Psyllid ID: psy10322

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MALVTKQILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPLRKD
Secondary Structure (PSIPRED)
cccccHHHHcccccccccccccccccEEEEEcccEEEEEEcccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccEEEEEEEEEEcccccEEEEEEcccccEEEccEEEEcccHHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHcccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccHHHcccccccccccccccccEEEEEEccccEEEEEEccEEEccEEEEccccccEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEcccccEEEEcEEEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccEEEEEEccccc
Coil and Loop (DISEMBL)
MALVTKQiletpiqhhfspysdnggttvavagpdyaiiasdtrlsagyNIYTReqsklfdhyyyrptynFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYgkrffpyytstiiagldpegkgcvysydpighteranfraggsSGALLQALLDNQVGIIQHSSKQMKSVLggirthdlALTREINALSSKLTILLGfrnqenvdktpvplEKAISVVKDAFTAAaerdiytgdgvhlcAITKDgikeynfplrkd
Flexible Loop (DISEMBL)
MALVTKQiletpiqhhfspysdnGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGfrnqenvdktpvpLEKAISVVKDAFTAAAERDIYTGDGVHLCaitkdgikeynfplrkd
Low Complexity Region (SEG)
MALVTKQILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRaggssgallqallDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPLRKD
Disordered region (IsUnstruct)
*******ILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNF*****
Disordered Region (DISOPRED)
****************FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPLRK*
Disordered Region (DISEMBL)
MALVTKQILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPLRKD
Disordered Region (DISPRO)
**************HHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQH*************THDLALTREINALSSKLTILLG*****NVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPLR**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALVTKQILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPLRKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q9IB83	237	Proteasome subunit beta t	N/A	N/A	0.789	0.869	0.425	5e-56
Q9IB84	238	Proteasome subunit beta t	N/A	N/A	0.789	0.865	0.425	6e-56
P18421	240	Proteasome subunit beta t	yes	N/A	0.808	0.879	0.425	4e-55
O09061	240	Proteasome subunit beta t	yes	N/A	0.808	0.879	0.425	4e-55
Q2TBX6	241	Proteasome subunit beta t	yes	N/A	0.808	0.875	0.421	4e-54
P20618	241	Proteasome subunit beta t	yes	N/A	0.808	0.875	0.425	5e-54
P40304	235	Proteasome subunit beta t	yes	N/A	0.785	0.872	0.456	1e-53
P23724	241	Proteasome subunit beta t	yes	N/A	0.842	0.912	0.372	5e-40
O82531	223	Proteasome subunit beta t	N/A	N/A	0.808	0.946	0.374	6e-40
O64464	221	Proteasome subunit beta t	yes	N/A	0.793	0.936	0.383	3e-39

>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1

 Score =  217 bits (553), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 156/261 (59%), Gaps = 55/261 (21%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT---- 67
           P++H FSPY+ NGGT +AVAG D+A++ASDTRLS GY+I++R+  K      Y+ T    
Sbjct: 21  PVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKC-----YKLTDTTV 75

Query: 68  -------YNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIA 120
                   + L +  I     +MY H +NK M++ ++A M+S ++YG+RFFPYY   II 
Sbjct: 76  IGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIG 135

Query: 121 GLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIR 180
           GLD EG+G VYS+DP+G  +R  ++AGGS+ A+LQ LLDNQ+                  
Sbjct: 136 GLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQI------------------ 177

Query: 181 THDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240
                                GF+N ENV++ P+  EKA+ +VKD F +AAERD+YTGD 
Sbjct: 178 ---------------------GFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDA 216

Query: 241 VHLCAITKDGIKEYNFPLRKD 261
           + +C ITK+GI+E   PLRKD
Sbjct: 217 LKICIITKEGIREEIVPLRKD 237

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.
Carassius auratus (taxid: 7957)
EC: 3EC: .EC: 4EC: .EC: 2EC: 5EC: .EC: 1

>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1

 Score =  217 bits (553), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/261 (42%), Positives = 156/261 (59%), Gaps = 55/261 (21%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT---- 67
           P++H FSPY+ NGGT +AVAG D+A++ASDTRLS GY+I++R+  K      Y+ T    
Sbjct: 22  PVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKC-----YKLTDTTV 76

Query: 68  -------YNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIA 120
                   + L +  I     +MY H +NK M++ ++A M+S ++YG+RFFPYY   II 
Sbjct: 77  IGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIG 136

Query: 121 GLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIR 180
           GLD EG+G VYS+DP+G  +R  ++AGGS+ A+LQ LLDNQ+                  
Sbjct: 137 GLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQI------------------ 178

Query: 181 THDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240
                                GF+N ENV++ P+  EKA+ +VKD F +AAERD+YTGD 
Sbjct: 179 ---------------------GFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDA 217

Query: 241 VHLCAITKDGIKEYNFPLRKD 261
           + +C ITK+GI+E   PLRKD
Sbjct: 218 LKICIITKEGIREEIVPLRKD 238

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Carassius auratus (taxid: 7957)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 45/256 (17%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
           P+Q  FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      + 
Sbjct: 24  PVQMRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 83

Query: 69  ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
              + L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct: 84  FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEE 143

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKG VYS+DP+G  +R +F+AGGS+ A+LQ LLDNQV                       
Sbjct: 144 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 180

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C 
Sbjct: 181 ----------------GFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICI 224

Query: 246 ITKDGIKEYNFPLRKD 261
           +TK+GI+E   PLRKD
Sbjct: 225 VTKEGIREETVPLRKD 240

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 45/256 (17%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
           P+Q  FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      + 
Sbjct: 24  PVQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 83

Query: 69  ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
              + L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct: 84  FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 143

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKG VYS+DP+G  +R +F+AGGS+ A+LQ LLDNQV                       
Sbjct: 144 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 180

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C 
Sbjct: 181 ----------------GFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICI 224

Query: 246 ITKDGIKEYNFPLRKD 261
           +TK+GI+E   PLRKD
Sbjct: 225 VTKEGIREETVPLRKD 240

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1

 Score =  211 bits (537), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 108/256 (42%), Positives = 154/256 (60%), Gaps = 45/256 (17%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
           P+Q  FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      + 
Sbjct: 25  PLQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84

Query: 69  ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
              + L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct: 85  FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKG VYS+DP+G  +R +F+AGGS+ A+LQ LLDNQV                       
Sbjct: 145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 181

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C 
Sbjct: 182 ----------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCI 225

Query: 246 ITKDGIKEYNFPLRKD 261
           +TK+GI+    PLRKD
Sbjct: 226 VTKEGIRGETVPLRKD 241

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2

 Score =  211 bits (536), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 153/256 (59%), Gaps = 45/256 (17%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
           P+Q  FSPY  NGGT +A+AG D+AI+ASDTRLS G++I+TR+  K +   D      + 
Sbjct: 25  PLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84

Query: 69  ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
              + L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct: 85  FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKG VYS+DP+G  +R +F+AGGS+ A+LQ LLDNQV                       
Sbjct: 145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 181

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C 
Sbjct: 182 ----------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICI 225

Query: 246 ITKDGIKEYNFPLRKD 261
           +TK+GI+E    LRKD
Sbjct: 226 VTKEGIREETVSLRKD 241

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26 PE=2 SV=2

 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 116/254 (45%), Positives = 151/254 (59%), Gaps = 49/254 (19%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRP--------TY 68
           FSPY  NGG+ VA+AG D+A+IA+DTRLS+GYNI++R QSKLF      P         +
Sbjct: 22  FSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFK---LSPQTVLGSAGCW 78

Query: 69  NFLMIFTITI-LPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
              +  T +I +  Q Y H H + M+T ++A+M+SI MY +RFFPYY S I+AG+D EGK
Sbjct: 79  ADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGK 138

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
           G VYSYDPIGH E+A +RAGG++G LLQ +LDNQ+G      K M               
Sbjct: 139 GVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIG-----HKNM--------------- 178

Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
                            N E+ DK  +  E+A+SV  D F +AAERDIYTGD V +  IT
Sbjct: 179 -----------------NLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSVLINIIT 221

Query: 248 KDGIKEYNFPLRKD 261
           KDGI+     LR+D
Sbjct: 222 KDGIEVRTLTLRQD 235

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1

 Score =  164 bits (416), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 140/258 (54%), Gaps = 38/258 (14%)

Query: 11  TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD--HYYYRPTY 68
           TPI+H F+PY DNGGT + +AG D+A++A DTR    Y+I +R + K+FD          
Sbjct: 15  TPIEHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSAN 74

Query: 69  NFLMIFTITILPFQ----MYLHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLD 123
            F       +  F+     Y  +HN K +S  S A+ I  ++YGKRFFPYY  TIIAGLD
Sbjct: 75  GFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD 134

Query: 124 PEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHD 183
            +GKG VYS+DP+G  ER   RAGG++ +L+   LDNQV        Q +    G     
Sbjct: 135 EDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNF----KNQYEPGTNG----- 185

Query: 184 LALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243
             + + +  LS                     +E+ I +V+D+FT+A ER I  GDG+ +
Sbjct: 186 -KVKKPLKYLS---------------------VEEVIKLVRDSFTSATERHIQVGDGLEI 223

Query: 244 CAITKDGIKEYNFPLRKD 261
             +TKDG+++  + L++D
Sbjct: 224 LIVTKDGVRKEFYELKRD 241

The proteasome degrades poly-ubiquitinated proteins in the cytoplasm and in the nucleus. It is essential for the regulated turnover of proteins and for the removal of misfolded proteins. The proteasome is a multicatalytic proteinase complex that is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. It has an ATP-dependent proteolytic activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1

 Score =  164 bits (415), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/262 (37%), Positives = 136/262 (51%), Gaps = 51/262 (19%)

Query: 11  TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNF 70
           T  Q ++SPY +NGGT VAVAG DY +IA+DTR+S GYNI TR+ SK+      +     
Sbjct: 2   TKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKII-----KLADKC 56

Query: 71  LMI---FTITILPFQ--------MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTII 119
           +M    F   +   Q        +Y H+HNK MS  ++ +++S  +Y KRFFPYY+  ++
Sbjct: 57  VMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVL 116

Query: 120 AGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGI 179
            GLD EGKGCV++YD +G  ER  + + GS   L+   LDNQ                  
Sbjct: 117 GGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ------------------ 158

Query: 180 RTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD 239
                        L S   +LL    Q+ V  TP+   +AI +VK  F +A ERDIYTGD
Sbjct: 159 -------------LKSPSPLLL--PAQDAV--TPLSEAEAIDLVKTCFASATERDIYTGD 201

Query: 240 GVHLCAITKDGIKEYNFPLRKD 261
            + +  +   GI+     LRKD
Sbjct: 202 RLEIVILNASGIRREEMELRKD 223

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Petunia hybrida (taxid: 4102)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1

 Score =  162 bits (409), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/248 (38%), Positives = 130/248 (52%), Gaps = 41/248 (16%)

Query: 20  YSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITIL 79
           Y +NGGT VA+AG DY ++A+DTRLS GYNI TR+ SK+ +        +      I  L
Sbjct: 9   YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68

Query: 80  PFQM------YLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
              +      Y H+HNK MS  ++A+++S  +Y KRFFPYY   ++ GLD EGKGCV++Y
Sbjct: 69  HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128

Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
           D +G  ER  + A G+  AL+  +LDNQ                               L
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQ-------------------------------L 157

Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
            S   +LL  R+      TP+   +A+ +VKD F +A ERDIYTGD + +  I K G K 
Sbjct: 158 KSPSPLLLPARDA----VTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKR 213

Query: 254 YNFPLRKD 261
               LRKD
Sbjct: 214 EYIDLRKD 221

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 5

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
322796740	237	hypothetical protein SINV_12036 [Solenop	0.789	0.869	0.513	2e-63
357605013	232	proteasome subunit beta 1 [Danaus plexip	0.800	0.900	0.496	4e-63
427787323	232	Putative 20s proteasome regulatory subun	0.808	0.909	0.5	7e-63
211939905	232	proteasome subunit beta 1 [Helicoverpa a	0.800	0.900	0.492	1e-62
389609037	232	proteasome 26kD subunit [Papilio xuthus]	0.800	0.900	0.488	2e-62
389611001	232	proteasome 26kD subunit [Papilio polytes	0.800	0.900	0.488	4e-62
91092850	235	PREDICTED: similar to proteasome beta su	0.808	0.897	0.488	6e-62
151301141	232	proteasome beta subunit [Bombyx mori] gi	0.800	0.900	0.484	2e-61
307170452	236	Proteasome subunit beta type-1 [Camponot	0.766	0.847	0.494	3e-61
156547425	236	PREDICTED: proteasome subunit beta type-	0.816	0.902	0.484	6e-61

>gi|322796740|gb|EFZ19173.1| hypothetical protein SINV_12036 [Solenopsis invicta]

 Score =  248 bits (633), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/251 (51%), Positives = 161/251 (64%), Gaps = 45/251 (17%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
           FSPYSDNGG+ VA+AG D+ +IA+DTRLS G++IYTREQ KLF   +      +  +   
Sbjct: 26  FSPYSDNGGSVVALAGDDFCVIAADTRLSTGFSIYTREQDKLFSLSNTTILGCSGCWCDT 85

Query: 74  FTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCV 130
            T+T L     QMY HEH K MST + A+M+SIM+Y KRFFPYY S I+AGLD  GKGC+
Sbjct: 86  LTLTRLLSARMQMYKHEHQKEMSTPAAAQMLSIMLYHKRFFPYYVSNILAGLDENGKGCI 145

Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
           YSYDPIGH E+  +RAGGS+GALLQ LLDNQ+                            
Sbjct: 146 YSYDPIGHCEKTTYRAGGSAGALLQPLLDNQI---------------------------- 177

Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                      G++NQE V  TPV  EKA++++KD FT+AAERDIYTGDG+ +  ITKDG
Sbjct: 178 -----------GYKNQEGVTPTPVTQEKAVAILKDVFTSAAERDIYTGDGITIKIITKDG 226

Query: 251 IKEYNFPLRKD 261
           IK+ +F LRKD
Sbjct: 227 IKDSSFALRKD 237

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605013|gb|EHJ64427.1| proteasome subunit beta 1 [Danaus plexippus]

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 126/254 (49%), Positives = 161/254 (63%), Gaps = 45/254 (17%)

Query: 14  QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNF 70
           Q  F PY+DNGG+ VA+AG DYA+I +DTRLS G++IYTREQ KLF   D      T  +
Sbjct: 18  QVRFEPYADNGGSVVAIAGDDYAVIGADTRLSTGFSIYTREQKKLFKLSDRTVLGATGCW 77

Query: 71  LMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
               T+T L     QMY HEHNK MST ++A+M+S M+Y KRFFPYY S ++AGLD EGK
Sbjct: 78  CDTLTLTRLLQARMQMYEHEHNKAMSTPAVAQMLSTMLYYKRFFPYYISNVLAGLDAEGK 137

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
           GCVYSYDPIGH ER+N+RAGGS+GA LQ LLDNQ+G+                       
Sbjct: 138 GCVYSYDPIGHCERSNYRAGGSAGAQLQPLLDNQIGL----------------------- 174

Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
                           +N +NV + P+  EKA++++KD F +AAERDIYTGD +++  IT
Sbjct: 175 ----------------KNMQNVTEAPLSREKALALLKDVFISAAERDIYTGDSIYILIIT 218

Query: 248 KDGIKEYNFPLRKD 261
            +GI+E  F LRKD
Sbjct: 219 ANGIQEEKFELRKD 232

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787323|gb|JAA59113.1| Putative 20s proteasome regulatory subunit beta type psmb1/pre7 [Rhipicephalus pulchellus]

 Score =  246 bits (628), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 128/256 (50%), Positives = 162/256 (63%), Gaps = 45/256 (17%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
           P Q HF+PYS+NGG+ VAVAG D+A+IASD+RLS+GY+I+TREQSKLF   +      T 
Sbjct: 16  PKQAHFNPYSENGGSIVAVAGDDFAVIASDSRLSSGYHIHTREQSKLFKLSNQCVLGSTG 75

Query: 69  NFLMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
            +  I T T       +MYLHEH+K+MST ++A++I  M+Y KRFFPYY S I+AGLD E
Sbjct: 76  CWCDILTFTRFLEARMKMYLHEHHKLMSTPAVAQLIVTMLYNKRFFPYYISNILAGLDEE 135

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKGC+Y YDP+GH+ER  +RAGGSS ALLQ LLDNQ+                       
Sbjct: 136 GKGCIYCYDPVGHSERVQYRAGGSSSALLQPLLDNQI----------------------- 172

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           GF+N ENV   P   E+A++++KD F +AAERDIYTGD V +  
Sbjct: 173 ----------------GFKNMENVKPEPPTRERAVNIIKDVFISAAERDIYTGDSVIIHI 216

Query: 246 ITKDGIKEYNFPLRKD 261
           I KDGIKE   PLR+D
Sbjct: 217 IDKDGIKEDKMPLRRD 232

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|211939905|gb|ACJ13433.1| proteasome subunit beta 1 [Helicoverpa armigera]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/254 (49%), Positives = 161/254 (63%), Gaps = 45/254 (17%)

Query: 14  QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNF 70
           Q  F PY+DNGG+ VA+AG D+A+I +DTRLS G++IYTREQ KLF   D      T  +
Sbjct: 18  QVRFEPYADNGGSIVAIAGDDFAVIGADTRLSTGFSIYTREQKKLFKLSDKTVLGATGCW 77

Query: 71  LMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
               T+T L     QMY HEHNK MST ++A+M+S M+Y KRFFPYY S ++AGLD +GK
Sbjct: 78  CDTLTLTRLLSARMQMYEHEHNKSMSTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDADGK 137

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
           GCVYSYDPIGH ER+N+RAGGS+GA LQ LLDNQ+G+                       
Sbjct: 138 GCVYSYDPIGHCERSNYRAGGSAGAQLQPLLDNQIGL----------------------- 174

Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
                           +N +NV + P+P EKA++++KD F +AAERDIYTGD +++  IT
Sbjct: 175 ----------------KNMQNVTEAPIPKEKALALLKDVFISAAERDIYTGDCIYILIIT 218

Query: 248 KDGIKEYNFPLRKD 261
             GI+E  F LRKD
Sbjct: 219 ASGIQEEKFELRKD 232

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609037|dbj|BAM18130.1| proteasome 26kD subunit [Papilio xuthus]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 124/254 (48%), Positives = 161/254 (63%), Gaps = 45/254 (17%)

Query: 14  QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNF 70
           Q  F PY+DNGG+ VA+AG DYA+I +DTRLS G++IYTREQ KLF   +      T  +
Sbjct: 18  QVRFEPYADNGGSVVAIAGEDYAVIGADTRLSTGFSIYTREQKKLFKLSERTVLGATGCW 77

Query: 71  LMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
               T+T L     QMY HEHNK M+T ++A+M+S M+Y KRFFPYY S I+AGLD +GK
Sbjct: 78  CDTLTLTRLLQARMQMYEHEHNKAMTTPAVAQMLSTMLYYKRFFPYYVSNILAGLDADGK 137

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
           GC+YSYDPIGH ER+ +RAGGS+GA LQ LLDNQ+G+                       
Sbjct: 138 GCIYSYDPIGHCERSTYRAGGSAGAQLQPLLDNQIGL----------------------- 174

Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
                           +N +NV + PVP EKA++++KD F +AAERDIYTGD +++  IT
Sbjct: 175 ----------------KNMQNVSEAPVPKEKALALLKDVFISAAERDIYTGDCIYIIIIT 218

Query: 248 KDGIKEYNFPLRKD 261
            +GI+E  F LRKD
Sbjct: 219 ANGIQEEKFELRKD 232

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611001|dbj|BAM19111.1| proteasome 26kD subunit [Papilio polytes]

 Score =  243 bits (621), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/254 (48%), Positives = 161/254 (63%), Gaps = 45/254 (17%)

Query: 14  QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNF 70
           Q  F PY+DNGG+ VA+AG DYA+I +DTRLS G++IYTREQ KLF   +      T  +
Sbjct: 18  QVRFEPYADNGGSVVAIAGDDYAVIGADTRLSTGFSIYTREQKKLFKLSERTVLGATGCW 77

Query: 71  LMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
               T+T L     QMY HEHNK M+T ++A+M+S M+Y KRFFPYY S I+AGLD +GK
Sbjct: 78  CDTLTLTRLLQARMQMYEHEHNKAMTTPAVAQMLSTMLYYKRFFPYYVSNILAGLDADGK 137

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
           GC+YSYDPIGH ER+ +RAGGS+GA LQ LLDNQ+G+                       
Sbjct: 138 GCIYSYDPIGHCERSTYRAGGSAGAQLQPLLDNQIGL----------------------- 174

Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
                           +N +NV + PVP EKA++++KD F +AAERDIYTGD +++  IT
Sbjct: 175 ----------------KNMQNVTEAPVPKEKALALLKDVFISAAERDIYTGDCIYIIIIT 218

Query: 248 KDGIKEYNFPLRKD 261
            +GI+E  F LRKD
Sbjct: 219 ANGIQEEKFELRKD 232

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91092850|ref|XP_968855.1| PREDICTED: similar to proteasome beta subunit [Tribolium castaneum] gi|270003046|gb|EEZ99493.1| hypothetical protein TcasGA2_TC000069 [Tribolium castaneum]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/256 (48%), Positives = 163/256 (63%), Gaps = 45/256 (17%)

Query: 12  PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
           P QHHFSPY+DNGG+ VA+AG D+ +I +DTRLSAG++IYTR+Q+KLF   D      + 
Sbjct: 19  PTQHHFSPYADNGGSVVAIAGDDFVVIGADTRLSAGFSIYTRDQNKLFRLSDTTVLGCSG 78

Query: 69  NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
            +    T+T IL    QMY  EHNK M+T + A+M+S M+Y KRFFPYY S I+ GLD E
Sbjct: 79  CWCDTLTLTRILSARMQMYQQEHNKTMATPACAQMLSTMLYYKRFFPYYISNILVGLDNE 138

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKGC+YSYDPIGH E+  +RAGGS+GALLQ LLDNQ+G+                     
Sbjct: 139 GKGCIYSYDPIGHCEKTTYRAGGSAGALLQPLLDNQIGL--------------------- 177

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                             +N +NV  + + LE+A +++KD F +AAERDI+TGD + +  
Sbjct: 178 ------------------KNMQNVKDSKLTLERAAAIIKDVFISAAERDIFTGDNILINI 219

Query: 246 ITKDGIKEYNFPLRKD 261
           ITKDGIKE +F LRKD
Sbjct: 220 ITKDGIKEDSFQLRKD 235

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|151301141|ref|NP_001093092.1| proteasome beta subunit [Bombyx mori] gi|95102764|gb|ABF51323.1| proteasome beta subunit [Bombyx mori]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 123/254 (48%), Positives = 159/254 (62%), Gaps = 45/254 (17%)

Query: 14  QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNF 70
           QH F PY+DNGG+ VA+AG DYA+I +DTRLS G++IYTR+Q KLF   +      T  +
Sbjct: 18  QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 77

Query: 71  LMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
               T+T L     QMY HEHNK M+T ++A+M+S M+Y KRFFPYY S ++AGLD +GK
Sbjct: 78  CDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGK 137

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
           GCVYSYDPIGH  R NFRAGGS+ A LQ LLDNQ+G+                       
Sbjct: 138 GCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGL----------------------- 174

Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
                           +N +NV + P+P EKA++++KD F +AAERDIYTGD +++  IT
Sbjct: 175 ----------------KNMQNVTEAPLPREKALALLKDVFISAAERDIYTGDSIYILIIT 218

Query: 248 KDGIKEYNFPLRKD 261
             GI+E  F LRKD
Sbjct: 219 ASGIQEEKFELRKD 232

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170452|gb|EFN62722.1| Proteasome subunit beta type-1 [Camponotus floridanus]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 127/257 (49%), Positives = 160/257 (62%), Gaps = 57/257 (22%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI--- 73
           FSPYSDNGG+ VA+AG D+ +IA+DTRLS G++IYTREQ KLF      P  N  ++   
Sbjct: 25  FSPYSDNGGSVVALAGDDFCVIAADTRLSTGFSIYTREQDKLF------PLSNTTILGCS 78

Query: 74  ------FTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP 124
                  T+T L     QMY HEH K M+T + A+M+SIM+Y KRFFPYY S I+AGLD 
Sbjct: 79  GCWCDTLTLTRLLSARMQMYKHEHQKEMTTPAAAQMLSIMLYHKRFFPYYVSNILAGLDE 138

Query: 125 EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
            GKGC+YSYDPIGH E+  +RAGGS+GALLQ LLDNQ+                      
Sbjct: 139 NGKGCIYSYDPIGHCEKTTYRAGGSAGALLQPLLDNQI---------------------- 176

Query: 185 ALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244
                            G++NQE V    +  EKA++++KD FT+AAERDIYTGDG+ + 
Sbjct: 177 -----------------GYKNQEGVTPAVLTQEKAVAILKDVFTSAAERDIYTGDGISIK 219

Query: 245 AITKDGIKEYNFPLRKD 261
            ITKDGIK+ +F LRKD
Sbjct: 220 IITKDGIKDSSFALRKD 236

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547425|ref|XP_001605493.1| PREDICTED: proteasome subunit beta type-1-like isoform 1 [Nasonia vitripennis] gi|345484470|ref|XP_003425047.1| PREDICTED: proteasome subunit beta type-1-like isoform 2 [Nasonia vitripennis]

 Score =  239 bits (611), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 125/258 (48%), Positives = 165/258 (63%), Gaps = 45/258 (17%)

Query: 10  ETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRP 66
           + P Q HFSPY+DNGG+ VA+AG D+++IA+D+RLSAG++IYTR+Q KLF   +      
Sbjct: 18  QVPRQQHFSPYADNGGSVVALAGDDFSLIAADSRLSAGFSIYTRKQQKLFTLSETSVLGC 77

Query: 67  TYNFLMIFTITIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLD 123
           +  +  I T+T +     QMY HEH+K MST + A+M+S M+Y KRFFPYY + I+AGLD
Sbjct: 78  SGCWCDILTLTRVMAARMQMYKHEHHKTMSTPAAAQMLSTMLYYKRFFPYYINNILAGLD 137

Query: 124 PEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHD 183
            EGKG +Y YDP+GH E+  + AGGS+GALLQ LLDNQV                     
Sbjct: 138 EEGKGVIYRYDPVGHCEKNTYVAGGSAGALLQPLLDNQV--------------------- 176

Query: 184 LALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243
                             G+ NQENV+K P+  EKA+S+VKD F +AAERDIYTGDG+++
Sbjct: 177 ------------------GYLNQENVEKIPLTKEKALSIVKDVFISAAERDIYTGDGINI 218

Query: 244 CAITKDGIKEYNFPLRKD 261
             ITKDGI +  F LR+D
Sbjct: 219 KIITKDGIVDETFDLRRD 236

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
UNIPROTKB|Q6JLB2	237	PSMB1 "Proteasome subunit beta	0.582	0.641	0.430	1.8e-50
UNIPROTKB|Q9IB83	237	psmb1-B "Proteasome subunit be	0.582	0.641	0.430	3.7e-50
UNIPROTKB|Q9IB84	238	psmb1-A "Proteasome subunit be	0.582	0.638	0.430	3.7e-50
ZFIN|ZDB-GENE-040618-2	237	psmb1 "proteasome (prosome, ma	0.582	0.641	0.430	7.7e-50
UNIPROTKB|G5E589	241	PSMB1 "Proteasome subunit beta	0.582	0.630	0.443	3.3e-49
UNIPROTKB|I3LQ51	241	PSMB1 "Proteasome subunit beta	0.582	0.630	0.443	6.8e-49
UNIPROTKB|Q2TBX6	241	PSMB1 "Proteasome subunit beta	0.582	0.630	0.443	1.8e-48
UNIPROTKB|P20618	241	PSMB1 "Proteasome subunit beta	0.582	0.630	0.449	1.8e-48
FB|FBgn0002284	235	Prosbeta6 "Proteasome beta6 su	0.590	0.655	0.475	3.3e-47
SGD|S000000137	241	PRE7 "Beta 6 subunit of the 20	0.582	0.630	0.427	1.3e-38

UNIPROTKB|Q6JLB2 PSMB1 "Proteasome subunit beta type" [Gallus gallus (taxid:9031)]

 Score = 340 (124.7 bits), Expect = 1.8e-50, Sum P(2) = 1.8e-50
 Identities = 68/158 (43%), Positives = 95/158 (60%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYN 69
             P+Q+ FSPY+ NGGT +A+AG D+ I+ASDTRLS GY I++R+  K +            
Sbjct:    21 PVQYRFSPYTFNGGTVLAIAGEDFCIVASDTRLSEGYAIHSRDSPKCYRLTEQTVIGCSG 80

Query:    70 F----LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
             F    L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct:    81 FHGDCLTLTKIIEARLKMYKHSNNKTMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 140

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             GKG VYS+DP+G  +R +F+             DNQ+G
Sbjct:   141 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQIG 178

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

UNIPROTKB|Q9IB83 psmb1-B "Proteasome subunit beta type-1-B" [Carassius auratus (taxid:7957)]

 Score = 340 (124.7 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 68/158 (43%), Positives = 100/158 (63%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
             P++H FSPY+ NGGT +AVAG D+A++ASDTRLS GY+I++R+  K +   D      + 
Sbjct:    21 PVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSG 80

Query:    69 NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                   T+T I+    +MY H +NK M++ ++A M+S ++YG+RFFPYY   II GLD E
Sbjct:    81 FHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEE 140

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             G+G VYS+DP+G  +R  ++             DNQ+G
Sbjct:   141 GRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIG 178

GO:0005839 "proteasome core complex" evidence=ISS

UNIPROTKB|Q9IB84 psmb1-A "Proteasome subunit beta type-1-A" [Carassius auratus (taxid:7957)]

 Score = 340 (124.7 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 68/158 (43%), Positives = 100/158 (63%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
             P++H FSPY+ NGGT +AVAG D+A++ASDTRLS GY+I++R+  K +   D      + 
Sbjct:    22 PVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSG 81

Query:    69 NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                   T+T I+    +MY H +NK M++ ++A M+S ++YG+RFFPYY   II GLD E
Sbjct:    82 FHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEE 141

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             G+G VYS+DP+G  +R  ++             DNQ+G
Sbjct:   142 GRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIG 179

GO:0005839 "proteasome core complex" evidence=ISS

ZFIN|ZDB-GENE-040618-2 psmb1 "proteasome (prosome, macropain) subunit, beta type, 1" [Danio rerio (taxid:7955)]

 Score = 342 (125.4 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 68/158 (43%), Positives = 97/158 (61%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD--HYYYRPTYN 69
             P++H FSPY+ NGGT +AVAG D+AI+ASDTRLS GY+I++R+  K +            
Sbjct:    21 PVEHKFSPYAFNGGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSG 80

Query:    70 F----LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
             F    L +  I     +MY H +NK M++ ++A M+S ++YG+RFFPYY   II GLD E
Sbjct:    81 FHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEE 140

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             G+G VYS+DP+G  +R  ++             DNQ+G
Sbjct:   141 GRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIG 178

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

UNIPROTKB|G5E589 PSMB1 "Proteasome subunit beta type" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 70/158 (44%), Positives = 99/158 (62%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
             P+Q  FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      + 
Sbjct:    25 PLQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84

Query:    69 NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                   T+T I+    +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct:    85 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             GKG VYS+DP+G  +R +F+             DNQVG
Sbjct:   145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 182

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|I3LQ51 PSMB1 "Proteasome subunit beta type" [Sus scrofa (taxid:9823)]

 Score = 335 (123.0 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 70/158 (44%), Positives = 98/158 (62%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
             P Q  FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      + 
Sbjct:    25 PSQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84

Query:    69 NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                   T+T I+    +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct:    85 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             GKG VYS+DP+G  +R +F+             DNQVG
Sbjct:   145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 182

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|Q2TBX6 PSMB1 "Proteasome subunit beta type-1" [Bos taurus (taxid:9913)]

 Score = 339 (124.4 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 70/158 (44%), Positives = 99/158 (62%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
             P+Q  FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      + 
Sbjct:    25 PLQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84

Query:    69 NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                   T+T I+    +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct:    85 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             GKG VYS+DP+G  +R +F+             DNQVG
Sbjct:   145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 182

GO:0005839 "proteasome core complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

UNIPROTKB|P20618 PSMB1 "Proteasome subunit beta type-1" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
 Identities = 71/158 (44%), Positives = 98/158 (62%)

Query:    12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
             P+Q  FSPY  NGGT +A+AG D+AI+ASDTRLS G++I+TR+  K +   D      + 
Sbjct:    25 PLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84

Query:    69 NFLMIFTIT-ILP--FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                   T+T I+    +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct:    85 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144

Query:   126 GKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             GKG VYS+DP+G  +R +F+             DNQVG
Sbjct:   145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVG 182

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0005839 "proteasome core complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

FB|FBgn0002284 Prosbeta6 "Proteasome beta6 subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 367 (134.2 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 77/162 (47%), Positives = 102/162 (62%)

Query:    10 ETPIQHH--FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT 67
             + P   H  FSPY  NGG+ VA+AG D+A+IA+DTRLS+GYNI++R QSKLF        
Sbjct:    13 QVPGMKHPDFSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFKLSPQTVL 72

Query:    68 -----YNFLMIFTITI-LPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAG 121
                  +   +  T +I +  Q Y H H + M+T ++A+M+SI MY +RFFPYY S I+AG
Sbjct:    73 GSAGCWADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAG 132

Query:   122 LDPEGKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVG 163
             +D EGKG VYSYDPIGH E+A +R             DNQ+G
Sbjct:   133 IDNEGKGVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIG 174

GO:0005839 "proteasome core complex" evidence=ISS;NAS

GO:0004175 "endopeptidase activity" evidence=ISS;NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0000502 "proteasome complex" evidence=NAS

GO:0006508 "proteolysis" evidence=NAS

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

SGD|S000000137 PRE7 "Beta 6 subunit of the 20S proteasome" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 315 (115.9 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 68/159 (42%), Positives = 89/159 (55%)

Query:    11 TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD--HYYYRPTY 68
             TPI+H F+PY DNGGT + +AG D+A++A DTR    Y+I +R + K+FD          
Sbjct:    15 TPIEHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSAN 74

Query:    69 NFLMIFTITILPFQ----MYLHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLD 123
              F       +  F+     Y  +HN K +S  S A+ I  ++YGKRFFPYY  TIIAGLD
Sbjct:    75 GFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD 134

Query:   124 PEGKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQV 162
              +GKG VYS+DP+G  ER   R             DNQV
Sbjct:   135 EDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV 173

GO:0005634 "nucleus" evidence=IEA;IC

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0019774 "proteasome core complex, beta-subunit complex" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IC

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0004298 "threonine-type endopeptidase activity" evidence=IEA

GO:0005839 "proteasome core complex" evidence=IEA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA

GO:0034515 "proteasome storage granule" evidence=IC

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0000502 "proteasome complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0010499 "proteasomal ubiquitin-independent protein catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P20618	PSB1_HUMAN	3, ., 4, ., 2, 5, ., 1	0.4257	0.8084	0.8755	yes	N/A
O64464	PSB1_ORYSJ	3, ., 4, ., 2, 5, ., 1	0.3830	0.7931	0.9366	yes	N/A
Q86A21	PSB1_DICDI	3, ., 4, ., 2, 5, ., 1	0.3486	0.8160	0.9025	yes	N/A
Q2TBX6	PSB1_BOVIN	3, ., 4, ., 2, 5, ., 1	0.4218	0.8084	0.8755	yes	N/A
P40304	PSB1_DROME	3, ., 4, ., 2, 5, ., 1	0.4566	0.7854	0.8723	yes	N/A
P18421	PSB1_RAT	3, ., 4, ., 2, 5, ., 1	0.4257	0.8084	0.8791	yes	N/A
P42742	PSB1_ARATH	3, ., 4, ., 2, 5, ., 1	0.3735	0.8084	0.9461	yes	N/A
P34286	PSB1_CAEEL	3, ., 4, ., 2, 5, ., 1	0.3229	0.8007	0.8100	yes	N/A
P23724	PSB6_YEAST	3, ., 4, ., 2, 5, ., 1	0.3720	0.8429	0.9128	yes	N/A
Q9UQY2	PSB6_SCHPO	3, ., 4, ., 2, 5, ., 1	0.3700	0.8314	0.9644	yes	N/A
O09061	PSB1_MOUSE	3, ., 4, ., 2, 5, ., 1	0.4257	0.8084	0.8791	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.25.1	0.914
3rd Layer	3.4.25	0.921

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	261
cd03757	212	cd03757, proteasome_beta_type_1, proteasome beta t	1e-90
cd01912	189	cd01912, proteasome_beta, proteasome beta subunit	2e-41
cd01906	182	cd01906, proteasome_protease_HslV, proteasome_prot	4e-25
COG0638	236	COG0638, PRE1, 20S proteasome, alpha and beta subu	6e-23
TIGR03634	185	TIGR03634, arc_protsome_B, proteasome endopeptidas	2e-21
pfam00227	188	pfam00227, Proteasome, Proteasome subunit	8e-21
cd03764	188	cd03764, proteasome_beta_archeal, Archeal proteaso	8e-20
cd03759	195	cd03759, proteasome_beta_type_3, proteasome beta t	1e-15
cd01901	164	cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term	9e-13
cd03762	188	cd03762, proteasome_beta_type_6, proteasome beta t	5e-05
cd03760	197	cd03760, proteasome_beta_type_4, proteasome beta t	0.001
cd01911	209	cd01911, proteasome_alpha, proteasome alpha subuni	0.001
cd03758	193	cd03758, proteasome_beta_type_2, proteasome beta t	0.003

>gnl|CDD|239726 cd03757, proteasome_beta_type_1, proteasome beta type-1 subunit

 Score =  266 bits (683), Expect = 1e-90
 Identities = 116/256 (45%), Positives = 155/256 (60%), Gaps = 55/256 (21%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFL----- 71
           FSPY+DNGGT +A+AG D+A+IA DTRLS GY+I +R+  K+F     + T   +     
Sbjct: 1   FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIF-----KLTDKCVLGSSG 55

Query: 72  MIFTITILP------FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
               I  L        +MY + HNK MST ++A+++S ++Y +RFFPYY   I+AG+D E
Sbjct: 56  FQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEE 115

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKG VYSYDP+G  ER  + AGGS+ +L+Q LLDNQV                       
Sbjct: 116 GKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQV----------------------- 152

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           G +NQ NV++TP+ LE+A+S+VKDAFT+AAERDIYTGD + +  
Sbjct: 153 ----------------GRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVI 196

