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL 313 (380)
T ss_dssp CCEEECC--CSSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE
T ss_pred ceEEECC--cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE
Confidence 111110 00111122222 667777887754 588899887754332111111 11112222 367777
Q ss_pred EEeccCCCccccEEEEEeCCCCcEEE-ccCCCCC---CcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 654 VCGGYDGAIFLQSVEMYDPITDEWKM-IASMNVM---RSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~---r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+.|+.+ ..+.+||..+.+-.. +..+..+ +-......-+++.++.||.++ .+.+|+....
T Consensus 314 ~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~-----~i~iW~~~~~ 376 (380)
T 3iz6_a 314 FAGYSN-----GDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK-----NLKIWAFSGH 376 (380)
T ss_dssp EEECTT-----SCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTS-----CEEEEECCSS
T ss_pred EEEECC-----CCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCC-----CEEEEecCCC
Confidence 787754 368899987765432 3322221 111222223678888888654 4777777653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.86 Score=50.39 Aligned_cols=229 Identities=9% Similarity=0.042 Sum_probs=122.3
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECC--CCeEEEccCCCCCcceeE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPV--RRVWNKVSPMCFKRSAVG 550 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~~~r~~~~ 550 (748)
..+.+..+|+.+++-... ++....-|.++.. +.++|+.+. ...+..||+. +.+ .+..++.+..-..
T Consensus 175 ~~~~V~viD~~t~~v~~~--i~~g~~p~~v~~SpDGr~lyv~~~------dg~V~viD~~~~t~~--~v~~i~~G~~P~~ 244 (567)
T 1qks_A 175 DAGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRYLFVIGR------DGKVNMIDLWMKEPT--TVAEIKIGSEARS 244 (567)
T ss_dssp TTTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEET------TSEEEEEETTSSSCC--EEEEEECCSEEEE
T ss_pred CCCeEEEEECCCCeEEEE--EeCCCCccceEECCCCCEEEEEcC------CCeEEEEECCCCCCc--EeEEEecCCCCce
Confidence 346899999998764321 2222222344433 456887542 2479999995 443 3333333333334
Q ss_pred EEEE-----CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEc-c--CC--------CCCCcceEEEEECCEEEEEccCCC
Q psy10286 551 AAAL-----ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIV-K--SM--------QKHRSAGGVIAFDSYVYALGGHDG 613 (748)
Q Consensus 551 ~~~~-----~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~--~~--------~~~r~~~~~~~~~~~iyv~GG~~~ 613 (748)
++.. +| .+|+..-. -+.+.++|..+.+=... + .+ |.+|.....+..++..+++--.
T Consensus 245 ia~s~~~~pDGk~l~v~n~~-----~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~-- 317 (567)
T 1qks_A 245 IETSKMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-- 317 (567)
T ss_dssp EEECCSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--
T ss_pred eEEccccCCCCCEEEEEEcc-----CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec--
Confidence 4444 45 67665432 25677888776543222 1 11 1223332222233333333211
Q ss_pred CcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCE-EEEEeccCCCccccEEEEEeCCCCcEEE---c-cCCCCCC
Q psy10286 614 LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNK-IYVCGGYDGAIFLQSVEMYDPITDEWKM---I-ASMNVMR 687 (748)
Q Consensus 614 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~---~-~~~p~~r 687 (748)
....++..|........+...+..+..|....- +++ +|+... ..+.|.++|.++++=.. + +..|.+.
T Consensus 318 --~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 318 --ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp --TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred --CCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 135788899887766666556666776665543 344 444432 24789999999886432 3 4445553
Q ss_pred cceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCC-----ceEecCCCC
Q psy10286 688 SRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTD-----SWAFVAPMC 731 (748)
Q Consensus 688 ~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~-----~W~~~~~~~ 731 (748)
.+.....- ++.+|+.+-.. ...|.++|..+. .|+.+..++
T Consensus 391 ~g~~~~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 391 RGANFVHPTFGPVWATSHMG----DDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp TCEEEEETTTEEEEEEEBSS----SSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred cceeeECCCCCcEEEeCCCC----CCeEEEecCCCCCCccccCEEEEEEe
Confidence 34433222 36788765322 136888887663 387665544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.68 Score=46.92 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=105.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.+|+.+..+ ..+++||+.++++......+ ...-.+++.. +|++|+.+..+. .....+++||+.+......
T Consensus 55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~-~~~~~i~~~d~~~~~~~~~ 127 (333)
T 2dg1_A 55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDF-KSTGGIFAATENGDNLQDI 127 (333)
T ss_dssp TSCEEEEETTT-----CEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTS-SSCCEEEEECTTSCSCEEE
T ss_pred CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCC-CCCceEEEEeCCCCEEEEE
Confidence 67788877532 47999999998877653211 1223344443 778888754321 1225799999988876532
Q ss_pred -cCCCCCCcceEEEEE-CCEEEEEccCC-CCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC-EEEEEeccCCC
Q psy10286 587 -KSMQKHRSAGGVIAF-DSYVYALGGHD-GLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN-KIYVCGGYDGA 661 (748)
Q Consensus 587 -~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~ 661 (748)
........-..++.. ++.+|+..... .......++++|+.+.+...+... .....+.+.- ++ .+|+....
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~dg~~l~v~~~~--- 202 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--ISVANGIALSTDEKVLWVTETT--- 202 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGG---
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CCcccceEECCCCCEEEEEeCC---
Confidence 222111111222222 67888765321 111234799999988776654211 0111233322 34 57777532
Q ss_pred ccccEEEEEeCCC--CcEEEcc-----CCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 662 IFLQSVEMYDPIT--DEWKMIA-----SMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 662 ~~~~~v~~yd~~~--~~W~~~~-----~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
.+.+++||..+ .....+. ..+....-.+++.- ++++|+.... ...+.+||+....-..
T Consensus 203 --~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----~~~v~~~d~~g~~~~~ 268 (333)
T 2dg1_A 203 --ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQ 268 (333)
T ss_dssp --GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEE
T ss_pred --CCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----CCEEEEECCCCCEEEE
Confidence 25789999854 2333221 11111111222322 5778886531 1368889886544333
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=95.67 E-value=1.4 Score=46.05 Aligned_cols=215 Identities=15% Similarity=0.110 Sum_probs=102.7
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
.-..+..||..+++-...-.- ....-.+++.. ++..++.|+.+ ..+..||..+.+....-.... .-.+++.
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~~~--~v~~~~~ 214 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSLTLSIED--GVTTVAV 214 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSS--CEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCeeEEEEEcCC--CcEEEEE
Confidence 345688888887654322110 11111223332 55566677644 468889998886543322211 1122223
Q ss_pred E--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-----CCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEE
Q psy10286 554 L--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-----QKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYD 624 (748)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd 624 (748)
. ++++++.|+.+ ..+..||..+..-...-.. ...... .+++.. ++..++.|+.++ .+..||
T Consensus 215 ~~~~~~~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~-----~v~~wd 284 (393)
T 1erj_A 215 SPGDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-----SVKLWN 284 (393)
T ss_dssp CSTTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEE
T ss_pred ECCCCCEEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC-----EEEEEE
Confidence 2 67788888865 3578889887654322110 001111 122222 566777777643 577788
Q ss_pred CCCCcEEEccCCC----------CCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEE
Q psy10286 625 PKTDEWTSVKPML----------TKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVAL 692 (748)
Q Consensus 625 ~~~~~W~~~~~~p----------~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (748)
..+..-......+ ........+.+ ++..++.||.+ ..+.+||..+.+-.. .+.........
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~iwd~~~~~~~~--~l~~h~~~v~~ 357 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGNPLL--MLQGHRNSVIS 357 (393)
T ss_dssp C---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCCEEE--EEECCSSCEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCeEEE--EECCCCCCEEE
Confidence 7653221110000 00001111222 45666777654 468889987765322 11111122222
Q ss_pred EE-E-------CCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 693 VA-N-------MGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 693 ~~-~-------~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
+. . ++.+++.||.++ .+.++|.
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~Dg-----~i~iW~~ 387 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSGDC-----KARIWKY 387 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEETTS-----EEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECCCC-----cEEECcc
Confidence 22 2 367888888653 4566554
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.72 Score=43.35 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=84.3
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEE--Ec----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN--KV----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (748)
+++..+|.+|+|=| ..+|+++.....+. .+ +.+|.. -. ++... ++++|+|-| +.+|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~-iD-Aa~~~~~~~~iyfFkG-------~~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRG-------RKFW 91 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCCC-cc-EEEEeccCCcEEEEcc-------CEEE
Confidence 44557999999977 46888887654432 22 344532 22 23333 689999988 5678
Q ss_pred EEeCCCCeE---EEccCCCCCC--cceEEE-EE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE-----c----cCCC
Q psy10286 575 CYEPDKDQW---RIVKSMQKHR--SAGGVI-AF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----V----KPML 637 (748)
Q Consensus 575 ~yd~~~~~W---~~~~~~~~~r--~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~----~~~p 637 (748)
+|+..+-.- ..+..+..|. ..--+| .. ++++|+|-|. ..|+||..+++-.. + +.+|
T Consensus 92 ~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG~-------~ywr~d~~~~~~d~gyPr~i~~~~~Gip 164 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN-------QVWRYDDTNHIMDKDYPRLIEEDFPGIG 164 (207)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT-------EEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeCC-------EEEEEeCcCccccCCCCccHHHcCCCCC
Confidence 886432110 2222221221 122223 22 4899999884 79999987654221 1 1122
Q ss_pred CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 638 TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 638 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
..-.++...++++|++-| +..|.||..+++=.
T Consensus 165 --~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 165 --DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 196 (207)
T ss_dssp --SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred --CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence 222344456899999987 68899998876543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=1.1 Score=49.82 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=70.9
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEEC-CCC--eEEEccCCCCC--------cceeEEEE--ECCE----EEEEeCCCC
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDP-VRR--VWNKVSPMCFK--------RSAVGAAA--LNDK----LYVCGGYDG 566 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~-~t~--~W~~~~~~~~~--------r~~~~~~~--~~~~----iyv~GG~~~ 566 (748)
-++.++.||+.+.. ...++.+|. .+. .|+.-...+.. ....+.++ .+++ ||+...
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--- 129 (599)
T 1w6s_A 58 PLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--- 129 (599)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT---
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC---
Confidence 35669999998652 246899999 766 48875443211 11123444 5777 887532
Q ss_pred CCCCceEEEEeCCCCe--EEEccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEcc
Q psy10286 567 VSSLNTVECYEPDKDQ--WRIVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVK 634 (748)
Q Consensus 567 ~~~~~~~~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~ 634 (748)
-..+..+|..+.+ |+.-..-+.. ....+-++.++.+|+-.+.........++.||..+.+ |+.-.
T Consensus 130 ---dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 130 ---DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp ---TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ---CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 1478999988775 8764321111 1122335568888764432111123579999998765 87643
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.96 Score=46.07 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=93.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE---ECCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA---LNDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
++..++.|+.+ ..+..||..+.+......-.. .-.+++. -++..++.|+.+ ..+..||..+.+-.
T Consensus 97 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 97 DGSKVFTASCD-----KTAKMWDLSSNQAIQIAQHDA--PVKTIHWIKAPNYSCVMTGSWD-----KTLKFWDTRSSNPM 164 (368)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECSS--CEEEEEEEECSSCEEEEEEETT-----SEEEEECSSCSSCS
T ss_pred CCCEEEEEcCC-----CcEEEEEcCCCCceeeccccC--ceEEEEEEeCCCCCEEEEccCC-----CcEEEEECCCCcEE
Confidence 56666677644 478899999887655432221 2223332 266777788755 46888888765421
Q ss_pred EccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEEC----CEEEEEecc
Q psy10286 585 IVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAALN----NKIYVCGGY 658 (748)
Q Consensus 585 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~----~~i~v~GG~ 658 (748)
.. +..+....+.....+.+++.++. ..+..||..... +..+...............+ ...++.|+.
T Consensus 165 ~~--~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (368)
T 3mmy_A 165 MV--LQLPERCYCADVIYPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI 236 (368)
T ss_dssp EE--EECSSCEEEEEEETTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred EE--EecCCCceEEEecCCeeEEEeCC------CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence 11 11122223334445555544432 357778876543 33332211111111112222 233666665
Q ss_pred CCCccccEEEEEeCCCCcE-----EEccC--C--CCCCc----ceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 659 DGAIFLQSVEMYDPITDEW-----KMIAS--M--NVMRS----RVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 659 ~~~~~~~~v~~yd~~~~~W-----~~~~~--~--p~~r~----~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+ ..+.+||.....- ..-+. . ..... ....+.+ ++++++.||.++ .+.+||..++.
T Consensus 237 d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-----~i~iwd~~~~~ 306 (368)
T 3mmy_A 237 E-----GRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-----RFSFWDKDART 306 (368)
T ss_dssp T-----SEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS-----CEEEEETTTTE
T ss_pred C-----CcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC-----eEEEEECCCCc
Confidence 4 4677888766421 11000 0 00000 1222223 577778887553 58899988764
Q ss_pred e
Q psy10286 724 W 724 (748)
Q Consensus 724 W 724 (748)
-
T Consensus 307 ~ 307 (368)
T 3mmy_A 307 K 307 (368)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=95.58 E-value=1.9 Score=45.04 Aligned_cols=187 Identities=11% Similarity=0.073 Sum_probs=106.8
Q ss_pred eEEEEECCC--CeEEEccCCCCCcceeEEEEE---CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC---CCC--C-
Q psy10286 525 TVEEFDPVR--RVWNKVSPMCFKRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM---QKH--R- 593 (748)
Q Consensus 525 ~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~--r- 593 (748)
-+++++... .+|+...+.+....-++++.. ++.||+.+.... .-..+++.+....+|+.+... +.. +
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~--~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~ 109 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGH--LGPTVFRSDDGGGNWTEATRPPAFNKAPEGE 109 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC----CCEEEEEESSTTSCCEECSBCCCCCCCC---
T ss_pred ceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCC--CCccEEEeCCCCCCceECCccccCCCccccc
Confidence 366777654 689876432223333444443 467887654211 112578887788899988632 211 1
Q ss_pred ------cceEEEEE----CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC---CC--------------CCcceeEE
Q psy10286 594 ------SAGGVIAF----DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM---LT--------------KRCRLGVA 646 (748)
Q Consensus 594 ------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---p~--------------~r~~~~~~ 646 (748)
.-.+++.. .+.||+.+. ...+++.+....+|+.+... |. ....++++
T Consensus 110 ~~~~~~~i~~l~~~~~~~~~~l~~g~~------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~ 183 (394)
T 3b7f_A 110 TGRVVDHVFWLTPGHASEPGTWYAGTS------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSIL 183 (394)
T ss_dssp -CCCCCEEEEEEECCTTSTTCEEEEEE------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEE
T ss_pred ccccccceeEEEeCCCCCCCEEEEEec------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEE
Confidence 11123332 567877543 13688998888899998532 21 11123333
Q ss_pred EE---CCEEEEEeccCCCccccEEEEEeCCCCcEEEccC------CCCC-----CcceEEEEE-C--CEEEEEeCCCCCC
Q psy10286 647 AL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS------MNVM-----RSRVALVAN-M--GKLWAIGGYDGVS 709 (748)
Q Consensus 647 ~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~------~p~~-----r~~~~~~~~-~--~~l~v~GG~~~~~ 709 (748)
.- .+.||+.++. ..+++.+-...+|+.+.. +|.+ ...+.++.. . +.||+..+
T Consensus 184 ~d~~~~~~l~vg~~~------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----- 252 (394)
T 3b7f_A 184 VDPRDPKHLYIGMSS------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----- 252 (394)
T ss_dssp ECTTCTTCEEEEEET------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-----
T ss_pred ECCCCCCEEEEEECC------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-----
Confidence 32 2567776432 357888888889998743 1211 122344433 2 67777432
Q ss_pred CCCeEEEEeCCCCceEecCC-CCC
Q psy10286 710 NLPTVEVYDPSTDSWAFVAP-MCA 732 (748)
Q Consensus 710 ~~~~v~~yd~~~~~W~~~~~-~~~ 732 (748)
..+++.+-...+|+.+.. +|.
T Consensus 253 --~gl~~s~D~G~tW~~~~~~l~~ 274 (394)
T 3b7f_A 253 --CGIYRMDRREGVWKRIGDAMPR 274 (394)
T ss_dssp --TEEEEEETTTTEEECGGGGSCT
T ss_pred --CeEEEeCCCCCcceECCCCCCC
Confidence 358888888999998864 554
|
| >3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0036 Score=52.77 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=60.9
Q ss_pred cEEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
=|+|.|+|+.|...+..|.... ..+.+|+.+...- .....++-+ +
T Consensus 6 ~V~LNVGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~---------------------------------~~~~g~~Fi-D 51 (115)
T 3kvt_A 6 RVIINVGGIRHETYKATLKKIPATRLSRLTEGMLNY---------------------------------DPVLNEYFF-D 51 (115)
T ss_dssp EEEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTE---------------------------------ETTTTEEEE-C
T ss_pred EEEEEECCEEEEecHHHHhcCCCccHHHHhcCCCCC---------------------------------CCCCCcEEE-e
Confidence 3788999999999999987542 2345555431100 011222222 5
Q ss_pred CCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhHH
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKVA 195 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l~ 195 (748)
=++..|+.+|+|+.+|++.++.+ .+..+++-|++|+|+...
T Consensus 52 Rdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~ 93 (115)
T 3kvt_A 52 RHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQ 93 (115)
T ss_dssp SCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGG
T ss_pred cChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHH
Confidence 68999999999999999987765 578899999999998754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.66 Score=53.20 Aligned_cols=191 Identities=8% Similarity=-0.042 Sum_probs=91.9
Q ss_pred eEEEEECCC-CeEEEccCC-CCCcc-eeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC----CcceE
Q psy10286 525 TVEEFDPVR-RVWNKVSPM-CFKRS-AVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH----RSAGG 597 (748)
Q Consensus 525 ~v~~yd~~t-~~W~~~~~~-~~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~ 597 (748)
.++.+|..+ .+-..+... ..... ...+. -+|+..+++..+.......++.+|+.+.+...+...... .....
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 788899887 664444321 11111 11222 455444444332222346899999999887665322111 11122
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeE--EEECC-EEEEEeccCCCccccEEEEEeCCC
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGV--AALNN-KIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
+..-+|++++.++.++ ...+|.+|.... +..+..-. ...... ..-++ .|++.+..++ .....+|..+...
T Consensus 343 ~~spdg~~~~~~~~~g---~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~-~~~~~l~~~~~~g 415 (741)
T 2ecf_A 343 RFLDDGSILWSSERTG---FQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIES-ARESQIYAVPLQG 415 (741)
T ss_dssp EECTTSCEEEEECTTS---SCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSC-TTCBEEEEEETTC
T ss_pred EECCCCeEEEEecCCC---ccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCC-CceEEEEEEEcCC
Confidence 2223667666665543 357999997666 66554321 111122 22244 5666654332 1234567776654
Q ss_pred CcEEEccCCCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 675 DEWKMIASMNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 675 ~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
..-..+.. ....+.+.. -+++.+++...+.. .-..++++|..+...+.+
T Consensus 416 ~~~~~l~~---~~~~~~~~~spdg~~l~~~~~~~~-~p~~~~l~~~~~~~~~~l 465 (741)
T 2ecf_A 416 GQPQRLSK---APGMHSASFARNASVYVDSWSNNS-TPPQIELFRANGEKIATL 465 (741)
T ss_dssp CCCEECCC---SCSEEEEEECTTSSEEEEEEEETT-EEEEEEEEETTSCEEECS
T ss_pred CCeeeccc---CCCceEEEECCCCCEEEEEecCCC-CCCeEEEEEcCCCeEEEe
Confidence 43344433 111122222 24554444332211 223678888766654443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.58 E-value=2.3 Score=43.09 Aligned_cols=218 Identities=11% Similarity=0.095 Sum_probs=118.3
Q ss_pred EEEEeCCCCceEEccCC-Cccc-ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEE-E
Q psy10286 479 VEVFDPLVGRWQMAEAM-SMLR-SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAA-L 554 (748)
Q Consensus 479 ~~~yd~~~~~W~~~~~~-~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~-~ 554 (748)
+++..-.-.+|+.+... +.+. ...++...++.+|+.|.. ..+++-+-.-.+|+.+.... .+-....++. -
T Consensus 58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~ 131 (327)
T 2xbg_A 58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALG 131 (327)
T ss_dssp EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEE
T ss_pred EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC------CeEEEECCCCCCceECccccCCCCCeEEEEEEC
Confidence 55544445689988642 2222 334455557889987632 24555444456899976431 1212233433 3
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECC-CCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPK-TDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~ 632 (748)
++.+|+.|.. ..+++-+-.-.+|+.+.... +...++++.. ++.+|++|.. ..+++-+-. ...|+.
T Consensus 132 ~~~~~~~~~~------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~------G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 132 NGSAEMITNV------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSSR------GSFYSTWEPGQTAWEP 198 (327)
T ss_dssp TTEEEEEETT------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEETT------SSEEEEECTTCSSCEE
T ss_pred CCCEEEEeCC------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEECC------CcEEEEeCCCCCceeE
Confidence 7889888752 13555444467899886432 2233444443 5667766532 235555433 678998
Q ss_pred ccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCC-CCcEEEccCC--CCCCcceEEEEE-CCEEEEEeCCCC
Q psy10286 633 VKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPI-TDEWKMIASM--NVMRSRVALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~--p~~r~~~~~~~~-~~~l~v~GG~~~ 707 (748)
+.. +.+...+.++.. ++.+|+++.. ..++..+.. -.+|+.+... +.....+.++.. ++.+|+.|+.
T Consensus 199 ~~~-~~~~~~~~~~~~~~g~~~~~~~~------G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~-- 269 (327)
T 2xbg_A 199 HNR-TTSRRLHNMGFTPDGRLWMIVNG------GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA-- 269 (327)
T ss_dssp EEC-CSSSCEEEEEECTTSCEEEEETT------TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEEST--
T ss_pred CCC-CCCCccceeEECCCCCEEEEeCC------ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCC--
Confidence 853 333444444433 5778877642 235555323 5689887532 332223333333 5788888762
Q ss_pred CCCCCeEEEEeCCCCceEecC
Q psy10286 708 VSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~ 728 (748)
..+++-.=...+|+.+.
T Consensus 270 ----g~i~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 270 ----GALLCSQDGGQTWQQDV 286 (327)
T ss_dssp ----TCEEEESSTTSSCEECG
T ss_pred ----CeEEEeCCCCcccEEcC
Confidence 13544333357899875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.51 Score=48.07 Aligned_cols=225 Identities=11% Similarity=0.184 Sum_probs=108.2
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc----cccceEEecc---cccccCCCccceEEEEeCCCCc--eEE
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE----TLSNAVISTK---SCLTKAGDSLSTVEVFDPLVGR--WQM 491 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~----~~~~~~~~~~---~~~~~~g~~~~~~~~yd~~~~~--W~~ 491 (748)
+..+++.|+... .-..+..||..++........ .+....+... +.....|..-..+..||..+++ ...
T Consensus 30 ~~~l~~~~s~~~---~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 106 (357)
T 3i2n_A 30 SAKFVTMGNFAR---GTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS 106 (357)
T ss_dssp SSEEEEEEC--C---CCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CceEEEecCccC---CCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE
Confidence 335666776421 114688888887776543221 1111122222 1222223334568888888765 222
Q ss_pred ccCCCcccceeEEEE-------ECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCC--CcceeEEEE-----EC
Q psy10286 492 AEAMSMLRSRVGVAV-------MKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCF--KRSAVGAAA-----LN 555 (748)
Q Consensus 492 ~~~~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~r~~~~~~~-----~~ 555 (748)
+.....+- .++.. -++..++.|+.+ ..+..||..+.. ...+..... .+.-.+++. -+
T Consensus 107 ~~~~~~~v--~~~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 179 (357)
T 3i2n_A 107 VKGHKEII--NAIDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE 179 (357)
T ss_dssp ECCCSSCE--EEEEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C
T ss_pred EEecccce--EEEeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC
Confidence 22111111 11211 245667777754 358888888754 233322111 122223321 36
Q ss_pred CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE----CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 556 DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF----DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+..++.|+.+ ..+..||..+..-....... ..-.+++.. ++..++.|+.++ .+..||..+.+
T Consensus 180 ~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~-- 245 (357)
T 3i2n_A 180 ERVVCAGYDN-----GDIKLFDLRNMALRWETNIK--NGVCSLEFDRKDISMNKLVATSLEG-----KFHVFDMRTQH-- 245 (357)
T ss_dssp CCEEEEEETT-----SEEEEEETTTTEEEEEEECS--SCEEEEEESCSSSSCCEEEEEESTT-----EEEEEEEEEEE--
T ss_pred CCEEEEEccC-----CeEEEEECccCceeeecCCC--CceEEEEcCCCCCCCCEEEEECCCC-----eEEEEeCcCCC--
Confidence 7777777754 47889999887743332221 122233333 466677776643 57777765421
Q ss_pred EccCCC-----CCCcc-eeEEEE-CCE-EEEEeccCCCccccEEEEEeCCC
Q psy10286 632 SVKPML-----TKRCR-LGVAAL-NNK-IYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 632 ~~~~~p-----~~r~~-~~~~~~-~~~-i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
.+..++ ..... .+++.. ++. +++.||.++ .+.+||..+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 291 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG-----GLHLWKYEY 291 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS-----EEEEEEEEC
T ss_pred cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC-----cEEEeecCC
Confidence 111111 11112 223333 455 777777653 577777654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.78 Score=47.95 Aligned_cols=261 Identities=13% Similarity=0.091 Sum_probs=125.0
Q ss_pred cceEeecCCCCcee-e---ccc-ccccceEEecccccccCCCccceEEEEeCCCC--ceEEccCCCcc-cceeEEEEE--
Q psy10286 438 STVEVFDPLVGRWQ-M---AEE-ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVG--RWQMAEAMSML-RSRVGVAVM-- 507 (748)
Q Consensus 438 ~~~~~y~~~~~~W~-~---~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~--~W~~~~~~~~~-r~~~~~~~~-- 507 (748)
..+..||..++.-. . ... ..+....+..++.....|..-..+..||..+. ....+..+... ..-.+++..
T Consensus 45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS
T ss_pred CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC
Confidence 36778877665421 1 111 11112222333333333333346788888761 11122212111 111223333
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCe------EE-EccCCC-CCcceeEEEEE-C-CEEEEEeCCCCCCCCceEEEEe
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRV------WN-KVSPMC-FKRSAVGAAAL-N-DKLYVCGGYDGVSSLNTVECYE 577 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~------W~-~~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd 577 (748)
++.+++.|+.+ ..+..||..+.+ -. ...... ....-.+++.. + +.+++.|+.+ ..+..||
T Consensus 125 ~~~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~v~iwd 194 (416)
T 2pm9_A 125 QDNVLASGGNN-----GEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSS-----NFASIWD 194 (416)
T ss_dssp STTBEEEECSS-----SCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSS-----SCEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCC-----CCEEEEE
Confidence 26677777754 357888887764 11 111111 11122233333 3 5788888754 4588999
Q ss_pred CCCCeEEEccCCCC-----CCcceEEEEE-C-CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCC-CCCcceeEEEE-
Q psy10286 578 PDKDQWRIVKSMQK-----HRSAGGVIAF-D-SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAAL- 648 (748)
Q Consensus 578 ~~~~~W~~~~~~~~-----~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~- 648 (748)
..+.+....-..+. ...-.+++.. + ..+++.|+.++. ...+..||..+..- .+..+. ........+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 195 LKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDLRNANT-PLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp TTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEEC
T ss_pred CCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeCCCCCC-CcEEeecCccCceeEEEeC
Confidence 98876544333222 1112223333 3 357777776431 12577888876431 111222 11222223333
Q ss_pred --CCEEEEEeccCCCccccEEEEEeCCCCcEEE-ccCCCCCCcceEEEEE-CC-EEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 649 --NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-IASMNVMRSRVALVAN-MG-KLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 649 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~-~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
++.+++.|+.+ ..+.+||..+.+-.. +.....+ -.++... ++ ++++.|+.+ ..+.+||..+..
T Consensus 272 ~~~~~~l~s~~~d-----g~v~~wd~~~~~~~~~~~~~~~~--v~~~~~s~~~~~~l~s~~~d-----~~i~iw~~~~~~ 339 (416)
T 2pm9_A 272 HQDEHLLLSSGRD-----NTVLLWNPESAEQLSQFPARGNW--CFKTKFAPEAPDLFACASFD-----NKIEVQTLQNLT 339 (416)
T ss_dssp SSCSSCEEEEESS-----SEEEEECSSSCCEEEEEECSSSC--CCCEEECTTCTTEEEECCSS-----SEEEEEESCCCC
T ss_pred CCCCCeEEEEeCC-----CCEEEeeCCCCccceeecCCCCc--eEEEEECCCCCCEEEEEecC-----CcEEEEEccCCC
Confidence 56788888764 468899987764332 2111111 1122222 44 688888754 357888876643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.34 Score=50.36 Aligned_cols=183 Identities=10% Similarity=-0.002 Sum_probs=99.8
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-CCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-CFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
.+++.|+.+ ..+..||..+.+....-.. .....-.+++.. ++..++.|+.+ ..+..||..++.....
T Consensus 87 ~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~ 156 (383)
T 3ei3_B 87 TTVAVGSKG-----GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVF 156 (383)
T ss_dssp TEEEEEEBT-----SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEE
T ss_pred CEEEEEcCC-----CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEE
Confidence 566667654 3588899887776554332 222222333333 34677777754 4688899988776655
Q ss_pred cCCCCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCE-EEEEeccCCC
Q psy10286 587 KSMQKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNK-IYVCGGYDGA 661 (748)
Q Consensus 587 ~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~ 661 (748)
......... .+++.. ++..++.|+.+ ..+..||.....-..+.. .......+.+ ++. +++.|+.+
T Consensus 157 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~s~~~d-- 226 (383)
T 3ei3_B 157 AKTDSWDYWYCCVDVSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKL---HKAKVTHAEFNPRCDWLMATSSVD-- 226 (383)
T ss_dssp ECCCCSSCCEEEEEEETTTTEEEEEETT-----SEEEEEETTSCEEEEEEC---SSSCEEEEEECSSCTTEEEEEETT--
T ss_pred eccCCCCCCeEEEEECCCCCEEEEECCC-----CCEEEEECCCCEEEEecc---CCCcEEEEEECCCCCCEEEEEeCC--
Confidence 433221111 222222 56677777764 468889985444333321 1122223333 344 77788754
Q ss_pred ccccEEEEEeCCC----CcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 662 IFLQSVEMYDPIT----DEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 662 ~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
..+.+||..+ ......- .....-.++... +++.++.|+.+ ..+.+||..+.
T Consensus 227 ---~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 227 ---ATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW 283 (383)
T ss_dssp ---SEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred ---CEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence 4788898876 3332221 111111222222 56777777754 36888887664
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=1 Score=41.86 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=85.4
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCC--eEE--Ec----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCce
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRR--VWN--KV----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 572 (748)
+++..+|.+|+|=| +.+|+++.... ... .+ +.+|... -++... ++++|+|-| +.
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~I--DAa~~~~~~~~~yfFkG-------~~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRKL--DSVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSC--SEEEECTTTCCEEEEET-------TE
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCCc--cEEEEECCCCeEEEEeC-------CE
Confidence 34557999999977 46889887652 222 12 3455422 123333 689999988 57
Q ss_pred EEEEeCCCCeE-EEccC--CCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-----cc-CCC-CCC
Q psy10286 573 VECYEPDKDQW-RIVKS--MQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----VK-PML-TKR 640 (748)
Q Consensus 573 ~~~yd~~~~~W-~~~~~--~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~-~~p-~~r 640 (748)
.|+|+..+-.- +.+.. +|.. ...++....++++|+|-|. ..|+||..+++-.. +. ..+ .+.
T Consensus 75 yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg~-------~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~ 147 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFPGVPL 147 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHSTTSCS
T ss_pred EEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeCC-------EEEEEeCCcccccCCCccChhhcCCCCCC
Confidence 88888543111 11222 2221 2233333237899999874 78999987764211 11 111 122
Q ss_pred cceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 641 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
.-.++...++.+|++-| +..|.||..+..
T Consensus 148 ~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~ 176 (195)
T 1itv_A 148 DTHDVFQFREKAYFCQD-------RFYWRVSSRSEL 176 (195)
T ss_dssp SCSEEEEETTEEEEEET-------TEEEEEECCTTC
T ss_pred CCCEEEEeCCeEEEEeC-------CEEEEEECCccE
Confidence 33455566899999988 578899987765
|
| >1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.61 Score=49.58 Aligned_cols=173 Identities=12% Similarity=0.177 Sum_probs=101.9
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEc--cCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe---
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV--SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--- 582 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--- 582 (748)
++++|+|-| +..|+||..+++.... +.+| . --++...+|++|.|-| +..++||+.+.+
T Consensus 158 ~~~~yfFkG-------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG-------~~y~rfd~~~~~v~~ 220 (460)
T 1qhu_A 158 DEGILFFQG-------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQG-------NQFLRFNPVSGEVPP 220 (460)
T ss_dssp SSEEEEEET-------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEET-------TEEEEECTTTCCCCT
T ss_pred CCeEEEEec-------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEEC-------CEEEEEcCccCcccC
Confidence 678899887 4789999998876532 2233 2 2355556899999988 577888876543
Q ss_pred ---------EEEccCCC------------------CCC-cceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEE--
Q psy10286 583 ---------WRIVKSMQ------------------KHR-SAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWT-- 631 (748)
Q Consensus 583 ---------W~~~~~~~------------------~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-- 631 (748)
|-.++... .+. ..-+++. .+|++|+|-|. ..|++|...+.+.
T Consensus 221 gyPk~is~~w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg~-------~yWR~~~~~~~~~p~ 293 (460)
T 1qhu_A 221 GYPLDVRDYFLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSGS-------HYWRLDTNRDGWHSW 293 (460)
T ss_dssp TCCEEHHHHTSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEETT-------EEEECTTGGGCCCCE
T ss_pred CCCcchhhcccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeCC-------EEEEEecCCCCcCcc
Confidence 21111100 011 1223333 47899999884 5777776543332
Q ss_pred Ec----cCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccC----------CCCC--CcceEEEE-
Q psy10286 632 SV----KPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS----------MNVM--RSRVALVA- 694 (748)
Q Consensus 632 ~~----~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----------~p~~--r~~~~~~~- 694 (748)
.+ +.+|.. --++...++++|++=| +.+|+|+..+. .+.+.. +|.. ...-.++.
T Consensus 294 ~Is~~WpglP~~--IDAAf~~~~~~yfFkG-------~~yw~f~~~~g-~~~~~GyPK~I~~~lGlp~~~~~~~IDAA~~ 363 (460)
T 1qhu_A 294 PIAHQWPQGPST--VDAAFSWEDKLYLIQD-------TKVYVFLTKGG-YTLVNGYPKRLEKELGSPPVISLEAVDAAFV 363 (460)
T ss_dssp EGGGTCTTSCSS--CSEEEEETTEEEEEET-------TEEEEEECSBS-CEECTTCCEEHHHHHCCCSSCCCSCCCEEEC
T ss_pred chhhhccCCCCC--CcEEEEECCeEEEEeC-------CEEEEEeCCCC-ceecCCCCeEHHHhccCCCccccCcccEEEE
Confidence 12 123322 3344456899999977 57899986531 222211 2222 11223333
Q ss_pred --ECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 695 --NMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 695 --~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
.++++|+|-| +..|.||...
T Consensus 364 ~~~~~ktyfFkG-------~~ywryd~~~ 385 (460)
T 1qhu_A 364 CPGSSRLHIMAG-------RRLWWLDLKS 385 (460)
T ss_dssp CTTCCEEEEEET-------TEEEEEEGGG
T ss_pred eCCCCEEEEEEC-------CEEEEEECCC
Confidence 2689999987 4688998764
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=2.6 Score=42.50 Aligned_cols=213 Identities=14% Similarity=0.089 Sum_probs=119.8
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCC----CeEEEc-c-CCCCCcce
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVR----RVWNKV-S-PMCFKRSA 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~~-~-~~~~~r~~ 548 (748)
+.+..+|+.+.....+-+ ....-++++.. ++.||+.... ...++++|+.+ .....+ + .+..+
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~~p--- 79 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP--- 79 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECC-----CCcEEEEECCCCCCCcccEEEEeCCCCCc---
Confidence 467888888877655422 22333555554 6789998642 35789999876 222222 1 22222
Q ss_pred eEEEE--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEE--ECCEEEEEccCCCCcccCeEEE
Q psy10286 549 VGAAA--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIA--FDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 549 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.++++ .+++||+.-.. .+.++++|+....-..+. .+..| .++++ .++.||+..... ...+++
T Consensus 80 ~glavd~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~~~~~~~~~P---~~iavdp~~g~ly~~d~~~----~~~I~~ 147 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKP---RAIVVDPVHGFMYWTDWGT----PAKIKK 147 (316)
T ss_dssp CEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEEEEECTTCCE---EEEEEETTTTEEEEEECSS----SCEEEE
T ss_pred CEEEEeecCCeEEEEECC-----CCEEEEEeCCCCceEEEEECCCCCc---ceEEeCCCCCEEEEEccCC----CCeEEE
Confidence 34444 37899998442 357889998765433332 22222 23444 378999876321 257999
Q ss_pred EECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-CCCcceEEEEECCEE
Q psy10286 623 YDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKL 699 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~l 699 (748)
+++....-+.+..... ..-.+++.- +++||+.-.. .+.|+.+|.....-..+.... ....-.++++.++.|
T Consensus 148 ~~~dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~-----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~l 221 (316)
T 1ijq_A 148 GGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 221 (316)
T ss_dssp EETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEE
T ss_pred EcCCCCCeEEEEECCC-CCceEEEEeccCCEEEEEECC-----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEE
Confidence 9987654443322111 222344443 6899998643 368999998754333332211 112235666678999
Q ss_pred EEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 700 WAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
|+.-.. ...|.++|+.++
T Consensus 222 y~~d~~-----~~~V~~~~~~~g 239 (316)
T 1ijq_A 222 FWTDII-----NEAIFSANRLTG 239 (316)
T ss_dssp EEEETT-----TTEEEEEETTTC
T ss_pred EEEECC-----CCeEEEEeCCCC
Confidence 997531 246777776544
|
| >1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.39 E-value=0.013 Score=50.15 Aligned_cols=91 Identities=14% Similarity=0.251 Sum_probs=61.9
Q ss_pred ccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 75 CDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 75 ~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
.=|+|.|+|+.|..-+..|.... ..||.. .+.. . .......++-+ +
T Consensus 13 ~~V~LNVGG~~F~t~~~TL~~~p---~S~L~~--~~~~---~-------------------------~~~~~~g~~Fi-D 58 (124)
T 1s1g_A 13 ELIVLNVSGRRFQTWRTTLERYP---DTLLGS--TEKE---F-------------------------FFNEDTKEYFF-D 58 (124)
T ss_dssp CEEEEEETTEEEEEEHHHHTTST---TSSTTS--SGGG---G-------------------------TBCSSSCSEEE-C
T ss_pred CEEEEEeCCEEEEEeHHHHhcCC---Cceecc--cCCc---c-------------------------cccCCCCcEEE-c
Confidence 35788899999999998886432 223332 0000 0 00112233333 4
Q ss_pred CCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhHH-HHHH
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKVA-DACA 199 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l~-~~c~ 199 (748)
=++..|+.+|+|+-+|++.+..+ .+..+++-|++|+|+.+. +.|+
T Consensus 59 Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 59 RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCC 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGGBCHHH
T ss_pred CChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHHHHHHH
Confidence 59999999999999999987665 588899999999999874 5543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.56 Score=53.49 Aligned_cols=242 Identities=13% Similarity=0.021 Sum_probs=126.2
Q ss_pred cceEEEEeCCCCceEEccCCCc---cc-ceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCccee
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSM---LR-SRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAV 549 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~---~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 549 (748)
...+|+.+...+.|+.+...+. .. .......+ +|+..+++...++.....++++|..+++......++.... .
T Consensus 93 ~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~ 171 (695)
T 2bkl_A 93 KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-A 171 (695)
T ss_dssp SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-C
T ss_pred EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-c
Confidence 4567888877778887754332 11 11222222 6666565443333334689999999987531111222211 2
Q ss_pred EEEE-ECCEEEEEeCCCCC--------CCCceEEEEeCCCCeE--EEccCCCCC-CcceEEEE-ECCEEEEEccCCCCcc
Q psy10286 550 GAAA-LNDKLYVCGGYDGV--------SSLNTVECYEPDKDQW--RIVKSMQKH-RSAGGVIA-FDSYVYALGGHDGLSI 616 (748)
Q Consensus 550 ~~~~-~~~~iyv~GG~~~~--------~~~~~~~~yd~~~~~W--~~~~~~~~~-r~~~~~~~-~~~~iyv~GG~~~~~~ 616 (748)
+.+. -+|+.++++..+.. .....++.++..+..- ..+...+.. ....+... -+|+..+++..++. .
T Consensus 172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~ 250 (695)
T 2bkl_A 172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-S 250 (695)
T ss_dssp CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-T
T ss_pred ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-C
Confidence 2223 26666666654432 1245688999887652 222222221 22222222 25544444433221 2
Q ss_pred cCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc---EEEccCCCCCCcceEEE
Q psy10286 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE---WKMIASMNVMRSRVALV 693 (748)
Q Consensus 617 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~~r~~~~~~ 693 (748)
...++.+|..+..|..+..-.. .....+..+|.+|+....+ .....++.+|..+.. |+.+-.......-..+.
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~~--~~~~~~~~~g~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGVG--AKYEVHAWKDRFYVLTDEG--APRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECSS--CCEEEEEETTEEEEEECTT--CTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE
T ss_pred ceEEEEEcCCCCceEEeecCCC--ceEEEEecCCcEEEEECCC--CCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE
Confidence 4578888877778887753222 1222233566666554332 224689999987654 88764322122222334
Q ss_pred EECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 694 ANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 694 ~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
..++++++.+..++. ..++++|+....-+.
T Consensus 327 ~~~~~lv~~~~~dg~---~~l~~~~~~g~~~~~ 356 (695)
T 2bkl_A 327 IVGGHLSLEYLKDAT---SEVRVATLKGKPVRT 356 (695)
T ss_dssp EETTEEEEEEEETTE---EEEEEEETTCCEEEE
T ss_pred EECCEEEEEEEECCE---EEEEEEeCCCCeeEE
Confidence 458888888765432 467888876544333
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=1.9 Score=42.83 Aligned_cols=222 Identities=12% Similarity=0.129 Sum_probs=105.9
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
+.+..+|..+++....-.+........++.. +++.++.|+.+ ..+..||..+++-...-.-... ...+...
T Consensus 45 ~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D-----g~v~iw~~~~~~~~~~~~~h~~--~~~~~~~ 117 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS-----AEVQLWDVQQQKRLRNMTSHSA--RVGSLSW 117 (318)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSS--CEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC-----CcEEEeecCCceeEEEecCccc--eEEEeec
Confidence 4688889988876654333322222222222 66777888854 4688899988864332221221 2233444
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceE-EEEECCEEEEEccCCCCcccCeEEEEECCCCcEE--
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGG-VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWT-- 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-- 631 (748)
++.+.+.|+.+ ..+..++..+................. ....++..++.|+.++ .+..||..+.+-.
T Consensus 118 ~~~~l~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~ 187 (318)
T 4ggc_A 118 NSYILSSGSRS-----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN-----LVNVWPSAPGEGGWV 187 (318)
T ss_dssp ETTEEEEEETT-----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESSCBTTBSC
T ss_pred CCCEEEEEecC-----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-----ceeEEECCCCccccc
Confidence 56666666643 234445544433222111111111111 2222556666676643 4778887764311
Q ss_pred EccCCCCCCcc-eeEEEE--CCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCC
Q psy10286 632 SVKPMLTKRCR-LGVAAL--NNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 632 ~~~~~p~~r~~-~~~~~~--~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
........... .+.+.. ++. +.+.+|.. ...+..+|.....-..................++.+++.+|..+
T Consensus 188 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d 263 (318)
T 4ggc_A 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263 (318)
T ss_dssp CSEEECCCCSCEEEEEECTTSTTEEEEEECTT----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT
T ss_pred ceeeecccCCceEEEEecCCCCcEEEEEecCC----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCC
Confidence 11111111111 112221 233 33344422 24677888877665444322222222222223566666655432
Q ss_pred CCCCCeEEEEeCCCCc
Q psy10286 708 VSNLPTVEVYDPSTDS 723 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~ 723 (748)
..+.+||..+++
T Consensus 264 ----~~i~iwd~~~~~ 275 (318)
T 4ggc_A 264 ----NQLVIWKYPTMA 275 (318)
T ss_dssp ----CCEEEEETTTCC
T ss_pred ----CEEEEEECCCCc
Confidence 358899987654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=95.34 E-value=1.3 Score=45.98 Aligned_cols=192 Identities=12% Similarity=0.054 Sum_probs=95.9
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCe------EEEccCCCCC---cceeEEEEE-----CCEE-EEEeCCCCCCCCceEE
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRV------WNKVSPMCFK---RSAVGAAAL-----NDKL-YVCGGYDGVSSLNTVE 574 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~------W~~~~~~~~~---r~~~~~~~~-----~~~i-yv~GG~~~~~~~~~~~ 574 (748)
..++.|+.+ ..+..||..+.+ +..+...+.. ..-.+++.. ++.. ++.|+.+ ..+.
T Consensus 82 ~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d-----g~i~ 151 (397)
T 1sq9_A 82 CLVATTSFS-----GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK-----GTTY 151 (397)
T ss_dssp EEEEEEETT-----SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT-----SCEE
T ss_pred cEEEEEcCC-----CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC-----CcEE
Confidence 777777754 357777777665 6665443211 222233333 4555 7777754 3566
Q ss_pred EEeCCC------Ce---EEEccCC--------CCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC
Q psy10286 575 CYEPDK------DQ---WRIVKSM--------QKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636 (748)
Q Consensus 575 ~yd~~~------~~---W~~~~~~--------~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 636 (748)
.||..+ .. |.....+ .....-.+++.. ++ +++.|+.+ ..+..||..+.+....-..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNN-----GTVQISELSTLRPLYNFES 225 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTT-----SEEEEEETTTTEEEEEEEC
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCC-----CcEEEEECCCCceeEEEec
Confidence 777655 21 1110011 111112233333 56 66777654 3688999987654332111
Q ss_pred -CCC---CcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-ccCCCC----------CCcceEEEEE--CC
Q psy10286 637 -LTK---RCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-IASMNV----------MRSRVALVAN--MG 697 (748)
Q Consensus 637 -p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~----------~r~~~~~~~~--~~ 697 (748)
... ......+.+ ++.+++.|+.++. ...+.+||..+.+-.. +...+. .......+.. ++
T Consensus 226 ~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~--~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 303 (397)
T 1sq9_A 226 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNS--FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 303 (397)
T ss_dssp CC---CCCCCEEEEEECSSTTEEEEEEEETT--EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred cccccccCCccceEEECCCCCEEEEEecCCC--CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC
Confidence 001 222223333 5667777764311 1478999987764322 211000 1222222333 57
Q ss_pred EEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 698 KLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 698 ~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
++++.|+.+ ..+.+||..+.+-
T Consensus 304 ~~l~~~~~d-----g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 304 ETLCSAGWD-----GKLRFWDVKTKER 325 (397)
T ss_dssp SEEEEEETT-----SEEEEEETTTTEE
T ss_pred CEEEEEeCC-----CeEEEEEcCCCce
Confidence 777777744 3689999877643
|
| >1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=1.6 Score=41.02 Aligned_cols=144 Identities=11% Similarity=0.142 Sum_probs=83.8
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEE--Ec----cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWR--IV----KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
+++..+|++|+|=| ..+|+++.....+. .+ +.+|. ... ++... ++++|+|-|. .+|
T Consensus 28 Ai~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~wp~Lp~-~iD-Aa~~~~~~~~iyfFkG~-------~~w 91 (207)
T 1pex_A 28 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPN-RID-AAYEHPSHDLIFIFRGR-------KFW 91 (207)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCS-SCC-EEEEETTTTEEEEEETT-------EEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCcCCCceehhHhccCCCC-Ccc-EEEEeccCCcEEEEccC-------EEE
Confidence 44457999999987 46778776554432 12 23442 222 23333 6899999884 688
Q ss_pred EEECCCCcE---EEccC--CCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----c----cCCC
Q psy10286 622 RYDPKTDEW---TSVKP--MLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----I----ASMN 684 (748)
Q Consensus 622 ~yd~~~~~W---~~~~~--~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p 684 (748)
+|+..+-.- ..+.. +|..-...-++.. ++++|++-| +..|+||..+++-.. + +.+|
T Consensus 92 ~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~~~d~gyPr~i~~~~~Gip 164 (207)
T 1pex_A 92 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIG 164 (207)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC-------CEEEEEeCcCccccCCCCccHHHcCCCCC
Confidence 887432211 22322 2221112333333 489999987 688999987653211 1 1122
Q ss_pred CCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 685 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
..--++...++++|+|-| +..+.||..+++=.
T Consensus 165 --~~iDaAf~~~g~~YfFkg-------~~y~rf~~~~~~v~ 196 (207)
T 1pex_A 165 --DKVDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 196 (207)
T ss_dssp --SCCSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred --CCccEEEEcCCcEEEEEC-------CEEEEEeCCccEEe
Confidence 112334456999999977 46899998776543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.54 Score=49.29 Aligned_cols=189 Identities=17% Similarity=0.102 Sum_probs=94.4
Q ss_pred cceEEEEeCCCCceEE-----ccCCCcccce-eEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccC-CCCCc
Q psy10286 476 LSTVEVFDPLVGRWQM-----AEAMSMLRSR-VGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKR 546 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~-----~~~~~~~r~~-~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r 546 (748)
-..+..||..++.... +..+...... .+++.. ++ .+++.|+.+ ..+..||..+++....-. .....
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~ 177 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD-----NVILVWDVGTGAAVLTLGPDVHPD 177 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT-----SCEEEEETTTTEEEEEECTTTCCS
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC-----CEEEEEECCCCCccEEEecCCCCC
Confidence 3568888887764321 1111111111 222222 33 577777754 358899999886543321 11122
Q ss_pred ceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc-CC-CCCCcceEEEEECCEEEEEccCCCCcccCeEEEE
Q psy10286 547 SAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK-SM-QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERY 623 (748)
Q Consensus 547 ~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 623 (748)
.-.+++.. ++..++.|+.+ ..+..||+.+.+-...- .. ...+....+..-++.+++.|.... ....+..|
T Consensus 178 ~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~--~d~~i~iw 250 (402)
T 2aq5_A 178 TIYSVDWSRDGALICTSCRD-----KRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRM--SERQVALW 250 (402)
T ss_dssp CEEEEEECTTSSCEEEEETT-----SEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTT--CCEEEEEE
T ss_pred ceEEEEECCCCCEEEEEecC-----CcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCC--CCceEEEE
Confidence 22233333 67777777754 47899999887643322 11 111122222333678777772110 02468899
Q ss_pred ECCCCcE-EEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCc--EEEcc
Q psy10286 624 DPKTDEW-TSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIA 681 (748)
Q Consensus 624 d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 681 (748)
|..+..- .............+++.. +..+++.|+.+ ..+.+||..+.+ ...+.
T Consensus 251 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~d-----g~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 251 DTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD-----SSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp ETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTC-----SCEEEEEECSSTTCEEEEE
T ss_pred cCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCC-----CeEEEEEecCCCcceEeec
Confidence 9876431 011111111222223322 34566667543 367888887765 44443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.23 E-value=1.8 Score=42.97 Aligned_cols=222 Identities=13% Similarity=0.063 Sum_probs=116.6
Q ss_pred cEEEEEcCccCCCCCCcceEeecCCCCceeecccc-cccceE-EecccccccCCCccceEEEEeCCCCceEEccCCCccc
Q psy10286 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE-TLSNAV-ISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLR 499 (748)
Q Consensus 422 ~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~-~~~~~~-~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r 499 (748)
+.+|+++... ..+..||+.++ ....... .....+ +..++.++........+..||+.+++...+.......
T Consensus 40 ~~l~~~~~~~------~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 112 (296)
T 3e5z_A 40 SAVIFSDVRQ------NRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGK 112 (296)
T ss_dssp TEEEEEEGGG------TEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTE
T ss_pred CEEEEEeCCC------CEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCC
Confidence 3477776542 25888999887 5544321 112222 2334444444333467999999888877654321111
Q ss_pred ---ceeEEEEE-CCEEEEE----ccCC--------CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEe
Q psy10286 500 ---SRVGVAVM-KNRLYAF----GGYN--------GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCG 562 (748)
Q Consensus 500 ---~~~~~~~~-~~~iyv~----GG~~--------~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~G 562 (748)
.-..++.. +|.+|+. |... .......+++||+. ++...+..-. ....+.+.. ++++++.+
T Consensus 113 ~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~--~~~~gi~~s~dg~~lv~~ 189 (296)
T 3e5z_A 113 KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR--VKPNGLAFLPSGNLLVSD 189 (296)
T ss_dssp ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC--SSEEEEEECTTSCEEEEE
T ss_pred CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC--CCCccEEECCCCCEEEEe
Confidence 11122232 7789986 4311 01123579999988 5544432211 111233333 66666444
Q ss_pred CCCCCCCCceEEEEeCC-CCeE-EE--ccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCC
Q psy10286 563 GYDGVSSLNTVECYEPD-KDQW-RI--VKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPML 637 (748)
Q Consensus 563 G~~~~~~~~~~~~yd~~-~~~W-~~--~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p 637 (748)
.. ...+++||+. +++. .. .-......- .+++. -+|.||+..+ +.+.+||+.......+. .+
T Consensus 190 ~~-----~~~i~~~~~~~~g~~~~~~~~~~~~~~~p-~~i~~d~~G~l~v~~~-------~~v~~~~~~g~~~~~~~-~~ 255 (296)
T 3e5z_A 190 TG-----DNATHRYCLNARGETEYQGVHFTVEPGKT-DGLRVDAGGLIWASAG-------DGVHVLTPDGDELGRVL-TP 255 (296)
T ss_dssp TT-----TTEEEEEEECSSSCEEEEEEEECCSSSCC-CSEEEBTTSCEEEEET-------TEEEEECTTSCEEEEEE-CS
T ss_pred CC-----CCeEEEEEECCCCcCcCCCeEeeCCCCCC-CeEEECCCCCEEEEcC-------CeEEEECCCCCEEEEEE-CC
Confidence 32 2578899876 4444 11 111111111 12333 3778888762 46999999865544443 22
Q ss_pred CCCcceeEEEE---C-CEEEEEeccCCCccccEEEEEeCCCCcE
Q psy10286 638 TKRCRLGVAAL---N-NKIYVCGGYDGAIFLQSVEMYDPITDEW 677 (748)
Q Consensus 638 ~~r~~~~~~~~---~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W 677 (748)
.. ...+.+ + +.||+... +.++.|++++++-
T Consensus 256 ~~---~~~~~f~~~d~~~L~v~t~-------~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 256 QT---TSNLCFGGPEGRTLYMTVS-------TEFWSIETNVRGL 289 (296)
T ss_dssp SC---CCEEEEESTTSCEEEEEET-------TEEEEEECSCCBC
T ss_pred CC---ceeEEEECCCCCEEEEEcC-------CeEEEEEcccccc
Confidence 22 222333 2 35777653 4799999987653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=95.21 E-value=2.7 Score=42.65 Aligned_cols=188 Identities=8% Similarity=0.022 Sum_probs=91.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEc-cCCCCCcce-eEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV-SPMCFKRSA-VGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
++.+++.|+.+ ..+..||..+.+-... ..+...... .+++.. ++..++.||.+ ..+..||..+.+-.
T Consensus 127 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~ 196 (366)
T 3k26_A 127 DPNLLLSVSKD-----HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKRMM 196 (366)
T ss_dssp CTTEEEEEETT-----SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHHHH
T ss_pred CCCEEEEEeCC-----CeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCccc
Confidence 55677777754 3688899988764433 211212222 223332 56677777754 36788888765311
Q ss_pred Ec-c-------------------------CCC-CCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcE-------
Q psy10286 585 IV-K-------------------------SMQ-KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW------- 630 (748)
Q Consensus 585 ~~-~-------------------------~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W------- 630 (748)
.. . ... ....-.++... +.+++.|+.+ ..+..||..+..=
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCE-----NAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSS-----SEEEEEEESSTTCCGGGCCT
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc-CCEEEEEecC-----CEEEEEeCCCcccccccccc
Confidence 00 0 000 11111222233 5566666653 3577787655321
Q ss_pred -----EEccCCC--CCCcceeEEEEC--CEEEEEeccCCCccccEEEEEeCCCCcEE--EccCCCCC--CcceEEEEE--
Q psy10286 631 -----TSVKPML--TKRCRLGVAALN--NKIYVCGGYDGAIFLQSVEMYDPITDEWK--MIASMNVM--RSRVALVAN-- 695 (748)
Q Consensus 631 -----~~~~~~p--~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~--~~~~~p~~--r~~~~~~~~-- 695 (748)
..+..+. ...........+ +.+++.|+.+ ..+.+||..+.+-. .+..+... ......+..
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 345 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV-----GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSR 345 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT-----SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECT
T ss_pred CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC-----CcEEEEECCCCCCccccceEEcccccCCceEEEEeCC
Confidence 1111111 111111122234 7778888754 36888998775311 11112211 112222222
Q ss_pred CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 696 MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 696 ~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
++++++.||.++ .+.+||+.+
T Consensus 346 ~~~~l~s~~~dg-----~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDA-----SIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTS-----EEEEEEC--
T ss_pred CCCeEEEEeCCC-----EEEEEEecC
Confidence 677888887543 688888753
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.4 Score=49.30 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=95.0
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC--C-CCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP--M-CFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~--~-~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
+...+..++.|+.+ ..+..||..+++-..... + .....-.+++.. +++.++.|+.+ ..+..||..+
T Consensus 89 ~~s~d~~l~~~s~d-----g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d-----~~i~iwd~~~ 158 (344)
T 4gqb_B 89 TWVGERGILVASDS-----GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD-----ICIKVWDLAQ 158 (344)
T ss_dssp EEETTTEEEEEETT-----SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTT
T ss_pred EEeCCCeEEEEECC-----CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCC
Confidence 33344445566643 367888887764211110 0 111111223322 67777888765 3688899888
Q ss_pred CeEEEccCCCCCCcc-eEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE---CCEEEE
Q psy10286 581 DQWRIVKSMQKHRSA-GGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL---NNKIYV 654 (748)
Q Consensus 581 ~~W~~~~~~~~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v 654 (748)
++-... +...... .+++.. +..+++.|+.++ .+..||..+.+-...-..........++.+ ++++++
T Consensus 159 ~~~~~~--~~~h~~~V~~~~~~~~~~~~l~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 159 QVVLSS--YRAHAAQVTCVAASPHKDSVFLSCSEDN-----RILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp TEEEEE--ECCCSSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred CcEEEE--EcCcCCceEEEEecCCCCCceeeecccc-----ccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence 753222 2211111 122222 335777787654 588899887654332111111112222222 466888
Q ss_pred EeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--C-CEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 655 CGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--M-GKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.|+.+ ..|.+||..+.+ .+..+.........+.+ + .++++.|+.++ .|.+||..+++-
T Consensus 232 sg~~d-----g~v~~wd~~~~~--~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~-----~i~vwd~~~~~~ 292 (344)
T 4gqb_B 232 FGDEN-----GTVSLVDTKSTS--CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC-----SLAVLDSSLSEL 292 (344)
T ss_dssp EEETT-----SEEEEEESCC----CCEEEECCSSCEEEEEECSSSSCCEEEEETTS-----CEEEECTTCCEE
T ss_pred EeccC-----CcEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC-----eEEEEECCCCcE
Confidence 88764 368889987643 22222211222222333 3 35667777543 578888777653
|
| >1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0081 Score=49.79 Aligned_cols=89 Identities=12% Similarity=0.229 Sum_probs=60.3
Q ss_pred EEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCCC
Q psy10286 77 VTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGID 156 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 156 (748)
|+|.|+|+.|...+..|..... .||... +.. . .......++-+ +=+
T Consensus 2 V~LNVGG~~f~t~~~TL~~~p~---s~L~~~--~~~--~--------------------------~~~~~~~~~Fi-DRd 47 (105)
T 1nn7_A 2 IVLNVSGTRFQTWQDTLERYPD---TLLGSS--ERD--F--------------------------FYHPETQQYFF-DRD 47 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCS---SSTTSG--GGG--G--------------------------GEEGGGTEEEE-CSC
T ss_pred EEEEECCEEEEEeHHHHhcCCC---cccccc--CCc--c--------------------------cccCCCCcEEE-eCC
Confidence 7899999999999988864321 233320 000 0 00112233333 459
Q ss_pred HHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhHH-HHHH
Q psy10286 157 AVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKVA-DACA 199 (748)
Q Consensus 157 ~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l~-~~c~ 199 (748)
+..|+.+|+|+-+|++.++.+ .+..+++-|++|+|+.+. +.|+
T Consensus 48 p~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 48 PDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCC 92 (105)
T ss_dssp TTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHH
T ss_pred cHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999987655 478899999999999873 4443
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.07 E-value=3 Score=42.16 Aligned_cols=222 Identities=13% Similarity=-0.032 Sum_probs=110.3
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCE-EEEEccC-----------------CCC----CCCCeEEEEECCC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNR-LYAFGGY-----------------NGS----ERLSTVEEFDPVR 533 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~-----------------~~~----~~~~~v~~yd~~t 533 (748)
..+|.+|..+++...+...+. ..+.+.. +++ |++.... ++. .....++.+|+.+
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~---~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN---IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE---EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred ceEEEEECCCCceEEEEcCCC---ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 468999998887776654332 2222222 554 4444321 000 1135799999999
Q ss_pred CeE-EEccCCCCCcceeEEEEE-CCEEEEEeCCCCCC---C-CceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEE
Q psy10286 534 RVW-NKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVS---S-LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYA 607 (748)
Q Consensus 534 ~~W-~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~---~-~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv 607 (748)
++. ..+.. + .....+.. +| +++.+..++.. . ...++.+| ++++..+..- .......-+|+.++
T Consensus 162 ~~~~~~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~ 230 (347)
T 2gop_A 162 EEVIEEFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERIL 230 (347)
T ss_dssp TEEEEEEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEE
T ss_pred CeEEeeecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEE
Confidence 887 55554 3 22233333 55 55555443221 1 45788888 7777666432 11222244554343
Q ss_pred EccCCC---CcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC
Q psy10286 608 LGGHDG---LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN 684 (748)
Q Consensus 608 ~GG~~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 684 (748)
+++... ......++.+| +.++..+..-.. ........+.+.+|+.++.++ ...+| ++ +.+...+...
T Consensus 231 ~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~-~~~~~~~~~sdg~~~~~~~~~---~~~l~-~~--~g~~~~~~~~- 300 (347)
T 2gop_A 231 LYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD-RGVGQAKIKDGKVYFTLFEEG---SVNLY-IW--DGEIKPIAKG- 300 (347)
T ss_dssp EEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC-SEEEEEEEETTEEEEEEEETT---EEEEE-EE--SSSEEEEECS-
T ss_pred EEEccccCCccccceEEEEC--CCceEeccccCC-cccCCccEEcCcEEEEEecCC---cEEEE-Ec--CCceEEEecC-
Confidence 433221 12345799999 667776643211 111111223234777766544 34677 77 3444444221
Q ss_pred CCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 685 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
.....++.... .+++.++..+ ....+|.+| ++.+.+..
T Consensus 301 -~~~v~~~~~s~-~~~~~~~~~~--~~~~l~~~~---g~~~~lt~ 338 (347)
T 2gop_A 301 -RHWIMGFDVDE-IVVYLKETAT--RLRELFTWD---GEEKQLTD 338 (347)
T ss_dssp -SSEEEEEEESS-SEEEEEECSS--SCCEEEEES---SSEEECCC
T ss_pred -CCeEEeeeeeC-cEEEEEcCCC--ChHHheEeC---CcEEEecc
Confidence 22222222234 5555554332 223788887 45555543
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.05 E-value=1.7 Score=43.09 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=99.3
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCe-EEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRV-WNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||..++.-...-... ...-.+++.. ++..++.|+.++ .+..||..... ...+..+............
T Consensus 39 g~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg-----~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 112 (313)
T 3odt_A 39 GTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDT-----MINGVPLFATSGEDPLYTLIGHQGNVCSLSF 112 (313)
T ss_dssp SEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTS-----CEEEEETTCCTTSCC-CEECCCSSCEEEEEE
T ss_pred CcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCC-----eEEEEEeeecCCCCcccchhhcccCEEEEEe
Confidence 46778887665433221111 1111223333 666777777543 45666654421 1111111111222233333
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-E-CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-F-DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++..++.|+.+ ..+..||.....+.... .. ..-.++.. - ++..++.|+.++ .+..||.....- .
