Psyllid ID: psy10290

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
MYAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW
cccEEEEEEEccccccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccEEEEEcHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHccccccccccEEEEccccccc
ccccEEEEEEEEEHcccccHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcHHHHHHHHHHHHHHHHccccEEEccHHHHHHHccccccccEEEEEcccccccc
MYAKHILASLVSLYARASttlsvgglrqqfslreniEMSLFGAEFLRNIKHHchvigedepdvnftpngylfcasqdgaaTLEKNHQLQKELgaknvllgpeqlkakfpwlntdDIALACLGLEKEGW
MYAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKakfpwlntDDIALACLGLEKEGW
MYAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW
***KHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL*****
*YAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW
MYAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW
MYAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLE****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYAKHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query128 2.2.26 [Sep-21-2011]
Q6DCP1 499 FAD-dependent oxidoreduct N/A N/A 0.976 0.250 0.552 8e-37
Q5EA45 486 FAD-dependent oxidoreduct yes N/A 0.898 0.236 0.573 6e-35
Q96CU9 486 FAD-dependent oxidoreduct yes N/A 0.898 0.236 0.530 2e-30
Q4R510 486 FAD-dependent oxidoreduct N/A N/A 0.898 0.236 0.539 3e-30
Q3TQB2 487 FAD-dependent oxidoreduct yes N/A 0.898 0.236 0.508 1e-27
>sp|Q6DCP1|FXRD1_XENLA FAD-dependent oxidoreductase domain-containing protein 1 OS=Xenopus laevis GN=foxred1 PE=2 SV=1 Back     alignment and function desciption
 Score =  152 bits (383), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 69/125 (55%), Positives = 91/125 (72%)

Query: 4   KHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDV 63
           K ++      Y+RAST LS GG+RQQFS  ENI+MSLF A+FLRNI  H  V+ ED  D+
Sbjct: 106 KVVVVERDPTYSRASTVLSAGGIRQQFSRPENIQMSLFSAQFLRNINEHLGVVNEDRIDI 165

Query: 64  NFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 123
            F P+GYLF AS++GA  +E+N+ +Q+E GA+  L+ P+QLK KFPW+NT+ +ALA  GL
Sbjct: 166 QFNPSGYLFLASEEGATIMEENYNVQRECGAQVTLMLPDQLKKKFPWINTNGVALASYGL 225

Query: 124 EKEGW 128
           E EGW
Sbjct: 226 ENEGW 230

Xenopus laevis (taxid: 8355)
>sp|Q5EA45|FXRD1_BOVIN FAD-dependent oxidoreductase domain-containing protein 1 OS=Bos taurus GN=FOXRED1 PE=2 SV=1 Back     alignment and function description
>sp|Q96CU9|FXRD1_HUMAN FAD-dependent oxidoreductase domain-containing protein 1 OS=Homo sapiens GN=FOXRED1 PE=1 SV=2 Back     alignment and function description
>sp|Q4R510|FXRD1_MACFA FAD-dependent oxidoreductase domain-containing protein 1 OS=Macaca fascicularis GN=FOXRED1 PE=2 SV=1 Back     alignment and function description
>sp|Q3TQB2|FXRD1_MOUSE FAD-dependent oxidoreductase domain-containing protein 1 OS=Mus musculus GN=Foxred1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query128
332026977 486 FAD-dependent oxidoreductase domain-cont 0.898 0.236 0.669 8e-37
307168159 844 FAD-dependent oxidoreductase domain-cont 0.898 0.136 0.652 1e-35
147906877 499 FAD-dependent oxidoreductase domain-cont 0.976 0.250 0.552 6e-35
156717942 499 FAD-dependent oxidoreductase domain cont 0.898 0.230 0.6 7e-35
427794787 520 Hypothetical protein, partial [Rhipiceph 0.898 0.221 0.591 3e-34
156543967 517 PREDICTED: FAD-dependent oxidoreductase 0.898 0.222 0.617 3e-34
328793856 462 PREDICTED: FAD-dependent oxidoreductase 0.976 0.270 0.584 1e-33
350276190 486 FAD-dependent oxidoreductase domain cont 0.898 0.236 0.591 2e-33
380023948 412 PREDICTED: FAD-dependent oxidoreductase 0.976 0.303 0.576 2e-33
426251739 486 PREDICTED: FAD-dependent oxidoreductase 0.898 0.236 0.582 2e-33
>gi|332026977|gb|EGI67073.1| FAD-dependent oxidoreductase domain-containing protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 77/115 (66%), Positives = 87/115 (75%)