Query: 246 ITKDGIKEYNFPLRKD 261
           ITKDGI+E  FPLRKD
Sbjct: 197 ITKDGIEEETFPLRKD 212

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 212

>gnl|CDD|238893 cd01912, proteasome_beta, proteasome beta subunit

 Score =  140 bits (355), Expect = 2e-41
 Identities = 64/243 (26%), Positives = 98/243 (40%), Gaps = 68/243 (27%)

Query: 25  GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI-------- 73
            T V + G D  ++A+DTR SAG  + +R   K+F   D+         L          
Sbjct: 1   TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDN-------ILLGTAGSAADTQ 53

Query: 74  FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVY 131
               +L   + L+E  + + +S  + A ++S ++Y  R FPYY S I+ G+D  G   +Y
Sbjct: 54  ALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLY 113

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
             DP+G    A F A GS       +LD                                
Sbjct: 114 YVDPLGSLIEAPFVATGSGSKYAYGILDRGY----------------------------- 144

Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
                +T                 LE+A+ +VK A  +A ERD+ +G GV +  ITKDG+
Sbjct: 145 --KPDMT-----------------LEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGV 185

Query: 252 KEY 254
           +E 
Sbjct: 186 EEL 188

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 189

>gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV

 Score = 97.6 bits (244), Expect = 4e-25
 Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 68/236 (28%)

Query: 25  GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------F 74
            T V + G D  ++A+D R+++G  + +    K+F         + +             
Sbjct: 1   TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIF------KIDDHIGCAFAGLAADAQT 54

Query: 75  TITILPF--QMYLHEHNKVMSTTSLAKMISIMMYGKRF--FPYYTSTIIAGLDPEGKGCV 130
            +  L    Q+Y   + + +   +LAK+++ ++Y       P   S ++AG+D EG   +
Sbjct: 55  LVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQL 114

Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
           YS DP G        A GS       +L+                               
Sbjct: 115 YSVDPSGSYIEYKATAIGSGSQYALGILEKLY---------------------------- 146

Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246
                 +T                 LE+AI +   A  +A ERD+Y+G  + +  I
Sbjct: 147 ---KPDMT-----------------LEEAIELALKALKSALERDLYSGGNIEVAVI 182

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182

>gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

 Score = 93.1 bits (232), Expect = 6e-23
 Identities = 55/252 (21%), Positives = 89/252 (35%), Gaps = 61/252 (24%)

Query: 13  IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYN 69
           +++        G TTV + G D  ++A+D R ++G  I +    K+F   DH        
Sbjct: 19  VEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGM--AIA 76

Query: 70  -----FLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRF--FPYYTSTIIAGL 122
                  ++        Q+Y   + + +S  +LAK++S ++        PY  S ++AG+
Sbjct: 77  GLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGV 136

Query: 123 DPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTH 182
           D  G   +YS DP G        A GS        L+ +                     
Sbjct: 137 DDGG-PRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEY-------------------- 175

Query: 183 DLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVH 242
                         L+                 LE+AI +   A  AA ERD  +G G+ 
Sbjct: 176 -----------REDLS-----------------LEEAIELAVKALRAAIERDAASGGGIE 207

Query: 243 LCAITKDGIKEY 254
           +  ITKD     
Sbjct: 208 VAVITKDEGFRK 219

Length = 236

>gnl|CDD|234287 TIGR03634, arc_protsome_B, proteasome endopeptidase complex, archaeal, beta subunit

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 65/239 (27%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-------- 75
           G TTV +   D  ++A+D R S G  + ++   K+F     +      M           
Sbjct: 1   GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVF-----QIDDYIAMTIAGSVGDAQS 55

Query: 76  -ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYS 132
            + IL  +  L+E    + MS  +LA ++S ++   RFFP+    ++ G+D EG   +YS
Sbjct: 56  LVRILKAEAKLYELRRGRPMSVKALATLLSNILNSNRFFPFIVQLLVGGVDEEGPH-LYS 114

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
            DP G     ++ A GS   +   +L+++                     D++       
Sbjct: 115 LDPAGGIIEDDYTATGSGSPVAYGVLEDEY------------------REDMS------- 149

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
                                  +E+A  +   A  +A ERD+ +G+G+ +  ITKDG+
Sbjct: 150 -----------------------VEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 185

>gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit

 Score = 86.5 bits (215), Expect = 8e-21
 Identities = 46/241 (19%), Positives = 76/241 (31%), Gaps = 70/241 (29%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQ-SKLF---DHYY---------YRPTY 68
             G T V + G D  ++A+D R + G  + +++   K+F   DH            +   
Sbjct: 2   KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDHIGMAFAGLAADAQTLV 61

Query: 69  NFLMIFTITILPFQMYLHEHNKVMS---TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
           ++           Q+Y   + + +S      +A  +          PY  S +IAG D +
Sbjct: 62  DYARAEA------QLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDED 115

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           G   +YS DP G        A GS        L+          K  K  +         
Sbjct: 116 GGPHLYSIDPSGSVIEYKATAIGSGSQYAYGFLE----------KLYKPDMT-------- 157

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                                         LE+A+ +   A   A ERD  +G  + +  
Sbjct: 158 ------------------------------LEEAVELAVKALKEAIERDALSGGNIEVAV 187

Query: 246 I 246
           I
Sbjct: 188 I 188

The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188

>gnl|CDD|239733 cd03764, proteasome_beta_archeal, Archeal proteasome, beta subunit

 Score = 83.8 bits (208), Expect = 8e-20
 Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 55/235 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD-HYYYRPTY-----NFLMIFTITIL 79
           TTV +   D  ++A+D R S G  I ++   K+F        T      +   +  I   
Sbjct: 2   TTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKA 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
             ++Y     + MS  +LA ++S ++   ++FPY    +I G+D EG   +YS DP+G  
Sbjct: 62  EARLYELRRGRPMSIKALATLLSNILNSSKYFPYIVQLLIGGVDEEGPH-LYSLDPLGSI 120

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
               + A GS       +L+++                                   +T+
Sbjct: 121 IEDKYTATGSGSPYAYGVLEDE-------------------------------YKEDMTV 149

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
                            E+A  +   A  +A ERD  +GDG+ +  ITKDG KE 
Sbjct: 150 -----------------EEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKEL 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239728 cd03759, proteasome_beta_type_3, proteasome beta type-3 subunit

 Score = 72.7 bits (179), Expect = 1e-15
 Identities = 59/245 (24%), Positives = 94/245 (38%), Gaps = 65/245 (26%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM--------IF 74
           NGG  VA+AG D   IASD RL       + +  K+F     R      +        + 
Sbjct: 2   NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVF-----RIGDRLYIGLAGLATDVQ 56

Query: 75  TIT-ILPFQ--MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVY 131
           T+   L F+  +Y     + +   + + +IS ++Y KRF PY+   ++AGLDP+GK  + 
Sbjct: 57  TLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFIC 116

Query: 132 SYDPIGHTERA-NFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
           + D IG      +F   G++        +   G+ +                  +L R  
Sbjct: 117 TMDLIGCPSIPSDFVVSGTAS-------EQLYGMCE------------------SLWRP- 150

Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                              D  P  L + IS    A  +A +RD  +G G  +  ITKD 
Sbjct: 151 -------------------DMEPDELFETIS---QALLSAVDRDALSGWGAVVYIITKDK 188

Query: 251 IKEYN 255
           +    
Sbjct: 189 VTTRT 193

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 195

>gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

 Score = 64.0 bits (156), Expect = 9e-13
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 25  GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DH------YYYRPTYNFLMIFT 75
            T+VA+ G    ++A+D RLS+G  +      K+    D                +    
Sbjct: 1   STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLR 60

Query: 76  ITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRF-FPYYTSTIIAGLDPEGKGCVYSYD 134
             +   Q+Y   + + +S  +LAK ++ ++       P+  + I+AG+D  G G +Y  D
Sbjct: 61  EAL---QLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGG-GNLYYID 116

Query: 135 PIGH-TERANFRAGGSSGALLQALLDNQ 161
           P G   E     A GS     ++LL+  
Sbjct: 117 PSGPVIENPGAVATGSRSQRAKSLLEKL 144

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164

>gnl|CDD|239731 cd03762, proteasome_beta_type_6, proteasome beta type-6 subunit

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 45/240 (18%), Positives = 72/240 (30%), Gaps = 65/240 (27%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM-----------IF 74
           T +AV      ++ +D+R S G  +  R   KL      +                  I 
Sbjct: 2   TIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLT-----QLHDRIYCCRSGSAADTQAIA 56

Query: 75  TITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYD 134
                   M+  E  +     + A +   + Y  +        I+AG D +  G VYS  
Sbjct: 57  DYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYKEM-LSAGIIVAGWDEQNGGQVYSIP 115

Query: 135 PIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALS 194
             G   R  F  GGS    +   +D                                   
Sbjct: 116 LGGMLIRQPFAIGGSGSTYIYGYVDAN--------------------------------- 142

Query: 195 SKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
                   ++    +       E+ I  VK+A + A  RD  +G  + L  ITKDG++  
Sbjct: 143 --------YK--PGMTL-----EECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVERK 187

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 188

>gnl|CDD|239729 cd03760, proteasome_beta_type_4, proteasome beta type-4 subunit

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 35/157 (22%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAG----YNIYTREQSKLFDHYYYRPTYNFLMIFTITIL 79
           G + +A+   D  IIA+DT  S G    +    R   K+ D+         L+  +    
Sbjct: 2   GTSVIAIKYKDGVIIAADTLGSYGSLARFKNVER-IFKVGDNT--------LLGASGDYA 52

Query: 80  PFQMYLHEH-------------NKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDP 124
            FQ YL                   +S   +   ++ ++Y +R    P + + ++ G+D 
Sbjct: 53  DFQ-YLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDN 111

Query: 125 EGK---GCVYSYDPIGHTERANFRAGGSSGALLQALL 158
           EG+   G V   D +G        A G    L   LL
Sbjct: 112 EGEPFLGYV---DLLGTAYEDPHVATGFGAYLALPLL 145

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 197

>gnl|CDD|238892 cd01911, proteasome_alpha, proteasome alpha subunit

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 45/143 (31%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTIT---- 77
            NG T V + G D  ++A + ++           SKL D     P+     IF I     
Sbjct: 25  KNGSTAVGIKGKDGVVLAVEKKV----------TSKLLD-----PSSVEK-IFKIDDHIG 68

Query: 78  -----------ILPFQM------YLHEHNKVMSTTSLAKMISIMM------YGKRFFPYY 114
                      +L  +       Y + + + +    L K I+ +        G R  P+ 
Sbjct: 69  CAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVR--PFG 126

Query: 115 TSTIIAGLDPEGKGCVYSYDPIG 137
            S +IAG D EG   +Y  DP G
Sbjct: 127 VSLLIAGYDEEGGPQLYQTDPSG 149

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each. Length = 209

>gnl|CDD|239727 cd03758, proteasome_beta_type_2, proteasome beta type-2 subunit

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 18/147 (12%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           T + + G D+ I+A+DT  +    +   ++ K+     Y+ + + LM           F 
Sbjct: 3   TLIGIKGKDFVILAADTSAARSILVLKDDEDKI-----YKLSDHKLMACSGEAGDRLQFA 57

Query: 76  ITILP-FQMYLHEHNKVMSTTSLAKMI--SIMMYGKRFFPYYTSTIIAGLDPEGKGCVYS 132
             I    Q+Y   +   +S  + A      +    +   PY  + ++AG D      +Y 
Sbjct: 58  EYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYY 117

Query: 133 YDPIGHTERANFRAGGSSGALLQALLD 159
            D +G   +  + A G       ++LD
Sbjct: 118 IDYLGTLVKVPYAAHGYGAYFCLSILD 144

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each. Length = 193

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG0179|consensus	235		100.0
cd03757	212	proteasome_beta_type_1 proteasome beta type-1 subu	100.0
cd03759	195	proteasome_beta_type_3 proteasome beta type-3 subu	100.0
cd03760	197	proteasome_beta_type_4 proteasome beta type-4 subu	100.0
cd03761	188	proteasome_beta_type_5 proteasome beta type-5 subu	100.0
cd03758	193	proteasome_beta_type_2 proteasome beta type-2 subu	100.0
TIGR03634	185	arc_protsome_B proteasome endopeptidase complex, a	100.0
COG0638	236	PRE1 20S proteasome, alpha and beta subunits [Post	100.0
cd03762	188	proteasome_beta_type_6 proteasome beta type-6 subu	100.0
cd03764	188	proteasome_beta_archeal Archeal proteasome, beta s	100.0
PTZ00488	247	Proteasome subunit beta type-5; Provisional	100.0
cd03763	189	proteasome_beta_type_7 proteasome beta type-7 subu	100.0
cd01912	189	proteasome_beta proteasome beta subunit. The 20S p	100.0
TIGR03690	219	20S_bact_beta proteasome, beta subunit, bacterial	100.0
cd03750	227	proteasome_alpha_type_2 proteasome_alpha_type_2. T	100.0
PTZ00246	253	proteasome subunit alpha; Provisional	100.0
cd03765	236	proteasome_beta_bacterial Bacterial proteasome, be	100.0
cd03752	213	proteasome_alpha_type_4 proteasome_alpha_type_4. T	100.0
TIGR03633	224	arc_protsome_A proteasome endopeptidase complex, a	100.0
cd03754	215	proteasome_alpha_type_6 proteasome_alpha_type_6. T	100.0
PF00227	190	Proteasome: Proteasome subunit; InterPro: IPR00135	100.0
cd03755	207	proteasome_alpha_type_7 proteasome_alpha_type_7. T	100.0
cd01911	209	proteasome_alpha proteasome alpha subunit. The 20S	100.0
PRK03996	241	proteasome subunit alpha; Provisional	100.0
cd01906	182	proteasome_protease_HslV proteasome_protease_HslV.	100.0
cd03756	211	proteasome_alpha_archeal proteasome_alpha_archeal.	100.0
cd03749	211	proteasome_alpha_type_1 proteasome_alpha_type_1. T	100.0
KOG0180|consensus	204		100.0
cd03751	212	proteasome_alpha_type_3 proteasome_alpha_type_3. T	100.0
cd03753	213	proteasome_alpha_type_5 proteasome_alpha_type_5. T	100.0
TIGR03691	228	20S_bact_alpha proteasome, alpha subunit, bacteria	100.0
KOG0185|consensus	256		100.0
KOG0174|consensus	224		100.0
KOG0177|consensus	200		100.0
KOG0176|consensus	241		100.0
KOG0175|consensus	285		99.98
KOG0173|consensus	271		99.97
PRK05456	172	ATP-dependent protease subunit HslV; Provisional	99.96
cd01913	171	protease_HslV Protease HslV and the ATPase/chapero	99.96
KOG0183|consensus	249		99.95
KOG0178|consensus	249		99.95
KOG0182|consensus	246		99.95
TIGR03692	171	ATP_dep_HslV ATP-dependent protease HslVU, peptida	99.95
KOG0181|consensus	233		99.95
cd01901	164	Ntn_hydrolase The Ntn hydrolases (N-terminal nucle	99.94
KOG0184|consensus	254		99.94
KOG0863|consensus	264		99.9
COG3484	255	Predicted proteasome-type protease [Posttranslatio	99.01
COG5405	178	HslV ATP-dependent protease HslVU (ClpYQ), peptida	98.52
PF09894	194	DUF2121: Uncharacterized protein conserved in arch	93.74

>KOG0179|consensus

Probab=100.00  E-value=1.9e-50  Score=349.64  Aligned_cols=209  Identities=55%  Similarity=0.923  Sum_probs=199.3

Q ss_pred             hcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HH
Q psy10322          9 LETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------IT   77 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~l   77 (261)
                      -+++.++.|+||.+||||+|||++.|+.|||+|||.+.|+.|.+|+.+|||+++     |+++++.+           .+
T Consensus        14 s~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~-----D~~vl~~sGF~aD~l~L~k~i   88 (235)
T KOG0179|consen   14 SKTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLG-----DNIVLGSSGFYADTLALVKVI   88 (235)
T ss_pred             cCccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheecc-----CceEEecccchhhHHHHHHHH
Confidence            456788889999999999999999999999999999999999999999999999     99999765           78


Q ss_pred             HHHHHhhhhhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322         78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL  157 (261)
Q Consensus        78 r~~~~~y~~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~  157 (261)
                      +.+++.|+++++..|+++.+|++|+.+||.+|++||++..|+||+|++|||.+|++||.|++++..+.|.|+++.+++|+
T Consensus        89 ~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~Pf  168 (235)
T KOG0179|consen   89 KSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPF  168 (235)
T ss_pred             HHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhh
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCC--CCCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy10322        158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQE--NVDKTPVPLEKAISVVKDAFTAAAERDI  235 (261)
Q Consensus       158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~eea~~l~~~al~~~~~rd~  235 (261)
                      ||++.                                       +++||.  +..++.+|+|+|++|++++|.+|.|||+
T Consensus       169 LDnQi---------------------------------------~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI  209 (235)
T KOG0179|consen  169 LDNQI---------------------------------------GHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDI  209 (235)
T ss_pred             hhhhc---------------------------------------cCcCcccccCcccccCHHHHHHHHHHHhhhhhhccc
Confidence            99997                                       666663  5668899999999999999999999999


Q ss_pred             CCCCcEEEEEEEcCCEEEEeeccCCC
Q psy10322        236 YTGDGVHLCAITKDGIKEYNFPLRKD  261 (261)
Q Consensus       236 ~~g~~v~i~~itkdg~~~~~~~~r~~  261 (261)
                      .+|+.++||+++|||++.+.+|||+|
T Consensus       210 ~tGD~l~i~I~tk~gV~~e~~~LrkD  235 (235)
T KOG0179|consen  210 YTGDKLEICIITKDGVEVETLPLRKD  235 (235)
T ss_pred             ccCCcEEEEEEecCCEEEEeeeccCC
Confidence            99999999999999999999999998

>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit

Probab=100.00  E-value=2e-49  Score=348.76  Aligned_cols=201  Identities=56%  Similarity=0.948  Sum_probs=189.2

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      |+||+++|+|+|||+|+||||||+|+|.++|.++..++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~~r~~~~~~~   75 (212)
T cd03757           1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLT-----DKCVLGSSGFQADILALTKRLKARIKMYK   75 (212)
T ss_pred             CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcC-----CCEEEEccchHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999888889999999999     99999886           8888999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      +.+|++|+++.+|+++++++|++|.+||+|++||||||++++|+||++||+|++++++++|+|+|+.+++++||+.|   
T Consensus        76 ~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~---  152 (212)
T cd03757          76 YSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQV---  152 (212)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHH---
Confidence            99999999999999999999998889999999999999888899999999999999999999999999999999988   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                          +.++|...|+++||+|||++++++||+.+.+||+.+|++++|++
T Consensus       153 ------------------------------------~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~i  196 (212)
T cd03757         153 ------------------------------------GRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVI  196 (212)
T ss_pred             ------------------------------------HhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEE
Confidence                                                22222223569999999999999999999999999999999999


Q ss_pred             EEcCCEEEEeeccCCC
Q psy10322        246 ITKDGIKEYNFPLRKD  261 (261)
Q Consensus       246 itkdg~~~~~~~~r~~  261 (261)
                      ||++|++++.+++|+|
T Consensus       197 it~~g~~~~~~~~~~~  212 (212)
T cd03757         197 ITKDGIEEETFPLRKD  212 (212)
T ss_pred             EcCCCEEEEeeccCCC
Confidence            9999999999999998

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit

Probab=100.00  E-value=7.2e-45  Score=315.67  Aligned_cols=181  Identities=27%  Similarity=0.461  Sum_probs=173.2

Q ss_pred             CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322         23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV   91 (261)
Q Consensus        23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~   91 (261)
                      +|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++
T Consensus         2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   76 (195)
T cd03759           2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIG-----DRLYIGLAGLATDVQTLAQKLRFRVNLYRLREERE   76 (195)
T ss_pred             CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeC-----CCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6999999999999999999999999887788899999999     99999987           8889999999999999


Q ss_pred             CCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecC-EEEEecChHHHHHHHHhhhhccccccc
Q psy10322         92 MSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN-FRAGGSSGALLQALLDNQVGIIQHSSK  170 (261)
Q Consensus        92 isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~  170 (261)
                      |+++.+|++|++++|++|.+||+|++||||||++++|+||++||+|++..++ ++|+|+|+.+++++||+.|        
T Consensus        77 ~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~--------  148 (195)
T cd03759          77 IKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW--------  148 (195)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc--------
Confidence            9999999999999999989999999999999988889999999999998877 9999999999999999976        


Q ss_pred             chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322        171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg  250 (261)
                                                              +++||.|||++++++||..+.+||+.++++++|++|+++|
T Consensus       149 ----------------------------------------~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g  188 (195)
T cd03759         149 ----------------------------------------RPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDK  188 (195)
T ss_pred             ----------------------------------------CCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence                                                    8999999999999999999999999999999999999999


Q ss_pred             EEEEee
Q psy10322        251 IKEYNF  256 (261)
Q Consensus       251 ~~~~~~  256 (261)
                      ++++++
T Consensus       189 ~~~~~~  194 (195)
T cd03759         189 VTTRTL  194 (195)
T ss_pred             EEEEec
Confidence            999886

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit

Probab=100.00  E-value=4.1e-43  Score=304.87  Aligned_cols=179  Identities=20%  Similarity=0.249  Sum_probs=167.7

Q ss_pred             CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH-hhhhhcCC
Q psy10322         23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ-MYLHEHNK   90 (261)
Q Consensus        23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~-~y~~~~g~   90 (261)
                      +|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+     +|++|+++           ++|.+++ .|.++++.
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~   75 (197)
T cd03760           1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVG-----DNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGH   75 (197)
T ss_pred             CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEec-----CcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999988899999999999999     99999886           7777876 46678899


Q ss_pred             cCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccc
Q psy10322         91 VMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHS  168 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  168 (261)
                      +|+++.+|+++++++|++|  +|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|      
T Consensus        76 ~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~------  149 (197)
T cd03760          76 SLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAW------  149 (197)
T ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhc------
Confidence            9999999999999999876  78999999999999767899999999999999999999999999999999986      


Q ss_pred             ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                                ++  +||.|||++++++||+.+.+||+.++++++|++|
T Consensus       150 ------------------------------------------~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii  187 (197)
T cd03760         150 ------------------------------------------EKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVV  187 (197)
T ss_pred             ------------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEE
Confidence                                                      66  9999999999999999999999999999999999


Q ss_pred             EcCCEEEE
Q psy10322        247 TKDGIKEY  254 (261)
Q Consensus       247 tkdg~~~~  254 (261)
                      +++|++++
T Consensus       188 ~~~g~~~~  195 (197)
T cd03760         188 TKEGVEIE  195 (197)
T ss_pred             CCCCEEeC
Confidence            99998754

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit

Probab=100.00  E-value=9.1e-43  Score=300.92  Aligned_cols=175  Identities=23%  Similarity=0.324  Sum_probs=168.2

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           ++|.+++.|++.++++|+
T Consensus         1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~   75 (188)
T cd03761           1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEIN-----PYLLGTMAGGAADCQYWERVLGRECRLYELRNKERIS   75 (188)
T ss_pred             CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEcc-----CcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            58999999999999999999999889899999999999     99999876           889999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.+|.+||+|++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 ~~~la~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~-----------  143 (188)
T cd03761          76 VAAASKLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY-----------  143 (188)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC-----------
Confidence            9999999999999999899999999999995 5699999999999999999999999999999999975           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||..+.+||+.+|++++|++|++||+++
T Consensus       144 -------------------------------------~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~  186 (188)
T cd03761         144 -------------------------------------RYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRK  186 (188)
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEE
Confidence                                                 8999999999999999999999999999999999999999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit

Probab=100.00  E-value=9.7e-42  Score=295.86  Aligned_cols=178  Identities=21%  Similarity=0.326  Sum_probs=167.3

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+|+||||||+|+|.++|.++.+++++|||+|+     +|++++++           +++.+++.|++.++++++
T Consensus         2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~   76 (193)
T cd03758           2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLS-----DHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELS   76 (193)
T ss_pred             ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeC-----CCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            69999999999999999999999889999999999999     99999886           888899999999999999


Q ss_pred             HHHHHHHHHHHHhcc-cc-CCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322         94 TTSLAKMISIMMYGK-RF-FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQ  171 (261)
Q Consensus        94 v~~lA~~Is~~ly~~-r~-~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~  171 (261)
                      ++.+++++++++|.+ |. +||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|         
T Consensus        77 ~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~---------  147 (193)
T cd03758          77 PKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYY---------  147 (193)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhcc---------
Confidence            999999999998643 33 6999999999999777899999999999999999999999999999999976         


Q ss_pred             hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322        172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI  251 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~  251 (261)
                                                             +++||.|||++++.+||+.+.+||+.++++++|++|+++|+
T Consensus       148 ---------------------------------------~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~  188 (193)
T cd03758         148 ---------------------------------------KPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGI  188 (193)
T ss_pred             ---------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCe
Confidence                                                   78999999999999999999999999999999999999999


Q ss_pred             EEEe
Q psy10322        252 KEYN  255 (261)
Q Consensus       252 ~~~~  255 (261)
                      ++..
T Consensus       189 ~~~~  192 (193)
T cd03758         189 RDLE  192 (193)
T ss_pred             EeCC
Confidence            7643

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit

Probab=100.00  E-value=1.4e-41  Score=291.51  Aligned_cols=174  Identities=29%  Similarity=0.503  Sum_probs=166.7

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      |+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++++++           +++.+++.|++.+++++
T Consensus         1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~   75 (185)
T TIGR03634         1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQID-----DYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPM   75 (185)
T ss_pred             CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcC-----CCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            789999999999999999999999999999999999999     99999886           77788999999999999


Q ss_pred             CHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccch
Q psy10322         93 STTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQM  172 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~  172 (261)
                      +++.+|+++++++|.++++||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|          
T Consensus        76 ~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~----------  144 (185)
T TIGR03634        76 SVKALATLLSNILNSNRFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY----------  144 (185)
T ss_pred             CHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC----------
Confidence            999999999999999999999999999999975 499999999999999999999999999999999975          


Q ss_pred             hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322        173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI  251 (261)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~  251 (261)
                                                            +++||.+||++++++||..+.+||+.++++++|++|+++|+
T Consensus       145 --------------------------------------~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~  185 (185)
T TIGR03634       145 --------------------------------------REDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV  185 (185)
T ss_pred             --------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence                                                  89999999999999999999999999999999999999985

This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=303.14  Aligned_cols=187  Identities=28%  Similarity=0.415  Sum_probs=175.3

Q ss_pred             cccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH
Q psy10322         14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ   82 (261)
Q Consensus        14 ~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~   82 (261)
                      .+.+.+....|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     ||++|+++           +++.+++
T Consensus        20 e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~-----d~i~~~~sG~~aDa~~lv~~~r~~a~   94 (236)
T COG0638          20 EYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKID-----DHIGMAIAGLAADAQVLVRYARAEAQ   94 (236)
T ss_pred             HHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEec-----CCEEEEeccCcHhHHHHHHHHHHHHH
Confidence            3456677777899999999999999999999999999999999999999     99999987           7888999


Q ss_pred             hhhhhcCCcCCHHHHHHHHHHHHhcccc--CCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322         83 MYLHEHNKVMSTTSLAKMISIMMYGKRF--FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN  160 (261)
Q Consensus        83 ~y~~~~g~~isv~~lA~~Is~~ly~~r~--~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~  160 (261)
                      .|++.++++|+++.+|+++++++|+++.  |||+|++||||+|+ ++|+||++||+|++.++++.|+|+|+..++++||+
T Consensus        95 ~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~  173 (236)
T COG0638          95 LYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEK  173 (236)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHh
Confidence            9999999999999999999999999887  99999999999998 88999999999999999999999999999999999


Q ss_pred             hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322        161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG  240 (261)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~  240 (261)
                      +|                                                +++|++|||++++++||.++.+||..++++
T Consensus       174 ~y------------------------------------------------~~~m~~eeai~la~~al~~a~~rd~~s~~~  205 (236)
T COG0638         174 EY------------------------------------------------REDLSLEEAIELAVKALRAAIERDAASGGG  205 (236)
T ss_pred             hc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccccCCCC
Confidence            87                                                789999999999999999999999989999


Q ss_pred             EEEEEEEc-CCEEEE
Q psy10322        241 VHLCAITK-DGIKEY  254 (261)
Q Consensus       241 v~i~~itk-dg~~~~  254 (261)
                      ++|++|++ +|.+..
T Consensus       206 ~~v~vi~~~~~~~~~  220 (236)
T COG0638         206 IEVAVITKDEGFRKL  220 (236)
T ss_pred             eEEEEEEcCCCeEEc
Confidence            99999998 566553

>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit

Probab=100.00  E-value=6.7e-41  Score=288.29  Aligned_cols=176  Identities=26%  Similarity=0.304  Sum_probs=167.3

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++++++
T Consensus         1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~   75 (188)
T cd03762           1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLH-----DRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPL   75 (188)
T ss_pred             CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEcc-----CCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence            58999999999999999999999888889999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.+| +||+|++||||||++++|+||++||.|++.+++++++|+|+.+++++||+.|           
T Consensus        76 ~~~~a~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~-----------  143 (188)
T cd03762          76 VKTAASLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY-----------  143 (188)
T ss_pred             HHHHHHHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC-----------
Confidence            9999999999999886 7899999999999766799999999999999999999999999999999975           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||+.+.+||+.+|++++|++|+++|+++
T Consensus       144 -------------------------------------~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~  186 (188)
T cd03762         144 -------------------------------------KPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER  186 (188)
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence                                                 8999999999999999999999999999999999999999976


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      +
T Consensus       187 ~  187 (188)
T cd03762         187 K  187 (188)
T ss_pred             e
Confidence            4

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit

Probab=100.00  E-value=6.9e-41  Score=288.21  Aligned_cols=175  Identities=30%  Similarity=0.485  Sum_probs=167.2

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++++++           +++.+++.|++.++++++
T Consensus         1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (188)
T cd03764           1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQID-----DKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMS   75 (188)
T ss_pred             CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEcc-----CCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            58999999999999999999999999999999999999     99999876           778888999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+++++++++|.+|++||+|++||||||+ ++|+||++||.|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 ~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~-----------  143 (188)
T cd03764          76 IKALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY-----------  143 (188)
T ss_pred             HHHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC-----------
Confidence            9999999999999999999999999999996 6799999999999999999999999999999999975           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++|+.|||++++++||+.+.+||+.++++++|++|++||+++
T Consensus       144 -------------------------------------~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~  186 (188)
T cd03764         144 -------------------------------------KEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKE  186 (188)
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence                                                 8999999999999999999999999999999999999999764

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00488 Proteasome subunit beta type-5; Provisional

Probab=100.00  E-value=7e-41  Score=301.84  Aligned_cols=179  Identities=23%  Similarity=0.312  Sum_probs=169.8

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      .+|+|+|||+|+||||||+|+|.++|.++.+++.+|||+|+     +|++++++           ++|.+++.|++++|+
T Consensus        37 ~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~  111 (247)
T PTZ00488         37 AHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEIN-----PTLLGTMAGGAADCSFWERELAMQCRLYELRNGE  111 (247)
T ss_pred             CCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcC-----CCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            46999999999999999999999999999999999999999     99999876           888999999999999


Q ss_pred             cCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322         91 VMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK  170 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~  170 (261)
                      +|+++.+|++|++++|.+|..|+.+++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|        
T Consensus       112 ~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~--------  182 (247)
T PTZ00488        112 LISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGF--------  182 (247)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcC--------
Confidence            999999999999999999877888889999999655 99999999999999999999999999999999976        


Q ss_pred             chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322        171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg  250 (261)
                                                              +++||.|||++++++||..+.+||+.+|++++|++|+++|
T Consensus       183 ----------------------------------------k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g  222 (247)
T PTZ00488        183 ----------------------------------------KWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG  222 (247)
T ss_pred             ----------------------------------------cCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc
Confidence                                                    8899999999999999999999999999999999999999


Q ss_pred             EEEE
Q psy10322        251 IKEY  254 (261)
Q Consensus       251 ~~~~  254 (261)
                      ++..
T Consensus       223 ~~~l  226 (247)
T PTZ00488        223 WKKI  226 (247)
T ss_pred             cEEC
Confidence            7654

>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit

Probab=100.00  E-value=3.4e-40  Score=284.62  Aligned_cols=175  Identities=22%  Similarity=0.285  Sum_probs=165.8

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+|+||||||+|+|.++|.++..++.+|||+|+     +|++|+.+           +++.+++.|+++++++++
T Consensus         1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (189)
T cd03763           1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIA-----PNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPR   75 (189)
T ss_pred             CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEec-----CCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999999999889899999999999     99999876           788899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|++|++++|.++ .||+|++||||||++| |+||++||.|++.+++++|+|+++.+++++||+.|           
T Consensus        76 ~~~~a~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~-----------  142 (189)
T cd03763          76 VVTALTMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY-----------  142 (189)
T ss_pred             HHHHHHHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc-----------
Confidence            9999999999998764 5999999999999654 99999999999999999999999999999999976           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.+||++++++||+.+.+||+.+|++++|++|++||+++
T Consensus       143 -------------------------------------~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~  185 (189)
T cd03763         143 -------------------------------------KPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEY  185 (189)
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEE
Confidence                                                 8999999999999999999999999999999999999999986


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       186 ~  186 (189)
T cd03763         186 L  186 (189)
T ss_pred             e
Confidence            4

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01912 proteasome_beta proteasome beta subunit

Probab=100.00  E-value=1.3e-39  Score=279.37  Aligned_cols=177  Identities=35%  Similarity=0.549  Sum_probs=168.5

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++..++.+|||+|+     ++++++++           +++.+++.|++.++++++
T Consensus         1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (189)
T cd01912           1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKIS-----DNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELS   75 (189)
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEcc-----CCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999999999888789999999999     99999876           778899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+++++++++|.+|.+||+|++||||+|++++|+||++||.|++.+++++|+|+++.+++++||+.|           
T Consensus        76 ~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~-----------  144 (189)
T cd01912          76 VKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY-----------  144 (189)
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc-----------
Confidence            999999999999998889999999999999867899999999999999999999999999999999976           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||..+.+||+.++++++|++|+++|+++
T Consensus       145 -------------------------------------~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~  187 (189)
T cd01912         145 -------------------------------------KPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEE  187 (189)
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence                                                 8999999999999999999999999999999999999999875


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       188 ~  188 (189)
T cd01912         188 L  188 (189)
T ss_pred             c
Confidence            4

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type

Probab=100.00  E-value=2.7e-39  Score=285.92  Aligned_cols=179  Identities=23%  Similarity=0.341  Sum_probs=165.2

Q ss_pred             CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322         23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV   91 (261)
Q Consensus        23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~   91 (261)
                      +|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           ++|.+++.|+++++++
T Consensus         1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~   75 (219)
T TIGR03690         1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTD-----EYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVP   75 (219)
T ss_pred             CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcC-----CcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4899999999999999999999999999999999999999     99999876           8888999999999999


Q ss_pred             CCHHHHHHHHHHHHhcc---ccCCcceEEEEEEEcCC-CCeEEEEECCCC-ceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322         92 MSTTSLAKMISIMMYGK---RFFPYYTSTIIAGLDPE-GKGCVYSYDPIG-HTERANFRAGGSSGALLQALLDNQVGIIQ  166 (261)
Q Consensus        92 isv~~lA~~Is~~ly~~---r~~P~~v~~IVaG~D~~-g~p~Ly~iDp~G-s~~~~~~~a~G~g~~~~~~~Le~~~~~~~  166 (261)
                      |+++.+|++|++++|.+   ++|||+|++||||||++ ++|+||++||+| ++..++++|+|+|+.+++++||+.|    
T Consensus        76 i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~----  151 (219)
T TIGR03690        76 LTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY----  151 (219)
T ss_pred             CCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC----
Confidence            99999999999999764   37899999999999964 779999999999 5777899999999999999999875    


Q ss_pred             ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc------
Q psy10322        167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG------  240 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~------  240 (261)
                                                                  +++||.|||++++++||..+.+||..+|+.      
T Consensus       152 --------------------------------------------~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~  187 (219)
T TIGR03690       152 --------------------------------------------SPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGI  187 (219)
T ss_pred             --------------------------------------------CCCcCHHHHHHHHHHHHHHHHhcccccCCccccccc
Confidence                                                        889999999999999999999999877775      


Q ss_pred             -EEEEEEEcCCEEEE
Q psy10322        241 -VHLCAITKDGIKEY  254 (261)
Q Consensus       241 -v~i~~itkdg~~~~  254 (261)
                       ++|++|+++|++..
T Consensus       188 ~~ei~ii~~~g~~~l  202 (219)
T TIGR03690       188 YPTVVVITADGARRV  202 (219)
T ss_pred             ccEEEEEccCceEEc
Confidence             39999999998753

Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.