T Consensus 113 ~~~~l~~~~~d-----~~i~~~d~~~~~~~~~~-~~--~~v~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~-~ 178 (313)
T 3odt_A 113 QDGVVISGSWD-----KTAKVWKEGSLVYNLQA-HN--ASVWDAKVVSFSENKFLTASADK-----TIKLWQNDKVIK-T 178 (313)
T ss_dssp ETTEEEEEETT-----SEEEEEETTEEEEEEEC-CS--SCEEEEEEEETTTTEEEEEETTS-----CEEEEETTEEEE-E
T ss_pred cCCEEEEEeCC-----CCEEEEcCCcEEEeccc-CC--CceeEEEEccCCCCEEEEEECCC-----CEEEEecCceEE-E
Confidence 56666777754 46777883322222221 11 11112222 2 566677777643 577888332221 1
Q ss_pred ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce-EEEEE-CCEEEEEeCCCCCCC
Q psy10286 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV-ALVAN-MGKLWAIGGYDGVSN 710 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~~~~ 710 (748)
............+..-++. ++.|+.+ ..+.+||..+.+-... +....... +++.. +++ ++.||.+
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~d-----g~i~i~d~~~~~~~~~--~~~~~~~i~~~~~~~~~~-l~~~~~d---- 245 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSND-----GLIKLVDMHTGDVLRT--YEGHESFVYCIKLLPNGD-IVSCGED---- 245 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETT-----SEEEEEETTTCCEEEE--EECCSSCEEEEEECTTSC-EEEEETT----
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCC-----CeEEEEECCchhhhhh--hhcCCceEEEEEEecCCC-EEEEecC----
Confidence 2111111222222233667 6677654 4788999877643221 11111222 22232 444 5566643
Q ss_pred CCeEEEEeCCCCceE
Q psy10286 711 LPTVEVYDPSTDSWA 725 (748)
Q Consensus 711 ~~~v~~yd~~~~~W~ 725 (748)
..+.+||..+++..
T Consensus 246 -g~v~iwd~~~~~~~ 259 (313)
T 3odt_A 246 -RTVRIWSKENGSLK 259 (313)
T ss_dssp -SEEEEECTTTCCEE
T ss_pred -CEEEEEECCCCcee
Confidence 36888988877644
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.16 Score=62.50 Aligned_cols=248 Identities=10% Similarity=0.120 Sum_probs=119.7
Q ss_pred ceEeecCCCCceeecc-c--ccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEc
Q psy10286 439 TVEVFDPLVGRWQMAE-E--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFG 515 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~-~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~G 515 (748)
.+..||..+++....- . ..+....+..++.....+..-..+..||..+++........ ..-.+++...+..++.|
T Consensus 984 ~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~ 1061 (1249)
T 3sfz_A 984 AIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQ--ETVKDFRLLQDSRLLSW 1061 (1249)
T ss_dssp CCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCS--SCEEEEEECSSSEEEEE
T ss_pred CEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCC--CcEEEEEEcCCCcEEEE
Confidence 4677777665543221 1 11222233333333333333457889999888776543222 12223333334445566
Q ss_pred cCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcc
Q psy10286 516 GYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSA 595 (748)
Q Consensus 516 G~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~ 595 (748)
+.+ ..+..||..+++-...-.-....-...+..-+++.++.|+.++ .+..||..+.. .+..+......
T Consensus 1062 ~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd~~~~~--~~~~l~~h~~~ 1129 (1249)
T 3sfz_A 1062 SFD-----GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK-----TAKIWSFDLLS--PLHELKGHNGC 1129 (1249)
T ss_dssp ESS-----SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS-----CCCEECSSSSS--CSBCCCCCSSC
T ss_pred ECC-----CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCcc--eeeeeccCCCc
Confidence 643 3688899887653221111111111222223677777777653 46677776543 12222221111
Q ss_pred eEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEcc-CC------CCCCcceeEEEE--CCEEEEEeccCCCccc
Q psy10286 596 GGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK-PM------LTKRCRLGVAAL--NNKIYVCGGYDGAIFL 664 (748)
Q Consensus 596 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~------p~~r~~~~~~~~--~~~i~v~GG~~~~~~~ 664 (748)
-.++.+ ++.+.+.|+.++ .+..||..+.+....- +. .........+.+ +++.++.||
T Consensus 1130 v~~~~~s~dg~~lat~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------- 1197 (1249)
T 3sfz_A 1130 VRCSAFSLDGILLATGDDNG-----EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------- 1197 (1249)
T ss_dssp EEEEEECSSSSEEEEEETTS-----CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-------
T ss_pred EEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-------
Confidence 222222 677888887654 4677887765432211 10 111111222223 566666665
Q ss_pred cEEEEEeCCCCcEEEccCCCCCC--cceEEEEECCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 665 QSVEMYDPITDEWKMIASMNVMR--SRVALVANMGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 665 ~~v~~yd~~~~~W~~~~~~p~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
..+.+||..+.+... .+.... .......-+++.++.|+.++ .+++|+.
T Consensus 1198 g~v~vwd~~~g~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~dg-----~v~vw~l 1247 (1249)
T 3sfz_A 1198 GYLKWWNVATGDSSQ--TFYTNGTNLKKIHVSPDFRTYVTVDNLG-----ILYILQV 1247 (1249)
T ss_dssp SSEEEBCSSSCBCCC--CCCCSSCCCCCCEECSSSCCEEEECTTC-----CEEEECC
T ss_pred CeEEEEECCCCceee--eeeccCCcccEEEECCCCCEEEEecCCc-----EEEEEee
Confidence 368889987764322 222111 11222233677777777543 4777765
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.03 E-value=3.3 Score=47.55 Aligned_cols=182 Identities=14% Similarity=0.143 Sum_probs=99.9
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK 587 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 587 (748)
++.|||-.. +.+.+||+.++++...... ....-.+.+..+|.||+... +.+++||+.+++++...
T Consensus 73 ~g~lWigT~-------~Gl~~yd~~~~~f~~~~~~-~~~~i~~i~~~~g~lWigt~-------~Gl~~~~~~~~~~~~~~ 137 (758)
T 3ott_A 73 NTYLYMGTD-------NGILVYNYRADRYEQPETD-FPTDVRTMALQGDTLWLGAL-------NGLYTYQLQSRKLTSFD 137 (758)
T ss_dssp TTEEEEEET-------TEEEEEETTTTEECCCSCC-CCSCEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEC
T ss_pred CCcEEEEeC-------CCeEEEeCCCCEEECcccC-CCceEEEEEecCCcEEEEcC-------CcceeEeCCCCeEEEec
Confidence 678887432 3578999999987652111 11111233345888887432 36899999999887762
Q ss_pred ----CCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCC----CCcceeEEEE--CCEEEEEe
Q psy10286 588 ----SMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLT----KRCRLGVAAL--NNKIYVCG 656 (748)
Q Consensus 588 ----~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~----~r~~~~~~~~--~~~i~v~G 656 (748)
.++... -.+++.. ++.|++... ..+.+||+.+++++....... ...-.++..- ++.|||-.
T Consensus 138 ~~~~~l~~~~-i~~i~~d~~g~lWigt~-------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt 209 (758)
T 3ott_A 138 TRRNGLPNNT-IYSIIRTKDNQIYVGTY-------NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT 209 (758)
T ss_dssp HHHHCCSCSC-EEEEEECTTCCEEEEET-------TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE
T ss_pred cCCCCcCCCe-EEEEEEcCCCCEEEEeC-------CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE
Confidence 122211 1222222 678887321 358899999998876532111 0111223332 24577632
Q ss_pred ccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 657 GYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
. ..++.||+.++++.....++... -.+++.. +|.|+|-.. ..+.+||+.++.++.+
T Consensus 210 -~------~Gl~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWigT~-------~Gl~~~~~~~~~~~~~ 266 (758)
T 3ott_A 210 -E------GYLFQYFPSTGQIKQTEAFHNNS-IKSLALDGNGDLLAGTD-------NGLYVYHNDTTPLQHI 266 (758)
T ss_dssp -E------EEEEEEETTTTEEEEEEEEEEEE-EEEEEECTTCCEEEEET-------TEEEEECCTTSCCEEE
T ss_pred -C------CCCeEEcCCCCeEEeccCCCCCe-EEEEEEcCCCCEEEEeC-------CceeEEecCCCcEEEE
Confidence 1 25889999999887664332111 1122222 466766421 2366677766665543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=4.1 Score=45.13 Aligned_cols=116 Identities=17% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC------cceeEEEEECCEEEEEeCCCCCCCCceEEE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK------RSAVGAAALNDKLYVCGGYDGVSSLNTVEC 575 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 575 (748)
-++.++.||+.++. ..++.+|..|.+ |+.-...+.. ....+.++.+++||+... -..+..
T Consensus 64 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~A 131 (582)
T 1flg_A 64 AIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVA 131 (582)
T ss_dssp CEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEE
T ss_pred cEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEE
Confidence 35679999997653 248999988764 8875443221 011234567899987532 247899
Q ss_pred EeCCCCe--EEEccCCCCCC--cceEEEEECC------EEEEEccCC-CCcccCeEEEEECCCCc--EEE
Q psy10286 576 YEPDKDQ--WRIVKSMQKHR--SAGGVIAFDS------YVYALGGHD-GLSIFDSVERYDPKTDE--WTS 632 (748)
Q Consensus 576 yd~~~~~--W~~~~~~~~~r--~~~~~~~~~~------~iyv~GG~~-~~~~~~~~~~yd~~~~~--W~~ 632 (748)
+|..+.+ |+.-..-+... ...+-++.++ .+|+ |... .......++.||+.+.+ |+.
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 9998775 87653221111 1122334455 6655 3321 11124579999998764 865
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=2.4 Score=44.14 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=95.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+++.++.|+.+ ..+..||..+.+-...-.- ....-.+++.. ++..++.|+.+ ..+..||..+++....
T Consensus 134 dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s~d-----~~v~iwd~~~~~~~~~ 202 (393)
T 1erj_A 134 DGKFLATGAED-----RLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSLT 202 (393)
T ss_dssp TSSEEEEEETT-----SCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEecCC-----CcEEEEECCCCeeEEE
Confidence 66777778754 3688899988764332111 11112233332 56666677654 4688899988775433
Q ss_pred cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEc-cCCC----CCCcceeEEEE--CCEEEEEec
Q psy10286 587 KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-KPML----TKRCRLGVAAL--NNKIYVCGG 657 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~p----~~r~~~~~~~~--~~~i~v~GG 657 (748)
-.... .-.+++.. ++.+++.|+.++ .+..||..+..-... .... ........+.+ +++.++.|+
T Consensus 203 ~~~~~--~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 275 (393)
T 1erj_A 203 LSIED--GVTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275 (393)
T ss_dssp EECSS--CEEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEcCC--CcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe
Confidence 22211 11222222 677888888754 588899887654322 1110 11111222233 567777887
Q ss_pred cCCCccccEEEEEeCCCCcEEEccC----------CCCCCcc-eEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 658 YDGAIFLQSVEMYDPITDEWKMIAS----------MNVMRSR-VALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~----------~p~~r~~-~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+ ..+.+||..+..-..... +...... .+++. -+++.++.||.+ ..+.+||..++.
T Consensus 276 ~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D-----~~v~iwd~~~~~ 343 (393)
T 1erj_A 276 LD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGN 343 (393)
T ss_dssp TT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCC
T ss_pred CC-----CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCe
Confidence 65 367788876532211000 0000011 11222 256667777744 368888887764
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.94 E-value=4.2 Score=42.32 Aligned_cols=212 Identities=11% Similarity=0.090 Sum_probs=120.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC--CCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP--MCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~--~~~~r~~~~~~ 552 (748)
+.+..+++.......+... ...-.+++.. ++.||+.-- ....++++++.....+.+.. +..+ .+.+
T Consensus 96 ~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~gla 165 (386)
T 3v65_B 96 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GGLA 165 (386)
T ss_dssp SCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCCEEEEECSSCSCC---CCEE
T ss_pred ccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEeC-----CCCcEEEEecCCCCcEEEEeCCCCCc---cEEE
Confidence 4678888877766555331 2223445544 678998743 23579999998876655422 2222 2333
Q ss_pred E--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECC
Q psy10286 553 A--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 553 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
+ .++.||+.-.. .+.++++++....-..+. .+..| .++++. ++.||+.-... ...++++++.
T Consensus 166 vd~~~g~lY~~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~~----~~~I~r~~~d 233 (386)
T 3v65_B 166 VDWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMD 233 (386)
T ss_dssp EETTTTEEEEEETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred EEeCCCeEEEEcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccCC----CCEEEEEeCC
Confidence 3 37899988542 247888887755433332 22222 234443 68999875321 3579999987
Q ss_pred CCcEEEccCCCCCCcceeEEE--ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeC
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAA--LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
...-+.+..... ..-.+++. .+++||+.-.. .+.|+.+|.....-..+..... ..-.++++.++.||+.--
T Consensus 234 G~~~~~~~~~~~-~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~-~~P~giav~~~~ly~td~ 306 (386)
T 3v65_B 234 GSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQGL-PHPFAITVFEDSLYWTDW 306 (386)
T ss_dssp SCSCEEEECSSC-SCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSSC-SSEEEEEEETTEEEEEET
T ss_pred CCCcEEEEECCC-CCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECCC-CCceEEEEECCEEEEeeC
Confidence 654333321111 11234444 37899998643 3689999987543232221111 122456668899999853
Q ss_pred CCCCCCCCeEEEEeCCCC
Q psy10286 705 YDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~ 722 (748)
....|.++|..++
T Consensus 307 -----~~~~V~~~~~~~G 319 (386)
T 3v65_B 307 -----HTKSINSANKFTG 319 (386)
T ss_dssp -----TTTEEEEEETTTC
T ss_pred -----CCCeEEEEECCCC
Confidence 1246777775443
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.17 Score=62.31 Aligned_cols=218 Identities=8% Similarity=0.060 Sum_probs=108.3
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
....+..||..+++......-....- .+++. -++...+.||.+ ..+..||..+++....... ...-.+++.
T Consensus 981 ~~g~i~i~d~~~~~~~~~~~~h~~~v-~~l~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~--~~~v~~~~~ 1052 (1249)
T 3sfz_A 981 EDGAIKIIELPNNRVFSSGVGHKKAV-RHIQFTADGKTLISSSED-----SVIQVWNWQTGDYVFLQAH--QETVKDFRL 1052 (1249)
T ss_dssp TTSCCEEEETTTTSCEEECCCCSSCC-CCEEECSSSSCEEEECSS-----SBEEEEETTTTEEECCBCC--SSCEEEEEE
T ss_pred CCCCEEEEEcCCCceeeecccCCCce-EEEEECCCCCEEEEEcCC-----CEEEEEECCCCceEEEecC--CCcEEEEEE
Confidence 33567788887765433211111111 11222 256667777754 4688999998876643322 222223333
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
..+..++.|+.+ ..+..||..+++-...-..........+..-++..++.|+.++ .+..||..+.+ .+
T Consensus 1053 ~~~~~l~~~~~d-----g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd~~~~~--~~ 1120 (1249)
T 3sfz_A 1053 LQDSRLLSWSFD-----GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADK-----TAKIWSFDLLS--PL 1120 (1249)
T ss_dssp CSSSEEEEEESS-----SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS-----CCCEECSSSSS--CS
T ss_pred cCCCcEEEEECC-----CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC-----cEEEEECCCcc--ee
Confidence 333334555544 4688889877653221111111112222233666777777644 46677766543 22
Q ss_pred cCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEc-cCC------CCCCcc-eEEEE-ECCEEEEE
Q psy10286 634 KPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI-ASM------NVMRSR-VALVA-NMGKLWAI 702 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~------p~~r~~-~~~~~-~~~~l~v~ 702 (748)
..+........++.+ ++++++.|+.++ .+.+||..+.+.... .+. ...... .+++. -+++.++.
T Consensus 1121 ~~l~~h~~~v~~~~~s~dg~~lat~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s 1195 (1249)
T 3sfz_A 1121 HELKGHNGCVRCSAFSLDGILLATGDDNG-----EIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVS 1195 (1249)
T ss_dssp BCCCCCSSCEEEEEECSSSSEEEEEETTS-----CCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEE
T ss_pred eeeccCCCcEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEE
Confidence 222222222233333 677888887654 467788776543221 110 011111 12222 25666666
Q ss_pred eCCCCCCCCCeEEEEeCCCCce
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (748)
|| ..+.+||..+++.
T Consensus 1196 ~~-------g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1196 AG-------GYLKWWNVATGDS 1210 (1249)
T ss_dssp ES-------SSEEEBCSSSCBC
T ss_pred CC-------CeEEEEECCCCce
Confidence 65 2688888877653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=94.90 E-value=1.7 Score=43.72 Aligned_cols=237 Identities=15% Similarity=0.243 Sum_probs=116.0
Q ss_pred ceEeecCCCCc--eeecccccccce-EEecccccccCCCccceEEEEeCCCC-ceEEccCCCcccceeEEEEECCEEEEE
Q psy10286 439 TVEVFDPLVGR--WQMAEEETLSNA-VISTKSCLTKAGDSLSTVEVFDPLVG-RWQMAEAMSMLRSRVGVAVMKNRLYAF 514 (748)
Q Consensus 439 ~~~~y~~~~~~--W~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~~~~iyv~ 514 (748)
.+.+|| .+++ |....+.....+ ....++.++.... . ++.||+..+ .|..... ... ....++.++.||+.
T Consensus 41 ~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~--~-l~~~d~~g~~~~~~~~~--~~~-~~~~~~~~~~l~v~ 113 (330)
T 3hxj_A 41 NLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSD--K-VYAINPDGTEKWRFDTK--KAI-VSDFTIFEDILYVT 113 (330)
T ss_dssp TTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSC--E-EEEECCCGGGGGGSCC--------CCEEEETTEEEEE
T ss_pred EEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecC--c-EEEECCCCcEEEEEECC--CCc-ccCceEECCEEEEE
Confidence 467888 5554 443322222222 2223455555432 2 899997432 2532211 111 11223338888874
Q ss_pred ccCCCCCCCCeEEEEECC-CCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCC
Q psy10286 515 GGYNGSERLSTVEEFDPV-RRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQK 591 (748)
Q Consensus 515 GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~ 591 (748)
.. ...+++||+. ...|....+.+. ..+.+.. ++.+|+. .. -..++.||+... .|....+ .
T Consensus 114 t~------~~~l~~~d~~g~~~~~~~~~~~~---~~~~~~~~~g~l~vg-t~-----~~~l~~~d~~g~~~~~~~~~--~ 176 (330)
T 3hxj_A 114 SM------DGHLYAINTDGTEKWRFKTKKAI---YATPIVSEDGTIYVG-SN-----DNYLYAINPDGTEKWRFKTN--D 176 (330)
T ss_dssp CT------TSEEEEECTTSCEEEEEECSSCC---CSCCEECTTSCEEEE-CT-----TSEEEEECTTSCEEEEEECS--S
T ss_pred ec------CCEEEEEcCCCCEEEEEcCCCce---eeeeEEcCCCEEEEE-cC-----CCEEEEECCCCCEeEEEecC--C
Confidence 32 1468899987 345765433221 1222334 6777763 32 147899999832 3665432 2
Q ss_pred CCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCC-CcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEE
Q psy10286 592 HRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKT-DEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 592 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~ 668 (748)
... .+.+. .++.||+.. ..+++||... ..|+..... ....+.+.. ++.||+... ...++
T Consensus 177 ~~~-~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~~---~~~~~~~~~~~g~l~v~t~------~~gl~ 238 (330)
T 3hxj_A 177 AIT-SAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAGY---WTVTRPAISEDGTIYVTSL------DGHLY 238 (330)
T ss_dssp CCC-SCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCSS---CCCSCCEECTTSCEEEEET------TTEEE
T ss_pred Cce-eeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccCC---cceeceEECCCCeEEEEcC------CCeEE
Confidence 222 22333 467788754 3588899442 346654321 112223333 457777542 14688
Q ss_pred EEeCCCCc-EEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCC-ceEe
Q psy10286 669 MYDPITDE-WKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTD-SWAF 726 (748)
Q Consensus 669 ~yd~~~~~-W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~-~W~~ 726 (748)
+||+.... |..-.. ..... ..+.. ++.||+... + ..+++||+... .|+.
T Consensus 239 ~~~~~g~~~~~~~~~--~~~~~-~~~~~~~g~l~v~t~-~-----ggl~~~d~~g~~~~~~ 290 (330)
T 3hxj_A 239 AINPDGTEKWRFKTG--KRIES-SPVIGNTDTIYFGSY-D-----GHLYAINPDGTEKWNF 290 (330)
T ss_dssp EECTTSCEEEEEECS--SCCCS-CCEECTTSCEEEECT-T-----CEEEEECTTSCEEEEE
T ss_pred EECCCCCEeEEeeCC--CCccc-cceEcCCCeEEEecC-C-----CCEEEECCCCcEEEEE
Confidence 88875544 543221 11111 12233 677776532 1 25788887433 3543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=94.89 E-value=3 Score=42.21 Aligned_cols=202 Identities=10% Similarity=0.029 Sum_probs=102.1
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC----CcceeEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF----KRSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~----~r~~~~~ 551 (748)
..+++||+.+++..... .+. .-.+++. -++.+|+... ..+++||+.+++...+...+. .+....+
T Consensus 71 ~~i~~~d~~~~~~~~~~-~~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~ 140 (326)
T 2ghs_A 71 RELHELHLASGRKTVHA-LPF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGR 140 (326)
T ss_dssp TEEEEEETTTTEEEEEE-CSS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEE
T ss_pred CEEEEEECCCCcEEEEE-CCC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEE
Confidence 57899999887655442 221 1222332 3788877542 359999999998876654322 1222222
Q ss_pred EEECCEEEEEeC-CCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECC--
Q psy10286 552 AALNDKLYVCGG-YDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPK-- 626 (748)
Q Consensus 552 ~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~-- 626 (748)
+.-+|++|+... .........+++|| +.+...+..- .....+.+.. ++ .+|+.... ...+++||..
T Consensus 141 ~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~~~~~~i~~s~dg~~lyv~~~~-----~~~I~~~d~~~~ 211 (326)
T 2ghs_A 141 MHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTK-----VNRLMRVPLDAR 211 (326)
T ss_dssp ECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--ESSEEEEEECTTSCEEEEEETT-----TCEEEEEEBCTT
T ss_pred ECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--CcccCCeEEcCCCCEEEEEECC-----CCEEEEEEcccc
Confidence 222678887432 11112346789998 4665544210 0111233332 44 67776543 2479999875
Q ss_pred CC-c------EEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE---
Q psy10286 627 TD-E------WTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--- 695 (748)
Q Consensus 627 ~~-~------W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--- 695 (748)
+. . +...... ...-.+++.- ++.+|+.... .+.+.+||+....-..+. +|.. .-.+++..
T Consensus 212 ~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~-----~~~v~~~d~~g~~~~~i~-~~~~-~~~~~af~g~d 282 (326)
T 2ghs_A 212 TGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWG-----EGAVDRYDTDGNHIARYE-VPGK-QTTCPAFIGPD 282 (326)
T ss_dssp TCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEET-----TTEEEEECTTCCEEEEEE-CSCS-BEEEEEEESTT
T ss_pred cCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeC-----CCEEEEECCCCCEEEEEE-CCCC-CcEEEEEecCC
Confidence 43 2 2222110 1111223322 5678876521 147999999554333332 2322 12223332
Q ss_pred CCEEEEEeCCC
Q psy10286 696 MGKLWAIGGYD 706 (748)
Q Consensus 696 ~~~l~v~GG~~ 706 (748)
++.|||.....
T Consensus 283 ~~~L~vt~~~~ 293 (326)
T 2ghs_A 283 ASRLLVTSARE 293 (326)
T ss_dssp SCEEEEEEBCT
T ss_pred CCEEEEEecCC
Confidence 25788875443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=94.84 E-value=2.7 Score=44.26 Aligned_cols=227 Identities=13% Similarity=0.131 Sum_probs=120.2
Q ss_pred cccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCe-EEEccC
Q psy10286 465 TKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRV-WNKVSP 541 (748)
Q Consensus 465 ~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~~~~~ 541 (748)
..+.++........+.++|+.++.-..+.... ...+ ++.. ++.+|+...... ..++++|+.++. ...+..
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~~~~~~g~ 212 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGT----HTVYVYMKASGWAPTRIGQ 212 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTT----CEEEEEEGGGTTCEEEEEE
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCC----ceEEEEEcCCCceeEEeee
Confidence 34445554444467899999887655543221 1112 2322 456777654221 279999987543 223311
Q ss_pred CC--CCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC---CCCCCcc-e-EEEEE--CCEEEEEcc
Q psy10286 542 MC--FKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS---MQKHRSA-G-GVIAF--DSYVYALGG 610 (748)
Q Consensus 542 ~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~-~-~~~~~--~~~iyv~GG 610 (748)
.+ ....-+++++. ++.||+..+ ...+++||+.+........ ....... . .++.. ++.+|+...
T Consensus 213 ~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 213 LGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp CCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred ccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 11 11222334443 689999432 2479999998887655421 1111222 1 45544 589999864
Q ss_pred CCCCcccCeEEEEECCCCcEEEccCCCC----------C--CcceeEEEE-CCEEEEEec-cCCCccccEEEEEeCCCCc
Q psy10286 611 HDGLSIFDSVERYDPKTDEWTSVKPMLT----------K--RCRLGVAAL-NNKIYVCGG-YDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 611 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~----------~--r~~~~~~~~-~~~i~v~GG-~~~~~~~~~v~~yd~~~~~ 676 (748)
. .+.+++||+....-........ . ..-.+++.- ++.||+... . .+.|.++|+.+..
T Consensus 287 ~-----~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 287 N-----LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----GYCLRKLDILDGY 356 (409)
T ss_dssp T-----TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----TCEEEEEETTTTE
T ss_pred C-----CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----CCEEEEEECCCCE
Confidence 4 3579999987652222211100 0 111233333 567998864 3 3579999976776
Q ss_pred EEEccCCC-----------CCCc--ceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 677 WKMIASMN-----------VMRS--RVALVAN-MGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 677 W~~~~~~p-----------~~r~--~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
...+...+ ..+. -+++++. ++.|||....+ ..|..+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n-----~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWG-----KAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTT-----CEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCC-----CeEEEEEe
Confidence 66553211 0111 2334433 48899886422 35666654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.79 E-value=1.1 Score=45.48 Aligned_cols=216 Identities=9% Similarity=-0.018 Sum_probs=108.2
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
...+|.+|..+++-..+. ........ +|+..++....+......++.+|..+++...+...+. ....+..
T Consensus 42 ~~~l~~~d~~~~~~~~l~------~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~ws 112 (347)
T 2gop_A 42 ENTIVIENLKNNARRFIE------NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWN 112 (347)
T ss_dssp EEEEEEEETTTCCEEEEE------SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEEC
T ss_pred cceEEEEeCCCCceEEcc------cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeEC
Confidence 356888888887766551 11122222 4543333332221223469999999888776654332 2222222
Q ss_pred -CCEEEEEeCCC------------------CC----CCCceEEEEeCCCCeE-EEccCCCCCCcceEEEEECCEEEEEcc
Q psy10286 555 -NDKLYVCGGYD------------------GV----SSLNTVECYEPDKDQW-RIVKSMQKHRSAGGVIAFDSYVYALGG 610 (748)
Q Consensus 555 -~~~iyv~GG~~------------------~~----~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG 610 (748)
+|+.++++... +. .....++.+|+.+++. ..+.. + .....+...+.+++.+.
T Consensus 113 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg~~~~~~ 188 (347)
T 2gop_A 113 EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDKIVVNVP 188 (347)
T ss_dssp TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTEEEEEEE
T ss_pred CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCeEEEEEe
Confidence 55433343211 00 1135789999998887 66554 2 22333333333555554
Q ss_pred CCCCc---c-cCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCC---CccccEEEEEeCCCCcEEEccCC
Q psy10286 611 HDGLS---I-FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDG---AIFLQSVEMYDPITDEWKMIASM 683 (748)
Q Consensus 611 ~~~~~---~-~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~ 683 (748)
.++.. . ...++.+| +.++..+..- .......-+|+.+++++... ......++.+| +.++..+..-
T Consensus 189 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~ 260 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWE--DGKEEKMFEK----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDE 260 (347)
T ss_dssp CCCSSCCSSCCEEEEEEE--TTEEEEEEEE----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTT
T ss_pred cccccccccccccEEEeC--CCceEEeccC----cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEecccc
Confidence 43211 1 45789999 6777766432 12222244665444443322 12346899999 6667766432
Q ss_pred CCCCcceE-EEEECCEEEEEeCCCCCCCCCeEEEEe
Q psy10286 684 NVMRSRVA-LVANMGKLWAIGGYDGVSNLPTVEVYD 718 (748)
Q Consensus 684 p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~v~~yd 718 (748)
.. ..... .+..++ +|+.++.++ ...++ ++
T Consensus 261 ~~-~~~~~~~~~sdg-~~~~~~~~~---~~~l~-~~ 290 (347)
T 2gop_A 261 VD-RGVGQAKIKDGK-VYFTLFEEG---SVNLY-IW 290 (347)
T ss_dssp CC-SEEEEEEEETTE-EEEEEEETT---EEEEE-EE
T ss_pred CC-cccCCccEEcCc-EEEEEecCC---cEEEE-Ec
Confidence 11 11111 222244 666665443 23466 66
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=94.73 E-value=2.2 Score=42.87 Aligned_cols=219 Identities=12% Similarity=0.085 Sum_probs=107.0
Q ss_pred ceEEEEeCCCCc----eEEccCCCcccceeEEEEE-CCE-EEEEccCCCCCCCCeEEEEEC-CCCeEEEccCCCCCccee
Q psy10286 477 STVEVFDPLVGR----WQMAEAMSMLRSRVGVAVM-KNR-LYAFGGYNGSERLSTVEEFDP-VRRVWNKVSPMCFKRSAV 549 (748)
Q Consensus 477 ~~~~~yd~~~~~----W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~-~t~~W~~~~~~~~~r~~~ 549 (748)
..+..||..++. ...... ....-.+++.. ++. .++.|+.+ ..+..||. .+.+...+...+....-.
T Consensus 33 ~~v~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~v~ 105 (342)
T 1yfq_A 33 GSLTVYKFDIQAKNVDLLQSLR--YKHPLLCCNFIDNTDLQIYVGTVQ-----GEILKVDLIGSPSFQALTNNEANLGIC 105 (342)
T ss_dssp SEEEEEEEETTTTEEEEEEEEE--CSSCEEEEEEEESSSEEEEEEETT-----SCEEEECSSSSSSEEECBSCCCCSCEE
T ss_pred CeEEEEEeCCCCccccceeeee--cCCceEEEEECCCCCcEEEEEcCC-----CeEEEEEeccCCceEeccccCCCCceE
Confidence 456777766655 222221 11222233333 666 77777754 36889999 887766554411222222
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCC---e----EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKD---Q----WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~----W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
+++...+..++.|+.+ ..+..||..+. . .+.+..+..+..-.+++...+. ++.|+.+ ..+..
T Consensus 106 ~l~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d-----~~i~i 174 (342)
T 1yfq_A 106 RICKYGDDKLIAASWD-----GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNN-----SQVQW 174 (342)
T ss_dssp EEEEETTTEEEEEETT-----SEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEEST-----TEEEE
T ss_pred EEEeCCCCEEEEEcCC-----CeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCC-----CeEEE
Confidence 3333335556666654 46777876530 0 2222223322222344444555 5556553 36889
Q ss_pred EECCC-Cc--EEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCC--------cEEEccCCC--C--
Q psy10286 623 YDPKT-DE--WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITD--------EWKMIASMN--V-- 685 (748)
Q Consensus 623 yd~~~-~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~--------~W~~~~~~p--~-- 685 (748)
||..+ .. ...... +....-.+++.. ++..++.|+.++ .+.+||.... ....-.... .
T Consensus 175 ~d~~~~~~~~~~~~~~-~~~~~i~~i~~~~~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T 1yfq_A 175 FRLPLCEDDNGTIEES-GLKYQIRDVALLPKEQEGYACSSIDG-----RVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp EESSCCTTCCCEEEEC-SCSSCEEEEEECSGGGCEEEEEETTS-----EEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred EECCccccccceeeec-CCCCceeEEEECCCCCCEEEEEecCC-----cEEEEEEcCCCcccccccceeeeccccccccc
Confidence 99887 33 222211 111112222332 467778887543 4555554332 122111110 0
Q ss_pred -CCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 686 -MRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 686 -~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.......+.+ ++++++.|+.++ .+.+||..+++.
T Consensus 249 ~~~~~i~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~ 285 (342)
T 1yfq_A 249 NLAYPVNSIEFSPRHKFLYTAGSDG-----IISCWNLQTRKK 285 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTS-----CEEEEETTTTEE
T ss_pred ccceeEEEEEEcCCCCEEEEecCCc-----eEEEEcCccHhH
Confidence 0112222333 577777777543 589999987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.72 Score=46.03 Aligned_cols=188 Identities=13% Similarity=0.185 Sum_probs=91.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEE---CCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
+++.++.||.+ ..+..||..+.....+..+. ....-.+++.. ++.+++.|+.+ ..+..||..++.|
T Consensus 20 ~g~~las~s~D-----~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-----~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 20 YGKRMATCSSD-----KTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-----GKVMIWKEENGRW 89 (297)
T ss_dssp TSSEEEEEETT-----SCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-----TEEEEEEBSSSCB
T ss_pred CCCEEEEEeCC-----CEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-----CEEEEEEcCCCce
Confidence 56667777754 35777777644322222211 11111223322 26777778765 4678889888776
Q ss_pred EEccCCCCCCcceEEEEE--C--CEEEEEccCCCCcccCeEEEEECCCCc-EEEccCCCCCCcceeEEEE----------
Q psy10286 584 RIVKSMQKHRSAGGVIAF--D--SYVYALGGHDGLSIFDSVERYDPKTDE-WTSVKPMLTKRCRLGVAAL---------- 648 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---------- 648 (748)
..+..+.........+.+ + +.+++.|+.++ .+..||..+.. +... .+.........+.+
T Consensus 90 ~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~-----~v~~wd~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 90 SQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG-----KVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS-----EEEEEEBCSSSCBCCE-EEECCSSCEEEEEECCCC------
T ss_pred EEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC-----cEEEEEecCCCceeee-eeecccCccceEeecCCccccccc
Confidence 544332221112222222 2 56677777643 57777776542 2100 00000001111111
Q ss_pred -----CCEEEEEeccCCCccccEEEEEeCCC--CcEEEccCCCCCCcceEEEEE--C---CEEEEEeCCCCCCCCCeEEE
Q psy10286 649 -----NNKIYVCGGYDGAIFLQSVEMYDPIT--DEWKMIASMNVMRSRVALVAN--M---GKLWAIGGYDGVSNLPTVEV 716 (748)
Q Consensus 649 -----~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~r~~~~~~~~--~---~~l~v~GG~~~~~~~~~v~~ 716 (748)
+++.++.||.++ .|.+||..+ ..|.....+.........+.. + +.+++.|+.++ .+.+
T Consensus 164 ~~~~~~~~~l~sgs~D~-----~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-----~v~i 233 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADN-----LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-----TCII 233 (297)
T ss_dssp ------CCEEEEEETTS-----CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-----CEEE
T ss_pred CCCCCCcceEEEEcCCC-----cEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-----cEEE
Confidence 245778887654 466666544 346554444322222333333 2 47778887553 5777
Q ss_pred EeCCC
Q psy10286 717 YDPST 721 (748)
Q Consensus 717 yd~~~ 721 (748)
||..+
T Consensus 234 Wd~~~ 238 (297)
T 2pm7_B 234 WTQDN 238 (297)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 77765
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.69 E-value=1.7 Score=50.02 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=110.0
Q ss_pred ceEEEEeCCCCceEEccC--CC---cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCC------CeEE---E---
Q psy10286 477 STVEVFDPLVGRWQMAEA--MS---MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVR------RVWN---K--- 538 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~--~~---~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t------~~W~---~--- 538 (748)
.-+.+||+.+++++.... .. ....-+++... ++.||+- ... .-+.+||+.+ ..+. .
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig-T~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 465 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWIS-TCL-----GGIFVVDKHKLMQSTSGQYIAEQNYSV 465 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEEE-ESS-----SCEEEEEHHHHHHCCSSEEECSEEECG
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEEE-ECC-----CceEEEccccccccCCcceeccccccc
Confidence 468899999998876531 11 11112233332 5678873 221 2377787653 2232 1
Q ss_pred ccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC-Ccc-eEEEE-ECCEEEEEccCCCC
Q psy10286 539 VSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-RSA-GGVIA-FDSYVYALGGHDGL 614 (748)
Q Consensus 539 ~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~-~~~~~-~~~~iyv~GG~~~~ 614 (748)
...++.. .-.+...- +|.||+.||.. ..+.+||+.+++++....-... ... .++.. .+|.|++-. .
T Consensus 466 ~~~l~~~-~i~~i~~d~~g~lWi~~~t~-----~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt-~--- 535 (758)
T 3ott_A 466 HNGLSGM-FINQIIPDNEGNVWVLLYNN-----KGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF-H--- 535 (758)
T ss_dssp GGTCSCS-CEEEEEECTTSCEEEEETTC-----SSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE-T---
T ss_pred ccccccc-eeeeEEEcCCCCEEEEccCC-----CCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe-c---
Confidence 1122221 11222222 67899877643 4589999999999876421111 111 22222 257888643 2
Q ss_pred cccCeEEEEECCCCcEEEcc--CCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEE
Q psy10286 615 SIFDSVERYDPKTDEWTSVK--PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVAL 692 (748)
Q Consensus 615 ~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~ 692 (748)
..+.+||+.+++++... .+|. ..-.+++.-+|.||+.+. +.+.+||+++.+....+ ++......++
T Consensus 536 ---~Gl~~~~~~~~~~~~~~~~gl~~-~~i~~i~~~~g~lWi~t~-------~Gl~~~~~~~~~~~~~~-~~~~~~~~~~ 603 (758)
T 3ott_A 536 ---GGVMRINPKDESQQSISFGSFSN-NEILSMTCVKNSIWVSTT-------NGLWIIDRKTMDARQQN-MTNKRFTSLL 603 (758)
T ss_dssp ---TEEEEECC--CCCCBCCCCC----CCEEEEEEETTEEEEEES-------SCEEEEETTTCCEEEC---CCCCCSEEE
T ss_pred ---CceEEEecCCCceEEecccCCCc-cceEEEEECCCCEEEECC-------CCeEEEcCCCceeEEec-CCCCceeeeE
Confidence 35899999988876553 2332 222344444788888763 45889999998877653 3333333222
Q ss_pred EEE-CCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 693 VAN-MGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 693 ~~~-~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
... +|.|| |||.+ .+..|+|+
T Consensus 604 ~~~~~G~l~-fG~~~------Gl~~f~p~ 625 (758)
T 3ott_A 604 FDPKEDCVY-LGGAD------GFGISHSN 625 (758)
T ss_dssp EETTTTEEE-EECBS------EEEEEEC-
T ss_pred EECCCCcEE-EecCC------ceEEEChh
Confidence 222 56655 55533 35555554
|
| >1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=94.68 E-value=2.7 Score=38.97 Aligned_cols=145 Identities=9% Similarity=0.066 Sum_probs=83.8
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCC--CeEE--Ec----cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCe
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDK--DQWR--IV----KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDS 619 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~ 619 (748)
+++..+|++|+|-| +.+|+++... .... .+ +.+|.. . -++... ++++|+|-|. .
T Consensus 11 Ai~~~~g~~yfFkg-------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~-I-DAa~~~~~~~~~yfFkG~-------~ 74 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-L-DSVFEEPLSKKLFFFSGR-------Q 74 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-C-SEEEECTTTCCEEEEETT-------E
T ss_pred EEEEeCCEEEEEEC-------CEEEEEECCccccCCCcEEhhhccCCCCCC-c-cEEEEECCCCeEEEEeCC-------E
Confidence 34557999999988 5788887765 2222 12 234432 1 233333 6899999884 7
Q ss_pred EEEEECCCCcE-EEccC--CCCCCcceeEEE--ECCEEEEEeccCCCccccEEEEEeCCCCcEEE-----cc-CCC-CCC
Q psy10286 620 VERYDPKTDEW-TSVKP--MLTKRCRLGVAA--LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----IA-SMN-VMR 687 (748)
Q Consensus 620 ~~~yd~~~~~W-~~~~~--~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~~-~~p-~~r 687 (748)
.|+|+..+..- ..+.. +|..-...-++. .++++|++-| +..|.||..+++-.. +. ..+ .+.
T Consensus 75 yw~~~~~~~~~Pk~i~~~G~p~~~~~iDAA~~~~~g~~yfFkg-------~~ywr~d~~~~~~~~gyPr~i~~~w~Gvp~ 147 (195)
T 1itv_A 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVPL 147 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSCS
T ss_pred EEEEcCCccCCCEEeeecccCCCccceeEEEEcCCCeEEEEeC-------CEEEEEeCCcccccCCCccChhhcCCCCCC
Confidence 88888543211 11222 222111223333 3689999977 688999987754211 11 111 122
Q ss_pred cceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 688 SRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 688 ~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.-.++...++.+|+|-| +..+.||..+..=
T Consensus 148 ~idaa~~~~g~~Yffkg-------~~y~~~~~~~~~v 177 (195)
T 1itv_A 148 DTHDVFQFREKAYFCQD-------RFYWRVSSRSELN 177 (195)
T ss_dssp SCSEEEEETTEEEEEET-------TEEEEEECCTTCC
T ss_pred CCCEEEEeCCeEEEEeC-------CEEEEEECCccEE
Confidence 23345556899999987 4688898877653
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=94.67 E-value=1.9 Score=47.63 Aligned_cols=221 Identities=13% Similarity=0.034 Sum_probs=108.8
Q ss_pred ceEEEEeCCCC----c-eEEccCCCcccceeEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCC------eEEEccCC
Q psy10286 477 STVEVFDPLVG----R-WQMAEAMSMLRSRVGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRR------VWNKVSPM 542 (748)
Q Consensus 477 ~~~~~yd~~~~----~-W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~------~W~~~~~~ 542 (748)
..+..||..++ + -..+.....+. -.+++.. ++..++.|+.+ ..+..||..+. .......+
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~-v~~~~~sp~~~~~~l~s~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~ 112 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSV-VTTVKFSPIKGSQYLCSGDES-----GKVIVWGWTFDKESNSVEVNVKSEF 112 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSC-EEEEEECSSTTCCEEEEEETT-----SEEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred CeEEEEECCCCCCccccceEEecCCCce-EEEEEECcCCCCCEEEEecCC-----CEEEEEeCCCCcccccccccccchh
Confidence 46788888765 2 22222111110 1222222 56777777754 35777777544 33333222
Q ss_pred CC-CcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCE-EEEEccCCCCccc
Q psy10286 543 CF-KRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSY-VYALGGHDGLSIF 617 (748)
Q Consensus 543 ~~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~ 617 (748)
.. ...-.+++.. +++.++.||.+.. ....++.||... .-. .+.........+.+ ++. +++.|+.+
T Consensus 113 ~~~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~~-~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~d----- 182 (615)
T 1pgu_A 113 QVLAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGN-SLG---EVSGHSQRINACHLKQSRPMRSMTVGDD----- 182 (615)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTCC-EEE---ECCSCSSCEEEEEECSSSSCEEEEEETT-----
T ss_pred hcccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEECCC-cce---eeecCCccEEEEEECCCCCcEEEEEeCC-----
Confidence 21 1112222222 6666666664422 235677777322 111 12211112222222 333 67777764
Q ss_pred CeEEEEECCCCcEEEccCCCCCCc---ceeEEEE--C-CEEEEEeccCCCccccEEEEEeCCCCcEEEcc-CC--CCCCc
Q psy10286 618 DSVERYDPKTDEWTSVKPMLTKRC---RLGVAAL--N-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-SM--NVMRS 688 (748)
Q Consensus 618 ~~~~~yd~~~~~W~~~~~~p~~r~---~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~--p~~r~ 688 (748)
..+..||..+.+-... +..... ....+.+ + +..++.|+.+ ..+.+||..+.+....- .. .....
T Consensus 183 ~~v~vwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~ 255 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSAS--DRTHHKQGSFVRDVEFSPDSGEFVITVGSD-----RKISCFDGKSGEFLKYIEDDQEPVQGG 255 (615)
T ss_dssp TEEEEEETTTBEEEEE--ECSSSCTTCCEEEEEECSTTCCEEEEEETT-----CCEEEEETTTCCEEEECCBTTBCCCSC
T ss_pred CcEEEEeCCCcceeee--ecccCCCCceEEEEEECCCCCCEEEEEeCC-----CeEEEEECCCCCEeEEecccccccCCc
Confidence 4688898776553322 221111 2223333 4 6777888764 36889998877654322 10 11111
Q ss_pred ceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 689 RVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 689 ~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
-.++...+++.++.|+.+ ..+.+||..+++..
T Consensus 256 v~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~ 287 (615)
T 1pgu_A 256 IFALSWLDSQKFATVGAD-----ATIRVWDVTTSKCV 287 (615)
T ss_dssp EEEEEESSSSEEEEEETT-----SEEEEEETTTTEEE
T ss_pred eEEEEEcCCCEEEEEcCC-----CcEEEEECCCCcEE
Confidence 112222277788888754 36899999876543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=4.2 Score=41.03 Aligned_cols=189 Identities=15% Similarity=0.084 Sum_probs=104.5
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCC--eEEEccCC------CCCCc
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKD--QWRIVKSM------QKHRS 594 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~------~~~r~ 594 (748)
..+.++|+.+.+.........-..-+++++. +|++|+.... ...+.+||+... .-..+... .....
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~-----~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 143 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVA-----LHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC 143 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETT-----TTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECC-----CCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence 4699999987765432211111122344443 6789988653 257899998765 22222110 01111
Q ss_pred c-eEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC-------CCC-CcceeEEEE-C-CEEEEEeccCCC
Q psy10286 595 A-GGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-------LTK-RCRLGVAAL-N-NKIYVCGGYDGA 661 (748)
Q Consensus 595 ~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-------p~~-r~~~~~~~~-~-~~i~v~GG~~~~ 661 (748)
. ..+++. ++.+|+..+.. ...+.+||+....-..+... +.. ..-++++.- + +.|||....+
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~----~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~-- 217 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYC----NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN-- 217 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSS----CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT--
T ss_pred CCcEEEEeCCCCeEEEEeCCC----CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC--
Confidence 1 234443 68999998631 24799999665544433211 111 112344443 4 8999987543
Q ss_pred ccccEEEEEeCCCCcEEEc-cCCCCCCcceEEEEECCEEEEEeCCCC--CCCCCeEEEEeCCCCceEe
Q psy10286 662 IFLQSVEMYDPITDEWKMI-ASMNVMRSRVALVANMGKLWAIGGYDG--VSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~~v~~yd~~~~~W~~ 726 (748)
+.|.+||+.+.+.... ........-.+++...+.+|+..|... +.....+.++|+.+++...
T Consensus 218 ---~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~ 282 (329)
T 3fvz_A 218 ---GRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIID 282 (329)
T ss_dssp ---TEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEE
T ss_pred ---CEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEE
Confidence 5899999986665443 222222222334444577888777432 2234579999988876544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=94.65 E-value=4.1 Score=46.68 Aligned_cols=239 Identities=15% Similarity=0.112 Sum_probs=123.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCC---------CCCCeEEEEECCCCeE--EEccCCC-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGS---------ERLSTVEEFDPVRRVW--NKVSPMC- 543 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~---------~~~~~v~~yd~~t~~W--~~~~~~~- 543 (748)
..++.+|..+++..... .+..+. .+.+.. ++.||. +..+.. .....+++++..+..- ..+...+
T Consensus 189 ~~i~v~dl~tg~~~~~~-~~~~~~-~~~~wspD~~l~~-~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADE-LKWVKF-SGLAWLGNDALLY-SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EEEEEEETTTCCEEEEE-EEEEES-CCCEESTTSEEEE-EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEEEEEECCCCCCCCcc-CCCcee-ccEEEECCCEEEE-EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 46999999999875531 111110 112222 433433 332221 1245688888876641 1222222
Q ss_pred CCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCC--e-EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCe
Q psy10286 544 FKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKD--Q-WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDS 619 (748)
Q Consensus 544 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~-W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 619 (748)
.+....+... -+|+..++....+....+.++.+|..+. . |..+..-..... ......++.||+....++ ....
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~~dg~~l~~~s~~~~--~~~~ 342 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQLWFVSGDGA--PLKK 342 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEEEEETTEEEEEECTTC--TTCE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EEEeccCCEEEEEECCCC--CCCE
Confidence 1222223322 2665444433332223568999998877 6 777754332222 222345778887754422 2457
Q ss_pred EEEEECCC--CcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-EC
Q psy10286 620 VERYDPKT--DEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NM 696 (748)
Q Consensus 620 ~~~yd~~~--~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~ 696 (748)
++.+|..+ ..|+.+-+-... ...++...++.+++....++ ...++.+|.....-..+. +|.......... -+
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg---~~~l~~~~~~g~~~~~l~-~~~~~~v~~~~~s~d 417 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDA---KSQVLAFDLDGKPAGAVS-LPGIGSASGLSGRPG 417 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETT---EEEEEEEETTSCEEEECB-CSSSCEEEEEECCBT
T ss_pred EEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECC---EEEEEEEeCCCCceeecc-CCCCeEEEEeecCCC
Confidence 99999887 579887532211 12233444888888776544 357889997655444443 221111111111 13
Q ss_pred C-EEEEEe-CCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 697 G-KLWAIG-GYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 697 ~-~l~v~G-G~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
+ .|++.. +.. .-.+++.||..+++.+.+..
T Consensus 418 ~~~l~~~~ss~~---~P~~i~~~d~~tg~~~~l~~ 449 (741)
T 1yr2_A 418 DRHAYLSFSSFT---QPATVLALDPATAKTTPWEP 449 (741)
T ss_dssp CSCEEEEEEETT---EEEEEEEEETTTTEEEECSC
T ss_pred CCEEEEEEcCCC---CCCEEEEEECCCCcEEEEec
Confidence 3 344432 221 22478999999988776644
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=94.55 E-value=3.5 Score=42.40 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=43.7
Q ss_pred CCEEEEEeccCC-----CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 649 NNKIYVCGGYDG-----AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 649 ~~~i~v~GG~~~-----~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
++++|+....++ ....+.++++|.++.+ .+..++... -.+++.. +..||+.++ ++|.+||.++
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~-p~~ia~spdg~~l~v~n~-------~~v~v~D~~t 334 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD-ALSMTIDQQRNLMLTLDG-------GNVNVYDISQ 334 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT-CCEEEEETTTTEEEEECS-------SCEEEEECSS
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC-eeEEEECCCCCEEEEeCC-------CeEEEEECCC
Confidence 478998764221 1124689999998874 444444444 4555444 456665542 5799999988
Q ss_pred CceEecCC
Q psy10286 722 DSWAFVAP 729 (748)
Q Consensus 722 ~~W~~~~~ 729 (748)
+.-+.+..
T Consensus 335 ~~l~~~~~ 342 (361)
T 2oiz_A 335 PEPKLLRT 342 (361)
T ss_dssp SSCEEEEE
T ss_pred CcceeeEE
Confidence 73355554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.97 Score=45.78 Aligned_cols=153 Identities=16% Similarity=0.074 Sum_probs=79.9
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++.+|+.++.+ ..++++|+.+++....-+.+.....+..+.. ++ .+|+.++.+ ..+..||+.+++...
T Consensus 10 ~~~~~v~~~~~-----~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-----~~i~~~d~~t~~~~~ 79 (349)
T 1jmx_B 10 GHEYMIVTNYP-----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNTF 79 (349)
T ss_dssp TCEEEEEEETT-----TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred CCEEEEEeCCC-----CeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC-----CcEEEEeCCCCcEEE
Confidence 67788887643 5799999999876543333321122333333 44 578776432 579999999887543
Q ss_pred ccCCCC-----CCcceEEEEE-CC-EEEEEccC---CCC---cccCeEEEEECCCCcEEE-ccCCCCCCcceeEEE-ECC
Q psy10286 586 VKSMQK-----HRSAGGVIAF-DS-YVYALGGH---DGL---SIFDSVERYDPKTDEWTS-VKPMLTKRCRLGVAA-LNN 650 (748)
Q Consensus 586 ~~~~~~-----~r~~~~~~~~-~~-~iyv~GG~---~~~---~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~ 650 (748)
.-..+. ...-..++.. ++ .+|+.+.. ... .....+..||+.+++-.. +.....++...+++. -++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg 159 (349)
T 1jmx_B 80 HANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG 159 (349)
T ss_dssp EEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS
T ss_pred EEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC
Confidence 322221 1111233332 44 55554421 000 002579999987743211 111122222233332 256
Q ss_pred EEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 651 KIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 651 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
++|+.++ +++++|+.+.+-.
T Consensus 160 ~l~~~~~--------~i~~~d~~~~~~~ 179 (349)
T 1jmx_B 160 SLYVAGP--------DIYKMDVKTGKYT 179 (349)
T ss_dssp CEEEESS--------SEEEECTTTCCEE
T ss_pred cEEEccC--------cEEEEeCCCCcee
Confidence 6777432 3888888776644
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=94.53 E-value=2.5 Score=47.57 Aligned_cols=190 Identities=8% Similarity=-0.015 Sum_probs=107.0
Q ss_pred ceEEEEeCCC------CceEEcc-CCCcccceeEEEE-ECCEEEEEccCCCCC---CCCeEEEEECC-CC---eEEEccC
Q psy10286 477 STVEVFDPLV------GRWQMAE-AMSMLRSRVGVAV-MKNRLYAFGGYNGSE---RLSTVEEFDPV-RR---VWNKVSP 541 (748)
Q Consensus 477 ~~~~~yd~~~------~~W~~~~-~~~~~r~~~~~~~-~~~~iyv~GG~~~~~---~~~~v~~yd~~-t~---~W~~~~~ 541 (748)
..++.+|..+ ++...+. .-.. .....+. -+|+..++...+... ....++.+|.. ++ +...+..
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAHR--FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCSS--EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred eEEEEEECCCCccccCCceeEEEecCCC--cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 5789999988 6666665 3221 1111112 255544444332211 23579999998 56 3444332
Q ss_pred CCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC----c---ceEEEEE-CCEEEEEccCC
Q psy10286 542 MCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR----S---AGGVIAF-DSYVYALGGHD 612 (748)
Q Consensus 542 ~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r----~---~~~~~~~-~~~iyv~GG~~ 612 (748)
-. .......+.. +|++|+.+..++ ...++.+|+.++++..+.+..... + ....+.. ++++++.+..
T Consensus 239 ~~-~~~~~~~~~spdg~l~~~~~~~~---~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~- 313 (662)
T 3azo_A 239 GP-EEAIAQAEWAPDGSLIVATDRTG---WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK- 313 (662)
T ss_dssp ET-TBCEEEEEECTTSCEEEEECTTS---SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-
T ss_pred CC-CceEcceEECCCCeEEEEECCCC---CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-
Confidence 11 1122233333 778887776543 247999999899998875432211 1 1223333 6777777654
Q ss_pred CCcccCeEEEEECCCCcEEEccCCCCCCcceeE-EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGV-AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ ...++.+|..+.+.+.+... ....... ..-++.+++..+... ....++.+|..+.+.+.+
T Consensus 314 ~---~~~l~~~d~~~~~~~~l~~~--~~~~~~~~s~~~~~~~~~~~~~~--~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 314 G---AAVLGILDPESGELVDAAGP--WTEWAATLTVSGTRAVGVAASPR--TAYEVVELDTVTGRARTI 375 (662)
T ss_dssp S---SCEEEEEETTTTEEEECCSS--CCEEEEEEEEETTEEEEEEEETT--EEEEEEEEETTTCCEEEE
T ss_pred C---ccEEEEEECCCCcEEEecCC--CCeEEEEEecCCCEEEEEEcCCC--CCCEEEEEECCCCceEEe
Confidence 3 45799999988887776432 1111222 334666666654322 235789999988887776
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.52 E-value=3.5 Score=40.82 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=116.7
Q ss_pred ceEeecCCCCceeeccc-cc----ccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEE
Q psy10286 439 TVEVFDPLVGRWQMAEE-ET----LSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYA 513 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~-~~----~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv 513 (748)
++..||..+++....-. .. +....+..++.....|..-..+..+|..+++-...-.. ..........++.+.+
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~--h~~~~~~~~~~~~~l~ 123 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS--HSARVGSLSWNSYILS 123 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEEETTEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC--ccceEEEeecCCCEEE
Confidence 68899998887654321 11 11222333433333344445788899888764332211 1112223334556666
Q ss_pred EccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE--EEccCCC
Q psy10286 514 FGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW--RIVKSMQ 590 (748)
Q Consensus 514 ~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~ 590 (748)
.|+.+ ..+..++..+.......... ...........+++.++.|+.+ ..+..||..+.+- .......
T Consensus 124 s~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~ 193 (318)
T 4ggc_A 124 SGSRS-----GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGGWVPLQTFT 193 (318)
T ss_dssp EEETT-----SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTBSCCSEEEC
T ss_pred EEecC-----CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCcccccceeeec
Confidence 66643 24455555544322111111 1111112222256666677654 3567788765431 1111111
Q ss_pred CCCcc-eEEEEE--CC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccE
Q psy10286 591 KHRSA-GGVIAF--DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQS 666 (748)
Q Consensus 591 ~~r~~-~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 666 (748)
..... .+.+.. ++ .+++.+|.. ...+..+|..+..-..................++.+++.+|... ..
T Consensus 194 ~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d----~~ 265 (318)
T 4ggc_A 194 QHQGAVKAVAWCPWQSNVLATGGGTS----DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ----NQ 265 (318)
T ss_dssp CCCSCEEEEEECTTSTTEEEEEECTT----TCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT----CC
T ss_pred ccCCceEEEEecCCCCcEEEEEecCC----CCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCC----CE
Confidence 11111 111221 23 334444432 23577788877665443222211111111122456666555322 46
Q ss_pred EEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 667 VEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 667 v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+.+||..+.+- +..+........++.+ ++++++.||.++ .|.++|..
T Consensus 266 i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D~-----~v~iWd~~ 314 (318)
T 4ggc_A 266 LVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADE-----TLRLWRCF 314 (318)
T ss_dssp EEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTT-----EEEEECCS
T ss_pred EEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCC-----eEEEEECC
Confidence 88999876542 2223222222223333 677888888653 57777764
|
| >2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.018 Score=50.25 Aligned_cols=86 Identities=14% Similarity=0.196 Sum_probs=59.9
Q ss_pred ccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 75 CDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 75 ~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
.=|+|.|+|+.|...+..|.... ..||... +. ... ......++-+ +
T Consensus 35 ~~V~LNVGG~~F~T~~~TL~~~P---~S~L~~~--~~--~~~--------------------------~~~~~g~yFi-D 80 (140)
T 2nz0_B 35 ELIVLNVSGRRFQTWRTTLERYP---DTLLGST--EK--EFF--------------------------FNEDTKEYFF-D 80 (140)
T ss_dssp CEEEEEETTEEEEEEHHHHHTCT---TSTTTSG--GG--GGS--------------------------EETTTTEEEE-C
T ss_pred CEEEEEECCEEEEeeHHHHhcCC---Ceeeccc--CC--ccc--------------------------ccCCCCeEEE-e
Confidence 45788899999999998886432 2344331 00 000 0112233333 4
Q ss_pred CCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhH
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKV 194 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l 194 (748)
=++..|+.+|+|+-+|++.+..+ .+..+++-|++|+|+.+
T Consensus 81 Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l 121 (140)
T 2nz0_B 81 RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPE 121 (140)
T ss_dssp SCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGG
T ss_pred CCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChH
Confidence 59999999999999999987655 48889999999999987
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=1.7 Score=48.07 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=72.2
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeC-CCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCe
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEP-DKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDS 619 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~ 619 (748)
-++.++.+|+.+.. ...++.+|. .+.+ |+.-...+.. ....+.++.+++||+.... ..
T Consensus 58 P~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------g~ 126 (571)
T 2ad6_A 58 PLVIGDMMYVHSAF-----PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN------GH 126 (571)
T ss_dssp CEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT------SE
T ss_pred cEEECCEEEEEeCC-----CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCC------CE
Confidence 34569999997652 246899998 6654 9876443211 1123456779999987542 46
Q ss_pred EEEEECCCC--cEEEccCC-CCC-CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEc
Q psy10286 620 VERYDPKTD--EWTSVKPM-LTK-RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMI 680 (748)
Q Consensus 620 ~~~yd~~~~--~W~~~~~~-p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (748)
++.+|..+. .|+.-..- +.. ....+.++.++.+|+..+.........++.||.++.+ |+.-
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 999999877 58754221 111 1122334568888775432111123579999998764 8753
|
| >1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.022 Score=46.58 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=57.8
Q ss_pred EEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|.|+|+.|...+..|+..- ..+.+|+.+... -.....++-+ +=
T Consensus 3 v~LNVGG~~f~t~~~TL~~~p~s~L~~~~~~~~~---------------------------------~~~~~~eyFi-DR 48 (100)
T 1t1d_A 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRY---------------------------------YDPLRNEYFF-DR 48 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGG---------------------------------EETTTTEEEE-CS
T ss_pred EEEEECCEEEEeeHHHHhcCCCccccchhccccc---------------------------------cCCCceeEEE-cC
Confidence 688999999999999885431 122233321000 0011222323 56
Q ss_pred CHHHHHHHHHhhhc-eeEEeech-hHHHHHHHHHHhcchhHH
Q psy10286 156 DAVAMEALINFVYS-GRVTIHSQ-NVQSLMVVASFLQMQKVA 195 (748)
Q Consensus 156 ~~~~~~~~l~flYt-g~~~i~~~-~v~~ll~~A~~l~i~~l~ 195 (748)
++..|+.+|+|+-+ |++.++.+ .+..+++-|++|+|+++.
T Consensus 49 dp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~~ 90 (100)
T 1t1d_A 49 NRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENA 90 (100)
T ss_dssp CSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred ChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHHH
Confidence 89999999999999 89977655 578899999999998855
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.26 Score=52.60 Aligned_cols=187 Identities=14% Similarity=0.052 Sum_probs=96.0
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-CCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-CFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
++.+.+.|+.++ .+..||..+......-.. .....-.+++.. ++..++.||.+ ..+-+||..++...
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D-----~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME-----GTTRLQDFKGNILR 200 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS-----SCEEEEETTSCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC-----CEEEEeeccCCcee
Confidence 455777787553 577888876643332221 122222333432 56677778765 35788899887765
Q ss_pred EccCCCCCC-cceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE---CCEEEEEeccC
Q psy10286 585 IVKSMQKHR-SAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL---NNKIYVCGGYD 659 (748)
Q Consensus 585 ~~~~~~~~r-~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~ 659 (748)
......... ...++.. -++.+++.|+.++ .+..+|..... +..+.........+.+ ++.+++.||.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCc
Confidence 553322211 1222333 3677778887644 58888876543 2222221222233333 34577777755
Q ss_pred CCccccEEEEEeCCCCcEEE-ccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 660 GAIFLQSVEMYDPITDEWKM-IASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+ .|.+||..+.+-.. +...........++.+ +++.++.||.++ .|.+||..+.
T Consensus 273 ~-----~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~-----~i~iwd~~~~ 328 (435)
T 4e54_B 273 Q-----TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS-----EIRVYSASQW 328 (435)
T ss_dssp S-----BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS-----CEEEEESSSS
T ss_pred c-----eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC-----EEEEEECCCC
Confidence 3 46678876543211 1000101111122222 566777777543 4777777653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=2.2 Score=48.37 Aligned_cols=118 Identities=15% Similarity=0.246 Sum_probs=73.9
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
-++.++.||+... ...++.+|..+.+ |+.-...+.. ....+.++.+++||+.... ..+
T Consensus 73 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d------g~l 140 (677)
T 1kb0_A 73 PVVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD------GRL 140 (677)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT------SEE
T ss_pred CEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCC------CEE
Confidence 3457999998765 2578999988775 8876543311 1223456678999986432 469
Q ss_pred EEEECCCCc--EEEccC-CCC--CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEc
Q psy10286 621 ERYDPKTDE--WTSVKP-MLT--KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMI 680 (748)
Q Consensus 621 ~~yd~~~~~--W~~~~~-~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (748)
+.+|..+.+ |+.-.. -+. .....+.++.++.+|+..+.........++.||..+.+ |+.-
T Consensus 141 ~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp EEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 999998764 876432 111 11223345568888775542222234689999998765 8764
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=94.25 E-value=4.1 Score=40.79 Aligned_cols=186 Identities=13% Similarity=0.144 Sum_probs=95.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK 587 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 587 (748)
++...+.|+.+ ..+..++........................++..++.|+.+ ..+..||.....-....