Query: 14  YARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFC 73
           Y +ASTTLSVGGLRQQFSL ENI MSL+GAEFLRNI  H  + GE   DVNF P GYL  
Sbjct: 128 YTKASTTLSVGGLRQQFSLEENIHMSLYGAEFLRNINEHLSIPGEPPIDVNFHPYGYLVL 187

Query: 74  ASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128
           A++ GA TL +N +LQ  LGAKNV+L  E+LK  FPW+NTD IA  CLGLEKEGW
Sbjct: 188 ATEAGAETLVQNSKLQNSLGAKNVVLTKEKLKYMFPWINTDGIATGCLGLEKEGW 242

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307168159|gb|EFN61438.1| FAD-dependent oxidoreductase domain-containing protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|147906877|ref|NP_001087061.1| FAD-dependent oxidoreductase domain-containing protein 1 [Xenopus laevis] gi|82182273|sp|Q6DCP1.1|FXRD1_XENLA RecName: Full=FAD-dependent oxidoreductase domain-containing protein 1 gi|50415058|gb|AAH77963.1| MGC80971 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|156717942|ref|NP_001096513.1| FAD-dependent oxidoreductase domain containing 1 [Xenopus (Silurana) tropicalis] gi|140832691|gb|AAI35472.1| LOC100125144 protein [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|427794787|gb|JAA62845.1| Hypothetical protein, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|156543967|ref|XP_001604478.1| PREDICTED: FAD-dependent oxidoreductase domain-containing protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328793856|ref|XP_624448.2| PREDICTED: FAD-dependent oxidoreductase domain-containing protein 1-like, partial [Apis mellifera] Back     alignment and taxonomy information
>gi|350276190|ref|NP_001231850.1| FAD-dependent oxidoreductase domain containing 1 [Sus scrofa] Back     alignment and taxonomy information
>gi|380023948|ref|XP_003695771.1| PREDICTED: FAD-dependent oxidoreductase domain-containing protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|426251739|ref|XP_004019579.1| PREDICTED: FAD-dependent oxidoreductase domain-containing protein 1 [Ovis aries] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query128
UNIPROTKB|F1S6H4 486 FOXRED1 "Uncharacterized prote 0.898 0.236 0.591 1.5e-33
UNIPROTKB|Q5EA45 486 FOXRED1 "FAD-dependent oxidore 0.898 0.236 0.573 4.1e-33
UNIPROTKB|F1P104 437 FOXRED1 "Uncharacterized prote 0.898 0.263 0.6 6e-32
UNIPROTKB|E2RNI5 486 FOXRED1 "Uncharacterized prote 0.898 0.236 0.556 1.3e-31
ZFIN|ZDB-GENE-080204-64 492 foxred1 "FAD-dependent oxidore 0.898 0.233 0.573 4.2e-31
FB|FBgn0033093 440 CG3270 [Drosophila melanogaste 0.859 0.25 0.573 7.9e-30
FB|FBgn0002021 515 l(2)37Bb "lethal (2) 37Bb" [Dr 0.867 0.215 0.573 9.3e-30
UNIPROTKB|Q96CU9 486 FOXRED1 "FAD-dependent oxidore 0.898 0.236 0.530 1.1e-28
RGD|1311785292 Foxred1 "FAD-dependent oxidore 0.898 0.393 0.5 1.9e-26
MGI|MGI:2446262 487 Foxred1 "FAD-dependent oxidore 0.898 0.236 0.508 2.2e-26
UNIPROTKB|F1S6H4 FOXRED1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 68/115 (59%), Positives = 89/115 (77%)