>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2

Probab=100.00  E-value=4.2e-38  Score=279.36  Aligned_cols=182  Identities=18%  Similarity=0.237  Sum_probs=165.2

Q ss_pred             ccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHh
Q psy10322         15 HHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQM   83 (261)
Q Consensus        15 ~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~   83 (261)
                      ..+.+. ++|+|+|||+++||||||+|+|.+. .++.+++.+|||+|+     +|++|+++           ++|.+++.
T Consensus        19 yA~~av-~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~   91 (227)
T cd03750          19 YALAAV-SSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQIT-----PHIGMVYSGMGPDFRVLVKKARKIAQQ   91 (227)
T ss_pred             HHHHHH-HcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEc-----CCEEEEEeEcHHhHHHHHHHHHHHHHH
Confidence            334454 5799999999999999999999984 577888999999999     99999886           88889999


Q ss_pred             hhhhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHH
Q psy10322         84 YLHEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLD  159 (261)
Q Consensus        84 y~~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le  159 (261)
                      |++.+|++|+++.+|++|++++  |.++  .|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||
T Consensus        92 ~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le  170 (227)
T cd03750          92 YYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLE  170 (227)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHH
Confidence            9999999999999999999988  4444  6899999999999965 599999999999999999999999999999999


Q ss_pred             hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322        160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD  239 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~  239 (261)
                      +.|                                                +++||.|||++++++||..+.+||+ +++
T Consensus       171 ~~~------------------------------------------------~~~ms~eeai~l~~~~l~~~~~~~l-~~~  201 (227)
T cd03750         171 KRY------------------------------------------------NEDLELEDAIHTAILTLKEGFEGQM-TEK  201 (227)
T ss_pred             hhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHhcccC-CCC
Confidence            986                                                7899999999999999999999986 799


Q ss_pred             cEEEEEEEcC-CEEE
Q psy10322        240 GVHLCAITKD-GIKE  253 (261)
Q Consensus       240 ~v~i~~itkd-g~~~  253 (261)
                      +++|++|+++ |.+.
T Consensus       202 ~iev~iv~~~~~~~~  216 (227)
T cd03750         202 NIEIGICGETKGFRL  216 (227)
T ss_pred             cEEEEEEECCCCEEE
Confidence            9999999986 6664

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PTZ00246 proteasome subunit alpha; Provisional

Probab=100.00  E-value=4.1e-38  Score=283.72  Aligned_cols=177  Identities=17%  Similarity=0.183  Sum_probs=164.3

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+     +|++|+++           .+|.+++.|++.++
T Consensus        28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~  102 (253)
T PTZ00246         28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKID-----SHIFCAVAGLTADANILINQCRLYAQRYRYTYG  102 (253)
T ss_pred             HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEec-----CCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence            367999999999999999999999999888778899999999     99999876           77778888999999


Q ss_pred             CcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .+++++.+++.++++++.  +  ++|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|   
T Consensus       103 ~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~---  179 (253)
T PTZ00246        103 EPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEW---  179 (253)
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhc---
Confidence            999999999999988643  2  478999999999999767799999999999999999999999999999999976   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++|+.|||++++++||..+.+||..++++++|++
T Consensus       180 ---------------------------------------------~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~i  214 (253)
T PTZ00246        180 ---------------------------------------------KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGI  214 (253)
T ss_pred             ---------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Confidence                                                         88999999999999999999999999999999999


Q ss_pred             EEcCC
Q psy10322        246 ITKDG  250 (261)
Q Consensus       246 itkdg  250 (261)
                      |+++|
T Consensus       215 i~~~~  219 (253)
T PTZ00246        215 LSHGE  219 (253)
T ss_pred             EecCC
Confidence            99986

>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit

Probab=100.00  E-value=1.6e-37  Score=278.47  Aligned_cols=177  Identities=15%  Similarity=0.164  Sum_probs=157.4

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCC-CCeEEEehH-----------HHHHHHHhhhhhcCC-c
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRP-TYNFLMIFT-----------ITILPFQMYLHEHNK-V   91 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~-~d~i~~~~s-----------~lr~~~~~y~~~~g~-~   91 (261)
                      |-+|||+++||||||+|+|.+.+.... ++.+|||+|+  .| .+|++|+.+           ++|.+++.|++++|+ +
T Consensus         1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~--~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~   77 (236)
T cd03765           1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFS--VPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNA   77 (236)
T ss_pred             CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEec--CCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCC
Confidence            358999999999999999998885444 4799999994  11 157999876           889999999999999 8


Q ss_pred             CCHHHHHHHHHHHHhc----cc------cCCcceEEEEEEEcCCCCeEEEEECCCCceeec----CEEEEecChHHHHHH
Q psy10322         92 MSTTSLAKMISIMMYG----KR------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA----NFRAGGSSGALLQAL  157 (261)
Q Consensus        92 isv~~lA~~Is~~ly~----~r------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~----~~~a~G~g~~~~~~~  157 (261)
                      |+++.+|+++++++++    +.      .|||+|++||||||++++|+||++||+|++.++    +|.|+|. +.+++++
T Consensus        78 ~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~  156 (236)
T cd03765          78 PTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPI  156 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHH
Confidence            9999999999998654    12      479999999999997667999999999999998    5689996 6999999


Q ss_pred             HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322        158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT  237 (261)
Q Consensus       158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~  237 (261)
                      ||++|                                                +++||+|||++++++||.++++||..+
T Consensus       157 Lek~y------------------------------------------------k~~ms~eeai~la~~al~~a~~rd~~s  188 (236)
T cd03765         157 LDRVI------------------------------------------------TPDTSLEDAAKCALVSMDSTMRSNLSV  188 (236)
T ss_pred             HHHhc------------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            99987                                                889999999999999999999999999


Q ss_pred             CCcEEEEEEEcCCEEE
Q psy10322        238 GDGVHLCAITKDGIKE  253 (261)
Q Consensus       238 g~~v~i~~itkdg~~~  253 (261)
                      |++|+|++|+|+|+++
T Consensus       189 g~~iev~vI~k~G~~~  204 (236)
T cd03765         189 GPPLDLLVYERDSLQV  204 (236)
T ss_pred             CCCEEEEEEECCCeee
Confidence            9999999999999987

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4

Probab=100.00  E-value=8.7e-38  Score=274.69  Aligned_cols=177  Identities=17%  Similarity=0.243  Sum_probs=162.9

Q ss_pred             cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322         16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY   84 (261)
Q Consensus        16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y   84 (261)
                      .+++. ++|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+     +|++|+++           ++|.+++.|
T Consensus        22 a~~a~-~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~   95 (213)
T cd03752          22 AMEAI-SHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKID-----DHIACAVAGITSDANILINYARLIAQRY   95 (213)
T ss_pred             HHHHH-hcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEec-----CCEEEEEecChHhHHHHHHHHHHHHHHH
Confidence            34454 67999999999999999999999999877778999999999     99999886           889999999


Q ss_pred             hhhcCCcCCHHHHHHHHHHHH--hcc--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322         85 LHEHNKVMSTTSLAKMISIMM--YGK--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN  160 (261)
Q Consensus        85 ~~~~g~~isv~~lA~~Is~~l--y~~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~  160 (261)
                      +++++++|+++.+|++|+.++  |.+  +.|||+|++||||||++.+|+||++||+|++.+++++|+|+++.+++++||+
T Consensus        96 ~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~  175 (213)
T cd03752          96 LYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQ  175 (213)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHH
Confidence            999999999999999999876  332  4689999999999997667999999999999999999999999999999999


Q ss_pred             hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322        161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG  240 (261)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~  240 (261)
                      .|                                                +++||.|||++++++||..+.+||..++++
T Consensus       176 ~y------------------------------------------------~~~ms~eea~~l~~~al~~~~~r~~~~~~~  207 (213)
T cd03752         176 DY------------------------------------------------KDDMTLEEALALAVKVLSKTMDSTKLTSEK  207 (213)
T ss_pred             hc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccCCCCCc
Confidence            86                                                899999999999999999999999999999


Q ss_pred             EEEEEE
Q psy10322        241 VHLCAI  246 (261)
Q Consensus       241 v~i~~i  246 (261)
                      ++|++|
T Consensus       208 ~ei~~~  213 (213)
T cd03752         208 LEFATL  213 (213)
T ss_pred             EEEEEC
Confidence            999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit

Probab=100.00  E-value=2.3e-37  Score=273.68  Aligned_cols=183  Identities=21%  Similarity=0.257  Sum_probs=164.7

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      +++. ++|+|+|||+++||||||+|+|.+. .++..++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus        23 ~~av-~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~   95 (224)
T TIGR03633        23 REAV-KRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKID-----DHIGAATSGLVADARVLIDRARIEAQINR   95 (224)
T ss_pred             HHHH-HcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEEC-----CCEEEEEeecHHhHHHHHHHHHHHHHHHH
Confidence            4454 5799999999999999999999985 466678999999999     99999876           7788889999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ  161 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~  161 (261)
                      +.++++++++.+|++++++++.  +  +.|||+|++||||+| +++|+||++||.|++.+++++|+|+|+.+++++||+.
T Consensus        96 ~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d-~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~  174 (224)
T TIGR03633        96 LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD-DGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKE  174 (224)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe-CCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHh
Confidence            9999999999999999998743  3  367999999999999 4679999999999999999999999999999999997


Q ss_pred             hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322        162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV  241 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v  241 (261)
                      |                                                +++|+.|||++++++||..+.+ |+.+++++
T Consensus       175 ~------------------------------------------------~~~~~~eeai~l~~~al~~~~~-d~~~~~~i  205 (224)
T TIGR03633       175 Y------------------------------------------------REDLSLDEAIELALKALYSAVE-DKLTPENV  205 (224)
T ss_pred             c------------------------------------------------cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcE
Confidence            5                                                8999999999999999999888 89999999


Q ss_pred             EEEEEEcCCEEEEee
Q psy10322        242 HLCAITKDGIKEYNF  256 (261)
Q Consensus       242 ~i~~itkdg~~~~~~  256 (261)
                      +|++|+++|...+.+
T Consensus       206 ~i~ii~~~g~~~~~~  220 (224)
T TIGR03633       206 EVAYITVEDKKFRKL  220 (224)
T ss_pred             EEEEEEcCCCcEEEC
Confidence            999999999544433

This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.

>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6

Probab=100.00  E-value=1.3e-37  Score=274.44  Aligned_cols=179  Identities=20%  Similarity=0.273  Sum_probs=161.1

Q ss_pred             ccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHH
Q psy10322         13 IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPF   81 (261)
Q Consensus        13 ~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~   81 (261)
                      .+..++++.++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+     +|++|+++           ++|.++
T Consensus        18 veya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~   91 (215)
T cd03754          18 VEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRIT-----DEIGCVMTGMIADSRSQVQRARYEA   91 (215)
T ss_pred             HHhHHHHHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEc-----CCEEEEEEechhhHHHHHHHHHHHH
Confidence            45556777667889999999999999999999876 45556889999999     99999876           889999


Q ss_pred             HhhhhhcCCcCCHHHHHHHHHHH--Hhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322         82 QMYLHEHNKVMSTTSLAKMISIM--MYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL  157 (261)
Q Consensus        82 ~~y~~~~g~~isv~~lA~~Is~~--ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~  157 (261)
                      +.|+++++++|+++.+|++++++  +|.++  .|||+|++|+||||++++|+||++||+|++.+++++|+|+|+.+++++
T Consensus        92 ~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~  171 (215)
T cd03754          92 AEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNF  171 (215)
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHH
Confidence            99999999999999999999997  56544  579999999999998777999999999999999999999999999999


Q ss_pred             HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CC--CHHHHHHHHHHHHHHHHhc
Q psy10322        158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PV--PLEKAISVVKDAFTAAAER  233 (261)
Q Consensus       158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--s~eea~~l~~~al~~~~~r  233 (261)
                      ||++|                                                ++  +|  |.|||++++++||..+.+|
T Consensus       172 Le~~~------------------------------------------------~~~~~~~~s~eeai~l~~~al~~~~~r  203 (215)
T cd03754         172 LEKKL------------------------------------------------KKKPDLIESYEETVELAISCLQTVLST  203 (215)
T ss_pred             HHHHh------------------------------------------------ccccccCCCHHHHHHHHHHHHHHHhcc
Confidence            99987                                                34  57  9999999999999999999


Q ss_pred             ccCCCCcEEEEEE
Q psy10322        234 DIYTGDGVHLCAI  246 (261)
Q Consensus       234 d~~~g~~v~i~~i  246 (261)
                      |.. ++.++|++|
T Consensus       204 d~~-~~~~ei~~~  215 (215)
T cd03754         204 DFK-ATEIEVGVV  215 (215)
T ss_pred             cCC-CCcEEEEEC
Confidence            976 999999875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins

Probab=100.00  E-value=4.1e-37  Score=262.79  Aligned_cols=173  Identities=32%  Similarity=0.460  Sum_probs=158.1

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCC-cCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhc
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTRE-QSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEH   88 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~-~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~   88 (261)
                      +++|+|+|||+++||||||+|+|.++|..+..++ .+|||+|+     +|++++++           +++.+++.|++.+
T Consensus         1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~   75 (190)
T PF00227_consen    1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKIN-----DNIIIGFSGLTADFQYLIRRLREEAQEYRFSY   75 (190)
T ss_dssp             HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeecc-----CcceeeccccccchHHHHhhhcccchhhhhcc
Confidence            3589999999999999999999999988876555 69999999     99999876           8888999999999


Q ss_pred             CCcCCHHHHHHHHHHH----HhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeec-CEEEEecChHHHHHHHHhhhh
Q psy10322         89 NKVMSTTSLAKMISIM----MYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA-NFRAGGSSGALLQALLDNQVG  163 (261)
Q Consensus        89 g~~isv~~lA~~Is~~----ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~-~~~a~G~g~~~~~~~Le~~~~  163 (261)
                      +.+++++.+++.++++    ++..+++|++|++|+||||++++|+||.+||.|++.++ ++.|+|+|+.+++++||+.| 
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~-  154 (190)
T PF00227_consen   76 GRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY-  154 (190)
T ss_dssp             SSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH-
T ss_pred             CccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc-
Confidence            9999999666655554    45556899999999999998888999999999999999 69999999999999999987 


Q ss_pred             cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322        164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL  243 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i  243 (261)
                                                                     +++||.|||++++++||+.+.+||..++++++|
T Consensus       155 -----------------------------------------------~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v  187 (190)
T PF00227_consen  155 -----------------------------------------------KPDLSLEEAIELALKALKEAIDRDILSGDNIEV  187 (190)
T ss_dssp             -----------------------------------------------TTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEE
T ss_pred             -----------------------------------------------cCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEE
Confidence                                                           899999999999999999999999999999999


Q ss_pred             EEE
Q psy10322        244 CAI  246 (261)
Q Consensus       244 ~~i  246 (261)
                      ++|
T Consensus       188 ~vi  190 (190)
T PF00227_consen  188 AVI  190 (190)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            987

They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....

>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7

Probab=100.00  E-value=4.6e-37  Score=269.04  Aligned_cols=172  Identities=19%  Similarity=0.275  Sum_probs=157.5

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      ++++ ++|+|+|||+++||||||+|+|.+.. ++..++.+|||+|+     +|++|+++           ++|.+++.|+
T Consensus        21 ~~av-~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   93 (207)
T cd03755          21 QEAV-RKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLD-----DHVCLAFAGLTADARVLINRARLECQSHR   93 (207)
T ss_pred             HHHH-HcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEEC-----CCEEEEEecchhhHHHHHHHHHHHHHHHH
Confidence            3444 57999999999999999999997765 56677899999999     99999886           8889999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322         86 HEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ  161 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~  161 (261)
                      ++++++|+++.+|+++++++  |.+|  .|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus        94 ~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~  173 (207)
T cd03755          94 LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKN  173 (207)
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhh
Confidence            99999999999999999998  5554  6899999999999987789999999999999999999999999999999998


Q ss_pred             hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322        162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV  241 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v  241 (261)
                      |                                                +++|+.|||++++++||..+.+   .+++++
T Consensus       174 ~------------------------------------------------~~~ms~eeai~l~~~~l~~~~~---~~~~~~  202 (207)
T cd03755         174 Y------------------------------------------------KEEMTRDDTIKLAIKALLEVVQ---SGSKNI  202 (207)
T ss_pred             c------------------------------------------------cCCCCHHHHHHHHHHHHHHHhC---CCCCeE
Confidence            6                                                8999999999999999999997   678999


Q ss_pred             EEEEE
Q psy10322        242 HLCAI  246 (261)
Q Consensus       242 ~i~~i  246 (261)
                      ||++|
T Consensus       203 e~~~~  207 (207)
T cd03755         203 ELAVM  207 (207)
T ss_pred             EEEEC
Confidence            99985

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd01911 proteasome_alpha proteasome alpha subunit

Probab=100.00  E-value=8.2e-37  Score=267.36  Aligned_cols=174  Identities=21%  Similarity=0.286  Sum_probs=159.6

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      +.+. ++|+|+|||+|+||||||+|+|.+.+ ++..++.+|||+|+     +|++++.+           .++.+++.|+
T Consensus        21 ~~~~-~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~   93 (209)
T cd01911          21 LEAV-KNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKID-----DHIGCAVAGLTADARVLVNRARVEAQNYR   93 (209)
T ss_pred             HHHH-HcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEec-----CCeEEEeccCcHhHHHHHHHHHHHHHHHH
Confidence            4454 57999999999999999999999976 55668999999999     99999886           7788888999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHh--cc--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322         86 HEHNKVMSTTSLAKMISIMMY--GK--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ  161 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly--~~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~  161 (261)
                      +++|++|+++.+|++++++++  .+  +.|||+|++||||||++++|+||++||.|++.+++++|+|+|+.+++++||+.
T Consensus        94 ~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~  173 (209)
T cd01911          94 YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKR  173 (209)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHh
Confidence            999999999999999999884  33  36799999999999987789999999999999999999999999999999997


Q ss_pred             hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322        162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV  241 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v  241 (261)
                      |                                                +++|+.|||++++++||..+.+||+ +++.+
T Consensus       174 ~------------------------------------------------~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~  204 (209)
T cd01911         174 Y------------------------------------------------KKDLTLEEAIKLALKALKEVLEEDK-KAKNI  204 (209)
T ss_pred             c------------------------------------------------ccCCCHHHHHHHHHHHHHHHHhccC-CCCcE
Confidence            5                                                8999999999999999999999999 99999


Q ss_pred             EEEEE
Q psy10322        242 HLCAI  246 (261)
Q Consensus       242 ~i~~i  246 (261)
                      +|+++
T Consensus       205 ~i~i~  209 (209)
T cd01911         205 EIAVV  209 (209)
T ss_pred             EEEEC
Confidence            99875

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.

>PRK03996 proteasome subunit alpha; Provisional

Probab=100.00  E-value=1.3e-36  Score=271.77  Aligned_cols=179  Identities=21%  Similarity=0.200  Sum_probs=162.0

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+. .++..++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        33 v~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  106 (241)
T PRK03996         33 VKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKID-----DHIGAASAGLVADARVLIDRARVEAQINRLTYG  106 (241)
T ss_pred             HHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEc-----CCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999985 466678999999999     99999886           77889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++.+|++++++++.+    +.|||+|++||||||.+ +|+||++||.|++.+++++|+|+|+..++++||+.|   
T Consensus       107 ~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~---  182 (241)
T PRK03996        107 EPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNY---  182 (241)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhc---
Confidence            9999999999999988533    36899999999999964 599999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++|+.|||++++++||..+.++ ..++++++|++
T Consensus       183 ---------------------------------------------~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~i  216 (241)
T PRK03996        183 ---------------------------------------------KEDLSLEEAIELALKALAKANEG-KLDPENVEIAY  216 (241)
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEE
Confidence                                                         89999999999999999999886 46799999999


Q ss_pred             EEcCCEEEEe
Q psy10322        246 ITKDGIKEYN  255 (261)
Q Consensus       246 itkdg~~~~~  255 (261)
                      |+++|...+.
T Consensus       217 i~~~~~~~~~  226 (241)
T PRK03996        217 IDVETKKFRK  226 (241)
T ss_pred             EECCCCcEEE
Confidence            9999864443

>cd01906 proteasome_protease_HslV proteasome_protease_HslV

Probab=100.00  E-value=1.8e-36  Score=257.14  Aligned_cols=169  Identities=27%  Similarity=0.397  Sum_probs=160.1

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.+.+..+..++.+|||+|+     ++++++.+           .++.++..|+++++++++
T Consensus         1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (182)
T cd01906           1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKID-----DHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIP   75 (182)
T ss_pred             CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEEC-----CCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            58999999999999999999999887789999999999     99999876           788899999999999999


Q ss_pred             HHHHHHHHHHHHhcccc--CCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322         94 TTSLAKMISIMMYGKRF--FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQ  171 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~--~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~  171 (261)
                      ++.+++++++++|.++.  +||+|++||||||.+++|+||.+||.|++.+++++|+|+++.+++++||+.|         
T Consensus        76 ~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~---------  146 (182)
T cd01906          76 VEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLY---------  146 (182)
T ss_pred             HHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHc---------
Confidence            99999999999998875  9999999999999867899999999999999999999999999999999986         


Q ss_pred             hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                             +++||.|||++++++||..+.+||..+++.++|++|
T Consensus       147 ---------------------------------------~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii  182 (182)
T cd01906         147 ---------------------------------------KPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI  182 (182)
T ss_pred             ---------------------------------------cCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence                                                   789999999999999999999999999999999875

This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo

>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal

Probab=100.00  E-value=1.7e-36  Score=265.89  Aligned_cols=171  Identities=20%  Similarity=0.256  Sum_probs=157.5

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        25 v~~G~t~igik~~dgvvla~d~~~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~   98 (211)
T cd03756          25 VKRGTTALGIKCKEGVVLAVDKRITSK-LVEPESIEKIYKID-----DHVGAATSGLVADARVLIDRARVEAQIHRLTYG   98 (211)
T ss_pred             HHcCCCEEEEEECCEEEEEEeccCCCc-ccCCCccceEEEEc-----CCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            367999999999999999999999754 56678999999999     99999876           78889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++.+|++++++++.  +  +.|||+|++||||||+ ++|+||++||.|++.+++++|+|+|+.+++++||+.|   
T Consensus        99 ~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~---  174 (211)
T cd03756          99 EPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEY---  174 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhc---
Confidence            999999999999998744  3  4689999999999996 4699999999999999999999999999999999975   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++|++|||++++++||..+.++|. ++++++|++
T Consensus       175 ---------------------------------------------~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~i  208 (211)
T cd03756         175 ---------------------------------------------KEDMSLEEAIELALKALYAALEENE-TPENVEIAY  208 (211)
T ss_pred             ---------------------------------------------cCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEE
Confidence                                                         8999999999999999999999887 899999999


Q ss_pred             EE
Q psy10322        246 IT  247 (261)
Q Consensus       246 it  247 (261)
                      |+
T Consensus       209 i~  210 (211)
T cd03756         209 VT  210 (211)
T ss_pred             Ee
Confidence            97

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1

Probab=100.00  E-value=1.9e-36  Score=266.16  Aligned_cols=178  Identities=15%  Similarity=0.149  Sum_probs=159.1

Q ss_pred             cccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH
Q psy10322         14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ   82 (261)
Q Consensus        14 ~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~   82 (261)
                      +..+++. ++|+|+|||+++||||||+|+|.+.+   ..++.+|||+|+     +|++|+++           +++.+++
T Consensus        18 eya~~av-~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~   88 (211)
T cd03749          18 EYAMEAV-KQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVD-----DHIGIAIAGLTADARVLSRYMRQECL   88 (211)
T ss_pred             HHHHHHH-hcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeC-----CCEEEEEEeChHhHHHHHHHHHHHHH
Confidence            3445565 57999999999999999999998776   245779999999     99999886           8899999


Q ss_pred             hhhhhcCCcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHH
Q psy10322         83 MYLHEHNKVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALL  158 (261)
Q Consensus        83 ~y~~~~g~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~L  158 (261)
                      .|+++++++|+++.+|++++++++.  +  +.|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++|
T Consensus        89 ~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~L  167 (211)
T cd03749          89 NYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYL  167 (211)
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHH
Confidence            9999999999999999999998754  2  46899999999999965 59999999999999999999999999999999


Q ss_pred             HhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-CC
Q psy10322        159 DNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDI-YT  237 (261)
Q Consensus       159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~-~~  237 (261)
                      |++|                                       +       ++++||.|||+++++++|+.++++|. .+
T Consensus       168 e~~~---------------------------------------~-------~~~~ms~ee~i~~~~~~l~~~~~~~~~~~  201 (211)
T cd03749         168 ERHF---------------------------------------E-------EFEDCSLEELIKHALRALRETLPGEQELT  201 (211)
T ss_pred             HHhh---------------------------------------c-------cccCCCHHHHHHHHHHHHHHHhccCCCCC
Confidence            9987                                       0       03699999999999999999999997 88


Q ss_pred             CCcEEEEEEE
Q psy10322        238 GDGVHLCAIT  247 (261)
Q Consensus       238 g~~v~i~~it  247 (261)
                      +++|||++|+
T Consensus       202 ~~~iei~ii~  211 (211)
T cd03749         202 IKNVSIAIVG  211 (211)
T ss_pred             CCcEEEEEEC
Confidence            9999999984

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>KOG0180|consensus

Probab=100.00  E-value=1.5e-36  Score=256.74  Aligned_cols=191  Identities=27%  Similarity=0.420  Sum_probs=182.7

Q ss_pred             cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322         18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH   86 (261)
Q Consensus        18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~   86 (261)
                      ++...||+++||+++||||.||+|.|+...+...+.+.+|||+++     |+++++++           +++.+.++|++
T Consensus         2 ~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~ig-----dr~y~GL~glatDvqtl~~~~~fr~nLy~l   76 (204)
T KOG0180|consen    2 SIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIG-----DRLYLGLTGLATDVQTLLERLRFRKNLYEL   76 (204)
T ss_pred             cceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecC-----CeeEEeccccchhHHHHHHHHHHHHhHHHh
Confidence            456779999999999999999999999988888899999999999     99999886           77888899999


Q ss_pred             hcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhcc
Q psy10322         87 EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        87 ~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++.|.|+.+++++|.++|++|+.||.+..+|||+|++++|+|+.+|..|+... .+|+++|.++..+.+++|..|   
T Consensus        77 re~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly---  153 (204)
T KOG0180|consen   77 REEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY---  153 (204)
T ss_pred             hhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc---
Confidence            9999999999999999999999999999999999999999999999999999865 789999999999999999875   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +|||.+||.++.+.+||..+.+||+.+|++..+++
T Consensus       154 ---------------------------------------------~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyi  188 (204)
T KOG0180|consen  154 ---------------------------------------------EPNMEPDELFETISQALLNAVDRDALSGWGAVVYI  188 (204)
T ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEE
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             EEcCCEEEEeeccCCC
Q psy10322        246 ITKDGIKEYNFPLRKD  261 (261)
Q Consensus       246 itkdg~~~~~~~~r~~  261 (261)
                      |+||.+.++.++.|+|
T Consensus       189 I~kdkv~~r~lK~RmD  204 (204)
T KOG0180|consen  189 ITKDKVTKRTLKGRMD  204 (204)
T ss_pred             EccchhhhhhhhhcCC
Confidence            9999999999999998

>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3

Probab=100.00  E-value=3.2e-36  Score=265.43  Aligned_cols=171  Identities=13%  Similarity=0.137  Sum_probs=155.3

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.++. ++..++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        27 ~~~G~tvIgik~kdgVvla~d~r~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~  100 (212)
T cd03751          27 VENSGTAIGIRCKDGVVLAVEKLVTSK-LYEPGSNKRIFNVD-----RHIGIAVAGLLADGRHLVSRAREEAENYRDNYG  100 (212)
T ss_pred             HhcCCCEEEEEeCCEEEEEEEcccccc-ccCcchhcceeEec-----CcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHC
Confidence            367999999999999999999999864 55567899999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|++|+++++.+    ..|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|   
T Consensus       101 ~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~---  176 (212)
T cd03751         101 TPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLK---  176 (212)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhc---
Confidence            9999999999999987542    36899999999999954 599999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||+++++++|..+++-+...+.+|||.+
T Consensus       177 ---------------------------------------------~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~  211 (212)
T cd03751         177 ---------------------------------------------FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSW  211 (212)
T ss_pred             ---------------------------------------------cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEE
Confidence                                                         89999999999999999999996667788999887


Q ss_pred             E
Q psy10322        246 I  246 (261)
Q Consensus       246 i  246 (261)
                      +
T Consensus       212 ~  212 (212)
T cd03751         212 V  212 (212)
T ss_pred             C
Confidence            4

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5

Probab=100.00  E-value=1.9e-35  Score=259.72  Aligned_cols=173  Identities=17%  Similarity=0.221  Sum_probs=156.4

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      +++. ++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus        21 ~~a~-~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~   93 (213)
T cd03753          21 IEAI-KLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEID-----DHIGCAMSGLIADARTLIDHARVEAQNHR   93 (213)
T ss_pred             HHHH-hcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEc-----CCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence            3443 67999999999999999999999875 45667899999999     99999886           7888999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhcc---------ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHH
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYGK---------RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQA  156 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~~---------r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~  156 (261)
                      +.++++|+++.+++++++++|.+         +.|||+|++||||||+ ++|+||++||.|++.+++++|+|+++.++.+
T Consensus        94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~  172 (213)
T cd03753          94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQS  172 (213)
T ss_pred             HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHHH
Confidence            99999999999999999998652         1489999999999996 4599999999999999999999999999999


Q ss_pred             HHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccC
Q psy10322        157 LLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIY  236 (261)
Q Consensus       157 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~  236 (261)
                      +||+.|                                                +++||.|||++++++||+.+.+++ .
T Consensus       173 ~L~~~~------------------------------------------------~~~ls~eeai~l~~~~l~~~~~~~-~  203 (213)
T cd03753         173 SLQEKY------------------------------------------------HKDMTLEEAEKLALSILKQVMEEK-L  203 (213)
T ss_pred             HHHhhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHhccc-C
Confidence            999986                                                789999999999999999998876 6


Q ss_pred             CCCcEEEEEE
Q psy10322        237 TGDGVHLCAI  246 (261)
Q Consensus       237 ~g~~v~i~~i  246 (261)
                      ++++++|++|
T Consensus       204 ~~~~~ei~~~  213 (213)
T cd03753         204 NSTNVELATV  213 (213)
T ss_pred             CCCcEEEEEC
Confidence            7899999975

The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.

>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type

Probab=100.00  E-value=3.2e-34  Score=255.79  Aligned_cols=183  Identities=14%  Similarity=0.161  Sum_probs=159.1

Q ss_pred             hhhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH----------
Q psy10322          6 KQILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT----------   75 (261)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s----------   75 (261)
                      +|+........++.+ ++|+|+|||+++||||||+|++        +++.+|||+|+     ||++|+++          
T Consensus        10 ~~~~~~~~EYA~kav-~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~-----d~ig~~~sG~~~D~~~lv   75 (228)
T TIGR03691        10 EQIMRDRAELARKGI-ARGRSVVVLTYADGILFVAENP--------SRSLHKISELY-----DRIGFAAVGKYNEFENLR   75 (228)
T ss_pred             HHHHhhHHHHHHHHH-HcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEec-----CCEEEEEcCCHHHHHHHH
Confidence            344555556667776 5699999999999999999996        24689999999     99999887          


Q ss_pred             -HHHHHHHhhhhhcC-CcCCHHHHHHHHHHHHhcc---ccCCcceEEEEEEEcC-CCCeEEEEECCCCceeecC-EEEEe
Q psy10322         76 -ITILPFQMYLHEHN-KVMSTTSLAKMISIMMYGK---RFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERAN-FRAGG  148 (261)
Q Consensus        76 -~lr~~~~~y~~~~g-~~isv~~lA~~Is~~ly~~---r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~~-~~a~G  148 (261)
                       .++.+++.|++.++ .+++++.+|+++++.++..   +.|||+|++|+||||+ +.+|+||++||+|++.+++ ++|+|
T Consensus        76 ~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG  155 (228)
T TIGR03691        76 RAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMG  155 (228)
T ss_pred             HHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEEC
Confidence             56677888888887 6899999999888877532   5789999999999986 4669999999999999976 89999


Q ss_pred             cChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHH
Q psy10322        149 SSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFT  228 (261)
Q Consensus       149 ~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~  228 (261)
                      +|+..++++||++|                                                +++||.|||++++++||.
T Consensus       156 ~gs~~a~~~Lek~y------------------------------------------------~~~ms~eeai~la~~aL~  187 (228)
T TIGR03691       156 GTTEPIATALKESY------------------------------------------------RDGLSLADALGLAVQALR  187 (228)
T ss_pred             CChHHHHHHHHHhc------------------------------------------------CCCCCHHHHHHHHHHHHH
Confidence            99999999999987                                                789999999999999999


Q ss_pred             HHH--hcccCCCCcEEEEEEEcCC
Q psy10322        229 AAA--ERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       229 ~~~--~rd~~~g~~v~i~~itkdg  250 (261)
                      ++.  +||..+++++||++|++++
T Consensus       188 ~~~~~~r~~~~~~~iEv~ii~k~~  211 (228)
T TIGR03691       188 AGGNGEKRELDAASLEVAVLDRSR  211 (228)
T ss_pred             HHhccccccCCccceEEEEEeCCC
Confidence            996  4778999999999999865

Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.

>KOG0185|consensus

Probab=100.00  E-value=1e-34  Score=255.35  Aligned_cols=193  Identities=18%  Similarity=0.281  Sum_probs=176.0

Q ss_pred             cccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-------HHHHHHHhh
Q psy10322         12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-------ITILPFQMY   84 (261)
Q Consensus        12 ~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-------~lr~~~~~y   84 (261)
                      |.||+.+|++ +|+|+||+||+||||||||+..|+|++...++++|+|+++     ||+.++.+       ++++.+.+.
T Consensus        30 ~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVg-----dntllG~sGdisD~Q~i~r~L~~l  103 (256)
T KOG0185|consen   30 PIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVG-----DNTLLGASGDISDFQYIQRVLEQL  103 (256)
T ss_pred             CcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEec-----CceEEecCccHHHHHHHHHHHHHH
Confidence            8899999998 6999999999999999999999999999999999999999     99999987       555544433


Q ss_pred             h-----hhcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322         85 L-----HEHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL  157 (261)
Q Consensus        85 ~-----~~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~  157 (261)
                      .     +..|+.+.|+.++++|.+.||++|  +.|++.+++|||+|.+|+|+|.++|..|..++.+.+|+|.|.++++|+
T Consensus       104 ~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~  183 (256)
T KOG0185|consen  104 VIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPL  183 (256)
T ss_pred             HhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHH
Confidence            3     445589999999999999999987  789999999999999899999999999999999999999999999999


Q ss_pred             HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322        158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT  237 (261)
Q Consensus       158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~  237 (261)
                      |++.+                                       ++|      .++++.|||..++.+||+...+||+.+
T Consensus       184 lR~~~---------------------------------------~~k------~~~~s~eeA~~li~~cMrVL~YRD~ra  218 (256)
T KOG0185|consen  184 LRDEW---------------------------------------EKK------GEDLSREEAEALIEKCMRVLYYRDARA  218 (256)
T ss_pred             HHHhh---------------------------------------hcc------chhhHHHHHHHHHHHHHHHHhcccccc
Confidence            99976                                       211      478999999999999999999999999


Q ss_pred             CCcEEEEEEEcCCEEEEe
Q psy10322        238 GDGVHLCAITKDGIKEYN  255 (261)
Q Consensus       238 g~~v~i~~itkdg~~~~~  255 (261)
                      -+.+++++||++|+....
T Consensus       219 ~n~fqva~v~~eGv~i~~  236 (256)
T KOG0185|consen  219 SNEFQVATVDEEGVTISK  236 (256)
T ss_pred             ccceEEEEEcccceEecC
Confidence            999999999999997653

>KOG0174|consensus

Probab=100.00  E-value=1.3e-34  Score=248.84  Aligned_cols=184  Identities=27%  Similarity=0.355  Sum_probs=175.3

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|++|++|+|||||++|+|.+.|.++.+|-.+|+.+|+     |+++||.|           .++..+..|..+++
T Consensus        16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~it-----D~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~   90 (224)
T KOG0174|consen   16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPIT-----DNIYCCRSGSAADTQAIADIVRYHLELYTIQEN   90 (224)
T ss_pred             cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceecc-----ccEEEecCCchhhHHHHHHHHHHHHHHhhhhcC
Confidence            578999999999999999999999999999999999999999     99999986           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      +++.+...|+.+++++|++|-. +.+++||||||++.++++|.+...|+..+.+++..|+||.++++++|.+|       
T Consensus        91 ~~p~v~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~-------  162 (224)
T KOG0174|consen   91 KPPLVHTAASLFREICYNYREM-LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW-------  162 (224)
T ss_pred             CCchHHHHHHHHHHHHHhCHHh-hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc-------
Confidence            9999999999999999998744 77899999999988899999999999999999999999999999999975       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                                                               +++||+||++.++++|+..+++||.++|..|.+.+|+++
T Consensus       163 -----------------------------------------r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~  201 (224)
T KOG0174|consen  163 -----------------------------------------RPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKA  201 (224)
T ss_pred             -----------------------------------------CCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccC
Confidence                                                     999999999999999999999999999999999999999


Q ss_pred             CEEEEeecc
Q psy10322        250 GIKEYNFPL  258 (261)
Q Consensus       250 g~~~~~~~~  258 (261)
                      |++++.|+.
T Consensus       202 Gver~~~~~  210 (224)
T KOG0174|consen  202 GVERRFFPG  210 (224)
T ss_pred             CceEEEecC
Confidence            999998865

>KOG0177|consensus

Probab=100.00  E-value=5.3e-34  Score=243.88  Aligned_cols=178  Identities=22%  Similarity=0.340  Sum_probs=169.1

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      .+++||++.|+|++|+||...++.++...+.+|+++|+     +++.|+.+           ++.+++++|++++|.+++
T Consensus         2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls-----~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLS   76 (200)
T KOG0177|consen    2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLS-----DHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELS   76 (200)
T ss_pred             ceEEEeecCCEEEEeecchhhcceEEecccccceEEec-----cceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCC
Confidence            48999999999999999999999999999999999999     99999765           999999999999999999


Q ss_pred             HHHHHHHHHHHHhcc-c-cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322         94 TTSLAKMISIMMYGK-R-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQ  171 (261)
Q Consensus        94 v~~lA~~Is~~ly~~-r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~  171 (261)
                      |+.+|+++++.+... | .+||.|++++||+|++.+|.||++|..|+..+.++++.|.++.++.++||+.|         
T Consensus        77 p~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y---------  147 (200)
T KOG0177|consen   77 PSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYY---------  147 (200)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhh---------
Confidence            999999999998653 5 57999999999999977799999999999999999999999999999999987         


Q ss_pred             hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322        172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI  251 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~  251 (261)
                                                             +|+||.|||+++.++|+.++.+|-..+-.++.+.+|+|||+
T Consensus       148 ---------------------------------------~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGi  188 (200)
T KOG0177|consen  148 ---------------------------------------KPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGI  188 (200)
T ss_pred             ---------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCc
Confidence                                                   89999999999999999999999999999999999999999


Q ss_pred             EEEe
Q psy10322        252 KEYN  255 (261)
Q Consensus       252 ~~~~  255 (261)
                      +..+
T Consensus       189 r~~~  192 (200)
T KOG0177|consen  189 RKLD  192 (200)
T ss_pred             eecc
Confidence            8765

>KOG0176|consensus

Probab=100.00  E-value=5.2e-33  Score=239.61  Aligned_cols=176  Identities=18%  Similarity=0.206  Sum_probs=160.3