T Consensus 97 dg~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-----~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 97 DGQFALSGSWD-----GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-----KTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEEC
T ss_pred CCCEEEEEccc-----ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC-----CeEEEEEeCCCceEEEE
Confidence 56777777754 357788888776554433332222222222355666677654 34567776654432222
Q ss_pred CCCCCCcceEEEEE----CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCC
Q psy10286 588 SMQKHRSAGGVIAF----DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGA 661 (748)
Q Consensus 588 ~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 661 (748)
.... ......+.+ .+.+++.||.++ .+..||..+.+....-.. ......++.+ ++++++.||.+
T Consensus 167 ~~~~-~~~v~~~~~~~~~~~~~~~s~~~d~-----~i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~D-- 236 (340)
T 4aow_A 167 DESH-SEWVSCVRFSPNSSNPIIVSCGWDK-----LVKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKD-- 236 (340)
T ss_dssp SSSC-SSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETT--
T ss_pred eccc-cCcccceEEccCCCCcEEEEEcCCC-----EEEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCC--
Confidence 1111 111122222 234566666543 578889887765432111 1111222233 57788888765
Q ss_pred ccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 662 IFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..+.+||..+.+-.. .+.....-..+....+..++.||.+ ..+.+||.++..
T Consensus 237 ---g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~d-----~~i~iwd~~~~~ 288 (340)
T 4aow_A 237 ---GQAMLWDLNEGKHLY--TLDGGDIINALCFSPNRYWLCAATG-----PSIKIWDLEGKI 288 (340)
T ss_dssp ---CEEEEEETTTTEEEE--EEECSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTE
T ss_pred ---CeEEEEEeccCceee--eecCCceEEeeecCCCCceeeccCC-----CEEEEEECCCCe
Confidence 368889987654322 2222222223333344455556543 368888887764
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=4.6 Score=40.76 Aligned_cols=187 Identities=10% Similarity=0.050 Sum_probs=97.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.+|+++... ..+++||+.+++..... .+. .-.+.+. -+|++|+... ..+++||+.+++++.+
T Consensus 60 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~-~~~--~v~~i~~~~dg~l~v~~~-------~gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 60 SGTAWWFNILE-----RELHELHLASGRKTVHA-LPF--MGSALAKISDSKQLIASD-------DGLFLRDTATGVLTLH 124 (326)
T ss_dssp TTEEEEEEGGG-----TEEEEEETTTTEEEEEE-CSS--CEEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCC-----CEEEEEECCCCcEEEEE-CCC--cceEEEEeCCCeEEEEEC-------CCEEEEECCCCcEEEE
Confidence 36788876432 47899999988765443 221 2223333 3788887642 3599999999988776
Q ss_pred cCCCCC----CcceEEEEECCEEEEEccC-CCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC-EEEEEeccC
Q psy10286 587 KSMQKH----RSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN-KIYVCGGYD 659 (748)
Q Consensus 587 ~~~~~~----r~~~~~~~~~~~iyv~GG~-~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~ 659 (748)
...+.. +....++.-+|++|+.... ........+++|| +.+...+.. ......+.+.- ++ .+|+....
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~- 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTK- 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETT-
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECC-
Confidence 543321 1112222226778764321 1111235799999 456554421 00111233322 34 57776532
Q ss_pred CCccccEEEEEeCC--CC-c------EEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 660 GAIFLQSVEMYDPI--TD-E------WKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 660 ~~~~~~~v~~yd~~--~~-~------W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.+.|++||.. +. . +..+... ...-.+++.- +|.+|+.... ...+.+||+....-.
T Consensus 200 ----~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~-----~~~v~~~d~~g~~~~ 264 (326)
T 2ghs_A 200 ----VNRLMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWG-----EGAVDRYDTDGNHIA 264 (326)
T ss_dssp ----TCEEEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEET-----TTEEEEECTTCCEEE
T ss_pred ----CCEEEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeC-----CCEEEEECCCCCEEE
Confidence 2578999875 43 2 2222110 1111222222 5778876421 136888998544333
|
| >2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.0093 Score=53.90 Aligned_cols=56 Identities=11% Similarity=0.294 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHhhccee---------------------------EEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCC
Q psy10286 218 FSCRAMEALINFAYSGR---------------------------VTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 270 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~---------------------------~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~ 270 (748)
.+...|+.+++|+|... +.+...++.+|+.+|++|++..|.+.|++++...+.
T Consensus 47 V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ik 126 (160)
T 2p1m_A 47 VTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIK 126 (160)
T ss_dssp SCHHHHHHHHHC------------------------------------------CHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 34567777888887754 356778889999999999999999999999988774
Q ss_pred CCC
Q psy10286 271 PNN 273 (748)
Q Consensus 271 ~~n 273 (748)
-.+
T Consensus 127 gkt 129 (160)
T 2p1m_A 127 GKT 129 (160)
T ss_dssp TCC
T ss_pred CCC
Confidence 444
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=94.17 E-value=0.7 Score=46.64 Aligned_cols=189 Identities=16% Similarity=0.188 Sum_probs=94.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-CcceeEEEEE---CCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-KRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++...+.||.+ ..+..||..++....+..+.. ...-.+++.. ++.+++.||.+ ..+..||..+..|
T Consensus 24 ~g~~lasgs~D-----~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D-----~~v~iWd~~~~~~ 93 (316)
T 3bg1_A 24 YGTRLATCSSD-----RSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD-----RKVIIWREENGTW 93 (316)
T ss_dssp GGCEEEEEETT-----TEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT-----SCEEEECCSSSCC
T ss_pred CCCEEEEEeCC-----CeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC-----CEEEEEECCCCcc
Confidence 45666777744 467778877765433322211 1111223322 26677777765 4678899888776
Q ss_pred EEccCCCCCCcc-eEEEEE-C--CEEEEEccCCCCcccCeEEEEECCCC-cEEEccCCCCCCcceeEEEE----------
Q psy10286 584 RIVKSMQKHRSA-GGVIAF-D--SYVYALGGHDGLSIFDSVERYDPKTD-EWTSVKPMLTKRCRLGVAAL---------- 648 (748)
Q Consensus 584 ~~~~~~~~~r~~-~~~~~~-~--~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~---------- 648 (748)
.....+...... .+++.. + +.+++.|+.++ .+..+|..+. .|...............+.+
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp CEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred eEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 544333222111 222222 2 56777777654 4677777655 57543322111111111111
Q ss_pred ---------CCEEEEEeccCCCccccEEEEEeCC-CCcEEEccCCCCCCcceEEEEE--C----CEEEEEeCCCCCCCCC
Q psy10286 649 ---------NNKIYVCGGYDGAIFLQSVEMYDPI-TDEWKMIASMNVMRSRVALVAN--M----GKLWAIGGYDGVSNLP 712 (748)
Q Consensus 649 ---------~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~~~~~~~--~----~~l~v~GG~~~~~~~~ 712 (748)
.++.++.||.++ .+.+||.. ...|..+..+.........+.. + +.+++.|+.++
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D~-----~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~----- 238 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCDN-----LIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG----- 238 (316)
T ss_dssp --CCSCCCCCCCBEECCBTTS-----BCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-----
T ss_pred ccccccCccccceEEEecCCC-----eEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-----
Confidence 134666776543 45666665 3457666544332222222332 2 25666666442
Q ss_pred eEEEEeCCC
Q psy10286 713 TVEVYDPST 721 (748)
Q Consensus 713 ~v~~yd~~~ 721 (748)
.+.+||..+
T Consensus 239 ~v~iw~~~~ 247 (316)
T 3bg1_A 239 RVFIWTCDD 247 (316)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEccC
Confidence 567777654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=8.4 Score=46.04 Aligned_cols=102 Identities=14% Similarity=0.014 Sum_probs=57.7
Q ss_pred CeEE-EEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE
Q psy10286 618 DSVE-RYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA 694 (748)
Q Consensus 618 ~~~~-~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (748)
..++ .||..+.+...+. ... .....+.+ +++.+++++.+ ..++++|..+.+-..+..-........+..
T Consensus 358 ~~l~~~~d~~~~~~~~l~--~~~-~~~~~~~~SpDG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFE--ENL-GNVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEEEEEETTTCCEEECC--CCC-CSEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CceEEEEECCCCCceEec--CCc-cceeeeEECCCCCEEEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEEC
Confidence 3688 8898887766654 111 12222233 56666666543 489999999887766532222221222222
Q ss_pred ECCEEEEEeCCCC-----CCCCCeEEEEeCCCCceEec
Q psy10286 695 NMGKLWAIGGYDG-----VSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 695 ~~~~l~v~GG~~~-----~~~~~~v~~yd~~~~~W~~~ 727 (748)
-+++.+++++.+. ......++++|..++....+
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 3666666655432 11234789999988775544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=6.1 Score=43.48 Aligned_cols=285 Identities=12% Similarity=0.046 Sum_probs=146.4
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCC--CCcee-ecccccccce-EEe-----cccccccCCCccceEEEEeCCCCceEE
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPL--VGRWQ-MAEEETLSNA-VIS-----TKSCLTKAGDSLSTVEVFDPLVGRWQM 491 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~--~~~W~-~~~~~~~~~~-~~~-----~~~~~~~~g~~~~~~~~yd~~~~~W~~ 491 (748)
+..+|+.+. ...+..||.. +.+-. .+........ .++ .+..++......+.+..+|..+.+=..
T Consensus 208 Gr~lyv~~~-------dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~ 280 (567)
T 1qks_A 208 GRYLFVIGR-------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 280 (567)
T ss_dssp SCEEEEEET-------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred CCEEEEEcC-------CCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEE
Confidence 456777542 1368899985 43221 1111111122 233 233455544445678889987765432
Q ss_pred c-c--CC--------CcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EE
Q psy10286 492 A-E--AM--------SMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KL 558 (748)
Q Consensus 492 ~-~--~~--------~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~i 558 (748)
. + .+ |.+|...-.+..++..+++-- .....++..|..+.....+..++.++.-|....- ++ ++
T Consensus 281 ~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~ 356 (567)
T 1qks_A 281 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYF 356 (567)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEE
T ss_pred EEeccccccccccccCCCceEEEEEcCCCCEEEEEe----cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEE
Confidence 2 1 11 122332222222333333321 1235788899887766555556666776766554 44 45
Q ss_pred EEEeCCCCCCCCceEEEEeCCCCeEEEc----cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCc---
Q psy10286 559 YVCGGYDGVSSLNTVECYEPDKDQWRIV----KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDE--- 629 (748)
Q Consensus 559 yv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--- 629 (748)
|+... ..+.+.++|..+++=... ...|.+..+.. ... ++.+|+.+-.. ...+..+|..+..
T Consensus 357 ~va~~-----~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g----~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 357 ITAAN-----ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMG----DDSVALIGTDPEGHPD 426 (567)
T ss_dssp EEEEG-----GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSS----SSEEEEEECCTTTCTT
T ss_pred EEEeC-----CCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCC----CCeEEEecCCCCCCcc
Confidence 55433 236799999998863322 23344433332 233 36788765321 2468888877633
Q ss_pred --EEEccCCCCCCcc-eeEEEE--CCEEEEEeccCCC-ccccEEEEEeCCCC-------cEEEcc-----CCC--CCCcc
Q psy10286 630 --WTSVKPMLTKRCR-LGVAAL--NNKIYVCGGYDGA-IFLQSVEMYDPITD-------EWKMIA-----SMN--VMRSR 689 (748)
Q Consensus 630 --W~~~~~~p~~r~~-~~~~~~--~~~i~v~GG~~~~-~~~~~v~~yd~~~~-------~W~~~~-----~~p--~~r~~ 689 (748)
|+.+..++....+ ..+... +..+||---.+.. ...++|.+||..+. .+..++ .++ ..|..
T Consensus 427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 506 (567)
T 1qks_A 427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVV 506 (567)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEE
T ss_pred ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceE
Confidence 8777655433221 222233 3467775422211 12468999998765 234442 232 22333
Q ss_pred eEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 690 VALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 690 ~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
|....- +.++|+--+ ++....+.|.+||.+|.+-...
T Consensus 507 ~~~~~~~G~~~~~s~~-~~~~~~~~i~v~D~~t~~~~~~ 544 (567)
T 1qks_A 507 QGEFNKDGTEVWFSVW-NGKDQESALVVVDDKTLELKHV 544 (567)
T ss_dssp EEEECTTSSEEEEEEE-CCTTSCCEEEEEETTTTEEEEE
T ss_pred eeeECCCCCEEEEEee-cCCCCCCcEEEEECCCceEEEE
Confidence 332222 567887622 2222346899999988765543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=94.08 E-value=1.6 Score=43.65 Aligned_cols=216 Identities=13% Similarity=0.059 Sum_probs=106.6
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC-c--cee
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK-R--SAV 549 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-r--~~~ 549 (748)
.....+++|++ +++........ ..-.+++.. +|++|+.... ...+.+||+. ++.+.+...... + .-.
T Consensus 64 ~~~~~i~~~~~-~g~~~~~~~~~--~~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~ 134 (305)
T 3dr2_A 64 LVGRRVLGWRE-DGTVDVLLDAT--AFTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAHLLVGRYAGKRLNSPN 134 (305)
T ss_dssp TTTTEEEEEET-TSCEEEEEESC--SCEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred CCCCEEEEEeC-CCCEEEEeCCC--CccceeeECCCCCEEEEECC-----CCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence 33456888888 44443332111 111233332 6788876421 2468889986 556554321111 1 111
Q ss_pred EEEE-ECCEEEEE----eCCC---C-----CCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCC
Q psy10286 550 GAAA-LNDKLYVC----GGYD---G-----VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGL 614 (748)
Q Consensus 550 ~~~~-~~~~iyv~----GG~~---~-----~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~ 614 (748)
.++. -+|.+|+. |-.. + ......+++||+.+++++.+..+ . .-.+.+.. ++ .+|+.......
T Consensus 135 ~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--~-~p~gl~~spdg~~lyv~~~~~~~ 211 (305)
T 3dr2_A 135 DLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADL--D-HPNGLAFSPDEQTLYVSQTPEQG 211 (305)
T ss_dssp CEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEE--S-SEEEEEECTTSSEEEEEECCC--
T ss_pred CEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecC--C-CCcceEEcCCCCEEEEEecCCcC
Confidence 2333 37889985 3221 0 11236799999988887765411 1 11233333 34 58876543211
Q ss_pred cccCeEEEEECCCCcEEEc---cCCCCCCcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce
Q psy10286 615 SIFDSVERYDPKTDEWTSV---KPMLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV 690 (748)
Q Consensus 615 ~~~~~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 690 (748)
.....+++||...+..... ...+. ..-.+++. -+|.||+..+ +.|.+||++......+.. +.. -.
T Consensus 212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~~~~~-~~~--~~ 280 (305)
T 3dr2_A 212 HGSVEITAFAWRDGALHDRRHFASVPD-GLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLGHIPT-PGT--AS 280 (305)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSS-SCCCSEEECTTSCEEECCS-------SEEEEECTTSCEEEEEEC-SSC--CC
T ss_pred CCCCEEEEEEecCCCccCCeEEEECCC-CCCCeEEECCCCCEEEecC-------CcEEEECCCCCEEEEEEC-CCc--ee
Confidence 1125799999876543211 11111 11122333 2567777652 359999997665555432 221 12
Q ss_pred EEEE--ECCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 691 ALVA--NMGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 691 ~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.++. -++.||+... ..++.++.
T Consensus 281 ~~~f~~d~~~L~it~~-------~~l~~~~~ 304 (305)
T 3dr2_A 281 NCTFDQAQQRLFITGG-------PCLWMLPL 304 (305)
T ss_dssp EEEECTTSCEEEEEET-------TEEEEEEC
T ss_pred EEEEeCCCCEEEEEcC-------CeEEEEEC
Confidence 2222 2356777643 25666654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.55 Score=48.45 Aligned_cols=188 Identities=14% Similarity=0.148 Sum_probs=90.4
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC---CCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM---CFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++.++ .|+.+ ..+..||..+++-...... .....-.+++.. +++.++.|+.+ ..+..||..+++-
T Consensus 105 d~~~l-~~s~d-----g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~~ 173 (357)
T 4g56_B 105 EKGIL-VASDS-----GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKAV 173 (357)
T ss_dssp TTEEE-EEETT-----SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTEE
T ss_pred CCCEE-EEECC-----CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCcE
Confidence 45544 45533 3577888776542221111 111111222222 67777888765 3578899888764
Q ss_pred EEccCCCCCCcce-EEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE---CCEEEEEec
Q psy10286 584 RIVKSMQKHRSAG-GVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL---NNKIYVCGG 657 (748)
Q Consensus 584 ~~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 657 (748)
... +......- +++.. ++.+++.||.++ .+..||..+.+-...............+.+ ++.+++.|+
T Consensus 174 ~~~--~~~h~~~v~~v~~s~~~~~~~~s~~~dg-----~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 174 LKS--YNAHSSEVNCVAACPGKDTIFLSCGEDG-----RILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp EEE--ECCCSSCEEEEEECTTCSSCEEEEETTS-----CEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred EEE--EcCCCCCEEEEEEccCCCceeeeeccCC-----ceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 332 11111111 22222 335777777644 578888877653322222222222233333 456788887
Q ss_pred cCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--C-CEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 658 YDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--M-GKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.+ ..|.+||..+.+- +..+.........+.+ + +++++.|+.++ .|.+||..+++..
T Consensus 247 ~d-----~~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-----~i~iwd~~~~~~~ 305 (357)
T 4g56_B 247 ET-----GNVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDC-----TVAVLDADFSEVF 305 (357)
T ss_dssp SS-----SCEEEEESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTS-----CEEEECTTSCEEE
T ss_pred cc-----cceeEEECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCC-----EEEEEECCCCcEe
Confidence 54 3588899876431 1111111122222322 3 46666776543 5889998877543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=93.85 E-value=6.6 Score=40.13 Aligned_cols=212 Identities=11% Similarity=0.077 Sum_probs=120.8
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc--CCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS--PMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~ 552 (748)
..+..+++.......+..- ...-.+++.. ++.||+.-- ....++++++.....+.+. .+..+ .+.+
T Consensus 53 ~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D~-----~~~~I~r~~~~g~~~~~~~~~~~~~p---~gla 122 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSDV-----TLDRILRANLNGSNVEEVVSTGLESP---GGLA 122 (349)
T ss_dssp SCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEET-----TTTEEEEEETTSCSCEEEECSSCSCC---CEEE
T ss_pred cceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEec-----cCCceEEEecCCCCceEEEeCCCCCc---cEEE
Confidence 4577888877766654321 1223444443 688998753 2357999999876544432 22222 2344
Q ss_pred E--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECC
Q psy10286 553 A--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 553 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
+ .++.||+.-.. .+.++++++....-..+. .+..| .++++. ++.||+..... ...++++++.
T Consensus 123 vd~~~g~ly~~d~~-----~~~I~~~~~dG~~~~~l~~~~l~~P---~~iavdp~~g~ly~td~~~----~~~I~r~~~d 190 (349)
T 3v64_C 123 VDWVHDKLYWTDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWGN----TPRIEASSMD 190 (349)
T ss_dssp EETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECTTCSCE---EEEEEETTTTEEEEEECSS----SCEEEEEETT
T ss_pred EecCCCeEEEEcCC-----CCeEEEEcCCCCceEEEEeCCCCCc---ceEEEecCcCeEEEeccCC----CCEEEEEeCC
Confidence 4 37899988542 357888988765433332 22223 234443 78999876432 3579999987
Q ss_pred CCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeC
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
...-+.+..-.. ..-.+.+.- +++||+.-.. .+.|+.+|+....-..+..... ..-.++++.++.||+.--
T Consensus 191 G~~~~~~~~~~~-~~PnGla~d~~~~~lY~aD~~-----~~~I~~~~~dG~~~~~~~~~~~-~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 191 GSGRRIIADTHL-FWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQGL-PHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp SCSCEESCCSSC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSC-SSEEEEEEETTEEEEEET
T ss_pred CCCcEEEEECCC-CCcceEEEeCCCCEEEEEECC-----CCEEEEEeCCCCceEEEEeCCC-CCceEEEEECCEEEEecC
Confidence 655444422111 112344443 7899998642 3689999987543333221111 122455667899999853
Q ss_pred CCCCCCCCeEEEEeCCCC
Q psy10286 705 YDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~ 722 (748)
. ...|..+|..++
T Consensus 264 ~-----~~~V~~~~~~~G 276 (349)
T 3v64_C 264 H-----TKSINSANKFTG 276 (349)
T ss_dssp T-----TTEEEEEETTTC
T ss_pred C-----CCeEEEEEccCC
Confidence 2 245777775443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=93.82 E-value=1.9 Score=44.55 Aligned_cols=174 Identities=8% Similarity=-0.020 Sum_probs=94.4
Q ss_pred ceEEEEeCCCCceEEccCCC-cccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcc-eeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMS-MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRS-AVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~-~~~~~ 552 (748)
..+..||..+.+....-... ....-.+++.. ++.+++.|+.+ ..+..||..+.............. -.+++
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 170 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR-----GATTLRDFSGSVIQVFAKTDSWDYWYCCVD 170 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-----TEEEEEETTSCEEEEEECCCCSSCCEEEEE
T ss_pred CeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-----CEEEEEECCCCceEEEeccCCCCCCeEEEE
Confidence 46888898887766554332 22222334443 34677777644 468889998877665543322111 22222
Q ss_pred EE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCE-EEEEccCCCCcccCeEEEEECCC--
Q psy10286 553 AL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSY-VYALGGHDGLSIFDSVERYDPKT-- 627 (748)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~~~~yd~~~-- 627 (748)
.. ++..++.|+.+ ..+..||.....-..+..-. ..-.+++.. ++. +++.|+.++ .+..||..+
T Consensus 171 ~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~ 238 (383)
T 3ei3_B 171 VSVSRQMLATGDST-----GRLLLLGLDGHEIFKEKLHK--AKVTHAEFNPRCDWLMATSSVDA-----TVKLWDLRNIK 238 (383)
T ss_dssp EETTTTEEEEEETT-----SEEEEEETTSCEEEEEECSS--SCEEEEEECSSCTTEEEEEETTS-----EEEEEEGGGCC
T ss_pred ECCCCCEEEEECCC-----CCEEEEECCCCEEEEeccCC--CcEEEEEECCCCCCEEEEEeCCC-----EEEEEeCCCCC
Confidence 22 66777777754 47888998654433332111 111222222 344 777777643 688888876
Q ss_pred --CcEEEccCCCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCC
Q psy10286 628 --DEWTSVKPMLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 628 --~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
....... .... ....+.+ ++..++.|+.+ ..+.+||..+.
T Consensus 239 ~~~~~~~~~--~~~~-~v~~~~~s~~~~~~l~~~~~d-----~~i~iwd~~~~ 283 (383)
T 3ei3_B 239 DKNSYIAEM--PHEK-PVNAAYFNPTDSTKLLTTDQR-----NEIRVYSSYDW 283 (383)
T ss_dssp STTCEEEEE--ECSS-CEEEEEECTTTSCEEEEEESS-----SEEEEEETTBT
T ss_pred cccceEEEe--cCCC-ceEEEEEcCCCCCEEEEEcCC-----CcEEEEECCCC
Confidence 3332221 1111 2222222 56677777754 47888887654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=93.70 E-value=7.2 Score=44.59 Aligned_cols=240 Identities=15% Similarity=0.061 Sum_probs=119.9
Q ss_pred ceEEEEeCC---CCceEEccCCCc---cc-ceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcc
Q psy10286 477 STVEVFDPL---VGRWQMAEAMSM---LR-SRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRS 547 (748)
Q Consensus 477 ~~~~~yd~~---~~~W~~~~~~~~---~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~ 547 (748)
..+|+.+.. .+.|+.+-+... .. .......+ +|+..+++...++.....++++|..+++..... .+....
T Consensus 133 ~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~ 211 (741)
T 1yr2_A 133 SQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKF 211 (741)
T ss_dssp CEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEES
T ss_pred EEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCcee
Confidence 456777765 566766532221 11 11122222 666555554333323357999999998875431 111110
Q ss_pred eeEEEEE-CCEEEEEeCCCCC---------CCCceEEEEeCCCCeE--EEccCCCC-CCcceEEEE-ECCE-EEEEccCC
Q psy10286 548 AVGAAAL-NDKLYVCGGYDGV---------SSLNTVECYEPDKDQW--RIVKSMQK-HRSAGGVIA-FDSY-VYALGGHD 612 (748)
Q Consensus 548 ~~~~~~~-~~~iyv~GG~~~~---------~~~~~~~~yd~~~~~W--~~~~~~~~-~r~~~~~~~-~~~~-iyv~GG~~ 612 (748)
.+.+.. ++.|| ++..++. .....++.++..+..- ..+-..+. +........ -+|+ |++... +
T Consensus 212 -~~~~wspD~~l~-~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~-~ 288 (741)
T 1yr2_A 212 -SGLAWLGNDALL-YSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSS-E 288 (741)
T ss_dssp -CCCEESTTSEEE-EEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE-C
T ss_pred -ccEEEECCCEEE-EEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEE-c
Confidence 112222 43344 3333221 1245688888766541 12211111 222222222 2554 444443 2
Q ss_pred CCcccCeEEEEECCCC--c-EEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCC--CcEEEccCCCCCC
Q psy10286 613 GLSIFDSVERYDPKTD--E-WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPIT--DEWKMIASMNVMR 687 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~--~-W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p~~r 687 (748)
+....+.++.+|..+. . |..+........ ......++.||+....+ .....++.+|..+ ..|+.+-+-...
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~~~dg~~l~~~s~~~--~~~~~l~~~d~~~~~~~~~~l~~~~~~- 364 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFVDGVGDQLWFVSGDG--APLKKIVRVDLSGSTPRFDTVVPESKD- 364 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEEEEETTEEEEEECTT--CTTCEEEEEECSSSSCEEEEEECCCSS-
T ss_pred cCCCcceEEEEECCCCCCcccEEecCCCCceE-EEEeccCCEEEEEECCC--CCCCEEEEEeCCCCccccEEEecCCCC-
Confidence 2223568999998877 6 877753322221 22234467787776432 2246799999887 579887432211
Q ss_pred cceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 688 SRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 688 ~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.-..+...++++++....++. ..++++|+..+.-+.+
T Consensus 365 ~l~~~~~~~~~lv~~~~~dg~---~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 365 NLESVGIAGNRLFASYIHDAK---SQVLAFDLDGKPAGAV 401 (741)
T ss_dssp EEEEEEEEBTEEEEEEEETTE---EEEEEEETTSCEEEEC
T ss_pred eEEEEEEECCEEEEEEEECCE---EEEEEEeCCCCceeec
Confidence 112334448888887654432 4678888755544433
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=93.64 E-value=4.4 Score=41.05 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=62.9
Q ss_pred CCCccceEEEEeCCCCceEE-ccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCccee
Q psy10286 472 AGDSLSTVEVFDPLVGRWQM-AEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAV 549 (748)
Q Consensus 472 ~g~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 549 (748)
.|..-..+..+|..+++... +..- ...-.+++.. ++..++.||.+ ..+..||.....-............-
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~v 165 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAE-----REIKLWNILGECKFSSAEKENHSDWV 165 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECC--CSCEEEEEECSSTTEEEEEETT-----SCEEEEESSSCEEEECCTTTSCSSCE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCC--CCcEEEEEECCCCCEEEEEcCC-----CEEEEEeccCCceeeeecccCCCcee
Confidence 33334578889988776432 2111 1111222222 56666777754 35777887654332222211111111
Q ss_pred EEEEE--CC----------EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcc
Q psy10286 550 GAAAL--ND----------KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSI 616 (748)
Q Consensus 550 ~~~~~--~~----------~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~ 616 (748)
.++.. ++ ..++.||.+ ..+..||.....-..... ....-.+++. -+++.++.||.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~--h~~~v~~~~~s~~g~~l~sgs~dg--- 235 (343)
T 2xzm_R 166 SCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTFKA--HESNVNHLSISPNGKYIATGGKDK--- 235 (343)
T ss_dssp EEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTC---
T ss_pred eeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEEcC--ccccceEEEECCCCCEEEEEcCCC---
Confidence 22222 11 456667654 357777743321111111 0111112222 2667777777643
Q ss_pred cCeEEEEECC
Q psy10286 617 FDSVERYDPK 626 (748)
Q Consensus 617 ~~~~~~yd~~ 626 (748)
.+..||..
T Consensus 236 --~v~iwd~~ 243 (343)
T 2xzm_R 236 --KLLIWDIL 243 (343)
T ss_dssp --EEEEEESS
T ss_pred --eEEEEECC
Confidence 57788874
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.64 E-value=5.1 Score=40.54 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=77.6
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEE--
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWT-- 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-- 631 (748)
++..++.|+.+ ..+..||..+.+-...........-.+++.. ++.+++.|+.++ .+..||..+.+-.
T Consensus 138 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg-----~i~iwd~~~~~~~~~ 207 (343)
T 3lrv_A 138 NTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDG-----ILDVYNLSSPDQASS 207 (343)
T ss_dssp -CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTS-----CEEEEESSCTTSCCE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCC-----EEEEEECCCCCCCcc
Confidence 56677778755 3678899888775433322222122233333 678888888754 6889998876532
Q ss_pred EccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEE-EccCCC---CCCcceEEEEE-CCEEEEEeC
Q psy10286 632 SVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWK-MIASMN---VMRSRVALVAN-MGKLWAIGG 704 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p---~~r~~~~~~~~-~~~l~v~GG 704 (748)
.+.. . .......+.+ ++..++.|+ + +.+.+||..+.+-. .+..+. .+....+++.. +++.++.|+
T Consensus 208 ~~~~-~-h~~~v~~l~fs~~g~~l~s~~-~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s 279 (343)
T 3lrv_A 208 RFPV-D-EEAKIKEVKFADNGYWMVVEC-D-----QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYS 279 (343)
T ss_dssp ECCC-C-TTSCEEEEEECTTSSEEEEEE-S-----SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEE
T ss_pred EEec-c-CCCCEEEEEEeCCCCEEEEEe-C-----CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEec
Confidence 2211 0 1122223333 566777776 2 26889998765311 111111 01111122222 566666654
Q ss_pred CCCCCCCCeEEEEe--CCCCceEe
Q psy10286 705 YDGVSNLPTVEVYD--PSTDSWAF 726 (748)
Q Consensus 705 ~~~~~~~~~v~~yd--~~~~~W~~ 726 (748)
..+ ..+.+|+ .....|..
T Consensus 280 ~~d----~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 280 NES----NSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp TTT----TEEEEEEECTTTCSEEE
T ss_pred CCC----CcEEEEEEcccccceEe
Confidence 311 2455554 46678986
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.63 E-value=3.7 Score=46.60 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=72.7
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
-++.++.||+.+. ...++.+|..+.+ |+.-...+.. ....+.++.+++||+... -..+
T Consensus 66 P~v~~g~vyv~~~------~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------dg~l 133 (689)
T 1yiq_A 66 PIVVDGVMYTTGP------FSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------DGRL 133 (689)
T ss_dssp CEEETTEEEEECG------GGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred CEEECCEEEEEcC------CCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------CCEE
Confidence 3457999998754 2468999987765 9875443311 112344667899988653 2469
Q ss_pred EEEECCCCc--EEEccC-CCC--CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEc
Q psy10286 621 ERYDPKTDE--WTSVKP-MLT--KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMI 680 (748)
Q Consensus 621 ~~yd~~~~~--W~~~~~-~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (748)
+.+|..+.+ |+.-.. -+. .....+.++.++.+|+-.+.........++.||.++.+ |+.-
T Consensus 134 ~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 134 EAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp EEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 999998774 876542 111 12223345678888774332111234589999998876 8753
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=13 Score=42.68 Aligned_cols=213 Identities=14% Similarity=0.067 Sum_probs=118.1
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCC----e-EEEcc-CCCCCcce
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRR----V-WNKVS-PMCFKRSA 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~----~-W~~~~-~~~~~r~~ 548 (748)
..+..++.....+..+... .+.-.++++. +++||+.-.. ...++++++... . ...+. .+..+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~~--~~~~~gl~~d~~~~~lY~sD~~-----~~~I~~~~l~g~~~~~~~~~vi~~~l~~P--- 473 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQAP--- 473 (791)
T ss_dssp SSEEEECTTSCCCEEEECS--CSSEEEEEEETTTTEEEEEETT-----TTEEEEEEC--------CEEEECSSCSCC---
T ss_pred cceeEeeccCCcceeeecC--CCceEEEeecccCCeeEEeecc-----ceeEEEEeccCCCCCcceeEEEecCCCCc---
Confidence 3566667766666555322 2233444544 6889987642 256888887642 2 22232 22222
Q ss_pred eEEEE--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEE
Q psy10286 549 VGAAA--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 549 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.++++ .+++||+.-. ....++++++....-+.+. .+..|+ ++++. ++.||+.--.. ...|++
T Consensus 474 ~GLAvD~~~~~LY~tD~-----~~~~I~v~~ldG~~~~~l~~~~l~~P~---gIaVDp~~g~LYwtD~g~----~~~I~~ 541 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----PAKIKK 541 (791)
T ss_dssp CEEEEETTTTEEEEEET-----TTTEEEEEETTSSSEEEEEECTTCCEE---EEEEETTTTEEEEEECSS----SCEEEE
T ss_pred ceeeeeecCCcEEEEec-----CCCeEEEEeCCCCeEEEEEeCCCCCcc---eEEEecCCCCEEEecCCC----CCeEEE
Confidence 23444 3679999854 2357899998876655543 233332 44443 68999875211 257999
Q ss_pred EECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCC-CCCCcceEEEEECCEE
Q psy10286 623 YDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM-NVMRSRVALVANMGKL 699 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~l 699 (748)
+++....-..+..-.. ..-.++++- +++||+.-.. .+.|+.+|+....=..+..- ..-....++++.+++|
T Consensus 542 ~~~dG~~~~~lv~~~l-~~P~GLavD~~~~~LYwaD~~-----~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~l 615 (791)
T 3m0c_C 542 GGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 615 (791)
T ss_dssp EETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEE
T ss_pred EecCCCceEEEEeCCC-CCceEEEEecCCCeEEEEeCC-----CCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEE
Confidence 9987665444422111 111233433 6899998642 36899999876443333211 1112335677789999
Q ss_pred EEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 700 WAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
|+.-. ....|+++|..++
T Consensus 616 YwtD~-----~~~~I~~~dk~tG 633 (791)
T 3m0c_C 616 FWTDI-----INEAIFSANRLTG 633 (791)
T ss_dssp EEEET-----TTTEEEEEETTTC
T ss_pred EEEEC-----CCCEEEEEeCCCC
Confidence 99853 2345666665443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=93.46 E-value=1.8 Score=43.35 Aligned_cols=196 Identities=15% Similarity=0.081 Sum_probs=99.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.||+.+.. ...+++|++ +.+...... +.. ...+.+.- +|++|+.... ...+.+||+. ++.+.+
T Consensus 56 g~~l~~~d~~-----~~~i~~~~~-~g~~~~~~~-~~~-~~~gl~~d~dG~l~v~~~~-----~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 56 QRTLVWSDLV-----GRRVLGWRE-DGTVDVLLD-ATA-FTNGNAVDAQQRLVHCEHG-----RRAITRSDAD-GQAHLL 121 (305)
T ss_dssp GTEEEEEETT-----TTEEEEEET-TSCEEEEEE-SCS-CEEEEEECTTSCEEEEETT-----TTEEEEECTT-SCEEEE
T ss_pred CCEEEEEECC-----CCEEEEEeC-CCCEEEEeC-CCC-ccceeeECCCCCEEEEECC-----CCEEEEECCC-CCEEEE
Confidence 3457777643 246888988 444433322 111 12233333 6788876431 1468899986 666555
Q ss_pred cCCC-CC---CcceEEEEECCEEEEE----ccCCC--------CcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-C
Q psy10286 587 KSMQ-KH---RSAGGVIAFDSYVYAL----GGHDG--------LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-N 649 (748)
Q Consensus 587 ~~~~-~~---r~~~~~~~~~~~iyv~----GG~~~--------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~ 649 (748)
.... .. +....++.-+|.+|+. |-... ......+++||+.+.+++.+. ... ...+.+.. +
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~-~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD-HPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES-SEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC-CCcceEEcCC
Confidence 3221 11 1112223337889985 33211 011357999999888877664 111 11233333 3
Q ss_pred C-EEEEEeccCCCccccEEEEEeCCCCcEEE---ccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 650 N-KIYVCGGYDGAIFLQSVEMYDPITDEWKM---IASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 650 ~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~---~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
+ .+|+..........+.+++||...+.... +...+......-++--+|+||+..+ ..|.+||+......
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-------~gv~~~~~~g~~~~ 271 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-------TGVCVFDSDGQLLG 271 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-------SEEEEECTTSCEEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecC-------CcEEEECCCCCEEE
Confidence 4 57777543211123579999987654221 1111111111112223577777642 25899999766555
Q ss_pred ec
Q psy10286 726 FV 727 (748)
Q Consensus 726 ~~ 727 (748)
.+
T Consensus 272 ~~ 273 (305)
T 3dr2_A 272 HI 273 (305)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=93.44 E-value=4.2 Score=41.13 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=58.0
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+.+++.|+.+ ..+..||..+.+-...-.- ....-.+++.. ++.+++.|+.+ ..+..||..+.+-...
T Consensus 85 ~~~l~~~~~d-----g~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~ 153 (366)
T 3k26_A 85 HPLLAVAGSR-----GIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDTLVAI 153 (366)
T ss_dssp CEEEEEEETT-----CEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTEEEEE
T ss_pred CCEEEEecCC-----CEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCeEEEE
Confidence 5677778754 3688899887653221110 11112223332 56777888754 4688999988764333
Q ss_pred c-CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 587 K-SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 587 ~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
- .+.........+.+ ++..++.||.++ .+..||..+.+
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~ 194 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEKIMSCGMDH-----SLKLWRINSKR 194 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEESCSHH
T ss_pred ecccccccCceeEEEECCCCCEEEEecCCC-----CEEEEECCCCc
Confidence 2 11222222222222 466677777643 58888887653
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=93.19 E-value=9.5 Score=39.93 Aligned_cols=193 Identities=16% Similarity=0.118 Sum_probs=106.2
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCe-EE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQ-WR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~ 584 (748)
++.||+.... ...+.++|+.+++-..+.... ...+ .+.. ++.+|+.....+ ..++.+|+.++. ..
T Consensus 141 ~g~lyv~d~~-----~~~I~~id~~~g~~~~~~~~~--~~~~-ia~~~~g~~l~~~d~~~~----~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 141 NNTVLAYQRD-----DPRVRLISVDDNKVTTVHPGF--KGGK-PAVTKDKQRVYSIGWEGT----HTVYVYMKASGWAPT 208 (409)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEEETC--CBCB-CEECTTSSEEEEEBSSTT----CEEEEEEGGGTTCEE
T ss_pred CCCEEEEecC-----CCcEEEEECCCCEEEEeeccC--CCCc-eeEecCCCcEEEEecCCC----ceEEEEEcCCCceeE
Confidence 6789998752 357999999987765543321 1122 3332 446776644221 278999987543 23
Q ss_pred EccCCC--CCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEcc---CCCCCCcc-e-eEEEE--CCEEE
Q psy10286 585 IVKSMQ--KHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK---PMLTKRCR-L-GVAAL--NNKIY 653 (748)
Q Consensus 585 ~~~~~~--~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~-~-~~~~~--~~~i~ 653 (748)
.+...+ ....-+++++. ++.||+..+ ...+++||+.+.....+. ........ . +++.. ++.+|
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDS------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECT------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEEC------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 331111 11222334443 689999432 247999999988765552 11111222 1 44444 58999
Q ss_pred EEeccCCCccccEEEEEeCCCCcEEEccCCCC----------CCc--ceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 654 VCGGYDGAIFLQSVEMYDPITDEWKMIASMNV----------MRS--RVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~r~--~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+.... .+.|++||+....-...+.... .+. -.+++.. +++|||.-.. ....|.++|+.
T Consensus 283 v~d~~-----~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~----~~~~I~~~~~~ 353 (409)
T 3hrp_A 283 MSDQN-----LSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGF----KGYCLRKLDIL 353 (409)
T ss_dssp EEETT-----TTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETT----TTCEEEEEETT
T ss_pred EEeCC-----CCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCC----CCCEEEEEECC
Confidence 98643 3579999987653222222100 111 1233333 5779988531 12479999976
Q ss_pred CCceEec
Q psy10286 721 TDSWAFV 727 (748)
Q Consensus 721 ~~~W~~~ 727 (748)
++....+
T Consensus 354 ~G~v~~~ 360 (409)
T 3hrp_A 354 DGYVSTV 360 (409)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 7665544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.98 E-value=5.2 Score=45.28 Aligned_cols=187 Identities=14% Similarity=0.205 Sum_probs=95.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.+.+.||.+ ..+..||..+.+-...-.- ....-.+++.. ++..++.||.+ ..+..||.....-..+
T Consensus 441 ~g~~l~sgs~D-----g~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~ 509 (694)
T 3dm0_A 441 DGQFALSGSWD-----GELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGECKYTI 509 (694)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEE
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCcceee
Confidence 66777778754 4688899888753321110 11111222222 56666777755 3577788755432222
Q ss_pred c-CCCCCCcceEEEEE--CC--EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccC
Q psy10286 587 K-SMQKHRSAGGVIAF--DS--YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYD 659 (748)
Q Consensus 587 ~-~~~~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 659 (748)
. .....+....++.+ ++ ..++.|+.++ .+..||..+.+-... +.........+.+ ++++++.||.+
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~-----~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK-----TVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTS-----CEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC-----eEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 2 11112222223333 22 4566666643 588899877654322 1111122222333 67788888865
Q ss_pred CCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 660 GAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 660 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
+ .|.+||..+.+-. ..+.....-.+++...+..++.+|.+ ..+.+||..++.-
T Consensus 583 g-----~i~iwd~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 583 G-----VVLLWDLAEGKKL--YSLEANSVIHALCFSPNRYWLCAATE-----HGIKIWDLESKSI 635 (694)
T ss_dssp S-----BCEEEETTTTEEE--ECCBCSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEE
T ss_pred C-----eEEEEECCCCceE--EEecCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEECCCCCC
Confidence 3 5788898776532 22222222333444433334444422 3588999887654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=92.98 E-value=10 Score=39.62 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=120.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCC-----eEEEcc-CCCCCcce
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRR-----VWNKVS-PMCFKRSA 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~-----~W~~~~-~~~~~r~~ 548 (748)
..+..+|+....+..+.+ ..+.-.++++. ++.||+.--. ...++++++... ....+. .+. .-
T Consensus 92 ~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD~~-----~~~I~~~~~~g~~~~~~~~~~~~~~~~---~p 161 (400)
T 3p5b_L 92 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLS-----QRMICSTQLDRAHGVSSYDTVISRDIQ---AP 161 (400)
T ss_dssp TEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEETT-----TTEEEEEEC------CCCEEEECSSCS---CE
T ss_pred ceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEecC-----CCeEEEEEcccCCCCCcceEEEeCCCC---Cc
Confidence 567888888877766532 22333455554 6899997532 256888888752 222222 121 22
Q ss_pred eEEEE--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEE
Q psy10286 549 VGAAA--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 549 ~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.+.++ .++.||+.-.. ...++++|+....-..+. .+..|+ ++++. ++.||+.-... ...+++
T Consensus 162 ~glavD~~~~~lY~~d~~-----~~~I~~~~~~g~~~~~l~~~~~~~P~---~iavdp~~g~ly~td~~~----~~~I~~ 229 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKTLFRENGSKPR---AIVVDPVHGFMYWTDWGT----PAKIKK 229 (400)
T ss_dssp EEEEEETTTTEEEEEETT-----TTEEEEECTTTCSEEEEEECSSCCEE---EEEEETTTTEEEEEECSS----SCCEEE
T ss_pred ccEEEEecCCceEEEECC-----CCeEEEEeCCCCceEEEEeCCCCCcc---eEEEecccCeEEEEeCCC----CCEEEE
Confidence 34444 37899998542 357889998876654443 232232 34443 68999875211 246999
Q ss_pred EECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-CCCcceEEEEECCEE
Q psy10286 623 YDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKL 699 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~l 699 (748)
+++....-+.+..-.. ..-.++++- +++||+.-.. .+.|+.+|.....-..+...+ .-..-.++++.++.|
T Consensus 230 ~~~dG~~~~~~~~~~l-~~P~glavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~l 303 (400)
T 3p5b_L 230 GGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKV 303 (400)
T ss_dssp EETTSCSCEEEECSSC-SCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEE
T ss_pred EeCCCCccEEEEECCC-CceEEEEEEeCCCEEEEEECC-----CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEE
Confidence 9987544333211111 112334443 6899998643 468999998764433332211 112235667789999
Q ss_pred EEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 700 WAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
|+.-- ....|+++|+.++
T Consensus 304 ywtd~-----~~~~V~~~~~~~G 321 (400)
T 3p5b_L 304 FWTDI-----INEAIFSANRLTG 321 (400)
T ss_dssp EEEES-----SSCSEEEEESSSC
T ss_pred EEecC-----CCCeEEEEEcCCC
Confidence 99852 1235777775443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.97 E-value=1.2 Score=45.23 Aligned_cols=214 Identities=11% Similarity=0.116 Sum_probs=106.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-C---CEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-K---NRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVG 550 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~ 550 (748)
..+..||..+++............-.+++.. + +.+++.|+.+ ..+..||..+.+ -..+..-..+ -.+
T Consensus 44 ~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~--v~~ 116 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG-----GNLHIWNLEAPEMPVYSVKGHKEI--INA 116 (357)
T ss_dssp EEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT-----SCEEEECTTSCSSCSEEECCCSSC--EEE
T ss_pred cEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC-----CeEEEEeCCCCCccEEEEEecccc--eEE
Confidence 5688888888776544322222222222222 2 4777777754 357888887654 1111111111 111
Q ss_pred EEE-------ECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCC--CCcceEEEE-----ECCEEEEEccCCCC
Q psy10286 551 AAA-------LNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQK--HRSAGGVIA-----FDSYVYALGGHDGL 614 (748)
Q Consensus 551 ~~~-------~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~-----~~~~iyv~GG~~~~ 614 (748)
+.. -++..++.|+.+ ..+..||..+.. ......... .+.-.+++. -++..++.|+.+
T Consensus 117 ~~~~~~~~~s~~~~~l~~~~~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d-- 189 (357)
T 3i2n_A 117 IDGIGGLGIGEGAPEIVTGSRD-----GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN-- 189 (357)
T ss_dssp EEEESGGGCC-CCCEEEEEETT-----SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT--
T ss_pred EeeccccccCCCccEEEEEeCC-----CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC--
Confidence 211 256667777754 367888887754 233322111 112222221 366777777764
Q ss_pred cccCeEEEEECCCCcEEEccCCCCCCcceeEEEE----CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-----C
Q psy10286 615 SIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL----NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-----V 685 (748)
Q Consensus 615 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-----~ 685 (748)
..+..||..+.+-...... ...-.+++.. ++..++.|+.+ ..+.+||..+.+ .+..++ .
T Consensus 190 ---~~i~i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~--~~~~~~~~~~~~ 257 (357)
T 3i2n_A 190 ---GDIKLFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLE-----GKFHVFDMRTQH--PTKGFASVSEKA 257 (357)
T ss_dssp ---SEEEEEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEEST-----TEEEEEEEEEEE--TTTEEEEEEEEC
T ss_pred ---CeEEEEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCC-----CeEEEEeCcCCC--cccceeeeccCC
Confidence 3689999988764333221 1222233332 46677777654 367778765421 111111 1
Q ss_pred CC-cceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 686 MR-SRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 686 ~r-~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
.. .-.++... ++. +++.||.++ .+.+||..+
T Consensus 258 ~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~ 291 (357)
T 3i2n_A 258 HKSTVWQVRHLPQNRELFLTAGGAG-----GLHLWKYEY 291 (357)
T ss_dssp CSSCEEEEEEETTEEEEEEEEETTS-----EEEEEEEEC
T ss_pred CcCCEEEEEECCCCCcEEEEEeCCC-----cEEEeecCC
Confidence 11 12223333 455 777777543 577777654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=92.91 E-value=4.9 Score=45.35 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=72.3
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
-++.++.||+.... ..++.+|..+.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 62 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------dg~l 129 (668)
T 1kv9_A 62 PLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGRL 129 (668)
T ss_dssp CEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSEE
T ss_pred CEEECCEEEEECCC------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------CCEE
Confidence 34679999987652 468899987764 8876443211 112345667899988643 2469
Q ss_pred EEEECCCCc--EEEccCCCC--CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEE
Q psy10286 621 ERYDPKTDE--WTSVKPMLT--KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 621 ~~yd~~~~~--W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (748)
+.+|..+.+ |+.-..-+. .....+.++.++.+|+..+.........++.||.++.+ |+.
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 999988774 876532111 12223345668888774332111234589999998765 875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=92.90 E-value=2 Score=47.61 Aligned_cols=221 Identities=10% Similarity=-0.043 Sum_probs=110.8
Q ss_pred ceEEEEeC--CCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDP--LVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+|..+. .... ..+...+..+ ..+...-++.++++.+..+ ....||..+++-..+...+. ...+..-
T Consensus 90 ~~l~~~~~~~~g~~-~~l~~~~~~~-~~~~s~dg~~~~~~s~~~~-----~~~l~d~~~g~~~~l~~~~~---~~~~~sp 159 (582)
T 3o4h_A 90 HALFKVNTSRPGEE-QRLEAVKPMR-ILSGVDTGEAVVFTGATED-----RVALYALDGGGLRELARLPG---FGFVSDI 159 (582)
T ss_dssp EEEEEEETTSTTCC-EECTTSCSBE-EEEEEECSSCEEEEEECSS-----CEEEEEEETTEEEEEEEESS---CEEEEEE
T ss_pred eEEEEEeccCCCcc-ccccCCCCce-eeeeCCCCCeEEEEecCCC-----CceEEEccCCcEEEeecCCC---ceEEECC
Confidence 45666776 3332 2443333222 2222222445555544322 23477888887766654332 2223334
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+|+..++++.++. ....++.+|+.+++++.+..-+.. ....+.. +|+.++.+..++ ...++.+|..+++...+
T Consensus 160 DG~~la~~~~~~~-~~~~i~~~d~~~g~~~~l~~~~~~--~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~~~ 233 (582)
T 3o4h_A 160 RGDLIAGLGFFGG-GRVSLFTSNLSSGGLRVFDSGEGS--FSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVEDL 233 (582)
T ss_dssp ETTEEEEEEEEET-TEEEEEEEETTTCCCEEECCSSCE--EEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEEEC
T ss_pred CCCEEEEEEEcCC-CCeEEEEEcCCCCCceEeecCCCc--cccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEEEc
Confidence 6666665554321 124699999999888766432211 1222222 555444443322 24799999999888733
Q ss_pred cCCCCCCccee-----E--EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCC
Q psy10286 634 KPMLTKRCRLG-----V--AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYD 706 (748)
Q Consensus 634 ~~~p~~r~~~~-----~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 706 (748)
......-.... . ..-++++++.+..++ .+.+|+. .+... .+.. ...++...++++++.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g-----~~~l~~~--g~~~~---~~~~-~v~~~~~sdg~~l~~~s~~ 302 (582)
T 3o4h_A 234 ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREG-----RSAVFID--GERVE---APQG-NHGRVVLWRGKLVTSHTSL 302 (582)
T ss_dssp CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETT-----EEEEEET--TEEEC---CCSS-EEEEEEEETTEEEEEEEET
T ss_pred cCCCcChhhhhhccccceeEcCCCcEEEEEEcCC-----cEEEEEE--CCeec---cCCC-ceEEEEecCCEEEEEEcCC
Confidence 22111000000 0 223667777776543 5667776 44333 2221 1122222388888776643
Q ss_pred CCCCCCeEEEEeCCCCceEec
Q psy10286 707 GVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.. ...++.+|..+ +.+.+
T Consensus 303 ~~--p~~l~~~d~~~-~~~~l 320 (582)
T 3o4h_A 303 ST--PPRIVSLPSGE-PLLEG 320 (582)
T ss_dssp TE--EEEEEEETTCC-EEECC
T ss_pred CC--CCeEEEEcCCC-ceEEE
Confidence 22 24678888765 44443
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=92.79 E-value=3 Score=43.09 Aligned_cols=219 Identities=13% Similarity=0.144 Sum_probs=105.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC--cceeE----
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK--RSAVG---- 550 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~--r~~~~---- 550 (748)
..+..+|..+.+-...-......-...+..-++...+.||.++ .+..||..+..-.. ..++.. ..+|.
T Consensus 88 ~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~-----~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~ 161 (380)
T 3iz6_a 88 GRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDS-----ACSIFNLSSQADRD-GNMPVSRVLTGHKGYAS 161 (380)
T ss_dssp SEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSS-----CCEEEECCCCSSCC-CSSTTCCBCCCCSSCCC
T ss_pred CeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCC-----cEEEEECCCCcccc-CCccceeeccCCCcceE
Confidence 4677888877654322111111111111122667778888653 45566665432110 111111 11111
Q ss_pred -EEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc--CCCCCCcc--eEEEE--ECCEEEEEccCCCCcccCeEE
Q psy10286 551 -AAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK--SMQKHRSA--GGVIA--FDSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 551 -~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~--~~~~~--~~~~iyv~GG~~~~~~~~~~~ 621 (748)
+... ++..++.|+.+ ..+..||..++.-...- ..+..... .++.. .++.+++.||.++ .+.
T Consensus 162 ~~~~~~~~~~~l~s~s~D-----~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~ 231 (380)
T 3iz6_a 162 SCQYVPDQETRLITGSGD-----QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVR 231 (380)
T ss_dssp CCBCCSSSSSCEEEECTT-----SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEE
T ss_pred EEEEecCCCCEEEEECCC-----CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEE
Confidence 1111 23445566644 46788898887643322 22222111 12222 2677888888754 578
Q ss_pred EEECCCC--cEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEc-cCCCCC----Cc-ceE
Q psy10286 622 RYDPKTD--EWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI-ASMNVM----RS-RVA 691 (748)
Q Consensus 622 ~yd~~~~--~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~----r~-~~~ 691 (748)
.||.... .-..+.. .......+.+ ++..++.|+.++ .+.+||..+..-... ...+.. .. -.+
T Consensus 232 ~wd~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 303 (380)
T 3iz6_a 232 LWDLRITSRAVRTYHG---HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDMRTGHQLQVYNREPDRNDNELPIVTS 303 (380)
T ss_dssp EEETTTTCCCCEEECC---CSSCCCEEEECTTSSEEEEECSSS-----CEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred EEECCCCCcceEEECC---cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEECCCCcEEEEecccccccccccCceEE
Confidence 8887632 1111111 1111122222 567788887653 688899887654332 111110 11 122
Q ss_pred EE-EECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 692 LV-ANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 692 ~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
++ ..++++++.|+.++ .+.+||..+.+-
T Consensus 304 ~~~s~~g~~l~~g~~dg-----~i~vwd~~~~~~ 332 (380)
T 3iz6_a 304 VAFSISGRLLFAGYSNG-----DCYVWDTLLAEM 332 (380)
T ss_dssp EEECSSSSEEEEECTTS-----CEEEEETTTCCE
T ss_pred EEECCCCCEEEEEECCC-----CEEEEECCCCce
Confidence 22 23677888877543 589999877654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=92.71 E-value=1.3 Score=44.50 Aligned_cols=198 Identities=13% Similarity=0.174 Sum_probs=95.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCC-eEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRR-VWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+.+|| .+++-.....++.. ...+.+.. ++.||+... . +++||+... .|.... +... ....+..
T Consensus 40 ~~l~~~d-~~g~~~~~~~~~~~-~~~~~~~~~~g~l~v~t~-------~-l~~~d~~g~~~~~~~~--~~~~-~~~~~~~ 106 (330)
T 3hxj_A 40 KNLYAIN-TDGSVKWFFKSGEI-IECRPSIGKDGTIYFGSD-------K-VYAINPDGTEKWRFDT--KKAI-VSDFTIF 106 (330)
T ss_dssp TTTEEEC-TTSCEEESSCGGGE-EEECCEETTTTEECCSSC-------E-EEEECCCGGGGGGSCC--------CCEEEE
T ss_pred CEEEEEC-CCCcEEEEEecCCC-cccceEEecCCcEEEecC-------c-EEEECCCCcEEEEEEC--CCCc-ccCceEE
Confidence 4578899 66653222222211 11222332 677776221 2 889997432 243221 1111 1122334
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCC-CCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCC-cEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPD-KDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTD-EWT 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~ 631 (748)
++.+|+... + ..+++||+. ...|+...+.+ . ..+.+.. ++.+|+... ...+++||+... .|.
T Consensus 107 ~~~l~v~t~-~-----~~l~~~d~~g~~~~~~~~~~~--~-~~~~~~~~~g~l~vgt~------~~~l~~~d~~g~~~~~ 171 (330)
T 3hxj_A 107 EDILYVTSM-D-----GHLYAINTDGTEKWRFKTKKA--I-YATPIVSEDGTIYVGSN------DNYLYAINPDGTEKWR 171 (330)
T ss_dssp TTEEEEECT-T-----SEEEEECTTSCEEEEEECSSC--C-CSCCEECTTSCEEEECT------TSEEEEECTTSCEEEE
T ss_pred CCEEEEEec-C-----CEEEEEcCCCCEEEEEcCCCc--e-eeeeEEcCCCEEEEEcC------CCEEEEECCCCCEeEE
Confidence 888887432 1 468899988 34576653322 1 2222333 677777432 146999999822 365
Q ss_pred EccCCCCCCcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCC-CcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCC
Q psy10286 632 SVKPMLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPIT-DEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGV 708 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~ 708 (748)
.-.. ... ..+.+. -++.||+.. ..+++||... ..|..-... .. ..+.+.. ++.||+...
T Consensus 172 ~~~~--~~~-~~~~~~d~~g~l~v~t--------~~l~~~d~~g~~~~~~~~~~--~~-~~~~~~~~~g~l~v~t~---- 233 (330)
T 3hxj_A 172 FKTN--DAI-TSAASIGKDGTIYFGS--------DKVYAINPDGTEKWNFYAGY--WT-VTRPAISEDGTIYVTSL---- 233 (330)
T ss_dssp EECS--SCC-CSCCEECTTCCEEEES--------SSEEEECTTSCEEEEECCSS--CC-CSCCEECTTSCEEEEET----
T ss_pred EecC--CCc-eeeeEEcCCCEEEEEe--------CEEEEECCCCcEEEEEccCC--cc-eeceEECCCCeEEEEcC----
Confidence 4322 111 122333 366777654 3578888442 346654221 11 1222223 456766531
Q ss_pred CCCCeEEEEeCCCC
Q psy10286 709 SNLPTVEVYDPSTD 722 (748)
Q Consensus 709 ~~~~~v~~yd~~~~ 722 (748)
...+++||+...
T Consensus 234 --~~gl~~~~~~g~ 245 (330)
T 3hxj_A 234 --DGHLYAINPDGT 245 (330)
T ss_dssp --TTEEEEECTTSC
T ss_pred --CCeEEEECCCCC
Confidence 124666665443
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.71 E-value=5.5 Score=40.17 Aligned_cols=184 Identities=9% Similarity=0.052 Sum_probs=92.9
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+..++.|+.+ ..+..||..+........+. ....-.+++.. ++..++.|+.+ ..+..||..+......
T Consensus 54 g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----g~v~iwd~~~~~~~~~ 123 (368)
T 3mmy_A 54 GNFLIAGSWA-----NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD-----KTAKMWDLSSNQAIQI 123 (368)
T ss_dssp SEEEEEEETT-----SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred ceEEEEECCC-----CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC-----CcEEEEEcCCCCceee
Confidence 4777778754 35778887763222211111 11111222222 66667777754 4788999988876554
Q ss_pred cCCCCCCcceEEEE---ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCcc
Q psy10286 587 KSMQKHRSAGGVIA---FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF 663 (748)
Q Consensus 587 ~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 663 (748)
.... ..-.++.. -++.+++.|+.++ .+..||..+.+-.. .+.......+.....+.+++.++
T Consensus 124 ~~~~--~~v~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------ 188 (368)
T 3mmy_A 124 AQHD--APVKTIHWIKAPNYSCVMTGSWDK-----TLKFWDTRSSNPMM--VLQLPERCYCADVIYPMAVVATA------ 188 (368)
T ss_dssp EECS--SCEEEEEEEECSSCEEEEEEETTS-----EEEEECSSCSSCSE--EEECSSCEEEEEEETTEEEEEEG------
T ss_pred cccc--CceEEEEEEeCCCCCEEEEccCCC-----cEEEEECCCCcEEE--EEecCCCceEEEecCCeeEEEeC------
Confidence 3211 11122332 2667788887643 68889987664211 11222233334444565555443
Q ss_pred ccEEEEEeCCCCc--EEEccCCCCCCcceEEEEEC----CEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 664 LQSVEMYDPITDE--WKMIASMNVMRSRVALVANM----GKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 664 ~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~----~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
...+..||..... +..+...............+ ...++.|+.+ ..+.+||..+.
T Consensus 189 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~i~~~~~~ 248 (368)
T 3mmy_A 189 ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE-----GRVAIHYINPP 248 (368)
T ss_dssp GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT-----SEEEEEESSCS
T ss_pred CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC-----CcEEEEecCCC
Confidence 2457778776543 44433222222222222222 2236666643 35777777664
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=92.62 E-value=6.3 Score=37.14 Aligned_cols=144 Identities=13% Similarity=0.152 Sum_probs=81.1
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCe-EE--Ec----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV-WN--KV----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~-W~--~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 573 (748)
|++..++.+|+|=| +.+|+++..... .. .+ +.+|.. -. ++... ++++|+|-| +..
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~~-ID-AA~~~~~~~k~yfFkG-------~~y 98 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEK-ID-AVYEAPQEEKAVFFAG-------NEY 98 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSC-CS-EEEEETTTTEEEEEET-------TEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCCC-cc-EEEEECCCCEEEEEeC-------CEE
Confidence 44556899999977 467777655422 11 22 233422 22 22222 689999988 678
Q ss_pred EEEeCCCCe--E-EEccC--CCCCC-cceEEEE--ECCEEEEEccCCCCcccCeEEEEECCCCcEEE-----cc-C-CCC
Q psy10286 574 ECYEPDKDQ--W-RIVKS--MQKHR-SAGGVIA--FDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----VK-P-MLT 638 (748)
Q Consensus 574 ~~yd~~~~~--W-~~~~~--~~~~r-~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~-~-~p~ 638 (748)
|+||..+-. + +.+.. +|... .--++.. .++++|+|-|. ..|+||..+++-.. +. . +..
T Consensus 99 W~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG~-------~ywr~d~~~~~v~~gyPr~i~~~w~g~ 171 (218)
T 1gen_A 99 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD-------KFWRYNEVKKKMDPGFPKLIADAWNAI 171 (218)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred EEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEECC-------EEEEEECccccccCCCCcchhhccCCC
Confidence 999852100 0 11212 22111 1223333 36899999884 79999988764321 11 0 112
Q ss_pred CCcceeEEEEC--CEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 639 KRCRLGVAALN--NKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 639 ~r~~~~~~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
+..-.++...+ +.+|++-| +..|.||..+..
T Consensus 172 p~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 172 PDNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp CSSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred CCCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 22333444444 89999987 578899876654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.27 E-value=13 Score=39.29 Aligned_cols=236 Identities=9% Similarity=-0.007 Sum_probs=113.6
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCC--CCceeec-cc----ccccceEEecccccccCCCccceEEEEeCCCCceEE--
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPL--VGRWQMA-EE----ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQM-- 491 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~--~~~W~~~-~~----~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~-- 491 (748)
+..+++.|+.+ ..+..||.. ++..... .. ..+....+..++.....|.....++.++..+.....
T Consensus 114 ~~~l~~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~ 187 (450)
T 2vdu_B 114 ESRLIACADSD------KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFT 187 (450)
T ss_dssp SSEEEEEEGGG------TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCC
T ss_pred CCEEEEEECCC------CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccccc
Confidence 33456777653 246777766 4433222 11 111122223333322223333457888876654321
Q ss_pred ccCCCcccc-eeEEEEE-C---CEEEEEccCCCCCCCCeEEEEECCCCeEEEc-cCCCCCcceeEEEEECCEEEEEeCCC
Q psy10286 492 AEAMSMLRS-RVGVAVM-K---NRLYAFGGYNGSERLSTVEEFDPVRRVWNKV-SPMCFKRSAVGAAALNDKLYVCGGYD 565 (748)
Q Consensus 492 ~~~~~~~r~-~~~~~~~-~---~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~ 565 (748)
...+..... -.+++.. + +..++.|+.+ ..+..||..+.+.... ..-....-...+.. +++.++.||.+
T Consensus 188 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d 261 (450)
T 2vdu_B 188 QEPILGHVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGD 261 (450)
T ss_dssp CCCSEECSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESS
T ss_pred ceeeecccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCC
Confidence 111111111 1222222 6 7788888754 3678888776643221 11111111112222 77777777754
Q ss_pred CCCCCceEEEEeCCCCeEEEccCC------------------------CCCCcceEEEEE-CC-EEEEEccCCCCcccCe
Q psy10286 566 GVSSLNTVECYEPDKDQWRIVKSM------------------------QKHRSAGGVIAF-DS-YVYALGGHDGLSIFDS 619 (748)
Q Consensus 566 ~~~~~~~~~~yd~~~~~W~~~~~~------------------------~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~ 619 (748)
..+..||..+.+....-.. .....-..++.. ++ .+++.++.+ ..