Query:    14 YARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFC 73
             Y++AST LSVGG+RQQFSL ENI++SLF AEFLRNI  +  V+ +   D+ F P+GYLF 
Sbjct:   103 YSQASTVLSVGGIRQQFSLPENIQLSLFSAEFLRNINEYLAVVDDPPLDLQFNPSGYLFL 162

Query:    74 ASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128
             AS+ GAAT+E N ++Q++ GAK  L+ PEQL+ KFPW+NT+ +ALA  GLE EGW
Sbjct:   163 ASEKGAATMENNVKVQRQEGAKVCLMSPEQLRKKFPWINTEGVALASYGLENEGW 217
GO:0005739 "mitochondrion" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
UNIPROTKB|Q5EA45 FOXRED1 "FAD-dependent oxidoreductase domain-containing protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P104 FOXRED1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNI5 FOXRED1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-64 foxred1 "FAD-dependent oxidoreductase domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0033093 CG3270 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0002021 l(2)37Bb "lethal (2) 37Bb" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q96CU9 FOXRED1 "FAD-dependent oxidoreductase domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1311785 Foxred1 "FAD-dependent oxidoreductase domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:2446262 Foxred1 "FAD-dependent oxidoreductase domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96CU9FXRD1_HUMANNo assigned EC number0.53040.89840.2366yesN/A
Q5EA45FXRD1_BOVINNo assigned EC number0.57390.89840.2366yesN/A
Q3TQB2FXRD1_MOUSENo assigned EC number0.50860.89840.2361yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query128
pfam01266234 pfam01266, DAO, FAD dependent oxidoreductase 8e-05
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase Back     alignment and domain information 
 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 10/95 (10%)

Query: 24  GGLRQQFSL---RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGA 79
           G L              ++L   +  R       +I E   D +F   G L  A  +   
Sbjct: 43  GLLHPGLRKERAPLLARLALESRDLWR------ELIEELGIDCDFRRTGVLVLARDEAEL 96

Query: 80  ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTD 114
             L +     + LG    LL  E+L+   P L+  
Sbjct: 97  DALRRLAAALRALGLPVELLDAEELRELEPGLSPG 131

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 128
TIGR02352 337 thiamin_ThiO glycine oxidase ThiO. This family con 99.74
TIGR01373 407 soxB sarcosine oxidase, beta subunit family, heter 99.73
PRK00711 416 D-amino acid dehydrogenase small subunit; Validate 99.67
PRK12409 410 D-amino acid dehydrogenase small subunit; Provisio 99.66
KOG2853|consensus 509 99.64
TIGR03364 365 HpnW_proposed FAD dependent oxidoreductase TIGR033 99.58
KOG2844|consensus 856 99.56
PF01266 358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 99.53
TIGR03329 460 Phn_aa_oxid putative aminophosphonate oxidoreducta 99.53
PRK11728 393 hydroxyglutarate oxidase; Provisional 99.44
TIGR01377 380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 99.43
COG0579 429 Predicted dehydrogenase [General function predicti 99.39
TIGR03377 516 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase 99.38
PRK11259 376 solA N-methyltryptophan oxidase; Provisional 99.38
PRK11101 546 glpA sn-glycerol-3-phosphate dehydrogenase subunit 99.27
TIGR03197 381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 99.21
PRK13339 497 malate:quinone oxidoreductase; Reviewed 99.19
PTZ00383 497 malate:quinone oxidoreductase; Provisional 99.15
TIGR01320 483 mal_quin_oxido malate:quinone-oxidoreductase. This 99.14
PRK01747 662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 99.08
PRK05257 494 malate:quinone oxidoreductase; Validated 99.04
KOG2820|consensus 399 99.01
COG0665 387 DadA Glycine/D-amino acid oxidases (deaminating) [ 98.99
KOG2665|consensus 453 98.58
PLN02464 627 glycerol-3-phosphate dehydrogenase 97.82
COG0578 532 GlpA Glycerol-3-phosphate dehydrogenase [Energy pr 97.77
PRK13369 502 glycerol-3-phosphate dehydrogenase; Provisional 97.14
PRK12266 508 glpD glycerol-3-phosphate dehydrogenase; Reviewed 96.52
KOG2852|consensus 380 95.26
KOG0042|consensus 680 92.09
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information 
Probab=99.74  E-value=3.3e-17  Score=120.24  Aligned_cols=118  Identities=15%  Similarity=0.144  Sum_probs=101.4