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      +.|+|.|||+.++|||||+++|++++.+ .++.++||++|+     +||+|+++           +.|.+++.|.+.||+
T Consensus        32 kLGsTaIGv~TkEgVvL~vEKritSpLm-~p~sveKi~eid-----~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e  105 (241)
T KOG0176|consen   32 KLGSTAIGVKTKEGVVLAVEKRITSPLM-EPSSVEKIVEID-----DHIGCAMSGLIADARTLVERARVETQNHWFTYGE  105 (241)
T ss_pred             hcCCceeeeeccceEEEEEeccccCccc-Cchhhhhheehh-----hceeeeccccccchHHHHHHHHHHhhhceeecCC
Confidence            5799999999999999999999999854 568999999999     99999987           888899999999999


Q ss_pred             cCCHHHHHHHHHHHHhcc-------c--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322         91 VMSTTSLAKMISIMMYGK-------R--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ  161 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~-------r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~  161 (261)
                      +|+++.+.+.++++..++       +  .|||||++++||+|++ +|+||..||+|+|+++++.|+|+|+.-+++.|+++
T Consensus       106 ~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~-gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e  184 (241)
T KOG0176|consen  106 PISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET-GPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEE  184 (241)
T ss_pred             cccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC-CceEEEeCCCCceEEecceeccccchHHHHHHHHH
Confidence            999999999999987543       2  3799999999999965 59999999999999999999999999999999998


Q ss_pred             hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322        162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV  241 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v  241 (261)
                      |                                                .++|+++||+.++...|+.+++.- .+.++|
T Consensus       185 ~------------------------------------------------~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nv  215 (241)
T KOG0176|consen  185 Y------------------------------------------------HKDLTLKEAEKIVLKILKQVMEEK-LNSNNV  215 (241)
T ss_pred             H------------------------------------------------hhcccHHHHHHHHHHHHHHHHHHh-cCccce
Confidence            8                                                789999999999999999999954 567899


Q ss_pred             EEEEEEcC-CEEE
Q psy10322        242 HLCAITKD-GIKE  253 (261)
Q Consensus       242 ~i~~itkd-g~~~  253 (261)
                      ++++|++. +.+.
T Consensus       216 ev~~vt~e~~f~~  228 (241)
T KOG0176|consen  216 EVAVVTPEGEFHI  228 (241)
T ss_pred             EEEEEcccCceEe
Confidence            99999987 4443

>KOG0175|consensus

Probab=99.98  E-value=5.5e-32  Score=240.66  Aligned_cols=178  Identities=25%  Similarity=0.315  Sum_probs=169.5

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      .+|||++|++++.|||+|+|+|++.|.+|.+..+.||.+||     ++..-.++           .+..+|++|++++++
T Consensus        69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn-----~ylLGTmAGgAADCqfWer~L~kecRL~eLRnke  143 (285)
T KOG0175|consen   69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEIN-----PYLLGTMAGGAADCQFWERVLAKECRLHELRNKE  143 (285)
T ss_pred             cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeec-----hhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence            47999999999999999999999999999999999999999     88776554           788899999999999


Q ss_pred             cCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322         91 VMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK  170 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~  170 (261)
                      .|+|.+.++++++++|++|...+.+...|+|||+.| |.||++|.-|+-...+..++|+|+.+++++||+.|        
T Consensus       144 riSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgY--------  214 (285)
T KOG0175|consen  144 RISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGY--------  214 (285)
T ss_pred             ceehHHHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCC--------
Confidence            999999999999999999988899999999999765 99999999999999999999999999999999998        


Q ss_pred             chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322        171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg  250 (261)
                                                              +++||.|||.+|+++|+..|-.||..+|.-|.++-|++||
T Consensus       215 ----------------------------------------r~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edG  254 (285)
T KOG0175|consen  215 ----------------------------------------RYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG  254 (285)
T ss_pred             ----------------------------------------CCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCcc
Confidence                                                    8999999999999999999999999999999999999999


Q ss_pred             EEE
Q psy10322        251 IKE  253 (261)
Q Consensus       251 ~~~  253 (261)
                      +..
T Consensus       255 W~~  257 (285)
T KOG0175|consen  255 WVK  257 (285)
T ss_pred             cee
Confidence            864

>KOG0173|consensus

Probab=99.97  E-value=7e-31  Score=233.05  Aligned_cols=180  Identities=24%  Similarity=0.324  Sum_probs=165.5

Q ss_pred             ccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhh
Q psy10322         19 PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHE   87 (261)
Q Consensus        19 ~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~   87 (261)
                      ..+.+|+|++||.+|||||+++|+|++.|..+..++.+||+.|.     ++|+||.+           .+-.+++++.+.
T Consensus        32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia-----~~IyccGAGtAADte~vt~m~ss~l~Lh~l~  106 (271)
T KOG0173|consen   32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIA-----PNIYCCGAGTAADTEMVTRMISSNLELHRLN  106 (271)
T ss_pred             cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcc-----cceEEccCCchhhHHHHHHHHHHHHHHHHhc
Confidence            34678999999999999999999999999999899999999999     99999875           555677888899


Q ss_pred             cCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccc
Q psy10322         88 HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQH  167 (261)
Q Consensus        88 ~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~  167 (261)
                      .++.+.+-..-+++.++|+.+.. -.++.+|+||+|..| |+||++.|-|+....+|.+.|||+..+..+||..|     
T Consensus       107 t~R~~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~-----  179 (271)
T KOG0173|consen  107 TGRKPRVVTALRMLKQHLFRYQG-HIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW-----  179 (271)
T ss_pred             cCCCCceeeHHHHHHHHHHHhcC-cccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhc-----
Confidence            99999999999999999976643 388999999999877 99999999999999999999999999999999875     


Q ss_pred             cccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Q psy10322        168 SSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT  247 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~it  247 (261)
                                                                 +++|++|||++|+.+|+.+.+..|..+|.+|.+|+|+
T Consensus       180 -------------------------------------------k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~  216 (271)
T KOG0173|consen  180 -------------------------------------------KPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVIT  216 (271)
T ss_pred             -------------------------------------------CcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEe
Confidence                                                       9999999999999999999999999999999999999


Q ss_pred             cCCEEE
Q psy10322        248 KDGIKE  253 (261)
Q Consensus       248 kdg~~~  253 (261)
                      +.++..
T Consensus       217 ~~~~~~  222 (271)
T KOG0173|consen  217 KKGVEY  222 (271)
T ss_pred             CCCccc
Confidence            887754

>PRK05456 ATP-dependent protease subunit HslV; Provisional

Probab=99.96  E-value=1.6e-28  Score=210.79  Aligned_cols=155  Identities=19%  Similarity=0.163  Sum_probs=134.7

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV   91 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~   91 (261)
                      |+|+|||+++||||||+|+|++.|.++.+++.+||++| +     +|++|+++           +++.+++.|+.  +  
T Consensus         1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~-----d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~--   71 (172)
T PRK05456          1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYN-----GKVLAGFAGSTADAFTLFERFEAKLEEHQG--N--   71 (172)
T ss_pred             CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCC-----CCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--
Confidence            68999999999999999999999999999999999999 9     99999876           77888888872  2  


Q ss_pred             CCHHHHHHHHHHHHhcccc-CCcceEEEEEEEcCCCCeEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhhccccc
Q psy10322         92 MSTTSLAKMISIMMYGKRF-FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVGIIQHS  168 (261)
Q Consensus        92 isv~~lA~~Is~~ly~~r~-~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~  168 (261)
                      + ++.+|++++.+. ..+. +|+.+++|++  |.   |+||++||.|++.+.  ++.|+|+|+.+++++||++|      
T Consensus        72 ~-~~~~a~l~~~l~-~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y------  138 (172)
T PRK05456         72 L-LRAAVELAKDWR-TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALL------  138 (172)
T ss_pred             c-HHHHHHHHHHHH-hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhh------
Confidence            2 577777775553 2233 5888999994  43   799999999999665  89999999999999999987      


Q ss_pred             ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                + ++|   ||++++++|+.++.+||..+|+++++-.
T Consensus       139 ------------------------------------------~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~  171 (172)
T PRK05456        139 ------------------------------------------ENTDL---SAEEIAEKALKIAADICIYTNHNITIEE  171 (172)
T ss_pred             ------------------------------------------hcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence                                                      7 999   9999999999999999999999998754

>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome

Probab=99.96  E-value=1.3e-27  Score=204.95  Aligned_cols=154  Identities=18%  Similarity=0.184  Sum_probs=132.4

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCC-eEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTY-NFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d-~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      +|+|||+++||||||+|+|++.|.++.+++.+||++|+     + |++|+++           +++.+++.|+++.+   
T Consensus         1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~-----d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~---   72 (171)
T cd01913           1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY-----NGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLL---   72 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeC-----CCCEEEEecccHHHHHHHHHHHHHHHHHhhchHH---
Confidence            68999999999999999999999999999999999999     9 9999886           88899999988766   


Q ss_pred             CHHHHHHHHHHHHhccccCCcc-eEEEEEEEcCCCCeEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         93 STTSLAKMISIMMYGKRFFPYY-TSTIIAGLDPEGKGCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~r~~P~~-v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                        +.+++++..++ ..+.+|+. +.+|++++     ++||.+||.|++.+.  ++.|+|||+.+++++||.+|       
T Consensus        73 --~~aa~l~~~l~-~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~y-------  137 (171)
T cd01913          73 --RAAVELAKDWR-TDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALL-------  137 (171)
T ss_pred             --HHHHHHHHHHH-hccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhh-------
Confidence              45666655553 22455666 66666543     399999999999988  49999999999999999998       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCC-CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTP-VPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                               +++ ||   +.+++++|++.|.+||+.+|++|.+-.
T Consensus       138 -----------------------------------------k~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~  170 (171)
T cd01913         138 -----------------------------------------DHTDLS---AEEIARKALKIAADICIYTNHNITVEE  170 (171)
T ss_pred             -----------------------------------------ccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence                                                     784 99   559999999999999999999998754

HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.

>KOG0183|consensus

Probab=99.95  E-value=7e-28  Score=209.98  Aligned_cols=175  Identities=17%  Similarity=0.228  Sum_probs=159.0

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +..|+|+||++++|+|||+.+++... .+.+.+...||..++     +|+.|+++           ++|.+|+.|++..+
T Consensus        27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld-----~hV~mafaGl~aDArilinrArvecqShrlt~e  100 (249)
T KOG0183|consen   27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLD-----DHVVMAFAGLTADARILINRARVECQSHRLTLE  100 (249)
T ss_pred             HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeec-----ceeeEEecCCCccceeehhhHhHhhhhhhcccC
Confidence            46799999999999999999998655 467889999999999     99999987           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .+++++.++++|+.+-+.+    ..||||+|++|+|+|++|.|+||.+||+|.|++|++.|+|.++..+..+||++|   
T Consensus       101 dpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y---  177 (249)
T KOG0183|consen  101 DPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNY---  177 (249)
T ss_pred             CCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhc---
Confidence            9999999999999986433    358999999999999999999999999999999999999999999999999998   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                          .       .++..+.+++++|++++|.++..   ..++++++++
T Consensus       178 ------------------------------------~-------e~~~~~~~~~ikL~ir~LleVvq---s~~~nie~aV  211 (249)
T KOG0183|consen  178 ------------------------------------K-------EEAIATEGETIKLAIRALLEVVQ---SGGKNIEVAV  211 (249)
T ss_pred             ------------------------------------c-------cccccccccHHHHHHHHHHHHhh---cCCCeeEEEE
Confidence                                                1       14568889999999999999998   5688999999


Q ss_pred             EEcCC
Q psy10322        246 ITKDG  250 (261)
Q Consensus       246 itkdg  250 (261)
                      +++++
T Consensus       212 m~~~~  216 (249)
T KOG0183|consen  212 MKRRK  216 (249)
T ss_pred             EecCC
Confidence            99877

>KOG0178|consensus

Probab=99.95  E-value=9.8e-28  Score=208.67  Aligned_cols=180  Identities=17%  Similarity=0.216  Sum_probs=163.3

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      ++.+|+|||-++||||||+++|.++..+--+...+||++|+     ||++|+++           .+|..+|.|.+.+|+
T Consensus        29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~-----d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e  103 (249)
T KOG0178|consen   29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLN-----DNIACAVAGLTSDANVLKNYARIIAQRYLFRYGE  103 (249)
T ss_pred             hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcC-----CceEEEEecccccHHHHHHHHHHHHHHHHHHhCC
Confidence            56889999999999999999999998777778899999999     99999875           788889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322         91 VMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQ  166 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~  166 (261)
                      +||.+.|++.++++.+.+    ..||||||++-+|||..-+.+||+.||+|++..|++.|+|.++..++.+|...|    
T Consensus       104 ~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdy----  179 (249)
T KOG0178|consen  104 EIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDY----  179 (249)
T ss_pred             CCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhh----
Confidence            999999999999987432    268999999999999866699999999999999999999999999999999987    


Q ss_pred             ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                                 ....++.|||+.+|++.|...++.+..+.+.+|++.+
T Consensus       180 -------------------------------------------kdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~  216 (249)
T KOG0178|consen  180 -------------------------------------------KDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATI  216 (249)
T ss_pred             -------------------------------------------ccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEE
Confidence                                                       0234679999999999999999999999999999999


Q ss_pred             EcCCEEE
Q psy10322        247 TKDGIKE  253 (261)
Q Consensus       247 tkdg~~~  253 (261)
                      +++.-+.
T Consensus       217 ~k~~~k~  223 (249)
T KOG0178|consen  217 TKDCNKT  223 (249)
T ss_pred             EecCCce
Confidence            9987654

>KOG0182|consensus

Probab=99.95  E-value=6.4e-27  Score=203.69  Aligned_cols=189  Identities=18%  Similarity=0.225  Sum_probs=169.6

Q ss_pred             ccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHH
Q psy10322         13 IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPF   81 (261)
Q Consensus        13 ~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~   81 (261)
                      .+..|.++.+.|-|+||+++||++|+++.++.+.+ +++++++..+|+|.     .+|+|+++           ++|.++
T Consensus        25 VEYafkAin~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~it-----k~ig~v~tG~~aDar~~v~rar~eA   98 (246)
T KOG0182|consen   25 VEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRIT-----KKIGCVITGMIADARSQVQRARYEA   98 (246)
T ss_pred             eehHHHHhhcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEee-----ccceEEEecCCcchHHHHHHHHHHH
Confidence            46678888777999999999999999999999887 67888999999999     99999876           888899


Q ss_pred             HhhhhhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322         82 QMYLHEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL  157 (261)
Q Consensus        82 ~~y~~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~  157 (261)
                      ..++|.||.+||++.||++++++.  |.++  +||+||.+++.|+|++.||.||.+||.|-+..+++++.|..+..+..+
T Consensus        99 a~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsf  178 (246)
T KOG0182|consen   99 AEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSF  178 (246)
T ss_pred             HhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHH
Confidence            999999999999999999999975  4444  899999999999999888999999999999999999999999999999


Q ss_pred             HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322        158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT  237 (261)
Q Consensus       158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~  237 (261)
                      ||+.|                                       .  .     +.+.+.+|++++++.||.+++.-|.. 
T Consensus       179 LEKk~---------------------------------------K--k-----~~~~t~~e~ve~ai~al~~sl~~Dfk-  211 (246)
T KOG0182|consen  179 LEKKY---------------------------------------K--K-----DIDLTFEETVETAISALQSSLGIDFK-  211 (246)
T ss_pred             HHHhh---------------------------------------c--c-----CccchHHHHHHHHHHHHHHHHhcccC-
Confidence            99998                                       0  0     34588999999999999999999976 


Q ss_pred             CCcEEEEEEEcCCEEEE
Q psy10322        238 GDGVHLCAITKDGIKEY  254 (261)
Q Consensus       238 g~~v~i~~itkdg~~~~  254 (261)
                      ...+||.+++++.-+..
T Consensus       212 ~se~EVgvv~~~~p~f~  228 (246)
T KOG0182|consen  212 SSELEVGVVTVDNPEFR  228 (246)
T ss_pred             CcceEEEEEEcCCccee
Confidence            57999999998875443

>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit

Probab=99.95  E-value=8.1e-27  Score=200.02  Aligned_cols=155  Identities=19%  Similarity=0.186  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      +|+|||+++||||||+|+|++.|.++.+++.+||++| +     +|++|+++           +++.+++.|+++.    
T Consensus         1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~-----d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~----   71 (171)
T TIGR03692         1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYN-----GKVLAGFAGSTADAFTLFERFEAKLEEYQGNL----   71 (171)
T ss_pred             CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCC-----CCEEEEecchHHHHHHHHHHHHHHHHHccCch----
Confidence            6899999999999999999999999999999999999 8     99999886           7888888887632    


Q ss_pred             CHHHHHHHHHHHHhccccCCcc-eEEEEEEEcCCCCeEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         93 STTSLAKMISIMMYGKRFFPYY-TSTIIAGLDPEGKGCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~r~~P~~-v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                       .+.++++++++. .++..|+. +.+|++||     ++||.+||.|++.+.  ++.++||||.+++++||.+|       
T Consensus        72 -~~~~a~l~~~~~-~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y-------  137 (171)
T TIGR03692        72 -TRAAVELAKDWR-TDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALL-------  137 (171)
T ss_pred             -HHHHHHHHHHHh-hcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhh-------
Confidence             477888877742 22334444 66666543     499999999999995  69999999999999999987       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                      .        +++|+   |++++.+|+..|++||+.+|+++.|-.
T Consensus       138 --------------------------------~--------~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~  170 (171)
T TIGR03692       138 --------------------------------R--------NTDLS---AEEIAREALKIAADICIYTNHNITIEE  170 (171)
T ss_pred             --------------------------------h--------cCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence                                            0        35666   999999999999999999999998754

The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.

>KOG0181|consensus

Probab=99.95  E-value=4.4e-27  Score=202.58  Aligned_cols=185  Identities=17%  Similarity=0.228  Sum_probs=164.5

Q ss_pred             ccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHH
Q psy10322         13 IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPF   81 (261)
Q Consensus        13 ~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~   81 (261)
                      +.+..++. .+|.+.|||+-.||||||++++..+. +.+....+|+++|.     +||+|..|           ..|+.+
T Consensus        22 ieyAL~Av-~~G~~SvGi~A~nGvVlatekk~~s~-L~~~~sv~KV~~i~-----~~IG~vYSGmgpD~RvlV~~~rkiA   94 (233)
T KOG0181|consen   22 IEYALTAV-VNGQTSVGIKAANGVVLATEKKDVSP-LVDEESVRKVEKIT-----PHIGCVYSGMGPDYRVLVHKSRKIA   94 (233)
T ss_pred             HHHHHHHH-hCCCCceeeeecCceEEEeccCCCCc-cchhhhhhhHhhcc-----CCcceEEecCCCceeehhhHHHHHH
Confidence            33444554 57999999999999999999988776 45668899999999     99999887           678888


Q ss_pred             HhhhhhcCCcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322         82 QMYLHEHNKVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL  157 (261)
Q Consensus        82 ~~y~~~~g~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~  157 (261)
                      ++|..-|+++|++..+.+.++..|+.+    ..||||+++++||||+ ++|.||++||+|++..|+++|.|.+...+..+
T Consensus        95 e~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktF  173 (233)
T KOG0181|consen   95 EQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTF  173 (233)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHH
Confidence            899999999999999999999999653    3689999999999996 56999999999999999999999999999999


Q ss_pred             HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322        158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT  237 (261)
Q Consensus       158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~  237 (261)
                      ||+.|                                                ..++.+|+++..++-+|++..+-. .+
T Consensus       174 lEkR~------------------------------------------------~edleldd~ihtailtlkE~fege-~~  204 (233)
T KOG0181|consen  174 LEKRY------------------------------------------------NEDLELDDAIHTAILTLKESFEGE-MT  204 (233)
T ss_pred             HHHHh------------------------------------------------ccccccchHHHHHHHHHHHHhccc-cc
Confidence            99987                                                689999999999999999999976 46


Q ss_pred             CCcEEEEEEEcCCEEEE
Q psy10322        238 GDGVHLCAITKDGIKEY  254 (261)
Q Consensus       238 g~~v~i~~itkdg~~~~  254 (261)
                      .++++|.++..+|.+..
T Consensus       205 ~~nieigv~~~~~F~~l  221 (233)
T KOG0181|consen  205 AKNIEIGVCGENGFRRL  221 (233)
T ss_pred             cCceEEEEecCCceeec
Confidence            89999999998887654

>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid

Probab=99.94  E-value=3.3e-25  Score=180.77  Aligned_cols=150  Identities=25%  Similarity=0.316  Sum_probs=140.6

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||+|+|++.+.+......+..|+++++     ++++++++           +++.+++.|++.++.+++
T Consensus         1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~-----~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~   75 (164)
T cd01901           1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNE-----DGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPIS   75 (164)
T ss_pred             CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEec-----CCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            58999999999999999999999877678999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceeec-CEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322         94 TTSLAKMISIMMYGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA-NFRAGGSSGALLQALLDNQVGIIQHSSKQ  171 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~  171 (261)
                      +..+++.+++.++.++ .+|+++++||||+|+ ++|+||.+||.|++.+. +++++|+++..+.++|++.+         
T Consensus        76 ~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~---------  145 (164)
T cd01901          76 VVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLY---------  145 (164)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHh---------
Confidence            9999999999998876 489999999999997 77999999999999999 99999999999999999986         


Q ss_pred             hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHH
Q psy10322        172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFT  228 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~  228 (261)
                                                             +++++.+|+++++.+||.
T Consensus       146 ---------------------------------------~~~~~~~~~~~~~~~~l~  163 (164)
T cd01901         146 ---------------------------------------KPDMTLEEAVELALKALK  163 (164)
T ss_pred             ---------------------------------------cCCCCHHHHHHHHHHHHh
Confidence                                                   788999999999999985

N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t

>KOG0184|consensus

Probab=99.94  E-value=9.4e-26  Score=197.54  Aligned_cols=172  Identities=12%  Similarity=0.105  Sum_probs=148.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+++|+||||||||||+++++-+++++++. ...+|||.|+     +|++|+++           ++|.++..|+-+|+
T Consensus        31 ven~~T~IGIk~kdGVVl~vEKli~SkLy~p-~sn~ri~~V~-----r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~  104 (254)
T KOG0184|consen   31 VENSGTCIGIKCKDGVVLAVEKLITSKLYEP-GSNERIFSVD-----RHIGMAVAGLIPDGRHLVNRARDEAASWRKNYG  104 (254)
T ss_pred             HhcCCcEEEEecCCeEEEEEeeeeccccccc-CCCCceEeec-----ccccEEEeccccchHHHHHHHHHHHHHHHHhcC
Confidence            5689999999999999999999999997765 6789999999     99999876           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .++|.+.+|.+++++++.+.    .|||||+.++++||. ++|+||.+||+|..+.++.+|+|.|.+.+..-||+.-   
T Consensus       105 ~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~---  180 (254)
T KOG0184|consen  105 DPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLK---  180 (254)
T ss_pred             CCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcc---
Confidence            99999999999999986542    589999999999994 5699999999999999999999999999999999852   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   -..|+.+|+++-+.+.+..+-+-.-.-.-.+|+..
T Consensus       181 ---------------------------------------------~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~w  215 (254)
T KOG0184|consen  181 ---------------------------------------------IDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGW  215 (254)
T ss_pred             ---------------------------------------------cccccHHHHHHHHHheeEeecccccCcceEEEEEE
Confidence                                                         35899999999999988766543222223466666


Q ss_pred             EE
Q psy10322        246 IT  247 (261)
Q Consensus       246 it  247 (261)
                      +.
T Consensus       216 vg  217 (254)
T KOG0184|consen  216 VG  217 (254)
T ss_pred             EE
Confidence            65

>KOG0863|consensus

Probab=99.90  E-value=3.2e-23  Score=182.51  Aligned_cols=175  Identities=17%  Similarity=0.172  Sum_probs=156.4

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +..|+++||+|.++..||+|-+|..+.   .+..++|||+|+     +|++++++           +++.++..+++.++
T Consensus        29 vkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD-----~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~  100 (264)
T KOG0863|consen   29 VKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKID-----DHIGISIAGLTADARVLSRYLRQECLNSRFIYG  100 (264)
T ss_pred             HhcccceEeecccceEEEeeeccchhH---HHHhhheeEecc-----cccceEEeccCcchHHHHHHHHHHHhhhhhccC
Confidence            457999999999999999999987764   357889999999     99999876           89999999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      +++++..+...+.+-++..    ..|||||.++++|||+.| |+||.++|+|++.+++..++|+.|+.+..+||++.   
T Consensus       101 r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~---  176 (264)
T KOG0863|consen  101 RPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNL---  176 (264)
T ss_pred             CcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHH---
Confidence            9999999999999876532    247999999999999766 99999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhc-ccCCCCcEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAER-DIYTGDGVHLC  244 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~r-d~~~g~~v~i~  244 (261)
                                                          +     +  .+++++||.|..++.||+..+-. +..++.++.|+
T Consensus       177 ------------------------------------e-----~--f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~  213 (264)
T KOG0863|consen  177 ------------------------------------E-----E--FEDSSPEELIKHGIMALRETLPEDEDLTGENVSIA  213 (264)
T ss_pred             ------------------------------------H-----H--HhcCCHHHHHHHHHHHHHhhcCcccccccceeEEE
Confidence                                                1     1  47899999999999999999974 47889999999


Q ss_pred             EEEcCC
Q psy10322        245 AITKDG  250 (261)
Q Consensus       245 ~itkdg  250 (261)
                      |+.||-
T Consensus       214 Ivgkd~  219 (264)
T KOG0863|consen  214 IVGKDE  219 (264)
T ss_pred             EEeCCC
Confidence            999984

>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=3.6e-09  Score=92.73  Aligned_cols=179  Identities=19%  Similarity=0.221  Sum_probs=137.0

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH---HHHHHHHhhh------hhcC----C
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT---ITILPFQMYL------HEHN----K   90 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s---~lr~~~~~y~------~~~g----~   90 (261)
                      ++-+||++-..|.|.++|+|...|.. .-...+|+|...  .|++++.+.++   .+..++-.+.      .+.+    +
T Consensus         1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~--~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n   77 (255)
T COG3484           1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFE--LPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLN   77 (255)
T ss_pred             CceEEEEEeccceEEecccccccCch-HHHHHHHHhhcc--CCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhc
Confidence            36799999999999999999998842 235778998866  99999988665   2222221111      1222    2


Q ss_pred             cCCHHHHHHHHHHHH---hcc-c------cCCcceEEEEEEEcCCCCeEEEEECCCCceee----cCEEEEecChHHHHH
Q psy10322         91 VMSTTSLAKMISIMM---YGK-R------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER----ANFRAGGSSGALLQA  156 (261)
Q Consensus        91 ~isv~~lA~~Is~~l---y~~-r------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~----~~~~a~G~g~~~~~~  156 (261)
                      .++.-..+.++....   +.+ +      .--|.|++|+||-=.-+.|+||.+-|-|++.+    .+|.-+|.. .+-.|
T Consensus        78 ~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKP  156 (255)
T COG3484          78 IPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKP  156 (255)
T ss_pred             chhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCch
Confidence            456667777777653   332 1      23588999999976544589999999999976    479999985 57889


Q ss_pred             HHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccC
Q psy10322        157 LLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIY  236 (261)
Q Consensus       157 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~  236 (261)
                      +|++.+                                                ..++++|||.+++.-.|.+.++.+++
T Consensus       157 ildR~i------------------------------------------------~~~~pLeea~kcaLvS~DSTlkSNiS  188 (255)
T COG3484         157 ILDRTI------------------------------------------------TYDTPLEEAAKCALVSFDSTLKSNIS  188 (255)
T ss_pred             hhhhhh------------------------------------------------hccCCHHHHhhheEEecchhhhcccc
Confidence            999987                                                67999999999999999999999999


Q ss_pred             CCCcEEEEEEEcCCEEEE
Q psy10322        237 TGDGVHLCAITKDGIKEY  254 (261)
Q Consensus       237 ~g~~v~i~~itkdg~~~~  254 (261)
                      .|-.+.+-+..+|-.+..
T Consensus       189 VGlPldLl~~e~ds~~v~  206 (255)
T COG3484         189 VGLPLDLLVYEADSFSVR  206 (255)
T ss_pred             ccCCceeEEEeccceeee
Confidence            999999999999976543

>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.1e-06  Score=74.78  Aligned_cols=161  Identities=17%  Similarity=0.166  Sum_probs=108.6

Q ss_pred             CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322         23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV   91 (261)
Q Consensus        23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~   91 (261)
                      ++||+++++-++=|+||+|..++.|..+...+.+|+-+|.    +.++..+++           .+...+++|.   +.-
T Consensus         3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~----~gkvlaGFAGstADaftLfe~fe~kle~~~---g~L   75 (178)
T COG5405           3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY----NGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GDL   75 (178)
T ss_pred             eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHc----CCcEEEEecccchhHHHHHHHHHHHHHHcc---CcH
Confidence            6899999999999999999999999999988887777666    147777765           3333344332   111


Q ss_pred             CCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee--cCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         92 MSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER--ANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        92 isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~--~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                        .+.+..+..+---.+..|-+-+-++|+  |+   -.++-+...|-..+  .++.|+|||..++++--...+       
T Consensus        76 --~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~-------  141 (178)
T COG5405          76 --FRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALM-------  141 (178)
T ss_pred             --HHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHH-------
Confidence              122222222211011123355556664  54   35777777776544  459999999999998877655       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT  247 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~it  247 (261)
                                                      +        .+++|   |.+++.+++..+.+-+++++.++.|-.+.
T Consensus       142 --------------------------------~--------~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~  176 (178)
T COG5405         142 --------------------------------E--------NTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR  176 (178)
T ss_pred             --------------------------------h--------ccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence                                            1        34666   67889999999988888888887776553

>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.74  E-value=0.15  Score=44.87  Aligned_cols=41  Identities=12%  Similarity=0.120  Sum_probs=36.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        209 VDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       209 ~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                      .|++.|+++++.++..++|..+.+.-...+..+++...++.
T Consensus       140 ~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~  180 (194)
T PF09894_consen  140 YWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK  180 (194)
T ss_pred             hcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence            36899999999999999999999988888889998887753

They do show distant similarity to NTPases and to nucleic acid binding enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3unb_L	213	Mouse Constitutive 20s Proteasome In Complex With P		5e-48
1iru_M	213	Crystal Structure Of The Mammalian 20s Proteasome A		4e-47
1g0u_L	241	A Gated Channel Into The Proteasome Core Particle L		5e-36
1ryp_M	222	Crystal Structure Of The 20s Proteasome From Yeast		7e-33
3h4p_a	219	Proteasome 20s Core Particle From Methanocaldococcu		3e-08
1iru_J	205	Crystal Structure Of The Mammalian 20s Proteasome A		5e-08
3unb_I	205	Mouse Constitutive 20s Proteasome In Complex With P		6e-08
1ryp_J	204	Crystal Structure Of The 20s Proteasome From Yeast		3e-06
1g0u_I	205	A Gated Channel Into The Proteasome Core Particle L		3e-06
1j2q_H	202	20s Proteasome In Complex With Calpain-inhibitor I		1e-05

>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 213

Iteration: 1
 Score =  187 bits (475), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 141/252 (55%), Gaps = 45/252 (17%)
Query: 16  HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY---N 69
            FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+  K +   D      +    +
Sbjct: 1   RFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGD 60
Query: 70  FLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC 129
            L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD EGKG 
Sbjct: 61  CLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGA 120
Query: 130 VYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
           VYS+DP+G  +R +F+             DNQV                           
Sbjct: 121 VYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV--------------------------- 153
Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249
                       GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C +TK+
Sbjct: 154 ------------GFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201
Query: 250 GIKEYNFPLRKD 261
           GI+E   PLRKD
Sbjct: 202 GIREETVPLRKD 213

>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 213

Iteration: 1
 Score =  184 bits (468), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/252 (38%), Positives = 139/252 (55%), Gaps = 45/252 (17%)
Query: 16  HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY---N 69
            FSPY  NGGT +A+AG D+AI+ASDTRLS G++I+TR+  K +   D      +    +
Sbjct: 1   RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGD 60
Query: 70  FLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC 129
            L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD EGKG 
Sbjct: 61  CLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGA 120
Query: 130 VYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
           VYS+DP+G  +R +F+             DNQV                           
Sbjct: 121 VYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV--------------------------- 153
Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249
                       GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C +TK+
Sbjct: 154 ------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201
Query: 250 GIKEYNFPLRKD 261
           GI+E    LRKD
Sbjct: 202 GIREETVSLRKD 213

>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 131/258 (50%), Gaps = 38/258 (14%)
Query: 11  TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD--HYYYRPTY 68
           TPI+H F+PY DNGGT + +AG D+A++A DTR    Y+I +R + K+FD          
Sbjct: 15  TPIEHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSAN 74
Query: 69  NFLMIFTITILPFQ----MYLHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLD 123
            F       +  F+     Y  +HN K +S  S A+ I  ++YGKRFFPYY  TIIAGLD
Sbjct: 75  GFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD 134
Query: 124 PEGKGCVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVGIIQHSSKQMKSVLGGIRTHD 183
            +GKG VYS+DP+G  ER   R             DNQV        Q +    G     
Sbjct: 135 EDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNF----KNQYEPGTNG----- 185
Query: 184 LALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243
             + + +  LS                     +E+ I +V+D+FT+A ER I  GDG+ +
Sbjct: 186 -KVKKPLKYLS---------------------VEEVIKLVRDSFTSATERHIQVGDGLEI 223
Query: 244 CAITKDGIKEYNFPLRKD 261
             +TKDG+++  + L++D
Sbjct: 224 LIVTKDGVRKEFYELKRD 241

>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 222

Iteration: 1
 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/253 (34%), Positives = 126/253 (49%), Gaps = 38/253 (15%)
Query: 16  HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD--HYYYRPTYNFLMI 73
            F+PY DNGGT + +AG D+A++A DTR    Y+I +R + K+FD           F   
Sbjct: 1   QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAAD 60
Query: 74  FTITILPFQ----MYLHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKG 128
               +  F+     Y  +HN K +S  S A+ I  ++YGKRFFPYY  TIIAGLD +GKG
Sbjct: 61  GDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKG 120
Query: 129 CVYSYDPIGHTERANFRXXXXXXXXXXXXXDNQVGIIQHSSKQMKSVLGGIRTHDLALTR 188
            VYS+DP+G  ER   R             DNQV        Q +    G       + +
Sbjct: 121 AVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNF----KNQYEPGTNG------KVKK 170
Query: 189 EINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK 248
            +  LS                     +E+ I +V+D+FT+A ER I  GDG+ +  +TK
Sbjct: 171 PLKYLS---------------------VEEVIKLVRDSFTSATERHIQVGDGLEILIVTK 209
Query: 249 DGIKEYNFPLRKD 261
           DG+++  + L++D
Sbjct: 210 DGVRKEFYELKRD 222

>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus Jannaschii Length = 219

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 91/234 (38%), Gaps = 55/234 (23%)
Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTITIL 79
           TTV +   D  I+A+D R S G  +  +E  KL+  D Y        +     I  + I 
Sbjct: 3   TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIA 62
Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI-GH 138
             ++Y     + +   + A ++S +++  R FP+ T  II G D      ++S DP+ G 
Sbjct: 63  EAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGM 122
Query: 139 TERANFRXXXXXXXXXXXXXDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLT 198
            E   F                  G+++    +  SV  GI+   LAL    NAL S   
Sbjct: 123 NEEKTFTATGSGSPIAY-------GVLEAGYDRDMSVEEGIK---LAL----NALKS--- 165
Query: 199 ILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                                          A ERD ++G+G+ L  ITKDG+K
Sbjct: 166 -------------------------------AMERDTFSGNGISLAVITKDGVK 188

>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75 A Resolution Length = 205

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
            S  S NGG  +A+ G +   IA+D R      + T +  K+F   D  Y         +
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 74  FTITI-LPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGC 129
            T+   L F++ L+E    + +   +L  M++ ++Y KRF PYYT  +IAGLDP+  K  
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 130 VYSYDPIG 137
           + S D IG
Sbjct: 121 ICSLDLIG 128

>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957 Length = 205

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
            S  S NGG  +A+ G +   IA+D R      + T +  K+F   D  Y         +
Sbjct: 1   MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 74  FTITI-LPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGC 129
            T+   L F++ L+E    + +   +L  M++ ++Y KRF PYYT  +IAGLDP+  K  
Sbjct: 61  QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 130 VYSYDPIG 137
           + S D IG
Sbjct: 121 ICSLDLIG 128

>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms Resolution Length = 204

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 19  PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFLMIFTI 76
           P S NGG  VA+ G D   IA D RL +     + +  K+F   H +   T     + T+
Sbjct: 3   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTL 62
Query: 77  TIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE-GKGCVYS 132
             +      +Y  +  + +   +  +++S  +Y +RF PY+   ++AG++ + GK  +  
Sbjct: 63  NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122
Query: 133 YDPIGHTERA 142
           +D IG  + A
Sbjct: 123 FDLIGCIDEA 132

>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle Length = 205

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 19  PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFLMIFTI 76
           P S NGG  VA+ G D   IA D RL +     + +  K+F   H +   T     + T+
Sbjct: 4   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTL 63
Query: 77  TIL---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE-GKGCVYS 132
             +      +Y  +  + +   +  +++S  +Y +RF PY+   ++AG++ + GK  +  
Sbjct: 64  NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 123
Query: 133 YDPIGHTERA 142
           +D IG  + A
Sbjct: 124 FDLIGCIDEA 133

>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From Archaeoglobus Fulgidus Length = 202

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 94/241 (39%), Gaps = 64/241 (26%)
Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI---------FTI 76
           TTV +   D  ++A++ R + G  I ++   K+     Y+      M          F  
Sbjct: 2   TTVGLVCKDGVVMATEKRATMGNFIASKAAKKI-----YQIADRMAMTTAGSVGDAQFLA 56
Query: 77  TILPFQMYLHEHNKVMSTT--SLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYD 134
            I+  +  L+E  +    T  ++A + S ++   R+FPY    +I G+D EGK  +YS D
Sbjct: 57  RIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGK-SIYSID 115
Query: 135 PIGHTERANFRXXXXXXXXXXXXXDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALS 194
           PIG                                       G I   D+  T      S
Sbjct: 116 PIG---------------------------------------GAIEEKDIVATG-----S 131
Query: 195 SKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
             LT    +   E+     + +++A+ +   A  +A +RD  +GDG+ +  IT+D   +Y
Sbjct: 132 GSLT---AYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQY 188
Query: 255 N 255
           +
Sbjct: 189 S 189