T Consensus 262 -----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d-----~~ 331 (450)
T 2vdu_B 262 -----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT-----KC 331 (450)
T ss_dssp -----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTC-----SE
T ss_pred -----CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCC-----Ce
Confidence 4788899888764322111 000111122222 34 444444232 46
Q ss_pred EEEEEC--C-CCcEEEccCCCCCCcceeEEEECCEEEEEeccCCC----ccccEEEEEeCCCCcEE
Q psy10286 620 VERYDP--K-TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA----IFLQSVEMYDPITDEWK 678 (748)
Q Consensus 620 ~~~yd~--~-~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~----~~~~~v~~yd~~~~~W~ 678 (748)
+..||. . ...+..+..+.....-.+++...+.+++..+.... ...-.++.++..++.|.
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred EEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 778877 3 34556555444333334455556777777654321 12237778888888885
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=3.9 Score=45.38 Aligned_cols=120 Identities=14% Similarity=0.200 Sum_probs=70.8
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeC-CCCe--EEEccCCCCC-----C---cceEEEE--ECCE----EEEEccCC
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEP-DKDQ--WRIVKSMQKH-----R---SAGGVIA--FDSY----VYALGGHD 612 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~~~~--W~~~~~~~~~-----r---~~~~~~~--~~~~----iyv~GG~~ 612 (748)
+-++.++.||+.+.. ...++.+|. .+.+ |+.-...+.. + ...+.++ .+++ ||+...
T Consensus 57 tP~v~~g~vyv~~~~-----~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-- 129 (599)
T 1w6s_A 57 APLVVDGKMYIHTSF-----PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-- 129 (599)
T ss_dssp CCEEETTEEEEECST-----TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--
T ss_pred ccEEECCEEEEEeCC-----CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--
Confidence 345569999998652 246899998 6664 9886543321 1 1223455 5777 887543
Q ss_pred CCcccCeEEEEECCCCc--EEEccCCCCC--CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEc
Q psy10286 613 GLSIFDSVERYDPKTDE--WTSVKPMLTK--RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMI 680 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~--W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~ 680 (748)
-..++.+|..+.+ |+.-..-+.. ....+-++.++++|+-++.........++.||.++.+ |+.-
T Consensus 130 ----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 130 ----DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 2469999988775 8754221111 1122335568887764421111123589999998765 8754
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.22 E-value=5 Score=42.13 Aligned_cols=149 Identities=12% Similarity=0.116 Sum_probs=80.2
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++.+++.|+.+ ..+..||..+.+-...-..+.....-.++.+ ++..++.|+.++ .+..||..+.+...
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG-----IIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEcCCccEEE
Confidence 47777888754 4788999887654322111111112222223 677777887753 58899998866533
Q ss_pred ccCCCCCCcceeEEEE-----CCEEEEEeccCCCccccEEEEEeCCCCcEEEc-c-C---------CCC-----------
Q psy10286 633 VKPMLTKRCRLGVAAL-----NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI-A-S---------MNV----------- 685 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~-----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-~-~---------~p~----------- 685 (748)
.-..+....-.+++.. ++.+++.|+.+ ..+.+||..+.+-... . . .|.
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK-----TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCC-----CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 2111111111111111 34566666643 3688899877653221 1 0 000
Q ss_pred ---CCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 686 ---MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 686 ---~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
...-.+++..++++++.||.++ .|.+||..+.+
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d~-----~i~~wd~~~~~ 361 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEATS-----SIVMFSLNELS 361 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGGT-----EEEEEETTCGG
T ss_pred cccCCceEEEEECCceEEEecCCCC-----eEEEEECCCcc
Confidence 0111233444888888888653 68888887754
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=2 Score=45.59 Aligned_cols=147 Identities=11% Similarity=0.079 Sum_probs=84.1
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE--c----cCCCCCcceeEEEE--ECCEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK--V----SPMCFKRSAVGAAA--LNDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~--~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 574 (748)
+++..+|.+|+|-| ..+|+++.....+.. + +.+|... . ++.. .++++|+|-| +.+|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~i-D-Aa~~~~~~g~~~fFKg-------~~~W 330 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGL-E-AAYEFADRDEVRFFKG-------NKYW 330 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSC-C-EEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCCe-e-EEEEEcCCCeEEEEeC-------CEEE
Confidence 55667999999987 457777765544322 2 2344322 1 2222 2789999988 5678
Q ss_pred EEeCCCC--eE-EEcc---CCCCCCcce-EEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE-----Ecc-CCC-C
Q psy10286 575 CYEPDKD--QW-RIVK---SMQKHRSAG-GVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT-----SVK-PML-T 638 (748)
Q Consensus 575 ~yd~~~~--~W-~~~~---~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-----~~~-~~p-~ 638 (748)
+|+..+- .+ ..+. .+|..-..- ++... ++++|+|-|. ..|+||..+.+-. .+. ..| .
T Consensus 331 ~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG~-------~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 331 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN-------KYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCCCC
Confidence 8874320 00 1111 122211112 23333 6899999884 7999998754322 111 111 1
Q ss_pred CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE
Q psy10286 639 KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679 (748)
Q Consensus 639 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (748)
+..--++...++++|++-| +..|+||..+.+-..
T Consensus 404 p~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 404 GHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp CSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 2222344456899999987 688999988776543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.09 E-value=1.1 Score=46.45 Aligned_cols=147 Identities=13% Similarity=0.186 Sum_probs=76.6
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++.+++.||.+ ..+..||..+..-...-..+.+......... ++.+++.|+.++ .+..||..+.+-..
T Consensus 111 ~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 111 DTGMFTSSSFD-----KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP-----KVQLCDLKSGSCSH 180 (408)
T ss_dssp CTTCEEEEETT-----SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS-----SEEEEESSSSCCCE
T ss_pred CCcEEEEEeCC-----CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC-----eEEEEeCCCcceee
Confidence 45577777754 4688899888775444333222211111111 345777777643 58889987654221
Q ss_pred ccCCCCCCcceeEEEE--CC-EEEEEeccCCCccccEEEEEeCCCCc--EEEccC------------CCCCCcceEEEEE
Q psy10286 633 VKPMLTKRCRLGVAAL--NN-KIYVCGGYDGAIFLQSVEMYDPITDE--WKMIAS------------MNVMRSRVALVAN 695 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~------------~p~~r~~~~~~~~ 695 (748)
. +...........+ ++ .+++.|+.++ .+.+||..+.. ...+.. ..........+..
T Consensus 181 ~--~~~~~~~v~~~~~~~~~~~ll~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 181 I--LQGHRQEILAVSWSPRYDYILATASADS-----RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp E--ECCCCSCEEEEEECSSCTTEEEEEETTS-----CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred e--ecCCCCcEEEEEECCCCCcEEEEEcCCC-----cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 1 1111222222333 33 3788887653 57888886543 122110 0111122222333
Q ss_pred --CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 696 --MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 696 --~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+++.++.||.++ .+.+||..++.
T Consensus 254 ~~~~~~l~~~~~dg-----~i~vwd~~~~~ 278 (408)
T 4a11_B 254 TSDGLHLLTVGTDN-----RMRLWNSSNGE 278 (408)
T ss_dssp CTTSSEEEEEETTS-----CEEEEETTTCC
T ss_pred cCCCCEEEEecCCC-----eEEEEECCCCc
Confidence 567777777543 58999988764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=9.1 Score=37.00 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=103.6
Q ss_pred cccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC
Q psy10286 467 SCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF 544 (748)
Q Consensus 467 ~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~ 544 (748)
+.++........+++||+....-..+..... ..-+++++. ++.||+.-.. .+.++++|+....-..+.+...
T Consensus 48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~~~lyv~d~~-----~~~I~~~~~~g~~~~~~~~~~~ 121 (267)
T 1npe_A 48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLGRTIFWTDSQ-----LDRIEVAKMDGTQRRVLFDTGL 121 (267)
T ss_dssp TEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSC
T ss_pred CEEEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecCCeEEEEECC-----CCEEEEEEcCCCCEEEEEECCC
Confidence 3344433344678889887664333221111 122445554 5799997642 3578999987543333222111
Q ss_pred CcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeE
Q psy10286 545 KRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 545 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~ 620 (748)
. .-.++++. ++++|+..... ....++++++....-+.+..... ..-.+++.- ++.||+.-.. .+.+
T Consensus 122 ~-~P~~i~vd~~~g~lyv~~~~~---~~~~I~~~~~dg~~~~~~~~~~~-~~P~gia~d~~~~~lyv~d~~-----~~~I 191 (267)
T 1npe_A 122 V-NPRGIVTDPVRGNLYWTDWNR---DNPKIETSHMDGTNRRILAQDNL-GLPNGLTFDAFSSQLCWVDAG-----THRA 191 (267)
T ss_dssp S-SEEEEEEETTTTEEEEEECCS---SSCEEEEEETTSCCCEEEECTTC-SCEEEEEEETTTTEEEEEETT-----TTEE
T ss_pred C-CccEEEEeeCCCEEEEEECCC---CCcEEEEEecCCCCcEEEEECCC-CCCcEEEEcCCCCEEEEEECC-----CCEE
Confidence 1 12344443 68999985321 13578888876544333322111 122333443 5789988654 3579
Q ss_pred EEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 621 ERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 621 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
+++|+....-..+.. ....-.+++.-++.+|+.... .+.|.++|+.+.+-.
T Consensus 192 ~~~~~~g~~~~~~~~--~~~~P~gi~~d~~~lyva~~~-----~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 192 ECLNPAQPGRRKVLE--GLQYPFAVTSYGKNLYYTDWK-----TNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEETTEEEEEEEEE--CCCSEEEEEEETTEEEEEETT-----TTEEEEEETTTTEEE
T ss_pred EEEecCCCceEEEec--CCCCceEEEEeCCEEEEEECC-----CCeEEEEeCCCCCce
Confidence 999997643222211 111224566668899997632 257999999877644
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=7.1 Score=44.22 Aligned_cols=208 Identities=13% Similarity=0.060 Sum_probs=107.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCC--------CCCceEEEEeCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGV--------SSLNTVECYEPD 579 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~yd~~ 579 (748)
+|+..+++-..++.....++++|..+++..... .+..+....+-. |++-++++..+.. .....++.++..
T Consensus 139 Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lg 216 (693)
T 3iuj_A 139 DGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLG 216 (693)
T ss_dssp TSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETT
T ss_pred CCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECC
Confidence 565555543222223357999999999875431 111112222333 6643333332211 334568888877
Q ss_pred CCeE--EEccCCCC--CCcceEEEE-ECCE-EEEEccCCCCcccCeEEEEECCCC--cEEEccCCCCCCcceeEEEECCE
Q psy10286 580 KDQW--RIVKSMQK--HRSAGGVIA-FDSY-VYALGGHDGLSIFDSVERYDPKTD--EWTSVKPMLTKRCRLGVAALNNK 651 (748)
Q Consensus 580 ~~~W--~~~~~~~~--~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~ 651 (748)
+..= ..+-..+. +....+... -+++ |++...... ..+.++.+|..+. .|..+..-.... .......+++
T Consensus 217 t~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~--~~~~i~~~d~~~~~~~~~~l~~~~~~~-~~~~~~~g~~ 293 (693)
T 3iuj_A 217 TAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST--SGNRLYVKDLSQENAPLLTVQGDLDAD-VSLVDNKGST 293 (693)
T ss_dssp SCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS--SCCEEEEEETTSTTCCCEEEECSSSSC-EEEEEEETTE
T ss_pred CCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC--CCcEEEEEECCCCCCceEEEeCCCCce-EEEEeccCCE
Confidence 6542 11211121 222222222 2454 444333221 1368999998765 677764322111 1223345889
Q ss_pred EEEEeccCCCccccEEEEEeCCCC---cEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 652 IYVCGGYDGAIFLQSVEMYDPITD---EWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 652 i~v~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
+|+....++ ....++.+|..+. .|+.+.+-.... . +....++.|++..-.++ ...++++|+.++..+.+
T Consensus 294 l~~~t~~~~--~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~-~~s~~g~~lv~~~~~~g---~~~l~~~d~~g~~~~~l 365 (693)
T 3iuj_A 294 LYLLTNRDA--PNRRLVTVDAANPGPAHWRDLIPERQQV-L-TVHSGSGYLFAEYMVDA---TARVEQFDYEGKRVREV 365 (693)
T ss_dssp EEEEECTTC--TTCEEEEEETTSCCGGGCEEEECCCSSC-E-EEEEETTEEEEEEEETT---EEEEEEECTTSCEEEEE
T ss_pred EEEEECCCC--CCCEEEEEeCCCCCccccEEEecCCCCE-E-EEEEECCEEEEEEEECC---eeEEEEEECCCCeeEEe
Confidence 999876543 2468999998763 488763322222 2 55556777766543332 24688888876655554
|
| >1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D | Back alignment and structure |
|---|
Probab=92.01 E-value=0.081 Score=46.49 Aligned_cols=39 Identities=10% Similarity=0.267 Sum_probs=32.6
Q ss_pred EEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCc
Q psy10286 236 TIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNV 274 (748)
Q Consensus 236 ~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~ 274 (748)
.+..+++.+|+.+|+++++..|.+.|++++...+.-.+.
T Consensus 88 ~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~ 126 (141)
T 1fs1_B 88 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTP 126 (141)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCH
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCH
Confidence 456788999999999999999999999999876655543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=15 Score=43.94 Aligned_cols=145 Identities=10% Similarity=-0.049 Sum_probs=79.8
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEE-EEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVE-EFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~-~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..++.++..++....+...+..+....... +++.+++++. ...+| .||..+.+...+. .........+..
T Consensus 317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-----~~~l~~~~d~~~~~~~~l~--~~~~~~~~~~~Sp 388 (1045)
T 1k32_A 317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTR-----EGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDR 388 (1045)
T ss_dssp TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEET-----TEEEEEEEETTTCCEEECC--CCCCSEEEEEECT
T ss_pred CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEEC-----CCceEEEEECCCCCceEec--CCccceeeeEECC
Confidence 467888887777665543332121122222 5554455442 24788 9999888766655 221222233332
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCC-----CcccCeEEEEECCCCc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDG-----LSIFDSVERYDPKTDE 629 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~yd~~~~~ 629 (748)
+|+..++++.+ ..++.||..+++-..+..-........+..-+|+..++++.++ ......++.+|..+.+
T Consensus 389 DG~~la~~~~~-----~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 389 NGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCEEEEECCC-----CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 67666666533 4899999998876655422211112222223666555555422 1123579999999887
Q ss_pred EEEcc
Q psy10286 630 WTSVK 634 (748)
Q Consensus 630 W~~~~ 634 (748)
...+.
T Consensus 464 ~~~l~ 468 (1045)
T 1k32_A 464 IFAAT 468 (1045)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 65554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=91.69 E-value=0.95 Score=48.00 Aligned_cols=190 Identities=10% Similarity=0.111 Sum_probs=89.7
Q ss_pred EEEEccCCCCCCCCeEEEEECCCC---eEEE--ccCC-CCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCe
Q psy10286 511 LYAFGGYNGSERLSTVEEFDPVRR---VWNK--VSPM-CFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQ 582 (748)
Q Consensus 511 iyv~GG~~~~~~~~~v~~yd~~t~---~W~~--~~~~-~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 582 (748)
+++.|+.+ ..+..||..+. .+.. ...+ .....-++++.. ++.+++.|+.+ ..+..||..+..
T Consensus 196 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNNN 265 (430)
T ss_dssp EEEEECTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCSC
T ss_pred eEEEEeCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCCC
Confidence 66667644 35778887762 1211 1111 111222333333 56677777644 468889987652
Q ss_pred -EEEccCCCCCCcceEEEEE---CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE---CCEEEEE
Q psy10286 583 -WRIVKSMQKHRSAGGVIAF---DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL---NNKIYVC 655 (748)
Q Consensus 583 -W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~ 655 (748)
...+..+........++.+ +..+++.|+.++ .+..||..+.. ..+..+.........+.+ +..+++.
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg-----~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK-----TVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTS-----EEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCC-----eEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 1111111111111222222 335888888743 68889987632 011111111122222333 3357888
Q ss_pred eccCCCccccEEEEEeCCCCcE------------EEccCCCCCCcceEEEEE--CCE-EEEEeCCCCCCCCCeEEEEeCC
Q psy10286 656 GGYDGAIFLQSVEMYDPITDEW------------KMIASMNVMRSRVALVAN--MGK-LWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~~W------------~~~~~~p~~r~~~~~~~~--~~~-l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
||.++ .+.+||.....= ..+............+.. ++. +++.|+.+ ..+.+|++.
T Consensus 340 ~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d-----g~i~iw~~~ 409 (430)
T 2xyi_A 340 SGTDR-----RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED-----NIMQVWQMA 409 (430)
T ss_dssp EETTS-----CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT-----SEEEEEEEC
T ss_pred EeCCC-----cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC-----CCEEEeEcc
Confidence 87653 567777655110 000011111111222222 444 77777643 468888887
Q ss_pred CCceEe
Q psy10286 721 TDSWAF 726 (748)
Q Consensus 721 ~~~W~~ 726 (748)
++.+..
T Consensus 410 ~~~~~~ 415 (430)
T 2xyi_A 410 ENVYND 415 (430)
T ss_dssp HHHHCC
T ss_pred cccccC
Confidence 776653
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=91.44 E-value=12 Score=37.06 Aligned_cols=189 Identities=16% Similarity=0.225 Sum_probs=94.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCC--CeEEEccCCCCCcce-eEEEEE---CCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVR--RVWNKVSPMCFKRSA-VGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
++..++.|+.+ ..+..||..+ ..|.....+...... .+++.. ++.+++.||.+ ..+..||..+.
T Consensus 22 ~~~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d-----g~v~vwd~~~~ 91 (351)
T 3f3f_A 22 YGRHVATCSSD-----QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD-----KTVKLWEEDPD 91 (351)
T ss_dssp SSSEEEEEETT-----SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT-----SCEEEEEECTT
T ss_pred CCCEEEEeeCC-----CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC-----CeEEEEecCCC
Confidence 45566666643 3566666654 344444332222222 223332 36777888765 35677777654
Q ss_pred -------eEEEccCCCCCCcceEEEEE--C--CEEEEEccCCCCcccCeEEEEECCCCc----EEEcc-----CC-CCC-
Q psy10286 582 -------QWRIVKSMQKHRSAGGVIAF--D--SYVYALGGHDGLSIFDSVERYDPKTDE----WTSVK-----PM-LTK- 639 (748)
Q Consensus 582 -------~W~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~~~----W~~~~-----~~-p~~- 639 (748)
.|..+..+.........+.+ + +..++.|+.++ .+..||..+.+ |.... .. +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 92 QEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG-----ILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp SCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC-----EEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred cccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC-----cEEEecCCChHHhccccccccccccccccCCc
Confidence 34444333322222222222 3 66777777643 68888877653 22110 11 111
Q ss_pred CcceeEEEE-----CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CC----EEEEEeCCCCC
Q psy10286 640 RCRLGVAAL-----NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MG----KLWAIGGYDGV 708 (748)
Q Consensus 640 r~~~~~~~~-----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~----~l~v~GG~~~~ 708 (748)
.....+..+ ++..+++|+.++ .+..++.....+..+..+.........+.. ++ ++++.||.++
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg- 240 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQ-----AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG- 240 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTE-----EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS-
T ss_pred ccceeEEEeccCCCCCcEEEEecCCC-----cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC-
Confidence 111122222 266777777542 445566666666555444433333333333 33 7888887553
Q ss_pred CCCCeEEEEeCCC
Q psy10286 709 SNLPTVEVYDPST 721 (748)
Q Consensus 709 ~~~~~v~~yd~~~ 721 (748)
.+.+||..+
T Consensus 241 ----~i~iwd~~~ 249 (351)
T 3f3f_A 241 ----RIRIFKITE 249 (351)
T ss_dssp ----CEEEEEEEE
T ss_pred ----eEEEEeCCC
Confidence 477777655
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.40 E-value=5.5 Score=36.83 Aligned_cols=144 Identities=10% Similarity=0.092 Sum_probs=80.3
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCe---EEEc----cCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV---WNKV----SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECY 576 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~---W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 576 (748)
++..++.+|+|-| +.+|+++..... =..+ +.+|.. -..+....++++|+|-| +..|+|
T Consensus 11 ~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~~-iDAa~~~~~g~~yfFkg-------~~yw~~ 75 (196)
T 3c7x_A 11 VAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPAS-INTAYERKDGKFVFFKG-------DKHWVF 75 (196)
T ss_dssp EEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCSS-CCEEEECTTSCEEEEET-------TEEEEE
T ss_pred EEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCCC-ccEEEEeCCCcEEEecC-------CEEEEE
Confidence 4466899999987 468888643210 0112 234542 22221124789999988 578888
Q ss_pred eCCCCeE---EEccC----CCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEE-----ccCC-CCCCcc
Q psy10286 577 EPDKDQW---RIVKS----MQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----VKPM-LTKRCR 642 (748)
Q Consensus 577 d~~~~~W---~~~~~----~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~~~-p~~r~~ 642 (748)
+..+... ..+.. +|.....++... .++++|+|-|. ..|+||..+++-.. +... ..+..-
T Consensus 76 ~~~~~~~gyPk~I~~~~~glP~~~IDAA~~~~~~g~~yfFkG~-------~yw~yd~~~~~v~~gyPk~i~~~~gip~~i 148 (196)
T 3c7x_A 76 DEASLEPGYPKHIKELGRGLPTDKIDAALFWMPNGKTYFFRGN-------KYYRFNEELRAVDSEYPKNIKVWEGIPESP 148 (196)
T ss_dssp ETTEECTTCSEEGGGTCBSCCSSCCSEEEEETTTTEEEEEETT-------EEEEEETTTTEECTTCSEEGGGSBTCCSSC
T ss_pred eCCcccCCCCeEhhhcCCCCCCCcccEEEEEccCCEEEEEECC-------EEEEEeCCcccccCCCCccHHHCCCcCCCc
Confidence 8542110 12222 332222222222 26899999884 78999987764321 1111 112222
Q ss_pred eeEEEE-CC-EEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 643 LGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 643 ~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
.++... ++ ++|++-| +..|.||..+.+
T Consensus 149 daAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 149 RGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp SEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred ceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 333344 44 8999987 688999988764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.26 E-value=10 Score=42.75 Aligned_cols=188 Identities=16% Similarity=0.165 Sum_probs=91.3
Q ss_pred ecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC-
Q psy10286 464 STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP- 541 (748)
Q Consensus 464 ~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~- 541 (748)
..++.....|..-..+..+|..+++-...-. .+...-.+++.. ++..++.|+.+ ..+..||.....-..+..
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D-----~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRD-----RTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETT-----SCEEEECTTSCEEEEECSS
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCC-----CEEEEEECCCCcceeeccC
Confidence 3333333333344578888988765322110 011111222222 56666777754 357778876543222221
Q ss_pred CCCCcceeEEEEE--CC--EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce-EEEEE-CCEEEEEccCCCCc
Q psy10286 542 MCFKRSAVGAAAL--ND--KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG-GVIAF-DSYVYALGGHDGLS 615 (748)
Q Consensus 542 ~~~~r~~~~~~~~--~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~ 615 (748)
....+....++.+ ++ ..++.|+.+ ..+..||..+.+-... +......- +++.. ++.+++.||.++
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----~~v~vwd~~~~~~~~~--~~~h~~~v~~v~~spdg~~l~sg~~Dg-- 583 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWD-----KTVKVWNLSNCKLRST--LAGHTGYVSTVAVSPDGSLCASGGKDG-- 583 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETT-----SCEEEEETTTCCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCC-----CeEEEEECCCCcEEEE--EcCCCCCEEEEEEeCCCCEEEEEeCCC--
Confidence 1111222223333 22 456667654 4678889877654322 11111111 22222 677788888754
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcE
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEW 677 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 677 (748)
.+..+|..+.+-.. .+.....-++++.. ++.+++. |.+ +.+.+||..+..-
T Consensus 584 ---~i~iwd~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~~-~~~-----~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 584 ---VVLLWDLAEGKKLY--SLEANSVIHALCFSPNRYWLCA-ATE-----HGIKIWDLESKSI 635 (694)
T ss_dssp ---BCEEEETTTTEEEE--CCBCSSCEEEEEECSSSSEEEE-EET-----TEEEEEETTTTEE
T ss_pred ---eEEEEECCCCceEE--EecCCCcEEEEEEcCCCcEEEE-EcC-----CCEEEEECCCCCC
Confidence 57788887775322 22222222333333 3444444 332 4588899887654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=91.22 E-value=13 Score=37.05 Aligned_cols=214 Identities=14% Similarity=0.118 Sum_probs=100.4
Q ss_pred CccceEEEEeCCCCceEEccCCCccccee-EEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEE
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRV-GVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 551 (748)
..-..+..||..+++-... +....... +++.. ++.+++.|+.+ ..+..||.....-..+..-. ..-.++
T Consensus 84 s~D~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D-----~~i~vwd~~~~~~~~~~~h~--~~v~~~ 154 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRD-----KTIKVWTIKGQCLATLLGHN--DWVSQV 154 (319)
T ss_dssp ETTSEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETT-----SCEEEEETTSCEEEEECCCS--SCEEEE
T ss_pred eCCCEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeccC--CcEEEE
Confidence 3345788899888753221 11111111 22222 56677778755 35777887655433322111 111112
Q ss_pred EEE-------CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce-EEEEE-CCEEEEEccCCCCcccCeEEE
Q psy10286 552 AAL-------NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG-GVIAF-DSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 552 ~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~ 622 (748)
... ++..++.||.+ ..+..||..+.+-... +......- +++.. ++..++.||.++ .+..
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~--~~~h~~~v~~~~~sp~g~~l~s~~~dg-----~i~i 222 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEAD--FIGHNSNINTLTASPDGTLIASAGKDG-----EIML 222 (319)
T ss_dssp EECCC------CCEEEEEETT-----SCEEEEETTTTEEEEE--ECCCCSCEEEEEECTTSSEEEEEETTC-----EEEE
T ss_pred EEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhhee--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEE
Confidence 221 23356666654 3577888876653221 11111111 22222 677777887643 6888
Q ss_pred EECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCc-EEEccC-CCC---C-CcceEEEE-
Q psy10286 623 YDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDE-WKMIAS-MNV---M-RSRVALVA- 694 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~-~p~---~-r~~~~~~~- 694 (748)
||..+.+-... +.....-.+++.. ++.+++.|.. +.+.+|+..... +..+.. ... . ......+.
T Consensus 223 wd~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 223 WNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp EETTTTEEEEE--EECCSCEEEEEECSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred EECCCCcEEEE--ecCCCcEEEEEEcCCCCEEEEEcC------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 99877653221 1111111222222 4555555432 345666655432 222211 110 0 11112222
Q ss_pred -ECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 695 -NMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 695 -~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
-+++.++.|+.++ .|.+||..+
T Consensus 295 spdg~~l~sg~~Dg-----~i~vWd~~t 317 (319)
T 3frx_A 295 SADGQTLFAGYTDN-----VIRVWQVMT 317 (319)
T ss_dssp CTTSSEEEEEETTS-----CEEEEEEEE
T ss_pred CCCCCEEEEeecCc-----eEEEEEEee
Confidence 2788888888553 477777654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=10 Score=37.87 Aligned_cols=192 Identities=10% Similarity=0.027 Sum_probs=98.6
Q ss_pred ccccccCCCccceEEEEeCCCCceEEccCCCc--c-cceeEEEEE--CCEEEEEccCCC------------CCCCCeEEE
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSM--L-RSRVGVAVM--KNRLYAFGGYNG------------SERLSTVEE 528 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~--~-r~~~~~~~~--~~~iyv~GG~~~------------~~~~~~v~~ 528 (748)
++.++.... ...+..||+.++..+.+..... + ..-..+++. +|.||+.-.... ......+++
T Consensus 91 ~g~l~v~d~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~ 169 (322)
T 2fp8_A 91 NNQLYIVDC-YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK 169 (322)
T ss_dssp TTEEEEEET-TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred CCcEEEEEC-CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence 444544421 2458889988776655432211 1 112333333 578998642210 112356999
Q ss_pred EECCCCeEEEcc-CCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeCCC---CeEEEccCCCCCCcceEEEEE-
Q psy10286 529 FDPVRRVWNKVS-PMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEPDK---DQWRIVKSMQKHRSAGGVIAF- 601 (748)
Q Consensus 529 yd~~t~~W~~~~-~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~---~~W~~~~~~~~~r~~~~~~~~- 601 (748)
||+.+.+...+. .+.. ..+++.. ++ .+|+.-.. .+.+++||+.. ..++....++. -..++.-
T Consensus 170 ~d~~~~~~~~~~~~~~~---p~gia~~~dg~~lyv~d~~-----~~~I~~~~~~~~~~~~~~~~~~~~g---P~gi~~d~ 238 (322)
T 2fp8_A 170 YDPSTKETTLLLKELHV---PGGAEVSADSSFVLVAEFL-----SHQIVKYWLEGPKKGTAEVLVKIPN---PGNIKRNA 238 (322)
T ss_dssp EETTTTEEEEEEEEESC---CCEEEECTTSSEEEEEEGG-----GTEEEEEESSSTTTTCEEEEEECSS---EEEEEECT
T ss_pred EeCCCCEEEEeccCCcc---CcceEECCCCCEEEEEeCC-----CCeEEEEECCCCcCCccceEEeCCC---CCCeEECC
Confidence 999888765432 1111 1234443 44 58887331 25788998875 23444333322 1223332
Q ss_pred CCEEEEEccCCCC-----cccCeEEEEECCCCcEEEccCCCC---CCcceeEEEECCEEEEEeccCCCccccEEEEEeCC
Q psy10286 602 DSYVYALGGHDGL-----SIFDSVERYDPKTDEWTSVKPMLT---KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPI 673 (748)
Q Consensus 602 ~~~iyv~GG~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~---~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~ 673 (748)
+|.||+....... .....+.+||+....-..+. .+. .....+++..+++|||.+.. .+.|.+|++.
T Consensus 239 ~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g~~~~~~~~~~~~~g~L~v~~~~-----~~~i~~~~~~ 312 (322)
T 2fp8_A 239 DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPPFAGEHFEQIQEHDGLLYIGTLF-----HGSVGILVYD 312 (322)
T ss_dssp TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTTTTTSCCCEEEEETTEEEEECSS-----CSEEEEEEC-
T ss_pred CCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCCCccccceEEEEeCCEEEEeecC-----CCceEEEecc
Confidence 5788887542100 01246899999755444443 121 12223444568899987543 2578888875
Q ss_pred CC
Q psy10286 674 TD 675 (748)
Q Consensus 674 ~~ 675 (748)
.+
T Consensus 313 ~~ 314 (322)
T 2fp8_A 313 KK 314 (322)
T ss_dssp --
T ss_pred cc
Confidence 43
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=90.90 E-value=4.1 Score=46.29 Aligned_cols=218 Identities=13% Similarity=0.066 Sum_probs=115.6
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC-cceeEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK-RSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~-r~~~~~ 551 (748)
..+..++..+.....+... .+.-+++++. ++.||+.-. ....++++++.+.. ......+... ..-.++
T Consensus 386 ~~I~~id~~~~~~~~~~~~--~~~p~gla~d~~~~~Ly~sD~-----~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl 458 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPN--LRNVVALDTEVASNRIYWSDL-----SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 458 (699)
T ss_dssp TC-CEECTTSCCEECCSCC--CTTCCCCEEETTTTEEEECCT-----TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred cceEEEeCCCCcceeeecc--CcceEEEccccccCeEEEEec-----CCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence 4677788877776655332 2223344444 678998643 22468888887510 0011111111 111233
Q ss_pred EE--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC--CCCCCcceEEEE--ECCEEEEEccCCCCcccCeEEEEEC
Q psy10286 552 AA--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS--MQKHRSAGGVIA--FDSYVYALGGHDGLSIFDSVERYDP 625 (748)
Q Consensus 552 ~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~ 625 (748)
++ .+++||+.-. ....++++|+....-..+.. +..|+ ++++ .++.||+.... ....|+++++
T Consensus 459 avD~~~g~LY~tD~-----~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~----~~~~I~~~~~ 526 (699)
T 1n7d_A 459 AVDWIHSNIYWTDS-----VLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWG----TPAKIKKGGL 526 (699)
T ss_dssp ECCCSSSBCEECCT-----TTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCS----SSCCEEBCCS
T ss_pred EEEeeCCcEEEEec-----cCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccC----CCCeEEEEeC
Confidence 33 3678998632 23568899988765444422 22332 3333 36788876421 1246888887
Q ss_pred CCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-CCCcceEEEEECCEEEEE
Q psy10286 626 KTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKLWAI 702 (748)
Q Consensus 626 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~l~v~ 702 (748)
....-+.+..... ..-.++++- +++||+.-.. .+.|+++|+....-..+...+ ......++++.++.||+.
T Consensus 527 dG~~~~~l~~~~l-~~PnGlavd~~~~~LY~aD~~-----~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 527 NGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK-----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp SSCCCCEESCSSC-SSCCCEEECTTTCCEEEEETT-----TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred CCCCeeEEEeCCC-CCccEEEEeccCCEEEEEecC-----CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 6543333321111 111233432 5789998643 368999998764444443221 112234566678899998
Q ss_pred eCCCCCCCCCeEEEEeCCCCce
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W 724 (748)
-. ....|.++|+.+++-
T Consensus 601 d~-----~~~~V~~~d~~~G~~ 617 (699)
T 1n7d_A 601 DI-----INEAIFSANRLTGSD 617 (699)
T ss_dssp CS-----TTTCEEEEETTTEEE
T ss_pred eC-----CCCeEEEEEccCCCc
Confidence 53 224789999876543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=90.75 E-value=1.3 Score=47.03 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=76.6
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
++.+.+.|+.++ .+..||..+......-... ....-.+++.. ++.+++.||.++ .+..+|..++...
T Consensus 131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~-----~v~iwd~~~~~~~ 200 (435)
T 4e54_B 131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG-----TTRLQDFKGNILR 200 (435)
T ss_dssp CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS-----CEEEEETTSCEEE
T ss_pred CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC-----EEEEeeccCCcee
Confidence 445667777553 5777887765533222221 11122233332 566777777654 4788898887665
Q ss_pred EccCCCCCCcc-eeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE---CCEEEEEeCCC
Q psy10286 632 SVKPMLTKRCR-LGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN---MGKLWAIGGYD 706 (748)
Q Consensus 632 ~~~~~p~~r~~-~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~ 706 (748)
.+......... .++.. -++.+++.|+.+ ..|..||..... +..+........++.+ ++.+++.||.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d-----g~i~~wd~~~~~---~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNV-----GNVILLNMDGKE---LWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSS-----SBEEEEESSSCB---CCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCC-----CcEeeeccCcce---eEEEecccceEEeeeecCCCceEEEEecCc
Confidence 54332222221 22222 367788888765 368888876543 2222222222233333 34577777754
Q ss_pred CCCCCCeEEEEeCCCC
Q psy10286 707 GVSNLPTVEVYDPSTD 722 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~ 722 (748)
+ .|.+||..+.
T Consensus 273 ~-----~v~iwd~~~~ 283 (435)
T 4e54_B 273 Q-----TVKIWDLRQV 283 (435)
T ss_dssp S-----BCCEEETTTC
T ss_pred c-----eeeEEecccc
Confidence 3 4667776554
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=90.75 E-value=11 Score=35.73 Aligned_cols=138 Identities=13% Similarity=0.151 Sum_probs=78.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEE------CCCCeEEE--c----cCCC---CCcceeEEEE--ECCEEEEEeCCCCCCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFD------PVRRVWNK--V----SPMC---FKRSAVGAAA--LNDKLYVCGGYDGVSSL 570 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd------~~t~~W~~--~----~~~~---~~r~~~~~~~--~~~~iyv~GG~~~~~~~ 570 (748)
.|.+|+|-| ..+|+++ ........ + +.+| ......-++. .++++|+|-|
T Consensus 13 ~ge~~fFk~-------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg------- 78 (225)
T 3oyo_A 13 EYEVYFFAK-------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSG------- 78 (225)
T ss_dssp TTEEEEEET-------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEET-------
T ss_pred CCEEEEEEC-------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcC-------
Confidence 788999977 4688887 22111211 1 2344 1112232333 5899999988
Q ss_pred ceEEEEeCC----CCeEEEc--------cCCCCC--CcceEEE-E--ECCEEEEEccCCCCcccCeEEEEECCCCcEEE-
Q psy10286 571 NTVECYEPD----KDQWRIV--------KSMQKH--RSAGGVI-A--FDSYVYALGGHDGLSIFDSVERYDPKTDEWTS- 632 (748)
Q Consensus 571 ~~~~~yd~~----~~~W~~~--------~~~~~~--r~~~~~~-~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~- 632 (748)
+..|+||.. .+....- +.+|.. ...--+| . .++++|+|-|. ..|+||..+++...
T Consensus 79 ~~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG~-------~yw~~d~~~~~~~~g 151 (225)
T 3oyo_A 79 NHSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKGN-------KYVRIAYDSKQLVGN 151 (225)
T ss_dssp TEEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEETT-------EEEEEETTTTEEEEE
T ss_pred CEEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeCC-------eEEEEECCCCeecCC
Confidence 578999753 2222211 123321 0022233 2 27899999884 79999977766543
Q ss_pred ---cc-CCCC------CCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCC
Q psy10286 633 ---VK-PMLT------KRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPI 673 (748)
Q Consensus 633 ---~~-~~p~------~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~ 673 (748)
+. ..|. +..--++... ++++|++-| +..|+||..
T Consensus 152 Pk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~ 197 (225)
T 3oyo_A 152 IRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFT 197 (225)
T ss_dssp EEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECC
T ss_pred CcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCC
Confidence 11 1221 2222334443 789999988 688999987
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=90.70 E-value=5.7 Score=40.88 Aligned_cols=147 Identities=12% Similarity=0.081 Sum_probs=83.6
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeE--EEc----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVW--NKV----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (748)
+++.++|.+|+|=| +.+|+++.....- ..+ +.+|.. -. ++... ++++|+|-| +..|
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~~-iD-Aa~~~~~~g~~~fFkg-------~~yW 248 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPSG-IE-AAYEIEARNQVFLFKD-------DKYW 248 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCSS-CC-EEEEEGGGTEEEEEET-------TEEE
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCCC-cc-EEEEecCCCEEEEEeC-------CEEE
Confidence 34556999999977 4577776554321 112 234532 22 23333 799999987 5677
Q ss_pred EEeCCCCe--E-EEccC--CCCCC-cceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE-----cc-CCC-CC
Q psy10286 575 CYEPDKDQ--W-RIVKS--MQKHR-SAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----VK-PML-TK 639 (748)
Q Consensus 575 ~yd~~~~~--W-~~~~~--~~~~r-~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~-~~p-~~ 639 (748)
+|+...-. + +.+.. +|..- .--++... ++++|+|-|. ..|+||..+++-.. +. ..| .+
T Consensus 249 r~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG~-------~yw~yd~~~~~v~~gyPk~I~~~f~g~p 321 (365)
T 3ba0_A 249 LISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVDN-------QYWRYDERRQMMDPGYPKLITKNFQGIG 321 (365)
T ss_dssp ECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCCCCHHHHSTTCC
T ss_pred EEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEECC-------EEEEEeCCcceecCCCCcchhhcCCCCC
Confidence 77653211 1 12222 23211 12233333 5899999884 79999987664321 10 011 12
Q ss_pred CcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEE
Q psy10286 640 RCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679 (748)
Q Consensus 640 r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (748)
..--++... ++++|++-| +..|+||..+.+-..
T Consensus 322 ~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 322 PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 223344445 889999987 689999998876544
|
| >3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata} | Back alignment and structure |
|---|
Probab=90.69 E-value=9.7 Score=36.04 Aligned_cols=140 Identities=13% Similarity=0.070 Sum_probs=79.0
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEe------CCCCeEEE--c----cCCCC-----CCcceEEEEECCEEEEEccCCCCcc
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYE------PDKDQWRI--V----KSMQK-----HRSAGGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd------~~~~~W~~--~----~~~~~-----~r~~~~~~~~~~~iyv~GG~~~~~~ 616 (748)
.+|++|+|-| ..+|+++ ........ + +.+|. ....++....++++|+|-|.
T Consensus 12 ~~ge~~fFk~-------~~~wr~~~~~~~~~~~~~~~p~~I~~~Wp~LP~~~f~~~~iDAa~~~~~g~~~fFkg~----- 79 (225)
T 3oyo_A 12 SEYEVYFFAK-------NKYVRLHYTPGASSDTILTNLRLISSGFPSLAGTPFAEPGIDCSFHTEASEAYVFSGN----- 79 (225)
T ss_dssp STTEEEEEET-------TEEEEEECCTTCSCCEEEEEEEEHHHHCGGGTTSTTTTTCCSEEEECSTTEEEEEETT-----
T ss_pred CCCEEEEEEC-------CEEEEEecccccccCcccCCceehhhhcccCCCccCCCCCEeEEEEcCCCeEEEEcCC-----
Confidence 3789999987 4678887 22111211 1 23441 22222222258999999884
Q ss_pred cCeEEEEECCC----CcEEE----c----cCCCCC--CcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEEE
Q psy10286 617 FDSVERYDPKT----DEWTS----V----KPMLTK--RCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679 (748)
Q Consensus 617 ~~~~~~yd~~~----~~W~~----~----~~~p~~--r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (748)
..|+||..+ +.... + +.+|.. ....-++.. ++++|++-| +..|+||...++...
T Consensus 80 --~~W~~d~~~~t~~~~~~~gP~~I~~~wp~LP~~~~~~~IDAA~~~~~~gk~yfFkG-------~~yw~~d~~~~~~~~ 150 (225)
T 3oyo_A 80 --HSAYIDYAPGTTNDKILVGPTTIAEMFPVLNNTVFEDSIDSAFRSTKGKEVYLFKG-------NKYVRIAYDSKQLVG 150 (225)
T ss_dssp --EEEEEECCTTSSCCEEEEEEEEHHHHCGGGTTSTTTSCCCEEEECSSTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred --EEEEEecccccCCCceecCchhhhhcCCCCCCcccccccceEEEECCCCcEEEEeC-------CeEEEEECCCCeecC
Confidence 789997632 22221 1 122321 012233332 689999988 689999977765543
Q ss_pred ----cc-CCCC------CCcceEEEE--ECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 680 ----IA-SMNV------MRSRVALVA--NMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 680 ----~~-~~p~------~r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
+. ..|. +..--++.. .++++|+|-| +..|+||..+
T Consensus 151 gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG-------~~ywr~d~~~ 198 (225)
T 3oyo_A 151 NIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG-------QNYVRIDFTP 198 (225)
T ss_dssp EEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEECCT
T ss_pred CCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCc
Confidence 11 1221 222223333 3799999987 4789999983
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=90.47 E-value=16 Score=37.19 Aligned_cols=190 Identities=8% Similarity=-0.066 Sum_probs=100.0
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+|++.++++.. ....+..+|+.+.+......-.. .-.+++.. +|++++.|+. +.+..++..++.....
T Consensus 144 Dg~~la~as~~---~d~~i~iwd~~~~~~~~~~~~~~--~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 144 EGTVAAIASSK---VPAIMRIIDPSDLTEKFEIETRG--EVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIAR 212 (365)
T ss_dssp TSSCEEEEESC---SSCEEEEEETTTTEEEEEEECSS--CCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEE
T ss_pred CCCEEEEEECC---CCCEEEEeECCCCcEEEEeCCCC--ceEEEEEccCCceEEeccc------eeEEEEEeccCcceee
Confidence 56554443311 22468889999887544322111 11233332 6777777652 3566777777665433
Q ss_pred cCCCCCCcceE--EEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc--CCCCCCcceeEEEE--CCEEEEEeccCC
Q psy10286 587 KSMQKHRSAGG--VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK--PMLTKRCRLGVAAL--NNKIYVCGGYDG 660 (748)
Q Consensus 587 ~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~i~v~GG~~~ 660 (748)
........... +..-++..++.++.++.. ...++.+|.....+.... .+........++.+ ++++++.|+.+
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D- 290 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND- 290 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT-
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC-
Confidence 22222221112 223378888877764432 124666776666554332 11111122223333 78888888865
Q ss_pred CccccEEEEEeCCCCcEEEccCCCCC-CcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 661 AIFLQSVEMYDPITDEWKMIASMNVM-RSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
..|.+||..+.+- +..+..+ ......+.. ++++++-|+.+ .+|-++|...
T Consensus 291 ----~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D-----~tvrvw~ip~ 343 (365)
T 4h5i_A 291 ----NSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAA-----NTIHIIKLPL 343 (365)
T ss_dssp ----SCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETT-----SEEEEEECCT
T ss_pred ----CEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCC-----CeEEEEEcCC
Confidence 3688999887643 2221111 122223333 78888888755 4688888754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=90.37 E-value=6.8 Score=39.16 Aligned_cols=142 Identities=12% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++...+.|+.+ ..+..||..+++-... +......-..+.+ ++.+++.|+.++ .+..||.....-..
T Consensus 76 dg~~l~s~s~D-----~~v~~wd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~D~-----~i~vwd~~~~~~~~ 143 (319)
T 3frx_A 76 DGAYALSASWD-----KTLRLWDVATGETYQR--FVGHKSDVMSVDIDKKASMIISGSRDK-----TIKVWTIKGQCLAT 143 (319)
T ss_dssp TSSEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEEEEECTTSCEEEEEETTS-----CEEEEETTSCEEEE
T ss_pred CCCEEEEEeCC-----CEEEEEECCCCCeeEE--EccCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeEEE
Confidence 66777777755 4788899888763221 1111111112222 567777777754 47778876544333
Q ss_pred ccCCCCCCcceeEEEE--------CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEE
Q psy10286 633 VKPMLTKRCRLGVAAL--------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAI 702 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~--------~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~ 702 (748)
+..- ......+.+ ++..++.||.+ ..+..||..+.+-.. .+.........+.. ++++++.
T Consensus 144 ~~~h---~~~v~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~--~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 144 LLGH---NDWVSQVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQIEA--DFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ECCC---SSCEEEEEECCC------CCEEEEEETT-----SCEEEEETTTTEEEE--EECCCCSCEEEEEECTTSSEEEE
T ss_pred Eecc---CCcEEEEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcchhhe--eecCCCCcEEEEEEcCCCCEEEE
Confidence 2211 111111111 23356667654 367888887654322 11111112222222 5777777
Q ss_pred eCCCCCCCCCeEEEEeCCCCc
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~ 723 (748)
||.++ .|.+||..+.+
T Consensus 214 ~~~dg-----~i~iwd~~~~~ 229 (319)
T 3frx_A 214 AGKDG-----EIMLWNLAAKK 229 (319)
T ss_dssp EETTC-----EEEEEETTTTE
T ss_pred EeCCC-----eEEEEECCCCc
Confidence 77543 57777776643
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=90.15 E-value=18 Score=39.27 Aligned_cols=199 Identities=15% Similarity=0.146 Sum_probs=95.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||.....-..+.... .....+.+ +++.++.|+.+ ..+..||.....-..+..... .-.+++..
T Consensus 366 g~v~~~~~~~~~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d-----~~v~~~~~~~~~~~~~~~~~~--~v~~~~~s 435 (577)
T 2ymu_A 366 KTVKLWNRNGQLLQTLTGHS---SSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHSS--SVWGVAFS 435 (577)
T ss_dssp SEEEEEETTCCEEEEEECCS---SCEEEEEECTTSSCEEEEETT-----SEEEEECTTCCEEEEEECCSS--CEEEEEEC
T ss_pred CEEEEEcCCCCEEEEecCCC---CCeEEEEECCCCCEEEEEeCC-----CEEEEEeCCCCEEEEecCCCC--CeEEEEEC
Confidence 45677775443333332211 11122222 56666777644 367788865443333222111 11122222
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
+++.++.|+.+ ..+..||.....-..+..-. ..-.+++. -++++++.|+.++ .+..||.....-..
T Consensus 436 ~d~~~l~~~~~d-----~~v~~w~~~~~~~~~~~~~~--~~v~~~~~spd~~~las~~~d~-----~i~iw~~~~~~~~~ 503 (577)
T 2ymu_A 436 PDDQTIASASDD-----KTVKLWNRNGQLLQTLTGHS--SSVRGVAFSPDGQTIASASDDK-----TVKLWNRNGQLLQT 503 (577)
T ss_dssp TTSSEEEEEETT-----SEEEEEETTSCEEEEEECCS--SCEEEEEECTTSCEEEEEETTS-----EEEEEETTSCEEEE
T ss_pred CCCCEEEEEcCC-----CEEEEEECCCCEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCC-----EEEEEcCCCCEEEE
Confidence 66777777754 36778887655444332211 11122222 2677777777643 57778864433222
Q ss_pred ccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeCCCC
Q psy10286 633 VKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGGYDG 707 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~ 707 (748)
+.. .......+.+ +++.++.||.+ ..|.+||.....-..+.... ..-.+++. -+++.++.||.++
T Consensus 504 ~~~---h~~~v~~l~~s~dg~~l~s~~~d-----g~v~lwd~~~~~~~~~~~h~--~~v~~~~fs~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 504 LTG---HSSSVRGVAFSPDGQTIASASDD-----KTVKLWNRNGQLLQTLTGHS--SSVWGVAFSPDGQTIASASSDK 571 (577)
T ss_dssp EEC---CSSCEEEEEECTTSSCEEEEETT-----SEEEEECTTSCEEEEEECCS--SCEEEEEECTTSSCEEEEETTS
T ss_pred EeC---CCCCEEEEEEcCCCCEEEEEECc-----CEEEEEeCCCCEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCC
Confidence 221 1111222222 67777777754 36888886554333332111 11112222 2677777777553
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=90.10 E-value=12 Score=41.42 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=68.9
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC---C---cceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH---R---SAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~---r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.++.++.+|+.++. ..++.+|..+.+ |+.-...+.. . ...+.++.+++||+... ...++.
T Consensus 64 P~v~~g~vyv~~~~------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~------dg~l~A 131 (582)
T 1flg_A 64 AIVSDGVIYVTASY------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL------DASVVA 131 (582)
T ss_dssp CEEETTEEEEEETT------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET------TTEEEE
T ss_pred cEEECCEEEEEcCC------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC------CCEEEE
Confidence 35679999998663 248999987764 9876543321 1 12344568999988542 246999
Q ss_pred EECCCCc--EEEccCCCCCC--cceeEEEECC------EEEEEeccCC-CccccEEEEEeCCCCc--EEE
Q psy10286 623 YDPKTDE--WTSVKPMLTKR--CRLGVAALNN------KIYVCGGYDG-AIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 623 yd~~~~~--W~~~~~~p~~r--~~~~~~~~~~------~i~v~GG~~~-~~~~~~v~~yd~~~~~--W~~ 679 (748)
+|.++.+ |+.-..-+... ...+-++.++ .+|+ |...+ ......++.||..+.+ |+.
T Consensus 132 lD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~v-g~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 132 LNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIH-GSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp EESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEE-CCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred EECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEE-eccccccCCCCEEEEEECCCCCEEeec
Confidence 9998774 87643221111 1122334555 5554 43211 1124579999998765 864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=89.90 E-value=19 Score=36.95 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=39.4
Q ss_pred CCEEEEEeccCC----CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 649 NNKIYVCGGYDG----AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 649 ~~~i~v~GG~~~----~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
++++|+...... ....++|+++|..+.+- +..++.+...+++... +++ +++.+... .+++.+||..++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~ 351 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQISLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAG 351 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCC
Confidence 478898754211 11346899999887654 3333434333444433 554 44443321 257999998775
Q ss_pred ce
Q psy10286 723 SW 724 (748)
Q Consensus 723 ~W 724 (748)
+-
T Consensus 352 ~v 353 (373)
T 2mad_H 352 DQ 353 (373)
T ss_pred CE
Confidence 53
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=89.81 E-value=3.8 Score=44.82 Aligned_cols=257 Identities=11% Similarity=0.009 Sum_probs=144.7
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEE----ECCEEEEEccCC------------CCCCCCeEEEEECCCCe--
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAV----MKNRLYAFGGYN------------GSERLSTVEEFDPVRRV-- 535 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~----~~~~iyv~GG~~------------~~~~~~~v~~yd~~t~~-- 535 (748)
...+.+.+.|+.+.+-..+-.+|....-|+++. -++++|+-+... .....+.+-+.|..+.+
T Consensus 109 ~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~ 188 (595)
T 1fwx_A 109 KANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVA 188 (595)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEE
T ss_pred CCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEE
Confidence 445679999999988666546666556667665 267888876331 12234578889999875
Q ss_pred EEEc-cCCCCCcceeEEEEE-CCEEEEEeCCC-------------------------------C-CCCCceEEEEeCCCC
Q psy10286 536 WNKV-SPMCFKRSAVGAAAL-NDKLYVCGGYD-------------------------------G-VSSLNTVECYEPDKD 581 (748)
Q Consensus 536 W~~~-~~~~~~r~~~~~~~~-~~~iyv~GG~~-------------------------------~-~~~~~~~~~yd~~~~ 581 (748)
|+-. +.-| ....+.. ++.+|+..-.+ | ....+.+-+.|+.+.
T Consensus 189 ~qI~Vgg~p----d~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~ 264 (595)
T 1fwx_A 189 WQVLVSGNL----DNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE 264 (595)
T ss_dssp EEEEESSCC----CCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG
T ss_pred EEEEeCCCc----cceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc
Confidence 5432 1111 1111111 22333332111 1 112356788888873
Q ss_pred eEEE-ccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCc-E---------EEccCCC-CCCcceeEEE
Q psy10286 582 QWRI-VKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDE-W---------TSVKPML-TKRCRLGVAA 647 (748)
Q Consensus 582 ~W~~-~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W---------~~~~~~p-~~r~~~~~~~ 647 (748)
+.+. +...|.+..-|++... +.++|+.++. .+.+.+||..+.+ + ..+...+ ..+-.|.+..
T Consensus 265 ~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-----s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~ 339 (595)
T 1fwx_A 265 ASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-----SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFD 339 (595)
T ss_dssp GCCSSEEEEEEESSCCCEEECTTSSEEEEECTT-----SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEEC
T ss_pred CCceeEEEEecCCCceEEEEcCCCCEEEEeCCC-----CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEEC
Confidence 3222 2334455555666665 4467777765 4679999988652 1 0111222 2234455554
Q ss_pred ECCEEEEEeccCCCccccEEEEEeCCC--------CcEEEccCCCCCCc-ceEEEE-------ECCEEEEEeCCCCCCCC
Q psy10286 648 LNNKIYVCGGYDGAIFLQSVEMYDPIT--------DEWKMIASMNVMRS-RVALVA-------NMGKLWAIGGYDGVSNL 711 (748)
Q Consensus 648 ~~~~i~v~GG~~~~~~~~~v~~yd~~~--------~~W~~~~~~p~~r~-~~~~~~-------~~~~l~v~GG~~~~~~~ 711 (748)
-+|.+|+.-..+ +++..+|..+ +.+..+..++..-. +|.... -+..+|+.-++..+..+
T Consensus 340 ~dG~aY~t~~ld-----sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~ 414 (595)
T 1fwx_A 340 GRGNAYTSLFLD-----SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFL 414 (595)
T ss_dssp TTSEEEEEETTT-----TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSC
T ss_pred CCCeEEEEEecC-----CcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccc
Confidence 567888775433 5677777655 23555554444322 443332 25678887776543321
Q ss_pred -------CeEEEEeCCCCceEecCCCCCCCcceEEEEeec
Q psy10286 712 -------PTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744 (748)
Q Consensus 712 -------~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 744 (748)
.+-.+||..+++-+.+.+.|....=|-+++++.
T Consensus 415 ~~gp~~~~~~ql~dis~~~m~lv~d~p~~~ePh~~~i~~~ 454 (595)
T 1fwx_A 415 NVGPLKPENDQLIDISGDKMVLVHDGPTFAEPHDAIAVHP 454 (595)
T ss_dssp CCCSSCCEEEEEEECSSSSCEEEEEEEESSCCCCEEEECT
T ss_pred cCCCCCCCcceEEEcCCCcEEEEEEEcCCCCCCceEEccH
Confidence 134789999889888877776444566666653
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=89.76 E-value=5.1 Score=44.19 Aligned_cols=198 Identities=11% Similarity=-0.033 Sum_probs=97.2
Q ss_pred EECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeC--CCCeE
Q psy10286 506 VMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEP--DKDQW 583 (748)
Q Consensus 506 ~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~--~~~~W 583 (748)
..+|+..++++..+ ..+..|+..++.-..+..-+.. ...+.+...+++...+..++......++..+. ....-
T Consensus 30 ~~DG~~la~~s~~~----g~~~lw~~~~g~~~~lt~~~~~-~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~ 104 (582)
T 3o4h_A 30 VVDGDKLLVVGFSE----GSVNAYLYDGGETVKLNREPIN-SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ 104 (582)
T ss_dssp EETTTEEEEEEEET----TEEEEEEEETTEEEECCSSCCS-EECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE
T ss_pred CCCCCeEEEEEccC----CceeEEEEcCCCcEeeeccccc-ccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc
Confidence 34666556555311 1344444445544444332211 11111222335555444322223456777877 44332
Q ss_pred EEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc
Q psy10286 584 RIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI 662 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 662 (748)
.+...+..+ ..+... ++.++++.+.. +.+..||..+.+-..+...+. ...+..-+|+.+++++.+...
T Consensus 105 -~l~~~~~~~--~~~~s~dg~~~~~~s~~~-----~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~ 173 (582)
T 3o4h_A 105 -RLEAVKPMR--ILSGVDTGEAVVFTGATE-----DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG 173 (582)
T ss_dssp -ECTTSCSBE--EEEEEECSSCEEEEEECS-----SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred -cccCCCCce--eeeeCCCCCeEEEEecCC-----CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence 333322222 223333 44555555442 234477888887766654333 223333466666655543221
Q ss_pred cccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 663 FLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
...++.+|..+.+++.+..-+.. ....+.. +|+.++.+..++ ...++++|+.+++.+
T Consensus 174 -~~~i~~~d~~~g~~~~l~~~~~~--~~~~~~SpDG~~l~~~~~~~---~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 174 -RVSLFTSNLSSGGLRVFDSGEGS--FSSASISPGMKVTAGLETAR---EARLVTVDPRDGSVE 231 (582)
T ss_dssp -EEEEEEEETTTCCCEEECCSSCE--EEEEEECTTSCEEEEEECSS---CEEEEEECTTTCCEE
T ss_pred -CeEEEEEcCCCCCceEeecCCCc--cccceECCCCCEEEEccCCC---eeEEEEEcCCCCcEE
Confidence 24699999999988877432211 1222222 565555443322 247999999998877
|
| >1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A* | Back alignment and structure |
|---|
Probab=89.74 E-value=12 Score=39.63 Aligned_cols=147 Identities=11% Similarity=0.085 Sum_probs=82.5
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEE--c----cCCCCCCcceEEEE--ECCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRI--V----KSMQKHRSAGGVIA--FDSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 621 (748)
+++..+|++|+|-| ...|+++.....+.. + +.+|.. .. ++.. .++++|+|=|. .+|
T Consensus 267 Ai~~~~ge~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~Wp~LP~~-iD-Aa~~~~~~g~~~fFKg~-------~~W 330 (450)
T 1su3_A 267 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNG-LE-AAYEFADRDEVRFFKGN-------KYW 330 (450)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSS-CC-EEEEEGGGTEEEEEETT-------EEE
T ss_pred eEEecCCeEEEEeC-------CEEEEEcCCCCcccceehhHhccCCCCC-ee-EEEEEcCCCeEEEEeCC-------EEE
Confidence 45567999999988 456666655443321 1 123322 12 2222 27999999884 688
Q ss_pred EEECCCC--cE-EEcc---CCCCCCcce-eEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEE-----Ecc-CCC-C
Q psy10286 622 RYDPKTD--EW-TSVK---PMLTKRCRL-GVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWK-----MIA-SMN-V 685 (748)
Q Consensus 622 ~yd~~~~--~W-~~~~---~~p~~r~~~-~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-----~~~-~~p-~ 685 (748)
+|+..+- .+ ..+. .+|..-... ++... ++++|+|-| +..|+||..+++-. .+. ..| .
T Consensus 331 ~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG-------~~yw~yd~~~~~~~~gYPk~I~~~fpgi 403 (450)
T 1su3_A 331 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 403 (450)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCC
Confidence 8874321 00 1111 122211122 22233 589999987 68999998754322 111 111 1
Q ss_pred CCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 686 MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 686 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
+..--+++..++++|+|-| +..|.||..+.+=..
T Consensus 404 p~~iDAA~~~~g~~YFFkg-------~~ywr~d~~~~~v~~ 437 (450)
T 1su3_A 404 GHKVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 437 (450)
T ss_dssp CSCCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCCccEEEEcCCeEEEEeC-------CEEEEEECCcceEec
Confidence 1122234456899999987 468999988776544
|
| >3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.65 E-value=3.4 Score=38.28 Aligned_cols=144 Identities=11% Similarity=0.033 Sum_probs=79.6
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCC---CeEEEc----cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDK---DQWRIV----KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~---~~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
+++..+|++|+|-| +.+|+++... +.=..+ +.+|. ...++....++++|+|-|. ..|+
T Consensus 10 A~~~~~g~~~fFkg-------~~~w~~~~~~~~~gyP~~I~~~w~glP~-~iDAa~~~~~g~~yfFkg~-------~yw~ 74 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------RWFWRVRNNQVMDGYPMPIGQFWRGLPA-SINTAYERKDGKFVFFKGD-------KHWV 74 (196)
T ss_dssp EEEEETTEEEEEET-------TEEEEEETTEECTTCSEEHHHHSTTCCS-SCCEEEECTTSCEEEEETT-------EEEE
T ss_pred EEEEcCCEEEEEEC-------CEEEEEECCccCCCCceEhhHhccCCCC-CccEEEEeCCCcEEEecCC-------EEEE
Confidence 34467999999988 5677775431 000112 13343 2222222247889999884 6899
Q ss_pred EECCCCcE---EEccC----CCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----ccCC-CCCC
Q psy10286 623 YDPKTDEW---TSVKP----MLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----IASM-NVMR 687 (748)
Q Consensus 623 yd~~~~~W---~~~~~----~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~~-p~~r 687 (748)
|+..+... ..+.. +|..+.. ++... ++++|++-| +..|+||..+++-.. +... ..+.
T Consensus 75 ~~~~~~~~gyPk~I~~~~~glP~~~ID-AA~~~~~~g~~yfFkG-------~~yw~yd~~~~~v~~gyPk~i~~~~gip~ 146 (196)
T 3c7x_A 75 FDEASLEPGYPKHIKELGRGLPTDKID-AALFWMPNGKTYFFRG-------NKYYRFNEELRAVDSEYPKNIKVWEGIPE 146 (196)
T ss_dssp EETTEECTTCSEEGGGTCBSCCSSCCS-EEEEETTTTEEEEEET-------TEEEEEETTTTEECTTCSEEGGGSBTCCS
T ss_pred EeCCcccCCCCeEhhhcCCCCCCCccc-EEEEEccCCEEEEEEC-------CEEEEEeCCcccccCCCCccHHHCCCcCC
Confidence 98542110 12222 3322222 23322 689999987 678999987754221 1111 1112
Q ss_pred cceEEEEE-CC-EEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 688 SRVALVAN-MG-KLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 688 ~~~~~~~~-~~-~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.-.++... ++ ++|+|-| +..+.||..+.+
T Consensus 147 ~idaAf~~~~~~~~YfFkg-------~~y~r~d~~~~~ 177 (196)
T 3c7x_A 147 SPRGSFMGSDEVFTYFYKG-------NKYWKFNNQKLK 177 (196)
T ss_dssp SCSEEEECTTSSEEEEEET-------TEEEEEETTTTE
T ss_pred CcceeEEecCCCEEEEEEC-------CEEEEEECCcce
Confidence 22333333 44 9999977 468999987764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.61 E-value=18 Score=36.24 Aligned_cols=176 Identities=11% Similarity=0.084 Sum_probs=86.2
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++..++.|+.+ ..+..||..+.+-...........-.+++.. ++.+++.|+.+ ..+..||..+..-..