Q ss_pred             eeeec-ccccccccccccchhhhhc----CcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHH
Q psy10290          7 LASLV-SLYARASTTLSVGGLRQQF----SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAA   80 (128)
Q Consensus         7 ~~~~~-~~~~~gaS~~~~g~~~~~~----~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~   80 (128)
                      |+|+| ..++.|+|++|+|++++..    ....+.+|+.+|+++|+++.+++.  +..++++.|+++|.|+++ ++++.+
T Consensus        10 V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~--~~~~~~~~~~~~G~l~~a~~~~~~~   87 (337)
T TIGR02352        10 VTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALK--ELTGLDTGYHQCGTLVVAFDEDDVE   87 (337)
T ss_pred             eEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHH--HhcCCCcCeEEccEEEEeCCHHHHH
Confidence            66677 4689999999999998754    345689999999999999987763  223378899999999999 999999


Q ss_pred             HHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290         81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW  128 (128)
Q Consensus        81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~  128 (128)
                      .+++..+..+..|++.++++++++++++|.++ +++.+|+|.|.+ ||
T Consensus        88 ~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~-~~~~~g~~~~~~-g~  133 (337)
T TIGR02352        88 HLRQLADLQSATGMEVEWLSGRALRRLEPYLS-GGIRGAVFYPDD-AH  133 (337)
T ss_pred             HHHHHHHHHHhcCCceEEcCHHHHHHhCCCCC-cccceEEEcCCC-ce
Confidence            99999999999999999999999999999998 578899999886 76

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>KOG2853|consensus Back     alignment and domain information
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 Back     alignment and domain information
>KOG2844|consensus Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>KOG2820|consensus Back     alignment and domain information
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2665|consensus Back     alignment and domain information
>PLN02464 glycerol-3-phosphate dehydrogenase Back     alignment and domain information
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>KOG2852|consensus Back     alignment and domain information
>KOG0042|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query128
3axb_A 448 Putative oxidoreductase; dinucleotide-binding fold 3e-35
3nyc_A 381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 4e-24
1y56_B 382 Sarcosine oxidase; dehydrogenase, protein-protein 4e-15
2gag_B 405 Heterotetrameric sarcosine oxidase beta-subunit; f 3e-12
2gf3_A 389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 9e-11
2oln_A 397 NIKD protein; flavoprotein, rossmann fold, oxidore 4e-10
3dje_A 438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 2e-06
1ryi_A 382 Glycine oxidase; flavoprotein, protein-inhibitor c 5e-04
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448 Back     alignment and structure
 Score =  124 bits (314), Expect = 3e-35
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 20/128 (15%)

Query: 13  LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLF 72
                 +  S+   R  FS   N  ++        + +           D+    +GYLF
Sbjct: 58  APGSGDSGRSMAAFRTFFSSTMNRLVAGSTVRLFEDAQ-------RGGEDLGLVKSGYLF 110

Query: 73  CASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPW------------LNTDDIALAC 120
              ++    +E+  +   E G   +++ PE+L+ +               L   D+    
Sbjct: 111 VYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEVLGVGDVE-GA 169