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
1iru_M	213	20S proteasome; cell cycle, immune response, prote	3e-64
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	1e-63
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	8e-58
1iru_J	205	20S proteasome; cell cycle, immune response, prote	2e-55
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	2e-46
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	1e-41
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	2e-41
1iru_H	205	20S proteasome; cell cycle, immune response, prote	2e-40
1iru_K	201	20S proteasome; cell cycle, immune response, prote	1e-39
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	2e-38
1iru_L	204	20S proteasome; cell cycle, immune response, prote	4e-36
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	6e-35
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	3e-32
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	3e-31
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	3e-30
1iru_N	219	20S proteasome; cell cycle, immune response, prote	2e-28
1iru_I	234	20S proteasome; cell cycle, immune response, prote	3e-27
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	2e-26
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	8e-24
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	1e-23
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	6e-23
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	6e-18
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	1e-16
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	4e-16
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	2e-14
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1iru_D	248	20S proteasome; cell cycle, immune response, prote	2e-04
1iru_C	261	20S proteasome; cell cycle, immune response, prote	5e-04
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	8e-04

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213

 Score =  199 bits (507), Expect = 3e-64
 Identities = 103/256 (40%), Positives = 152/256 (59%), Gaps = 55/256 (21%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM---- 72
           FSPY  NGGT +A+AG D+AI+ASDTRLS G++I+TR+  K +     + T   ++    
Sbjct: 2   FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCY-----KLTDKTVIGCSG 56

Query: 73  -----IFTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
                +    I+  ++ +++  +NK M+T ++A M+S ++Y +RFFPYY   II GLD E
Sbjct: 57  FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 116

Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
           GKG VYS+DP+G  +R +F+AGGS+ A+LQ LLDNQV                       
Sbjct: 117 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 153

Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
                           GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C 
Sbjct: 154 ----------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICI 197

Query: 246 ITKDGIKEYNFPLRKD 261
           +TK+GI+E    LRKD
Sbjct: 198 VTKEGIREETVSLRKD 213

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222

 Score =  197 bits (503), Expect = 1e-63
 Identities = 86/258 (33%), Positives = 130/258 (50%), Gaps = 48/258 (18%)

Query: 16  HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM--- 72
            F+PY DNGGT + +AG D+A++A DTR    Y+I +R + K+F         N +M   
Sbjct: 1   QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVF-----DCGDNIVMSAN 55

Query: 73  ------IFTITILPFQMYLHEHN---KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLD 123
                    +      +  +  +   K +S  S A+ I  ++YGKRFFPYY  TIIAGLD
Sbjct: 56  GFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD 115

Query: 124 PEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHD 183
            +GKG VYS+DP+G  ER   RAGG++ +L+   LDNQV                     
Sbjct: 116 EDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV--------------------- 154

Query: 184 LALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243
                     + K     G   +       + +E+ I +V+D+FT+A ER I  GDG+ +
Sbjct: 155 ----------NFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEI 204

Query: 244 CAITKDGIKEYNFPLRKD 261
             +TKDG+++  + L++D
Sbjct: 205 LIVTKDGVRKEFYELKRD 222

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204

 Score =  182 bits (463), Expect = 8e-58
 Identities = 49/253 (19%), Positives = 90/253 (35%), Gaps = 61/253 (24%)

Query: 19  PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYY------YRPTYNF 70
           P S NGG  VA+ G D   IA D RL +     + +  K+F   H +             
Sbjct: 3   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTL 62

Query: 71  LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE-GKGC 129
             +F        +Y  +  + +   +  +++S  +Y +RF PY+   ++AG++ + GK  
Sbjct: 63  NEMFRYKT---NLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPF 119

Query: 130 VYSYDPIGHT-ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTR 188
           +  +D IG   E  +F   G++   L  + ++                            
Sbjct: 120 IAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY-------------------------- 153

Query: 189 EINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK 248
                                 +  +  E     +  A   AA+RD  +G G  +  I K
Sbjct: 154 ----------------------EPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKK 191

Query: 249 DGIKEYNFPLRKD 261
           D + +    +R+D
Sbjct: 192 DEVVKRYLKMRQD 204

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205

 Score =  176 bits (448), Expect = 2e-55
 Identities = 54/257 (21%), Positives = 88/257 (34%), Gaps = 66/257 (25%)

Query: 18  SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM----- 72
           S  S NGG  +A+ G +   IA+D R      + T +  K+F            +     
Sbjct: 2   SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIF-----PMGDRLYIGLAGL 56

Query: 73  ----IFTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG 126
                     L F++ L+E    + +   +L  M++ ++Y KRF PYYT  +IAGLDP+ 
Sbjct: 57  ATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKT 116

Query: 127 -KGCVYSYDPIG-HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
            K  + S D IG      +F   G+    +  + ++                        
Sbjct: 117 FKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW---------------------- 154

Query: 185 ALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244
                                     +  +  +     +  A   A +RD  +G GV + 
Sbjct: 155 --------------------------EPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVH 188

Query: 245 AITKDGIKEYNFPLRKD 261
            I KD I       R D
Sbjct: 189 IIEKDKITTRTLKARMD 205

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266

 Score =  154 bits (392), Expect = 2e-46
 Identities = 36/269 (13%), Positives = 79/269 (29%), Gaps = 69/269 (25%)

Query: 10  ETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYN 69
            +P+ +   P    G + +++   +  IIA+D   S G  +      +L       P  +
Sbjct: 28  ASPMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLI------PVGD 80

Query: 70  FLMI----------FTITILPFQMYLHE-------HNKVMSTTSLAKMISIMMYGKR--F 110
             ++              +L   +  +          + +  + + + ++ +MY +R   
Sbjct: 81  NTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKM 140

Query: 111 FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK 170
            P + + I+AG+   G   +   + +G T  +   A G    +   LL   V        
Sbjct: 141 NPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV-------- 192

Query: 171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAA 230
                                                  D     ++ A   + +A    
Sbjct: 193 -----------------------------------DRESDIPKTTVQVAEEAIVNAMRVL 217

Query: 231 AERDIYTGDGVHLCAITKDGIKEYNFPLR 259
             RD  +     L  I K+    +   L+
Sbjct: 218 YYRDARSSRNFSLAIIDKNTGLTFKKNLQ 246

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205

 Score =  140 bits (356), Expect = 1e-41
 Identities = 38/246 (15%), Positives = 75/246 (30%), Gaps = 66/246 (26%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI--------- 73
            G + +AV   D  I+ +D+R + G  I  R   KL         ++ +           
Sbjct: 8   LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLT------RVHDKIWCCRSGSAADT 61

Query: 74  -FTITILPFQMYLHEH-NKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVY 131
                I+ + + L+       ST + A +   + Y  +        I+AG D + KG VY
Sbjct: 62  QAIADIVQYHLELYTSQYGTPSTETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVY 120

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
           +    G   +  +   GS    +    D                                
Sbjct: 121 TIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF----------------------------- 151

Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
                              +  +  E+ +  +K + + A + D  +G  + +  +T  G+
Sbjct: 152 -------------------RENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGV 192

Query: 252 KEYNFP 257
           +   F 
Sbjct: 193 ERLIFY 198

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233

 Score =  141 bits (357), Expect = 2e-41
 Identities = 35/261 (13%), Positives = 75/261 (28%), Gaps = 69/261 (26%)

Query: 18  SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI---- 73
            P    G + +++   +  IIA+D   S G  +      +L       P  +  ++    
Sbjct: 3   QPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLI------PVGDNTVVGISG 55

Query: 74  ------FTITILPFQMYLHE-------HNKVMSTTSLAKMISIMMYGKR--FFPYYTSTI 118
                     +L   +  +          + +  + + + ++ +MY +R    P + + I
Sbjct: 56  DISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAII 115

Query: 119 IAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGG 178
           +AG+   G   +   + +G T  +   A G    +   LL   V                
Sbjct: 116 VAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV---------------- 159

Query: 179 IRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTG 238
                                          D     ++ A   + +A      RD  + 
Sbjct: 160 ---------------------------DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSS 192

Query: 239 DGVHLCAITKDGIKEYNFPLR 259
               L  I K+    +   L+
Sbjct: 193 RNFSLAIIDKNTGLTFKKNLQ 213

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205

 Score =  137 bits (347), Expect = 2e-40
 Identities = 46/244 (18%), Positives = 76/244 (31%), Gaps = 67/244 (27%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           T +AV      ++ +D+R + G  I  R   KL       P ++ +              
Sbjct: 2   TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLT------PIHDRIFCCRSGSAADTQAV 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
              + +Q+  H    N+     + A +   M Y  R        IIAG DP+  G VYS 
Sbjct: 56  ADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSV 114

Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
              G   R +F  GGS  + +   +D                                  
Sbjct: 115 PMGGMMVRQSFAIGGSGSSYIYGYVDATY------------------------------- 143

Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                            +  +  E+ +    +A   A ERD  +G  + L AI + G++ 
Sbjct: 144 -----------------REGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVER 186

Query: 254 YNFP 257
               
Sbjct: 187 QVLL 190

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201

 Score =  135 bits (343), Expect = 1e-39
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 62/239 (25%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYY------YRPTYNFLMIFTI 76
             + + GPDY ++ASD   ++       +  K+F   +            T  F      
Sbjct: 3   YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMYG--KRFFPYYTSTIIAGLDPEGKGCVYSYD 134
            +   Q+Y   +   +S T+ A      +    +   PY+ + ++AG D      +Y  D
Sbjct: 63  NV---QLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMD 119

Query: 135 PIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALS 194
            +    +A F A G    L  ++LD                                   
Sbjct: 120 YLAALAKAPFAAHGYGAFLTLSILDRYY-------------------------------- 147

Query: 195 SKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                              +  E+A+ +++       +R I       +  I K+GI +
Sbjct: 148 ----------------TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHD 190

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264

 Score =  132 bits (335), Expect = 2e-38
 Identities = 12/242 (4%), Positives = 30/242 (12%), Gaps = 67/242 (27%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
               V    Y    +              +  +            + I            
Sbjct: 3   HMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVR------RGTTAIGIACKDGVVLAVDR 56

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
                           ++    + A    +               I  L    +  +   
Sbjct: 57  RITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEML 116

Query: 134 DPIG-HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
                  ++A  + GG     +  L+                                  
Sbjct: 117 AKKICDIKQAYTQHGGVRPFGVSLLIAG-------------------------------- 144

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                      +             +           A          + L         
Sbjct: 145 ---------IDK--NEARL-----FETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDI 188

Query: 253 EY 254
             
Sbjct: 189 TL 190

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204

 Score =  126 bits (319), Expect = 4e-36
 Identities = 45/241 (18%), Positives = 85/241 (35%), Gaps = 67/241 (27%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           TT+A       I+A+D+R +AG  I ++   K+           +L+           F 
Sbjct: 2   TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVI------EINPYLLGTMAGGAADCSFW 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
             +L  Q  ++E  + + +S  + +K+++ M+Y  +       T+I G D  G G +Y  
Sbjct: 56  ERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPG-LYYV 114

Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
           D  G+       + GS       ++D                                  
Sbjct: 115 DSEGNRISGATFSVGSGSVYAYGVMDR--------------------------------- 141

Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                   G+    +++      E+A  + + A   A  RD Y+G  V+L  + +DG   
Sbjct: 142 --------GYS--YDLEV-----EQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIR 186

Query: 254 Y 254
            
Sbjct: 187 V 187

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202

 Score =  123 bits (311), Expect = 6e-35
 Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 68/242 (28%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           TTV +   D  ++A++ R + G  I ++   K++         + + +          F 
Sbjct: 2   TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIY------QIADRMAMTTAGSVGDAQFL 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
             I+  +  L+E    +  +  ++A + S ++   R+FPY    +I G+D EG   +YS 
Sbjct: 56  ARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEG-KSIYSI 114

Query: 134 DPIG-HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
           DPIG   E  +  A GS       +L++                                
Sbjct: 115 DPIGGAIEEKDIVATGSGSLTAYGVLED-------------------------------- 142

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                     F     +       ++A+ +   A  +A +RD  +GDG+ +  IT+D   
Sbjct: 143 ---------RFT--PEIGV-----DEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFY 186

Query: 253 EY 254
           +Y
Sbjct: 187 QY 188

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287

 Score =  118 bits (298), Expect = 3e-32
 Identities = 49/245 (20%), Positives = 87/245 (35%), Gaps = 66/245 (26%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI-------- 73
            +G TT+A       I+A D+R +AG  + ++   K+           FL+         
Sbjct: 73  AHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVI------EINPFLLGTMAGGAAD 126

Query: 74  --FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC 129
             F  T L  Q  LHE    + +S  + +K++S ++Y  +       T+I G   +    
Sbjct: 127 CQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPT 186

Query: 130 VYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
           +Y  D  G   + +    GS       +LD+                             
Sbjct: 187 IYYVDSDGTRLKGDIFCVGSGQTFAYGVLDS----------------------------- 217

Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249
                        ++   ++       E A+ + K +  AAA RD Y+G  V+L  +T+D
Sbjct: 218 ------------NYK--WDLSV-----EDALYLGKRSILAAAHRDAYSGGSVNLYHVTED 258

Query: 250 GIKEY 254
           G   +
Sbjct: 259 GWIYH 263

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212

 Score =  113 bits (286), Expect = 3e-31
 Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 66/241 (27%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           TT+A       I+A D+R +AG  + ++   ++           FL+           F 
Sbjct: 2   TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVI------EINPFLLGTMAGGAADCQFW 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
            T L  Q  LHE    + +S  + +K++S ++Y  +       T+I G   +    +Y  
Sbjct: 56  ETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYV 115

Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
           D  G   + +    GS       +LD+                                 
Sbjct: 116 DSDGTRLKGDIFCVGSGQTFAYGVLDS--------------------------------- 142

Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                    ++   ++       E A+ + K +  AAA RD Y+G  V+L  +T+DG   
Sbjct: 143 --------NYK--WDLSV-----EDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 187

Query: 254 Y 254
           +
Sbjct: 188 H 188

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199

 Score =  111 bits (279), Expect = 3e-30
 Identities = 43/246 (17%), Positives = 71/246 (28%), Gaps = 66/246 (26%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM---------IFTI 76
           T +AV      ++ SD+R+SAG  +  R   KL                           
Sbjct: 2   TIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLS-----PLHQRIFCALSGSAADAQAIA 56

Query: 77  TILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYD 134
            +  +Q+ LH     +     + A ++  + Y  R        I+AG D    G VY   
Sbjct: 57  DMAAYQLELHGLELEEPPLVLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG-T 114

Query: 135 PIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALS 194
             G   R  F  GGS  + +   +D                                   
Sbjct: 115 MGGMLIRQPFTIGGSGSSYIYGYVDA---------------------------------- 140

Query: 195 SKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
                   ++    +       E+      +A T A  RD  +G  ++L  IT  G+   
Sbjct: 141 -------AYK--PGMTP-----EECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHR 186

Query: 255 NFPLRK 260
                +
Sbjct: 187 VILGDE 192

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219

 Score =  107 bits (269), Expect = 2e-28
 Identities = 36/244 (14%), Positives = 67/244 (27%), Gaps = 68/244 (27%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI---------- 73
           G + + V      +IA+D   S G     R  S++          N  M+          
Sbjct: 8   GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIM------RVNNSTMLGASGDYADFQ 61

Query: 74  FTITILPFQMYLHE---HNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKG 128
           +   +L   +   E        S  ++   ++  MY +R    P + + +I G       
Sbjct: 62  YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGE-S 120

Query: 129 CVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTR 188
            +   D +G    A   A G    L Q LL                              
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLRE---------------------------- 152

Query: 189 EINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK 248
                            Q  + +      +A  +V+        RD  + +      +T+
Sbjct: 153 -------------VLEKQPVLSQ-----TEARDLVERCMRVLYYRDARSYNRFQTATVTE 194

Query: 249 DGIK 252
            G++
Sbjct: 195 KGVE 198

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234

 Score =  103 bits (260), Expect = 3e-27
 Identities = 37/241 (15%), Positives = 79/241 (32%), Gaps = 68/241 (28%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           T   V   D  ++ +DTR + G  +  +  SK+            +             T
Sbjct: 2   TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIH------FISPNIYCCGAGTAADTDMT 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
             ++   + LH     ++    +  +M+  M++  R +    + ++ G+D  G   +YS 
Sbjct: 56  TQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGY-IGAALVLGGVDVTG-PHLYSI 113

Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
            P G T++  +   GS      A+ +++                        +  E    
Sbjct: 114 YPHGSTDKLPYVTMGSGSLAAMAVFEDK--------------------FRPDMEEE---- 149

Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                                   +A ++V +A  A    D+ +G  + LC I+K+ +  
Sbjct: 150 ------------------------EAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDF 185

Query: 254 Y 254
            
Sbjct: 186 L 186

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198

 Score =  100 bits (252), Expect = 2e-26
 Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 71/244 (29%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFL--------MIF 74
             + +   D  I+AS   ++ G ++      K      H         +         + 
Sbjct: 3   IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTL-------MSFAGEAGDTVQ 55

Query: 75  TITILPFQMYLHE--HNKVMSTTSLAKMISIMMYG--KRFFPYYTSTIIAGLDPEGKGC- 129
               +   + L+    +  +S  +++  +   +    +   PY  + +I G D +     
Sbjct: 56  FAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPE 115

Query: 130 VYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
           +Y  D +G      + A G SG    +LLD+                             
Sbjct: 116 LYQIDYLGTKVELPYGAHGYSGFYTFSLLDH----------------------------- 146

Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249
                        +R   ++       E+ + ++K       +R      GV +  + KD
Sbjct: 147 ------------HYR--PDMTT-----EEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKD 187

Query: 250 GIKE 253
           GI++
Sbjct: 188 GIRQ 191

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222

 Score = 94.6 bits (236), Expect = 8e-24
 Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 68/241 (28%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           T V V   +  +IA+DTR + G  +  +  +KL            +              
Sbjct: 2   TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLH------RISPKIWCAGAGTAADTEAV 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
             ++   + LH    ++     S  +M+   ++  +        I+AG+DP G   ++S 
Sbjct: 56  TQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKYQ-GHIGAYLIVAGVDPTG-SHLFSI 113

Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
              G T+   + + GS      A+L++                                 
Sbjct: 114 HAHGSTDVGYYLSLGSGSLAAMAVLES--------------------------------- 140

Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                    ++  +++ K     E+AI +  DA  A    D+ +G  V +C +      E
Sbjct: 141 --------HWK--QDLTK-----EEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAE 185

Query: 254 Y 254
           Y
Sbjct: 186 Y 186

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 38/239 (15%), Positives = 83/239 (34%), Gaps = 68/239 (28%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI---------- 73
           G TTV +   D  I+A++ R++    I  +   KLF          +  +          
Sbjct: 8   GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLF------QIDTYTGMTIAGLVGDAQ 61

Query: 74  FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVY 131
             +  +  ++ L+       M   ++A ++S M+   ++ PY    ++ G+D      V+
Sbjct: 62  VLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPH--VF 119

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
           S D  G +    + + GS    +  +L++                               
Sbjct: 120 SIDAAGGSVEDIYASTGSGSPFVYGVLES------------------------------- 148

Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                      +   E +      +++ + +V  A +AA +RD  +G  + +  IT+  
Sbjct: 149 ----------QYS--EKMT-----VDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD 190

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261

 Score = 93.6 bits (233), Expect = 6e-23
 Identities = 42/243 (17%), Positives = 80/243 (32%), Gaps = 68/243 (27%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI---------- 73
           G T V V   +  +IA+DTR + G  +  +  +KL            +            
Sbjct: 29  GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLH------RISPKIWCAGAGTAADTE 82

Query: 74  FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVY 131
               ++   + LH    ++     S  +M+   ++ K         I+AG+DP G   ++
Sbjct: 83  AVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLF-KYQGHIGAYLIVAGVDPTG-SHLF 140

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
           S    G T+   + + GS      A+L++                               
Sbjct: 141 SIHAHGSTDVGYYLSLGSGSLAAMAVLES------------------------------- 169

Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
                      ++  +++       E+AI +  DA  A    D+ +G  V +C +     
Sbjct: 170 ----------HWK--QDLT-----KEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKD 212

Query: 252 KEY 254
            EY
Sbjct: 213 AEY 215

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291

 Score = 80.3 bits (198), Expect = 6e-18
 Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 83/260 (31%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI---------- 73
           G T VA+  P   ++A D R + G  I  R+  K++       T ++             
Sbjct: 57  GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVY------ITDDYTATGIAGTAAVAV 110

Query: 74  FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRF---FPYYTSTIIAGLD----- 123
               +   ++  +E      ++       ++IM+ G             ++AG D     
Sbjct: 111 EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD 170

Query: 124 PEGKGCVYSYDPIGHT--ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRT 181
           P+  G + S+D  G    E   ++A GS     ++ +                       
Sbjct: 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKK--------------------- 209

Query: 182 HDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
                                +   +  D      +  + V  +A   AA+ D  TG   
Sbjct: 210 --------------------LYS--QVTDG-----DSGLRVAVEALYDAADDDSATGGPD 242

Query: 242 HL-------CAITKDGIKEY 254
            +         I  DG  + 
Sbjct: 243 LVRGIFPTAVIIDADGAVDV 262

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 40/244 (16%), Positives = 72/244 (29%), Gaps = 74/244 (30%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI--------- 73
           T   +   D  I+ +DTR +    +  +   K+               +           
Sbjct: 2   TIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPK---------IYCCGAGVAADT 52

Query: 74  -FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCV 130
             T  +   +M LH     +     ++ +++   ++  +      S ++ G+D  G   +
Sbjct: 53  EMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRYQ-GHVGASLVVGGVDLNG-PQL 110

Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
           Y   P G   R  F A GS      ALL+++                        +T E 
Sbjct: 111 YEVHPHGSYSRLPFTALGSGQGAAVALLEDR--------------------FQPNMTLE- 149

Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                                       A  ++ +A TA    D+ +G  V  C IT  G
Sbjct: 150 ---------------------------AAQELLVEAITAGILSDLGSGGNVDACVITAGG 182

Query: 251 IKEY 254
            K  
Sbjct: 183 AKLQ 186

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294

 Score = 75.4 bits (185), Expect = 4e-16
 Identities = 41/260 (15%), Positives = 76/260 (29%), Gaps = 83/260 (31%)

Query: 24  GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFL----------MI 73
           G T VA+      ++A D R + G  I +R+   ++       T  +            I
Sbjct: 65  GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVY------VTDEYSAAGIAGTAGIAI 118

Query: 74  FTITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYY---TSTIIAGLDPEG-- 126
             + +   ++  +E      ++    A  ++ M+ G             ++ G D +   
Sbjct: 119 ELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADD 178

Query: 127 ---KGCVYSYDPIGH--TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRT 181
               G + SYD +G    ERA + A GS     ++ L                       
Sbjct: 179 ESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK--------------------- 217

Query: 182 HDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTG--- 238
                                +    + D+     E A+    ++   AA+ D  TG   
Sbjct: 218 --------------------IYS--PDSDE-----ETALRAAIESLYDAADDDSATGGPD 250

Query: 239 ----DGVHLCAITKDGIKEY 254
                      IT+ G    
Sbjct: 251 LTRGIYPTAVTITQAGAVHV 270

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 40/258 (15%), Positives = 75/258 (29%), Gaps = 83/258 (32%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI----------FT 75
           T VA+      ++A D R + G  I +R+  K++       T  +               
Sbjct: 2   TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVY------VTDEYSAAGIAGTAGIAIEL 55

Query: 76  ITILPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYY---TSTIIAGLDPEG---- 126
           + +   ++  +E      ++    A  ++ M+ G             ++ G D +     
Sbjct: 56  VRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115

Query: 127 -KGCVYSYDPIGH--TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHD 183
             G + SYD +G    ERA + A GS     ++ L                         
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKK----------------------- 152

Query: 184 LALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD---- 239
                              +    + D+     E A+    ++   AA+ D  TG     
Sbjct: 153 ------------------IYS--PDSDE-----ETALRAAIESLYDAADDDSATGGPDLT 187

Query: 240 ---GVHLCAITKDGIKEY 254
                    IT+ G    
Sbjct: 188 RGIYPTAVTITQAGAVHV 205

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Length = 259

 Score = 49.2 bits (117), Expect = 3e-07
 Identities = 19/150 (12%), Positives = 51/150 (34%), Gaps = 16/150 (10%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRP---TYNFLMIFTITIL 79
            G + V +   D  +  ++   +A + +      +L+D   +        F  +    I+
Sbjct: 26  RGRSVVVLTFRDGVLFVAENPSTALHKVS-----ELYDRLGFAAVGKYNEFENLRRAGIV 80

Query: 80  PFQMYLHEHNKV-MSTTSLAKMISIMM---YGKRFFPYYTSTIIAGL---DPEGKGCVYS 132
              M  + +++  ++  SLA   +  +   + ++  PY     +A +          +Y 
Sbjct: 81  HADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYR 140

Query: 133 YDPIG-HTERANFRAGGSSGALLQALLDNQ 161
               G   +  +F   G +   +   +   
Sbjct: 141 ITYDGSIVDEQHFVVMGGTTEPIATAMRES 170

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 44/257 (17%), Positives = 78/257 (30%), Gaps = 62/257 (24%)

Query: 37  IIASDTRLSAGYNIYT---REQSKLFDHYY---YRPTYNFLM--IFTITILP---FQMYL 85
           II S   +S    ++     +Q ++   +     R  Y FLM  I T    P    +MY+
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 86  HEHNKVMSTTSLAKMISIMMYGKRFFPYYT-STIIAGLDPE-----------GKGC---- 129
            + +++ +   +    ++     R  PY      +  L P            GK      
Sbjct: 114 EQRDRLYNDNQVFAKYNV----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 130 -VYSYDPIGHTERA----NFRAGGSSGALLQAL--------------LDNQVGIIQ--HS 168
              SY      +      N +   S   +L+ L               D+   I    HS
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 169 SKQMKSVLGGIRTHDLAL--------TREINALSSKLTILLGFRNQENVDKTPVPLEKAI 220
            +     L   + ++  L         +  NA +    ILL  R ++  D         I
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 221 SVVK--DAFTAAAERDI 235
           S+       T    + +
Sbjct: 290 SLDHHSMTLTPDEVKSL 306

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C* Length = 248

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 45/143 (31%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTIT----- 77
            G T V V G D  ++  + +            +KL D    R       I  +      
Sbjct: 28  KGSTAVGVRGRDIVVLGVEKKSV----------AKLQDERTVRK------ICALDDNVCM 71

Query: 78  ----ILP------------FQMYLHEHNKVMSTTSLAKMISIMM------YGKRFFPYYT 115
               +               Q +       ++   + + I+ +        G+R  P+  
Sbjct: 72  AFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRR--PFGI 129

Query: 116 STIIAGLDPEGKGCVYSYDPIGH 138
           S +I G D +G   +Y  DP G 
Sbjct: 130 SALIVGFDFDGTPRLYQTDPSGT 152

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B Length = 261

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 44/143 (30%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTIT----- 77
           + GT + +   D  ++A++ R             KL D  ++        I+ +      
Sbjct: 30  HAGTCLGILANDGVLLAAERRNI----------HKLLDEVFFSEK-----IYKLNEDMAC 74

Query: 78  ----ILP------------FQMYLHEHNKVMSTTSLAKMISIMM------YGKRFFPYYT 115
               I               Q YL ++ + +    L   +  +        GKR  P+  
Sbjct: 75  SVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKR--PFGV 132

Query: 116 STIIAGLDPEGKGCVYSYDPIGH 138
           S +  G D      +Y  DP G+
Sbjct: 133 SLLYIGWDKHYGFQLYQSDPSGN 155

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ... Length = 242

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 51/150 (34%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTIT---- 77
             G T + +A  +  ++  + R            S L +            I  I     
Sbjct: 24  KLGSTAIGIATKEGVVLGVEKRA----------TSPLLESDSIEK------IVEIDRHIG 67

Query: 78  -----ILP------------FQMYLHEHNKVMSTTSLAKMISIMM------------YGK 108
                +                 +   +++ ++  SL + +  +                
Sbjct: 68  CAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMS 127

Query: 109 RFFPYYTSTIIAGLDPEGKGCVYSYDPIGH 138
           R  P+  + +IAG D +    ++  +P G 
Sbjct: 128 R--PFGVALLIAGHDADDGYQLFHAEPSGT 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
1iru_M	213	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_M	222	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_J	205	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_J	204	20S proteasome; multicatalytic proteinase, protein	100.0
1yar_H	217	Proteasome beta subunit; proteasome 20S, PA26 prot	100.0
3h4p_a	219	Proteasome subunit beta; core particle, cytoplasm,	100.0
1g0u_M	266	Proteasome component PRE4; ubiquitin, degradation,	100.0
1j2q_H	202	Proteasome beta subunit; ubiquitin, CP, hydrolase;	100.0
1ryp_H	205	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_N	233	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_K	198	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_H	205	20S proteasome; cell cycle, immune response, prote	100.0
1iru_N	219	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_A	243	20S proteasome; multicatalytic proteinase, protein	100.0
3nzj_K	287	Proteasome component PRE2; ubiquitin, protein degr	100.0
1iru_L	204	20S proteasome; cell cycle, immune response, prote	100.0
1ryp_L	212	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_K	201	20S proteasome; cell cycle, immune response, prote	100.0
1iru_A	246	20S proteasome; cell cycle, immune response, prote	100.0
3unf_H	234	Proteasome subunit beta type-10; antigen presentat	100.0
3nzj_H	261	Proteasome component PUP1; ubiquitin, protein degr	100.0
1ryp_I	222	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_C	244	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_C	261	20S proteasome; cell cycle, immune response, prote	100.0
1iru_B	233	20S proteasome; cell cycle, immune response, prote	100.0
1yar_A	233	Proteasome alpha subunit; proteasome 20S, PA26 pro	100.0
3unf_N	199	Proteasome subunit beta type-9; antigen presentati	100.0
1ryp_E	242	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_I	234	20S proteasome; cell cycle, immune response, prote	100.0
1iru_E	241	20S proteasome; cell cycle, immune response, prote	100.0
1iru_G	254	20S proteasome; cell cycle, immune response, prote	100.0
1q5q_H	235	Proteasome beta-type subunit 1; proteasome assembl	100.0
1ryp_G	244	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_D	241	20S proteasome; multicatalytic proteinase, protein	100.0
1q5r_H	294	Proteasome beta-type subunit 1; proteasome assembl	100.0
3h4p_A	264	Proteasome subunit alpha; core particle, cytoplasm	100.0
3nzj_F	288	Proteasome component C1; ubiquitin, protein degrad	100.0
1ryp_F	233	20S proteasome; multicatalytic proteinase, protein	100.0
1ryp_B	250	20S proteasome; multicatalytic proteinase, protein	100.0
1iru_D	248	20S proteasome; cell cycle, immune response, prote	100.0
1j2p_A	246	Alpha-ring, proteasome alpha subunit; hydrolase; 2	100.0
2jay_A	291	Proteasome; hydrolase; 1.99A {Mycobacterium tuberc	100.0
1iru_F	263	20S proteasome; cell cycle, immune response, prote	100.0
3mi0_A	248	Proteasome subunit alpha; enzyme inhibitors, lacto	100.0
1q5q_A	259	Proteasome alpha-type subunit 1; proteasome assemb	100.0
2z3b_A	180	ATP-dependent protease HSLV; N-terminal nucleophIl	99.98
1g3k_A	174	ATP-dependent protease HSLV; hydrolase; 1.90A {Hae	99.97
1m4y_A	171	ATP-dependent protease HSLV; N-terminal catalytic	99.97

>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L

Probab=100.00  E-value=4e-48  Score=337.32  Aligned_cols=202  Identities=52%  Similarity=0.919  Sum_probs=189.5

Q ss_pred             cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322         16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY   84 (261)
Q Consensus        16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y   84 (261)
                      .|+||+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|
T Consensus         1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~   75 (213)
T 1iru_M            1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLT-----DKTVIGCSGFHGDCLTLTKIIEARLKMY   75 (213)
T ss_dssp             CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcC-----CCEEEEccccHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999889999999999     99999876           888899999


Q ss_pred             hhhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         85 LHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        85 ~~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      +++++++++++.+|+++++++|++|++||+|++||||||++|+|+||++||.|++.++++.|+|+|+.+++++||+.+  
T Consensus        76 ~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~--  153 (213)
T 1iru_M           76 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV--  153 (213)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHT--
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcc--
Confidence            999999999999999999999998899999999999999888899999999999999999999999999999999987  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                           +.+++.+.|+++||+|||++++++||..+.+||+.++++++|+
T Consensus       154 -------------------------------------~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~  196 (213)
T 1iru_M          154 -------------------------------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRIC  196 (213)
T ss_dssp             -------------------------------------TCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEE
T ss_pred             -------------------------------------ccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEE
Confidence                                                 2222223368999999999999999999999999999999999


Q ss_pred             EEEcCCEEEEeeccCCC
Q psy10322        245 AITKDGIKEYNFPLRKD  261 (261)
Q Consensus       245 ~itkdg~~~~~~~~r~~  261 (261)
                      +|++||++++.+++|+|
T Consensus       197 vi~~~g~~~~~~~~r~d  213 (213)
T 1iru_M          197 IVTKEGIREETVSLRKD  213 (213)
T ss_dssp             EEETTEEEEEEEECCCC
T ss_pred             EEcCCCeEEEEeecCCC
Confidence            99999999999999998

>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...

Probab=100.00  E-value=1.5e-47  Score=336.84  Aligned_cols=202  Identities=45%  Similarity=0.783  Sum_probs=189.3

Q ss_pred             cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322         16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY   84 (261)
Q Consensus        16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y   84 (261)
                      .|+||+++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|
T Consensus         1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~   75 (222)
T 1ryp_M            1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCG-----DNIVMSANGFAADGDALVKRFKNSVKWY   75 (222)
T ss_dssp             CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeC-----CCEEEEccccHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999988999999999999     99999876           888899999


Q ss_pred             hhhcC-CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhh
Q psy10322         85 LHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVG  163 (261)
Q Consensus        85 ~~~~g-~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~  163 (261)
                      +++++ ++|+++.+|+++++++|.+|++||+|++||||||++|+|+||++||.|++.++++.|+|+|+.+++++||+.+ 
T Consensus        76 ~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~-  154 (222)
T 1ryp_M           76 HFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV-  154 (222)
T ss_dssp             HHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHT-
T ss_pred             HHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccc-
Confidence            99999 9999999999999999999999999999999999888899999999999999999999999999999999987 


Q ss_pred             cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCC--------CCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy10322        164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQEN--------VDKTPVPLEKAISVVKDAFTAAAERDI  235 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~eea~~l~~~al~~~~~rd~  235 (261)
                                                            +++|+..        .|+++||+|||++++++||..+.+||+
T Consensus       155 --------------------------------------~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~  196 (222)
T 1ryp_M          155 --------------------------------------NFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHI  196 (222)
T ss_dssp             --------------------------------------SCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBT
T ss_pred             --------------------------------------ccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence                                                  2222111        268999999999999999999999999


Q ss_pred             CCCCcEEEEEEEcCCEEEEeeccCCC
Q psy10322        236 YTGDGVHLCAITKDGIKEYNFPLRKD  261 (261)
Q Consensus       236 ~~g~~v~i~~itkdg~~~~~~~~r~~  261 (261)
                      .+|++++|++|++||++++.+++|+|
T Consensus       197 ~sg~~i~v~vi~~~g~~~~~~~~r~d  222 (222)
T 1ryp_M          197 QVGDGLEILIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             TCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred             cCCCcEEEEEEcCCCeEEEEeeccCC
Confidence            99999999999999999999999998

>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I

Probab=100.00  E-value=1.7e-45  Score=318.92  Aligned_cols=192  Identities=27%  Similarity=0.413  Sum_probs=182.2

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      ++||+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (205)
T 1iru_J            1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMG-----DRLYIGLAGLATDVQTVAQRLKFRLNLYE   75 (205)
T ss_dssp             -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECS-----TTEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeC-----CCEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999998888999999999     99999886           8888999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcC-CCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhh
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVG  163 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~  163 (261)
                      ++++++++++.+|+++++++|.+|+.||+|++||||||+ +++|+||++||.|++.+ ..|.|+|+|+.+++++||+.| 
T Consensus        76 ~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~-  154 (205)
T 1iru_J           76 LKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW-  154 (205)
T ss_dssp             HHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC-
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc-
Confidence            999999999999999999999988889999999999996 57799999999999855 567999999999999999986 


Q ss_pred             cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322        164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL  243 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i  243 (261)
                                                                     +++||+|||++++++||..+.+||+.++++++|
T Consensus       155 -----------------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v  187 (205)
T 1iru_J          155 -----------------------------------------------EPNMDPDHLFETISQAMLNAVDRDAVSGMGVIV  187 (205)
T ss_dssp             -----------------------------------------------CSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEE
T ss_pred             -----------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCcccCCceEE
Confidence                                                           789999999999999999999999999999999


Q ss_pred             EEEEcCCEEEEeeccCCC
Q psy10322        244 CAITKDGIKEYNFPLRKD  261 (261)
Q Consensus       244 ~~itkdg~~~~~~~~r~~  261 (261)
                      ++|++||++++.+++|+|
T Consensus       188 ~vi~~~g~~~~~~~~r~d  205 (205)
T 1iru_J          188 HIIEKDKITTRTLKARMD  205 (205)
T ss_dssp             EEEESSBEEEEEBCCCCC
T ss_pred             EEEcCCCEEEEEeecCCC
Confidence            999999999999999998

>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...