T Consensus 138 ~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d-----g~i~iwd~~~~~~~~- 206 (343)
T 3lrv_A 138 NTEYFIWADNR-----GTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD-----GILDVYNLSSPDQAS- 206 (343)
T ss_dssp -CCEEEEEETT-----CCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT-----SCEEEEESSCTTSCC-
T ss_pred CCCEEEEEeCC-----CcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC-----CEEEEEECCCCCCCc-
Confidence 45677778754 3588899888765443322222222233333 77888888865 468889988765220
Q ss_pred cCCCC-CCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE-EccCCCCCCcce--eEEEE--CCEEEEEecc
Q psy10286 587 KSMQK-HRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT-SVKPMLTKRCRL--GVAAL--NNKIYVCGGY 658 (748)
Q Consensus 587 ~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~--~~~~~--~~~i~v~GG~ 658 (748)
..+.. ....-..+.+ ++..++.|+ ++ .+..||..+.+-. .+.......... .++.+ +++.++.|+.
T Consensus 207 ~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 207 SRFPVDEEAKIKEVKFADNGYWMVVEC-DQ-----TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp EECCCCTTSCEEEEEECTTSSEEEEEE-SS-----BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred cEEeccCCCCEEEEEEeCCCCEEEEEe-CC-----eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence 01111 1111122222 566666666 22 6888998765321 111110010111 12333 4666666543
Q ss_pred -CCCccccEEEEEeCCCCcEEE----ccCCCC---CCcceEEEEECCEEEEEe
Q psy10286 659 -DGAIFLQSVEMYDPITDEWKM----IASMNV---MRSRVALVANMGKLWAIG 703 (748)
Q Consensus 659 -~~~~~~~~v~~yd~~~~~W~~----~~~~p~---~r~~~~~~~~~~~l~v~G 703 (748)
++ .-.+|.|+.....|.. .-.+.. ......++..++.+.++-
T Consensus 281 ~d~---~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 281 ESN---SLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp TTT---EEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred CCC---cEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEE
Confidence 22 1244555557778987 112221 222333444567766653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.15 Score=53.14 Aligned_cols=182 Identities=13% Similarity=0.145 Sum_probs=74.1
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC-
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD- 581 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 581 (748)
++.++.||+.+. + ..++.+|..+++ |+... .. ...+.+..++.+|+.|+.+ ..++.+|..++
T Consensus 6 ~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~~--~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~ 70 (369)
T 2hz6_A 6 TLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--DP--VLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNE 70 (369)
T ss_dssp --CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--CC--SCCCC-----CCEEECTTT-----CCEEEC-----C
T ss_pred eeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--CC--ceecceEcCCCEEEEeCCC-----CEEEEEECCCCc
Confidence 334667776443 2 368999988764 87643 11 1122334567788876543 35888998654
Q ss_pred -eEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEECCEEEEEec
Q psy10286 582 -QWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 582 -~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG 657 (748)
.|+.-...+... ..+.+. .++.+|+ |+. ...++.+|+.+++ |+.-.... . ..+..++.+|+ |+
T Consensus 71 ~~w~~~~~~~~~~-~~sp~~~~~~~v~~-g~~-----dg~v~a~D~~tG~~~w~~~~~~~-~----~~~p~~~~v~~-~~ 137 (369)
T 2hz6_A 71 GLTKLPFTIPELV-QASPCRSSDGILYM-GKK-----QDIWYVIDLLTGEKQQTLSSAFA-D----SLSPSTSLLYL-GR 137 (369)
T ss_dssp CSEECSCCHHHHH-TTCSCC-----CCC-CEE-----EEEEEEECCC---------------------------EEE-EE
T ss_pred eeeeeeccCcccc-ccCceEecCCEEEE-EeC-----CCEEEEEECCCCcEEEEecCCCc-c----cccccCCEEEE-Ee
Confidence 465432211101 111122 3555553 332 2358899988654 65432110 0 11123444554 43
Q ss_pred cCCCccccEEEEEeCCCCc--EEEc-cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 658 YDGAIFLQSVEMYDPITDE--WKMI-ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~--W~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
.+ ..++.+|+.+.+ |+.- .....+.... -...++.+|+.. .+ ..++.+|+.+++ |+.
T Consensus 138 ~d-----g~v~a~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~-~d-----g~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 138 TE-----YTITMYDTKTRELRWNATYFDYAASLPED-DVDYKMSHFVSN-GD-----GLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EE-----EEEECCCSSSSSCCCEEEEEEECCBCCCC-CTTCCCCEEEEE-TS-----CEEEEECTTTCCEEEEE
T ss_pred cC-----CEEEEEECCCCCEEEeEecccccCccccC-CccccceEEEEC-CC-----CEEEEEECCCCcEEEEe
Confidence 22 468888887654 7642 1110000000 001125566532 21 358888887764 664
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=89.11 E-value=20 Score=35.99 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE-ccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI-VKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++.+.+.|+.+ ..+..||..+.+... +.. ....-.+++.. ++..++.||.++ .+..||.....-..
T Consensus 87 ~~~~l~s~s~D-----~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~~~~~~~~ 154 (343)
T 2xzm_R 87 ENCFAISSSWD-----KTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAER-----EIKLWNILGECKFS 154 (343)
T ss_dssp STTEEEEEETT-----SEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETTS-----CEEEEESSSCEEEE
T ss_pred CCCEEEEEcCC-----CcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCCC-----EEEEEeccCCceee
Confidence 56667777755 468889988765422 111 11111122222 566667777643 57788876443333
Q ss_pred ccCCCCCCcceeEEEEC------------CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCE
Q psy10286 633 VKPMLTKRCRLGVAALN------------NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGK 698 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~------------~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 698 (748)
............++.+. +..++.||.+ ..+.+||.....-..+.. .......+.+ +++
T Consensus 155 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~~~~~---h~~~v~~~~~s~~g~ 226 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNFQIRYTFKA---HESNVNHLSISPNGK 226 (343)
T ss_dssp CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTTEEEEEEEC---CSSCEEEEEECTTSS
T ss_pred eecccCCCceeeeeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCCceeEEEcC---ccccceEEEECCCCC
Confidence 22211112222222221 1466677654 367788843321111111 1111222222 566
Q ss_pred EEEEeCCCCCCCCCeEEEEeC
Q psy10286 699 LWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 699 l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.++.||.++ .+.+||.
T Consensus 227 ~l~sgs~dg-----~v~iwd~ 242 (343)
T 2xzm_R 227 YIATGGKDK-----KLLIWDI 242 (343)
T ss_dssp EEEEEETTC-----EEEEEES
T ss_pred EEEEEcCCC-----eEEEEEC
Confidence 777777543 4666666
|
| >3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A | Back alignment and structure |
|---|
Probab=89.07 E-value=11 Score=38.75 Aligned_cols=147 Identities=8% Similarity=0.021 Sum_probs=82.4
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE--EEc----cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW--RIV----KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
+++..+|++|+|-| +.+|+++.....- ..+ +.+|. ... ++... ++++|+|-|. ..|
T Consensus 185 Av~~~~g~~~fFkg-------~~~Wr~~~~~~~~~p~~I~~~wpgLP~-~iD-Aa~~~~~~g~~~fFkg~-------~yW 248 (365)
T 3ba0_A 185 AVTTVGNKIFFFKD-------RFFWLKVSERPKTSVNLISSLWPTLPS-GIE-AAYEIEARNQVFLFKDD-------KYW 248 (365)
T ss_dssp CEEEETTEEEEEET-------TEEEECCSSCCCCCEEEHHHHCSSCCS-SCC-EEEEEGGGTEEEEEETT-------EEE
T ss_pred eEEEcCCeEEEEeC-------CEEEEEcCCCccCCccchhhhccCCCC-Ccc-EEEEecCCCEEEEEeCC-------EEE
Confidence 34557999999977 4566665443221 111 23342 222 23333 7999999874 688
Q ss_pred EEECCCCc--E-EEccC--CCCCC-cceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----ccC-CC-CC
Q psy10286 622 RYDPKTDE--W-TSVKP--MLTKR-CRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----IAS-MN-VM 686 (748)
Q Consensus 622 ~yd~~~~~--W-~~~~~--~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~~~-~p-~~ 686 (748)
+|+..... + ..+.. +|..- .--++... ++++|++-| +..|+||..+++-.. +.. .| .+
T Consensus 249 r~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~~~~yfFkG-------~~yw~yd~~~~~v~~gyPk~I~~~f~g~p 321 (365)
T 3ba0_A 249 LISNLRPEPNYPKSIHSFGFPNFVKKIDAAVFNPRFYRTYFFVD-------NQYWRYDERRQMMDPGYPKLITKNFQGIG 321 (365)
T ss_dssp ECSTTSCTTTCSEETTTTTCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCCCHHHHSTTCC
T ss_pred EEcCCcccCCCCceeeeccCCCCCCCcCEEEEeCCCCEEEEEEC-------CEEEEEeCCcceecCCCCcchhhcCCCCC
Confidence 88754321 1 12322 23211 11233333 589999987 689999987654221 100 11 12
Q ss_pred CcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 687 RSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 687 r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
..--++... ++++|+|=| +..|.||..+.+-..
T Consensus 322 ~~iDaA~~~~~g~~YfFkg-------~~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 322 PKIDAVFYSKNKYYYFFQG-------SNQFEYDFLLQRITK 355 (365)
T ss_dssp SSCSEEEEETTTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CccceeeEecCCcEEEEeC-------CEEEEEECCccEEec
Confidence 222334444 899999977 468999998876554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=89.04 E-value=22 Score=40.54 Aligned_cols=234 Identities=12% Similarity=-0.019 Sum_probs=112.5
Q ss_pred ceEEEEeCCCC-ceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeE--EEccCCCCCcceeEE
Q psy10286 477 STVEVFDPLVG-RWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVW--NKVSPMCFKRSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~~~~~~~r~~~~~ 551 (748)
..++..|..++ +. ++.. ......+.+.. ++ .||..- .+.......+++.+..+..- ..+-.-+......+.
T Consensus 201 ~~l~v~dl~~g~~~--l~~~-~~~~~~~~~WspDg~~l~y~~-~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 276 (751)
T 2xe4_A 201 YTIEFKRISDPSQT--IADK-VSGTNGEIVWGPDHTSLFYVT-KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFM 276 (751)
T ss_dssp EEEEEEETTCTTCC--CCCC-EEEECSCCEECSSTTEEEEEE-ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEE
T ss_pred EEEEEEECCCCCEe--CCcc-ccCceeeEEEecCCCEEEEEE-ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEE
Confidence 46888998887 52 1110 01111111221 33 444432 22222234688888876531 111111222222222
Q ss_pred EEE-CC-EEEEEeCCCCCCCCceEEEEeCCCC--eE--EEccCCCCCCcceEEE-EECCEEEEEccCCCCcccCeEEEEE
Q psy10286 552 AAL-ND-KLYVCGGYDGVSSLNTVECYEPDKD--QW--RIVKSMQKHRSAGGVI-AFDSYVYALGGHDGLSIFDSVERYD 624 (748)
Q Consensus 552 ~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~--~W--~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd 624 (748)
... +| .|++..... ..+.++.+|..+. .+ +.+.+-... ..++.. ..++.+|+..-.++ .....++.+|
T Consensus 277 ~~SpDg~~l~~~~~~~---~~~~l~~~d~~~~~~~~~~~~l~~~~~~-~~~s~~~~~g~~l~~~t~~~~-a~~~~L~~~d 351 (751)
T 2xe4_A 277 YKAADTNTLCIGSQSP---ETAEVHLLDLRKGNAHNTLEIVRPREKG-VRYDVQMHGTSHLVILTNEGG-AVNHKLLIAP 351 (751)
T ss_dssp EECTTSSEEEEEEECS---SCEEEEEEESSSCTTCCCEEESSCCCTT-CCEEEEEETTTEEEEEECTTT-CTTCEEEEEE
T ss_pred EECCCCCEEEEEecCC---CCceEEEEECCCCCCCceeEEeecCCCC-ceEEEeeeeCCEEEEEeCCCC-CCCcEEEEEc
Confidence 222 55 454444321 2468899998875 45 555432111 112222 23778888865431 1235799999
Q ss_pred CCC-CcEEE-ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeC-------CCCc-EEEccCCCCCCcceEEEE
Q psy10286 625 PKT-DEWTS-VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDP-------ITDE-WKMIASMNVMRSRVALVA 694 (748)
Q Consensus 625 ~~~-~~W~~-~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~-------~~~~-W~~~~~~p~~r~~~~~~~ 694 (748)
..+ ..|+. +-+-.......+....++.|++....++ ...++++|+ .+.. ...+. ++.. .+....
T Consensus 352 ~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g---~~~l~~~dl~~~~~~~~~g~~~~~l~-l~~~--~~~~~~ 425 (751)
T 2xe4_A 352 RGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG---LTRIWTMMADSQDGVFKAGTGLREVV-MEEP--IFTVHL 425 (751)
T ss_dssp TTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT---EEEEEEEECCTTTSCCCTTTCCEECC-CCCS--SCEEEE
T ss_pred CCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC---EEEEEEEecccccccccCCccceEEC-CCCc--eeEEEe
Confidence 876 67875 4221111122333444778877765443 457889986 3433 34442 2222 222111
Q ss_pred -------EC-CEEEEE-eCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 695 -------NM-GKLWAI-GGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 695 -------~~-~~l~v~-GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.+ +.+++. .+.. .-.+++.||+.+++.+.+.
T Consensus 426 ~~~~~~~~~~~~l~~~~ss~~---~P~~~~~~d~~~~~~~~l~ 465 (751)
T 2xe4_A 426 VESQMLEYEEPTFRMEYSSLA---TPNTWFDVSPQDHSRTAVK 465 (751)
T ss_dssp CGGGCCCTTCSCEEEEEEETT---EEEEEEEECTTTCCEEEEE
T ss_pred ccCcccCCCCCEEEEEEeCCC---CCCEEEEEECCCCcEEEEe
Confidence 12 333333 2221 2246889999888776554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=89.01 E-value=13 Score=39.16 Aligned_cols=100 Identities=15% Similarity=-0.032 Sum_probs=54.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCC----CCCCCCeEEEEECCCCeEEEccCCC-CC----
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYN----GSERLSTVEEFDPVRRVWNKVSPMC-FK---- 545 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~~~~~~-~~---- 545 (748)
+.+..+|+.+++-. ..++..... .+++- ++++||.--.. .+...+.+.++|+.+++-...-+++ .+
T Consensus 99 ~~VsVID~~t~~vv--~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRIL--GMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEE--EEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEE--EEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 68999999887543 222222222 33333 55788864110 0112357999999998643221122 11
Q ss_pred -cceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 546 -RSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 546 -r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
..-+.++.. ++++|+..-. ..+.+.++|+.+++=
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kv 212 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTF 212 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEE
T ss_pred CCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeE
Confidence 112233333 4578886421 136789999988764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=88.04 E-value=23 Score=35.50 Aligned_cols=213 Identities=16% Similarity=0.210 Sum_probs=108.4
Q ss_pred cceEEEEeCCCCceEEccCCCc------cc-ceeEEEE----ECCEEEEEccC----C--CC--CCCCeEEEEECC---C
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSM------LR-SRVGVAV----MKNRLYAFGGY----N--GS--ERLSTVEEFDPV---R 533 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~------~r-~~~~~~~----~~~~iyv~GG~----~--~~--~~~~~v~~yd~~---t 533 (748)
...+..+|+..+.-..+ ..+. +. .-.++.+ -+++|+++.-. . +. ...+.+.+||+. +
T Consensus 34 ~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~t 112 (334)
T 2p9w_A 34 KGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSEN 112 (334)
T ss_dssp TTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTT
T ss_pred CCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCC
Confidence 35788899986654444 2221 12 2244555 25788886211 0 11 124679999988 4
Q ss_pred C--eEEE-ccCCCCC-------cc-ee-EEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCe---EEEccCCCCCCcce-
Q psy10286 534 R--VWNK-VSPMCFK-------RS-AV-GAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQ---WRIVKSMQKHRSAG- 596 (748)
Q Consensus 534 ~--~W~~-~~~~~~~-------r~-~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~r~~~- 596 (748)
+ .|.. ++..... +. .. .+++- +|.+||.|... ...+++++|.... |-...+....+.+.
T Consensus 113 g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~----~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~n 188 (334)
T 2p9w_A 113 SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALG----MPAIARVSADGKTVSTFAWESGNGGQRPGYS 188 (334)
T ss_dssp CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEES----SCEEEEECTTSCCEEEEEECCCCSSSCCSCS
T ss_pred CCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCC----CCeEEEEeCCCCEEeeeeecCCCcccccCcc
Confidence 4 3543 2211111 22 12 23332 78999976532 1569999998653 54333323334443
Q ss_pred EEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcE--EEcc--CCC-CCCccee--EEEECCEEEEEeccCCCccccEE
Q psy10286 597 GVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEW--TSVK--PML-TKRCRLG--VAALNNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 597 ~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~--~~p-~~r~~~~--~~~~~~~i~v~GG~~~~~~~~~v 667 (748)
+++.. +..|++..+ . ..+++||..+... ..+. ... .....-+ ....+|++++++.. .+.+
T Consensus 189 GIv~~pdg~~Liv~~~-~-----g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~-----~~~~ 257 (334)
T 2p9w_A 189 GITFDPHSNKLIAFGG-P-----RALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR-----APYA 257 (334)
T ss_dssp EEEEETTTTEEEEESS-S-----SSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE-----TTEE
T ss_pred eEEEeCCCCEEEEEcC-C-----CeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC-----CCCE
Confidence 45555 446666655 2 3689999875432 1111 000 0011112 22368888666532 1344
Q ss_pred EEEeCCCCcEEEc---cCCCC---CCcceEEEE----ECCEEEEEeCC
Q psy10286 668 EMYDPITDEWKMI---ASMNV---MRSRVALVA----NMGKLWAIGGY 705 (748)
Q Consensus 668 ~~yd~~~~~W~~~---~~~p~---~r~~~~~~~----~~~~l~v~GG~ 705 (748)
+.+-...+ |... +..|. ++.....+. .+++||++.++
T Consensus 258 ~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~~iYvv~~~ 304 (334)
T 2p9w_A 258 ISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQGLYAVSAF 304 (334)
T ss_dssp EEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEEEEEEEECC
T ss_pred EEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCCeEEEEeee
Confidence 55544444 8764 22232 233333333 57999999765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=87.98 E-value=3.3 Score=43.69 Aligned_cols=143 Identities=13% Similarity=0.180 Sum_probs=69.2
Q ss_pred EEEEeCCCCCCCCceEEEEeCCCCe---EEE--ccCCCC-CCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 558 LYVCGGYDGVSSLNTVECYEPDKDQ---WRI--VKSMQK-HRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 558 iyv~GG~~~~~~~~~~~~yd~~~~~---W~~--~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
+++.|+.+ ..+..||..+.. +.. ...... ...-.+++.. ++.+++.|+.+ ..+..||..+..
T Consensus 196 ~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d-----g~i~i~d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDD-----HTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD-----QKLMIWDTRNNN 265 (430)
T ss_dssp EEEEECTT-----SCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCSC
T ss_pred eEEEEeCC-----CeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC-----CeEEEEECCCCC
Confidence 67777754 357888887621 211 111111 1111223332 56677777764 468899988652
Q ss_pred -EEEccCCCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE---CCEEEEE
Q psy10286 630 -WTSVKPMLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN---MGKLWAI 702 (748)
Q Consensus 630 -W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~ 702 (748)
...+..+........++.+ +..+++.|+.+ ..|.+||..+.. ..+..+.........+.. +..+++.
T Consensus 266 ~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d-----g~v~vwd~~~~~-~~~~~~~~h~~~v~~i~~sp~~~~~l~s 339 (430)
T 2xyi_A 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD-----KTVALWDLRNLK-LKLHSFESHKDEIFQVQWSPHNETILAS 339 (430)
T ss_dssp SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT-----SEEEEEETTCTT-SCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC-----CeEEEEeCCCCC-CCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence 1111111111122233333 33488888865 468899987632 011111111112222222 3357777
Q ss_pred eCCCCCCCCCeEEEEeCCC
Q psy10286 703 GGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~ 721 (748)
||.++ .+.+||..+
T Consensus 340 ~~~d~-----~i~iwd~~~ 353 (430)
T 2xyi_A 340 SGTDR-----RLHVWDLSK 353 (430)
T ss_dssp EETTS-----CCEEEEGGG
T ss_pred EeCCC-----cEEEEeCCC
Confidence 77543 467777655
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=86.39 E-value=32 Score=35.39 Aligned_cols=211 Identities=10% Similarity=0.043 Sum_probs=113.7
Q ss_pred ceEeecCCCCceeeccc-ccccceEE-e-cccccccCCCccceEEEEeCCCCceEEccC--CCcccceeEEEEECCEEEE
Q psy10286 439 TVEVFDPLVGRWQMAEE-ETLSNAVI-S-TKSCLTKAGDSLSTVEVFDPLVGRWQMAEA--MSMLRSRVGVAVMKNRLYA 513 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~-~~~~~~~~-~-~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~--~~~~r~~~~~~~~~~~iyv 513 (748)
.+..+++.......+.. .....++. . ..+.++........++++++.....+.+.. +..| .+.++...++.||+
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p-~glavd~~~g~lY~ 175 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP-GGLAVDWVHDKLYW 175 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC-CCEEEETTTTEEEE
T ss_pred cceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc-cEEEEEeCCCeEEE
Confidence 45666666555544332 11122222 1 234455444445678899988776655422 2222 22232223789998
Q ss_pred EccCCCCCCCCeEEEEECCCCeEEEcc--CCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC
Q psy10286 514 FGGYNGSERLSTVEEFDPVRRVWNKVS--PMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 514 ~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
.-.. .+.++++++....-..+. .+..| .++++. ++.||+.--. ....++++++....-+.+..-
T Consensus 176 ~d~~-----~~~I~~~~~dg~~~~~l~~~~l~~P---~giavdp~~g~ly~td~~----~~~~I~r~~~dG~~~~~~~~~ 243 (386)
T 3v65_B 176 TDSG-----TSRIEVANLDGAHRKVLLWQSLEKP---RAIALHPMEGTIYWTDWG----NTPRIEASSMDGSGRRIIADT 243 (386)
T ss_dssp EETT-----TTEEEECBTTSCSCEEEECSSCSCE---EEEEEETTTTEEEEEECS----SSCEEEEEETTSCSCEEEECS
T ss_pred EcCC-----CCeEEEEeCCCCceEEeecCCCCCC---cEEEEEcCCCeEEEeccC----CCCEEEEEeCCCCCcEEEEEC
Confidence 7542 247888887754333221 22222 234443 6889987421 135799999876543333211
Q ss_pred CCCCcceEEEE--ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEE
Q psy10286 590 QKHRSAGGVIA--FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 590 ~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 667 (748)
.. ..-.++++ .+++||+.-.. ...|+++|+....-..+.... ...-.++++.++.||+..-. .+.|
T Consensus 244 ~~-~~PnGlavd~~~~~lY~aD~~-----~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td~~-----~~~V 311 (386)
T 3v65_B 244 HL-FWPNGLTIDYAGRRMYWVDAK-----HHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWH-----TKSI 311 (386)
T ss_dssp SC-SCEEEEEEEGGGTEEEEEETT-----TTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEETT-----TTEE
T ss_pred CC-CCeeeEEEeCCCCEEEEEECC-----CCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEeeCC-----CCeE
Confidence 11 11123444 37899998643 357999998754322222111 12235667788999998632 3578
Q ss_pred EEEeCCC
Q psy10286 668 EMYDPIT 674 (748)
Q Consensus 668 ~~yd~~~ 674 (748)
.++|..+
T Consensus 312 ~~~~~~~ 318 (386)
T 3v65_B 312 NSANKFT 318 (386)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 8888544
|
| >1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=52 Score=37.67 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=122.8
Q ss_pred CceEEccCCCcccceeEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-----CcceeEEEEE---C
Q psy10286 487 GRWQMAEAMSMLRSRVGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-----KRSAVGAAAL---N 555 (748)
Q Consensus 487 ~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-----~r~~~~~~~~---~ 555 (748)
.+|+.+.+.... .-.++++. .+.+|+ |+.. ..+++-+-.-.+|+.+...+. .+.-+++++. .
T Consensus 4 ~~W~~~~~~~~g-~i~~i~~~p~~~~~~~a-~~~~-----ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~ 76 (789)
T 1sqj_A 4 YEFKNVAIGGGG-YITGIVAHPKTKDLLYA-RTDI-----GGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP 76 (789)
T ss_dssp CEEEECCCCBCS-CEEEEEECSSSTTCEEE-EESS-----SCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE
T ss_pred ccceEccCCCCC-cEEEEEECCCCCCEEEE-EecC-----CCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCC
Confidence 468888763322 22333333 245666 3322 247888878889999865331 2334444443 2
Q ss_pred CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC-CCC-----CC-cceEEEEE---CCEEEEEccCCCCcccCeEEEEEC
Q psy10286 556 DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS-MQK-----HR-SAGGVIAF---DSYVYALGGHDGLSIFDSVERYDP 625 (748)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-~~~-----~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~ 625 (748)
+.+|+..|.........+++=+-.-.+|+.+.. ++. .| ..+.+++. .+.+|+ |.. ...+++=+-
T Consensus 77 ~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~-g~~-----~~gl~~S~D 150 (789)
T 1sqj_A 77 DRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWM-GTR-----TEGIWKSSD 150 (789)
T ss_dssp EEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEE-ECS-----SSCEEEESS
T ss_pred CEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEE-Eec-----cCCEEEECC
Confidence 578887664221111455555556678998853 111 12 22345544 356666 332 134666555
Q ss_pred CCCcEEEccCCCC---CCcceeEEEE----CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCC-----------
Q psy10286 626 KTDEWTSVKPMLT---KRCRLGVAAL----NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR----------- 687 (748)
Q Consensus 626 ~~~~W~~~~~~p~---~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r----------- 687 (748)
.-.+|+.+...|. .-.......+ .+.||+..... ..+++=.-.-.+|+.+..++...
T Consensus 151 gG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-----~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~ 225 (789)
T 1sqj_A 151 RAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-----QGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDK 225 (789)
T ss_dssp TTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-----TCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTC
T ss_pred CCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-----CeEEEEcCCCcCcccCCCCcCccccccccccCcc
Confidence 6678999876441 1122333333 24677654321 23443333456899987554322
Q ss_pred -----cceEEEEE--CCEEEEEeCCCC---CCCCCeEEEEeCCCCceEecCCCCC
Q psy10286 688 -----SRVALVAN--MGKLWAIGGYDG---VSNLPTVEVYDPSTDSWAFVAPMCA 732 (748)
Q Consensus 688 -----~~~~~~~~--~~~l~v~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~~~ 732 (748)
..+.++.. ++.||+..+... ......+++.+-...+|+.+.+.|.
T Consensus 226 ~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~~~~~~~~ 280 (789)
T 1sqj_A 226 KPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWDDITPRVG 280 (789)
T ss_dssp CCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEEECCCCTT
T ss_pred cccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceEECcCCCC
Confidence 11443332 789998743211 0123468888888899999887554
|
| >1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A | Back alignment and structure |
|---|
Probab=86.04 E-value=23 Score=33.27 Aligned_cols=145 Identities=14% Similarity=0.132 Sum_probs=79.3
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe-E--EEcc----CCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ-W--RIVK----SMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W--~~~~----~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 621 (748)
+++..+|++|+|-| +.+|+++..... . ..+. .+|. ...++... .++++|+|-|. ..|
T Consensus 35 Ai~~~~g~~~fFkg-------~~~Wr~~~~~~~~~~P~~I~~~wp~lp~-~IDAA~~~~~~~k~yfFkG~-------~yW 99 (218)
T 1gen_A 35 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPE-KIDAVYEAPQEEKAVFFAGN-------EYW 99 (218)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCS-CCSEEEEETTTTEEEEEETT-------EEE
T ss_pred EEEeCCCcEEEEEC-------CEEEEEeCCCCccCCCEEHHHhcCCCCC-CccEEEEECCCCEEEEEeCC-------EEE
Confidence 45557999999988 456766654421 1 1121 2332 22222222 26899999884 789
Q ss_pred EEECCCCc---EEEccC--CCCCC-cceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----cc-C-CCCC
Q psy10286 622 RYDPKTDE---WTSVKP--MLTKR-CRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----IA-S-MNVM 686 (748)
Q Consensus 622 ~yd~~~~~---W~~~~~--~p~~r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~~-~-~p~~ 686 (748)
+||..+.. =..+.. +|..- .--++... ++++|++-| +..|.||..+++-.. +. . +..+
T Consensus 100 ~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG-------~~ywr~d~~~~~v~~gyPr~i~~~w~g~p 172 (218)
T 1gen_A 100 IYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAIP 172 (218)
T ss_dssp EEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSCC
T ss_pred EEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC-------CEEEEEECccccccCCCCcchhhccCCCC
Confidence 99852100 011111 22111 12233332 689999987 689999987764221 11 1 1112
Q ss_pred CcceEEEEEC--CEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 687 RSRVALVANM--GKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 687 r~~~~~~~~~--~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..-.++...+ +.+|+|-| +..|.||..+..
T Consensus 173 ~~idaAf~~~~~g~~YfFkg-------~~y~~~~~~~~~ 204 (218)
T 1gen_A 173 DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLK 204 (218)
T ss_dssp SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEE
T ss_pred CCCCEEEEEcCCCcEEEEEC-------CEEEEEECCcee
Confidence 2223444444 89999977 467888876554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.03 E-value=35 Score=35.39 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=79.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++.+++.|+.+ ..+..||..+.+-...-..+ ....-.+++.. ++..++.|+.+ ..+..||..+.+...
T Consensus 181 ~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 181 EKSLLVALTNL-----SRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNVLIR 250 (437)
T ss_dssp SCEEEEEEETT-----SEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCCEEEEEeCC-----CeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCccEEE
Confidence 46777777754 47889999887543221111 11122222222 67777888765 468899988866433
Q ss_pred ccCCCCCCcceEEEEE-----CCEEEEEccCCCCcccCeEEEEECCCCcEEEc-cC----------CC------------
Q psy10286 586 VKSMQKHRSAGGVIAF-----DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-KP----------ML------------ 637 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~-----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~----------~p------------ 637 (748)
.-..+....-.+++.. ++.+++.|+.++ .+..||..+.+-... .. .|
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT-----FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCG 325 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE-----EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCC
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCCC-----cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecc
Confidence 2111211111122111 345666666533 588888877653221 10 00
Q ss_pred --CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 638 --TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 638 --~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
....-.+++..++..++.||.+ ..|.+||..+.+
T Consensus 326 ~~~~~~v~~l~~~~~~~l~s~~~d-----~~i~~wd~~~~~ 361 (437)
T 3gre_A 326 IRSLNALSTISVSNDKILLTDEAT-----SSIVMFSLNELS 361 (437)
T ss_dssp CCSGGGGCCEEEETTEEEEEEGGG-----TEEEEEETTCGG
T ss_pred cccCCceEEEEECCceEEEecCCC-----CeEEEEECCCcc
Confidence 0011123344478888888865 367788876654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=85.78 E-value=35 Score=35.19 Aligned_cols=278 Identities=12% Similarity=0.007 Sum_probs=130.4
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeec-ccccccceEEecc-cccccCC---------CccceEEEEeCCCCce
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EEETLSNAVISTK-SCLTKAG---------DSLSTVEVFDPLVGRW 489 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~~~~~~~~~~~~-~~~~~~g---------~~~~~~~~yd~~~~~W 489 (748)
++++|+.-.... .....+.++|+.+++-... +........++.+ ..+|... ...+.+..+|+.+.+-
T Consensus 44 ~~~vyV~~~~~~--~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v 121 (386)
T 3sjl_D 44 ARRVYVNDPAHF--AAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP 121 (386)
T ss_dssp TTEEEEEECGGG--CSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEEcCccc--CCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeE
Confidence 567888744211 1125889999988776432 2111122333333 3344432 1245699999999875
Q ss_pred EEccCCCc-cc-----ceeEEEE--ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-------CcceeEEEEE
Q psy10286 490 QMAEAMSM-LR-----SRVGVAV--MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-------KRSAVGAAAL 554 (748)
Q Consensus 490 ~~~~~~~~-~r-----~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-------~r~~~~~~~~ 554 (748)
..--+++. .| .-+.+++ -+.++||.... ..+.+.+.|..+++=...=+.|. ....+.+..-
T Consensus 122 ~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~ 197 (386)
T 3sjl_D 122 TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 197 (386)
T ss_dssp EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----CCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECC
Confidence 33212221 11 1122222 25578886421 23579999999886432212221 1112223333
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEE-EECCEEEEEccCCCCcccCeEEEEECCCCc----
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI-AFDSYVYALGGHDGLSIFDSVERYDPKTDE---- 629 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---- 629 (748)
+|++.++.-..... +. +..+ ....+-..++..+... .-+|+++..-- ...++.+|..++.
T Consensus 198 DG~~~~v~~~~~g~----v~--~~~~---~~~~~~~~~~~~~~~~~~~dG~~~~vs~------~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 198 DGSLAKVAFGTEGT----PE--ITHT---EVFHPEDEFLINHPAYSQKAGRLVWPTY------TGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp TSCEEEEECCSSSC----CE--EEEC---CCCSCTTSCBCSCCEEETTTTEEEEEBT------TSEEEEEECTTSSCEEC
T ss_pred CCCEEEEECCCCCe----EE--Eeec---ceeccccccccccceeEcCCCcEEEEeC------CCEEEEEECCCCcceee
Confidence 55554443211111 10 1000 1111111223222221 13555433221 1357777765443
Q ss_pred --EEEccC-------CCCCCcceeEEEECCEEEEEeccC--C--CccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-E
Q psy10286 630 --WTSVKP-------MLTKRCRLGVAALNNKIYVCGGYD--G--AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-N 695 (748)
Q Consensus 630 --W~~~~~-------~p~~r~~~~~~~~~~~i~v~GG~~--~--~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~ 695 (748)
|..... .|......+...-++++|+.-+.+ + ...-+.|+++|.++.+-.. ..+.+..-.++.+ -
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~--~i~vg~~~~~lavs~ 340 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA--KFEMGHEIDSINVSQ 340 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE--EEEEEEEECEEEECS
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE--EEECCCCcceEEECC
Confidence 431110 111222222222368999974321 1 1235789999998876543 3333333334444 3
Q ss_pred CC--EEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 696 MG--KLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 696 ~~--~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
++ .+|+.-+. .++|.+||..+++-..
T Consensus 341 D~~~~ly~tn~~-----~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 341 DEKPLLYALSTG-----DKTLYIHDAESGEELR 368 (386)
T ss_dssp SSSCEEEEEETT-----TTEEEEEETTTCCEEE
T ss_pred CCCeEEEEEcCC-----CCeEEEEECCCCcEEE
Confidence 54 46776442 3579999999887543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=85.61 E-value=31 Score=34.37 Aligned_cols=184 Identities=9% Similarity=0.015 Sum_probs=101.4
Q ss_pred cccccCCCccceEEEEeCCC----CceEEc-c-CCCcccceeEEEE--ECCEEEEEccCCCCCCCCeEEEEECCCCeEEE
Q psy10286 467 SCLTKAGDSLSTVEVFDPLV----GRWQMA-E-AMSMLRSRVGVAV--MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK 538 (748)
Q Consensus 467 ~~~~~~g~~~~~~~~yd~~~----~~W~~~-~-~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 538 (748)
+.++........++++++.. .....+ . .+..| .++++ .++.||+.-.. .+.++++|+....-..
T Consensus 42 ~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~ 113 (316)
T 1ijq_A 42 NRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDSV-----LGTVSVADTKGVKRKT 113 (316)
T ss_dssp TEEEEEETTTTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEEEEEETT-----TTEEEEEETTSSSEEE
T ss_pred CEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCeEEEEECC-----CCEEEEEeCCCCceEE
Confidence 34444434446788888775 222222 1 22222 34444 37899997432 3578899987654333
Q ss_pred cc--CCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCC
Q psy10286 539 VS--PMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHD 612 (748)
Q Consensus 539 ~~--~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 612 (748)
+. .+..| .+.++. ++.||+.... ....++++++....-+.+..... ..-.+++.- +++||+.-..
T Consensus 114 ~~~~~~~~P---~~iavdp~~g~ly~~d~~----~~~~I~~~~~dG~~~~~~~~~~~-~~P~gla~d~~~~~lY~~D~~- 184 (316)
T 1ijq_A 114 LFRENGSKP---RAIVVDPVHGFMYWTDWG----TPAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK- 184 (316)
T ss_dssp EEECTTCCE---EEEEEETTTTEEEEEECS----SSCEEEEEETTSCCEEEEECSSC-SCEEEEEEETTTTEEEEEETT-
T ss_pred EEECCCCCc---ceEEeCCCCCEEEEEccC----CCCeEEEEcCCCCCeEEEEECCC-CCceEEEEeccCCEEEEEECC-
Confidence 22 23222 244443 7899987531 12578999987654443322111 122344443 6899998654
Q ss_pred CCcccCeEEEEECCCCcEEEccCC-CCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVKPM-LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
.+.++++|+....-..+... .....-.++++.++.+|+.-.. .+.|.++|+.+.+
T Consensus 185 ----~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~-----~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 185 ----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTGS 240 (316)
T ss_dssp ----TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETT-----TTEEEEEETTTCC
T ss_pred ----CCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECC-----CCeEEEEeCCCCc
Confidence 35799999875433333221 1122335677778999998632 3688999876543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=85.61 E-value=47 Score=36.54 Aligned_cols=180 Identities=12% Similarity=0.086 Sum_probs=94.9
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc-CC-----CCCcce
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS-PM-----CFKRSA 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~-----~~~r~~ 548 (748)
..+..||..+.+... .+.........+.. ++.+++.||.+ ..+..||..+++....- .. .....-
T Consensus 170 ~~v~lwd~~~~~~~~--~l~~H~~~V~~v~fspdg~~las~s~D-----~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V 242 (611)
T 1nr0_A 170 NTVAIFEGPPFKFKS--TFGEHTKFVHSVRYNPDGSLFASTGGD-----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSV 242 (611)
T ss_dssp SCEEEEETTTBEEEE--EECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred CeEEEEECCCCeEee--eeccccCceEEEEECCCCCEEEEEECC-----CcEEEEECCCCcEeeeeccccccccccCCCE
Confidence 456777766543322 12211112222222 67788888855 36888898876543321 10 111112
Q ss_pred eEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC-CcceEEEEECCEEEEEccCCCCcccCeEEEEECC
Q psy10286 549 VGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 549 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
.+++.. +++.++.||.+ ..+..||..+.+....-..... ......+..++..++.++.++ .+..+|+.
T Consensus 243 ~~v~~spdg~~l~s~s~D-----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~-----~i~~~~~~ 312 (611)
T 1nr0_A 243 FGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG-----FINFVNPE 312 (611)
T ss_dssp EEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC-----CEEEEETT
T ss_pred EEEEECCCCCEEEEEeCC-----CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC-----cEEEEeCC
Confidence 223332 67777888755 4788999988876543222211 112223334666666666543 47778887
Q ss_pred CCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+.+-... +.........+.+ +++.++.|+.+ ..+..+|..+......
T Consensus 313 ~~~~~~~--~~gh~~~v~~l~~spdg~~l~s~s~D-----~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 313 LGSIDQV--RYGHNKAITALSSSADGKTLFSADAE-----GHINSWDISTGISNRV 361 (611)
T ss_dssp TTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEEEC
T ss_pred CCCcceE--EcCCCCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCceeee
Confidence 7653222 1111111222223 67777788765 3678899888765543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=85.13 E-value=13 Score=42.07 Aligned_cols=58 Identities=10% Similarity=-0.153 Sum_probs=31.9
Q ss_pred ceEEEEeCCCCceEEccCCCccc--ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLR--SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS 540 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 540 (748)
..++.+|..+++-..+....... .......-+|+..+++.. ..++.+|..+++...+.
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~g~~~~~~ 150 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNIYYCAHVGKQAIRVV 150 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEEEEESSSSSCCEEEE
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------CeEEEEECCCCceEEEe
Confidence 57889999988776665432211 111111225544444432 36888888776655443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=84.45 E-value=35 Score=35.80 Aligned_cols=245 Identities=13% Similarity=0.068 Sum_probs=118.0
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccc-ccccceEEecc-cccccCC---------CccceEEEEeCCCCce
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE-ETLSNAVISTK-SCLTKAG---------DSLSTVEVFDPLVGRW 489 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~-~~~~~~~~~~~-~~~~~~g---------~~~~~~~~yd~~~~~W 489 (748)
..++|+.-.... . ....+.++|+.+++-...-+ .......++.+ ..+|+.. ...+.+..+|+.+++-
T Consensus 84 ~~~vyV~n~~~~-~-~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHF-A-AITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTT-C-SSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcC-C-CCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 457888754211 1 11689999998876643221 11122333333 3333332 1346799999999875
Q ss_pred EEccCCC-ccc-------ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-------CcceeEEEEE
Q psy10286 490 QMAEAMS-MLR-------SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-------KRSAVGAAAL 554 (748)
Q Consensus 490 ~~~~~~~-~~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-------~r~~~~~~~~ 554 (748)
..--+++ .+| .+..+..-++++||..-. ..+.+.++|..+++=...=+.+. ....+.+..-
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----PAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR 237 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----CCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC
Confidence 3221122 111 122222235678886421 23679999999886432211211 1111222222
Q ss_pred CCEEEEEeCCCCC--------------------------------CCCceEEEEeCCCC------eEEEccCC-------
Q psy10286 555 NDKLYVCGGYDGV--------------------------------SSLNTVECYEPDKD------QWRIVKSM------- 589 (748)
Q Consensus 555 ~~~iyv~GG~~~~--------------------------------~~~~~~~~yd~~~~------~W~~~~~~------- 589 (748)
+|+++++.-..+. .....++..|..++ +|+....-
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 4444433321110 00123555565433 23322110
Q ss_pred CCCCcceEEEEECCEEEEEccCCC--C--cccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC--EEEEEeccCCCc
Q psy10286 590 QKHRSAGGVIAFDSYVYALGGHDG--L--SIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN--KIYVCGGYDGAI 662 (748)
Q Consensus 590 ~~~r~~~~~~~~~~~iyv~GG~~~--~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~--~i~v~GG~~~~~ 662 (748)
|......+...-++++|+.-...+ . ...+.+.++|+.+.+- +...+.++.-++++.- ++ .+|+..+.
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~~I~vg~~P~gia~spDg~~~lyv~n~~---- 391 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER--INKIELGHEIDSINVSQDAEPLLYALSAG---- 391 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEEEEEECEEEECCSSSCEEEEEETT----
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeE--EEEEECCCCcCeEEEccCCCEEEEEEcCC----
Confidence 111111222222578999753211 1 1246899999988753 3333444434444443 34 56666532
Q ss_pred cccEEEEEeCCCCcEE
Q psy10286 663 FLQSVEMYDPITDEWK 678 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~ 678 (748)
.++|.++|..+.+-.
T Consensus 392 -s~~VsVID~~t~kvv 406 (426)
T 3c75_H 392 -TQTLHIYDAATGEEL 406 (426)
T ss_dssp -TTEEEEEETTTCCEE
T ss_pred -CCeEEEEECCCCCEE
Confidence 368999998876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=84.39 E-value=39 Score=34.58 Aligned_cols=114 Identities=9% Similarity=-0.137 Sum_probs=58.5
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCC----CCCCceEEEEeCCCCe
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDG----VSSLNTVECYEPDKDQ 582 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~----~~~~~~~~~yd~~~~~ 582 (748)
..+|+.-+.... ....+.+||+.+++- +..++.+... ..+.. +..+|+..-... ....+.+..||+.+.+
T Consensus 33 ~~~yv~~~~~~~-~~~~v~v~D~~t~~~--~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~ 108 (373)
T 2mad_H 33 RRSYINLPAHHS-AIIQQWVLDAGSGSI--LGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL 108 (373)
T ss_pred CEEEEeCCcccC-CccEEEEEECCCCeE--EEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc
Confidence 356776431111 111789999988763 3445544433 33332 457888753211 1124678899998754
Q ss_pred EEEccCCC-CCCc-----ceEEEE--ECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 583 WRIVKSMQ-KHRS-----AGGVIA--FDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 583 W~~~~~~~-~~r~-----~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
-...-+++ .+|. -...+. -+..+|+..-.. .+.+..+| .+++-.
T Consensus 109 ~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~----~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 109 PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA----GPAVGLVV-QGGSSD 160 (373)
T ss_pred EEEEEECCCccccccCCCccceEECCCCCEEEEEecCC----CCeEEEEE-CCCCEE
Confidence 32211222 1111 112222 255777764211 25689999 887644
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=84.22 E-value=56 Score=36.23 Aligned_cols=212 Identities=14% Similarity=0.150 Sum_probs=123.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA- 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~- 553 (748)
.++...|..+..-..+-+++..+.-.++++. ++.||+.-.. ...++++++.....+.+..... ..-.++++
T Consensus 15 ~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~-----~~~I~r~~~~g~~~~~v~~~g~-~~P~GlAvD 88 (628)
T 4a0p_A 15 ADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS-----LKTISRAFMNGSALEHVVEFGL-DYPEGMAVD 88 (628)
T ss_dssp TEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEECSSC-SCCCEEEEE
T ss_pred CcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECC-----CCeEEEEECCCCCcEEEEeCCC-CCcceEEEE
Confidence 5677888876554444344333445566655 6899997542 3578899987665554432211 11234454
Q ss_pred -ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc--cCCCCCCcceEEEEE--CCEEEEEc-cCCCCcccCeEEEEECCC
Q psy10286 554 -LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV--KSMQKHRSAGGVIAF--DSYVYALG-GHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 554 -~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~~yd~~~ 627 (748)
.+++||+.-. ....++++++....=+.+ ..+..| .++++. +|.||+.- |. ...+++.++..
T Consensus 89 ~~~~~LY~tD~-----~~~~I~v~~~dG~~~~~l~~~~l~~P---~~iavdp~~G~lY~tD~g~-----~~~I~r~~~dG 155 (628)
T 4a0p_A 89 WLGKNLYWADT-----GTNRIEVSKLDGQHRQVLVWKDLDSP---RALALDPAEGFMYWTEWGG-----KPKIDRAAMDG 155 (628)
T ss_dssp TTTTEEEEEET-----TTTEEEEEETTSTTCEEEECSSCCCE---EEEEEETTTTEEEEEECSS-----SCEEEEEETTS
T ss_pred eCCCEEEEEEC-----CCCEEEEEecCCCcEEEEEeCCCCCc---ccEEEccCCCeEEEeCCCC-----CCEEEEEeCCC
Confidence 4789999744 236789998865532222 233333 244444 68999875 32 35799999876
Q ss_pred CcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-CCCCCCcceEEEEECCEEEEEeC
Q psy10286 628 DEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-SMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
..-+.+.. .-..-.+.+.- +++||+.-.. .+.|+.+|+....=+.+. .++ .-.++++.+++||+.--
T Consensus 156 ~~~~~l~~--~~~~P~GlalD~~~~~LY~aD~~-----~~~I~~~d~dG~~~~v~~~~l~---~P~glav~~~~ly~tD~ 225 (628)
T 4a0p_A 156 SERTTLVP--NVGRANGLTIDYAKRRLYWTDLD-----TNLIESSNMLGLNREVIADDLP---HPFGLTQYQDYIYWTDW 225 (628)
T ss_dssp CSCEEEEC--SCSSEEEEEEETTTTEEEEEETT-----TTEEEEEETTSCSCEEEEECCS---CEEEEEEETTEEEEEET
T ss_pred CceEEEEC--CCCCcceEEEccccCEEEEEECC-----CCEEEEEcCCCCceEEeeccCC---CceEEEEECCEEEEecC
Confidence 65544432 11111233333 5899998643 468999998653323332 222 23567777899998842
Q ss_pred CCCCCCCCeEEEEeCCCC
Q psy10286 705 YDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~ 722 (748)
....|+++|..++
T Consensus 226 -----~~~~I~~~dk~tg 238 (628)
T 4a0p_A 226 -----SRRSIERANKTSG 238 (628)
T ss_dssp -----TTTEEEEEETTTC
T ss_pred -----CCCEEEEEECCCC
Confidence 2245777776543
|
| >3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.22 E-value=0.81 Score=37.79 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=40.2
Q ss_pred hhhHHHHHHHhhcceeEEEecc-cHHHHHHHhhhcCcHHHHHHHHHHHh
Q psy10286 219 SCRAMEALINFAYSGRVTIHSQ-NVQSLMVVASFLQMQKVADACADFLK 266 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~~~-~~~~l~~~a~~~~l~~l~~~c~~~l~ 266 (748)
+...|+.+++|+++|.+.+..+ ....++..|++|+|+.|++.|++-|.
T Consensus 57 dp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~ 105 (107)
T 3drz_A 57 DPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIR 105 (107)
T ss_dssp CHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 5678888999999998876443 34789999999999999999988765
|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
Probab=83.60 E-value=5.5 Score=37.81 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=58.7
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEe--CCC--CeEE----Ec----cCCCC---C-CcceEEEE-ECCEEEEEccCCCCcc
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYE--PDK--DQWR----IV----KSMQK---H-RSAGGVIA-FDSYVYALGGHDGLSI 616 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd--~~~--~~W~----~~----~~~~~---~-r~~~~~~~-~~~~iyv~GG~~~~~~ 616 (748)
.++++|+|-| +.+|+|+ +.+ +.-. .+ +.+|. + ...++... .++++|+|-|.
T Consensus 71 ~~g~~~fFKg-------~~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG~----- 138 (227)
T 3lp9_A 71 ENNEAFIFYE-------NFCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKGD----- 138 (227)
T ss_dssp STTEEEEEET-------TEEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEETT-----
T ss_pred CCCEEEEEeC-------CEEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEECC-----
Confidence 5899999988 5788998 321 1111 11 12331 1 22222222 26899999884
Q ss_pred cCeEEEEECCCCcEEE-----cc-CCCCC------CcceeEEE--ECCEEEEEeccCCCccccEEEEEeCCCC
Q psy10286 617 FDSVERYDPKTDEWTS-----VK-PMLTK------RCRLGVAA--LNNKIYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 617 ~~~~~~yd~~~~~W~~-----~~-~~p~~------r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
..|+||..+++-.. +. .+|.. ..--++.. .++++|++-| +..|.||..++
T Consensus 139 --~yw~~d~~~~~~~~gyPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 139 --QYARIDYGSNSMVNKEIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD-------DHYARVKVTPX 202 (227)
T ss_dssp --EEEEEETTTTEESSSSCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------TEEEEEECCSS
T ss_pred --EEEEEeCCCccccCCCCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC-------CEEEEEECCcc
Confidence 79999987653211 11 12211 12223333 2589999987 68899998776
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.48 E-value=0.39 Score=49.95 Aligned_cols=142 Identities=14% Similarity=0.177 Sum_probs=58.4
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC-
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD- 628 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 628 (748)
++.++.+|+.+. + ..++.+|..+++ |+... . ....+.+..++.+|+.|+.+ ..++.+|.++.
T Consensus 6 ~v~~~~v~~gs~-d-----g~v~a~d~~tG~~~W~~~~--~--~~~s~p~~~~g~~~v~~s~d-----g~l~a~d~~tG~ 70 (369)
T 2hz6_A 6 TLPETLLFVSTL-D-----GSLHAVSKRTGSIKWTLKE--D--PVLQVPTHVEEPAFLPDPND-----GSLYTLGSKNNE 70 (369)
T ss_dssp --CTTEEEEEET-T-----SEEEEEETTTCCEEEEEEC--C--CSCCCC-----CCEEECTTT-----CCEEEC-----C
T ss_pred eeeCCEEEEEcC-C-----CEEEEEECCCCCEEEEecC--C--CceecceEcCCCEEEEeCCC-----CEEEEEECCCCc
Confidence 344677776543 2 368999987764 87654 1 11123344567788887553 35899998654
Q ss_pred -cEEEccCCCCCCcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeC
Q psy10286 629 -EWTSVKPMLTKRCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 629 -~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
.|..-...+... ..+.+. .++.+| +|+. ...++.+|+++.+ |+.-..-. ...+..++.||+ |+
T Consensus 71 ~~w~~~~~~~~~~-~~sp~~~~~~~v~-~g~~-----dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p~~~~v~~-~~ 137 (369)
T 2hz6_A 71 GLTKLPFTIPELV-QASPCRSSDGILY-MGKK-----QDIWYVIDLLTGEKQQTLSSAFA-----DSLSPSTSLLYL-GR 137 (369)
T ss_dssp CSEECSCCHHHHH-TTCSCC-----CC-CCEE-----EEEEEEECCC---------------------------EEE-EE
T ss_pred eeeeeeccCcccc-ccCceEecCCEEE-EEeC-----CCEEEEEECCCCcEEEEecCCCc-----ccccccCCEEEE-Ee
Confidence 565422111100 111111 345554 3432 2468899988654 65432110 111123445554 43
Q ss_pred CCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 705 YDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
.+ ..+..+|+.+++ |+.
T Consensus 138 ~d-----g~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 138 TE-----YTITMYDTKTRELRWNA 156 (369)
T ss_dssp EE-----EEEECCCSSSSSCCCEE
T ss_pred cC-----CEEEEEECCCCCEEEeE
Confidence 22 257888887764 763
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=83.40 E-value=17 Score=34.09 Aligned_cols=136 Identities=17% Similarity=0.241 Sum_probs=75.1
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeE--EEc----cCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVW--NKV----SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
.+|.+|+|=| +.+|+++.....+ ..+ +.+|... -++...++++|+|-| +.+|+|+..+
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~~I--DAA~~~~~~~yfFkG-------~~yw~~~~~~ 90 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTV--DAAFSWEDKLYLIQD-------TKVYVFLTKG 90 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSC--SEEEEETTEEEEEET-------TEEEEEECSS
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCCCc--cEEEEECCcEEEecC-------CEEEEEeCCC
Confidence 3788999877 4577776543221 122 2344322 234445999999988 5789998653
Q ss_pred C-eE-----EEcc---CCCCC--Cc-ceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCC---cEEEccCCCCCCcce
Q psy10286 581 D-QW-----RIVK---SMQKH--RS-AGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTD---EWTSVKPMLTKRCRL 643 (748)
Q Consensus 581 ~-~W-----~~~~---~~~~~--r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~ 643 (748)
+ += +.+. .+|.. .. --++... ++++|+|-|. ..|+||..+. .|...+..| ....
T Consensus 91 ~~~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG~-------~ywr~d~~~~P~~i~~~~~g~p-~~vd- 161 (219)
T 1hxn_A 91 GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR-------RLWWLDLKSGAQATWTELPWPH-EKVD- 161 (219)
T ss_dssp SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT-------EEEEEEGGGGGGCCCEEECCSC-SCCS-
T ss_pred CceecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeCC-------EEEEEeCCCCceEhhhcCCCCC-CCcC-
Confidence 2 11 1121 12322 11 2233332 6899999884 7899996542 333322222 2222
Q ss_pred eEEE------------ECCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 644 GVAA------------LNNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 644 ~~~~------------~~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
++.. .++.+|++-| +..|.||..+
T Consensus 162 Aa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~~ 197 (219)
T 1hxn_A 162 GALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHVD 197 (219)
T ss_dssp EEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSHH
T ss_pred EEEEccccccccceeccCCeEEEEEC-------CEEEEEeCCc
Confidence 2333 3467999887 5677887643
|
| >1hxn_A Hemopexin, HPX; heme, binding protein; 1.80A {Oryctolagus cuniculus} SCOP: b.66.1.1 | Back alignment and structure |
|---|
Probab=83.23 E-value=30 Score=32.40 Aligned_cols=136 Identities=15% Similarity=0.214 Sum_probs=75.6
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeE--EEcc----CCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQW--RIVK----SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
.+|++|+|-| +..|+++.....+ ..+. .+|. .--++...++++|+|-|. .+|+|+..+
T Consensus 27 ~~g~~yfFkg-------~~~Wr~~~~~~~~~p~~Is~~wpgLP~--~IDAA~~~~~~~yfFkG~-------~yw~~~~~~ 90 (219)
T 1hxn_A 27 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPS--TVDAAFSWEDKLYLIQDT-------KVYVFLTKG 90 (219)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCS--SCSEEEEETTEEEEEETT-------EEEEEECSS
T ss_pred CCCcEEEEeC-------CEEEEEcCCCCCCCceEhhhhccCCCC--CccEEEEECCcEEEecCC-------EEEEEeCCC
Confidence 4899999987 4566666543221 1221 2332 222344458999999884 799998753
Q ss_pred CcEEEcc----------CCCCC--CcceeEEE-E--CCEEEEEeccCCCccccEEEEEeCCC---CcEEEccCCCCCCcc
Q psy10286 628 DEWTSVK----------PMLTK--RCRLGVAA-L--NNKIYVCGGYDGAIFLQSVEMYDPIT---DEWKMIASMNVMRSR 689 (748)
Q Consensus 628 ~~W~~~~----------~~p~~--r~~~~~~~-~--~~~i~v~GG~~~~~~~~~v~~yd~~~---~~W~~~~~~p~~r~~ 689 (748)
+. +... .+|.. ....-+|. . ++++|++-| +..|.||..+ ..|...+.+|.. -.
T Consensus 91 ~~-~~~~gyPk~i~~~~G~p~~~~~~~IDAA~~~~~~gk~yfFkG-------~~ywr~d~~~~P~~i~~~~~g~p~~-vd 161 (219)
T 1hxn_A 91 GY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPWPHEK-VD 161 (219)
T ss_dssp SC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECCSCSC-CS
T ss_pred Cc-eecCCCCeehhhccCCCCcccccccceeEEecCCCEEEEEeC-------CEEEEEeCCCCceEhhhcCCCCCCC-cC
Confidence 21 1221 12322 11223333 2 589999988 6789999654 234433333222 22
Q ss_pred eEEEE-----------ECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 690 VALVA-----------NMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 690 ~~~~~-----------~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
++... .++.+|+|-| +.-+.||..+
T Consensus 162 Aa~~~~~~~~~~~~~~~~~~~YFFkg-------~~y~r~~~~~ 197 (219)
T 1hxn_A 162 GALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRHVD 197 (219)
T ss_dssp EEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESSHH
T ss_pred EEEEccccccccceeccCCeEEEEEC-------CEEEEEeCCc
Confidence 22221 3568999977 3567777643
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.31 E-value=56 Score=36.68 Aligned_cols=278 Identities=8% Similarity=0.024 Sum_probs=128.2
Q ss_pred cceEeecCCCCce---eecccccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccc---e----------
Q psy10286 438 STVEVFDPLVGRW---QMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRS---R---------- 501 (748)
Q Consensus 438 ~~~~~y~~~~~~W---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~---~---------- 501 (748)
.+++.+|..+++. ..+.. .......++++.....+ .-..++.+|..+++-.++..-..... +
T Consensus 90 ~~i~~~d~~~g~~~~~~~l~~-~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNELPR-PIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEEEEEETTTTEECCSSCCCS-SBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred eEEEEEECCCCccccceecCc-ccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 4688888888776 44432 22333444443321111 12578899988877666542221110 0
Q ss_pred ----eEEEEE-CCEEEEEccCCCC-----------------------------CCCCeEEEEECCCCe---EEEccCC--
Q psy10286 502 ----VGVAVM-KNRLYAFGGYNGS-----------------------------ERLSTVEEFDPVRRV---WNKVSPM-- 542 (748)
Q Consensus 502 ----~~~~~~-~~~iyv~GG~~~~-----------------------------~~~~~v~~yd~~t~~---W~~~~~~-- 542 (748)
.+.+.. +|+..+++..+.. .....++.+|..+++ |..+...
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 122222 5555555443211 122368888888765 2233211
Q ss_pred --CCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEe----CCCCeEEEccC----CCCCCcc-----eEEEEECC-EE
Q psy10286 543 --CFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYE----PDKDQWRIVKS----MQKHRSA-----GGVIAFDS-YV 605 (748)
Q Consensus 543 --~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd----~~~~~W~~~~~----~~~~r~~-----~~~~~~~~-~i 605 (748)
.........+.. ++++++.... .......++.+| +.++++..+.. -...... .....-+| .+
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~-~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLK-RVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEE-SSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCE
T ss_pred CCCCcceEEEeEEeCCCeEEEEEec-cccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeE
Confidence 011111222222 6776665321 112235788899 77766554431 1111111 11222244 45
Q ss_pred EEE-ccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccC-CCccccEEEEEeCCCC--cEEEcc
Q psy10286 606 YAL-GGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYD-GAIFLQSVEMYDPITD--EWKMIA 681 (748)
Q Consensus 606 yv~-GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~--~W~~~~ 681 (748)
++. ...++ ...++.+|..+.+...+.......... ...-++.||+.+... .......+|..+..+. +.+.+.
T Consensus 327 ~~~~~~~~g---~~~l~~~~~~~~~~~~lt~~~~~v~~~-~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 327 YKIFSDKDG---YKHIHYIKDTVENAIQITSGKWEAINI-FRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp EEEEECTTS---CEEEEEESSCSTTCEECSCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred EEEEEccCC---ceEEEEEECCCCceEecccCceEEEEE-EEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc
Confidence 543 33333 357999999888766664322111111 122344566655330 1112346777777554 345553
Q ss_pred C-CCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 682 S-MNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 682 ~-~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
. ++........+.. +++.+++.+... ..+.+++||..+++.
T Consensus 403 ~~~~~~~~~~~~~~~s~dg~~l~~~~s~~--~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 403 CHLRKERCQYYTASFSDYAKYYALVCYGP--GIPISTLHDGRTDQE 446 (719)
T ss_dssp TTTTTTTBCBEEEEECGGGSSEEEEECCB--SSCEEEEECSSSCCE
T ss_pred CccCCCCCceEEEEECCCCCEEEEEcCCC--CCCeEEEEECCCCCE
Confidence 2 2212222222222 344334322111 224688888877653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=81.93 E-value=25 Score=39.66 Aligned_cols=187 Identities=10% Similarity=0.025 Sum_probs=98.9
Q ss_pred ccccccCCCccceEEEEeCCC----CceEEcc--CCCcccceeEEEE--ECCEEEEEccCCCCCCCCeEEEEECCCCeEE
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLV----GRWQMAE--AMSMLRSRVGVAV--MKNRLYAFGGYNGSERLSTVEEFDPVRRVWN 537 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~----~~W~~~~--~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 537 (748)
.+.+|........++++++.. ..-..+. .+..| .++++ .++.||+.-. ....++++++....-.
T Consensus 417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~LY~tD~-----~~~~I~v~d~dg~~~~ 488 (699)
T 1n7d_A 417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNIYWTDS-----VLGTVSVADTKGVKRK 488 (699)
T ss_dssp TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBCEECCT-----TTSCEEEEBSSSCCEE
T ss_pred cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcEEEEec-----cCCeEEEEecCCCceE
Confidence 444555544456778888764 1111111 11112 22333 4678988632 2356899998876544
Q ss_pred EccC--CCCCcceeEEEE--ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccC
Q psy10286 538 KVSP--MCFKRSAVGAAA--LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGH 611 (748)
Q Consensus 538 ~~~~--~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~ 611 (748)
.+.. +..|+ ++++ .++.||+..- .....++++++....-+.+..-.. ..-.++++- +++||+.-..
T Consensus 489 ~l~~~~~~~P~---giavDp~~g~ly~td~----~~~~~I~~~~~dG~~~~~l~~~~l-~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 489 TLFREQGSKPR---AIVVDPVHGFMYWTDW----GTPAKIKKGGLNGVDIYSLVTENI-QWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp EECCCSSCCCC---CEECCSSSSCCEECCC----SSSCCEEBCCSSSCCCCEESCSSC-SSCCCEEECTTTCCEEEEETT
T ss_pred EEEeCCCCCcc---eEEEccCCCcEEEccc----CCCCeEEEEeCCCCCeeEEEeCCC-CCccEEEEeccCCEEEEEecC
Confidence 4322 22332 2333 2678887531 112467777765443322221111 111234442 6789987654
Q ss_pred CCCcccCeEEEEECCCCcEEEccCCC-CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 612 DGLSIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 612 ~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
...|+++|+....-..+...+ ......++++.++.||+.-.. .+.|.++|+.+.+-.
T Consensus 561 -----~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~-----~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 561 -----LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII-----NEAIFSANRLTGSDV 618 (699)
T ss_dssp -----TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECST-----TTCEEEEETTTEEEE
T ss_pred -----CCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCC-----CCeEEEEEccCCCce
Confidence 457999998754444443221 122335667788899998732 357889998765433
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=81.26 E-value=30 Score=35.15 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=59.0
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCC----CCCCceEEEEeCCCCe
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDG----VSSLNTVECYEPDKDQ 582 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~----~~~~~~~~~yd~~~~~ 582 (748)
.++||.-........+.+++||+.+.+-.. .++..... .++.. +..+|+..-..+ ...-+.+..||+.+.+
T Consensus 16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~--~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~ 92 (361)
T 2oiz_A 16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLG--MVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT 92 (361)
T ss_dssp GEEEEEECCGGGGGGCEEEEEETTTCCEEE--EEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred CEEEEECCCCCccccCeEEEEECCCCeEEE--EecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence 356665432112223578999988876432 23333333 33333 457888752110 0123568999998765
Q ss_pred EEEccCCCCCC-----cceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 583 WRIVKSMQKHR-----SAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 583 W~~~~~~~~~r-----~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
-...-+++..+ .-+.++.. +..+|+.... ..+.+.++|+.+++-.