Query: 121 LGLEKEGW 128
           + +   G+
Sbjct: 170 VLIRSAGF 177
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381 Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382 Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405 Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389 Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397 Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438 Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query128
1y56_B 382 Sarcosine oxidase; dehydrogenase, protein-protein 99.42
3nyc_A 381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 99.42
2gag_B 405 Heterotetrameric sarcosine oxidase beta-subunit; f 99.41
2gf3_A 389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 99.18
2oln_A 397 NIKD protein; flavoprotein, rossmann fold, oxidore 99.08
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 99.03
2uzz_A 372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 98.97
1ryi_A 382 Glycine oxidase; flavoprotein, protein-inhibitor c 98.96
3dme_A 369 Conserved exported protein; structural genomics, P 98.91
3axb_A 448 Putative oxidoreductase; dinucleotide-binding fold 98.86
3dje_A 438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 98.36
3pvc_A 689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 98.27
3ps9_A 676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 98.25
2rgh_A 571 Alpha-glycerophosphate oxidase; flavoprotein oxida 98.1
3g3e_A 351 D-amino-acid oxidase; FAD, flavoprotein, oxidoredu 97.83
3c4n_A 405 Uncharacterized protein DR_0571; alpha-beta protei 97.56
2qcu_A 501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 97.41
3da1_A 561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 96.11
1c0p_A 363 D-amino acid oxidase; alpha-beta-alpha motif, flav 96.03
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
Probab=99.42  E-value=2.3e-12  Score=94.81  Aligned_cols=113  Identities=23%  Similarity=0.381  Sum_probs=100.6

Q ss_pred             eeeecc-cccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHH
Q psy10290          7 LASLVS-LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEK   84 (128)
Q Consensus         7 ~~~~~~-~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~   84 (128)
                      |.++|. .++.|+|++|+|++++.+..+...+++.++.+.|+++.+.++      .  .|+++|.++++ +++..+.+++
T Consensus        31 V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~------~--~~~~~g~l~~~~~~~~~~~~~~  102 (382)
T 1y56_B           31 VTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYG------F--SFKQTGYLFLLYDDEEVKTFKR  102 (382)
T ss_dssp             EEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHT------C--CEECCCEEEEECSHHHHHHHHH
T ss_pred             EEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhC------C--CeeccceEEEEeCHHHHHHHHH
Confidence            667774 689999999999999999988889999999999999998877      4  78999999999 8888888888


Q ss_pred             HHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290         85 NHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW  128 (128)
Q Consensus        85 ~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~  128 (128)
                      ..+.+++.|++.++++++++.+++|.+..+.+.+++|.|.+ ||
T Consensus       103 ~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~-~~  145 (382)
T 1y56_B          103 NIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTD-GK  145 (382)
T ss_dssp             HHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTC-CE
T ss_pred             HHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCC-ee
Confidence            88889999999999999999999998876678889998876 53
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Back     alignment and structure
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query128
d1pj5a2 305 N,N-dimethylglycine oxidase {Arthrobacter globifor 99.39
d1ryia1 276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 99.37
d2gf3a1 281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 99.34
d1c0pa1 268 D-aminoacid oxidase, N-terminal domain {Rhodotorul 91.64
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.39  E-value=1.1e-12  Score=92.16  Aligned_cols=113  Identities=19%  Similarity=0.195  Sum_probs=98.1

Q ss_pred             eeeecc-c--ccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHH
Q psy10290          7 LASLVS-L--YARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL   82 (128)
Q Consensus         7 ~~~~~~-~--~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l   82 (128)
                      |+|+|. .  .++|+|++|+|+++..+..+.+.+|+..+++.|+++.+...        ..|+++|.+.++ +.++.+..
T Consensus        28 V~liE~~~~~~~~gas~~~~G~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~g~l~~~~~~~~~~~~   99 (305)
T d1pj5a2          28 ITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTEDGV--------SCFNQVGGLEVATTETRLADL   99 (305)
T ss_dssp             EEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEETTE--------ESEECCCEEEEESSHHHHHHH
T ss_pred             EEEEeCCCCCCCccccccccceeccCCCCHHHHHHHHHHHHHHHhhhhccc--------ccccccccccccchhhhHHHH
Confidence            566664 3  45889999999999988889999999999999999976543        468999999999 88888888


Q ss_pred             HHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290         83 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW  128 (128)
Q Consensus        83 ~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~  128 (128)
                      .+..+..+..|.+.++++.+++.+++|.....++.+++|.|.+ ||
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-g~  144 (305)
T d1pj5a2         100 KRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSD-GL  144 (305)
T ss_dssp             HHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTC-EE
T ss_pred             HHHHHHHHhhcccccccchHHhhhhcccccccccccceecccc-cc
Confidence            8999999999999999999999999998776778999999876 64
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Back     information, alignment and structure