Probab=100.00  E-value=5.9e-44  Score=309.08  Aligned_cols=190  Identities=25%  Similarity=0.437  Sum_probs=179.3

Q ss_pred             cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322         18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH   86 (261)
Q Consensus        18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~   86 (261)
                      +||+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+      |++|+++           +++.+++.|++
T Consensus         2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~i~~~~aG~~aD~~~l~~~~~~~~~~~~~   75 (204)
T 1ryp_J            2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG------HVFLGITGLATDVTTLNEMFRYKTNLYKL   75 (204)
T ss_dssp             CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET------TEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC------CEEEEeeEcHHHHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999999999998888999999998      5777765           88889999999


Q ss_pred             hcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcC-CCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhc
Q psy10322         87 EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        87 ~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      +++++++++.+|+++++++|.+|..||+|++||||||+ +++|+||++||.|++.+ ..|.|+|+|+.+++++||+.|  
T Consensus        76 ~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--  153 (204)
T 1ryp_J           76 KEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--  153 (204)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--
T ss_pred             ccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--
Confidence            99999999999999999999998889999999999996 57899999999999855 478999999999999999986  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                    +++||.|||++++++||..+.+||+.++++++|+
T Consensus       154 ----------------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~  187 (204)
T 1ryp_J          154 ----------------------------------------------EPNLEPEDLFETISQALLNAADRDALSGWGAVVY  187 (204)
T ss_dssp             ----------------------------------------------CSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEE
T ss_pred             ----------------------------------------------CCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEE
Confidence                                                          7899999999999999999999999999999999


Q ss_pred             EEEcCCEEEEeeccCCC
Q psy10322        245 AITKDGIKEYNFPLRKD  261 (261)
Q Consensus       245 ~itkdg~~~~~~~~r~~  261 (261)
                      +|++||++++.+++|+|
T Consensus       188 vi~~~g~~~~~~~~r~d  204 (204)
T 1ryp_J          188 IIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             EEESSCEEEEEECCCCC
T ss_pred             EEcCCCEEEEEeecCCC
Confidence            99999999999999998

>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H

Probab=100.00  E-value=5.1e-43  Score=306.94  Aligned_cols=182  Identities=23%  Similarity=0.387  Sum_probs=166.9

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      |+|++.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (217)
T 1yar_H            1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQID-----TYTGMTIAGLVGDAQVLVRYMKAELELYR   75 (217)
T ss_dssp             --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeC-----CCEEEEeCcCHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999899999999999999     99999876           8889999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++++++.+|+++++++|++|++||+|++|||||| + +|+||++||+|++.++++.|+|+|+.+++++||+.|   
T Consensus        76 ~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~---  150 (217)
T 1yar_H           76 LQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY---  150 (217)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC---
T ss_pred             HHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhc---
Confidence            99999999999999999999998899999999999999 4 599999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||++++++||..+.+||..++++++|++
T Consensus       151 ---------------------------------------------~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~v  185 (217)
T 1yar_H          151 ---------------------------------------------SEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAV  185 (217)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEE
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Confidence                                                         78999999999999999999999999999999999


Q ss_pred             EEc-CCEEE
Q psy10322        246 ITK-DGIKE  253 (261)
Q Consensus       246 itk-dg~~~  253 (261)
                      |++ +|++.
T Consensus       186 i~~~~g~~~  194 (217)
T 1yar_H          186 ITRKDGYVQ  194 (217)
T ss_dssp             EETTTEEEE
T ss_pred             EECCCCEEE
Confidence            999 88664

>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.3e-42  Score=303.49  Aligned_cols=178  Identities=29%  Similarity=0.477  Sum_probs=169.5

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      |+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++++++++
T Consensus         1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~   75 (219)
T 3h4p_a            1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKID-----DYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNI   75 (219)
T ss_dssp             -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEE-----TTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred             CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEec-----CCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            789999999999999999999999899999999999999     99999886           88889999999999999


Q ss_pred             CHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecC-EEEEecChHHHHHHHHhhhhcccccccc
Q psy10322         93 STTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN-FRAGGSSGALLQALLDNQVGIIQHSSKQ  171 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~  171 (261)
                      +++.+|+++++++|++|++||+|++||||||++++|+||++||+|++.+++ +.|+|+|+.+++++||+.|         
T Consensus        76 ~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~---------  146 (219)
T 3h4p_a           76 PPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY---------  146 (219)
T ss_dssp             CHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC---------
T ss_pred             CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc---------
Confidence            999999999999999889999999999999986779999999999999999 9999999999999999976         


Q ss_pred             hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322        172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI  251 (261)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~  251 (261)
                                                             +++||.|||++++++||..+.+||..+|++++|++|++||+
T Consensus       147 ---------------------------------------~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~  187 (219)
T 3h4p_a          147 ---------------------------------------DRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGV  187 (219)
T ss_dssp             ---------------------------------------CTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEE
T ss_pred             ---------------------------------------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCe
Confidence                                                   78999999999999999999999999999999999999997


Q ss_pred             EEE
Q psy10322        252 KEY  254 (261)
Q Consensus       252 ~~~  254 (261)
                      ++.
T Consensus       188 ~~l  190 (219)
T 3h4p_a          188 KIF  190 (219)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            654

>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*

Probab=100.00  E-value=3.4e-42  Score=310.97  Aligned_cols=191  Identities=18%  Similarity=0.233  Sum_probs=175.7

Q ss_pred             CcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHH
Q psy10322         11 TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITIL   79 (261)
Q Consensus        11 ~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~   79 (261)
                      .|++|.|+|+. +|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.
T Consensus        29 ~~~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~lr~  102 (266)
T 1g0u_M           29 SPMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG-----DNTVVGISGDISDMQHIERLLKD  102 (266)
T ss_dssp             -----CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECT-----TSEEEEEEEEHHHHHHHHHHHHH
T ss_pred             cchhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcC-----CCEEEEeccCHHHHHHHHHHHHH
Confidence            45799999987 6999999999999999999999999899999999999999     99999876           8888


Q ss_pred             HHHhhhh-----hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChH
Q psy10322         80 PFQMYLH-----EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGA  152 (261)
Q Consensus        80 ~~~~y~~-----~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~  152 (261)
                      +++.|++     +++++++++.+|+++++++|.+|  ++||+|++||||||++++|+||++||.|++.++++.|+|+|+.
T Consensus       103 ~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~  182 (266)
T 1g0u_M          103 LVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH  182 (266)
T ss_dssp             HHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred             HHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHH
Confidence            9999998     89999999999999999999877  6899999999999987689999999999999999999999999


Q ss_pred             HHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC-----CCCHHHHHHHHHHHH
Q psy10322        153 LLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT-----PVPLEKAISVVKDAF  227 (261)
Q Consensus       153 ~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~eea~~l~~~al  227 (261)
                      +++++||+.|                                                ++     +||+|||++++++||
T Consensus       183 ~a~~~Le~~~------------------------------------------------~~~~~~~~ms~eeA~~la~~al  214 (266)
T 1g0u_M          183 MANPLLRKVV------------------------------------------------DRESDIPKTTVQVAEEAIVNAM  214 (266)
T ss_dssp             THHHHHTTTC------------------------------------------------SSGGGGGGCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhh------------------------------------------------cccccCCCCCHHHHHHHHHHHH
Confidence            9999999987                                                55     999999999999999


Q ss_pred             HHHHhcccCCCCcEEEEEEEcC-CEEEEe
Q psy10322        228 TAAAERDIYTGDGVHLCAITKD-GIKEYN  255 (261)
Q Consensus       228 ~~~~~rd~~~g~~v~i~~itkd-g~~~~~  255 (261)
                      ..+.+||+.+|++++|++|++| |++...
T Consensus       215 ~~a~~rd~~sg~~i~v~vI~k~~g~~~~~  243 (266)
T 1g0u_M          215 RVLYYRDARSSRNFSLAIIDKNTGLTFKK  243 (266)
T ss_dssp             HHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred             HHHHHhcCCCCCcEEEEEEECCCCeEEcC
Confidence            9999999999999999999999 887643

>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4

Probab=100.00  E-value=3.1e-41  Score=291.59  Aligned_cols=175  Identities=24%  Similarity=0.421  Sum_probs=167.4

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++|+
T Consensus         1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (202)
T 1j2q_H            1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIA-----DRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPT   75 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcC-----CCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            68999999999999999999999889999999999999     99999876           888999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecC-EEEEecChHHHHHHHHhhhhcccccccch
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN-FRAGGSSGALLQALLDNQVGIIQHSSKQM  172 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~~  172 (261)
                      ++.+|+++++++|.+|++||+|++||||||+ ++|+||++||.|++.+++ +.|+|+|+.+++++||+.|          
T Consensus        76 ~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~----------  144 (202)
T 1j2q_H           76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF----------  144 (202)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhc----------
Confidence            9999999999999988999999999999997 569999999999999999 9999999999999999987          


Q ss_pred             hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEE
Q psy10322        173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK  252 (261)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~  252 (261)
                                                            +++||.|||++++++||..+.+||..++++++|++|+++|++
T Consensus       145 --------------------------------------~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~  186 (202)
T 1j2q_H          145 --------------------------------------TPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFY  186 (202)
T ss_dssp             --------------------------------------CTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEE
T ss_pred             --------------------------------------CCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeE
Confidence                                                  789999999999999999999999999999999999999976


Q ss_pred             E
Q psy10322        253 E  253 (261)
Q Consensus       253 ~  253 (261)
                      .
T Consensus       187 ~  187 (202)
T 1j2q_H          187 Q  187 (202)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...

Probab=100.00  E-value=3.2e-41  Score=292.42  Aligned_cols=184  Identities=21%  Similarity=0.302  Sum_probs=173.3

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      ++++ .+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         3 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   76 (205)
T 1ryp_H            3 KGEV-SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVH-----DKIWCCRSGSAADTQAIADIVQYHLELYT   76 (205)
T ss_dssp             TTCC-BCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCC-cCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcC-----CCEEEEccCCHHHHHHHHHHHHHHHHHHH
Confidence            4554 57999999999999999999999999888899999999999     99999876           8889999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      +++++ ++++.+|+++++++|.+|.+ |++++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|   
T Consensus        77 ~~~~~-~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~---  151 (205)
T 1ryp_H           77 SQYGT-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF---  151 (205)
T ss_dssp             HHHSS-CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC---
T ss_pred             HHhCC-CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc---
Confidence            99999 99999999999999988766 99999999999766799999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||++++++||..+.+||+.+|++++|++
T Consensus       152 ---------------------------------------------~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~v  186 (205)
T 1ryp_H          152 ---------------------------------------------RENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVV  186 (205)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEE
T ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEE
Confidence                                                         78999999999999999999999999999999999


Q ss_pred             EEcCCEEEEee
Q psy10322        246 ITKDGIKEYNF  256 (261)
Q Consensus       246 itkdg~~~~~~  256 (261)
                      |++||++++.+
T Consensus       187 i~~~g~~~~~~  197 (205)
T 1ryp_H          187 LTAAGVERLIF  197 (205)
T ss_dssp             EETTEEEEEEE
T ss_pred             EcCCCEEEEEe
Confidence            99999988776

>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...

Probab=100.00  E-value=1.4e-41  Score=300.47  Aligned_cols=185  Identities=18%  Similarity=0.218  Sum_probs=172.9

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      .+|+ .+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         2 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (233)
T 1ryp_N            2 QQPI-VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG-----DNTVVGISGDISDMQHIERLLKDLVTENA   75 (233)
T ss_dssp             CCCC-EEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEET-----TTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc-cCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeC-----CCEEEEccccHHHHHHHHHHHHHHHHHHh
Confidence            3454 56999999999999999999999999999999999999999     99999876           8888999999


Q ss_pred             h-----hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHH
Q psy10322         86 H-----EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALL  158 (261)
Q Consensus        86 ~-----~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~L  158 (261)
                      +     +++++|+++.+|+++++++|.+|  ++||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++|
T Consensus        76 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~L  155 (233)
T 1ryp_N           76 YDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL  155 (233)
T ss_dssp             TTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHH
T ss_pred             hccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHH
Confidence            8     89999999999999999999877  6899999999999987789999999999999999999999999999999


Q ss_pred             HhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC-----CCCHHHHHHHHHHHHHHHHhc
Q psy10322        159 DNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT-----PVPLEKAISVVKDAFTAAAER  233 (261)
Q Consensus       159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~eea~~l~~~al~~~~~r  233 (261)
                      |+.|                                                ++     +||+|||++++++||..+.+|
T Consensus       156 e~~~------------------------------------------------~~~~~~~~ms~eea~~la~~al~~~~~r  187 (233)
T 1ryp_N          156 RKVV------------------------------------------------DRESDIPKTTVQVAEEAIVNAMRVLYYR  187 (233)
T ss_dssp             TTTC------------------------------------------------SSGGGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhh------------------------------------------------ccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence            9987                                                55     999999999999999999999


Q ss_pred             ccCCCCcEEEEEEEcC-CEEEEe
Q psy10322        234 DIYTGDGVHLCAITKD-GIKEYN  255 (261)
Q Consensus       234 d~~~g~~v~i~~itkd-g~~~~~  255 (261)
                      |+.+|++++|++|++| |++...
T Consensus       188 d~~sg~~i~v~vi~~~~g~~~~~  210 (233)
T 1ryp_N          188 DARSSRNFSLAIIDKNTGLTFKK  210 (233)
T ss_dssp             BTTCCSEEEEEEEETTTEEEEEE
T ss_pred             cccCCCcEEEEEEECCCCeEEcC
Confidence            9999999999999999 887644

>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...

Probab=100.00  E-value=4.4e-41  Score=289.49  Aligned_cols=179  Identities=21%  Similarity=0.301  Sum_probs=168.2

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      ++|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++++++           +++.+++.|++++++++
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~   75 (198)
T 1ryp_K            1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLS-----PHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYEL   75 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeC-----CCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            479999999999999999999999988889999999999     99999876           88889999999999999


Q ss_pred             CHHHHHHHHHHHHhcc-cc-CCcceEEEEEEEcC-CCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         93 STTSLAKMISIMMYGK-RF-FPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~-r~-~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      +++.+|+++++++|.+ |. +||+|++||||||+ +++|+||++||+|++.++++.|+|+|+.+++++||+.|       
T Consensus        76 ~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~-------  148 (198)
T 1ryp_K           76 SPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY-------  148 (198)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhc-------
Confidence            9999999999999875 34 49999999999997 57899999999999999999999999999999999986       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                                                               +++||.|||++++++||..+.+||..+|++++|++|++|
T Consensus       149 -----------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~  187 (198)
T 1ryp_K          149 -----------------------------------------RPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKD  187 (198)
T ss_dssp             -----------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETT
T ss_pred             -----------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCC
Confidence                                                     789999999999999999999999999999999999999


Q ss_pred             CEEEEe
Q psy10322        250 GIKEYN  255 (261)
Q Consensus       250 g~~~~~  255 (261)
                      |+++..
T Consensus       188 g~~~~~  193 (198)
T 1ryp_K          188 GIRQVD  193 (198)
T ss_dssp             EEEEEC
T ss_pred             CEEEec
Confidence            987654

>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N

Probab=100.00  E-value=7.4e-41  Score=289.83  Aligned_cols=180  Identities=24%  Similarity=0.284  Sum_probs=170.4

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (205)
T 1iru_H            1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIH-----DRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL   75 (205)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcC-----CCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            68999999999999999999999888899999999999     99999876           888999999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.+|. ||++++||||||++++|+||.+||.|++.++++.|+|+|+.+++++||+.|           
T Consensus        76 v~~la~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~-----------  143 (205)
T 1iru_H           76 VHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY-----------  143 (205)
T ss_dssp             HHHHHHHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc-----------
Confidence            99999999999998875 999999999999867799999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||..+.+||..++++++|++|++||++.
T Consensus       144 -------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~  186 (205)
T 1iru_H          144 -------------------------------------REGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVER  186 (205)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEE
Confidence                                                 7899999999999999999999999999999999999999977


Q ss_pred             Eeecc
Q psy10322        254 YNFPL  258 (261)
Q Consensus       254 ~~~~~  258 (261)
                      +.++.
T Consensus       187 ~~l~~  191 (205)
T 1iru_H          187 QVLLG  191 (205)
T ss_dssp             EEECG
T ss_pred             EEeCh
Confidence            76653

>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M

Probab=100.00  E-value=3.1e-41  Score=295.18  Aligned_cols=184  Identities=18%  Similarity=0.180  Sum_probs=172.1

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      .+|+ .+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         2 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   75 (219)
T 1iru_N            2 QNPM-VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN-----NSTMLGASGDYADFQYLKQVLGQMVIDEE   75 (219)
T ss_dssp             CSCC-SEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEET-----TTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCc-cCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeC-----CCEEEEeccCHHHHHHHHHHHHHHHHHHH
Confidence            3454 57999999999999999999999999999999999999999     99999876           8888999998


Q ss_pred             h-hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhh
Q psy10322         86 H-EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQV  162 (261)
Q Consensus        86 ~-~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~  162 (261)
                      + +++++++++.+|+++++++|.+|  ++||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus        76 ~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~  154 (219)
T 1iru_N           76 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVL  154 (219)
T ss_dssp             HHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHH
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhc
Confidence            8 99999999999999999999877  789999999999996 5799999999999999999999999999999999988


Q ss_pred             hcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322        163 GIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDIYTGDG  240 (261)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~~~g~~  240 (261)
                                                                      ++  +||.|||++++++||..+.+||+.++++
T Consensus       155 ------------------------------------------------~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~  186 (219)
T 1iru_N          155 ------------------------------------------------EKQPVLSQTEARDLVERCMRVLYYRDARSYNR  186 (219)
T ss_dssp             ------------------------------------------------TSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSC
T ss_pred             ------------------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc
Confidence                                                            56  9999999999999999999999999999


Q ss_pred             EEEEEEEcCCEEEEe
Q psy10322        241 VHLCAITKDGIKEYN  255 (261)
Q Consensus       241 v~i~~itkdg~~~~~  255 (261)
                      ++|++|++||++...
T Consensus       187 i~v~vi~~~g~~~~~  201 (219)
T 1iru_N          187 FQTATVTEKGVEIEG  201 (219)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEcCCCEEEcC
Confidence            999999999986654

>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...

Probab=100.00  E-value=4e-41  Score=299.28  Aligned_cols=184  Identities=17%  Similarity=0.173  Sum_probs=165.9

Q ss_pred             ccC-CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhc
Q psy10322         21 SDN-GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEH   88 (261)
Q Consensus        21 ~~~-G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~   88 (261)
                      +++ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+     +|++|+++           +++.+++.|++.+
T Consensus        26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~   99 (243)
T 1ryp_A           26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCIS-----RTIGMVVNGPIPDARNAALRAKAEAAEFRYKY   99 (243)
T ss_dssp             TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECS-----SSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEEC-----CCEEEEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence            456 9999999999999999999999 6678889999999999     99999876           8889999999999


Q ss_pred             CCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         89 NKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        89 g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      +++|+++.+|+++++++  |.+|  ++||+|++||||||++++|+||++||+|++.++++.|+|+|+.+++++||+.|+.
T Consensus       100 ~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~  179 (243)
T 1ryp_A          100 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK  179 (243)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhh
Confidence            99999999999999999  7766  7899999999999976789999999999999999999999999999999999811


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                      ..                                       .  ...++||+|||++++++||..+.+|| .++++++|+
T Consensus       180 ~~---------------------------------------~--~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~  217 (243)
T 1ryp_A          180 SK---------------------------------------I--DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVG  217 (243)
T ss_dssp             HC---------------------------------------S--SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEE
T ss_pred             cc---------------------------------------c--ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEE
Confidence            00                                       0  00239999999999999999999999 689999999


Q ss_pred             EEEcCCEE
Q psy10322        245 AITKDGIK  252 (261)
Q Consensus       245 ~itkdg~~  252 (261)
                      +|++||++
T Consensus       218 vi~~~g~~  225 (243)
T 1ryp_A          218 VATKDKFF  225 (243)
T ss_dssp             EEETTEEE
T ss_pred             EEECCCeE
Confidence            99999944

>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5

Probab=100.00  E-value=7.6e-41  Score=306.12  Aligned_cols=182  Identities=23%  Similarity=0.261  Sum_probs=170.7

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|++.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~-----d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~  146 (287)
T 3nzj_K           72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEIN-----PFLLGTMAGGAADCQFWETWLGSQCRLHELREK  146 (287)
T ss_dssp             ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEc-----CcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999999999999     99999876           78899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      ++++++.+|+++++++|.+|.+||++++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|       
T Consensus       147 ~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y-------  219 (287)
T 3nzj_K          147 ERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY-------  219 (287)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC-------
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh-------
Confidence            9999999999999999999888999999999999777899999999999999999999999999999999976       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                                                               +++||.|||++++++||..+.+||+.+|++++|++|++|
T Consensus       220 -----------------------------------------~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd  258 (287)
T 3nzj_K          220 -----------------------------------------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED  258 (287)
T ss_dssp             -----------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred             -----------------------------------------cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC
Confidence                                                     789999999999999999999999999999999999999


Q ss_pred             CEEEEe
Q psy10322        250 GIKEYN  255 (261)
Q Consensus       250 g~~~~~  255 (261)
                      |+++..
T Consensus       259 g~~~l~  264 (287)
T 3nzj_K          259 GWIYHG  264 (287)
T ss_dssp             EEEEEE
T ss_pred             CEEEeC
Confidence            987643

>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K

Probab=100.00  E-value=2e-40  Score=286.85  Aligned_cols=176  Identities=22%  Similarity=0.287  Sum_probs=167.6

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (204)
T 1iru_L            1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEIN-----PYLLGTMAGGAADCSFWERLLARQCRIYELRNKERIS   75 (204)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcC-----CCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            68999999999999999999999889999999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.+|.+||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|           
T Consensus        76 v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~-----------  143 (204)
T 1iru_L           76 VAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY-----------  143 (204)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC-----------
T ss_pred             HHHHHHHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccC-----------
Confidence            9999999999999998889999999999996 5699999999999999999999999999999999976           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||..+.+||+.++++++|++|+++|++.
T Consensus       144 -------------------------------------~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~  186 (204)
T 1iru_L          144 -------------------------------------SYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIR  186 (204)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence                                                 7899999999999999999999999999999999999999765


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       187 l  187 (204)
T 1iru_L          187 V  187 (204)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...

Probab=100.00  E-value=1.7e-40  Score=289.15  Aligned_cols=177  Identities=23%  Similarity=0.256  Sum_probs=168.8

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++++
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (212)
T 1ryp_L            1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEIN-----PFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS   75 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeC-----CcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            68999999999999999999999889999999999999     99999886           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.++..||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|           
T Consensus        76 v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~-----------  144 (212)
T 1ryp_L           76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY-----------  144 (212)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC-----------
Confidence            999999999999998888999999999999767799999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||..+.+||..++++++|++|+++|++.
T Consensus       145 -------------------------------------~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~  187 (212)
T 1ryp_L          145 -------------------------------------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY  187 (212)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEE
Confidence                                                 7899999999999999999999999999999999999999765


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       188 ~  188 (212)
T 1ryp_L          188 H  188 (212)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J

Probab=100.00  E-value=2.7e-40  Score=285.46  Aligned_cols=179  Identities=21%  Similarity=0.322  Sum_probs=167.0

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      ++|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++++++           +++.+++.|++++++++
T Consensus         1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~   75 (201)
T 1iru_K            1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMS-----EKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYEL   75 (201)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECS-----SSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEec-----CCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            479999999999999999999999889999999999999     99999876           88889999999999999


Q ss_pred             CHHHHHHHHHHHH-hccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322         93 STTSLAKMISIMM-YGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK  170 (261)
Q Consensus        93 sv~~lA~~Is~~l-y~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~  170 (261)
                      +++.+|+++++.+ |..| .+||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|        
T Consensus        76 ~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--------  147 (201)
T 1iru_K           76 SPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--------  147 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--------
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--------
Confidence            9999999999865 5533 36999999999999867899999999999999999999999999999999986        


Q ss_pred             chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322        171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg  250 (261)
                                                              +++||.|||++++++||..+.+||+.+|++++|++|++||
T Consensus       148 ----------------------------------------~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g  187 (201)
T 1iru_K          148 ----------------------------------------TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNG  187 (201)
T ss_dssp             ----------------------------------------CTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTE
T ss_pred             ----------------------------------------cCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCC
Confidence                                                    7899999999999999999999999999999999999999


Q ss_pred             EEEEe
Q psy10322        251 IKEYN  255 (261)
Q Consensus       251 ~~~~~  255 (261)
                      +++..
T Consensus       188 ~~~~~  192 (201)
T 1iru_K          188 IHDLD  192 (201)
T ss_dssp             EECCC
T ss_pred             eEEee
Confidence            97654

>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G

Probab=100.00  E-value=1.8e-40  Score=295.57  Aligned_cols=184  Identities=20%  Similarity=0.242  Sum_probs=168.1

Q ss_pred             cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322         18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH   86 (261)
Q Consensus        18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~   86 (261)
                      +++..+|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+     +|++|+++           +++.+++.|++
T Consensus        30 ~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~  103 (246)
T 1iru_A           30 KAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKIT-----ENIGCVMTGMTADSRSQVQRARYEAANWKY  103 (246)
T ss_dssp             HHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEEC-----CCEEEEEeccHHHHHHHHHHHHHHHHHHHH
Confidence            4444449999999999999999999999 5678889999999999     99999876           88899999999


Q ss_pred             hcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhh
Q psy10322         87 EHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQV  162 (261)
Q Consensus        87 ~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~  162 (261)
                      +++++|+++.+|+++++++  |.+|  ++||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus       104 ~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~  183 (246)
T 1iru_A          104 KYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV  183 (246)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHT
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhh
Confidence            9999999999999999985  5544  78999999999999767799999999999999999999999999999999987


Q ss_pred             hcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322        163 GIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDIYTGDG  240 (261)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~~~g~~  240 (261)
                                                                      ++  +||+|||++++++||..+.+|| .+|++
T Consensus       184 ------------------------------------------------~~~~~ms~eea~~la~~al~~~~~rd-~sg~~  214 (246)
T 1iru_A          184 ------------------------------------------------KKKFDWTFEQTVETAITCLSTVLSID-FKPSE  214 (246)
T ss_dssp             ------------------------------------------------TSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTS
T ss_pred             ------------------------------------------------cccCCCCHHHHHHHHHHHHHHHhccc-CCCCc
Confidence                                                            56  9999999999999999999999 88999


Q ss_pred             EEEEEEEcCCEEEEee
Q psy10322        241 VHLCAITKDGIKEYNF  256 (261)
Q Consensus       241 v~i~~itkdg~~~~~~  256 (261)
                      ++|++|+++|++.+.+
T Consensus       215 i~v~vi~~~g~~~~~l  230 (246)
T 1iru_A          215 IEVGVVTVENPKFRIL  230 (246)
T ss_dssp             EEEEEEETTEEEEEEC
T ss_pred             EEEEEEECCCCeEEEC
Confidence            9999999999855544

>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H

Probab=100.00  E-value=7e-40  Score=291.35  Aligned_cols=176  Identities=20%  Similarity=0.238  Sum_probs=166.6

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++++
T Consensus         1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (234)
T 3unf_H            1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIA-----PKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPR   75 (234)
T ss_dssp             CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEec-----CCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence            68999999999999999999999988889999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|++ .+||+|++||||||++ +|+||++||.|++.++++.|+|+|+.+++++||+.|           
T Consensus        76 v~~la~~l~~~l~~~-~~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~-----------  142 (234)
T 3unf_H           76 VATVTRILRQTLFRY-QGHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF-----------  142 (234)
T ss_dssp             HHHHHHHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHhc-CCCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc-----------
Confidence            999999999999876 4699999999999975 599999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||+|||++++++||..+.+||+.+|++++|++|++||++.
T Consensus       143 -------------------------------------~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~  185 (234)
T 3unf_H          143 -------------------------------------QPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKL  185 (234)
T ss_dssp             -------------------------------------CSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEE
T ss_pred             -------------------------------------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEE
Confidence                                                 8899999999999999999999999999999999999999876


Q ss_pred             Ee
Q psy10322        254 YN  255 (261)
Q Consensus       254 ~~  255 (261)
                      ..
T Consensus       186 l~  187 (234)
T 3unf_H          186 QR  187 (234)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2

Probab=100.00  E-value=1.1e-39  Score=294.68  Aligned_cols=175  Identities=21%  Similarity=0.235  Sum_probs=164.0

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~  100 (261)
T 3nzj_H           26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS-----PKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS  100 (261)
T ss_dssp             ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEc-----CCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence            568999999999999999999999999999999999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      ++++++.+|+++++++|++ .+||++++||||||++ +|+||++||+|++.++++.|+|+|+.+++++||+.|       
T Consensus       101 ~~~~v~~~a~~l~~~l~~~-~~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~-------  171 (261)
T 3nzj_H          101 REPRVVSALQMLKQHLFKY-QGHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW-------  171 (261)
T ss_dssp             SCCCHHHHHHHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC-------
T ss_pred             CCCCHHHHHHHHHHHHHHh-cCcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh-------
Confidence            9999999999999999876 3699999999999975 599999999999999999999999999999999986       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                                                               +++||+|||++++++||..+.+||..+|++++|++|++|
T Consensus       172 -----------------------------------------~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kd  210 (261)
T 3nzj_H          172 -----------------------------------------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIG  210 (261)
T ss_dssp             -----------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETT
T ss_pred             -----------------------------------------ccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECC
Confidence                                                     899999999999999999999999999999999999999


Q ss_pred             C
Q psy10322        250 G  250 (261)
Q Consensus       250 g  250 (261)
                      |
T Consensus       211 g  211 (261)
T 3nzj_H          211 K  211 (261)
T ss_dssp             S
T ss_pred             C
Confidence            9

>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...

Probab=100.00  E-value=2.1e-39  Score=285.17  Aligned_cols=175  Identities=21%  Similarity=0.219  Sum_probs=166.0

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++|+
T Consensus         1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (222)
T 1ryp_I            1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS-----PKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR   75 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEec-----CCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            68999999999999999999999989999999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+++++++++|+++ +||++++||||||+ ++|+||++||.|++.++++.|+|+|+.+++++||+.|           
T Consensus        76 v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~-----------  142 (222)
T 1ryp_I           76 VVSALQMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW-----------  142 (222)
T ss_dssp             HHHHHHHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC-----------
Confidence            9999999999998874 79999999999997 4599999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC-EE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG-IK  252 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg-~~  252 (261)
                                                           +++||+|||++++++||..+++||..+|++++|++|++|| ++
T Consensus       143 -------------------------------------~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~  185 (222)
T 1ryp_I          143 -------------------------------------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAE  185 (222)
T ss_dssp             -------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEE
T ss_pred             -------------------------------------CCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEE
Confidence                                                 7899999999999999999999999999999999999999 77


Q ss_pred             EE
Q psy10322        253 EY  254 (261)
Q Consensus       253 ~~  254 (261)
                      ..
T Consensus       186 ~~  187 (222)
T 1ryp_I          186 YL  187 (222)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...

Probab=100.00  E-value=1.2e-39  Score=289.64  Aligned_cols=178  Identities=18%  Similarity=0.242  Sum_probs=165.9

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  102 (244)
T 1ryp_C           28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN-----DKIAVAVAGLTADAEILINTARIHAQNYLKTYN  102 (244)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEEC-----CCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence            467999999999999999999999999877689999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|+++++++|.+    +.|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|   
T Consensus       103 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~---  179 (244)
T 1ryp_C          103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY---  179 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhh---
Confidence            9999999999999999542    468999999999999557799999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||++++++||..+.+||..+|++++|++
T Consensus       180 ---------------------------------------------~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~v  214 (244)
T 1ryp_C          180 ---------------------------------------------KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFAT  214 (244)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEE
T ss_pred             ---------------------------------------------hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEE
Confidence                                                         78999999999999999999999666799999999


Q ss_pred             EE--cCCE
Q psy10322        246 IT--KDGI  251 (261)
Q Consensus       246 it--kdg~  251 (261)
                      |+  +||.
T Consensus       215 i~~~~~~~  222 (244)
T 1ryp_C          215 IRKGANDG  222 (244)
T ss_dssp             EECCSSSS
T ss_pred             EEeecCCC
Confidence            99  9986

>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B

Probab=100.00  E-value=1.5e-39  Score=292.68  Aligned_cols=178  Identities=15%  Similarity=0.162  Sum_probs=168.1

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  102 (261)
T 1iru_C           28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLN-----EDMACSVAGITSDANVLTNELRLIAQRYLLQYQ  102 (261)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEec-----CCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence            467999999999999999999999999988888899999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|+++++++|.++    .|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|   
T Consensus       103 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~---  179 (261)
T 1iru_C          103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY---  179 (261)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhh---
Confidence            99999999999999997653    67999999999999767799999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT-PVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                   ++ +||.|||++++++||..+.+||..+|++++|+
T Consensus       180 ---------------------------------------------~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~  214 (261)
T 1iru_C          180 ---------------------------------------------KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA  214 (261)
T ss_dssp             ---------------------------------------------CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEE
T ss_pred             ---------------------------------------------ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence                                                         78 99999999999999999999999999999999


Q ss_pred             EEEcCCE
Q psy10322        245 AITKDGI  251 (261)
Q Consensus       245 ~itkdg~  251 (261)
                      +|+++|.
T Consensus       215 vi~~~~~  221 (261)
T 1iru_C          215 TLTRENG  221 (261)
T ss_dssp             EEECCSS
T ss_pred             EEEcCCC
Confidence            9999984

>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A

Probab=100.00  E-value=2.1e-39  Score=286.34  Aligned_cols=180  Identities=17%  Similarity=0.244  Sum_probs=165.3

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      +++. ++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus        25 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~   97 (233)
T 1iru_B           25 LAAV-AGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPIT-----KHIGLVYSGMGPDYRVLVHRARKLAQQYY   97 (233)
T ss_dssp             HHHH-HTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEEC-----CCEEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence            4443 579999999999999999999998 4678889999999999     99999876           8888999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322         86 HEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ  161 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~  161 (261)
                      ++++++++++.+|+++++++  |.++  ++||+|++||||||+ ++|+||++||.|++.++++.|+|+|+.+++++||+.
T Consensus        98 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~  176 (233)
T 1iru_B           98 LVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR  176 (233)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHH
Confidence            99999999999999999999  4443  689999999999994 569999999999999999999999999999999998


Q ss_pred             hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322        162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV  241 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v  241 (261)
                      |                                                +++||.|||++++++||..+.+|| .+|+++
T Consensus       177 ~------------------------------------------------~~~ms~eea~~la~~al~~~~~~d-~sg~~i  207 (233)
T 1iru_B          177 Y------------------------------------------------NEDLELEDAIHTAILTLKESFEGQ-MTEDNI  207 (233)
T ss_dssp             C------------------------------------------------CTTCCHHHHHHHHHHHHHTTCCSC-CCSSSE
T ss_pred             h------------------------------------------------ccCCCHHHHHHHHHHHHHHHhhcc-CCCCCE
Confidence            6                                                789999999999999999999999 679999


Q ss_pred             EEEEEEcCCEEE
Q psy10322        242 HLCAITKDGIKE  253 (261)
Q Consensus       242 ~i~~itkdg~~~  253 (261)
                      +|++|++||++.
T Consensus       208 ~v~vi~~~g~~~  219 (233)
T 1iru_B          208 EVGICNEAGFRR  219 (233)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCCEEE
Confidence            999999999654

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A

Probab=100.00  E-value=3.6e-39  Score=284.80  Aligned_cols=175  Identities=18%  Similarity=0.185  Sum_probs=163.7

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+++ ++..++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  104 (233)
T 1yar_A           31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLID-----DYVAAVTSGLVADARVLVDFARISAQQEKVTYG  104 (233)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEec-----CCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            467999999999999999999999997 57788999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++.+|+++++++|.++    .|||+|++||||||+ ++|+||.+||.|++.++++.|+|+|+.+++++||+.|   
T Consensus       105 ~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~---  180 (233)
T 1yar_A          105 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY---  180 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHh---
Confidence            99999999999999998543    579999999999997 5699999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||++++++||..+.+||+ ++++++|++
T Consensus       181 ---------------------------------------------~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~v  214 (233)
T 1yar_A          181 ---------------------------------------------KENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIAS  214 (233)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEE
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEE
Confidence                                                         7899999999999999999999998 699999999


Q ss_pred             EEcCCE
Q psy10322        246 ITKDGI  251 (261)
Q Consensus       246 itkdg~  251 (261)
                      |++||.
T Consensus       215 i~~~~~  220 (233)
T 1yar_A          215 ITVGNK  220 (233)
T ss_dssp             EETTSC
T ss_pred             EECCCC
Confidence            999983

>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N

Probab=100.00  E-value=3.2e-39  Score=278.10  Aligned_cols=177  Identities=23%  Similarity=0.274  Sum_probs=165.0

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (199)
T 3unf_N            1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLH-----QRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPL   75 (199)
T ss_dssp             CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcC-----CCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            68999999999999999999999889999999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhcccccccch
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGIIQHSSKQM  172 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~  172 (261)
                      ++.+|+++++++|.+| +||+|++||||||++++|+||+  |+|++.+ ..+.++|+|+.+++++||+.|          
T Consensus        76 v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~----------  142 (199)
T 3unf_N           76 VLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAY----------  142 (199)
T ss_dssp             HHHHHHHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhc----------
Confidence            9999999999999875 5999999999999877899999  9998755 567778999999999999987          


Q ss_pred             hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEE
Q psy10322        173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK  252 (261)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~  252 (261)
                                                            +++||+|||++++++||..+.+||+.+|++++|++|++||++
T Consensus       143 --------------------------------------~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~  184 (199)
T 3unf_N          143 --------------------------------------KPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVD  184 (199)
T ss_dssp             --------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEE
T ss_pred             --------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEE
Confidence                                                  799999999999999999999999999999999999999988


Q ss_pred             EEeec
Q psy10322        253 EYNFP  257 (261)
Q Consensus       253 ~~~~~  257 (261)
                      .+.++
T Consensus       185 ~~~l~  189 (199)
T 3unf_N          185 HRVIL  189 (199)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            77664

>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...