T Consensus 93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~----~~~~v~v~d~~~~~~~ 144 (361)
T 2oiz_A 93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS----PATSIGIVDVAKGDYV 144 (361)
T ss_dssp EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES----SSEEEEEEETTTTEEE
T ss_pred EEEEEEcCccccccCCCcceEEECCCCCEEEEECCC----CCCeEEEEECCCCcEE
Confidence 32221222111 12233332 4577776421 0256889999887543
|
| >3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* | Back alignment and structure |
|---|
Probab=80.89 E-value=52 Score=33.51 Aligned_cols=128 Identities=13% Similarity=0.134 Sum_probs=79.8
Q ss_pred CCCCceE--EccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEE-EE------CCCCeEEEccC-CCCCcceeEEEE
Q psy10286 484 PLVGRWQ--MAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEE-FD------PVRRVWNKVSP-MCFKRSAVGAAA 553 (748)
Q Consensus 484 ~~~~~W~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd------~~t~~W~~~~~-~~~~r~~~~~~~ 553 (748)
...+.|+ .++..|..-.-|+.+.+++.-|++|=.++......+-. |- |..-.=+.++. ....-+..+.-.
T Consensus 267 F~~spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvky 346 (670)
T 3ju4_A 267 FHKSPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSEYEPDASEPCIKY 346 (670)
T ss_dssp STTSCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGGGCTTEEEEEEEE
T ss_pred eccCCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhh
Confidence 3455674 45666766677999999988889986665544444322 21 11122233333 222334455556
Q ss_pred ECCEEEEEe-CCCCCCCCceEEEEeCCCCeEEEccC-CCCCCcceEEEEECCEEEEEccC
Q psy10286 554 LNDKLYVCG-GYDGVSSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIAFDSYVYALGGH 611 (748)
Q Consensus 554 ~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~GG~ 611 (748)
++|.+|+.- |..+...-+.+.+-+.....|+.+.- -........-+..++.||+||..
T Consensus 347 YdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 406 (670)
T 3ju4_A 347 YDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSE 406 (670)
T ss_dssp ETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEEC
T ss_pred hCCEEEEEecCcCCCCCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEecc
Confidence 799999884 44444555678888888889988742 22233444567789999999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=80.88 E-value=51 Score=33.39 Aligned_cols=152 Identities=9% Similarity=0.027 Sum_probs=81.1
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+|+..++++.+ .-..+..||+.+.+......- ...-.+++.. ++++++.|+. +.+..++..+......
T Consensus 144 Dg~~la~as~~---~d~~i~iwd~~~~~~~~~~~~--~~~V~~v~fspdg~~l~s~s~------~~~~~~~~~~~~~~~~ 212 (365)
T 4h5i_A 144 EGTVAAIASSK---VPAIMRIIDPSDLTEKFEIET--RGEVKDLHFSTDGKVVAYITG------SSLEVISTVTGSCIAR 212 (365)
T ss_dssp TSSCEEEEESC---SSCEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSSEEEEECS------SCEEEEETTTCCEEEE
T ss_pred CCCEEEEEECC---CCCEEEEeECCCCcEEEEeCC--CCceEEEEEccCCceEEeccc------eeEEEEEeccCcceee
Confidence 66655543311 124688899988775443221 1111223322 5666666653 3577788777765433
Q ss_pred cCCCCCCcceeE--EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc--CCCCCCcceEEEEE--CCEEEEEeCCCC
Q psy10286 634 KPMLTKRCRLGV--AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA--SMNVMRSRVALVAN--MGKLWAIGGYDG 707 (748)
Q Consensus 634 ~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~--~~~l~v~GG~~~ 707 (748)
............ ..-++..++.++.++.. ...++.+|.....+.... .+........++.+ ++++++.|+.++
T Consensus 213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~ 291 (365)
T 4h5i_A 213 KTDFDKNWSLSKINFIADDTVLIAASLKKGK-GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN 291 (365)
T ss_dssp ECCCCTTEEEEEEEEEETTEEEEEEEESSSC-CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS
T ss_pred eecCCCCCCEEEEEEcCCCCEEEEEecCCcc-eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC
Confidence 222222222222 23378888888765432 225667777666554432 12222222233333 788888888653
Q ss_pred CCCCCeEEEEeCCCCc
Q psy10286 708 VSNLPTVEVYDPSTDS 723 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~ 723 (748)
.|.+||.++.+
T Consensus 292 -----~V~iwd~~~~~ 302 (365)
T 4h5i_A 292 -----SIALVKLKDLS 302 (365)
T ss_dssp -----CEEEEETTTTE
T ss_pred -----EEEEEECCCCc
Confidence 58999987764
|
| >3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus sativus} PDB: 3s0l_A 3v6n_A 4hsd_A 3s18_A | Back alignment and structure |
|---|
Probab=80.65 E-value=21 Score=33.69 Aligned_cols=140 Identities=10% Similarity=0.051 Sum_probs=76.2
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCC----CeEEE----c----cCCCC-----CCcceEEEEECCEEEEEccCCCCccc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDK----DQWRI----V----KSMQK-----HRSAGGVIAFDSYVYALGGHDGLSIF 617 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~----~----~~~~~-----~r~~~~~~~~~~~iyv~GG~~~~~~~ 617 (748)
+|++|+|-| +..|+++... +.... + +.+|. .....+.-..++++|+|-|.
T Consensus 15 ~ge~yfFkg-------~~~wr~~~~~~~~~~~~~~~P~~I~~~W~~Lp~~~f~p~~iDaaf~~~~g~~~fFKg~------ 81 (227)
T 3lp9_A 15 NNEAYFFIN-------DKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGIDCSFDTENNEAFIFYEN------ 81 (227)
T ss_dssp TTEEEEEET-------TEEEEEECCTTSSCCEEEEEEEEHHHHSGGGTTSHHHHHCCSEEEECSTTEEEEEETT------
T ss_pred CCeEEEEEC-------CEEEEEeCCCCCccccccCCceEHhhcCCcCCcccCCCCCceEEEECCCCEEEEEeCC------
Confidence 689999977 4677776521 22211 1 22321 12222222358999999884
Q ss_pred CeEEEEE--CCCCcEE------Ecc----CCCC---CCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-
Q psy10286 618 DSVERYD--PKTDEWT------SVK----PMLT---KRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM- 679 (748)
Q Consensus 618 ~~~~~yd--~~~~~W~------~~~----~~p~---~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~- 679 (748)
.+|+|+ +.+.... .+. .+|. +..--++... ++++|++-| +..|+||..+++-..
T Consensus 82 -~~Wr~~~~~~~~~~~~~~gP~~I~~~w~gLp~~~~p~~IDAA~~~~~~~k~yfFkG-------~~yw~~d~~~~~~~~g 153 (227)
T 3lp9_A 82 -FCALIDYAPHSKKDKIILGPKKIADVFPFFEGTVFESGIDAAYRSTRGKEVYLFKG-------DQYARIDYGSNSMVNK 153 (227)
T ss_dssp -EEEEEECCTTTCCCEEEEEEEEHHHHSGGGTTSTTTTCCSEEEECSSTTEEEEEET-------TEEEEEETTTTEESSS
T ss_pred -EEEEEeCCCCccccccccCceEHhhhcCCCCCccCCCcccEEEEECCCCEEEEEEC-------CEEEEEeCCCccccCC
Confidence 789998 3221111 111 2331 1111223232 689999988 689999987653211
Q ss_pred ----cc-CCCCC------CcceEEEE--ECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 680 ----IA-SMNVM------RSRVALVA--NMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 680 ----~~-~~p~~------r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+. .+|.. ..--++.. .++++|+|-| +.-|.||..+.
T Consensus 154 yPk~i~~g~p~~~~~g~p~~iDAA~~~~~~g~~YfFkg-------~~Ywr~d~~~~ 202 (227)
T 3lp9_A 154 EIKSISSGYPCFRNTIFESGADAAFASHKTNEVYFFKD-------DHYARVKVTPX 202 (227)
T ss_dssp SCEEHHHHCGGGTTSGGGGCCSEEEECSSTTEEEEEET-------TEEEEEECCSS
T ss_pred CCeEHHHCCCCccccccCCCccEEEEcCCCceEEEEEC-------CEEEEEECCcc
Confidence 11 12211 11223333 3689999977 46799998776
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=80.10 E-value=18 Score=40.76 Aligned_cols=166 Identities=9% Similarity=-0.110 Sum_probs=81.2
Q ss_pred CCEEEEEccCCCC----CCCCeEEEEECCCCeEEEccCCCCC--cceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 508 KNRLYAFGGYNGS----ERLSTVEEFDPVRRVWNKVSPMCFK--RSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 508 ~~~iyv~GG~~~~----~~~~~v~~yd~~t~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
+|+..+++..+.. .....++.+|..+.+-..+...... +....+..-+|+..+++.. ..++.+|..++
T Consensus 71 Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------~~i~~~~~~~g 144 (723)
T 1xfd_A 71 DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------NNIYYCAHVGK 144 (723)
T ss_dssp TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET------TEEEEESSSSS
T ss_pred CCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC------CeEEEEECCCC
Confidence 5665555543322 2246899999998876555432211 1111122225554445442 36888888776
Q ss_pred eEEEccCCCCCCc----------------ceEEEEE--CCEEEEEccCCCC-----------------------------
Q psy10286 582 QWRIVKSMQKHRS----------------AGGVIAF--DSYVYALGGHDGL----------------------------- 614 (748)
Q Consensus 582 ~W~~~~~~~~~r~----------------~~~~~~~--~~~iyv~GG~~~~----------------------------- 614 (748)
....+........ ....... +|+.++++..++.
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 6554432211100 0012222 4544444432210
Q ss_pred cccCeEEEEECCCCcE-EEccCCCCC---CcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 615 SIFDSVERYDPKTDEW-TSVKPMLTK---RCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 615 ~~~~~~~~yd~~~~~W-~~~~~~p~~---r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
.....++.+|..+.+- ..+...... ......+.+ +++++++....+ .....++.+|..+.+...+
T Consensus 225 ~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRA-QNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETT-SCEEEEEEEETTTCCEEEE
T ss_pred CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCC-CCeEEEEEEeCCCCcceEE
Confidence 0123788899887762 444321110 111222223 677665554322 2245789999988876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 748 | ||||
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 7e-38 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 9e-31 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 2e-25 | |
| d1zgka1 | 288 | b.68.11.1 (A:322-609) Kelch-like ECH-associated pr | 6e-18 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 5e-27 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 3e-22 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-22 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 2e-20 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-20 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 8e-18 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-13 | |
| d1k3ia3 | 387 | b.69.1.1 (A:151-537) Galactose oxidase, central do | 1e-09 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 3e-21 | |
| d1r29a_ | 122 | d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB | 1e-07 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 7e-20 | |
| d1buoa_ | 121 | d.42.1.1 (A:) Promyelocytic leukaemia zinc finger | 3e-09 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 140 bits (353), Expect = 7e-38
Identities = 101/273 (36%), Positives = 149/273 (54%), Gaps = 4/273 (1%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEE 528
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++
Sbjct: 15 RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 74
Query: 529 FDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
++P+ W+ +PM R+ +G ++ +Y GG G N+VE YEP++D+W +V
Sbjct: 75 YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP 134
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
M R GV + +YA+GG DG + +S E Y P+ +EW + M T R GV L
Sbjct: 135 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 194
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
+N IY GGYDG L SVE YD T+ W +A M RS + + + G+++ +GGYDG
Sbjct: 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 254
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
+ L +VE YDP TD+W+ V M + GVGV V
Sbjct: 255 TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (300), Expect = 9e-31
Identities = 102/282 (36%), Positives = 152/282 (53%), Gaps = 14/282 (4%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA------------VISTKSCLTK 471
I+ GG SLS +E ++P G W + + + + ++
Sbjct: 7 IYTAGGYF--RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 64
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
S ++ ++P+ +W MS+ R+R+GV V+ +YA GG +G ++VE ++P
Sbjct: 65 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 124
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
R W+ V+PM +R VG A LN LY GG+DG + LN+ ECY P++++WR++ +M
Sbjct: 125 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 184
Query: 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK 651
RS GV + +YA GG+DG +SVERYD +T+ WT V PM +R LG+ +
Sbjct: 185 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGR 244
Query: 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV 693
IYV GGYDG FL SVE YDP TD W + M RS V +
Sbjct: 245 IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 286
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 2e-25
Identities = 89/238 (37%), Positives = 129/238 (54%), Gaps = 5/238 (2%)
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD--- 565
+Y GGY + LS +E ++P W +++ + RS + + LY GG +
Sbjct: 5 RLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 566 -GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYD 624
G + + ++CY P +QW M R+ GV D ++YA+GG G +SVERY+
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 123
Query: 625 PKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN 684
P+ DEW V PMLT+R +GVA LN +Y GG+DG L S E Y P +EW+MI +MN
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN 183
Query: 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
+RS + ++A GGYDG L +VE YD T++W FVAPM +G+ V
Sbjct: 184 TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 241
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 6e-18
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 5/182 (2%)
Query: 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG--- 610
+ +Y GGY SL+ +E Y P W + +Q RS +YA+GG
Sbjct: 3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 611 -HDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEM 669
DG + +++ Y+P T++W+ PM R R+GV ++ IY GG G I SVE
Sbjct: 62 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER 121
Query: 670 YDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729
Y+P DEW ++A M R V + L+A+GG+DG + L + E Y P + W +
Sbjct: 122 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA 181
Query: 730 MC 731
M
Sbjct: 182 MN 183
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 111 bits (278), Expect = 5e-27
Identities = 41/350 (11%), Positives = 94/350 (26%), Gaps = 52/350 (14%)
Query: 422 GHIFAVGGLTK-----AGDSLSTVEVFDPLVGRWQMAEE-------ETLSNAVISTKSCL 469
G + + ++ +DP G ++ +
Sbjct: 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV 90
Query: 470 TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN--RLYAFGGYNGSERLSTVE 527
G+ ++D W M + R A M + G ++G E
Sbjct: 91 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 150
Query: 528 EFDPVRRVWNKVSPM----CFKRSAVGAAALNDKLYVCGGYDGV-----SSLNTVECYEP 578
+ P + W + G ++ ++ G G S Y
Sbjct: 151 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 210
Query: 579 DKDQWRIVKSMQKHRSAGGV-----------------IAFDSYVYALGGHDGLSIFDSVE 621
+ Q +R S Y + ++
Sbjct: 211 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG 270
Query: 622 RYDPKTDEWTSVKPMLTKRCR-LGVAALNNKIYVCGG------YDGAIFLQSVEMYDPIT 674
+ + + R V + ++ GG ++ + + + E+Y P
Sbjct: 271 EPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 330
Query: 675 DEWKMIASMNVMRSR--VALVANMGKLWAIGG---YDGVSNLPTVEVYDP 719
D + +++R ++L+ G+++ GG D +N +++ P
Sbjct: 331 DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP 380
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 97.6 bits (241), Expect = 3e-22
Identities = 35/296 (11%), Positives = 77/296 (26%), Gaps = 40/296 (13%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSR--VGVAVMKNRLYAFGGYNGSERLSTVEEF 529
+ ++ +DP G G+++ N G N + +
Sbjct: 47 SPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLY 103
Query: 530 DPVRRVWNKVS--PMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK 587
D W + + + + G + G E Y P W +
Sbjct: 104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP 163
Query: 588 SMQKH----RSAGGVIAFDSYVYALGGHDGLSIF-----DSVERYDPKTDEWTSVKPMLT 638
+ + + G+ D++ + G G Y + + S +
Sbjct: 164 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 223
Query: 639 KR-----CRLGVAAL------------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681
R G A + + Y + ++ +
Sbjct: 224 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 283
Query: 682 SMNV-MRSRVALVANMGKLWAIGG------YDGVSNLPTVEVYDPSTDSWAFVAPM 730
+ ++V G + GG ++ + + T E+Y P D++ P
Sbjct: 284 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 96.0 bits (237), Expect = 8e-22
Identities = 41/311 (13%), Positives = 80/311 (25%), Gaps = 50/311 (16%)
Query: 412 TTPRRCNYVMGHIFAVGG--LTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSC- 468
T + + G G + G+ ++D W + ++ S+ +
Sbjct: 70 TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 129
Query: 469 ---------LTKAGDSLSTVEVFDPLVGRWQMAEAMSM----LRSRVGVAVMKNRLYAFG 515
G EV+ P W + + G+ N + FG
Sbjct: 130 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 189
Query: 516 GYNGSE-----RLSTVEEFDPVRRVWNKVSPMCFKR---------SAVGAAALNDKLYVC 561
GS + + R +AV A+ K+
Sbjct: 190 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 249
Query: 562 GGYDGVSSLNTVECYEP--------DKDQWRIVKSMQK-HRSAGGVIAFDSYVYALGGHD 612
GG + + + V+ D + GG
Sbjct: 250 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309
Query: 613 GLSIFD------SVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGG---YDGA 661
F+ + E Y P+ D + P R ++ L + +++ GG D
Sbjct: 310 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 369
Query: 662 IFLQSVEMYDP 672
+++ P
Sbjct: 370 TNHFDAQIFTP 380
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 91.8 bits (226), Expect = 2e-20
Identities = 29/224 (12%), Positives = 59/224 (26%), Gaps = 24/224 (10%)
Query: 536 WNKVSPMCFKRSAVGAAALNDKLYVCGGYD------GVSSLNTVECYEPDKDQWRIVKSM 589
W + +A + ++ + Y + ++P
Sbjct: 11 WGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT 70
Query: 590 QKHRS---AGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA 646
G + + + GG+D YD +D W M R A
Sbjct: 71 VTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSA 126
Query: 647 AL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM----RSRVALVANMGKLW 700
+ + G + G +F ++ E+Y P + W + + V + L + W
Sbjct: 127 TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186
Query: 701 AIGGYDGV-----SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739
G G + Y + ++ G
Sbjct: 187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 230
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 89.9 bits (221), Expect = 8e-20
Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 24/225 (10%)
Query: 484 PLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY------NGSERLSTVEEFDPVRRVWN 537
P +GRW + ++ + + R+ + Y ++ +DP + +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 538 KVSPMCFKRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS 594
+ K N ++ V GG D Y+ D W MQ R
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 595 AGGVIAFD--SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRL----GVAAL 648
G G + E Y P + WTS+ G+
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181
Query: 649 NNKIYVCGGYDGAIF-----LQSVEMYDPITDEWKMIASMNVMRS 688
+N ++ G G++F Y + + K R
Sbjct: 182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 226
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 83.7 bits (205), Expect = 8e-18
Identities = 31/165 (18%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG------HDGLSIFDSVERYDPKTDEW 630
+P +W + +A + V +DP T
Sbjct: 5 QPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV 64
Query: 631 TSVKPMLTKR---CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+ +TK C N +I V GG D +YD +D W M V R
Sbjct: 65 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 120
Query: 688 SRVALVANMGK--LWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
+ G + G EVY PS+ +W +
Sbjct: 121 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA 165
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 71.4 bits (173), Expect = 1e-13
Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 625 PKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF------LQSVEMYDPITDEWK 678
P W + + + ++ + Y F + +DP T
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 679 MIASMNVMRSRV---ALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEG 735
+ G++ GG D +YD S+DSW M G
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 736 GVG 738
Sbjct: 122 YQS 124
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 672 PITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP------TVEVYDPSTDSWA 725
P W + ++ + A+ G++ Y + +DPST +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 726 FVAPMCAHEGGVGVGVIPICN 746
G+ N
Sbjct: 66 DRTVTVTKHDMFCPGISMDGN 86
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.5 bits (216), Expect = 3e-21
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 34/140 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ +R + L DV I V + F H+ VL A F ++FT + + I+
Sbjct: 16 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPE 75
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
L++F+Y+ R+ + N+ ++M
Sbjct: 76 ----------------------------------GFNILLDFMYTSRLNLREGNIMAVMA 101
Query: 185 VASFLQMQKVADACADFLKK 204
A +LQM+ V D C F+K
Sbjct: 102 TAMYLQMEHVVDTCRKFIKA 121
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 1e-07
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 204 KRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACAD 263
KR LD + + L++F Y+ R+ + N+ ++M A +LQM+ V D C
Sbjct: 60 KRNLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 117
Query: 264 FLKK 267
F+K
Sbjct: 118 FIKA 121
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.9 bits (207), Expect = 7e-20
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 39/139 (28%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
++R G LCDV I VD Q F HR VLA T F+ +F +
Sbjct: 19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS---------------- 62
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ T+ + + ++ + Y+ + ++++ L+
Sbjct: 63 -----------------------QHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLY 99
Query: 185 VASFLQMQKVADACADFLK 203
A L+++ + + C L+
Sbjct: 100 AAEILEIEYLEEQCLKMLE 118
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.1 bits (127), Expect = 3e-09
Identities = 11/70 (15%), Positives = 32/70 (45%)
Query: 197 ACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK 256
+ + FH N+ S + + ++ +AY+ + ++++ L+ A L+++
Sbjct: 49 CTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY 108
Query: 257 VADACADFLK 266
+ + C L+
Sbjct: 109 LEEQCLKMLE 118
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 748 | |||
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 100.0 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.98 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 99.97 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 99.92 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 99.91 | |
| d1r29a_ | 122 | B-cell lymphoma 6 (Bcl6) protein BTB domain {Human | 98.17 | |
| d1buoa_ | 121 | Promyelocytic leukaemia zinc finger (PLZF) protein | 97.82 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 97.75 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.22 | |
| d2c9wc1 | 96 | Elongin C {Human (Homo sapiens) [TaxId: 9606]} | 97.08 | |
| d1nn7a_ | 105 | Potassium channel kv4.2 {Rat (Rattus norvegicus) [ | 97.0 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 96.89 | |
| d1hv2a_ | 99 | Elongin C {Baker's yeast (Saccharomyces cerevisiae | 96.87 | |
| d3kvta_ | 103 | akv3.1 voltage-gated potassium channel {California | 96.83 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.58 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 96.48 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 96.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.24 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.17 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.17 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 96.16 | |
| d1pexa_ | 192 | Collagenase-3 (MMP-13), C-terminal domain {Human ( | 96.09 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 96.07 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 95.97 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 95.95 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.9 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 95.83 | |
| d1t1da_ | 100 | Shaker potassium channel {California sea hare (Apl | 95.77 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 95.74 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.58 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 95.53 | |
| d1su3a2 | 195 | Collagenase (MMP1), C-terminal domain {Human (Homo | 95.53 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 95.53 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.52 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 95.39 | |
| d1itva_ | 195 | Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: | 95.38 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 95.37 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.33 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 94.93 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 94.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 94.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 94.63 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 94.62 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 94.36 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 94.18 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 93.76 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 93.51 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 93.49 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 93.22 | |
| d1gena_ | 200 | Gelatinase A (MMP-2), C-terminal domain {Human (Ho | 93.06 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 92.75 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 92.42 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 92.07 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 92.01 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 91.99 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 91.56 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 90.99 | |
| d1qhua1 | 192 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 89.59 | |
| d1fs1b1 | 55 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 89.49 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 89.41 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 89.34 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 88.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 87.93 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 87.75 | |
| d1fs1b2 | 61 | Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa | 87.1 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.97 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 86.51 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 85.92 | |
| d1nexa1 | 70 | Centromere DNA-binding protein complex Cbf3 subuni | 85.81 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 84.7 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 84.28 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 83.09 | |
| d1hxna_ | 210 | Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: | 82.18 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 81.83 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 80.65 | |
| d1nexa2 | 72 | Centromere DNA-binding protein complex Cbf3 subuni | 80.57 |
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.2e-46 Score=380.85 Aligned_cols=268 Identities=38% Similarity=0.727 Sum_probs=253.8
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC----CCCCCCeEEEEECCCCeEEEccCCCCCccee
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEEFDPVRRVWNKVSPMCFKRSAV 549 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~ 549 (748)
..++++++||+.+++|++++++|.+|.+|++++++++|||+||.. +....+++|+||+.+++|+.++++|.+|++|
T Consensus 16 ~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~ 95 (288)
T d1zgka1 16 QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI 95 (288)
T ss_dssp SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence 456789999999999999999999999999999999999999974 2345789999999999999999999999999
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
+++++++++|++||..+...+++++.||+.++.|...+.++.+|..|+++..++.+|++||.+......+++.||+.+++
T Consensus 96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~ 175 (288)
T d1zgka1 96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNE 175 (288)
T ss_dssp EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred eccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEEEeeccccc
Confidence 99999999999999888778899999999999999999999999999999999999999999877778899999999999
Q ss_pred EEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCC
Q psy10286 630 WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS 709 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 709 (748)
|...+..+..+..++++..+++|+++||.++....++.+.||..+++|..++++|.+|.+|+++.++++|||+||.++..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 255 (288)
T d1zgka1 176 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT 255 (288)
T ss_dssp EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC
T ss_pred cccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCe
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999888
Q ss_pred CCCeEEEEeCCCCceEecCCCCCCCcceEEEE
Q psy10286 710 NLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741 (748)
Q Consensus 710 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~ 741 (748)
..+++++||+++++|+.+++||.+|++|++|+
T Consensus 256 ~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~ 287 (288)
T d1zgka1 256 FLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287 (288)
T ss_dssp BCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred ecceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence 88999999999999999999999999999886
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-36 Score=307.32 Aligned_cols=273 Identities=39% Similarity=0.746 Sum_probs=248.2
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccc---cceEEecccccccCCC---------ccceEEEEeCCCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL---SNAVISTKSCLTKAGD---------SLSTVEVFDPLVG 487 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~---~~~~~~~~~~~~~~g~---------~~~~~~~yd~~~~ 487 (748)
+++.||++||... ..++++++||+.+++|+.+++.+. .++++..++.++..|. ..++++.||+.++
T Consensus 3 ~g~~iyv~GG~~~--~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 80 (288)
T d1zgka1 3 VGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 80 (288)
T ss_dssp CCCCEEEECCBSS--SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred cCCEEEEECCcCC--CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccc
Confidence 4678999999853 578899999999999999876443 3344444555555442 3578999999999
Q ss_pred ceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCC
Q psy10286 488 RWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGV 567 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~ 567 (748)
+|+.++++|.+|.+|+++++++++|++||..+....+.+++||+.+++|...+.++.+|.+|+++..++++|++||.+..
T Consensus 81 ~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~ 160 (288)
T d1zgka1 81 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT 160 (288)
T ss_dssp EEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred cccccccccceecceeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeeeeecceEecCcccc
Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999877
Q ss_pred CCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEE
Q psy10286 568 SSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 568 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 647 (748)
....+++.||+.+++|...+..+.++..++++..+++||++||.++....++.+.||+.+++|+.++++|.+|..|+++.
T Consensus 161 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~ 240 (288)
T d1zgka1 161 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 240 (288)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE
T ss_pred cccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE
Confidence 77889999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE
Q psy10286 648 LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA 694 (748)
Q Consensus 648 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (748)
++++|||+||.++....+++++||+.+++|+.+++||.+|.+|++++
T Consensus 241 ~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~~~ 287 (288)
T d1zgka1 241 HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287 (288)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred ECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEEEE
Confidence 99999999999988889999999999999999999999999998775
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.98 E-value=8.8e-32 Score=288.12 Aligned_cols=296 Identities=13% Similarity=0.199 Sum_probs=220.4
Q ss_pred cCcEEEEEcCccCC-----CCCCcceEeecCCCCceeeccccccc------ceEEecccccccCC-CccceEEEEeCCCC
Q psy10286 420 VMGHIFAVGGLTKA-----GDSLSTVEVFDPLVGRWQMAEEETLS------NAVISTKSCLTKAG-DSLSTVEVFDPLVG 487 (748)
Q Consensus 420 ~~~~i~v~GG~~~~-----~~~~~~~~~y~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~g-~~~~~~~~yd~~~~ 487 (748)
.+++||++||.... ......++.|||.+++|...+..... ..++..++.++..| ...+.+++||+.++
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~ 108 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSD 108 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGT
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccC
Confidence 58999999997532 23344688999999999877543221 22344455555544 45578999999999
Q ss_pred ceEEccCCCcccceeEEEEE-CCEEEEEccCC-CCCCCCeEEEEECCCCeEEEccCCCCCcce--------------eEE
Q psy10286 488 RWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYN-GSERLSTVEEFDPVRRVWNKVSPMCFKRSA--------------VGA 551 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~--------------~~~ 551 (748)
+|..+++|+.+|.+|+++++ ++++|++||.. .....+++++||+.+++|+.++.++.++.. ...
T Consensus 109 ~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (387)
T d1k3ia3 109 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 188 (387)
T ss_dssp EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred cccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEE
Confidence 99999999999999999888 78999999975 445678999999999999998776533221 112
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC-------CcceEEEE--ECCEEEEEccCCCCc---ccCe
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-------RSAGGVIA--FDSYVYALGGHDGLS---IFDS 619 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-------r~~~~~~~--~~~~iyv~GG~~~~~---~~~~ 619 (748)
...+|++|++||. ....+.||+.+..|.....++.+ +.++++.. .++++|++||..... ....
T Consensus 189 ~~~~G~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~ 263 (387)
T d1k3ia3 189 GWKKGSVFQAGPS-----TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 263 (387)
T ss_dssp ECGGGCEEECCSS-----SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCC
T ss_pred EeCCCCEEEecCc-----CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccce
Confidence 2225666666663 46889999999999887654432 33334333 379999999974322 1122
Q ss_pred EE-----EEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCC------CccccEEEEEeCCCCcEEEccCCCCCC
Q psy10286 620 VE-----RYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDG------AIFLQSVEMYDPITDEWKMIASMNVMR 687 (748)
Q Consensus 620 ~~-----~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (748)
.. .+++..+.|+.+.+||.+|..|+++++ +++|||+||... ....+++++||+.+++|+.+++++.+|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R 343 (387)
T d1k3ia3 264 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVR 343 (387)
T ss_dssp EEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCC
T ss_pred eecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcc
Confidence 22 234556689999999999999999988 679999999642 235668999999999999999999999
Q ss_pred cceEEEEE--CCEEEEEeCCCCC---CCCCeEEEEeCC
Q psy10286 688 SRVALVAN--MGKLWAIGGYDGV---SNLPTVEVYDPS 720 (748)
Q Consensus 688 ~~~~~~~~--~~~l~v~GG~~~~---~~~~~v~~yd~~ 720 (748)
.+|+++++ +++|||+||...+ ....++++|||.
T Consensus 344 ~~Hs~a~l~~dG~v~v~GG~~~~~~~~~~~~~e~y~Pp 381 (387)
T d1k3ia3 344 VYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPN 381 (387)
T ss_dssp CTTEEEEECTTSCEEEEECCCCTTCSCCCCEEEEEECG
T ss_pred cceEEEEECCCCEEEEEeCCCcCCCCcccceEEEEcch
Confidence 99988776 8999999996332 245689999983
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=99.97 E-value=4.5e-30 Score=274.70 Aligned_cols=289 Identities=16% Similarity=0.184 Sum_probs=213.3
Q ss_pred CCCCceeeccccccc---ceEEecccccccCC-----------CccceEEEEeCCCCceEEccCCCccccee--EEEEE-
Q psy10286 445 PLVGRWQMAEEETLS---NAVISTKSCLTKAG-----------DSLSTVEVFDPLVGRWQMAEAMSMLRSRV--GVAVM- 507 (748)
Q Consensus 445 ~~~~~W~~~~~~~~~---~~~~~~~~~~~~~g-----------~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~- 507 (748)
|..++|....+.+.. .++...++.++.-| .....+++||+.+++|...+.++.+|..+ +.++.
T Consensus 6 p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~ 85 (387)
T d1k3ia3 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG 85 (387)
T ss_dssp TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT
T ss_pred CCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec
Confidence 678899877654332 23333344443322 22346889999999999988877766543 43333
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCC-CCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYD-GVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~ 585 (748)
+++||++||.+. +++++||+.+++|+..++|+.+|.+|+++++ ||++|++||.. +...+++++.||+.+++|+.
T Consensus 86 ~g~i~v~Gg~~~----~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~ 161 (387)
T d1k3ia3 86 NGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS 161 (387)
T ss_dssp TSCEEEECSSST----TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred CCcEEEeecCCC----cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee
Confidence 889999998653 5789999999999999999999999999988 78999999975 45568999999999999999
Q ss_pred ccCCCCCCcc--------------eEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCC-------CCccee
Q psy10286 586 VKSMQKHRSA--------------GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLT-------KRCRLG 644 (748)
Q Consensus 586 ~~~~~~~r~~--------------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-------~r~~~~ 644 (748)
++.++.++.. ......++++|++||. ...++.||+.+..|.....++. .+..++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (387)
T d1k3ia3 162 LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS-----TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNA 236 (387)
T ss_dssp ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS-----SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEE
T ss_pred cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc-----CCcEEecCcccCcEeeccccccCcccCcccccccE
Confidence 9876543221 1112225677777765 4578999999999998764432 233333
Q ss_pred EEE--ECCEEEEEeccCCCcc---c-----cEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCC------
Q psy10286 645 VAA--LNNKIYVCGGYDGAIF---L-----QSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDG------ 707 (748)
Q Consensus 645 ~~~--~~~~i~v~GG~~~~~~---~-----~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~------ 707 (748)
+.. .++++|++||...... . .+++.++...+.|..++.||.+|..|+++++ +++|||+||...
T Consensus 237 ~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~ 316 (387)
T d1k3ia3 237 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 316 (387)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCC
Confidence 333 2799999999754321 1 1223334566789999999999999988887 789999999753
Q ss_pred CCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 708 VSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
.....++++|||++++|+.+++|+.+|++|++++|
T Consensus 317 ~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l 351 (387)
T d1k3ia3 317 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 351 (387)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEE
T ss_pred CcEeceEEEEECCCCeEEECCCCCCcccceEEEEE
Confidence 23455799999999999999999999999998766
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2e-25 Score=192.80 Aligned_cols=116 Identities=23% Similarity=0.481 Sum_probs=107.5
Q ss_pred ceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhc
Q psy10286 50 LVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAA 129 (748)
Q Consensus 50 ~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 129 (748)
..+++++|++.+++.|+++++++.+|||+|.++|++|+|||+|||++|+||++||.++. .
T Consensus 4 ~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~-----~--------------- 63 (121)
T d1buoa_ 4 IQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS-----Q--------------- 63 (121)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCC-----S---------------
T ss_pred EEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCcc-----c---------------
Confidence 45778899999999999999999999999999999999999999999999999997642 2
Q ss_pred cccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhh
Q psy10286 130 TIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 204 (748)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~ 204 (748)
++.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|++||++
T Consensus 64 -------------------~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 64 -------------------HYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp -------------------EEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------------------eeecCCCCHHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 24448999999999999999999999999999999999999999999999999975
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=3.8e-25 Score=192.42 Aligned_cols=119 Identities=27% Similarity=0.453 Sum_probs=109.9
Q ss_pred ecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccc
Q psy10286 52 FQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATI 131 (748)
Q Consensus 52 ~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 131 (748)
...+.|++.+++.|+++++++.+|||+|.++|++|+|||+||+++|+||++||.+.+.+.....+.+
T Consensus 3 ~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~------------- 69 (122)
T d1r29a_ 3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLD------------- 69 (122)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECC-------------
T ss_pred cccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeee-------------
Confidence 4567899999999999999999999999999999999999999999999999998887765543333
Q ss_pred cccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhh
Q psy10286 132 PYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 204 (748)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~ 204 (748)
+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.+||+.
T Consensus 70 ---------------------~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 70 ---------------------PEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp ---------------------TTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ---------------------cccCHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999999999975
|
| >d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: B-cell lymphoma 6 (Bcl6) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.3e-07 Score=80.28 Aligned_cols=48 Identities=31% Similarity=0.691 Sum_probs=44.6
Q ss_pred hhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 220 CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 220 ~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
...++.+++|+|+|.+.+..+++.+++.+|++|+++.|++.|++||+.
T Consensus 74 ~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~ 121 (122)
T d1r29a_ 74 PEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 121 (122)
T ss_dssp HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence 356777999999999999999999999999999999999999999974
|
| >d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=7.5e-06 Score=68.65 Aligned_cols=72 Identities=15% Similarity=0.416 Sum_probs=54.9
Q ss_pred HHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 196 DACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 196 ~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
.+++.|+...+..+.-.......+...++.+++|+|||.+.+..+|+.+++.+|++|+++.|++.|++||+.
T Consensus 48 aa~S~~F~~lf~~~~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~ 119 (121)
T d1buoa_ 48 ACTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHCHHHHHHTTSCCSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccChhhhhhccCccceeecCCCCHHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344555554443322111122356678999999999999999999999999999999999999999999973
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=97.75 E-value=0.0019 Score=62.46 Aligned_cols=264 Identities=20% Similarity=0.192 Sum_probs=136.0
Q ss_pred EEEEEcCccCCCCCCcceEeecCCCCceeecccc-cccc-eEEecc-cccccCCCccceEEEEeCCCCceEEccCCCccc
Q psy10286 423 HIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE-TLSN-AVISTK-SCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLR 499 (748)
Q Consensus 423 ~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~-~~~~-~~~~~~-~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r 499 (748)
.+||.++.+ .++.++|+.+++....-+. .... ..+..+ ..++..+.....+..||..+++-... ++...
T Consensus 3 ~~yV~~~~~------~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~--~~~~~ 74 (301)
T d1l0qa2 3 FAYIANSES------DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--VPAGS 74 (301)
T ss_dssp EEEEEETTT------TEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--EECSS
T ss_pred EEEEEECCC------CEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee--eeccc
Confidence 577775532 3588999999887543221 1112 233433 33555555556899999988764332 22222
Q ss_pred ceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEE
Q psy10286 500 SRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVEC 575 (748)
Q Consensus 500 ~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~ 575 (748)
.-++++.. ++ .+++.+.. ...+..+|..+++....-... ......+.. ++ .+++.+..+ ..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~-----~~~~~ 142 (301)
T d1l0qa2 75 SPQGVAVSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-----KTVSV 142 (301)
T ss_dssp SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-----TEEEE
T ss_pred cccccccccccccccccccc-----cceeeecccccceeeeecccc--ccceEEEeecCCCeeeeeeccc-----cceee
Confidence 22344433 33 45554432 246778888887654432222 122233333 44 455554422 45677
Q ss_pred EeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCE
Q psy10286 576 YEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNK 651 (748)
Q Consensus 576 yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~ 651 (748)
++..+.......+... .-...+.. ++.+|+.+.. ...+..++.............. ...+.+.. ++.
T Consensus 143 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~ 213 (301)
T d1l0qa2 143 INTVTKAVINTVSVGR--SPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDTVKVEA--APSGIAVNPEGTK 213 (301)
T ss_dssp EETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECSS--EEEEEEECTTSSE
T ss_pred eeccccceeeecccCC--CceEEEeeccccceeeeccc-----ccccccccccceeeeecccccC--Ccceeeccccccc
Confidence 8887776544322221 11222222 4456665443 2356667766666554432221 11222222 455
Q ss_pred EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-C-CEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-M-GKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 652 i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
+|+.+. + ...+.++++|..+.+-.. .++....-.+++.. + .+|||.++.+ ++|.+||+++++-.
T Consensus 214 ~~v~~~-~--~~~~~v~v~D~~t~~~~~--~~~~~~~~~~va~spdg~~l~va~~~~-----~~i~v~D~~t~~~~ 279 (301)
T d1l0qa2 214 AYVTNV-D--KYFNTVSMIDTGTNKITA--RIPVGPDPAGIAVTPDGKKVYVALSFC-----NTVSVIDTATNTIT 279 (301)
T ss_dssp EEEEEE-C--SSCCEEEEEETTTTEEEE--EEECCSSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEE
T ss_pred cccccc-c--ceeeeeeeeecCCCeEEE--EEcCCCCEEEEEEeCCCCEEEEEECCC-----CeEEEEECCCCeEE
Confidence 665543 2 123579999998875432 22222222333333 4 4688887643 47999999998654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.22 E-value=0.052 Score=54.06 Aligned_cols=230 Identities=16% Similarity=0.193 Sum_probs=121.6
Q ss_pred ceEEEEeCCCCceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||..++++..+..+...... .+++.. ++...+.||.+ ..+..||+.+++|..............++..
T Consensus 29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D-----~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~ 103 (371)
T d1k8kc_ 29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD-----RNAYVWTLKGRTWKPTLVILRINRAARCVRW 103 (371)
T ss_dssp SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT-----SCEEEEEEETTEEEEEEECCCCSSCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC-----CeEEEEeeccccccccccccccccccccccc
Confidence 4688899988888776655322222 233333 56666677754 3588889989999876554433333333333
Q ss_pred --CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 555 --NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 555 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
+++.++.|+.++ .-.++.++...+.|.........+..-..+.+ ++..++.|+.++ .+..||......
T Consensus 104 ~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~-----~v~v~~~~~~~~ 175 (371)
T d1k8kc_ 104 APNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF-----KCRIFSAYIKEV 175 (371)
T ss_dssp CTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----CEEEEECCCTTT
T ss_pred ccccccceeecccC---cceeeeeecccccccccccccccccccccccccccccceeccccCc-----EEEEEeeccCcc
Confidence 666666666442 23566667666666554433322332222332 567777777654 466677654432
Q ss_pred EEccC-------C---------CCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCc-ceE
Q psy10286 631 TSVKP-------M---------LTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRS-RVA 691 (748)
Q Consensus 631 ~~~~~-------~---------p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~ 691 (748)
..... . .........+.+ ++..++.|+.+ ..+..||..+..= +..+..... -.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~--~~~~~~~~~~v~s 248 (371)
T d1k8kc_ 176 EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMA--VATLASETLPLLA 248 (371)
T ss_dssp SCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTE--EEEEECSSCCEEE
T ss_pred ccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----CcceEEeeecccc--eeeeeccccccee
Confidence 11100 0 001111112222 45666777654 4688888765431 211111111 122
Q ss_pred EE-EECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCC
Q psy10286 692 LV-ANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730 (748)
Q Consensus 692 ~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (748)
++ .-++++++ +|.++. ..++.++..+..|.....+
T Consensus 249 ~~fs~d~~~la-~g~d~~---~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 249 VTFITESSLVA-AGHDCF---PVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp EEEEETTEEEE-EETTSS---CEEEEEETTTTEEEECCCC
T ss_pred eeecCCCCEEE-EEcCCc---eEEEEeeCCCceEEEeeee
Confidence 22 23677665 454432 3578888888888765543
|
| >d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.0003 Score=55.47 Aligned_cols=82 Identities=21% Similarity=0.290 Sum_probs=55.7
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+. +|..|.+.+.+ |..|..++.||...... .+.....|.+++|
T Consensus 3 i~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~~--------------------------------~e~~~~~IpL~nV 49 (96)
T d2c9wc1 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQF--------------------------------AENETNEVNFREI 49 (96)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHC--------------------------------------------CEEECTTC
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhccCcc--------------------------------ccCCCCeeECCCC
Confidence 45554 78899999988 66799999999653211 1222334555999
Q ss_pred CHHHHHHHHHhhh-----ce------eEEeechhHHHHHHHHHHhcc
Q psy10286 156 DAVAMEALINFVY-----SG------RVTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 156 ~~~~~~~~l~flY-----tg------~~~i~~~~v~~ll~~A~~l~i 191 (748)
+...++.+++|++ .. +.+++.+.+.+|+.||++|++
T Consensus 50 ~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd~ 96 (96)
T d2c9wc1 50 PSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhcC
Confidence 9999999999995 22 233777789999999999974
|
| >d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Potassium channel kv4.2 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.00 E-value=0.00017 Score=57.94 Aligned_cols=91 Identities=11% Similarity=0.165 Sum_probs=63.4
Q ss_pred EEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|.|+|+.|...+..|+... .+|..++...+.......+- -+=
T Consensus 2 I~LNVGG~~f~t~~~TL~~~p~s~l~~~~~~~~~~~~~~~~F-----------------------------------iDR 46 (105)
T d1nn7a_ 2 IVLNVSGTRFQTWQDTLERYPDTLLGSSERDFFYHPETQQYF-----------------------------------FDR 46 (105)
T ss_dssp EEEEETTEEEEECHHHHHTSCSSSTTSGGGGGGEEGGGTEEE-----------------------------------ECS
T ss_pred EEEEECCEEEEEeHHHHhcCCCCCccccccccCcCCCCCcEE-----------------------------------EeC
Confidence 789999999999999996543 33444443333222222222 246
Q ss_pred CHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchhHH--HHHHHHh
Q psy10286 156 DAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQKVA--DACADFL 202 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~l~--~~c~~~l 202 (748)
++..|+.+|+|+.+|.+.+..+ ....+++-|++|+|+++. ..|.+.+
T Consensus 47 dp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~fygi~~~~l~~cc~~~~ 96 (105)
T d1nn7a_ 47 DPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEY 96 (105)
T ss_dssp CTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHHHHHH
T ss_pred CHHHHHHHHHHHhcCccccCCCccHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999999887665 478888999999997642 3444443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=96.89 E-value=0.022 Score=54.46 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=111.7
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+.+..+|+.+++....-+.. ..-+++++- +.++|+.++.+ +.+.+||..+++-... ++.....+.++
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~~~~-----~~i~v~d~~t~~~~~~--~~~~~~~~~~~ 80 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS-----NDVSIIDTATNNVIAT--VPAGSSPQGVA 80 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG-----TEEEEEETTTTEEEEE--EECSSSEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEECCC-----CEEEEEECCCCceeee--eeccccccccc
Confidence 3456889999999865433222 222344443 34688877533 4799999998864332 22222334444
Q ss_pred EE-CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccCeEEEEECCCC
Q psy10286 553 AL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 553 ~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
.. ++ .+++.+.. -..+..+|..+++....-... .....++.. ++ .+++.+..+ ..+..++..+.
T Consensus 81 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~~~~~~~~~~-----~~~~~~~~~~~ 148 (301)
T d1l0qa2 81 VSPDGKQVYVTNMA-----SSTLSVIDTTSNTVAGTVKTG--KSPLGLALSPDGKKLYVTNNGD-----KTVSVINTVTK 148 (301)
T ss_dssp ECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEETTT-----TEEEEEETTTT
T ss_pred cccccccccccccc-----cceeeecccccceeeeecccc--ccceEEEeecCCCeeeeeeccc-----cceeeeecccc
Confidence 43 44 45554432 246778888887654432221 122233332 34 555554432 35777888777
Q ss_pred cEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCC
Q psy10286 629 EWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYD 706 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 706 (748)
........ .......+.. ++.+|+.+.. ...+..++...............-.+.....-++.+|+.+..
T Consensus 149 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~- 220 (301)
T d1l0qa2 149 AVINTVSV--GRSPKGIAVTPDGTKVYVANFD-----SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVD- 220 (301)
T ss_dssp EEEEEEEC--CSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEEC-
T ss_pred ceeeeccc--CCCceEEEeeccccceeeeccc-----ccccccccccceeeeecccccCCcceeecccccccccccccc-
Confidence 65443221 1111222222 3455555432 235667777766655543322211111111225566665432
Q ss_pred CCCCCCeEEEEeCCCCce
Q psy10286 707 GVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W 724 (748)
.....+.++|+.+++-
T Consensus 221 --~~~~~v~v~D~~t~~~ 236 (301)
T d1l0qa2 221 --KYFNTVSMIDTGTNKI 236 (301)
T ss_dssp --SSCCEEEEEETTTTEE
T ss_pred --ceeeeeeeeecCCCeE
Confidence 1235789999887653
|
| >d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Elongin C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.87 E-value=0.0011 Score=52.57 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=60.8
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+- +|..|.+.+.+ |..|..++.||.....+. ...|. +++|
T Consensus 6 v~L~SsDg~~f~V~~~~-A~~S~tI~~ml~~~~~e~-~~~Ip----------------------------------l~~V 49 (99)
T d1hv2a_ 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRES-KGRIE----------------------------------LKQF 49 (99)
T ss_dssp EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTC-TTEEE----------------------------------ETTS
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHHccCCCC-cCccc----------------------------------cCCC
Confidence 56665 78899999988 568999999997654332 22344 4999
Q ss_pred CHHHHHHHHHhhhc--------------eeEEeechhHHHHHHHHHHhcc
Q psy10286 156 DAVAMEALINFVYS--------------GRVTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 156 ~~~~~~~~l~flYt--------------g~~~i~~~~v~~ll~~A~~l~i 191 (748)
+..+++.+++|++- .+.+++.+.+.+|+.||++|+|
T Consensus 50 ~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyLdI 99 (99)
T d1hv2a_ 50 DSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence 99999999999962 1344667779999999999985
|
| >d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: akv3.1 voltage-gated potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=96.83 E-value=0.00012 Score=58.80 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=63.7
Q ss_pred EEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|.|+|+.|...+..|.... .+|..++.+.+.... ...++- -+=
T Consensus 4 I~LNVGG~~F~t~~~tL~~~~~s~l~~~~~~~~~~~~---------------------------------~~~~~f-iDR 49 (103)
T d3kvta_ 4 VIINVGGIRHETYKATLKKIPATRLSRLTEGMLNYDP---------------------------------VLNEYF-FDR 49 (103)
T ss_dssp EEEEETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEET---------------------------------TTTEEE-ECS
T ss_pred EEEEECCEEEEEeHHHHhhCccchhHHHHcCCCccCC---------------------------------CCCcEE-ecC
Confidence 788999999999999997543 355556554321111 111222 267
Q ss_pred CHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHhcchh-HHHHHH
Q psy10286 156 DAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFLQMQK-VADACA 199 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l~i~~-l~~~c~ 199 (748)
+|..|+.+|+|+.+|.+.++.+ .+..+++-|++|+|+. +++.|+
T Consensus 50 dp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~yygi~~~~l~~Cc 95 (103)
T d3kvta_ 50 HPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCC 95 (103)
T ss_dssp CTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGG
T ss_pred CHHHHHHHHHHHccCCcccccccCHHHHHHHHHHcCCCHHHHHHHh
Confidence 8999999999999999987766 4777889999999964 555553
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.58 E-value=0.35 Score=46.33 Aligned_cols=229 Identities=13% Similarity=0.110 Sum_probs=109.6
Q ss_pred ecccccccCCCccceEEEEeCCCCceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC
Q psy10286 464 STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP 541 (748)
Q Consensus 464 ~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~ 541 (748)
.+++.....|..-..+..||..++.......++..... .+++.. ++..++.+|.+. ...+.++|..+.+- ...
T Consensus 67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~---~~~~~v~~~~~~~~--~~~ 141 (311)
T d1nr0a1 67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR---ERFGHVFLFDTGTS--NGN 141 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS---SCSEEEEETTTCCB--CBC
T ss_pred eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccc---cccccccccccccc--ccc
Confidence 34443333344445788888887764322222211111 122222 566666666322 12355566655432 122
Q ss_pred CCCCcceeEEEEE--CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcc
Q psy10286 542 MCFKRSAVGAAAL--ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSI 616 (748)
Q Consensus 542 ~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~ 616 (748)
+......-..+.+ ++ .+++.|+.+ ..+..||..+.+-...-. .....-..+.. ++..++.||.++
T Consensus 142 l~~h~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~~--~~~~~i~~v~~~p~~~~l~~~~~d~--- 211 (311)
T d1nr0a1 142 LTGQARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGDG--- 211 (311)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred ccccccccccccccccceeeecccccc-----cccccccccccccccccc--cccccccccccCccccccccccccc---
Confidence 2211111222223 33 456677754 357888888765433221 11111122222 566677777643
Q ss_pred cCeEEEEECCCCcEEEccCCC-CCCc----ceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-ccCCCCCC-
Q psy10286 617 FDSVERYDPKTDEWTSVKPML-TKRC----RLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-IASMNVMR- 687 (748)
Q Consensus 617 ~~~~~~yd~~~~~W~~~~~~p-~~r~----~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~r- 687 (748)
.+..||..+.+-...-... .... ....+.+ +++.++.||.+ ..+.+||..+.+-.. +.. ....
T Consensus 212 --~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D-----g~v~iwd~~t~~~~~~l~~-~~~~~ 283 (311)
T d1nr0a1 212 --TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD-----KTIKIWNVATLKVEKTIPV-GTRIE 283 (311)
T ss_dssp --CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEEC-CSSGG
T ss_pred --cccccccccccccccccccccccccccccccccccCCCCCEEEEEeCC-----CeEEEEECCCCcEEEEEEC-CCCcc
Confidence 5888998776543321111 1111 1222333 56777788764 368899998876432 221 1111
Q ss_pred cceEEEEECCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 688 SRVALVANMGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 688 ~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
.....+...+..++.||.++ .+.++||+
T Consensus 284 ~~~~~~~~~~~~l~s~s~dG-----~i~~wd~d 311 (311)
T d1nr0a1 284 DQQLGIIWTKQALVSISANG-----FINFVNPE 311 (311)
T ss_dssp GCEEEEEECSSCEEEEETTC-----CEEEEETT
T ss_pred ceEEEEEecCCEEEEEECCC-----EEEEEeCC
Confidence 22223334444455555443 57888874
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.48 E-value=0.1 Score=46.44 Aligned_cols=144 Identities=13% Similarity=0.125 Sum_probs=85.7
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE--c----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK--V----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (748)
+++.++|.+|+|=| ..+|+++.....+.. + +.+|.... ++... ++++|++-| +.+|
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~~ID--AAf~~~~~~~~yffkg-------~~~w 76 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNRID--AAYEHPSHDLIFIFRG-------RKFW 76 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSSCC--EEEEETTTTEEEEEET-------TEEE
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCCccc--ceEEEcCCCEEEEEcC-------CEEE
Confidence 56677999999977 457777765544432 1 34554322 22332 688999988 4678
Q ss_pred EEeCCCCeE---EEccC--CCCCCcce-EEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE-----cc----CCC
Q psy10286 575 CYEPDKDQW---RIVKS--MQKHRSAG-GVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----VK----PML 637 (748)
Q Consensus 575 ~yd~~~~~W---~~~~~--~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~----~~p 637 (748)
+|+..+-.+ +.+.. +|.+-..- ++... ++++|+|-|. ..|+||..++.-.. +. .+|
T Consensus 77 ~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~-------~y~~y~~~~~~~~~~~pk~I~~~w~gvp 149 (192)
T d1pexa_ 77 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN-------QVWRYDDTNHIMDKDYPRLIEEDFPGIG 149 (192)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT-------EEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC-------EEEEEcCccccccCCCcEEHhhcCCCCC
Confidence 887554332 22222 12221122 23332 6899999884 68999987664221 11 122
Q ss_pred CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 638 TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 638 ~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
. + -.++...++++|++-| +..++||..+++-.
T Consensus 150 ~-~-vdAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~ 181 (192)
T d1pexa_ 150 D-K-VDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIV 181 (192)
T ss_dssp S-C-CSEEEEETTEEEEEET-------TEEEEEETTTTEEE
T ss_pred C-C-ceEEEEeCCEEEEEEC-------CEEEEEeCCcCeEc
Confidence 1 2 2344566999999987 68889998776543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.35 E-value=0.44 Score=45.39 Aligned_cols=140 Identities=16% Similarity=0.347 Sum_probs=74.1
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++.+++.|+.+ ..+..||..+..-... +...... .+++.. ++..++.|+.++ .+..||........
T Consensus 195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~d~-----~i~~~~~~~~~~~~ 262 (340)
T d1tbga_ 195 DTRLFVSGACD-----ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDDA-----TCRLFDLRADQELM 262 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEE
T ss_pred ccceeEEeecC-----ceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeCCC-----eEEEEeeccccccc
Confidence 55666666644 4677888877653221 1111111 122222 566777777643 57888888776544
Q ss_pred ccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCC
Q psy10286 633 VKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGV 708 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 708 (748)
.-...........+.+ ++.+++.|+.+ ..|.+||..+.+- +..+........++.+ ++++++.||.++
T Consensus 263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~d-----g~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg- 334 (340)
T d1tbga_ 263 TYSHDNIICGITSVSFSKSGRLLLAGYDD-----FNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDS- 334 (340)
T ss_dssp EECCTTCCSCEEEEEECSSSCEEEEEETT-----SCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTS-
T ss_pred ccccccccCceEEEEECCCCCEEEEEECC-----CEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEccCC-
Confidence 3333322232333333 56777788765 3588899876543 3223221122222222 567777787653
Q ss_pred CCCCeEEEEe
Q psy10286 709 SNLPTVEVYD 718 (748)
Q Consensus 709 ~~~~~v~~yd 718 (748)
.|.++|
T Consensus 335 ----~v~iWd 340 (340)
T d1tbga_ 335 ----FLKIWN 340 (340)
T ss_dssp ----CEEEEC
T ss_pred ----EEEEeC
Confidence 355554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.24 E-value=0.32 Score=46.36 Aligned_cols=202 Identities=10% Similarity=0.022 Sum_probs=105.5
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC----CcceeEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF----KRSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~----~r~~~~~ 551 (748)
..++++|+.+++-+.. .+|..- .+++. -+|.+++... +.+.+||+.+++++.+..... .|.+...
T Consensus 40 ~~I~r~d~~~g~~~~~-~~~~~~--~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~ 109 (295)
T d2ghsa1 40 RELHELHLASGRKTVH-ALPFMG--SALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGR 109 (295)
T ss_dssp TEEEEEETTTTEEEEE-ECSSCE--EEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEE
T ss_pred CEEEEEECCCCeEEEE-ECCCCc--EEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeecCCCcccceeeE
Confidence 5789999998865433 222211 22332 3777776432 358999999999988755432 2333333
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc-CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK-SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
+--+|.+|+--... ......-..|....++.+.+. .+..+ -+.+.. ++.+|+..-. ...+++|+...+
T Consensus 110 vd~~G~iw~~~~~~-~~~~~~g~l~~~~~g~~~~~~~~~~~~---Ng~~~s~d~~~l~~~dt~-----~~~I~~~~~d~~ 180 (295)
T d2ghsa1 110 MHPSGALWIGTMGR-KAETGAGSIYHVAKGKVTKLFADISIP---NSICFSPDGTTGYFVDTK-----VNRLMRVPLDAR 180 (295)
T ss_dssp ECTTSCEEEEEEET-TCCTTCEEEEEEETTEEEEEEEEESSE---EEEEECTTSCEEEEEETT-----TCEEEEEEBCTT
T ss_pred ECCCCCEEEEeccc-cccccceeEeeecCCcEEEEeeccCCc---ceeeecCCCceEEEeecc-----cceeeEeeeccc
Confidence 33478888753322 111223334444455554443 22211 122222 4457776543 357888875432
Q ss_pred c------EEEccCCCCC-CcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEEC----
Q psy10286 629 E------WTSVKPMLTK-RCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM---- 696 (748)
Q Consensus 629 ~------W~~~~~~p~~-r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~---- 696 (748)
. .......+.. ..-.++++- +|.||+..- . -..|.+||++......+ .+|.++ .+++..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~-~----~g~V~~~dp~G~~~~~i-~lP~~~--~T~~~FGG~d~ 252 (295)
T d2ghsa1 181 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW-G----EGAVDRYDTDGNHIARY-EVPGKQ--TTCPAFIGPDA 252 (295)
T ss_dssp TCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE-T----TTEEEEECTTCCEEEEE-ECSCSB--EEEEEEESTTS
T ss_pred ccccccceEEEeccCcccccccceEEcCCCCEEeeee-C----CCceEEecCCCcEeeEe-cCCCCc--eEEEEEeCCCC
Confidence 1 1111111211 122344432 578888631 1 14799999987777666 345443 3334442
Q ss_pred CEEEEEeCC
Q psy10286 697 GKLWAIGGY 705 (748)
Q Consensus 697 ~~l~v~GG~ 705 (748)
+.|||.-..
T Consensus 253 ~~LyvTta~ 261 (295)
T d2ghsa1 253 SRLLVTSAR 261 (295)
T ss_dssp CEEEEEEBC
T ss_pred CEEEEEECC
Confidence 679988654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.17 E-value=0.56 Score=44.78 Aligned_cols=190 Identities=12% Similarity=0.090 Sum_probs=96.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcce-eEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSA-VGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++...+.|+.+ ..+..||..+........++..... .+++.. +++.++.+|.+.. ..+.++|..+.+-
T Consensus 69 ~g~~latg~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~~~-- 138 (311)
T d1nr0a1 69 SGYYCASGDVH-----GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGHVFLFDTGTS-- 138 (311)
T ss_dssp TSSEEEEEETT-----SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEEEEETTTCCB--
T ss_pred CCCeEeccccC-----ceEeeeeeeccccccccccccccCcccccccccccccccccccccc---ccccccccccccc--
Confidence 67777888865 3688889887754322222111111 122222 5666666664321 2345666655432
Q ss_pred ccCCCCCCcceEEEEE--C-CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCC
Q psy10286 586 VKSMQKHRSAGGVIAF--D-SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDG 660 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 660 (748)
...+......-..+.+ + ..+++.|+.++ .+..||..+.+-...-. ........+.+ ++..++.||.+
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~-----~i~i~d~~~~~~~~~~~--~~~~~i~~v~~~p~~~~l~~~~~d- 210 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDN-----TVAIFEGPPFKFKSTFG--EHTKFVHSVRYNPDGSLFASTGGD- 210 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTS-----CEEEEETTTBEEEEEEC--CCSSCEEEEEECTTSSEEEEEETT-
T ss_pred cccccccccccccccccccceeeeccccccc-----ccccccccccccccccc--cccccccccccCcccccccccccc-
Confidence 1122211111122222 3 34566677643 58889988765433221 11122223333 56677777754
Q ss_pred CccccEEEEEeCCCCcEEEc-cCCCCCCc----ceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 661 AIFLQSVEMYDPITDEWKMI-ASMNVMRS----RVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 661 ~~~~~~v~~yd~~~~~W~~~-~~~p~~r~----~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
..+..||..+.+-... ........ ...++.+ +++.++.||.++ .|.+||..+++-
T Consensus 211 ----~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg-----~v~iwd~~t~~~ 272 (311)
T d1nr0a1 211 ----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----TIKIWNVATLKV 272 (311)
T ss_dssp ----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEE
T ss_pred ----ccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCC-----eEEEEECCCCcE
Confidence 3578899877654332 21111111 1223333 577777887543 689999988754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.17 E-value=0.47 Score=46.57 Aligned_cols=236 Identities=14% Similarity=0.112 Sum_probs=119.5
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeecccc-----cccceEEecccccccCCCccceEEEEeCCCCceEEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE-----TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~ 495 (748)
++..+++|+.+ ..+..||..++++...... .+....+.+++.....+..-..+..+|..+++|.....+
T Consensus 18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~ 91 (371)
T d1k8kc_ 18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI 91 (371)
T ss_dssp TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC
T ss_pred CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc
Confidence 44566667642 2588899888887655432 121222333333322222334688889989998876544
Q ss_pred CcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCc
Q psy10286 496 SMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLN 571 (748)
Q Consensus 496 ~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~ 571 (748)
.........+.. ++..++.|+.++ .-.+|.++.....|........-+..-.++.. +++.++.|+.++
T Consensus 92 ~~~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~----- 163 (371)
T d1k8kc_ 92 LRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF----- 163 (371)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS-----
T ss_pred ccccccccccccccccccceeecccC---cceeeeeecccccccccccccccccccccccccccccceeccccCc-----
Confidence 433332333333 566666676432 23567777777766654333222222222333 667777787653
Q ss_pred eEEEEeCCCCeEEEcc-------CC---------CCCCc-ceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 572 TVECYEPDKDQWRIVK-------SM---------QKHRS-AGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 572 ~~~~yd~~~~~W~~~~-------~~---------~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
.+..||.......... .. ..... -++++. -++..++.|+.+ ..+..+|..+..= +
T Consensus 164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d-----~~i~iwd~~~~~~--~ 236 (371)
T d1k8kc_ 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD-----STVCLADADKKMA--V 236 (371)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT-----TEEEEEEGGGTTE--E
T ss_pred EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccC-----CcceEEeeecccc--e
Confidence 4556665543321110 00 00011 122222 245566667654 3577888765532 1
Q ss_pred cCCCCCCc-ceeEE-EECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 634 KPMLTKRC-RLGVA-ALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 634 ~~~p~~r~-~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
..+..... -.+++ .-++++++. |.++. ..++.++.....|...+
T Consensus 237 ~~~~~~~~~v~s~~fs~d~~~la~-g~d~~---~~~~~~~~~~~~~~~~~ 282 (371)
T d1k8kc_ 237 ATLASETLPLLAVTFITESSLVAA-GHDCF---PVLFTYDSAAGKLSFGG 282 (371)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEE-ETTSS---CEEEEEETTTTEEEECC
T ss_pred eeeecccccceeeeecCCCCEEEE-EcCCc---eEEEEeeCCCceEEEee
Confidence 11111111 12222 336776654 44432 35788888888887654
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.16 E-value=0.043 Score=49.04 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=85.7
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE--c----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK--V----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (748)
+++.++|.+|+|-| ..+|+++........ + +.+|.... ++... ++++|++-| +..+
T Consensus 16 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~glp~~ID--AAf~~~~~~~~yfFkG-------~~y~ 79 (195)
T d1su3a2 16 AITTIRGEVMFFKD-------RFYMRTNPFYPEVELNFISVFWPQLPNGLE--AAYEFADRDEVRFFKG-------NKYW 79 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEECCTTSSSCEEEEGGGTCTTSCSSCC--EEEEEGGGTEEEEEET-------TEEE
T ss_pred EEEEcCCeEEEEeC-------CEEEEeeCCCCccCccchHhhCcCCCCccc--ceEEecCCcEEEEECC-------cEEE
Confidence 56678999999987 346666655544321 1 23444332 33333 689999988 5788
Q ss_pred EEeCCCCeE---EEcc---CCCCCCcceEEE-EE--CCEEEEEccCCCCcccCeEEEEECCCCcEE-----Ecc----CC
Q psy10286 575 CYEPDKDQW---RIVK---SMQKHRSAGGVI-AF--DSYVYALGGHDGLSIFDSVERYDPKTDEWT-----SVK----PM 636 (748)
Q Consensus 575 ~yd~~~~~W---~~~~---~~~~~r~~~~~~-~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-----~~~----~~ 636 (748)
+|+..+..+ ..+. .+|.....--++ .. ++++|+|-|. ..|+||..+++-. .+. .+
T Consensus 80 ~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG~-------~y~ry~~~~~~vd~gyPk~I~~~w~Gv 152 (195)
T d1su3a2 80 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVAN-------KYWRYDEYKRSMDPGYPKMIAHDFPGI 152 (195)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeCC-------EEEEEeccCccccCCcccccccccCCC
Confidence 887432111 1111 123222222222 32 5799999884 7899998886432 111 22
Q ss_pred CCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE
Q psy10286 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679 (748)
Q Consensus 637 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (748)
|. .-.++...++++|++-| +..+.||+.+++-..
T Consensus 153 p~--~iDAAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~ 186 (195)
T d1su3a2 153 GH--KVDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 186 (195)
T ss_dssp CS--CCSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CC--CccEEEEECCeEEEEEC-------CEEEEEeCCcCEEEe
Confidence 22 22345566999999988 688999988765443
|
| >d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase-3 (MMP-13), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.25 Score=43.77 Aligned_cols=145 Identities=10% Similarity=0.134 Sum_probs=85.0
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc------cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV------KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~------~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
+++.++|++|+|-| ..+|+++.....+... +.+|.. -. ++.+. ++.+|+|-|. .+|
T Consensus 13 Av~~~~g~~y~Fkg-------~~~wr~~~~~~~~~p~~i~~~w~~lp~~-ID-AAf~~~~~~~~yffkg~-------~~w 76 (192)
T d1pexa_ 13 AITSLRGETMIFKD-------RFFWRLHPQQVDAELFLTKSFWPELPNR-ID-AAYEHPSHDLIFIFRGR-------KFW 76 (192)
T ss_dssp EEEEETTEEEEEET-------TEEEEECSSSSCCEEEEHHHHCTTSCSS-CC-EEEEETTTTEEEEEETT-------EEE
T ss_pred EEEEcCCeEEEEEC-------CEEEEEcCCCCCCcccchhhhCcCCCCc-cc-ceEEEcCCCEEEEEcCC-------EEE
Confidence 56677999999987 4566666554443321 234432 12 23333 7899998884 688
Q ss_pred EEECCCCcE---EEccC--CCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEE-----Ec----cCCC
Q psy10286 622 RYDPKTDEW---TSVKP--MLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWK-----MI----ASMN 684 (748)
Q Consensus 622 ~yd~~~~~W---~~~~~--~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~p 684 (748)
+|+..+..+ ..+.. +|.+-....++.. ++++|++-| +..|.||..++.=. .+ +.+|
T Consensus 77 ~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg-------~~y~~y~~~~~~~~~~~pk~I~~~w~gvp 149 (192)
T d1pexa_ 77 ALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG-------NQVWRYDDTNHIMDKDYPRLIEEDFPGIG 149 (192)
T ss_dssp EESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET-------TEEEEEETTTTEECSSCCCBHHHHSTTSC
T ss_pred EEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeC-------CEEEEEcCccccccCCCcEEHhhcCCCCC
Confidence 887654332 22322 1222122233332 589999987 67899998765421 11 1222
Q ss_pred CCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 685 ~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
. + -.++...++++|+|-| +..+.||..+++-..
T Consensus 150 ~-~-vdAa~~~~g~~YfF~g-------~~y~r~~~~~~~v~~ 182 (192)
T d1pexa_ 150 D-K-VDAVYEKNGYIYFFNG-------PIQFEYSIWSNRIVR 182 (192)
T ss_dssp S-C-CSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred C-C-ceEEEEeCCEEEEEEC-------CEEEEEeCCcCeEcc
Confidence 2 2 2234456999999977 478899987765443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=96.07 E-value=0.034 Score=54.13 Aligned_cols=277 Identities=13% Similarity=0.081 Sum_probs=132.4
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeec---ccc-cccceEEecc-cccccCCCccceEEEEeCCCCceEEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA---EEE-TLSNAVISTK-SCLTKAGDSLSTVEVFDPLVGRWQMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~---~~~-~~~~~~~~~~-~~~~~~g~~~~~~~~yd~~~~~W~~~~~~ 495 (748)
+++.+++|+.+ +++..||..+++-... +.. ......+..+ ..++..+.....+..||..+.+=......
T Consensus 7 ~~~~l~~~~~~------~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~ 80 (346)
T d1jmxb_ 7 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 80 (346)
T ss_dssp TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred CCcEEEEEcCC------CEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence 55667777652 3699999999876542 212 1223344444 44555555557899999988754322211
Q ss_pred Ccc-----cceeEEEEE--CCEEEEEccCCC------CCCCCeEEEEECCCCeEEE-ccCCCCCcce-eEEEEECCEEEE
Q psy10286 496 SML-----RSRVGVAVM--KNRLYAFGGYNG------SERLSTVEEFDPVRRVWNK-VSPMCFKRSA-VGAAALNDKLYV 560 (748)
Q Consensus 496 ~~~-----r~~~~~~~~--~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~-~~~~~~~~~iyv 560 (748)
... +.-.+++.- +..+|+.+.... ......+..+|..+++-.. +.....+... .....-++++|+
T Consensus 81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 111 111222222 456777654221 1123456667766543111 1111111111 122233667887
Q ss_pred EeCCCCCCCCceEEEEeCCCCeEEEccCCCC-C---------CcceEEEEECCEEEEEccC---C-------CCcccCeE
Q psy10286 561 CGGYDGVSSLNTVECYEPDKDQWRIVKSMQK-H---------RSAGGVIAFDSYVYALGGH---D-------GLSIFDSV 620 (748)
Q Consensus 561 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~---------r~~~~~~~~~~~iyv~GG~---~-------~~~~~~~~ 620 (748)
.++ ++..+|..+......-+... + +........++.+.+.... . .......+
T Consensus 161 ~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
T d1jmxb_ 161 AGP--------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232 (346)
T ss_dssp ESS--------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred eCC--------cceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence 754 45667777666544322111 1 1111111112222221110 0 01112346
Q ss_pred EEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECCE
Q psy10286 621 ERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NMGK 698 (748)
Q Consensus 621 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~ 698 (748)
..+|..+.........+..+...+.... ++..+++++ .+.+..||..+.+....-..... -.+++. -+|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~v~d~~~~~~~~~~~~~~~--~~~va~s~DG~ 304 (346)
T d1jmxb_ 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV------LNRLAKYDLKQRKLIKAANLDHT--YYCVAFDKKGD 304 (346)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE------ESEEEEEETTTTEEEEEEECSSC--CCEEEECSSSS
T ss_pred EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec------CCeEEEEECCCCcEEEEEcCCCC--EEEEEEcCCCC
Confidence 6777777665544333333333333332 222223332 25789999999876654333222 223333 3666
Q ss_pred EEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 699 LWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 699 l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.+.+||.+ .+|.+||+++.+=
T Consensus 305 ~l~v~~~d-----~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 305 KLYLGGTF-----NDLAVFNPDTLEK 325 (346)
T ss_dssp CEEEESBS-----SEEEEEETTTTEE
T ss_pred EEEEEeCC-----CcEEEEECccCCE
Confidence 66667754 3699999987653
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.13 Score=45.70 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=83.6
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEE----Ec----cCCCCCcceeEEEE--ECCEEEEEeCCCCCCCCce
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN----KV----SPMCFKRSAVGAAA--LNDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~----~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~ 572 (748)
+++.++|.+|+|-| ..+|+|+.....+. .+ +.+|.... ++.. .++++|.|-| +.
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~ID--AAf~~~~~~k~yfFkg-------~~ 74 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRKLD--SVFEEPLSKKLFFFSG-------RQ 74 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSSCS--EEEECTTTCCEEEEET-------TE
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCCCCcc--EEEEECCCCEEEEEec-------CE
Confidence 45677999999977 46788875543321 12 34543322 2222 2679999977 46
Q ss_pred EEEEeCCCCeE-EEccC--CCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-----ccC-CC-CCC
Q psy10286 573 VECYEPDKDQW-RIVKS--MQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-----VKP-ML-TKR 640 (748)
Q Consensus 573 ~~~yd~~~~~W-~~~~~--~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-----~~~-~p-~~r 640 (748)
+|+|+-.+-.. ..+.. +|.. +..++...-++++|+|=|. ..|+||..+++-.. +.. .+ .|.
T Consensus 75 ~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG~-------~y~ryd~~~~~v~~gyPk~i~~~w~gvp~ 147 (195)
T d1itva_ 75 VWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSGR-------RLWRFDVKAQMVDPRSASEVDRMFPGVPL 147 (195)
T ss_dssp EEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEETT-------EEEEEETTTTEECGGGCEEHHHHSTTSCS
T ss_pred EEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEecc-------EEEEEeCCcccccCCCccchhhhcCCCCC
Confidence 78887432111 12222 2222 2222222236899999774 79999988774321 110 11 222
Q ss_pred cceeEEEECCEEEEEeccCCCccccEEEEEeCCCC
Q psy10286 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 641 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
.-.++...++.+|++-| +..|+||..+.
T Consensus 148 ~idaAf~~~~~~Yffkg-------~~y~r~~~~~~ 175 (195)
T d1itva_ 148 DTHDVFQFREKAYFCQD-------RFYWRVSSRSE 175 (195)
T ss_dssp SCSEEEEETTEEEEEET-------TEEEEEECCTT
T ss_pred CCcEEEEeCCcEEEEEC-------CEEEEEcCCce
Confidence 34556677999999987 57788887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.95 E-value=0.68 Score=43.42 Aligned_cols=226 Identities=9% Similarity=0.104 Sum_probs=118.4
Q ss_pred ccccccCCCccceEEEEeCCCCceEE-ccCC--C--cccceeEEEEEC--CEEEE-EccCCCCCCCCeEEEEECCCCeEE
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLVGRWQM-AEAM--S--MLRSRVGVAVMK--NRLYA-FGGYNGSERLSTVEEFDPVRRVWN 537 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~~~W~~-~~~~--~--~~r~~~~~~~~~--~~iyv-~GG~~~~~~~~~v~~yd~~t~~W~ 537 (748)
++.+++.....+.+..||+.. ++.. .+.. + ....-...+..+ +..++ ..+ ....+..+++....+.
T Consensus 33 dg~i~VaD~~n~rI~v~d~~G-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~g~~~~ 106 (279)
T d1q7fa_ 33 QNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQIYNQYGQFVR 106 (279)
T ss_dssp TCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEEECTTSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCC-CEEEEecccCCCcccccccccccccccccccceeccC-----Ccccccccccccccee
Confidence 334444434446788898764 3322 2211 1 112223344442 33333 222 2246788888777666
Q ss_pred EccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCc
Q psy10286 538 KVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLS 615 (748)
Q Consensus 538 ~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~ 615 (748)
...... ....++.++. ++.+|+.... ...+.+||+..+.-..............++.- ++.+|+....
T Consensus 107 ~~~~~~-~~~p~~~avd~~G~i~v~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~---- 176 (279)
T d1q7fa_ 107 KFGATI-LQHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR---- 176 (279)
T ss_dssp EECTTT-CSCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG----
T ss_pred ecCCCc-ccccceeccccCCcEEEEeec-----cceeeEeccCCceeecccccccccccceeeeccceeEEeeecc----
Confidence 653322 2222344443 6788888653 35688899887665544332222223333333 6789988765
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-CCCCCCcceEEE
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-SMNVMRSRVALV 693 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~ 693 (748)
...++.||+.......+........-.++++- +|.|||....++ ..|.+|++.-.-=..+. ..... ..++++
T Consensus 177 -~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~----~~v~~f~~~G~~~~~~~~~~~~~-~p~~va 250 (279)
T d1q7fa_ 177 -AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQLISALESKVKHA-QCFDVA 250 (279)
T ss_dssp -GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSCEEEEEEESSCCS-CEEEEE
T ss_pred -ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCC----cEEEEECCCCCEEEEEeCCCCCC-CEeEEE
Confidence 45799999987766666432211222344432 578999864332 35888987543212222 22222 224444
Q ss_pred EE-CCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 694 AN-MGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 694 ~~-~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
+. ++.|||..+ .+.|.+|.-
T Consensus 251 v~~dG~l~V~~~------n~~v~~fr~ 271 (279)
T d1q7fa_ 251 LMDDGSVVLASK------DYRLYIYRY 271 (279)
T ss_dssp EETTTEEEEEET------TTEEEEEEC
T ss_pred EeCCCcEEEEeC------CCeEEEEEe
Confidence 43 789888643 135666654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.68 Score=45.20 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=100.9
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
..+..+|..+++......-... .-.++... ++...+.|+.+ ..+..+|..+..-......... ...++..
T Consensus 143 g~v~i~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~ 214 (388)
T d1erja_ 143 RLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSLTLSIEDG--VTTVAVSP 214 (388)
T ss_dssp SCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECSSC--EEEEEECS
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccc-----eeeeeeeccccccccccccccc--cccccccC
Confidence 4577888877765443221111 11122222 44455555532 4678888887765443322222 1222222
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CC----Ccc-eEEEEE-CCEEEEEccCCCCcccCeEEEEECC
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KH----RSA-GGVIAF-DSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~----r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
++.+++.|+.+ ..+..||..+......-..+ .. ... .+++.. ++..++.|+.++ .+..||..
T Consensus 215 ~~~~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~-----~i~iwd~~ 284 (388)
T d1erja_ 215 GDGKYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-----SVKLWNLQ 284 (388)
T ss_dssp TTCCEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS-----EEEEEEC-
T ss_pred CCCCeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC-----cEEEEecc
Confidence 56777777755 35788888877654332111 11 111 122222 566666776643 57778876
Q ss_pred CCcEEEccCCC----------CCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce-EEE
Q psy10286 627 TDEWTSVKPML----------TKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV-ALV 693 (748)
Q Consensus 627 ~~~W~~~~~~p----------~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~ 693 (748)
+.........+ ........+.+ +++.++.|+.+ ..|.+||..+.+-.. .+....... ++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~vwd~~~~~~~~--~l~~H~~~V~~~~ 357 (388)
T d1erja_ 285 NANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGNPLL--MLQGHRNSVISVA 357 (388)
T ss_dssp --------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCCEEE--EEECCSSCEEEEE
T ss_pred CCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcEEE--EEeCCCCCEEEEE
Confidence 54432211111 01111122222 56677777754 468899988765332 121111111 111
Q ss_pred EE-------CCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 694 AN-------MGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 694 ~~-------~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.. ++.+++.||.++ .|.+||.
T Consensus 358 ~~~~~~~spd~~~l~s~s~Dg-----~I~iW~~ 385 (388)
T d1erja_ 358 VANGSSLGPEYNVFATGSGDC-----KARIWKY 385 (388)
T ss_dssp ECSSCTTCTTCEEEEEEETTS-----EEEEEEE
T ss_pred EecCcccCCCCCEEEEEeCCC-----EEEEEee
Confidence 11 578888888553 5666664
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.90 E-value=0.76 Score=44.17 Aligned_cols=212 Identities=12% Similarity=0.063 Sum_probs=106.1
Q ss_pred ccceEEEEeCCCCceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~ 552 (748)
.-..+..||....+......+...... ...+.. ++.+++.|+.+ ..+..+|..+++-......... .-.+++
T Consensus 117 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~~~~~~~~~~~-~v~~l~ 190 (337)
T d1gxra_ 117 EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVRQFQGHTD-GASCID 190 (337)
T ss_dssp SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEEEECCCSS-CEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccc-cccccc
Confidence 335688888877665544333222222 222222 55666666643 3578888887764332221111 112222
Q ss_pred E-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 553 A-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 553 ~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
. .++..++.|+.+ ..+..||..+.+--..-..+ ..-.+++.. ++..++.|+.+ ..+..||..+..-
T Consensus 191 ~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~ 258 (337)
T d1gxra_ 191 ISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMES-----SNVEVLHVNKPDK 258 (337)
T ss_dssp ECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETT-----SCEEEEETTSSCE
T ss_pred cccccccccccccc-----ccccccccccceeecccccc--cceEEEEEcccccccceeccc-----ccccccccccccc
Confidence 2 256666777654 46788888776522211111 111223222 55566667654 3578888877664
Q ss_pred EEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeCCCC
Q psy10286 631 TSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGGYDG 707 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~ 707 (748)
.....- ......+.+ +++.++.||.+ +.+.+||..+.+=... ......-.++.. -+++.++.||.++
T Consensus 259 ~~~~~~---~~~i~~v~~s~~g~~l~s~s~D-----g~i~iwd~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~t~s~D~ 328 (337)
T d1gxra_ 259 YQLHLH---ESCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYIVTGSGDK 328 (337)
T ss_dssp EEECCC---SSCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCEEEEEETTS
T ss_pred cccccc---ccccceEEECCCCCEEEEEeCC-----CeEEEEECCCCCEEEE--ccCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 433211 111222222 56677777754 4688898776542221 111111122222 2577778887543
Q ss_pred CCCCCeEEEEeC
Q psy10286 708 VSNLPTVEVYDP 719 (748)
Q Consensus 708 ~~~~~~v~~yd~ 719 (748)
.|.+||.
T Consensus 329 -----~I~vWdl 335 (337)
T d1gxra_ 329 -----KATVYEV 335 (337)
T ss_dssp -----CEEEEEE
T ss_pred -----eEEEEEE
Confidence 4677663
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.85 E-value=0.75 Score=43.10 Aligned_cols=195 Identities=11% Similarity=0.124 Sum_probs=107.3
Q ss_pred EEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEE-ccCC----CCCcceeEEEEE--CCEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK-VSPM----CFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~----~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 574 (748)
++++ -+|.|||.-.. .+.+.+||+..+ +.. .+.. .........+.. .+..++.... ....+.
T Consensus 27 gvavd~dg~i~VaD~~-----n~rI~v~d~~G~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~i~ 96 (279)
T d1q7fa_ 27 GVAVNAQNDIIVADTN-----NHRIQIFDKEGR-FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----PTHQIQ 96 (279)
T ss_dssp EEEECTTCCEEEEEGG-----GTEEEEECTTSC-EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----GGCEEE
T ss_pred EEEEcCCCCEEEEECC-----CCEEEEEeCCCC-EEEEecccCCCcccccccccccccccccccceeccC----Cccccc
Confidence 3444 36789998542 357899998744 322 2211 122233344444 2333333211 124678
Q ss_pred EEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEE
Q psy10286 575 CYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKI 652 (748)
Q Consensus 575 ~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i 652 (748)
.+++....+........ ...+..++ .++.+|+.... ...+.+||+....-..+...........+++- ++.+
T Consensus 97 ~~~~~g~~~~~~~~~~~-~~p~~~avd~~G~i~v~~~~-----~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i 170 (279)
T d1q7fa_ 97 IYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVECK-----VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEI 170 (279)
T ss_dssp EECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEETT-----TTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred cccccccceeecCCCcc-cccceeccccCCcEEEEeec-----cceeeEeccCCceeecccccccccccceeeeccceeE
Confidence 88887777766533221 22223333 36788888654 34688899877655554332222333333333 5789
Q ss_pred EEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 653 YVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 653 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
|+.... ...|++||+..+....++.......-.++++ -+|.|||....++ ..|.+|++...
T Consensus 171 ~v~d~~-----~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~----~~v~~f~~~G~ 232 (279)
T d1q7fa_ 171 FISDNR-----AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNN----FNLTIFTQDGQ 232 (279)
T ss_dssp EEEEGG-----GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSS----CEEEEECTTSC
T ss_pred Eeeecc-----ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCC----cEEEEECCCCC
Confidence 998764 3589999998877777654222222234443 3678999854321 35889987643
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.83 E-value=0.12 Score=49.55 Aligned_cols=263 Identities=14% Similarity=0.052 Sum_probs=129.0
Q ss_pred cceEeecCCCCceee-ccc----ccccceEEeccc-ccccCCCccceEEEEeCCCCceEEccCCCcc----cceeEEEEE
Q psy10286 438 STVEVFDPLVGRWQM-AEE----ETLSNAVISTKS-CLTKAGDSLSTVEVFDPLVGRWQMAEAMSML----RSRVGVAVM 507 (748)
Q Consensus 438 ~~~~~y~~~~~~W~~-~~~----~~~~~~~~~~~~-~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~~~ 507 (748)
+++.+||..+++-.. +.. .......+..++ .++..+.....+..||..+++....-..+.+ ...++++..
T Consensus 11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s 90 (337)
T d1pbyb_ 11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEEC
T ss_pred CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEc
Confidence 467888888776543 221 111233444443 4455555557899999999876543322221 111223332
Q ss_pred --CCEEEEEccCC------CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEe
Q psy10286 508 --KNRLYAFGGYN------GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYE 577 (748)
Q Consensus 508 --~~~iyv~GG~~------~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd 577 (748)
++.+|+.+... .......+..+|..+.+=...-+.+ ...++++.. +| .+|+.++ +...+|
T Consensus 91 ~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~--------~~~~~d 160 (337)
T d1pbyb_ 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP--RQITMLAWARDGSKLYGLGR--------DLHVMD 160 (337)
T ss_dssp TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC--SSCCCEEECTTSSCEEEESS--------SEEEEE
T ss_pred CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc--CCceEEEEcCCCCEEEEEcC--------Ccceee
Confidence 44566554321 1112356778898887643322222 222233333 44 4555432 456678
Q ss_pred CCCCeEEEccCCC-CCC---------cceEEEEECC---EEEEEccCCCC-----cccCeEEEEECCCCcEEEccCCCCC
Q psy10286 578 PDKDQWRIVKSMQ-KHR---------SAGGVIAFDS---YVYALGGHDGL-----SIFDSVERYDPKTDEWTSVKPMLTK 639 (748)
Q Consensus 578 ~~~~~W~~~~~~~-~~r---------~~~~~~~~~~---~iyv~GG~~~~-----~~~~~~~~yd~~~~~W~~~~~~p~~ 639 (748)
+.+.+=...-+.. .++ ..+......+ ..+..++.... .....+..+|..+..+......+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (337)
T d1pbyb_ 161 PEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240 (337)
T ss_dssp TTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS
T ss_pred eecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC
Confidence 7776532221111 000 0000000011 11222222111 1234588889888887766545555
Q ss_pred CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEe
Q psy10286 640 RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYD 718 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd 718 (748)
..........+..+++++ .+.+.+||..+.+....-..+ ..-.+++.. +|+.+.+||.+ .++.+||
T Consensus 241 ~~~~~~~~~~~~~~~~~~------~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s~dG~~l~v~~~~-----~~i~v~D 307 (337)
T d1pbyb_ 241 VFYFSTAVNPAKTRAFGA------YNVLESFDLEKNASIKRVPLP--HSYYSVNVSTDGSTVWLGGAL-----GDLAAYD 307 (337)
T ss_dssp SCEEEEEECTTSSEEEEE------ESEEEEEETTTTEEEEEEECS--SCCCEEEECTTSCEEEEESBS-----SEEEEEE
T ss_pred cceEEEEecccceEEEEc------cccEEEEECCCCcEEEEEcCC--CCEEEEEECCCCCEEEEEeCC-----CcEEEEE
Confidence 554444444433333443 257899999988765543332 222333333 45544456543 4699999
Q ss_pred CCCCc
Q psy10286 719 PSTDS 723 (748)
Q Consensus 719 ~~~~~ 723 (748)
.++.+
T Consensus 308 ~~t~~ 312 (337)
T d1pbyb_ 308 AETLE 312 (337)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 98754
|
| >d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: Tetramerization domain of potassium channels domain: Shaker potassium channel species: California sea hare (Aplysia californica) [TaxId: 6500]
Probab=95.77 E-value=0.0027 Score=50.08 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=59.7
Q ss_pred EEEEECCeEEeeeeeeeecc-CHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKVDDQSFTCHRIVLAAT-IPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~-S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|.|+|+.|...+..|... +.+|.+|+...+.. .....++-+ +=
T Consensus 3 I~LNVGG~~f~t~~~tL~~~p~s~l~~l~~~~~~~---------------------------------~~~~g~~Fi-DR 48 (100)
T d1t1da_ 3 VVINVSGLRFETQLKTLNQFPDTLLGNPQKRNRYY---------------------------------DPLRNEYFF-DR 48 (100)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTCHHHHGGGE---------------------------------ETTTTEEEE-CS
T ss_pred EEEEECCEEEEEeHHHHhhCCCchhHHHHhCCCcC---------------------------------CCCCCeEEE-ec
Confidence 78999999999999999764 45666666543211 111223333 45
Q ss_pred CHHHHHHHHHhhhc-eeEEeech-hHHHHHHHHHHhcchhH
Q psy10286 156 DAVAMEALINFVYS-GRVTIHSQ-NVQSLMVVASFLQMQKV 194 (748)
Q Consensus 156 ~~~~~~~~l~flYt-g~~~i~~~-~v~~ll~~A~~l~i~~l 194 (748)
+|..|+.+|+|+-| |.+..+.+ .+..+++-|++|+|+++
T Consensus 49 dp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea~y~gi~~~ 89 (100)
T d1t1da_ 49 NRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGEN 89 (100)
T ss_dssp CSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHHHHcCCCHH
Confidence 89999999999998 45555444 47889999999999873
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.38 Score=45.01 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++...+.++.+ ..+..||..+.+....-... .....++.. ++.+++.|+.++ .+..||..+.....
T Consensus 112 ~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~~~ 179 (317)
T d1vyhc1 112 NGDHIVSASRD-----KTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASCSNDQ-----TVRVWVVATKECKA 179 (317)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEE
T ss_pred CCceEEeeccC-----cceeEeecccceeeeEEccC--CCcceeeecccCCCEEEEEeCCC-----eEEEEeeccceeeE
Confidence 44555556543 35778888877654322111 111222222 566777776542 45566665554322
Q ss_pred cc-----------CCCCC---------CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcce-e
Q psy10286 586 VK-----------SMQKH---------RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRL-G 644 (748)
Q Consensus 586 ~~-----------~~~~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~ 644 (748)
.- -.|.. ..........+.+++.|+.+ ..+..||..+.+.... +....... +
T Consensus 180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~~--~~~~~~~v~~ 252 (317)
T d1vyhc1 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCLMT--LVGHDNWVRG 252 (317)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEE
T ss_pred EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC-----CEEEEEECCCCcEEEE--EeCCCCCEEE
Confidence 10 00000 00011112234555556553 3578888887764322 11111111 2
Q ss_pred EEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEe
Q psy10286 645 VAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYD 718 (748)
Q Consensus 645 ~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd 718 (748)
++. -++++++.||.+ ..|.+||..+.+ .+..+........++.. ++++++.||.++ .|.+||
T Consensus 253 ~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg-----~i~iWd 317 (317)
T d1vyhc1 253 VLFHSGGKFILSCADD-----KTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-----TVKVWE 317 (317)
T ss_dssp EEECSSSSCEEEEETT-----TEEEEECCTTSC--CCEEEECCSSCEEEEEECSSSSCEEEEETTS-----EEEEEC
T ss_pred EEECCCCCEEEEEECC-----CeEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEeC
Confidence 222 256777777754 368889987653 22222111222222333 567777787553 466554
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.58 E-value=1.1 Score=42.98 Aligned_cols=191 Identities=8% Similarity=0.008 Sum_probs=103.8
Q ss_pred CccceEEEEeCCCCceEEc-cCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc-CCCCCcceeE
Q psy10286 474 DSLSTVEVFDPLVGRWQMA-EAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS-PMCFKRSAVG 550 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~ 550 (748)
.....++++||.++..... .+.. ..-++++.. +|++||.... +......+..+++.+....... .......-..
T Consensus 58 ~~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd 134 (319)
T d2dg1a1 58 VFEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLG-DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 134 (319)
T ss_dssp TTTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECT-TSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecC-CCccceeEEEEcCCCceeeeeccCCCcccCCcc
Confidence 3446789999988765433 2221 122444444 7789987421 1123456888888887655443 2222222223
Q ss_pred EEE-ECCEEEEEeCCC-CCCCCceEEEEeCCCCeEEEcc-CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEEC
Q psy10286 551 AAA-LNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVK-SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDP 625 (748)
Q Consensus 551 ~~~-~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~ 625 (748)
.++ -+|.+|+-.-.. .......++++++....++.+. .+..| .+++.- ++.+|+.--. .+.+++||.
T Consensus 135 ~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg~~lyvad~~-----~~~I~~~d~ 206 (319)
T d2dg1a1 135 MVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDEKVLWVTETT-----ANRLHRIAL 206 (319)
T ss_dssp EEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTSSEEEEEEGG-----GTEEEEEEE
T ss_pred eeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeeccccceEEEeccc-----CCceEEEEE
Confidence 333 378888754322 1224567899999887776553 33322 233332 4478887543 457899986
Q ss_pred CCCc---EE---Ecc-CCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 626 KTDE---WT---SVK-PMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 626 ~~~~---W~---~~~-~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
..+. +. ... .......-.++++- +|.|||..-. ...|.+||++-..-..+
T Consensus 207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 207 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE
T ss_pred cCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----CCEEEEECCCCcEEEEE
Confidence 5431 11 111 11111122344443 6789987532 25899999876544444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=95.53 E-value=0.65 Score=44.56 Aligned_cols=217 Identities=12% Similarity=0.053 Sum_probs=112.4
Q ss_pred ceEEEEeCCCCceEEccCCCcc---cceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCc---ce
Q psy10286 477 STVEVFDPLVGRWQMAEAMSML---RSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKR---SA 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~---r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r---~~ 548 (748)
..++++|+.++.+......... -.-++++.. ++.+|+..+. +.+.++|+.............++ .-
T Consensus 46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------~~i~~~~~~g~~~~~~~~~~~g~~~~~p 119 (314)
T d1pjxa_ 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTDGTFEEIAKKDSEGRRMQGC 119 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETTSCEEECCSBCTTSCBCBCC
T ss_pred CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------CeEEEEeCCCcEEEEEeccccccccCCC
Confidence 4689999999887665432211 112334443 4568886542 35889999887655443322222 11
Q ss_pred eEEEE-ECCEEEEEe--CCC--------CCCCCceEEEEeCCCCeEEEc-cCCCCCCcceEEEE-EC-C----EEEEEcc
Q psy10286 549 VGAAA-LNDKLYVCG--GYD--------GVSSLNTVECYEPDKDQWRIV-KSMQKHRSAGGVIA-FD-S----YVYALGG 610 (748)
Q Consensus 549 ~~~~~-~~~~iyv~G--G~~--------~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~~~~-~~-~----~iyv~GG 610 (748)
...++ -+|.+|+.. |.. .......++++++... +..+ ..+..| .+.+. -+ + .+|+...
T Consensus 120 ndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~-~~~~~~~~~~p---NGi~~~~d~d~~~~~lyv~d~ 195 (314)
T d1pjxa_ 120 NDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ-MIQVDTAFQFP---NGIAVRHMNDGRPYQLIVAET 195 (314)
T ss_dssp CEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC-EEEEEEEESSE---EEEEEEECTTSCEEEEEEEET
T ss_pred cEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCc-eeEeeCCccee---eeeEECCCCCcceeEEEEEee
Confidence 23333 378999863 211 1123457889988653 4443 233322 12222 22 2 5777643
Q ss_pred CCCCcccCeEEEEECCCCc---EEEc-cCCCCCCc--ceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCC
Q psy10286 611 HDGLSIFDSVERYDPKTDE---WTSV-KPMLTKRC--RLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM 683 (748)
Q Consensus 611 ~~~~~~~~~~~~yd~~~~~---W~~~-~~~p~~r~--~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 683 (748)
. ...+++||...+. +.++ ..++.... --++++ -+|.|||..-. .+.|++||++.......-.+
T Consensus 196 ~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g~I~~~dp~~g~~~~~i~~ 265 (314)
T d1pjxa_ 196 P-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SSHIEVFGPDGGQPKMRIRC 265 (314)
T ss_dssp T-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TTEEEEECTTCBSCSEEEEC
T ss_pred c-----ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----CCEEEEEeCCCCEEEEEEEC
Confidence 3 3578898865432 2111 12222111 123433 26789987421 25899999987653322123
Q ss_pred CCCCcceEEEEEC---CEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 684 NVMRSRVALVANM---GKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 684 p~~r~~~~~~~~~---~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
|.++ .+.+.++ ++|||.... ...++.++..
T Consensus 266 p~~~--~t~~afg~d~~~lyVt~~~-----~g~i~~~~~~ 298 (314)
T d1pjxa_ 266 PFEK--PSNLHFKPQTKTIFVTEHE-----NNAVWKFEWQ 298 (314)
T ss_dssp SSSC--EEEEEECTTSSEEEEEETT-----TTEEEEEECS
T ss_pred CCCC--EEEEEEeCCCCEEEEEECC-----CCcEEEEECC
Confidence 3322 2233332 368887542 2468888753
|
| >d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Collagenase (MMP1), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.29 Score=43.32 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=83.4
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEE--c----cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRI--V----KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~--~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
+++..+|.+|+|-|. ..|+.+........ + +.+|.+. -++... ++++|+|-|. ..|
T Consensus 16 Av~~~~G~~y~Fkg~-------~~wr~~~~~~~~~p~~i~~~w~glp~~I--DAAf~~~~~~~~yfFkG~-------~y~ 79 (195)
T d1su3a2 16 AITTIRGEVMFFKDR-------FYMRTNPFYPEVELNFISVFWPQLPNGL--EAAYEFADRDEVRFFKGN-------KYW 79 (195)
T ss_dssp EEEEETTEEEEEETT-------EEEECCTTSSSCEEEEGGGTCTTSCSSC--CEEEEEGGGTEEEEEETT-------EEE
T ss_pred EEEEcCCeEEEEeCC-------EEEEeeCCCCccCccchHhhCcCCCCcc--cceEEecCCcEEEEECCc-------EEE
Confidence 566679999999873 44555544433321 1 2333322 233333 6899999884 789
Q ss_pred EEECCCCcE---EEcc---CCCCCCcceeEE-EE--CCEEEEEeccCCCccccEEEEEeCCCCcEE-----Ec----cCC
Q psy10286 622 RYDPKTDEW---TSVK---PMLTKRCRLGVA-AL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWK-----MI----ASM 683 (748)
Q Consensus 622 ~yd~~~~~W---~~~~---~~p~~r~~~~~~-~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~ 683 (748)
+|+..+..+ ..+. .+|......-++ .. ++++|++-| +..|+||..+++-. .+ +.+
T Consensus 80 ~y~~~~~~~g~p~~i~~~~G~p~~~~~idaa~~~~~~~~~Y~FkG-------~~y~ry~~~~~~vd~gyPk~I~~~w~Gv 152 (195)
T d1su3a2 80 AVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA-------NKYWRYDEYKRSMDPGYPKMIAHDFPGI 152 (195)
T ss_dssp EEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCSEEHHHHSTTS
T ss_pred EEcCCccccCCCccchhhcCCCCCccccccccccCCCCeEEEEeC-------CEEEEEeccCccccCCcccccccccCCC
Confidence 998432111 1111 123222222233 33 579999988 68899998876421 11 122
Q ss_pred CCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 684 NVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 684 p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
|.. --++...+|++|+|-| +..+.||+.+.+-..
T Consensus 153 p~~--iDAAf~~~g~~YfFkg-------~~y~r~~~~~~~v~~ 186 (195)
T d1su3a2 153 GHK--VDAVFMKDGFFYFFHG-------TRQYKFDPKTKRILT 186 (195)
T ss_dssp CSC--CSEEEEETTEEEEEET-------TEEEEEETTTTEEEE
T ss_pred CCC--ccEEEEECCeEEEEEC-------CEEEEEeCCcCEEEe
Confidence 322 2244456999999987 468999987765433
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.53 E-value=0.63 Score=43.60 Aligned_cols=145 Identities=13% Similarity=0.117 Sum_probs=79.2
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+++.++.|+.+ ..+..||..+.+............-.+++.. ++..++.|+.++ .+..||..++.....
T Consensus 147 ~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 147 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR-----KVIPYSVANNFELAH 216 (299)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----CEEEEEGGGTTEESC
T ss_pred ccccccccccc-----cccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccc
Confidence 66777888754 4688899888776554333222222233322 455666666543 588999887765432
Q ss_pred -cCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-CCCCCCcc-eEEEEECCEEEEEeCCCCC
Q psy10286 634 -KPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-SMNVMRSR-VALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 634 -~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~-~~~~~~~~~l~v~GG~~~~ 708 (748)
..+.........+.+ ++..++.||.+ ..+.+||..+.....+- ........ ..++..++..++.||.++
T Consensus 217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~- 290 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSPDNVRLATGSLD-----NSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS- 290 (299)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTS-
T ss_pred cccccccccccccccccccccceEEEcCC-----CEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeCCC-
Confidence 222222222223333 67788888865 35888998775543221 11111222 223334566667777543
Q ss_pred CCCCeEEEEeC
Q psy10286 709 SNLPTVEVYDP 719 (748)
Q Consensus 709 ~~~~~v~~yd~ 719 (748)
.|.+||.
T Consensus 291 ----~i~iWdl 297 (299)
T d1nr0a2 291 ----NIKFWNV 297 (299)
T ss_dssp ----CEEEEEC
T ss_pred ----EEEEEec
Confidence 4777765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=1.1 Score=42.55 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=130.6
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCceeec-cc--ccccceEEecccccccCCCccceEEEEeCCCCceEEccCCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMA-EE--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS 496 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~-~~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~ 496 (748)
.++.+++.||.+ .++.+||..+++-... .. ..+....+..++.+.. |..-..+..++....+-.......
T Consensus 21 ~~~~~l~tgs~D------g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s-~s~D~~i~iw~~~~~~~~~~~~~~ 93 (355)
T d1nexb2 21 FEDNYVITGADD------KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS-GSTDRTVRVWDIKKGCCTHVFEGH 93 (355)
T ss_dssp EETTEEEEEETT------TEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEE-EETTCCEEEEETTTTEEEEEECCC
T ss_pred ECCCEEEEEeCC------CeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEE-Eecccccccccccccccccccccc
Confidence 345566677653 2588888877654321 11 1111112233333222 222345677777766544332222
Q ss_pred cc-cceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEc------------cCCCCC---------cceeEEEE
Q psy10286 497 ML-RSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV------------SPMCFK---------RSAVGAAA 553 (748)
Q Consensus 497 ~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~------------~~~~~~---------r~~~~~~~ 553 (748)
.. ......+.. ++...+.|+.+ ..+..||..+..-... .+.... ........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 168 (355)
T d1nexb2 94 NSTVRCLDIVEYKNIKYIVTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168 (355)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETT-----SEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE
T ss_pred cccccccccccccccceeeeecCC-----CcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc
Confidence 22 222222233 44556666643 3566777665432110 000000 00111222
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
.++.+.+.|+.+ ..+..||..+.+...................++..++.|+.++ .+..||..+......
T Consensus 169 ~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~d~~~~~~~~~ 238 (355)
T d1nexb2 169 GHGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT-----TIRIWDLENGELMYT 238 (355)
T ss_dssp EETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTS-----CEEEEETTTCCEEEE
T ss_pred cccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeecccccc-----eEEeeeccccccccc
Confidence 244555555543 3577888887765444332222222222233555666666543 578888887654332
Q ss_pred cCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCe
Q psy10286 634 KPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPT 713 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~ 713 (748)
- ........++..+++.++.|+.+ ..|.+||..+..-..... ........+...++++++.|+ + ..
T Consensus 239 ~--~~h~~~v~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~-d-----~~ 304 (355)
T d1nexb2 239 L--QGHTALVGLLRLSDKFLVSAAAD-----GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-E-----NQ 304 (355)
T ss_dssp E--CCCSSCCCEEEECSSEEEEECTT-----SEEEEEETTTCCEEEEEE-CTTCCCCCEEEECSSEEEEEE-T-----TE
T ss_pred c--ccccccccccccccceeeeeecc-----cccccccccccceecccc-cCCceEEEEEcCCCCEEEEEe-C-----CE
Confidence 1 11122234455677777888765 368889987765322211 112222334455777666553 2 36
Q ss_pred EEEEeCCCCce
Q psy10286 714 VEVYDPSTDSW 724 (748)
Q Consensus 714 v~~yd~~~~~W 724 (748)
+.+||.++++.
T Consensus 305 i~vwd~~tg~~ 315 (355)
T d1nexb2 305 FNIYNLRSGKL 315 (355)
T ss_dssp EEEEETTTCCB
T ss_pred EEEEECCCCCE
Confidence 99999988764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.64 Score=44.27 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=96.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEcc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK 587 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 587 (748)
++.+.+.|+.+ ..+..||..+.+...................++..++.|+.+ ..+..||..+......
T Consensus 170 ~~~~~~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~- 238 (355)
T d1nexb2 170 HGNIVVSGSYD-----NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGELMYT- 238 (355)
T ss_dssp ETTEEEEEETT-----SCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTCCEEEE-
T ss_pred ccceeeeeccc-----ceeeeeecccccceeeeeccccccccccccccceeeeccccc-----ceEEeeeccccccccc-
Confidence 44555555533 357888988876554433232222222333355666666654 3577888877654332
Q ss_pred CCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEE
Q psy10286 588 SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 588 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 667 (748)
+......-.++..++..++.|+.++ .+..||..+..-.... -........+...++++++.|+ + +.+
T Consensus 239 -~~~h~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~-d-----~~i 305 (355)
T d1nexb2 239 -LQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDANDYSRKFSY-HHTNLSAITTFYVSDNILVSGS-E-----NQF 305 (355)
T ss_dssp -ECCCSSCCCEEEECSSEEEEECTTS-----EEEEEETTTCCEEEEE-ECTTCCCCCEEEECSSEEEEEE-T-----TEE
T ss_pred -cccccccccccccccceeeeeeccc-----ccccccccccceeccc-ccCCceEEEEEcCCCCEEEEEe-C-----CEE
Confidence 1111122234455666777777653 5788888766532211 1112222334455777666553 2 478
Q ss_pred EEEeCCCCcEEEccCCCCCCcc-eEEEEECCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 668 EMYDPITDEWKMIASMNVMRSR-VALVANMGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 668 ~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.+||.++++.... .+...... .+++..++.+++.|+.++.. -++++|.
T Consensus 306 ~vwd~~tg~~~~~-~~~~~~~~V~~v~~~~~~~~~~~s~dg~~---~l~~~df 354 (355)
T d1nexb2 306 NIYNLRSGKLVHA-NILKDADQIWSVNFKGKTLVAAVEKDGQS---FLEILDF 354 (355)
T ss_dssp EEEETTTCCBCCS-CTTTTCSEEEEEEEETTEEEEEEESSSCE---EEEEEEC
T ss_pred EEEECCCCCEEEE-EecCCCCCEEEEEEcCCeEEEEEECCCcE---EEEEEeC
Confidence 9999988653211 11111222 23344567766666655431 3677764
|
| >d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase B (MMP-9) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.29 Score=43.35 Aligned_cols=142 Identities=8% Similarity=0.092 Sum_probs=81.4
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEE----Ec----cCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWR----IV----KSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~----~~----~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 620 (748)
+++..+|.+|+|-| ...|+|+....... .+ +.+|.. -.++... .++++|+|-|. .+
T Consensus 11 Av~~~~G~~y~Fkg-------~~ywr~~~~~~~~~~~P~~I~~~w~glp~~-IDAAf~~~~~~k~yfFkg~-------~~ 75 (195)
T d1itva_ 11 AIAEIGNQLYLFKD-------GKYWRFSEGRGSRPQGPFLIADKWPALPRK-LDSVFEEPLSKKLFFFSGR-------QV 75 (195)
T ss_dssp EEEEETTEEEEEET-------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS-CSEEEECTTTCCEEEEETT-------EE
T ss_pred eEEEeCCEEEEEEC-------CEEEEEeCCCCCcCCCcEEeeeecCCCCCC-ccEEEEECCCCEEEEEecC-------EE
Confidence 45677999999987 46777765433321 11 234322 1122112 26799999774 68
Q ss_pred EEEECCCCcE-EEccC--CCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----c----cCCCCC
Q psy10286 621 ERYDPKTDEW-TSVKP--MLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----I----ASMNVM 686 (748)
Q Consensus 621 ~~yd~~~~~W-~~~~~--~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~ 686 (748)
|+|+-.+-.. ..+.. +|..-....++.. ++++|++=| +..|+||..+++-.. + +.+|.
T Consensus 76 ~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG-------~~y~ryd~~~~~v~~gyPk~i~~~w~gvp~- 147 (195)
T d1itva_ 76 WVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG-------RRLWRFDVKAQMVDPRSASEVDRMFPGVPL- 147 (195)
T ss_dssp EEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET-------TEEEEEETTTTEECGGGCEEHHHHSTTSCS-
T ss_pred EEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec-------cEEEEEeCCcccccCCCccchhhhcCCCCC-
Confidence 8887432211 12332 2322222233333 689999977 588999988764221 1 12332
Q ss_pred CcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 687 RSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 687 r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
.-.++...++++|+|-| ..-+.||..+.
T Consensus 148 -~idaAf~~~~~~Yffkg-------~~y~r~~~~~~ 175 (195)
T d1itva_ 148 -DTHDVFQFREKAYFCQD-------RFYWRVSSRSE 175 (195)
T ss_dssp -SCSEEEEETTEEEEEET-------TEEEEEECCTT
T ss_pred -CCcEEEEeCCcEEEEEC-------CEEEEEcCCce
Confidence 23445567899999977 35788887654
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.37 E-value=0.97 Score=43.33 Aligned_cols=185 Identities=14% Similarity=0.095 Sum_probs=96.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcce-eEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSA-VGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++..++.|+.+ ..+..||....+......+...... ...+.. ++.+++.|+.+ ..+..||..+++-..
T Consensus 108 dg~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 108 DGCTLIVGGEA-----STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQTLVR 177 (337)
T ss_dssp TSSEEEEEESS-----SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred CCCEEEEeecc-----cccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccc
Confidence 66677778754 4688899887765544333222222 222222 56666666643 357888888776433
Q ss_pred ccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCcc
Q psy10286 586 VKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIF 663 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~ 663 (748)
....... .-.+++. .++..++.|+.+ ..+..||..+.+-...-. ....-.+++.. ++..+++|+.+
T Consensus 178 ~~~~~~~-~v~~l~~s~~~~~~~~~~~d-----~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d---- 245 (337)
T d1gxra_ 178 QFQGHTD-GASCIDISNDGTKLWTGGLD-----NTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMES---- 245 (337)
T ss_dssp EECCCSS-CEEEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETT----
T ss_pred ccccccc-cccccccccccccccccccc-----ccccccccccceeecccc--cccceEEEEEcccccccceeccc----
Confidence 3221111 1112222 255666677664 368888987765322211 11111222222 55666777654
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEE--ECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVA--NMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..+.+||..+..-....... .....+. -+++.++.||.+ ..+.+||..++.
T Consensus 246 -~~i~i~d~~~~~~~~~~~~~---~~i~~v~~s~~g~~l~s~s~D-----g~i~iwd~~~~~ 298 (337)
T d1gxra_ 246 -SNVEVLHVNKPDKYQLHLHE---SCVLSLKFAYCGKWFVSTGKD-----NLLNAWRTPYGA 298 (337)
T ss_dssp -SCEEEEETTSSCEEEECCCS---SCEEEEEECTTSSEEEEEETT-----SEEEEEETTTCC
T ss_pred -cccccccccccccccccccc---cccceEEECCCCCEEEEEeCC-----CeEEEEECCCCC
Confidence 35788888776544332111 1122222 266777777754 357888876653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.33 E-value=1.2 Score=42.08 Aligned_cols=185 Identities=10% Similarity=0.056 Sum_probs=97.6
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC----CcceEEE
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH----RSAGGVI 599 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r~~~~~~ 599 (748)
..++++|+.+++-+.. .+|.. -...+..-+|.+++... +.+..||+.+++++.+...... |.....+
T Consensus 40 ~~I~r~d~~~g~~~~~-~~~~~-~~~i~~~~dg~l~va~~-------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v 110 (295)
T d2ghsa1 40 RELHELHLASGRKTVH-ALPFM-GSALAKISDSKQLIASD-------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRM 110 (295)
T ss_dssp TEEEEEETTTTEEEEE-ECSSC-EEEEEEEETTEEEEEET-------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEE
T ss_pred CEEEEEECCCCeEEEE-ECCCC-cEEEEEecCCCEEEEEe-------CccEEeecccceeeEEeeeecCCCcccceeeEE
Confidence 4689999999875443 22322 12222234778877542 4689999999999887654332 3333333
Q ss_pred EECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCC--
Q psy10286 600 AFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITD-- 675 (748)
Q Consensus 600 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~-- 675 (748)
--+|.+|+-...... .......|....++.+.+..- . ....+.+.. ++.+|+..-. .+.|+.|+....
T Consensus 111 d~~G~iw~~~~~~~~-~~~~g~l~~~~~g~~~~~~~~-~-~~~Ng~~~s~d~~~l~~~dt~-----~~~I~~~~~d~~~~ 182 (295)
T d2ghsa1 111 HPSGALWIGTMGRKA-ETGAGSIYHVAKGKVTKLFAD-I-SIPNSICFSPDGTTGYFVDTK-----VNRLMRVPLDARTG 182 (295)
T ss_dssp CTTSCEEEEEEETTC-CTTCEEEEEEETTEEEEEEEE-E-SSEEEEEECTTSCEEEEEETT-----TCEEEEEEBCTTTC
T ss_pred CCCCCEEEEeccccc-cccceeEeeecCCcEEEEeec-c-CCcceeeecCCCceEEEeecc-----cceeeEeeeccccc
Confidence 347788775432211 122333444445555554311 1 111222222 3457776532 357888875322
Q ss_pred ----cEEEccCCCCCCcc-eEEEE-ECCEEEEE--eCCCCCCCCCeEEEEeCCCCceEecCCCCCC
Q psy10286 676 ----EWKMIASMNVMRSR-VALVA-NMGKLWAI--GGYDGVSNLPTVEVYDPSTDSWAFVAPMCAH 733 (748)
Q Consensus 676 ----~W~~~~~~p~~r~~-~~~~~-~~~~l~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 733 (748)
........+..... .++++ -+|.|||. +| ..|.+|||.......+ ++|..
T Consensus 183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-------g~V~~~dp~G~~~~~i-~lP~~ 240 (295)
T d2ghsa1 183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-------GAVDRYDTDGNHIARY-EVPGK 240 (295)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-------TEEEEECTTCCEEEEE-ECSCS
T ss_pred ccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-------CceEEecCCCcEeeEe-cCCCC
Confidence 11111122222222 23333 36789986 33 2699999988777666 45543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=1.5 Score=41.04 Aligned_cols=217 Identities=17% Similarity=0.215 Sum_probs=112.3
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCE
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDK 557 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~ 557 (748)
.+..++..+++........ .............++.|+.+ ..+..+|+...+-... +............++.
T Consensus 118 ~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d-----~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~ 188 (342)
T d2ovrb2 118 TLRVWDIETGQCLHVLMGH--VAAVRCVQYDGRRVVSGAYD-----FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGI 188 (342)
T ss_dssp EEEEEESSSCCEEEEEECC--SSCEEEEEECSSCEEEEETT-----SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSS
T ss_pred eEEEeecccccceeeeecc--cccceeeccccceeeeecCC-----CeEEEeecccceeeEE--EcCcccccccccCCCC
Confidence 4566666666543332111 11222333445555666543 3466777766543221 1111122334445777
Q ss_pred EEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc-cCC
Q psy10286 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-KPM 636 (748)
Q Consensus 558 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~ 636 (748)
.++.|+.+ ..+..||..+.+-..... .....-.+...++.+++.|+.++ .+..||....+-... ...
T Consensus 189 ~l~s~~~d-----g~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~ 256 (342)
T d2ovrb2 189 HVVSGSLD-----TSIRVWDVETGNCIHTLT--GHQSLTSGMELKDNILVSGNADS-----TVKIWDIKTGQCLQTLQGP 256 (342)
T ss_dssp EEEEEETT-----SCEEEEETTTCCEEEEEC--CCCSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCEEEEECST
T ss_pred EEEEEeCC-----CeEEEeecccceeeeEec--ccccceeEEecCCCEEEEEcCCC-----EEEEEeccccccccccccc
Confidence 77778765 357888887765332211 11112223334455666676643 588899877654433 222
Q ss_pred CCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEE-ccCCCCC--Ccce-EEEEE-CCEEEEEeCCCCCCCC
Q psy10286 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-IASMNVM--RSRV-ALVAN-MGKLWAIGGYDGVSNL 711 (748)
Q Consensus 637 p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-~~~~p~~--r~~~-~~~~~-~~~l~v~GG~~~~~~~ 711 (748)
........+...++.+++.||.+ ..|.+||..+.+-.. +.....+ .... ++... ++.+++.|+.++.. .
T Consensus 257 ~~~~~~~~~~~~~~~~~~s~s~D-----g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~-~ 330 (342)
T d2ovrb2 257 NKHQSAVTCLQFNKNFVITSSDD-----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE-E 330 (342)
T ss_dssp TSCSSCEEEEEECSSEEEEEETT-----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSS-C
T ss_pred ceeeeceeecccCCCeeEEEcCC-----CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCC-e
Confidence 23333444555677778888764 378999998876532 3222211 1111 22223 45566677665532 3
Q ss_pred CeEEEEeCCC
Q psy10286 712 PTVEVYDPST 721 (748)
Q Consensus 712 ~~v~~yd~~~ 721 (748)
..++++|...
T Consensus 331 ~~l~~~Df~~ 340 (342)
T d2ovrb2 331 TKLLVLDFDV 340 (342)
T ss_dssp CEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 4578887654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.83 E-value=1.2 Score=42.04 Aligned_cols=105 Identities=18% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE
Q psy10286 602 DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679 (748)
Q Consensus 602 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (748)
.+.+++.|+.+ ..+..||..+.+-... +........++.+ ++..++.|+.+ ..+..||........
T Consensus 195 ~~~~~~~~~~d-----~~v~i~d~~~~~~~~~--~~~h~~~i~~v~~~p~~~~l~s~s~d-----~~i~~~~~~~~~~~~ 262 (340)
T d1tbga_ 195 DTRLFVSGACD-----ASAKLWDVREGMCRQT--FTGHESDINAICFFPNGNAFATGSDD-----ATCRLFDLRADQELM 262 (340)
T ss_dssp TSSEEEEEETT-----TEEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTEEEE
T ss_pred ccceeEEeecC-----ceEEEEECCCCcEEEE--EeCCCCCeEEEEECCCCCEEEEEeCC-----CeEEEEeeccccccc
Confidence 45566666653 3578888877653221 1111122222333 56677777754 357788888776544
Q ss_pred ccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 680 IASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 680 ~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.-...........+.+ ++++++.|+.++ .|.+||..+++
T Consensus 263 ~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg-----~i~iwd~~~~~ 303 (340)
T d1tbga_ 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDF-----NCNVWDALKAD 303 (340)
T ss_dssp EECCTTCCSCEEEEEECSSSCEEEEEETTS-----CEEEEETTTCC
T ss_pred ccccccccCceEEEEECCCCCEEEEEECCC-----EEEEEECCCCc
Confidence 3222222222333333 577778887543 58999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=94.73 E-value=1.4 Score=42.11 Aligned_cols=199 Identities=11% Similarity=0.062 Sum_probs=105.5
Q ss_pred CCEEEEEccCC--CCCCCCeEEEEECCCCeEEEccCCCC---CcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 508 KNRLYAFGGYN--GSERLSTVEEFDPVRRVWNKVSPMCF---KRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 508 ~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~---~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
+|.+|+..... .......+++||+.++.+........ .-..++++.. ++.+|+..+. +.+.++|+..
T Consensus 28 dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~------~~i~~~~~~g 101 (314)
T d1pjxa_ 28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------LGLLVVQTDG 101 (314)
T ss_dssp TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------TEEEEEETTS
T ss_pred CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC------CeEEEEeCCC
Confidence 67888875432 12234579999999998876543211 1112344444 3467877552 4588999988
Q ss_pred CeEEEccCCCCCCc----ceEEEEECCEEEEEccCC----------CCcccCeEEEEECCCCcEEEcc-CCCCCCcceeE
Q psy10286 581 DQWRIVKSMQKHRS----AGGVIAFDSYVYALGGHD----------GLSIFDSVERYDPKTDEWTSVK-PMLTKRCRLGV 645 (748)
Q Consensus 581 ~~W~~~~~~~~~r~----~~~~~~~~~~iyv~GG~~----------~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~ 645 (748)
............+. .-.++--+|.+|+..-.. .......++++++.. ++..+. .+..+ .+.
T Consensus 102 ~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~~~~~~~~p---NGi 177 (314)
T d1pjxa_ 102 TFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFP---NGI 177 (314)
T ss_dssp CEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEEEEEEESSE---EEE
T ss_pred cEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeEeeCCccee---eee
Confidence 76655443322221 112233368999863210 011234688998854 454442 22221 122
Q ss_pred EE-EC-C----EEEEEeccCCCccccEEEEEeCCCCc---EEE-ccCCCCCCc-c-eEEEE-ECCEEEEEeCCCCCCCCC
Q psy10286 646 AA-LN-N----KIYVCGGYDGAIFLQSVEMYDPITDE---WKM-IASMNVMRS-R-VALVA-NMGKLWAIGGYDGVSNLP 712 (748)
Q Consensus 646 ~~-~~-~----~i~v~GG~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r~-~-~~~~~-~~~~l~v~GG~~~~~~~~ 712 (748)
+. -+ + .+|+.... ...|++||...+. +.. ...++.... . -++++ -+|.|||..-. ..
T Consensus 178 ~~~~d~d~~~~~lyv~d~~-----~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----~g 247 (314)
T d1pjxa_ 178 AVRHMNDGRPYQLIVAETP-----TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----SS 247 (314)
T ss_dssp EEEECTTSCEEEEEEEETT-----TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----TT
T ss_pred EECCCCCcceeEEEEEeec-----ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----CC
Confidence 22 22 2 57776532 3678888754332 222 222332221 1 23333 36889987421 14
Q ss_pred eEEEEeCCCCceEe
Q psy10286 713 TVEVYDPSTDSWAF 726 (748)
Q Consensus 713 ~v~~yd~~~~~W~~ 726 (748)
.|.+|||+++....
T Consensus 248 ~I~~~dp~~g~~~~ 261 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKM 261 (314)
T ss_dssp EEEEECTTCBSCSE
T ss_pred EEEEEeCCCCEEEE
Confidence 79999999876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=94.63 E-value=1.2 Score=42.54 Aligned_cols=203 Identities=10% Similarity=0.039 Sum_probs=110.0
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEc-cCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV-SPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~-~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
+|.||+..- ....++++||.++..... .+.. ..-++++.. +|++|+....+ ......+..+++.+.....
T Consensus 50 ~G~Ly~~D~-----~~g~I~ri~p~g~~~~~~~~~~~--~~p~gla~~~dG~l~va~~~~-~~~~~~i~~~~~~~~~~~~ 121 (319)
T d2dg1a1 50 QGQLFLLDV-----FEGNIFKINPETKEIKRPFVSHK--ANPAAIKIHKDGRLFVCYLGD-FKSTGGIFAATENGDNLQD 121 (319)
T ss_dssp TSCEEEEET-----TTCEEEEECTTTCCEEEEEECSS--SSEEEEEECTTSCEEEEECTT-SSSCCEEEEECTTSCSCEE
T ss_pred CCCEEEEEC-----CCCEEEEEECCCCeEEEEEeCCC--CCeeEEEECCCCCEEEEecCC-CccceeEEEEcCCCceeee
Confidence 567888742 235799999998764443 2222 123455544 78999874321 1234568888888877554
Q ss_pred ccC-CCC-CCcceEEEEECCEEEEEccCC-CCcccCeEEEEECCCCcEEEcc-CCCCCCcceeEEEE--CCEEEEEeccC
Q psy10286 586 VKS-MQK-HRSAGGVIAFDSYVYALGGHD-GLSIFDSVERYDPKTDEWTSVK-PMLTKRCRLGVAAL--NNKIYVCGGYD 659 (748)
Q Consensus 586 ~~~-~~~-~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~i~v~GG~~ 659 (748)
... ... .+..-.++.-+|.+|+-.-.. .......++++++....++.+. .+..+ .+.+.- ++.+|+.--.
T Consensus 122 ~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~p---nGia~s~dg~~lyvad~~- 197 (319)
T d2dg1a1 122 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVA---NGIALSTDEKVLWVTETT- 197 (319)
T ss_dssp EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSE---EEEEECTTSSEEEEEEGG-
T ss_pred eccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecccee---eeeeeccccceEEEeccc-
Confidence 432 222 222223333477888764321 1123456999999888776653 22221 233332 3468887532
Q ss_pred CCccccEEEEEeCCCCc---EE---EccC-CCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCC
Q psy10286 660 GAIFLQSVEMYDPITDE---WK---MIAS-MNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMC 731 (748)
Q Consensus 660 ~~~~~~~v~~yd~~~~~---W~---~~~~-~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 731 (748)
.+.|++||...+. +. .... ......--++++ -+|.|||..-. ...|.+|||+...-..+ .+|
T Consensus 198 ----~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----~g~V~~~~p~G~~l~~i-~~P 267 (319)
T d2dg1a1 198 ----ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----QGRVLVFNKRGYPIGQI-LIP 267 (319)
T ss_dssp ----GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----TTEEEEECTTSCEEEEE-ECT
T ss_pred ----CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----CCEEEEECCCCcEEEEE-eCC
Confidence 4678999865431 11 1111 111111123443 36889997421 14799999976555444 344
Q ss_pred C
Q psy10286 732 A 732 (748)
Q Consensus 732 ~ 732 (748)
.
T Consensus 268 ~ 268 (319)
T d2dg1a1 268 G 268 (319)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=94.62 E-value=1.1 Score=41.89 Aligned_cols=109 Identities=23% Similarity=0.185 Sum_probs=63.5
Q ss_pred CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 602 DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 602 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
++..++.|+.+ ..+..||..+.+...+........-.+++.. ++..++.|+.+ ..+..||..++.....
T Consensus 147 ~~~~l~~g~~d-----g~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~~~~ 216 (299)
T d1nr0a2 147 DKQFVAVGGQD-----SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFELAH 216 (299)
T ss_dssp TSCEEEEEETT-----SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTEESC
T ss_pred ccccccccccc-----ccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccc
Confidence 56777788764 3688899887766554332222221222222 45666677654 3688999877665432
Q ss_pred -cCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 681 -ASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 681 -~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
..+........++.. ++++++.||.++ .+.+||..+....
T Consensus 217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg-----~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 217 TNSWTFHTAKVACVSWSPDNVRLATGSLDN-----SVIVWNMNKPSDH 259 (299)
T ss_dssp CCCCCCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTCTTSC
T ss_pred cccccccccccccccccccccceEEEcCCC-----EEEEEECCCCCcc
Confidence 233222222233332 677888888553 5899998876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=2.5 Score=40.84 Aligned_cols=189 Identities=17% Similarity=0.127 Sum_probs=94.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++..++.|+.++ .+..+|..+.+......-....- .+... .++...+.|+.+ ..+..||..+..-...