Probab=100.00  E-value=3.4e-39  Score=286.47  Aligned_cols=176  Identities=18%  Similarity=0.151  Sum_probs=164.8

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++ +++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   96 (242)
T 1ryp_E           23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEID-----RHIGCAMSGLTADARSMIEHARTAAVTHNLYYD   96 (242)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEE-----TTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEc-----CCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence            457999999999999999999999999877 88999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----------cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHH
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLD  159 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le  159 (261)
                      ++++++.+|+++++++|.++          .|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||
T Consensus        97 ~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le  176 (242)
T 1ryp_E           97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELL  176 (242)
T ss_dssp             SCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHH
Confidence            99999999999999987631          67999999999999667799999999999999999999999999999999


Q ss_pred             hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322        160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD  239 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~  239 (261)
                      +.|                                                +++||.|||++++++||..+.+| ..+|+
T Consensus       177 ~~~------------------------------------------------~~~ms~eea~~la~~al~~~~~~-~~sg~  207 (242)
T 1ryp_E          177 NEW------------------------------------------------HSSLTLKEAELLVLKILKQVMEE-KLDEN  207 (242)
T ss_dssp             HHC------------------------------------------------CTTCCHHHHHHHHHHHHHHHCSS-CCCTT
T ss_pred             Hhh------------------------------------------------ccCCCHHHHHHHHHHHHHHHhhc-cCCCC
Confidence            986                                                78999999999999999999999 66799


Q ss_pred             cEEEEEEEcCCE
Q psy10322        240 GVHLCAITKDGI  251 (261)
Q Consensus       240 ~v~i~~itkdg~  251 (261)
                      +++|++|++||.
T Consensus       208 ~i~v~vi~~~~~  219 (242)
T 1ryp_E          208 NAQLSCITKQDG  219 (242)
T ss_dssp             SEEEEEEETTTE
T ss_pred             cEEEEEEECCCC
Confidence            999999999997

>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H

Probab=100.00  E-value=1.6e-38  Score=281.97  Aligned_cols=175  Identities=19%  Similarity=0.278  Sum_probs=165.2

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++++
T Consensus         1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (234)
T 1iru_I            1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFIS-----PNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPR   75 (234)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEec-----CCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            68999999999999999999999988889999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+++++++.+|.++ +||++++||||||++ +|+||++||.|++.++++.|+|+|+..++++||+.|           
T Consensus        76 v~~la~~l~~~l~~~~-~~~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~-----------  142 (234)
T 1iru_I           76 VVTANRMLKQMLFRYR-GYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF-----------  142 (234)
T ss_dssp             HHHHHHHHHHHHHHTT-TCSCEEEEEEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC-----------
T ss_pred             HHHHHHHHHHHHHhcC-CCCceeEEEEEEcCC-CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc-----------
Confidence            9999999999998764 699999999999974 599999999999999999999999999999999976           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||..+.+||..+|++++|++|++||++.
T Consensus       143 -------------------------------------~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~  185 (234)
T 1iru_I          143 -------------------------------------RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDF  185 (234)
T ss_dssp             -------------------------------------CTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEEC
T ss_pred             -------------------------------------cCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEE
Confidence                                                 7899999999999999999999999999999999999999864


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       186 ~  186 (234)
T 1iru_I          186 L  186 (234)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D

Probab=100.00  E-value=1e-38  Score=283.46  Aligned_cols=175  Identities=17%  Similarity=0.217  Sum_probs=163.7

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.+.|.++ +++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  104 (241)
T 1iru_E           31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEID-----AHIGCAMSGLIADAKTLIDKARVETQNHWFTYN  104 (241)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEc-----CCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhC
Confidence            467999999999999999999999999877 89999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHH--hccc-------cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322         90 KVMSTTSLAKMISIMM--YGKR-------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN  160 (261)
Q Consensus        90 ~~isv~~lA~~Is~~l--y~~r-------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~  160 (261)
                      ++++++.+|+++++++  |.++       .|||+|++|||||| +++|+||++||.|++.++++.|+|+|+.+++++||+
T Consensus       105 ~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~  183 (241)
T 1iru_E          105 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE  183 (241)
T ss_dssp             SCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHH
Confidence            9999999999999998  4333       57999999999999 567999999999999999999999999999999999


Q ss_pred             hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322        161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG  240 (261)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~  240 (261)
                      .|                                                +++||.|||++++++||..+.+| ..+|++
T Consensus       184 ~~------------------------------------------------~~~ms~eea~~la~~al~~~~~~-~~sg~~  214 (241)
T 1iru_E          184 LY------------------------------------------------HKSMTLKEAIKSSLIILKQVMEE-KLNATN  214 (241)
T ss_dssp             HC------------------------------------------------CTTCCHHHHHHHHHHHHHHHCSS-CCCTTS
T ss_pred             Hh------------------------------------------------ccCCCHHHHHHHHHHHHHHHhhc-cCCCCC
Confidence            86                                                78999999999999999999999 678999


Q ss_pred             EEEEEEEcCCE
Q psy10322        241 VHLCAITKDGI  251 (261)
Q Consensus       241 v~i~~itkdg~  251 (261)
                      ++|++|++||.
T Consensus       215 i~v~vi~~~~~  225 (241)
T 1iru_E          215 IELATVQPGQN  225 (241)
T ss_dssp             EEEEEECSSSC
T ss_pred             EEEEEEECCCC
Confidence            99999999997

>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F

Probab=100.00  E-value=7.9e-39  Score=286.85  Aligned_cols=175  Identities=11%  Similarity=0.076  Sum_probs=163.6

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.|.++. ++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  103 (254)
T 1iru_G           30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVD-----RHVGMAVAGLLADARSLADIAREEASNFRSNFG  103 (254)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEEC-----CCEEEEEecChHHHHHHHHHHHHHHHHHHHHhC
Confidence            4579999999999999999999999998774 8899999999     99999876           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|+++++++|.++    ++||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|   
T Consensus       104 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~---  180 (254)
T 1iru_G          104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ---  180 (254)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSC---
T ss_pred             CCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhc---
Confidence            99999999999999997653    68999999999999667799999999999999999999999999999999975   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||+|||++++++||..+.++|..++++++|++
T Consensus       181 ---------------------------------------------~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~v  215 (254)
T 1iru_G          181 ---------------------------------------------MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSW  215 (254)
T ss_dssp             ---------------------------------------------GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEE
T ss_pred             ---------------------------------------------cCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence                                                         67999999999999999999999887899999999


Q ss_pred             EEcC
Q psy10322        246 ITKD  249 (261)
Q Consensus       246 itkd  249 (261)
                      |+++
T Consensus       216 i~~~  219 (254)
T 1iru_G          216 VGEL  219 (254)
T ss_dssp             CBTT
T ss_pred             EEcC
Confidence            9988

>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4

Probab=100.00  E-value=3.5e-38  Score=279.54  Aligned_cols=176  Identities=20%  Similarity=0.243  Sum_probs=164.5

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      +|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++++|+
T Consensus         1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (235)
T 1q5q_H            1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTD-----EYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT   75 (235)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeC-----CcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCC
Confidence            68999999999999999999999899999999999999     99999875           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccc---cCCcceEEEEEEEcCCCC-----eEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhh
Q psy10322         94 TTSLAKMISIMMYGKR---FFPYYTSTIIAGLDPEGK-----GCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVG  163 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D~~g~-----p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~  163 (261)
                      ++.+|++|++++|.++   ++||+|++||||||++++     |+||++||+|++.++  ++.|+|+|+.+++++||+.| 
T Consensus        76 v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~-  154 (235)
T 1q5q_H           76 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY-  154 (235)
T ss_dssp             HHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc-
Confidence            9999999999998864   689999999999998756     999999999999999  99999999999999999986 


Q ss_pred             cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E
Q psy10322        164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG--V  241 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~--v  241 (261)
                                                                     +++||+|||++++++||..+.+||+.+|+.  +
T Consensus       155 -----------------------------------------------~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i  187 (235)
T 1q5q_H          155 -----------------------------------------------SPDSDEETALRAAIESLYDAADDDSATGGPDLT  187 (235)
T ss_dssp             -----------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTT
T ss_pred             -----------------------------------------------CCCCCHHHHHHHHHHHHHHHHhhCcccCCcccc
Confidence                                                           789999999999999999999999998753  2


Q ss_pred             -----EEEEEEcCCEEE
Q psy10322        242 -----HLCAITKDGIKE  253 (261)
Q Consensus       242 -----~i~~itkdg~~~  253 (261)
                           +|++|+++|++.
T Consensus       188 ~~~~~ev~vi~~~g~~~  204 (235)
T 1q5q_H          188 RGIYPTAVTITQAGAVH  204 (235)
T ss_dssp             TTBCCEEEEEETTEEEE
T ss_pred             cccccEEEEEeCCCeEE
Confidence                 999999999765

>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...

Probab=100.00  E-value=3.8e-38  Score=280.91  Aligned_cols=182  Identities=14%  Similarity=0.161  Sum_probs=165.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++.++ .+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  100 (244)
T 1ryp_G           27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVD-----RHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK  100 (244)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEET-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEec-----CCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            457999999999999999999999999877654 59999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc--c--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK--R--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~--r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|++++++++.+  +  ++||+|++||||||+ ++|+||++||.|++.++++.|+|+|+.+++++||+.+   
T Consensus       101 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~---  176 (244)
T 1ryp_G          101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV---  176 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhH---
Confidence            9999999999999999443  2  589999999999996 5699999999999999999999999999999999972   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                          +      .|+++||.|||++++++||..+.+||..++++++|++
T Consensus       177 ------------------------------------~------~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~v  214 (244)
T 1ryp_G          177 ------------------------------------D------HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISW  214 (244)
T ss_dssp             ------------------------------------H------HCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEE
T ss_pred             ------------------------------------h------hcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEE
Confidence                                                0      0378999999999999999999999999999999999


Q ss_pred             EEc---CCEEEE
Q psy10322        246 ITK---DGIKEY  254 (261)
Q Consensus       246 itk---dg~~~~  254 (261)
                      |++   +|++..
T Consensus       215 i~~~~~~g~~~~  226 (244)
T 1ryp_G          215 CSLSETNGLHKF  226 (244)
T ss_dssp             EETTTTTTSEEE
T ss_pred             EEecCCCCeeee
Confidence            998   887654

>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...

Probab=100.00  E-value=1e-37  Score=277.05  Aligned_cols=177  Identities=15%  Similarity=0.237  Sum_probs=162.7

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   99 (241)
T 1ryp_D           25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKID-----SHVVLSFSGLNADSRILIEKARVEAQSHRLTLE   99 (241)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEec-----CCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence            467999999999999999999999999888777999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCC-CCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPE-GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~-g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      ++|+++.+|+++++++|.++    .|||+|++||||||++ ++|+||++||.|++.++++.|+|+|+.+++++||+.|  
T Consensus       100 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--  177 (241)
T 1ryp_D          100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY--  177 (241)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTC--
T ss_pred             CCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhh--
Confidence            99999999999999998642    4799999999999975 7799999999999999999999999999999999875  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                           +.      .+++||+|||++++++||..+.+   .+|++++|+
T Consensus       178 -------------------------------------~~------~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~  211 (241)
T 1ryp_D          178 -------------------------------------DR------KEPPATVEECVKLTVRSLLEVVQ---TGAKNIEIT  211 (241)
T ss_dssp             -------------------------------------CT------TSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEE
T ss_pred             -------------------------------------hc------ccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEE
Confidence                                                 10      06899999999999999999996   679999999


Q ss_pred             EEEcCC
Q psy10322        245 AITKDG  250 (261)
Q Consensus       245 ~itkdg  250 (261)
                      +|++||
T Consensus       212 vi~~~~  217 (241)
T 1ryp_D          212 VVKPDS  217 (241)
T ss_dssp             EEETTT
T ss_pred             EEECCC
Confidence            999997

>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H

Probab=100.00  E-value=4.5e-38  Score=288.65  Aligned_cols=180  Identities=19%  Similarity=0.246  Sum_probs=168.0

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~-----~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g  136 (294)
T 1q5r_H           62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTD-----EYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG  136 (294)
T ss_dssp             SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEEC-----CcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence            468999999999999999999999999899999999999999     99999875           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc---cCCcceEEEEEEEcCCCC-----eEEEEECCCCceeec--CEEEEecChHHHHHHHH
Q psy10322         90 KVMSTTSLAKMISIMMYGKR---FFPYYTSTIIAGLDPEGK-----GCVYSYDPIGHTERA--NFRAGGSSGALLQALLD  159 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D~~g~-----p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le  159 (261)
                      ++|+++.+|++|++++|.++   .+||+|++||||||++++     |+||++||.|++.++  ++.|+|+|+.+++++||
T Consensus       137 ~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le  216 (294)
T 1q5r_H          137 VPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK  216 (294)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence            99999999999999998754   489999999999998756     999999999999998  89999999999999999


Q ss_pred             hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322        160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD  239 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~  239 (261)
                      +.|                                                +++||+|||++++++||..+.+||+.+|+
T Consensus       217 ~~y------------------------------------------------~~~ms~eEAi~la~~aL~~a~~rD~~sG~  248 (294)
T 1q5r_H          217 KIY------------------------------------------------SPDSDEETALRAAIESLYDAADDDSATGG  248 (294)
T ss_dssp             HHC------------------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred             Hhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhhccccCC
Confidence            986                                                78999999999999999999999999875


Q ss_pred             c--E-----EEEEEEcCCEEE
Q psy10322        240 G--V-----HLCAITKDGIKE  253 (261)
Q Consensus       240 ~--v-----~i~~itkdg~~~  253 (261)
                      .  +     +|++|+++|+++
T Consensus       249 ~~~ir~i~~ev~vI~~~g~~~  269 (294)
T 1q5r_H          249 PDLTRGIYPTAVTITQAGAVH  269 (294)
T ss_dssp             CBTTTTBCCEEEEEETTEEEE
T ss_pred             chhhcccCCEEEEEECCCEEE
Confidence            4  6     999999999765

>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=2.8e-38  Score=285.57  Aligned_cols=178  Identities=23%  Similarity=0.309  Sum_probs=163.4

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      .+|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|+     +|++|+++           +++.+++.|++.+++
T Consensus        36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~  109 (264)
T 3h4p_A           36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQID-----DHVAAATSGLVADARVLIDRARLEAQIYRLTYGE  109 (264)
T ss_dssp             HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEE-----TTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCS
T ss_pred             hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEec-----CcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCC
Confidence            57999999999999999999999997 57789999999999     99999876           788899999999999


Q ss_pred             cCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322         91 VMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQ  166 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~  166 (261)
                      +|+++.+|++++++++.+    +++||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|    
T Consensus       110 ~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~----  184 (264)
T 3h4p_A          110 EISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEY----  184 (264)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHC----
T ss_pred             CCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhc----
Confidence            999999999999998543    2589999999999995 5699999999999999999999999999999999987    


Q ss_pred             ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                                  +++||+|||++++++||..+.+|  .+|++++|++|
T Consensus       185 --------------------------------------------~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi  218 (264)
T 3h4p_A          185 --------------------------------------------RDDITLDEGLELAITALTKANED--IKPENVDVCII  218 (264)
T ss_dssp             --------------------------------------------CTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEE
T ss_pred             --------------------------------------------cCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEE
Confidence                                                        78999999999999999999987  68999999999


Q ss_pred             EcCCEEEEee
Q psy10322        247 TKDGIKEYNF  256 (261)
Q Consensus       247 tkdg~~~~~~  256 (261)
                      ++++...+.+
T Consensus       219 ~~~~~~~~~l  228 (264)
T 3h4p_A          219 TVKDAQFKKI  228 (264)
T ss_dssp             ETTTTEEEEC
T ss_pred             EeCCCcEEEC
Confidence            9886554444

>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*

Probab=100.00  E-value=4.7e-38  Score=287.74  Aligned_cols=176  Identities=14%  Similarity=0.132  Sum_probs=162.1

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|.++|.++.+ +.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~  104 (288)
T 3nzj_F           31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVD-----RHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK  104 (288)
T ss_dssp             HHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEET-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEc-----CCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence            45799999999999999999999999987664 779999999     99999876           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|+++++++|.+    +++||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.+   
T Consensus       105 ~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~---  180 (288)
T 3nzj_F          105 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV---  180 (288)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHH---
T ss_pred             CcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhc---
Confidence            9999999999999999653    37899999999999975 599999999999999999999999999999999983   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                          .      .|+++||+|||++++++||..+.+||..+++.++|++
T Consensus       181 ------------------------------------~------~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~v  218 (288)
T 3nzj_F          181 ------------------------------------D------HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISW  218 (288)
T ss_dssp             ------------------------------------H------HCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEE
T ss_pred             ------------------------------------c------ccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEE
Confidence                                                0      0379999999999999999999999998999999999


Q ss_pred             EEc
Q psy10322        246 ITK  248 (261)
Q Consensus       246 itk  248 (261)
                      |++
T Consensus       219 It~  221 (288)
T 3nzj_F          219 CSL  221 (288)
T ss_dssp             EET
T ss_pred             EEe
Confidence            998

>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...

Probab=100.00  E-value=9.9e-38  Score=275.83  Aligned_cols=175  Identities=15%  Similarity=0.166  Sum_probs=159.6

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.|..   ++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   99 (233)
T 1ryp_F           28 IKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCD-----EHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFN   99 (233)
T ss_dssp             HHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEc-----CCEEEEEEechHHHHHHHHHHHHHHHHHHHHHC
Confidence            45799999999999999999999999853   5889999999     99999876           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhc----cccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYG----KRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~----~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|++++++++.    .+.|||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|   
T Consensus       100 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~---  175 (233)
T 1ryp_F          100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL---  175 (233)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHh---
Confidence            999999999999999953    23579999999999997 4599999999999999999999999999999999988   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CC--CHHHHHHHHHHHHHHHHhcc-cCCCCc
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PV--PLEKAISVVKDAFTAAAERD-IYTGDG  240 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--s~eea~~l~~~al~~~~~rd-~~~g~~  240 (261)
                                                                   ++  +|  |+|||++++++||..+. || ..++++
T Consensus       176 ---------------------------------------------~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~  209 (233)
T 1ryp_F          176 ---------------------------------------------DTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDN  209 (233)
T ss_dssp             ---------------------------------------------HHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTT
T ss_pred             ---------------------------------------------ccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCc
Confidence                                                         45  89  99999999999999999 88 678999


Q ss_pred             EEEEEEEcC-CEEE
Q psy10322        241 VHLCAITKD-GIKE  253 (261)
Q Consensus       241 v~i~~itkd-g~~~  253 (261)
                      ++|++|++| |++.
T Consensus       210 i~v~vi~~~~~~~~  223 (233)
T 1ryp_F          210 LSIAIVGKDTPFTI  223 (233)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEEECCCCEEE
Confidence            999999999 5443

>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...

Probab=100.00  E-value=1.5e-37  Score=277.57  Aligned_cols=175  Identities=19%  Similarity=0.215  Sum_probs=160.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHh-hhhhc
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQM-YLHEH   88 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~-y~~~~   88 (261)
                      +.+|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+     +|++|+++           +++.+++. |++.+
T Consensus        28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  101 (250)
T 1ryp_B           28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLT-----PDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIY  101 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEEC-----CCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3579999999999999999999998 5678889999999999     99999876           77888888 99999


Q ss_pred             CCcCCHHHHHHHHHHHHh----ccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         89 NKVMSTTSLAKMISIMMY----GKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        89 g~~isv~~lA~~Is~~ly----~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      +.+++++.+++.+++++.    .++++||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|  
T Consensus       102 ~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--  179 (250)
T 1ryp_B          102 GEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--  179 (250)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHh--
Confidence            999999999888888763    33578999999999999867899999999999999999999999999999999986  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                    +++||.|||++++++||..+.+||. +|++++|+
T Consensus       180 ----------------------------------------------~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~  212 (250)
T 1ryp_B          180 ----------------------------------------------NDELELEDAIHIALLTLKESVEGEF-NGDTIELA  212 (250)
T ss_dssp             ----------------------------------------------CTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEE
T ss_pred             ----------------------------------------------ccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEE
Confidence                                                          7899999999999999999999865 79999999


Q ss_pred             EEEcCC
Q psy10322        245 AITKDG  250 (261)
Q Consensus       245 ~itkdg  250 (261)
                      +|++||
T Consensus       213 vi~~~~  218 (250)
T 1ryp_B          213 IIGDEN  218 (250)
T ss_dssp             EECSCC
T ss_pred             EEEccc
Confidence            999974

>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*

Probab=100.00  E-value=1e-37  Score=278.56  Aligned_cols=173  Identities=19%  Similarity=0.248  Sum_probs=160.8

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.| ++..++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus        26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~   99 (248)
T 1iru_D           26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALD-----DNVCMAFAGLTADARIVINRARVECQSHRLTVE   99 (248)
T ss_dssp             HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEc-----CCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence            457999999999999999999999998 57778999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc--c--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK--R--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~--r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|++++++++.+  +  .|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|   
T Consensus       100 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~---  176 (248)
T 1iru_D          100 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY---  176 (248)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTC---
T ss_pred             CCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhh---
Confidence            9999999999999999653  2  57999999999999667799999999999999999999999999999999976   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPV--PLEKAISVVKDAFTAAAERDIYTGDGVHL  243 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~eea~~l~~~al~~~~~rd~~~g~~v~i  243 (261)
                                                                   +++|  |.|||++++++||..+.+   .+|++++|
T Consensus       177 ---------------------------------------------~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v  208 (248)
T 1iru_D          177 ---------------------------------------------TDEAIETDDLTIKLVIKALLEVVQ---SGGKNIEL  208 (248)
T ss_dssp             ---------------------------------------------CSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCE
T ss_pred             ---------------------------------------------cccccCCHHHHHHHHHHHHHHHHc---CCCCcEEE
Confidence                                                         7899  999999999999999997   47999999


Q ss_pred             EEEEcCC
Q psy10322        244 CAITKDG  250 (261)
Q Consensus       244 ~~itkdg  250 (261)
                      ++|++||
T Consensus       209 ~vi~~~g  215 (248)
T 1iru_D          209 AVMRRDQ  215 (248)
T ss_dssp             EEEESSS
T ss_pred             EEEECCC
Confidence            9999998

>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*

Probab=100.00  E-value=5.1e-37  Score=273.52  Aligned_cols=176  Identities=16%  Similarity=0.204  Sum_probs=161.4

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.+. +.+++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  104 (246)
T 1j2p_A           31 VKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKID-----EHICAATSGLVADARVLIDRARIEAQINRLTYD  104 (246)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEEC-----CCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhC
Confidence            4579999999999999999999999985 5578999999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHh--ccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMY--GKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly--~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++.+|++++++++  .++  .|||+|++||||||  ++|+||++||.|++.++++.|+|+|+.+++++||+.|   
T Consensus       105 ~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~---  179 (246)
T 1j2p_A          105 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY---  179 (246)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHh---
Confidence            99999999999999994  433  57999999999999  5699999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||++++++||..+.+| ..+|++++|++
T Consensus       180 ---------------------------------------------~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~v  213 (246)
T 1j2p_A          180 ---------------------------------------------RDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGY  213 (246)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEE
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEE
Confidence                                                         78999999999999999999998 78899999999


Q ss_pred             EE-cC-CEEE
Q psy10322        246 IT-KD-GIKE  253 (261)
Q Consensus       246 it-kd-g~~~  253 (261)
                      |+ ++ |++.
T Consensus       214 i~~~~~~~~~  223 (246)
T 1j2p_A          214 VKVDDRTFKE  223 (246)
T ss_dssp             EETTTCCCEE
T ss_pred             EEcCCCceEE
Confidence            99 64 5543

>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H

Probab=100.00  E-value=1.3e-37  Score=285.22  Aligned_cols=180  Identities=21%  Similarity=0.263  Sum_probs=148.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +.+|+|+|||+++||||||+|+|+++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~  128 (291)
T 2jay_A           54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITD-----DYTATGIAGTAAVAVEFARLYAVELEHYEKLEG  128 (291)
T ss_dssp             ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeC-----CcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcC
Confidence            578999999999999999999999999889999999999999     99999875           78889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc---cCCcceEEEEEEEcCCCC-----eEEEEECCCCcee--ecCEEEEecChHHHHHHHH
Q psy10322         90 KVMSTTSLAKMISIMMYGKR---FFPYYTSTIIAGLDPEGK-----GCVYSYDPIGHTE--RANFRAGGSSGALLQALLD  159 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D~~g~-----p~Ly~iDp~Gs~~--~~~~~a~G~g~~~~~~~Le  159 (261)
                      .+++++.+|+++++++|.++   ++||+|++||||||++++     |+||++||.|++.  ++++.|+|+|+.+++++||
T Consensus       129 ~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le  208 (291)
T 2jay_A          129 VPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMK  208 (291)
T ss_dssp             SCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHH
Confidence            99999999999999999875   469999999999998766     9999999999988  8999999999999999999


Q ss_pred             hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322        160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD  239 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~  239 (261)
                      +.|                                                +++||.|||++++++||..+++||+.+|+
T Consensus       209 ~~~------------------------------------------------~~~ms~eEAi~la~~aL~~a~~~D~~sg~  240 (291)
T 2jay_A          209 KLY------------------------------------------------SQVTDGDSGLRVAVEALYDAADDDSATGG  240 (291)
T ss_dssp             HHG------------------------------------------------GGCCSHHHHHHHHHHHHHHC---------
T ss_pred             Hhc------------------------------------------------CCCCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence            987                                                78999999999999999999999999886


Q ss_pred             c--E-----EEEEEEcCCEEE
Q psy10322        240 G--V-----HLCAITKDGIKE  253 (261)
Q Consensus       240 ~--v-----~i~~itkdg~~~  253 (261)
                      .  +     +|++|++||+++
T Consensus       241 ~e~vr~~~~~v~vi~~dg~~~  261 (291)
T 2jay_A          241 PDLVRGIFPTAVIIDADGAVD  261 (291)
T ss_dssp             -------CCEEEEEETTEEEE
T ss_pred             cccccccCCEEEEEECCCeEE
Confidence            4  2     699999999765

>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E

Probab=100.00  E-value=2e-37  Score=279.36  Aligned_cols=175  Identities=14%  Similarity=0.128  Sum_probs=160.8

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.|..   ++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~  100 (263)
T 1iru_F           29 VKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVD-----NHIGISIAGLTADARLLCNFMRQECLDSRFVFD  100 (263)
T ss_dssp             HHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEc-----CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999999852   5889999999     99999876           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|+++++++|.+    ..|||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|   
T Consensus       101 ~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~---  176 (263)
T 1iru_F          101 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM---  176 (263)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHH---
T ss_pred             CCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHh---
Confidence            9999999999999999742    3579999999999997 5699999999999999999999999999999999988   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcc-cCCCCcEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERD-IYTGDGVH  242 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd-~~~g~~v~  242 (261)
                                                                   ++  +||+|||++++++||..+.+|| ..+|++++
T Consensus       177 ---------------------------------------------~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~ie  211 (263)
T 1iru_F          177 ---------------------------------------------SEFMECNLNELVKHGLRALRETLPAEQDLTTKNVS  211 (263)
T ss_dssp             ---------------------------------------------HHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEE
T ss_pred             ---------------------------------------------cccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEE
Confidence                                                         44  8999999999999999999999 57899999


Q ss_pred             EEEEEcC-CEE
Q psy10322        243 LCAITKD-GIK  252 (261)
Q Consensus       243 i~~itkd-g~~  252 (261)
                      |++|+++ |++
T Consensus       212 v~vi~~~~~~~  222 (263)
T 1iru_F          212 IGIVGKDLEFT  222 (263)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCCCeE
Confidence            9999999 444

>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D

Probab=100.00  E-value=7.3e-37  Score=274.35  Aligned_cols=181  Identities=12%  Similarity=0.125  Sum_probs=154.3

Q ss_pred             hhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------
Q psy10322          7 QILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------   75 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------   75 (261)
                      |.........+.++ .+|+|+|||+++||||||+|+|        +++.+|||+|+     +|++|+++           
T Consensus        11 ~~~~~r~EYA~~av-~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~   76 (248)
T 3mi0_A           11 QAMRERSELARKGI-ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELY-----DRVGFAAAGKFNEFDNLRR   76 (248)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEE-----TTEEEEEEECHHHHHHHHH
T ss_pred             HhcccchHHHHHHH-hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEEC-----CCEEEEEccCHHHHHHHHH
Confidence            33333445556675 5799999999999999999999        46889999999     99999886           


Q ss_pred             HHHHHHHhhhhhcC-CcCCHHHHHHHHHHHH---hccccCCcceEEEEEEEcC---CCCeEEEEECCCCceee-cCEEEE
Q psy10322         76 ITILPFQMYLHEHN-KVMSTTSLAKMISIMM---YGKRFFPYYTSTIIAGLDP---EGKGCVYSYDPIGHTER-ANFRAG  147 (261)
Q Consensus        76 ~lr~~~~~y~~~~g-~~isv~~lA~~Is~~l---y~~r~~P~~v~~IVaG~D~---~g~p~Ly~iDp~Gs~~~-~~~~a~  147 (261)
                      .++.+++.|++.++ .+++++.+|+++++.+   |+++++||+|++||||||+   +++|+||++||+|++.+ ++++|+
T Consensus        77 ~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~  156 (248)
T 3mi0_A           77 GGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVM  156 (248)
T ss_dssp             HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEE
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEE
Confidence            44455566699999 8999999999999543   5457899999999999997   47799999999999995 999999


Q ss_pred             ecChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHH
Q psy10322        148 GSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAF  227 (261)
Q Consensus       148 G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al  227 (261)
                      |+|+.+++++||+.|                                                +++||.|||++++++||
T Consensus       157 Gsgs~~a~~~Le~~y------------------------------------------------~~~mt~eeai~la~~aL  188 (248)
T 3mi0_A          157 GGTTEPIANALKESY------------------------------------------------AENASLTDALRIAVAAL  188 (248)
T ss_dssp             SSCHHHHHHHHHHHC------------------------------------------------CTTCCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHhhc------------------------------------------------CCCCCHHHHHHHHHHHH
Confidence            999999999999987                                                88999999999999999


Q ss_pred             HHHH-------hcccCCCCcEEEEEEEcCC
Q psy10322        228 TAAA-------ERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       228 ~~~~-------~rd~~~g~~v~i~~itkdg  250 (261)
                      ..++       +|+ .++++++|++|+++|
T Consensus       189 ~~~~~~~~~~~~~~-~~~~~iev~vv~~~g  217 (248)
T 3mi0_A          189 RAGSADTSGGDQPT-LGVASLEVAVLDANR  217 (248)
T ss_dssp             HHC-------------CCTTEEEEEEETTS
T ss_pred             HHHHhhcccCcccc-cCCCcEEEEEEECCC
Confidence            9999       676 568999999999998

>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A

Probab=100.00  E-value=5.5e-37  Score=276.14  Aligned_cols=181  Identities=13%  Similarity=0.182  Sum_probs=158.1

Q ss_pred             hhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------
Q psy10322          7 QILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------   75 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------   75 (261)
                      |.+..+....+.++ .+|+|+|||+++||||||+|+|        +++.+|||+|+     +|++|+++           
T Consensus        11 ~~~~~qvEYA~~av-~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~   76 (259)
T 1q5q_A           11 QIMRDRSELARKGI-ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELY-----DRLGFAAVGKYNEFENLRR   76 (259)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEE-----TTEEEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeC-----CCEEEEEccCHHHHHHHHH
Confidence            33333445556665 5799999999999999999999        37889999999     99999876           


Q ss_pred             HHHHHHHhhhhhcC-CcCCHHHHHHHHHHH---HhccccCCcceEEEEEEEc--C-CCCeEEEEECCCCcee-ecCEEEE
Q psy10322         76 ITILPFQMYLHEHN-KVMSTTSLAKMISIM---MYGKRFFPYYTSTIIAGLD--P-EGKGCVYSYDPIGHTE-RANFRAG  147 (261)
Q Consensus        76 ~lr~~~~~y~~~~g-~~isv~~lA~~Is~~---ly~~r~~P~~v~~IVaG~D--~-~g~p~Ly~iDp~Gs~~-~~~~~a~  147 (261)
                      +++.+++.|.+.++ .+|+++.+|++++++   .|..+++||+|++||||||  + +++|+||++||+|++. ++++.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ai  156 (259)
T 1q5q_A           77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVM  156 (259)
T ss_dssp             HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEE
T ss_pred             HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEE
Confidence            66788888988888 499999999999995   4666789999999999999  3 5679999999999999 7899999


Q ss_pred             ecChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHH
Q psy10322        148 GSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAF  227 (261)
Q Consensus       148 G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al  227 (261)
                      |+|+..++++||+.|                                                +++||+|||++++++||
T Consensus       157 G~gs~~a~~~Le~~~------------------------------------------------~~~ms~eea~~la~~al  188 (259)
T 1q5q_A          157 GGTTEPIATAMRESY------------------------------------------------RADLDLEAAVGIAVNAL  188 (259)
T ss_dssp             SSSHHHHHHHHHHHC------------------------------------------------CTTCCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhhc------------------------------------------------cCCCCHHHHHHHHHHHH
Confidence            999999999999986                                                78999999999999999


Q ss_pred             HHHH-----hcccCCCCcEEEEEEEcCC
Q psy10322        228 TAAA-----ERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       228 ~~~~-----~rd~~~g~~v~i~~itkdg  250 (261)
                      ..+.     +||+ +|++++|++|+++|
T Consensus       189 ~~~~~~~~~~rd~-sg~~iev~vi~~~~  215 (259)
T 1q5q_A          189 RQGGAGEGEKRNV-DVASLEVAVLDQSR  215 (259)
T ss_dssp             TTCC--------C-CSSCSEEEEEETTS
T ss_pred             HHHhhcccccccC-CCCcEEEEEEECCC
Confidence            9999     9999 89999999999994

>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A

Probab=99.98  E-value=1.4e-31  Score=228.55  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=138.7

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCce-eecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhc
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYN-IYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEH   88 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~-i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~   88 (261)
                      .+|+|+|||+++||||||+|+|++.|.+ +.+++.+|||+| +     +|++++++           +++.+++.|+   
T Consensus         3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---   74 (180)
T 2z3b_A            3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFN-----GKVLAGFAGSVADAFTLFEKFEAKLEEYN---   74 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETT-----TTEEEEECSCHHHHHHHHHHHHHHHHHTT---
T ss_pred             CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECC-----CCEEEEeCchHHHHHHHHHHHHHHHHHhc---
Confidence            5799999999999999999999999888 999999999999 9     99999886           7777888776   


Q ss_pred             CCcCCHHHHHHHHHHHHhccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceee--cCEEEEecChHHHHHHHHhhhhcc
Q psy10322         89 NKVMSTTSLAKMISIMMYGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER--ANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        89 g~~isv~~lA~~Is~~ly~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~--~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      +  +.++.++ .+++.+++.+ .|||++++|||  |   +|+||++||.|++.+  +++.|+|+|+.+++++||+.|   
T Consensus        75 g--~~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~---  143 (180)
T 2z3b_A           75 G--NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALK---  143 (180)
T ss_dssp             T--CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHH---
T ss_pred             C--ChHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhh---
Confidence            3  3344444 4567776655 56999999999  4   499999999999987  599999999999999999988   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC---CCCHHHHHHHHHHHHHHHHhcccCCCCcEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT---PVPLEKAISVVKDAFTAAAERDIYTGDGVH  242 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~eea~~l~~~al~~~~~rd~~~g~~v~  242 (261)
                                                                   ++   +||.||   ++++||..+.+||+.+|++++
T Consensus       144 ---------------------------------------------~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~  175 (180)
T 2z3b_A          144 ---------------------------------------------KHAGESMSASE---IARAALETAGEICVYTNDQII  175 (180)
T ss_dssp             ---------------------------------------------HHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCE
T ss_pred             ---------------------------------------------hccCCCCCHHH---HHHHHHHHHHHhcCccCCeEE
Confidence                                                         44   899999   578999999999999999999


Q ss_pred             EEEE
Q psy10322        243 LCAI  246 (261)
Q Consensus       243 i~~i  246 (261)
                      |++|
T Consensus       176 v~~i  179 (180)
T 2z3b_A          176 LEEL  179 (180)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9998

>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A

Probab=99.97  E-value=2.9e-31  Score=224.81  Aligned_cols=156  Identities=15%  Similarity=0.136  Sum_probs=139.1

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      +|+|||+++||||||+|+|++.|.++.+++.+|||+| +     +|++++++           +++.+++.|++      
T Consensus         1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------   69 (174)
T 1g3k_A            1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYN-----GKVLAGFAGGTADAFTLFELFERKLEMHQG------   69 (174)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETT-----TTEEEEEESCHHHHHHHHHHHHHHHHHTTT------
T ss_pred             CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECC-----CCEEEEeCccHHHHHHHHHHHHHHHHHhcC------
Confidence            6899999999999999999999988999999999999 9     99999886           77788887764      


Q ss_pred             CHHHHHHHHHHHHhcccc-CCcceEEEEEEEcCCCCeEEEEECCCCceeecC---EEEEecChHHHHHHHHhhhhccccc
Q psy10322         93 STTSLAKMISIMMYGKRF-FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN---FRAGGSSGALLQALLDNQVGIIQHS  168 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~r~-~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~---~~a~G~g~~~~~~~Le~~~~~~~~~  168 (261)
                      +....+..+++.++++|. +|+  +++++|+|   +|+||++||+|++.+++   +.|+|+|+.+++++||+.|      
T Consensus        70 ~~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~------  138 (174)
T 1g3k_A           70 HLLKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALV------  138 (174)
T ss_dssp             CHHHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHH------
T ss_pred             cHHHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhc------
Confidence            556677788888888774 454  57888887   59999999999999987   9999999999999999988      


Q ss_pred             ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Q psy10322        169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT  247 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~it  247 (261)
                                                                + ++||.+   +++++||..+.+||+.+|++++|++|+
T Consensus       139 ------------------------------------------~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~  173 (174)
T 1g3k_A          139 ------------------------------------------ENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP  173 (174)
T ss_dssp             ------------------------------------------HHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred             ------------------------------------------ccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence                                                      5 789955   799999999999999999999999985

>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4

Probab=99.97  E-value=3.9e-31  Score=223.19  Aligned_cols=155  Identities=17%  Similarity=0.175  Sum_probs=137.4

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      +|+|||+++||||||+|+|.+.|.++.+++.+|||+| +     +|++++++           +++.+++.|+++     
T Consensus         1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----   70 (171)
T 1m4y_A            1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGE-----GKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----   70 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETT-----TTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCC-----CCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----
Confidence            6899999999999999999999989999999999999 9     99999876           778888877744     