T Consensus 132 ~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~-----~~i~~~d~~~~~~~~~ 200 (388)
T d1erja_ 132 DGKFLATGAEDR-----LIRIWDIENRKIVMILQGHEQDI-YSLDYFPSGDKLVSGSGD-----RTVRIWDLRTGQCSLT 200 (388)
T ss_dssp TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEETT-----SEEEEEETTTTEEEEE
T ss_pred CCCcceeccccc-----ccccccccccccccccccccccc-cccccccccccccccccc-----eeeeeeeccccccccc
Confidence 566777787543 58888988887655432221111 12222 244555566533 4677888877665443
Q ss_pred cCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCC-C----CCcceeEEEE--CCEEEEEec
Q psy10286 587 KSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPML-T----KRCRLGVAAL--NNKIYVCGG 657 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~----~r~~~~~~~~--~~~i~v~GG 657 (748)
...... ...++.. ++.+++.|+.++ .+..||..+......-..+ . .......+.+ ++..++.|+
T Consensus 201 ~~~~~~--~~~~~~~~~~~~~l~~~~~d~-----~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~ 273 (388)
T d1erja_ 201 LSIEDG--VTTVAVSPGDGKYIAAGSLDR-----AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 273 (388)
T ss_dssp EECSSC--EEEEEECSTTCCEEEEEETTS-----CEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccccc--cccccccCCCCCeEEEEcCCC-----eEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence 322221 1122222 567777777643 5888998877654332111 1 1111222222 566777777
Q ss_pred cCCCccccEEEEEeCCCCcEEEccCCC----------CCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 658 YDGAIFLQSVEMYDPITDEWKMIASMN----------VMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~~~~p----------~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.+ ..+.+||..+.........+ ........+.. ++++++.|+.+ ..|.+||..+++-
T Consensus 274 ~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d-----g~i~vwd~~~~~~ 342 (388)
T d1erja_ 274 LD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD-----RGVLFWDKKSGNP 342 (388)
T ss_dssp TT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT-----SEEEEEETTTCCE
T ss_pred CC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC-----CEEEEEECCCCcE
Confidence 54 36778887654432211110 00111122222 56777777754 3688999887653
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=2.1 Score=39.30 Aligned_cols=182 Identities=12% Similarity=0.052 Sum_probs=97.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++.||+..... ..+.+++..+..+.. +........++++ .+++||+..-. .+.+..+++........
T Consensus 67 ~g~i~v~d~~~-----~~i~~~~~~~~~~~~--~~~~~~~p~~iavd~~g~i~v~d~~-----~~~~~~~~~~~~~~~~~ 134 (260)
T d1rwia_ 67 AGTVYVTDFNN-----RVVTLAAGSNNQTVL--PFDGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVL 134 (260)
T ss_dssp TCCEEEEETTT-----EEEEECTTCSCCEEC--CCCSCCSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCSSCEEC
T ss_pred CCCEEEeeeee-----ceeeeeeeccceeee--eeeeeeecccccccccceeEeeccc-----cccccccccccceeeee
Confidence 67898875421 234444444444432 2222222344444 36788886421 24567777766543333
Q ss_pred c--CCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCc
Q psy10286 587 K--SMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAI 662 (748)
Q Consensus 587 ~--~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~ 662 (748)
. .+..|+ +.+. -++.+|+.... ...+.+||+............ .....++++- +|.||+..-.
T Consensus 135 ~~~~~~~p~---~i~~~~~g~~~v~~~~-----~~~i~~~d~~~~~~~~~~~~~-~~~p~gi~~d~~g~l~vsd~~---- 201 (260)
T d1rwia_ 135 PFTGLNDPD---GVAVDNSGNVYVTDTD-----NNRVVKLEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHN---- 201 (260)
T ss_dssp CCCSCCSCC---EEEECTTCCEEEEEGG-----GTEEEEECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETT----
T ss_pred eecccCCcc---eeeecCCCCEeeeccc-----cccccccccccceeeeeeccc-cCCCccceeeeeeeeeeeecC----
Confidence 2 223332 3333 36678887543 247999999877665553221 1222444443 5788887632
Q ss_pred cccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 663 FLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
.+.+..|++.....+.+..-...+ -++++.- +|.|||.-.. .+.|..++...
T Consensus 202 -~~~i~~~~~~~~~~~~~~~~~~~~-P~~i~~d~~g~l~vad~~-----~~rI~~i~~~~ 254 (260)
T d1rwia_ 202 -TNQVVKLLAGSTTSTVLPFTGLNT-PLAVAVDSDRTVYVADRG-----NDRVVKLTSLE 254 (260)
T ss_dssp -TTEEEEECTTCSCCEECCCCSCCC-EEEEEECTTCCEEEEEGG-----GTEEEEECCCG
T ss_pred -CCEEEEEeCCCCeEEEEccCCCCC-eEEEEEeCCCCEEEEECC-----CCEEEEEeCCC
Confidence 357899998877666654322211 1344433 5789987321 24677776543
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=1.2 Score=39.31 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=80.7
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEE---Ec----cCCCCCcceeEEEE--ECCEEEEEeCCCCCCCCceE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN---KV----SPMCFKRSAVGAAA--LNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~---~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 573 (748)
+++.++|.+|+|=| +.+|+++.....+. .+ +.+|.... ++.. .++++|.+-| +..
T Consensus 17 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~~P~~I~~~w~glp~~Id--AA~~~~~~~~~yffkg-------~~~ 80 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKID--AVYEAPQEEKAVFFAG-------NEY 80 (200)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCCS--EEEEETTTTEEEEEET-------TEE
T ss_pred EEEecCCeEEEEeC-------CEEEEEcCCCCCCCCcEehhhccCCCCCCce--EEEEECCCCeEEEecC-------ceE
Confidence 56677999999976 35666654433321 22 23443322 2223 3778999988 568
Q ss_pred EEEeCCCCeE---EEccC--CCCCCcceEEE-E--ECCEEEEEccCCCCcccCeEEEEECCCCcEE-----Ecc----CC
Q psy10286 574 ECYEPDKDQW---RIVKS--MQKHRSAGGVI-A--FDSYVYALGGHDGLSIFDSVERYDPKTDEWT-----SVK----PM 636 (748)
Q Consensus 574 ~~yd~~~~~W---~~~~~--~~~~r~~~~~~-~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-----~~~----~~ 636 (748)
|+|+-.+-.. +.+.. +|..-..--+| . .++++|+|-|. ..|+||..+++-. .+. .+
T Consensus 81 ~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg~-------~y~ryd~~~~~vd~~yPk~I~~~w~gv 153 (200)
T d1gena_ 81 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAGD-------KFWRYNEVKKKMDPGFPKLIADAWNAI 153 (200)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEETT-------EEEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred EEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeCc-------EEEEeccccceeccCcceehhhccCCC
Confidence 8887432110 11222 22211122233 3 26899999884 7999999876521 121 22
Q ss_pred CCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcE
Q psy10286 637 LTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEW 677 (748)
Q Consensus 637 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 677 (748)
| ..-.++... ++++|++-| +..+.||..+.+.
T Consensus 154 p--~~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~~ 187 (200)
T d1gena_ 154 P--DNLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLKS 187 (200)
T ss_dssp C--SSCSEEEECTTTCEEEEEET-------TEEEEEETTEEEE
T ss_pred C--CCccEEEEecCCCEEEEEEC-------CEEEEEECCceEE
Confidence 3 222344443 588999987 5778898765443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.51 E-value=2.4 Score=38.91 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=96.6
Q ss_pred ceEEEEeCCCCceEEccCCCcccce-eEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSR-VGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||..+++.... +...... .+++.. ++.+++.++.. ..+..++....+....-..............
T Consensus 39 g~i~iWd~~~~~~~~~--~~~h~~~V~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (317)
T d1vyhc1 39 ATIKVWDYETGDFERT--LKGHTDSVQDISFDHSGKLLASCSAD-----MTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 111 (317)
T ss_dssp SCEEEEETTTCCCCEE--ECCCSSCEEEEEECTTSSEEEEEETT-----SCCCEEETTSSCEEECCCCCSSCEEEEEECS
T ss_pred CeEEEEECCCCCEEEE--EeCCCCcEEEEeeecccccccccccc-----cccccccccccccccccccccccceeeeccC
Confidence 3577788777654221 1111111 122222 44555555432 2334556555554443222222222122222
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
++...+.++.+ ..+..||..+......-.. .......+.. ++.+++.|+.++ .+..++..+.+...
T Consensus 112 ~~~~~~~~~~d-----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~-----~v~~~~~~~~~~~~ 179 (317)
T d1vyhc1 112 NGDHIVSASRD-----KTIKMWEVQTGYCVKTFTG--HREWVRMVRPNQDGTLIASCSNDQ-----TVRVWVVATKECKA 179 (317)
T ss_dssp SSSEEEEEETT-----SEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEE
T ss_pred CCceEEeeccC-----cceeEeecccceeeeEEcc--CCCcceeeecccCCCEEEEEeCCC-----eEEEEeeccceeeE
Confidence 55555566543 3567788877665332211 1112222222 556667776543 46666666554332
Q ss_pred ccC-----------CCC---------CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce-E
Q psy10286 633 VKP-----------MLT---------KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV-A 691 (748)
Q Consensus 633 ~~~-----------~p~---------~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~ 691 (748)
.-. .|. ...........+.+++.|+.+ ..+..||..+.+.... +....... +
T Consensus 180 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~~~--~~~~~~~v~~ 252 (317)
T d1vyhc1 180 ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD-----KTIKMWDVSTGMCLMT--LVGHDNWVRG 252 (317)
T ss_dssp EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT-----SEEEEEETTTTEEEEE--EECCSSCEEE
T ss_pred EEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCC-----CEEEEEECCCCcEEEE--EeCCCCCEEE
Confidence 100 000 001111112234556666543 4688889887764321 11111111 2
Q ss_pred EEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 692 LVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 692 ~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
++. -++++++.||.+ ..|.+||..+++
T Consensus 253 ~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~ 280 (317)
T d1vyhc1 253 VLFHSGGKFILSCADD-----KTLRVWDYKNKR 280 (317)
T ss_dssp EEECSSSSCEEEEETT-----TEEEEECCTTSC
T ss_pred EEECCCCCEEEEEECC-----CeEEEEECCCCc
Confidence 222 267777777754 358888887653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=93.49 E-value=0.28 Score=47.12 Aligned_cols=146 Identities=14% Similarity=0.054 Sum_probs=72.5
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC-----c
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK-----R 546 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-----r 546 (748)
..-+.+..||..+++-...-.++....-.+++.. + .++||.|..+ +.+..||..+.+=....+.... .
T Consensus 15 ~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~-----~~v~~~d~~t~~~~~~~~~~~~~~~~~~ 89 (346)
T d1jmxb_ 15 NYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GDIYGIDLDTCKNTFHANLSSVPGEVGR 89 (346)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEESCCSTTEEEE
T ss_pred cCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCC-----CcEEEEeCccCeeeeeecccccccccCC
Confidence 3446899999999975443334433333344443 4 4678877543 5789999998753322221111 1
Q ss_pred ceeEEEEE-C-CEEEEEeCCCCC------CCCceEEEEeCCCCeEEE-ccCCCCCCcc-eEEEEECCEEEEEccCCCCcc
Q psy10286 547 SAVGAAAL-N-DKLYVCGGYDGV------SSLNTVECYEPDKDQWRI-VKSMQKHRSA-GGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 547 ~~~~~~~~-~-~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~~-~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~ 616 (748)
...+++.. + ..+|+.+..... ..-..+..+|..+++-.. +...+.+... .....-++++|+.++
T Consensus 90 ~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 163 (346)
T d1jmxb_ 90 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGP------ 163 (346)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESS------
T ss_pred ceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCC------
Confidence 11222322 3 467766532110 112345556655443111 1111111111 222233667787764
Q ss_pred cCeEEEEECCCCcEEE
Q psy10286 617 FDSVERYDPKTDEWTS 632 (748)
Q Consensus 617 ~~~~~~yd~~~~~W~~ 632 (748)
++..+|..+.++..
T Consensus 164 --~~~~~~~~~~~~~~ 177 (346)
T d1jmxb_ 164 --DIYKMDVKTGKYTV 177 (346)
T ss_dssp --SEEEECTTTCCEEE
T ss_pred --cceEEEccCCCEEE
Confidence 36677777766654
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.22 E-value=0.68 Score=40.69 Aligned_cols=136 Identities=13% Similarity=0.119 Sum_probs=74.2
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc----cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV----KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
.+|.+|+|-|. -+|+.++ ..=..+ +.+|... .++...-++++|+|-|. .+|+|+..+..
T Consensus 17 ~~G~~y~Fkg~-------~~wr~~~--~~p~~Is~~Wpglp~~I-DAaf~~~~~~~yfFkG~-------~yw~y~~~~~~ 79 (192)
T d1qhua1 17 DNGTMLFFKDE-------FVWKSHR--GIRELISERWKNFIGPV-DAAFRHGHTSVYLIKGD-------KVWVYTSEKNE 79 (192)
T ss_dssp TTSCEEEEETT-------EEEETTT--TEEEEHHHHSTTCCSCC-SEEEEETTTEEEEEETT-------EEEEECC----
T ss_pred CCCcEEEEeCC-------EEEEcCC--CCeeEHhhhcCCCCCCc-cEEEEcCCCcEEEEeCC-------EEEEEeCCccc
Confidence 48899999773 3333322 211112 2344322 22222236899999884 78999754433
Q ss_pred EE---EccC-CC-CCCcceeEEEE------CCEEEEEeccCCCccccEEEEEeCCCCcEEEc--cCCCCCCcceEEEEEC
Q psy10286 630 WT---SVKP-ML-TKRCRLGVAAL------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI--ASMNVMRSRVALVANM 696 (748)
Q Consensus 630 W~---~~~~-~p-~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~ 696 (748)
.. .+.. .| .+..--++... ++++|++-| +..|.||..+..=..- +.+| .. .+++..+
T Consensus 80 ~gyPk~i~~~~~glp~~iDAA~~~~~~~~~~~~~yfFkg-------~~yw~yd~~~~~~~~~~w~gip--~~-daA~~~~ 149 (192)
T d1qhua1 80 KVYPKSLQDEFPGIPFPLDAAVECHRGECQDEGILFFQG-------NRKWFWDLTTGTKKERSWPAVG--NC-TSALRWL 149 (192)
T ss_dssp ---CEEHHHHSTTCCSSCCEEEEECBBTBSSSEEEEEET-------TEEEEEETTTTEEEEECCTTSC--CC-SEEEEET
T ss_pred cCCCcChHHhCCCCCCCceEEEEccccccCCCeEEEEeC-------CeEEEEeCCCCCcccccccCcC--Cc-ceeEEeC
Confidence 31 2211 11 11111233332 689999987 5789999887642111 2222 22 3445569
Q ss_pred CEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 697 GKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 697 ~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+++|+|-| +.-++||..+.+
T Consensus 150 g~~YfFkg-------~~y~r~~~~~~~ 169 (192)
T d1qhua1 150 GRYYCFQG-------NQFLRFNPVSGE 169 (192)
T ss_dssp TEEEEEET-------TEEEEECTTTCC
T ss_pred CcEEEEEC-------CEEEEEcCCcce
Confidence 99999977 467889887765
|
| >d1gena_ b.66.1.1 (A:) Gelatinase A (MMP-2), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Gelatinase A (MMP-2), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.86 Score=40.28 Aligned_cols=143 Identities=15% Similarity=0.167 Sum_probs=78.9
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEE---Ec----cCCCCCCcceEEEE--ECCEEEEEccCCCCcccCeE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWR---IV----KSMQKHRSAGGVIA--FDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~----~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~ 620 (748)
+++.++|.+|+|-| +..|+++.....+. .+ +.+|... . ++.. .++++|++-|. ..
T Consensus 17 Av~~~~G~~y~Fkg-------~~~wr~~~~~~~~~~P~~I~~~w~glp~~I-d-AA~~~~~~~~~yffkg~-------~~ 80 (200)
T d1gena_ 17 GIAQIRGEIFFFKD-------RFIWRTVTPRDKPMGPLLVATFWPELPEKI-D-AVYEAPQEEKAVFFAGN-------EY 80 (200)
T ss_dssp EEEEETTEEEEEET-------TEEEEESSTTSCCEEEEEGGGTCTTSCSCC-S-EEEEETTTTEEEEEETT-------EE
T ss_pred EEEecCCeEEEEeC-------CEEEEEcCCCCCCCCcEehhhccCCCCCCc-e-EEEEECCCCeEEEecCc-------eE
Confidence 56667999999977 34555543332221 22 1233221 2 3333 37789999884 68
Q ss_pred EEEECCCCcE---EEccC--CCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEE-----Ec----cCC
Q psy10286 621 ERYDPKTDEW---TSVKP--MLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWK-----MI----ASM 683 (748)
Q Consensus 621 ~~yd~~~~~W---~~~~~--~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-----~~----~~~ 683 (748)
|+|+-.+... ..+.. +|..-...-++.. ++++|++-| +..|.||..+++-. .+ +.+
T Consensus 81 ~~y~~~~~~~gyPk~i~~~g~p~~~~~iDAA~~~~~~g~~YfFkg-------~~y~ryd~~~~~vd~~yPk~I~~~w~gv 153 (200)
T d1gena_ 81 WIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG-------DKFWRYNEVKKKMDPGFPKLIADAWNAI 153 (200)
T ss_dssp EEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET-------TEEEEEETTTTEECSSCCEEHHHHSSSC
T ss_pred EEEcCcccccCCCceehhcCCCCCccceeeEEEECCCCeEEEEeC-------cEEEEeccccceeccCcceehhhccCCC
Confidence 8887432111 11211 2222122233332 589999988 68999998876421 12 223
Q ss_pred CCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 684 NVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 684 p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
|. .-.++... ++++|+|-| +..+.||..+...
T Consensus 154 p~--~idAAf~~~~~g~~Yff~g-------~~y~r~d~~~~~~ 187 (200)
T d1gena_ 154 PD--NLDAVVDLQGGGHSYFFKG-------AYYLKLENQSLKS 187 (200)
T ss_dssp CS--SCSEEEECTTTCEEEEEET-------TEEEEEETTEEEE
T ss_pred CC--CccEEEEecCCCEEEEEEC-------CEEEEEECCceEE
Confidence 32 22233333 689999977 4678888765443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=3.8 Score=38.02 Aligned_cols=178 Identities=18% Similarity=0.186 Sum_probs=92.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
..+..+|....+-... +............++..++.|+.++ .+..||..+.+-.....-. ...-.+...++
T Consensus 157 ~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~dg-----~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~ 227 (342)
T d2ovrb2 157 FMVKVWDPETETCLHT--LQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDVETGNCIHTLTGH--QSLTSGMELKD 227 (342)
T ss_dssp SCEEEEEGGGTEEEEE--ECCCSSCEEEEEECSSEEEEEETTS-----CEEEEETTTCCEEEEECCC--CSCEEEEEEET
T ss_pred CeEEEeecccceeeEE--EcCcccccccccCCCCEEEEEeCCC-----eEEEeecccceeeeEeccc--ccceeEEecCC
Confidence 3456666665442211 1111122233444677777777553 5788898876543322211 11122333455
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEEc-cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-cc
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIV-KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-VK 634 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~ 634 (748)
.+++.|+.+ ..+..||....+-... ...........+...++.+++.||.++ .+..||..+++... +.
T Consensus 228 ~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg-----~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 228 NILVSGNAD-----STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG-----TVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp TEEEEEETT-----SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS-----EEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCC-----CEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCC-----EEEEEECCCCCEEEEEe
Confidence 566677754 4678899877654333 222223333444555777778887643 68899998876532 22
Q ss_pred CCCCC--CcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 635 PMLTK--RCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 635 ~~p~~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
....+ ......+.. ++.+++.|+.+|.. ...++++|...
T Consensus 298 ~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~-~~~l~~~Df~~ 340 (342)
T d2ovrb2 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTE-ETKLLVLDFDV 340 (342)
T ss_dssp ECTTGGGTCEEEEEEECSSEEEEEEECSSSSS-CCEEEEEECCC
T ss_pred cccCCCCCCCEEEEEECCCCCEEEEEeCCCCC-eeEEEEEeCCC
Confidence 11111 111122222 45666777766532 24577777654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=92.42 E-value=4.4 Score=37.89 Aligned_cols=189 Identities=10% Similarity=-0.003 Sum_probs=102.3
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+|.||+.... ...++++||.... ......+. .-.+++.- +|.+|+.+-..+ .-.....+....+-+.+
T Consensus 38 dG~l~vt~~~-----~~~I~~i~p~g~~-~~~~~~~~--~~~gla~~~dG~l~v~~~~~~---~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 38 DGTIFVTNHE-----VGEIVSITPDGNQ-QIHATVEG--KVSGLAFTSNGDLVATGWNAD---SIPVVSLVKSDGTVETL 106 (302)
T ss_dssp TSCEEEEETT-----TTEEEEECTTCCE-EEEEECSS--EEEEEEECTTSCEEEEEECTT---SCEEEEEECTTSCEEEE
T ss_pred CCCEEEEeCC-----CCEEEEEeCCCCE-EEEEcCCC--CcceEEEcCCCCeEEEecCCc---eEEEEEecccccceeec
Confidence 7889987653 3579999988764 34444332 22333333 788998864221 12233344555555555
Q ss_pred cCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEc---cCC-----CCC-CcceeEEEECCEEEEEe
Q psy10286 587 KSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV---KPM-----LTK-RCRLGVAALNNKIYVCG 656 (748)
Q Consensus 587 ~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~-----p~~-r~~~~~~~~~~~i~v~G 656 (748)
...+........+. -++.+|+.... ...++.+|+.+..-... ... ... ...-+....++.+|+..
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~ 181 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSY-----RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN 181 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETT-----TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE
T ss_pred cccCCccccceeEEccCCCEEeeccc-----cccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec
Confidence 55555444444444 37788876433 35789999887753322 111 111 11223444577888776
Q ss_pred ccCCCccccEEEEEeCCCCcEEEc----cCCCCCCcceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 657 GYDGAIFLQSVEMYDPITDEWKMI----ASMNVMRSRVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~W~~~----~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.. ...++.++.....-... .....+ .+++. -+|.||+....+ +.|.+|+|....-.
T Consensus 182 ~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~p---dgia~d~dG~l~va~~~~-----~~V~~i~p~G~~~~ 242 (302)
T d2p4oa1 182 TE-----KMLLLRIPVDSTDKPGEPEIFVEQTNI---DDFAFDVEGNLYGATHIY-----NSVVRIAPDRSTTI 242 (302)
T ss_dssp TT-----TTEEEEEEBCTTSCBCCCEEEEESCCC---SSEEEBTTCCEEEECBTT-----CCEEEECTTCCEEE
T ss_pred CC-----CCeEEeccccccccccccccccCCCCC---cceEECCCCCEEEEEcCC-----CcEEEECCCCCEEE
Confidence 43 35788888665431111 011111 12333 367888875422 46888888776533
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=92.07 E-value=1.8 Score=43.43 Aligned_cols=179 Identities=11% Similarity=-0.037 Sum_probs=96.0
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEE-CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF 601 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 601 (748)
..+..+|..+++=.. .++.+..-|+++.- || ++|+ ++.+ ..+..||..+.+-.....++........+..
T Consensus 42 g~v~v~D~~t~~v~~--~~~~g~~~~~v~fSpDG~~l~~-~s~d-----g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 42 GQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFV-IGRD-----GKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp TEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEE-EETT-----SEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred CEEEEEECCCCcEEE--EEeCCCCeeEEEECCCCCEEEE-EcCC-----CCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 467888988876433 23334344555444 55 5555 4433 4788999887765444443332222223221
Q ss_pred -----CC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCC-----------CCCCcceeEEEECC-EEEEEeccCCCcc
Q psy10286 602 -----DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-----------LTKRCRLGVAALNN-KIYVCGGYDGAIF 663 (748)
Q Consensus 602 -----~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----------p~~r~~~~~~~~~~-~i~v~GG~~~~~~ 663 (748)
+| .+|+.+.. ...+..+|..+.+-...... +.+|....+...++ .+++....
T Consensus 114 ~~~SpDG~~l~vs~~~-----~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----- 183 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYW-----PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----- 183 (432)
T ss_dssp CSTTCTTTEEEEEEEE-----TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----
T ss_pred cccCCCCCEEEEEcCC-----CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----
Confidence 34 67776654 24688999998876554211 12222222222234 34443322
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCCCceE
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.+.++.+|..+.+-..+..++....-+.+... +++ +++.++ . .+.+.+.|..+....
T Consensus 184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~-~----~~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-A----RNKLVVIDTKEGKLV 242 (432)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-G----GTEEEEEETTTTEEE
T ss_pred CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEecc-c----cceEEEeecccceEE
Confidence 35788888877655555455555554555444 455 444443 2 246777777766544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.01 E-value=2.1 Score=40.07 Aligned_cols=231 Identities=16% Similarity=0.069 Sum_probs=111.1
Q ss_pred cceEEEEeCCCCceEEccCCC-cccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC----cce
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMS-MLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK----RSA 548 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~----r~~ 548 (748)
-+.+..+|..+.+-...-+.+ ....-.+++.- + ..+|+.|+.+ ..+..||..+++....-+.+.+ ...
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~-----~~v~v~D~~t~~~~~~~~~~~~~~~~~~~ 84 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS-----ESLVKIDLVTGETLGRIDLSTPEERVKSL 84 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT-----TEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCC-----CeEEEEECCCCcEEEEEecCCCcccccce
Confidence 367899999987643322222 22222233333 4 4688887533 4799999999876543322221 112
Q ss_pred eEEEEE--CCEEEEEeCCCC------CCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC-EEEEEccCCCCcccC
Q psy10286 549 VGAAAL--NDKLYVCGGYDG------VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS-YVYALGGHDGLSIFD 618 (748)
Q Consensus 549 ~~~~~~--~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~ 618 (748)
+.++.. ++.+|+.+.... ......+..+|..+.+=...-+. +..-+.++.. ++ .+|+.++
T Consensus 85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~-------- 154 (337)
T d1pbyb_ 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQITMLAWARDGSKLYGLGR-------- 154 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSSCCCEEECTTSSCEEEESS--------
T ss_pred eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc--cCCceEEEEcCCCCEEEEEcC--------
Confidence 223332 345555543210 11235677788887764332222 2222333333 34 5555433
Q ss_pred eEEEEECCCCcEEEccCC---CC-------CCcceeEEEECC---EEEEEeccCCC-----ccccEEEEEeCCCCcEEEc
Q psy10286 619 SVERYDPKTDEWTSVKPM---LT-------KRCRLGVAALNN---KIYVCGGYDGA-----IFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 619 ~~~~yd~~~~~W~~~~~~---p~-------~r~~~~~~~~~~---~i~v~GG~~~~-----~~~~~v~~yd~~~~~W~~~ 680 (748)
+...+|+.+.+=...-+. +. ....+......+ .....++.... .....+..+|..+..+...
T Consensus 155 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (337)
T d1pbyb_ 155 DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR 234 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE
T ss_pred CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEE
Confidence 356678776643222111 00 000000000011 11222222211 1234688899988887776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
...+............+..+++++. +.+.+||.++++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v~d~~~~~~~~~ 275 (337)
T d1pbyb_ 235 EVRIMDVFYFSTAVNPAKTRAFGAY------NVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEE------SEEEEEETTTTEEEEE
T ss_pred EecCCCcceEEEEecccceEEEEcc------ccEEEEECCCCcEEEE
Confidence 5555555444444443333333331 3688999988776543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.99 E-value=1.3 Score=42.40 Aligned_cols=144 Identities=10% Similarity=-0.076 Sum_probs=79.7
Q ss_pred eEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CC
Q psy10286 525 TVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DS 603 (748)
Q Consensus 525 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~ 603 (748)
.+++||..++...+++. ..+-...+..-+|+..+++|.+.. ..+..||..++.-..+..-+.. -.+++.. ++
T Consensus 25 ~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~~~~~~--v~~~~~spdg 97 (360)
T d1k32a3 25 QAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFEENLGN--VFAMGVDRNG 97 (360)
T ss_dssp EEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECCCCCCS--EEEEEECTTS
T ss_pred eEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEeeCCCce--EEeeeecccc
Confidence 57778888877776642 233322222227776666553321 3588999999887765432211 1222222 56
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCC-----ccccEEEEEeCCCCcEE
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA-----IFLQSVEMYDPITDEWK 678 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~-----~~~~~v~~yd~~~~~W~ 678 (748)
+..++++.+ ..++.++..+.+...+...........+..-+++.+++++.... .....++.+|..+.+=.
T Consensus 98 ~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 172 (360)
T d1k32a3 98 KFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172 (360)
T ss_dssp SEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred cccceeccc-----cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence 666666553 46888999888766554333322222233335666665543221 23456888998887544
Q ss_pred Ec
Q psy10286 679 MI 680 (748)
Q Consensus 679 ~~ 680 (748)
.+
T Consensus 173 ~~ 174 (360)
T d1k32a3 173 AA 174 (360)
T ss_dssp EC
T ss_pred ee
Confidence 43
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=91.56 E-value=5.5 Score=37.16 Aligned_cols=218 Identities=11% Similarity=0.024 Sum_probs=115.0
Q ss_pred ecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC
Q psy10286 464 STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM 542 (748)
Q Consensus 464 ~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~ 542 (748)
..++.++........++++|+... +......+.. -.+++.- ++.+|+.+-..+ ....+..+....+-..+...
T Consensus 36 ~pdG~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~--~~gla~~~dG~l~v~~~~~~---~~~~~~~~~~~~~~~~~~~~ 109 (302)
T d2p4oa1 36 APDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGK--VSGLAFTSNGDLVATGWNAD---SIPVVSLVKSDGTVETLLTL 109 (302)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSE--EEEEEECTTSCEEEEEECTT---SCEEEEEECTTSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCC--cceEEEcCCCCeEEEecCCc---eEEEEEecccccceeecccc
Confidence 334444544445568999998864 4444444322 2233333 778998864221 12233445555555555555
Q ss_pred CCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc---cCCC-----CC-CcceEEEEECCEEEEEccCC
Q psy10286 543 CFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV---KSMQ-----KH-RSAGGVIAFDSYVYALGGHD 612 (748)
Q Consensus 543 ~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~~~~-----~~-r~~~~~~~~~~~iyv~GG~~ 612 (748)
+........+.. ++.+|+.-. ....++.+|+.+..-... +.+. .. ...-.....++.+|+....
T Consensus 110 ~~~~~~n~i~~~~~g~~~v~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~- 183 (302)
T d2p4oa1 110 PDAIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE- 183 (302)
T ss_dssp TTCSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETT-
T ss_pred CCccccceeEEccCCCEEeecc-----ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCC-
Confidence 555555555554 778887643 235788899887753222 1111 11 1112334457788887654
Q ss_pred CCcccCeEEEEECCCCcEEEccCCC-CCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV 690 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 690 (748)
...+++|+.....-....... ....-.+++.- +|.||+....+ +.|.++++....-... ....+-.+.
T Consensus 184 ----~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~-----~~V~~i~p~G~~~~~~-~~~~~~~~p 253 (302)
T d2p4oa1 184 ----KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY-----NSVVRIAPDRSTTIIA-QAEQGVIGS 253 (302)
T ss_dssp ----TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT-----CCEEEECTTCCEEEEE-CGGGTCTTE
T ss_pred ----CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCC-----CcEEEECCCCCEEEEE-ecCCCCCCc
Confidence 357888987654321111000 00111233433 67888886432 5799999987544332 223333444
Q ss_pred EEEEEC------CEEEEEe
Q psy10286 691 ALVANM------GKLWAIG 703 (748)
Q Consensus 691 ~~~~~~------~~l~v~G 703 (748)
.++.++ +.|||..
T Consensus 254 t~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 254 TAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp EEEEECCSTTTTTEEEEEE
T ss_pred eEEEEcCCCCCCCEEEEEC
Confidence 555552 3588763
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.99 E-value=5.5 Score=36.17 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=97.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+|.+||..+.. ...+.++++....=.... ....-..+++++ -+|+||+....+ ..+..++..+..+...
T Consensus 24 dG~i~v~~~~~----~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~g~i~v~d~~~-----~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 24 AGNVYVTSEGM----YGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFNN-----RVVTLAAGSNNQTVLP 93 (260)
T ss_dssp TCCEEEEECSS----SCEEEEEC----CEEECC-CCSCCSCCCEEECTTCCEEEEETTT-----EEEEECTTCSCCEECC
T ss_pred CCCEEEEEcCC----CCEEEEEcCCCceEEEec-cCCccCceEEEEcCCCCEEEeeeee-----ceeeeeeeccceeeee
Confidence 67899886532 235677776655422221 111111233343 378899876432 2344444444444321
Q ss_pred cCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc--CCCCCCcceeEEE-ECCEEEEEeccCCCc
Q psy10286 587 KSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK--PMLTKRCRLGVAA-LNNKIYVCGGYDGAI 662 (748)
Q Consensus 587 ~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~-~~~~i~v~GG~~~~~ 662 (748)
......-.++++ .++.||+..-. ...+..+++......... .+..++ +.+. -++.+|+....
T Consensus 94 --~~~~~~p~~iavd~~g~i~v~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~~~g~~~v~~~~---- 159 (260)
T d1rwia_ 94 --FDGLNYPEGLAVDTQGAVYVADRG-----NNRVVKLAAGSKTQTVLPFTGLNDPD---GVAVDNSGNVYVTDTD---- 159 (260)
T ss_dssp --CCSCCSEEEEEECTTCCEEEEEGG-----GTEEEEECTTCSSCEECCCCSCCSCC---EEEECTTCCEEEEEGG----
T ss_pred --eeeeeecccccccccceeEeeccc-----cccccccccccceeeeeeecccCCcc---eeeecCCCCEeeeccc----
Confidence 111122234443 36688886432 346788887765533332 222222 3333 25678887643
Q ss_pred cccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 663 FLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
...+..||++.+....+..... ..-.+++.- +|.|||..- ....+..|++.+...+...
T Consensus 160 -~~~i~~~d~~~~~~~~~~~~~~-~~p~gi~~d~~g~l~vsd~-----~~~~i~~~~~~~~~~~~~~ 219 (260)
T d1rwia_ 160 -NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEH-----NTNQVVKLLAGSTTSTVLP 219 (260)
T ss_dssp -GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEET-----TTTEEEEECTTCSCCEECC
T ss_pred -cccccccccccceeeeeecccc-CCCccceeeeeeeeeeeec-----CCCEEEEEeCCCCeEEEEc
Confidence 2578999998776655532211 222444443 578888753 2246899998887766653
|
| >d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.59 E-value=3 Score=36.31 Aligned_cols=96 Identities=13% Similarity=0.213 Sum_probs=58.8
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEE---Ec----cCCCCCcceeEEEE------ECCEEEEEeCCCCCCCCceEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWN---KV----SPMCFKRSAVGAAA------LNDKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~---~~----~~~~~~r~~~~~~~------~~~~iyv~GG~~~~~~~~~~~ 574 (748)
++++|+|-| +.+|+|+..+.... .+ +.+|... -++.. -++++|+|-| +..+
T Consensus 59 ~~~~yfFkG-------~~yw~y~~~~~~~gyPk~i~~~~~glp~~i--DAA~~~~~~~~~~~~~yfFkg-------~~yw 122 (192)
T d1qhua1 59 HTSVYLIKG-------DKVWVYTSEKNEKVYPKSLQDEFPGIPFPL--DAAVECHRGECQDEGILFFQG-------NRKW 122 (192)
T ss_dssp TTEEEEEET-------TEEEEECC-------CEEHHHHSTTCCSSC--CEEEEECBBTBSSSEEEEEET-------TEEE
T ss_pred CCcEEEEeC-------CEEEEEeCCccccCCCcChHHhCCCCCCCc--eEEEEccccccCCCeEEEEeC-------CeEE
Confidence 679999987 57899975543331 22 1233221 22332 2789999988 5789
Q ss_pred EEeCCCCeEEEc--cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 575 CYEPDKDQWRIV--KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 575 ~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
+||..+++=..- +.+| .. .+++..+|++|+|-|. ..++||..+.+
T Consensus 123 ~yd~~~~~~~~~~w~gip--~~-daA~~~~g~~YfFkg~-------~y~r~~~~~~~ 169 (192)
T d1qhua1 123 FWDLTTGTKKERSWPAVG--NC-TSALRWLGRYYCFQGN-------QFLRFNPVSGE 169 (192)
T ss_dssp EEETTTTEEEEECCTTSC--CC-SEEEEETTEEEEEETT-------EEEEECTTTCC
T ss_pred EEeCCCCCcccccccCcC--Cc-ceeEEeCCcEEEEECC-------EEEEEcCCcce
Confidence 999888742111 1222 22 3555679999999884 78999987764
|
| >d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.49 E-value=0.094 Score=35.50 Aligned_cols=35 Identities=11% Similarity=0.317 Sum_probs=29.7
Q ss_pred EeechhHHHHHHHHHHhcchhHHHHHHHHhhhccc
Q psy10286 173 TIHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 207 (748)
Q Consensus 173 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~ 207 (748)
.++...+-+|+.||++|+++.|.+.|+..+...+.
T Consensus 9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ik 43 (55)
T d1fs1b1 9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIK 43 (55)
T ss_dssp CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 35667789999999999999999999999876543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.41 E-value=7 Score=34.96 Aligned_cols=188 Identities=14% Similarity=0.185 Sum_probs=90.2
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
...++...+.||.++ .+..||..+.+-... +......-.++..++++++.||.+ ..+..++..++...
T Consensus 21 ~~~d~~~l~sgs~Dg-----~i~vWd~~~~~~~~~--l~~H~~~V~~v~~~~~~l~s~s~D-----~~i~~~~~~~~~~~ 88 (293)
T d1p22a2 21 LQYDDQKIVSGLRDN-----TIKIWDKNTLECKRI--LTGHTGSVLCLQYDERVIITGSSD-----STVRVWDVNTGEML 88 (293)
T ss_dssp EECCSSEEEEEESSS-----CEEEEESSSCCEEEE--ECCCSSCEEEEECCSSEEEEEETT-----SCEEEEESSSCCEE
T ss_pred EEEcCCEEEEEeCCC-----eEEEEECCCCcEEEE--EecCCCCEeeeecccceeeccccc-----cccccccccccccc
Confidence 344777778888653 577889877654322 221112223444578888888865 35778888877765
Q ss_pred EccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcE-EEccCCCCCCcceeE-EEECCEEEEEeccCCCc
Q psy10286 585 IVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW-TSVKPMLTKRCRLGV-AALNNKIYVCGGYDGAI 662 (748)
Q Consensus 585 ~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~ 662 (748)
........ .........+.+.. ++.. ..+..+|..+..- ............... ......++..++ +
T Consensus 89 ~~~~~~~~-~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~-d--- 157 (293)
T d1p22a2 89 NTLIHHCE-AVLHLRFNNGMMVT-CSKD-----RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG-D--- 157 (293)
T ss_dssp EEECCCCS-CEEEEECCTTEEEE-EETT-----SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET-T---
T ss_pred cccccccc-ccccccccccceee-cccc-----cceeEeeccccccccccccccccccccccceecccccccccC-C---
Confidence 54332221 11122222333333 3322 2455566554331 111111111122222 223444443333 2
Q ss_pred cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 663 FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
..+..+|..+.+-... +.........+..++..++.|+.++ .+.+||+.+...
T Consensus 158 --~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~ 210 (293)
T d1p22a2 158 --RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDIECGAC 210 (293)
T ss_dssp --SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTS-----CEEEEETTTCCE
T ss_pred --CceeeecCCCCcEEEE--EcccccccccccCCCCeEEEecCCC-----EEEEEeccccee
Confidence 4678888877653221 1112222233334455566666443 467777766544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=89.34 E-value=13 Score=38.04 Aligned_cols=118 Identities=17% Similarity=0.222 Sum_probs=73.7
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCC--------CCcceeEEEEECCEEEEEeCCCCCCCCce
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMC--------FKRSAVGAAALNDKLYVCGGYDGVSSLNT 572 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~--------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 572 (748)
+-++.++.||+..+. ..++.+|..|.+ |+.-+..+ ......+.+..+++||+... -..
T Consensus 61 tPiv~~g~vyv~t~~------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------~g~ 128 (560)
T d1kv9a2 61 TPLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------DGR 128 (560)
T ss_dssp CCEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------TSE
T ss_pred CCEEECCEEEEECCC------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC------CCE
Confidence 336789999987642 478899998874 87543322 11223355666888887543 146
Q ss_pred EEEEeCCCCe--EEEccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEE
Q psy10286 573 VECYEPDKDQ--WRIVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTS 632 (748)
Q Consensus 573 ~~~yd~~~~~--W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~ 632 (748)
++.+|..+.+ |+....-+.. ....+-.++++.+++-+..........+..||..|.+ |+.
T Consensus 129 l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 194 (560)
T d1kv9a2 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (560)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence 8889988774 7765332221 2234556678888775443333334579999999875 664
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=88.80 E-value=10 Score=35.93 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=31.9
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE--EEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK--LWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~--l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.+.+..+|..+.+=. ..++.+.....++.. +|+ +|+.++.+ ..+.+||..+++=
T Consensus 297 ~~~v~~~d~~t~~~~--~~~~~~~~~~~~a~spDG~~~l~vt~~~d-----~~v~v~D~~tg~~ 353 (373)
T d2madh_ 297 AKEVTSVTGLVGQTS--SQISLGHDVDAISVAQDGGPDLYALSAGT-----EVLHIYDAGAGDQ 353 (373)
T ss_pred CCeEEEEECCCCcEE--EEecCCCCeeEEEECCCCCEEEEEEeCCC-----CeEEEEECCCCCE
Confidence 467889998877522 223333333344333 444 55666533 4699999998763
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=87.93 E-value=5.9 Score=39.26 Aligned_cols=181 Identities=8% Similarity=-0.027 Sum_probs=96.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..+|..+++-...- +....-|+++.- +| ++|+. +.+ ..+..+|..+.+-..+..++........+..
T Consensus 42 g~v~v~D~~t~~v~~~~--~~g~~~~~v~fSpDG~~l~~~-s~d-----g~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 42 GQIALIDGSTYEIKTVL--DTGYAVHISRLSASGRYLFVI-GRD-----GKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp TEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEE-ETT-----SEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred CEEEEEECCCCcEEEEE--eCCCCeeEEEECCCCCEEEEE-cCC-----CCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 57888998887754432 222233444443 44 56654 432 4788999888765444444443333333332
Q ss_pred -----CC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-----------CCCCcceEEEEECC-EEEEEccCCCCcc
Q psy10286 555 -----ND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-----------QKHRSAGGVIAFDS-YVYALGGHDGLSI 616 (748)
Q Consensus 555 -----~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----------~~~r~~~~~~~~~~-~iyv~GG~~~~~~ 616 (748)
+| .+|+.+..+ ..+..||..+.+-...... +.++....+...++ .+++....
T Consensus 114 ~~~SpDG~~l~vs~~~~-----~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~----- 183 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWP-----PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE----- 183 (432)
T ss_dssp CSTTCTTTEEEEEEEET-----TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-----
T ss_pred cccCCCCCEEEEEcCCC-----CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-----
Confidence 44 577766532 5788899988876543211 11222112222234 44443332
Q ss_pred cCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEE
Q psy10286 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM 679 (748)
Q Consensus 617 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 679 (748)
...+..+|..+.+-..+..++....-+.++.. +++.+++++.+ .+.+...|..+.+...
T Consensus 184 ~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~----~~~v~v~d~~~~~~~~ 243 (432)
T d1qksa2 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA----RNKLVVIDTKEGKLVA 243 (432)
T ss_dssp TTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGG----GTEEEEEETTTTEEEE
T ss_pred CCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccc----cceEEEeecccceEEE
Confidence 34688888777655444445555555555544 44433333322 3567777877766543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.75 E-value=1.7 Score=41.29 Aligned_cols=151 Identities=15% Similarity=0.003 Sum_probs=82.1
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
+|+.+++++. ..++.||..++...+++. ..+....+..-+|+..+++|.++. ..++.+|..+.+...+.
T Consensus 14 dG~~~a~~~~------g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~~~~~~~~~~ 82 (360)
T d1k32a3 14 DGDLIAFVSR------GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDYRTGKAEKFE 82 (360)
T ss_dssp GGGCEEEEET------TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE---EEEEEEETTTCCEEECC
T ss_pred CCCEEEEEEC------CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC---CEEEEEECCCCcEEEee
Confidence 5555555542 367888888887776632 222222222227766666554321 35889999998877764
Q ss_pred CCCCCCcceeEE-EECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC-----
Q psy10286 635 PMLTKRCRLGVA-ALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV----- 708 (748)
Q Consensus 635 ~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~----- 708 (748)
.... .-.+++ .-+++.+++++.+ ..++.++..+.....+...........+..-+++.+++++....
T Consensus 83 ~~~~--~v~~~~~spdg~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~ 155 (360)
T d1k32a3 83 ENLG--NVFAMGVDRNGKFAVVANDR-----FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155 (360)
T ss_dssp CCCC--SEEEEEECTTSSEEEEEETT-----SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred CCCc--eEEeeeecccccccceeccc-----cccccccccccceeeeeecccccccchhhccceeeeeeeccccccceee
Confidence 3221 112222 2266666666543 46888998887765553333222222233335666665443221
Q ss_pred CCCCeEEEEeCCCCc
Q psy10286 709 SNLPTVEVYDPSTDS 723 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~ 723 (748)
.....+.++|..++.
T Consensus 156 ~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 156 YVMQAIHVYDMEGRK 170 (360)
T ss_dssp CCEEEEEEEETTTTE
T ss_pred ccccceeeeccccCc
Confidence 122357788887764
|
| >d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Cyclin A/CDK2-associated p45, Skp1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.10 E-value=0.48 Score=32.74 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=40.2
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+. +|..|.+-+.+ |..|...+.|+...- ...|. +++|
T Consensus 3 I~L~SsDg~~f~v~~~~-a~~S~tI~~ml~~~~----~~~Ip----------------------------------l~~V 43 (61)
T d1fs1b2 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG----MDPVP----------------------------------LPNV 43 (61)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC----CSSEE----------------------------------CTTC
T ss_pred EEEEecCCCEEEecHHH-HHHhHHHHHHHhcCC----CCCcc----------------------------------cCCc
Confidence 45554 78899998884 457999999996532 12344 4899
Q ss_pred CHHHHHHHHHhhh
Q psy10286 156 DAVAMEALINFVY 168 (748)
Q Consensus 156 ~~~~~~~~l~flY 168 (748)
+...++.+++|++
T Consensus 44 ~s~iL~kVieyc~ 56 (61)
T d1fs1b2 44 NAAILKKVIQWCT 56 (61)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=86.97 E-value=4.5 Score=41.84 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=74.1
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCC--------CCcceEEEEECCEEEEEccCCCCcccCe
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQK--------HRSAGGVIAFDSYVYALGGHDGLSIFDS 619 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 619 (748)
.-++.+|.||+..+. ..++.+|.++.+ |+.-+..+. .......+..+++||+.... ..
T Consensus 61 tPiv~~g~vyv~t~~------~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------g~ 128 (560)
T d1kv9a2 61 TPLFHDGVIYTSMSW------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLD------GR 128 (560)
T ss_dssp CCEEETTEEEEEEGG------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTT------SE
T ss_pred CCEEECCEEEEECCC------CeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeCC------CE
Confidence 346789999987652 578999998875 886433221 12234566778888876542 46
Q ss_pred EEEEECCCC--cEEEccCCC-CC-CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEE
Q psy10286 620 VERYDPKTD--EWTSVKPML-TK-RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 620 ~~~yd~~~~--~W~~~~~~p-~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (748)
++.+|..+. .|+....-+ .. .......++++.+++-+..........+..||.+|.+ |+.
T Consensus 129 l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 194 (560)
T d1kv9a2 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (560)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeee
Confidence 899998886 476643222 11 2223445678877764433333334579999998875 765
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=86.51 E-value=4.4 Score=42.06 Aligned_cols=115 Identities=16% Similarity=0.269 Sum_probs=72.5
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCC--------CCcceEEEEECCEEEEEccCCCCcccCeEE
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQK--------HRSAGGVIAFDSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~--------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 621 (748)
++.+|+||+... .+.++.+|..+.+ |+.-+..+. .....+.++.++++|+.... ..++
T Consensus 74 iv~~g~vyv~t~------~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~~------g~l~ 141 (573)
T d1kb0a2 74 VVVDGIMYVSAS------WSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD------GRLI 141 (573)
T ss_dssp EEETTEEEEECG------GGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT------SEEE
T ss_pred EEECCEEEEECC------CCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEecc------ccee
Confidence 567999998754 2568999998875 887543321 12233567778988876432 4689
Q ss_pred EEECCCCc--EEEcc-CCCCC--CcceeEEEECCEEEEEeccC-CCccccEEEEEeCCCCc--EEE
Q psy10286 622 RYDPKTDE--WTSVK-PMLTK--RCRLGVAALNNKIYVCGGYD-GAIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 622 ~yd~~~~~--W~~~~-~~p~~--r~~~~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~--W~~ 679 (748)
++|..+.+ |+.-. ..+.. ......+++++.+++ |+.. .......|..||..+.+ |+.
T Consensus 142 alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~~~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYGVRGYITAYDAETGERKWRW 206 (573)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred eeccccccceecccCccCCcceEEeecceEEEeccEEE-eeccccccccceEEEEecCCccceeee
Confidence 99988775 76642 22211 122334566888765 4432 22334689999999875 764
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=85.92 E-value=5.1 Score=41.56 Aligned_cols=118 Identities=20% Similarity=0.225 Sum_probs=73.1
Q ss_pred EEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCC--------CCCcceeEEEECCEEEEEeccCCCccccE
Q psy10286 597 GVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPML--------TKRCRLGVAALNNKIYVCGGYDGAIFLQS 666 (748)
Q Consensus 597 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p--------~~r~~~~~~~~~~~i~v~GG~~~~~~~~~ 666 (748)
+=++.+|.||+.... +.++++|.++.+ |+.-...+ ......+.+..++++|+... -..
T Consensus 72 tPiv~~g~vyv~t~~------~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~------~g~ 139 (573)
T d1kb0a2 72 TPVVVDGIMYVSASW------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW------DGR 139 (573)
T ss_dssp CCEEETTEEEEECGG------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT------TSE
T ss_pred CCEEECCEEEEECCC------CeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec------ccc
Confidence 335679999987653 468999998874 87643221 11223456677888887643 247
Q ss_pred EEEEeCCCCc--EEEc-cCCCCCC--cceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 667 VEMYDPITDE--WKMI-ASMNVMR--SRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 667 v~~yd~~~~~--W~~~-~~~p~~r--~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
++.+|.++.+ |+.- ....... .....+++++.+++-+..........|..||..+++ |+.
T Consensus 140 l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 206 (573)
T d1kb0a2 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (573)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred eeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeee
Confidence 8899988765 8753 2222221 123346678888764322222234579999999975 764
|
| >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Skp1 dimerisation domain-like superfamily: Skp1 dimerisation domain-like family: Skp1 dimerisation domain-like domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.81 E-value=0.21 Score=35.66 Aligned_cols=34 Identities=12% Similarity=0.359 Sum_probs=29.7
Q ss_pred eechhHHHHHHHHHHhcchhHHHHHHHHhhhccc
Q psy10286 174 IHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 207 (748)
Q Consensus 174 i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~ 207 (748)
++...+-+|+.||++|+++.|.+.|+..+...+.
T Consensus 11 ~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ik 44 (70)
T d1nexa1 11 VDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIR 44 (70)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHc
Confidence 5667899999999999999999999999877544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.70 E-value=13 Score=33.02 Aligned_cols=182 Identities=16% Similarity=0.216 Sum_probs=87.7
Q ss_pred EECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE-E
Q psy10286 506 VMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW-R 584 (748)
Q Consensus 506 ~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~ 584 (748)
..++.+++.||.+ ..+..++..++............ ........+.+. .++.. ..+..||..+..- .
T Consensus 62 ~~~~~~l~s~s~D-----~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~ 129 (293)
T d1p22a2 62 QYDERVIITGSSD-----STVRVWDVNTGEMLNTLIHHCEA-VLHLRFNNGMMV-TCSKD-----RSIAVWDMASPTDIT 129 (293)
T ss_dssp ECCSSEEEEEETT-----SCEEEEESSSCCEEEEECCCCSC-EEEEECCTTEEE-EEETT-----SCEEEEECSSSSCCE
T ss_pred ecccceeeccccc-----ccccccccccccccccccccccc-ccccccccccee-ecccc-----cceeEeecccccccc
Confidence 3467777778754 35778888877665543322211 112222233333 33322 2445556554331 1
Q ss_pred EccCCCCCCcc-eEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCcc
Q psy10286 585 IVKSMQKHRSA-GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF 663 (748)
Q Consensus 585 ~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 663 (748)
........... .........++..++ + ..+..+|..+.+-... +............++..++.|+.++
T Consensus 130 ~~~~~~~~~~~v~~~~~~~~~~~~~s~-d-----~~i~~~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg--- 198 (293)
T d1p22a2 130 LRRVLVGHRAAVNVVDFDDKYIVSASG-D-----RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN--- 198 (293)
T ss_dssp EEEEECCCSSCEEEEEEETTEEEEEET-T-----SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTS---
T ss_pred ccccccccccccccceecccccccccC-C-----CceeeecCCCCcEEEE--EcccccccccccCCCCeEEEecCCC---
Confidence 11111111111 222223444444333 2 3688888877653321 1122222333444555667776543
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.+.+||..+.+-..... ...........++..++.|+.++ .+.+||.
T Consensus 199 --~i~i~d~~~~~~~~~~~--~~~~~v~~~~~~~~~l~sg~~dg-----~i~iwd~ 245 (293)
T d1p22a2 199 --TIRLWDIECGACLRVLE--GHEELVRCIRFDNKRIVSGAYDG-----KIKVWDL 245 (293)
T ss_dssp --CEEEEETTTCCEEEEEC--CCSSCEEEEECCSSEEEEEETTS-----CEEEEEH
T ss_pred --EEEEEecccceeeeeec--ccceeeeeccccceEEEEEcCCC-----EEEEEEC
Confidence 57889988766544322 12222334455666777777543 4666664
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.28 E-value=7 Score=34.30 Aligned_cols=135 Identities=17% Similarity=0.264 Sum_probs=72.1
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeEE--Ec----cCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWN--KV----SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~--~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
.+|.+|+|-| +.+|+++.....|. .+ +.+|.... ++...++++|+|-| +..|+|....
T Consensus 18 ~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~W~~lp~~ID--AA~~~~~~~yfFkG-------~~y~~y~~~~ 81 (210)
T d1hxna_ 18 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTVD--AAFSWEDKLYLIQD-------TKVYVFLTKG 81 (210)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSCS--EEEEETTEEEEEET-------TEEEEEECSS
T ss_pred CCCCEEEEEC-------CEEEEEcCCCCCCCcccHHHhcCCCCcccc--eEEEeCCeEEEEec-------CEEEEEEcCC
Confidence 4789999977 34566654444332 12 23443322 34456889999988 5788885432
Q ss_pred C-eE-----EEcc-CCCCCC----cce-EEEEE--CCEEEEEccCCCCcccCeEEEEECCCC---cEEEccCCCCCCcce
Q psy10286 581 D-QW-----RIVK-SMQKHR----SAG-GVIAF--DSYVYALGGHDGLSIFDSVERYDPKTD---EWTSVKPMLTKRCRL 643 (748)
Q Consensus 581 ~-~W-----~~~~-~~~~~r----~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~ 643 (748)
. +- +.+. .++.+. ..- ++... ++++|+|-|. ..|+||..+. .+...+ .+..+...
T Consensus 82 ~~~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG~-------~y~ryd~~~~~~~~~~~~p-~~~~~vDa 153 (210)
T d1hxna_ 82 GYTLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAGR-------RLWWLDLKSGAQATWTELP-WPHEKVDG 153 (210)
T ss_dssp SCEECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEETT-------EEEEEEGGGGGGCCCEEEC-CSCSCCSE
T ss_pred CcCccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEECC-------EEEEEcCCcCCccccccCC-CCCcccce
Confidence 1 11 1111 111111 111 22222 6899999884 7899998653 233322 12222211
Q ss_pred eEE-----------EECCEEEEEeccCCCccccEEEEEeC
Q psy10286 644 GVA-----------ALNNKIYVCGGYDGAIFLQSVEMYDP 672 (748)
Q Consensus 644 ~~~-----------~~~~~i~v~GG~~~~~~~~~v~~yd~ 672 (748)
+.. ..++.+|++=| +..|+||.
T Consensus 154 a~~~~~~~~~~~~~~~~~~~YfFkG-------~~y~r~~~ 186 (210)
T d1hxna_ 154 ALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRH 186 (210)
T ss_dssp EEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESS
T ss_pred eeeecCCCCccceeecCCcEEEEEC-------CEEEEEeC
Confidence 111 12467888877 56778863
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=83.09 E-value=27 Score=35.59 Aligned_cols=117 Identities=13% Similarity=0.185 Sum_probs=70.6
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECC-CC--eEEEccCCCCCc--------ceeEEEEECCEEEEEeCCCCCCCCceE
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPV-RR--VWNKVSPMCFKR--------SAVGAAALNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~-t~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (748)
++.+|.+||..+.. +.++.+|.. |. .|+.-+..+... ..-+.+..+++||+... -..+
T Consensus 59 ~v~~g~vyv~t~~~-----~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~------~g~l 127 (571)
T d2ad6a1 59 LVIGDMMYVHSAFP-----NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGHL 127 (571)
T ss_dssp EEETTEEEEECSTT-----TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSEE
T ss_pred EEECCEEEEecCCC-----CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC------CCcE
Confidence 56799999986532 357777763 43 477543322211 11245667889886422 2478
Q ss_pred EEEeCCCCe--EEEcc-C-CCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEE
Q psy10286 574 ECYEPDKDQ--WRIVK-S-MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTS 632 (748)
Q Consensus 574 ~~yd~~~~~--W~~~~-~-~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~ 632 (748)
++.|.++.+ |+.-. . -+......+-+++++.+|+-+..........+..||..|.+ |+.
T Consensus 128 ~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 128 LALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence 899999875 76532 1 11122233446788999875543333345679999998874 764
|
| >d1hxna_ b.66.1.1 (A:) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 4-bladed beta-propeller superfamily: Hemopexin-like domain family: Hemopexin-like domain domain: Hemopexin species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.18 E-value=10 Score=33.08 Aligned_cols=134 Identities=16% Similarity=0.241 Sum_probs=72.0
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEE--Ec----cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWR--IV----KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~--~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
.+|++|+|-| +..|+++.....|. .+ +.+|... -++...++++|+|-|. ..|+|....
T Consensus 18 ~~G~~y~Fkg-------~~~wr~~~~~~~~~p~~I~~~W~~lp~~I--DAA~~~~~~~yfFkG~-------~y~~y~~~~ 81 (210)
T d1hxna_ 18 NHGATYVFSG-------SHYWRLDTNRDGWHSWPIAHQWPQGPSTV--DAAFSWEDKLYLIQDT-------KVYVFLTKG 81 (210)
T ss_dssp TTSCEEEEET-------TEEEESSSSSCTTCCEEGGGTCTTSCSSC--SEEEEETTEEEEEETT-------EEEEEECSS
T ss_pred CCCCEEEEEC-------CEEEEEcCCCCCCCcccHHHhcCCCCccc--ceEEEeCCeEEEEecC-------EEEEEEcCC
Confidence 4899999987 34455554433331 12 1233222 2444568899999884 788886543
Q ss_pred CcEEEccC--------CCCCC----cceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCC---cEEEccCCCCCCcc
Q psy10286 628 DEWTSVKP--------MLTKR----CRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITD---EWKMIASMNVMRSR 689 (748)
Q Consensus 628 ~~W~~~~~--------~p~~r----~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~r~~ 689 (748)
.. +..+. ++.++ ...-++.. ++++|++-| +..|.||..+. .+...+.. ..+-.
T Consensus 82 ~~-~~~~GyPk~i~~~~g~p~~~~~~~IDAA~~~~~~gk~yffkG-------~~y~ryd~~~~~~~~~~~~p~~-~~~vD 152 (210)
T d1hxna_ 82 GY-TLVNGYPKRLEKELGSPPVISLEAVDAAFVCPGSSRLHIMAG-------RRLWWLDLKSGAQATWTELPWP-HEKVD 152 (210)
T ss_dssp SC-EECTTCCEEHHHHHCCCSSCCCSCCCEEECCTTCCEEEEEET-------TEEEEEEGGGGGGCCCEEECCS-CSCCS
T ss_pred Cc-CccCCCCcChhhccCCCCCCCCCcEeEEEEeCCCCEEEEEEC-------CEEEEEcCCcCCccccccCCCC-Ccccc
Confidence 21 11111 11111 12223332 589999987 68899998653 34433321 11111
Q ss_pred eEE-----------EEECCEEEEEeCCCCCCCCCeEEEEeC
Q psy10286 690 VAL-----------VANMGKLWAIGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 690 ~~~-----------~~~~~~l~v~GG~~~~~~~~~v~~yd~ 719 (748)
.+. ...++.+|+|=| +..+.||.
T Consensus 153 aa~~~~~~~~~~~~~~~~~~~YfFkG-------~~y~r~~~ 186 (210)
T d1hxna_ 153 GALCMEKPLGPNSCSTSGPNLYLIHG-------PNLYCYRH 186 (210)
T ss_dssp EEEEESSCSSSCCSCSSSCEEEEEET-------TEEEEESS
T ss_pred eeeeecCCCCccceeecCCcEEEEEC-------CEEEEEeC
Confidence 211 112467899977 46788863
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.83 E-value=8.6 Score=39.67 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=71.8
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeC-CCC--eEEEccCCCCCC--------cceEEEEECCEEEEEccCCCCcccCe
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEP-DKD--QWRIVKSMQKHR--------SAGGVIAFDSYVYALGGHDGLSIFDS 619 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~~~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~ 619 (748)
-++.+|.+|+..+.. +.++..|. ++. .|+.-+..+... ...++++.+++||+... ...
T Consensus 58 P~v~~g~vyv~t~~~-----~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~~~~i~~~~~------~g~ 126 (571)
T d2ad6a1 58 PLVIGDMMYVHSAFP-----NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA------NGH 126 (571)
T ss_dssp CEEETTEEEEECSTT-----TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------TSE
T ss_pred CEEECCEEEEecCCC-----CeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceeeCCeEEEEeC------CCc
Confidence 446799999986532 35788886 333 587654333221 11245778999887532 246
Q ss_pred EEEEECCCCc--EEEc-cC-CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEE
Q psy10286 620 VERYDPKTDE--WTSV-KP-MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 620 ~~~yd~~~~~--W~~~-~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (748)
+++.|.++.+ |..- .. -+......+-+++++++|+-+..........|..||..+.+ |+.
T Consensus 127 l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~ 192 (571)
T d2ad6a1 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEE
Confidence 9999999875 7652 21 12222333446778988775433222334679999998875 864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=80.65 E-value=24 Score=33.22 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=45.1
Q ss_pred CCEEEEEeccCC---CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE--EEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 649 NNKIYVCGGYDG---AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK--LWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 649 ~~~i~v~GG~~~---~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~--l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
++.+|+...... ......++++|.++++ .+..++....-.++... +++ +|+.++.+ +++.+||..++
T Consensus 275 ~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~--~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~-----~~v~v~D~~tg 347 (368)
T d1mdah_ 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQ--TSGPISNGHDSDAIIAAQDGASDNYANSAGT-----EVLDIYDAASD 347 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCC--EEECCEEEEEECEEEECCSSSCEEEEEETTT-----TEEEEEESSSC
T ss_pred CCEEEEEecCCCceeecCCceEEEEECCCCc--EeEEecCCCceeEEEECCCCCEEEEEEeCCC-----CeEEEEECCCC
Confidence 567777642221 2234679999988874 44444444333333333 543 67776533 47999999998
Q ss_pred ceEecCCCCCCCc
Q psy10286 723 SWAFVAPMCAHEG 735 (748)
Q Consensus 723 ~W~~~~~~~~~r~ 735 (748)
+=. ..++.++.
T Consensus 348 k~~--~~i~~g~~ 358 (368)
T d1mdah_ 348 QDQ--SSVELDKG 358 (368)
T ss_dssp EEE--EECCCCSC
T ss_pred CEE--EEEECCCC
Confidence 643 33444443
|
| >d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: POZ domain superfamily: POZ domain family: BTB/POZ domain domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.57 E-value=0.91 Score=32.47 Aligned_cols=62 Identities=8% Similarity=0.243 Sum_probs=39.6
Q ss_pred cEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 76 DVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 76 Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
-|+|+. +|.+|.+-+.+ |..|...+.|+...-.+.. .+.....|.+++
T Consensus 2 ~I~L~SsDg~~F~v~~~~-a~~S~tIk~ml~~~~~~~~------------------------------~~~~~~~Ipl~~ 50 (72)
T d1nexa2 2 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDD------------------------------EDDDEIVMPVPN 50 (72)
T ss_dssp EEEEECTTSCEEEEEHHH-HTTSHHHHHTC-------------------------------------------CEEECTT
T ss_pred eeEEEeCCCCEEEecHHH-HHHHHHHHHHHHhcCcccc------------------------------ccCCCCcccCCC
Confidence 366665 78899998885 4579999999975221111 011223455699
Q ss_pred CCHHHHHHHHHhhh
Q psy10286 155 IDAVAMEALINFVY 168 (748)
Q Consensus 155 ~~~~~~~~~l~flY 168 (748)
|+..+++.+++|++
T Consensus 51 V~s~iL~kVieyc~ 64 (72)
T d1nexa2 51 VRSSVLQKVIEWAE 64 (72)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999999986
|