Q ss_pred             CHHHHHHHHHHHHhccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceeecC--EEEEecChHHHHHHHHhhhhcccccc
Q psy10322         93 STTSLAKMISIMMYGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN--FRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~--~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      .++.++++.+ .+|++| .+||++++|+|  |   +|+||++||.|++.+++  +.|+|+|+.+++++||+.|       
T Consensus        71 ~~~~~~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~-------  137 (171)
T 1m4y_A           71 LTKAAVELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALL-------  137 (171)
T ss_dssp             HHHHHHHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhc-------
Confidence            2777777654 677766 45799999988  5   59999999999999987  9999999999999999988       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                               + ++||.   ++++++||..+.+||+.+|++++|+++
T Consensus       138 -----------------------------------------~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~  171 (171)
T 1m4y_A          138 -----------------------------------------RNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             -----------------------------------------HHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             -----------------------------------------ccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence                                                     5 78986   678999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1ryp1_	222	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	9e-46
d1iru1_	213	d.153.1.4 (1:) Proteasome beta subunit (catalytic)	4e-39
d1rypj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	2e-33
d1iruj_	204	d.153.1.4 (J:) Proteasome beta subunit (catalytic)	9e-32
d1ryph_	205	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	9e-27
d1iruh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	2e-26
d1j2qh_	202	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	1e-23
d1rypl_	212	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	3e-22
d1ryp2_	233	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	6e-22
d1rypk_	198	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	5e-21
d1irul_	201	d.153.1.4 (L:) Proteasome beta subunit (catalytic)	6e-21
d1iru2_	217	d.153.1.4 (2:) Proteasome beta subunit (catalytic)	9e-20
d1irui_	220	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	1e-19
d1iruk_	199	d.153.1.4 (K:) Proteasome beta subunit (catalytic)	2e-19
d1rypc_	244	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	3e-18
d1rypa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	5e-18
d1rypi_	222	d.153.1.4 (I:) Proteasome beta subunit (catalytic)	6e-18
d1yarh1	203	d.153.1.4 (H:1-203) Proteasome beta subunit (catal	9e-18
d1iruc_	250	d.153.1.4 (C:) Proteasome alpha subunit (non-catal	2e-17
d1irug_	245	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	1e-14
d1rypb_	250	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	1e-14
d1rypg_	244	d.153.1.4 (G:) Proteasome alpha subunit (non-catal	2e-14
d1q5qh_	224	d.153.1.4 (H:) Proteasome beta subunit (catalytic)	3e-14
d1m4ya_	171	d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma	1e-13
d1irub_	233	d.153.1.4 (B:) Proteasome alpha subunit (non-catal	1e-13
d1irud_	243	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	1e-13
d1rypd_	241	d.153.1.4 (D:) Proteasome alpha subunit (non-catal	1e-13
d1iruf_	238	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	1e-13
d1irua_	244	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	6e-13
d1rypf_	233	d.153.1.4 (F:) Proteasome alpha subunit (non-catal	3e-12
d1rype_	242	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	6e-12
d2z3ba1	180	d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus	2e-11
d1irue_	234	d.153.1.4 (E:) Proteasome alpha subunit (non-catal	2e-11
d1yara1	221	d.153.1.4 (A:13-233) Proteasome alpha subunit (non	2e-11
d1q5qa_	227	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	3e-11
d1g3ka_	173	d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i	7e-11
d1j2pa_	243	d.153.1.4 (A:) Proteasome alpha subunit (non-catal	2e-08

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  150 bits (380), Expect = 9e-46
 Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 38/252 (15%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY----RPTYN 69
           F+PY DNGGT + +AG D+A++A DTR    Y+I +R + K+F   D+            
Sbjct: 2   FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 61

Query: 70  FLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC 129
             ++          +   ++K +S  S A+ I  ++YGKRFFPYY  TIIAGLD +GKG 
Sbjct: 62  DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121

Query: 130 VYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
           VYS+DP+G  ER   RAGG++ +L+   LDNQV                           
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEP------------------- 162

Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249
                       G   +       + +E+ I +V+D+FT+A ER I  GDG+ +  +TKD
Sbjct: 163 ------------GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210

Query: 250 GIKEYNFPLRKD 261
           G+++  + L++D
Sbjct: 211 GVRKEFYELKRD 222

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  133 bits (335), Expect = 4e-39
 Identities = 106/251 (42%), Positives = 148/251 (58%), Gaps = 45/251 (17%)

Query: 17  FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY------RPTYNF 70
           FSPY  NGGT +A+AG D+AI+ASDTRLS G++I+TR+  K +               + 
Sbjct: 2   FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61

Query: 71  LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCV 130
           L +  I     +MY H +NK M+T ++A M+S ++Y +RFFPYY   II GLD EGKG V
Sbjct: 62  LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121

Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
           YS+DP+G  +R +F+AGGS+ A+LQ LLDNQV                            
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV---------------------------- 153

Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                      GF+N +NV+  P+ L++A+ +VKD F +AAERD+YTGD + +C +TK+G
Sbjct: 154 -----------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 202

Query: 251 IKEYNFPLRKD 261
           I+E    LRKD
Sbjct: 203 IREETVSLRKD 213

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  118 bits (297), Expect = 2e-33
 Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 53/249 (21%)

Query: 19  PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTY---NFLMI 73
           P S NGG  VA+ G D   IA D RL +     + +  K+F   H +   T    +   +
Sbjct: 3   PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTL 62

Query: 74  FTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE-GKGCVYS 132
             +      +Y  +  + +   +  +++S  +Y +RF PY+   ++AG++ + GK  +  
Sbjct: 63  NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
           +D IG  + A       +                  S Q+  +                 
Sbjct: 123 FDLIGCIDEAKDFIVSGTA-----------------SDQLFGMC---------------- 149

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                         E++ +  +  E     +  A   AA+RD  +G G  +  I KD + 
Sbjct: 150 --------------ESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVV 195

Query: 253 EYNFPLRKD 261
           +    +R+D
Sbjct: 196 KRYLKMRQD 204

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  114 bits (285), Expect = 9e-32
 Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 54/251 (21%)

Query: 18  SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFL 71
           S  S NGG  +A+ G +   IA+D R      + T +  K+F   D  Y        +  
Sbjct: 1   SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQ 60

Query: 72  MIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC-V 130
            +         +Y  +  + +   +L  M++ ++Y KRF PYYT  +IAGLDP+     +
Sbjct: 61  TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFI 120

Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
            S D IG                   ++ +   +    ++QM  +               
Sbjct: 121 CSLDLIGCP-----------------MVTDDFVVSGTCAEQMYGMC-------------- 149

Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                           E++ +  +  +     +  A   A +RD  +G GV +  I KD 
Sbjct: 150 ----------------ESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 193

Query: 251 IKEYNFPLRKD 261
           I       R D
Sbjct: 194 ITTRTLKARMD 204

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (251), Expect = 9e-27
 Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 56/241 (23%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPT----YNFLMIFTI 76
            G + +AV   D  I+ +D+R + G  I  R   KL       +        +   I  I
Sbjct: 8   LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
                ++Y  ++    ST + A +   + Y  +        I+AG D + KG VY+    
Sbjct: 68  VQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLG 125

Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
           G   +  +   GS    +    D                                     
Sbjct: 126 GSVHKLPYAIAGSGSTFIYGYCDKN----------------------------------- 150

Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNF 256
                         +  +  E+ +  +K + + A + D  +G  + +  +T  G++   F
Sbjct: 151 -------------FRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197

Query: 257 P 257
            
Sbjct: 198 Y 198

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (249), Expect = 2e-26
 Identities = 44/238 (18%), Positives = 74/238 (31%), Gaps = 55/238 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITILP-- 80
           T +AV      ++ +D+R + G  I  R   KL    D  +   + +      +      
Sbjct: 2   TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61

Query: 81  -FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
               +  E N+     + A +   M Y +         IIAG DP+  G VYS    G  
Sbjct: 62  QLGFHSIELNEPPLVHTAASLFKEMCY-RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
            R +F  GGS  + +   +D                                        
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDAT-------------------------------------- 142

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFP 257
                      +  +  E+ +    +A   A ERD  +G  + L AI + G++     
Sbjct: 143 ----------YREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLL 190

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 92.6 bits (229), Expect = 1e-23
 Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 54/236 (22%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
           TTV +   D  ++A++ R + G  I ++   K++   D           +   +  I  +
Sbjct: 2   TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
              +Y     +  +  ++A + S ++   R+FPY    +I G+D EGK         G  
Sbjct: 62  EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAI 121

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
           E  +  A GS       +L+++                                      
Sbjct: 122 EEKDIVATGSGSLTAYGVLEDR-------------------------------------- 143

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
                         + +++A+ +   A  +A +RD  +GDG+ +  IT+D   +Y+
Sbjct: 144 ----------FTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYS 189

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (221), Expect = 3e-22
 Identities = 40/235 (17%), Positives = 79/235 (33%), Gaps = 54/235 (22%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
           TT+A       I+A D+R +AG  + ++   ++                +     T    
Sbjct: 2   TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
             +++     + +S  + +K++S ++Y  +       T+I G   +    +Y  D  G  
Sbjct: 62  QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR 121

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
            + +    GS       +LD+                                       
Sbjct: 122 LKGDIFCVGSGQTFAYGVLDSNY------------------------------------- 144

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
                      K  + +E A+ + K +  AAA RD Y+G  V+L  +T+DG   +
Sbjct: 145 -----------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 188

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.0 bits (220), Expect = 6e-22
 Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 57/246 (23%)

Query: 18  SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIF 74
            P    G + +++   +  IIA+D   S G  +      +L    D+     + +   + 
Sbjct: 3   QPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61

Query: 75  TIT-ILPFQMYLHEHN-------KVMSTTSLAKMISIMMYGK--RFFPYYTSTIIAGLDP 124
            I  +L   +  + ++       + +  + + + ++ +MY +  +  P + + I+AG+  
Sbjct: 62  HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS 121

Query: 125 EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
            G   +   + +G T  +   A G    +   LL   V                      
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV---------------------- 159

Query: 185 ALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244
                                    D     ++ A   + +A      RD  +     L 
Sbjct: 160 ---------------------DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLA 198

Query: 245 AITKDG 250
            I K+ 
Sbjct: 199 IIDKNT 204

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.6 bits (211), Expect = 5e-21
 Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 57/237 (24%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
             + +   D  I+AS   ++ G ++      K      H          + +        
Sbjct: 3   IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMM--YGKRFFPYYTSTIIAGLDPEGKGCV-YSYDPI 136
             Q+Y    +  +S  +++  +   +    +   PY  + +I G D +      Y  D +
Sbjct: 63  NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122

Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
           G      + A G SG    +LLD+                                    
Sbjct: 123 GTKVELPYGAHGYSGFYTFSLLDHH----------------------------------- 147

Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
                         +  +  E+ + ++K       +R      GV +  + KDGI++
Sbjct: 148 -------------YRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQ 191

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.6 bits (211), Expect = 6e-21
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 55/235 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
           TT+A       I+A+D+R +AG  I ++   K+     +          +      +   
Sbjct: 2   TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
             ++Y   + + +S  + +K+++ M+Y  +       T+I G D  G G  Y  D  G+ 
Sbjct: 62  QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY-VDSEGNR 120

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
                 + GS       ++D                                        
Sbjct: 121 ISGATFSVGSGSVYAYGVMDRGY------------------------------------- 143

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
                         + +E+A  + + A   A  RD Y+G  V+L  + +DG    
Sbjct: 144 -----------SYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 187

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.9 bits (204), Expect = 9e-20
 Identities = 34/246 (13%), Positives = 69/246 (28%), Gaps = 57/246 (23%)

Query: 18  SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY----RPTYNF 70
           +P    G + + V      +IA+D   S G     R  S++    +              
Sbjct: 3   NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61

Query: 71  LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGK--RFFPYYTSTIIAGLDPEGKG 128
            +   +  +     L       S  ++   ++  MY +  +  P + + +I G   +G+ 
Sbjct: 62  YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA-DGES 120

Query: 129 CVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTR 188
            +   D +G    A   A G    L Q LL   +      S+                  
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQ------------------ 162

Query: 189 EINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK 248
                                        +A  +V+        RD  + +      +T+
Sbjct: 163 ----------------------------TEARDLVERCMRVLYYRDARSYNRFQTATVTE 194

Query: 249 DGIKEY 254
            G++  
Sbjct: 195 KGVEIE 200

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.5 bits (203), Expect = 1e-19
 Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 56/233 (24%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
           T   V   D  ++ +DTR + G  +  +  SK+     + Y        +  M   +   
Sbjct: 2   TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
             +++     ++    +  +M+   M  +       + ++ G+D  G    YS  P G T
Sbjct: 62  NLELHSLSTGRLPRVVTANRMLK-QMLFRYRGYIGAALVLGGVDVTGPHL-YSIYPHGST 119

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
           ++  +   GS      A+ +++                                      
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDK-------------------------------------- 141

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                      +  +  E+A ++V +A  A    D+ +G  + LC I+K+ + 
Sbjct: 142 ----------FRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLD 184

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.1 bits (199), Expect = 2e-19
 Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 57/245 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYY---YRPTYNFLMIFTITIL 79
             + + GPDY ++ASD   ++       +  K+F   +           + +        
Sbjct: 3   YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMM--YGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
             Q+Y   +   +S T+ A      +    +   PY+ + ++AG D      +Y  D + 
Sbjct: 63  NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122

Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
              +A F                      + +    S                       
Sbjct: 123 ALAKAPF------------------AAHGYGAFLTLS----------------------- 141

Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY-NF 256
                    +      +  E+A+ +++       +R I       +  I K+GI +  N 
Sbjct: 142 -------ILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194

Query: 257 PLRKD 261
              K 
Sbjct: 195 SFPKQ 199

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.4 bits (195), Expect = 3e-18
 Identities = 31/244 (12%), Positives = 73/244 (29%), Gaps = 58/244 (23%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY---NFLMIFTI 76
           + GT + +   D  ++A++ ++++          KL+   D           +  ++   
Sbjct: 30  HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYS 132
             +  Q YL  +N+ +    L + +S +  G        P+  S I AG D      +Y+
Sbjct: 90  ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYT 149

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
            +P G+                          +  ++   +++L                
Sbjct: 150 SNPSGNYTGWKAI------------------SVGANTSAAQTLL---------------- 175

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                         +   K  + ++ AI +     +   +    T D +    I K    
Sbjct: 176 --------------QMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 221

Query: 253 EYNF 256
              +
Sbjct: 222 GEVY 225

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.2 bits (192), Expect = 5e-18
 Identities = 30/243 (12%), Positives = 60/243 (24%), Gaps = 53/243 (21%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFTI 76
               ++AV G D  ++ S  ++     +     S +F            P  +       
Sbjct: 29  TNINSLAVRGKDCTVVISQKKVPDKL-LDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYS 132
                  + +++   M    LAK ++ +           P         +D E    +Y 
Sbjct: 88  AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYK 147

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
            DP G+       A G     +   L+N                                
Sbjct: 148 TDPAGYYVGYKATATGPKQQEITTNLENH------------------------------- 176

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                     F+  +         EK +         A   +  + + + +   TKD   
Sbjct: 177 ----------FKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKFF 225

Query: 253 EYN 255
             +
Sbjct: 226 TLS 228

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (191), Expect = 6e-18
 Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 56/235 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
           T V V   +  +IA+DTR + G  +  +  +KL       +        +   +  +   
Sbjct: 2   TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
             +++    ++     S  +M+   ++ K         I+AG+DP G    +S    G T
Sbjct: 62  NIELHSLYTSREPRVVSALQMLKQHLF-KYQGHIGAYLIVAGVDPTGSHL-FSIHAHGST 119

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
           +   + + GS      A+L++                                       
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHW------------------------------------- 142

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
                      K  +  E+AI +  DA  A    D+ +G  V +C +      EY
Sbjct: 143 -----------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 186

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 77.1 bits (189), Expect = 9e-18
 Identities = 39/237 (16%), Positives = 82/237 (34%), Gaps = 57/237 (24%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
           TTV +   D  I+A++ R++    I  +   KLF    +          +  ++      
Sbjct: 2   TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
             ++Y  +    M   ++A ++S M+   ++ PY    ++ G+D        S D  G +
Sbjct: 62  ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVF--SIDAAGGS 119

Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
               + + GS    +  +L++Q                                      
Sbjct: 120 VEDIYASTGSGSPFVYGVLESQ-------------------------------------- 141

Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT-KDGIKEYN 255
                         + +++ + +V  A +AA +RD  +G  + +  IT KDG  +  
Sbjct: 142 ----------YSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLP 188

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 28/242 (11%), Positives = 70/242 (28%), Gaps = 57/242 (23%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY---NFLMIFT 75
            + GT + +   D  ++A++ R             K++   +           +  ++  
Sbjct: 28  GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTN 87

Query: 76  ITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVY 131
              L  Q YL ++ + +    L   +  +      F    P+  S +  G D      +Y
Sbjct: 88  ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLY 147

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
             DP G+         G++ A   ++L                                 
Sbjct: 148 QSDPSGNYGGWKATCIGNNSAAAVSMLK-------------------------------- 175

Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
                          ++  +  + L+ A+++         +    + + V +  +T++  
Sbjct: 176 ---------------QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 220

Query: 252 KE 253
           K 
Sbjct: 221 KT 222

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 245

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (169), Expect = 1e-14
 Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 11/150 (7%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFT 75
           +N  T + +   D  +   +  +            +LF    H          +   +  
Sbjct: 31  ENSSTAIGIRCKDGVVFGVEKLVL-SKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89

Query: 76  ITILPFQMYLHEHNKVMSTTSLAKMISIMM----YGKRFFPYYTSTIIAGLDPEGKGCVY 131
           I       +       +    LA  +++ +          P+  S ++          +Y
Sbjct: 90  IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLY 149

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQ 161
             DP G +      A G +    +  ++  
Sbjct: 150 MIDPSGVSYGYWGCAIGKARQAAKTEIEKL 179

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 250

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 12/150 (8%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR----PTYNFLMIFT 75
            G T++ +   +  +IA++ + S+     +   SK+                   +++  
Sbjct: 30  QGVTSLGIKATNGVVIATEKKSSSPL-AMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88

Query: 76  ITILPFQMYLHEHNKVMSTTSLAKMISIMM----YGKRFFPYYTSTIIAGLDPEGKGCVY 131
              +    Y   + +   T  L   ++ +M          P+  S +IAG D      +Y
Sbjct: 89  SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLY 148

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQ 161
             DP G        A G      +  L+ +
Sbjct: 149 QVDPSGSYFPWKATAIGKGSVAAKTFLEKR 178

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.5 bits (167), Expect = 2e-14
 Identities = 28/249 (11%), Positives = 65/249 (26%), Gaps = 57/249 (22%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFTI 76
           NG T++ +   D  + A +  +++   +  +   K+     H          +   +   
Sbjct: 29  NGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVNR 87

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYS 132
                  +   +   +   + A  +   +     +    P+  STI  G+D  G   +Y 
Sbjct: 88  GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYM 146

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
            +P G        A G      +A L+                                 
Sbjct: 147 LEPSGSYWGYKGAATGKGRQSAKAELEK-------------------------------- 174

Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
                   L   + E +        +A+         A E +      + +   +     
Sbjct: 175 --------LVDHHPEGLS-----AREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETN 221

Query: 253 EYNFPLRKD 261
             +  ++ D
Sbjct: 222 GLHKFVKGD 230

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 38/252 (15%), Positives = 69/252 (27%), Gaps = 71/252 (28%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYY---YRPTYNFLMIFTITIL 79
           T VA+      ++A D R + G  I +R+  K++   ++            + +  +  +
Sbjct: 2   TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61

Query: 80  PFQMYLHEHNKVMSTTSLAKMISIMMY--------GKRFFPYYTSTIIAGLDPEGKGCVY 131
             + Y       ++    A  ++ M+         G    P      +   D    G + 
Sbjct: 62  ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121

Query: 132 SYDPIGH--TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
           SYD +G    ERA + A GS     ++ L                               
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKI---------------------------- 153

Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD-------GVH 242
                                      E A+    ++   AA+ D  TG           
Sbjct: 154 --------------------YSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPT 193

Query: 243 LCAITKDGIKEY 254
              IT+ G    
Sbjct: 194 AVTITQAGAVHV 205

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

 Score = 65.1 bits (158), Expect = 1e-13
 Identities = 27/216 (12%), Positives = 52/216 (24%), Gaps = 51/216 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYL 85
           T + V      ++  D +++ G  +      K+      +    F       +  F  + 
Sbjct: 2   TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61

Query: 86  HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFR 145
            +  +     + A +     +           ++   D E    + S +        +  
Sbjct: 62  AKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKEN-IFIISGNGEVIQPDDDAA 120

Query: 146 AGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRN 205
           A GS G    A                                                 
Sbjct: 121 AIGSGGPYALAAAK--------------------------------------------AL 136

Query: 206 QENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
             N D +      A  +V+ A T A E  IYT   +
Sbjct: 137 LRNTDLS------AREIVEKAMTIAGEICIYTNQNI 166

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (161), Expect = 1e-13
 Identities = 29/244 (11%), Positives = 67/244 (27%), Gaps = 63/244 (25%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYR--------PTYNFLMIF 74
            G  +V +   +  ++A++ +  +      R   K+     +         P Y  L+  
Sbjct: 30  GGAPSVGIKAANGVVLATEKKQKSIL-YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88

Query: 75  TITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRF---FPYYTSTIIAGLDPEGKGCVY 131
              +   Q Y   + + + T  L + ++ +M           +  +++     EG+  ++
Sbjct: 89  ARKLA--QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 146

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
             DP G        A G +    +  L+ +                              
Sbjct: 147 QSDPSGAYFAWKATAMGKNYVNGKTFLEKR------------------------------ 176

Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
                                 + LE AI         + E  + T D + +    + G 
Sbjct: 177 ------------------YNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGF 217

Query: 252 KEYN 255
           +   
Sbjct: 218 RRLT 221

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 11/149 (7%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT---YNFLMIFTI 76
            G T V V G D  ++  + + S       R   K+    D+          +  ++   
Sbjct: 27  KGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMY----GKRFFPYYTSTIIAGLDPEGKGCVYS 132
             +  Q +       ++   + + I+ +           P+  S +I G D +G   +Y 
Sbjct: 86  ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQ 145

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQ 161
            DP G        A G     ++  L+  
Sbjct: 146 TDPSGTYHAWKANAIGRGAKSVREFLEKN 174

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 11/170 (6%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR-----PTYNFLMIF 74
            G   V V G +  ++  + R +          SK+     H              L+  
Sbjct: 27  RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86

Query: 75  TITILPFQ--MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGCVY 131
                                T  +A +           P+  ST+IAG DP   +  +Y
Sbjct: 87  ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLY 146

Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRT 181
             +P G     + +  G +   ++  L+      +  +   + V   +R+
Sbjct: 147 QTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRS 196

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 238

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 8/147 (5%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY---RPTYNFLMIFTITI 78
             G  TV +    +A++ +  R  +    + ++   + +H        T +  ++     
Sbjct: 27  KQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMR 86

Query: 79  LPFQMYLHEHNKVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYD 134
                     ++ +  + L  +I              PY    +IAG D  G   ++   
Sbjct: 87  QECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP-HIFQTC 145

Query: 135 PIGHTERANFRAGGSSGALLQALLDNQ 161
           P  +       + G+     +  L+  
Sbjct: 146 PSANYFDCRAMSIGARSQSARTYLERH 172

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 244

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.6 bits (157), Expect = 6e-13
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 12/180 (6%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT-------YNFLM 72
            G T+VAV G D A+I +  ++     + +   + LF   ++     T            
Sbjct: 34  GGLTSVAVRGKDCAVIVTQKKVPDKL-LDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92

Query: 73  IFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYS 132
                      Y +E    M    +A +  +        P     I+ G+D E    VY 
Sbjct: 93  ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYK 152

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
            DP G+       A G       + L+ +V      + +       I      L+ +   
Sbjct: 153 CDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVET-AITCLSTVLSIDFKP 211

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (151), Expect = 3e-12
 Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 52/236 (22%)

Query: 22  DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT---YNFLMIFTITI 78
             G  TV +    +A++ +  R +   + Y ++  K  +H          +  ++     
Sbjct: 29  KQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLR 88

Query: 79  LPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYSYD 134
                     N+ ++      ++              PY    +I G D  G   +  + 
Sbjct: 89  QQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHLLEFQ 147

Query: 135 PIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALS 194
           P G+       A G+     +  L+  +                                
Sbjct: 148 PSGNVTELYGTAIGARSQGAKTYLERTL-------------------------------- 175

Query: 195 SKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
                       +   K     ++ I    +A + +   +  T D + +  + KD 
Sbjct: 176 ------------DTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDT 219

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 242

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.6 bits (149), Expect = 6e-12
 Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 17/155 (10%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT---YNFLMIFTI 76
            G T + +A  +  ++  + R ++   + +    K+     H     +    +   +   
Sbjct: 25  LGSTAIGIATKEGVVLGVEKRATSPL-LESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMY----------GKRFFPYYTSTIIAGLDPEG 126
                  +   +++ ++  SL + +  +                 P+  + +IAG D + 
Sbjct: 84  ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD 143

Query: 127 KGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161
              ++  +P G   R N +A GS     QA L N+
Sbjct: 144 GYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNE 178

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 19/219 (8%), Positives = 44/219 (20%), Gaps = 48/219 (21%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQ 82
           +  T  AV     + ++ D +++ G  +  +  ++     +                   
Sbjct: 4   HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLF 63

Query: 83  MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA 142
                  +  +       + +    +          +  +  +    + S          
Sbjct: 64  EKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDD 123

Query: 143 NFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLG 202
              A GS G    A                                              
Sbjct: 124 GILAIGSGGNYALAAGRALK---------------------------------------- 143

Query: 203 FRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
                   K       A  + + A   A E  +YT D +
Sbjct: 144 --------KHAGESMSASEIARAALETAGEICVYTNDQI 174

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 234

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 17/154 (11%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY------RPTYNFLMIFTI 76
            G T + +   +   +A + R+++   +      K+ +   +          +   +   
Sbjct: 26  LGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMY---------GKRFFPYYTSTIIAGLDPEGK 127
             +  Q +   +N+ M+  S+ + +S +           G    P+  + +  G+D +G 
Sbjct: 85  ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG- 143

Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161
             ++  DP G   + + RA GS+    Q+ L   
Sbjct: 144 PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEL 177

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 12/149 (8%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYR------PTYNFLMIFTI 76
            G T + +   +  ++ SD ++ +   I      K+     Y          +  ++   
Sbjct: 21  KGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79

Query: 77  TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYS 132
             +  Q     +  +++  +L K ++  M     +    PY  S I AG+D  G    + 
Sbjct: 80  ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRL-FD 138

Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQ 161
            DP G        A GS    + + L+ +
Sbjct: 139 CDPAGTINEYKATAIGSGKDAVVSFLERE 167

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 227

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY---RPTYNFLMIFTITIL 79
            G + V +   D  +  ++   +A + +      +L+D   +        F  +    I+
Sbjct: 18  RGRSVVVLTFRDGVLFVAENPSTALHKVS-----ELYDRLGFAAVGKYNEFENLRRAGIV 72

Query: 80  PFQMYLHEHNKV-MSTTSLAKMISIMM---YGKRFFPYYTSTIIAGLDP---EGKGCVYS 132
              M  + +++  ++  SLA   +  +   + ++  PY     +A +          +Y 
Sbjct: 73  HADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYR 132

Query: 133 YDPIGHT--ERANFRAGGSSGALLQALLDN 160
               G    E+     GG++  +  A+ ++
Sbjct: 133 ITYDGSIVDEQHFVVMGGTTEPIATAMRES 162

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

 Score = 57.5 bits (138), Expect = 7e-11
 Identities = 22/216 (10%), Positives = 51/216 (23%), Gaps = 50/216 (23%)

Query: 26  TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYL 85
           T V+V      ++  D ++S G  +      K+   Y  +    F          F+++ 
Sbjct: 2   TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61

Query: 86  HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFR 145
            +          + +     +           ++   D +    +     +   E     
Sbjct: 62  RKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQIL 121

Query: 146 AGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRN 205
           A GS G    +                                                 
Sbjct: 122 AIGSGGNYALSAAR--------------------------------------------AL 137

Query: 206 QENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
            EN + +      A  +V+ +   A +  ++T    
Sbjct: 138 VENTELS------AHEIVEKSLRIAGDICVFTNTNF 167

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 243

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.6 bits (123), Expect = 2e-08
 Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 17/151 (11%)

Query: 23  NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR-----PTYNFLMIF 74
            G T + +   +  I+ +D R+ +          K++   +H              L+  
Sbjct: 30  RGATAIGIKCKEGVILIADKRVGSKLLEK-DTIEKIYKIDEHICAATSGLVADARVLIDR 88

Query: 75  TITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCV 130
                  Q+    ++  ++   LAK I         +    P+  S +IAG++      +
Sbjct: 89  ARIEA--QINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE--VPKL 144

Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQ 161
           Y  DP G        A G     +    + +
Sbjct: 145 YETDPSGALLEYKATAIGMGRMAVTEFFEKE 175

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1ryp1_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iru1_	213	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypj_	204	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruj_	204	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1ryph_	205	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1iruh_	202	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1irul_	201	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypl_	212	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypk_	198	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1irui_	220	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1ryp2_	233	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1yarh1	203	Proteasome beta subunit (catalytic) {Archaeon Ther	100.0
d1j2qh_	202	Proteasome beta subunit (catalytic) {Archaeon Arch	100.0
d1iru2_	217	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1iruc_	250	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypc_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1iruk_	199	Proteasome beta subunit (catalytic) {Cow (Bos taur	100.0
d1rypi_	222	Proteasome beta subunit (catalytic) {Baker's yeast	100.0
d1rypa_	243	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irua_	244	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rype_	242	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irug_	245	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1yara1	221	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rypb_	250	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irue_	234	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1rypf_	233	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irub_	233	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1j2pa_	243	Proteasome alpha subunit (non-catalytic) {Archaeon	100.0
d1rypg_	244	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1q5qh_	224	Proteasome beta subunit (catalytic) {Rhodococcus e	100.0
d1rypd_	241	Proteasome alpha subunit (non-catalytic) {Baker's	100.0
d1irud_	243	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1iruf_	238	Proteasome alpha subunit (non-catalytic) {Cow (Bos	100.0
d1q5qa_	227	Proteasome alpha subunit (non-catalytic) {Rhodococ	100.0
d1g3ka_	173	HslV (ClpQ) protease {Haemophilus influenzae [TaxI	99.93
d2z3ba1	180	HslV (ClpQ) protease {Bacillus subtilis [TaxId: 14	99.92
d1m4ya_	171	HslV (ClpQ) protease {Thermotoga maritima [TaxId:	99.92

>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.6e-46  Score=323.01  Aligned_cols=210  Identities=42%  Similarity=0.728  Sum_probs=187.3

Q ss_pred             cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322         16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY   84 (261)
Q Consensus        16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y   84 (261)
                      .|+||++||||+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++++++           +++.+++.|
T Consensus         1 ~~~py~~nG~Tivgi~~~dgVviaaD~r~s~~~~i~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~   75 (222)
T d1ryp1_           1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCG-----DNIVMSANGFAADGDALVKRFKNSVKWY   75 (222)
T ss_dssp             CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEECS-----TTCEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCCcEEEEEEECCEEEEEECCCcccCCEeccCCcceEEEec-----CCEEEEeccChHHHHHHHHHHHHHhhhh
Confidence            49999999999999999999999999999999999999999999999     99999876           788889999


Q ss_pred             hhhcC-CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhh
Q psy10322         85 LHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVG  163 (261)
Q Consensus        85 ~~~~g-~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~  163 (261)
                      ++.++ ..+++..++++++.++|.+|.+||+|+++|||+|++|+|+||++||+|++.+++++|+|+|+.+++++||+.|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~  155 (222)
T d1ryp1_          76 HFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVN  155 (222)
T ss_dssp             HHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTS
T ss_pred             hhhcCCCCCcHHHHHHHHHHHHHhhhhhhheeeeeEEEEeCCCCeEEEEECCCcEEEEeceEEEcccHHHHHHHHHHhhc
Confidence            88876 57899999999999999999999999999999999999999999999999999999999999999999999982


Q ss_pred             cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322        164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL  243 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i  243 (261)
                      .-..    ++-..                           ......+.++||.+||++++++||..+.+||+.+|++++|
T Consensus       156 ~~~~----~~~~~---------------------------~~~~~~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~v~v  204 (222)
T d1ryp1_         156 FKNQ----YEPGT---------------------------NGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEI  204 (222)
T ss_dssp             CTTC----BCTTS---------------------------TTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEE
T ss_pred             cccc----cCccc---------------------------chhhhcccccccHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence            1110    00000                           0001134689999999999999999999999999999999


Q ss_pred             EEEEcCCEEEEeeccCCC
Q psy10322        244 CAITKDGIKEYNFPLRKD  261 (261)
Q Consensus       244 ~~itkdg~~~~~~~~r~~  261 (261)
                      ++|||||++++.+++|+|
T Consensus       205 ~iitkdGv~~~~~~l~~D  222 (222)
T d1ryp1_         205 LIVTKDGVRKEFYELKRD  222 (222)
T ss_dssp             EEEETTEEEEEEEECCCC
T ss_pred             EEEeCCCEEEEEEecCCC
Confidence            999999999999999998

>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-45  Score=313.83  Aligned_cols=202  Identities=52%  Similarity=0.919  Sum_probs=192.2

Q ss_pred             cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322         16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY   84 (261)
Q Consensus        16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y   84 (261)
                      .|+||+.||||+|||+++||||||+|+|++.|.++.+++.+|||+|+     +|++++++           +++.+++.|
T Consensus         1 ~f~p~~~nG~Tivai~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~~D~~~l~~~~~~~~~~~   75 (213)
T d1iru1_           1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLT-----DKTVIGCSGFHGDCLTLTKIIEARLKMY   75 (213)
T ss_dssp             CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccCCCcEEEEEEECCEEEEEECCccccCceeeccccCEEEEcC-----CCEEEEecCccchHHHHHHHHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999     99999875           888899999


Q ss_pred             hhhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         85 LHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        85 ~~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      ++.++.+++++.+++++++.+|.++.+|++++.+++|+|.+++|++|.+||.|++.++++.|+|+|+.+++++||+.|  
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~l~~~~--  153 (213)
T d1iru1_          76 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV--  153 (213)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHT--
T ss_pred             HHhhCCchhHHHHHHHHHHHHHHHHhhhcccccceEEEecCCCcEEEecCCcceeeecCeeeecCccHHHHHHHHHhh--
Confidence            999999999999999999999999899999999999999999999999999999999999999999999999999987  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                           .++.++..|.++||.|||++++++||..+.+||+.+|++++|+
T Consensus       154 -------------------------------------~~~~~~~~~~~~~s~~ea~~~~~~~l~~~~~~d~~sg~~~~v~  196 (213)
T d1iru1_         154 -------------------------------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRIC  196 (213)
T ss_dssp             -------------------------------------TCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEE
T ss_pred             -------------------------------------cccchhcccccCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence                                                 3344455788999999999999999999999999999999999


Q ss_pred             EEEcCCEEEEeeccCCC
Q psy10322        245 AITKDGIKEYNFPLRKD  261 (261)
Q Consensus       245 ~itkdg~~~~~~~~r~~  261 (261)
                      +|||||++++.+++|+|
T Consensus       197 ~i~k~G~~~~~~~~r~D  213 (213)
T d1iru1_         197 IVTKEGIREETVSLRKD  213 (213)
T ss_dssp             EEETTEEEEEEEECCCC
T ss_pred             EEeCCCEEEEEEeccCC
Confidence            99999999999999998

>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-44  Score=305.33  Aligned_cols=190  Identities=25%  Similarity=0.436  Sum_probs=178.6

Q ss_pred             cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322         18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH   86 (261)
Q Consensus        18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~   86 (261)
                      +||..||||+|||+++||||||+|+|.++|.++..++.+|||+++     + ++++++           +++.+++.|++
T Consensus         2 ~p~~~nG~Tivgi~~~d~VvlaaD~r~~~~~~~~~~~~~Ki~~i~-----~-i~~~~~G~~~D~~~l~~~~~~~~~~~~~   75 (204)
T d1rypj_           2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-----H-VFLGITGLATDVTTLNEMFRYKTNLYKL   75 (204)
T ss_dssp             CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-----T-EEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCCeEEEEEEECCEEEEEEcCCcccCCEeecCcccEEEEcC-----C-EEEEecCcchHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999987     4 667654           88889999999


Q ss_pred             hcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcC-CCCeEEEEECCCCceeec-CEEEEecChHHHHHHHHhhhhc
Q psy10322         87 EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERA-NFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        87 ~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~-~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      +++.+++++.+|+++++++|.++.+||+|++|+||||+ +|+|+||++||+|++.++ .++++|+|+.+++++||+.|  
T Consensus        76 ~~~~~~~~~~la~~l~~~l~~~~~~p~~v~~li~G~d~~~g~~~L~~~D~~G~~~~~~~~~~~G~g~~~a~~~l~~~~--  153 (204)
T d1rypj_          76 KEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY--  153 (204)
T ss_dssp             HHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--
T ss_pred             hcCCCCcchHHHHHHHHHHHhhcccceeeeEEEEEEecCCCcceEEEeCCCCccccccCcEEeecchHHHHHHHHhcc--
Confidence            99999999999999999999998899999999999996 567999999999998876 58999999999999999975  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                    +++||++||++++++||..+.+||+.+|++++|+
T Consensus       154 ----------------------------------------------~~~ms~~ea~~l~~~al~~a~~~d~~sg~~~~v~  187 (204)
T d1rypj_         154 ----------------------------------------------EPNLEPEDLFETISQALLNAADRDALSGWGAVVY  187 (204)
T ss_dssp             ----------------------------------------------CSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEE
T ss_pred             ----------------------------------------------ccCCCHHHHHHHHHHHHHHHHHhcCccCCeEEEE
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             EEEcCCEEEEeeccCCC
Q psy10322        245 AITKDGIKEYNFPLRKD  261 (261)
Q Consensus       245 ~itkdg~~~~~~~~r~~  261 (261)
                      +|+|||++++.+++|+|
T Consensus       188 ii~kdg~~~~~~~l~~D  204 (204)
T d1rypj_         188 IIKKDEVVKRYLKMRQD  204 (204)
T ss_dssp             EEESSCEEEEEECCCCC
T ss_pred             EEECCceEEEEeccCCC
Confidence            99999999999999998

>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-44  Score=307.35  Aligned_cols=191  Identities=27%  Similarity=0.415  Sum_probs=180.8

Q ss_pred             cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322         18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH   86 (261)
Q Consensus        18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~   86 (261)
                      +++..||+|+|||+++||||||+|+|++.|.++.+++.+|||+|+     +|++++++           +++.+++.|++
T Consensus         1 ~~~~~nG~Tvigi~~~dgVvlaaD~r~s~g~~~~~~~~~Ki~~I~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~   75 (204)
T d1iruj_           1 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMG-----DRLYIGLAGLATDVQTVAQRLKFRLNLYEL   75 (204)
T ss_dssp             CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECS-----TTEEEECCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeeeCCceEEEEEECCEEEEEECCCcccCCeeEcCcccEEEEeC-----CCeEEEeccCchHHHHHHHHHHHhhhhhhh
Confidence            467789999999999999999999999999999999999999999     99999976           88899999999


Q ss_pred             hcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCC-CCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhc
Q psy10322         87 EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE-GKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        87 ~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~-g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      .++.+++++.+|+++++++|.+|++||+|++||||||++ ++|.+|.+||.|.... ..++++|+|+.+++++||+.|  
T Consensus        76 ~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~lvaG~D~~~~~~~~~~~d~~g~~~~~~~~~~~G~g~~~~~~~l~~~~--  153 (204)
T d1iruj_          76 KEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW--  153 (204)
T ss_dssp             HSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC--
T ss_pred             hcccccchHHHHHHHHHHHHHhhhccceeEEEEEEEcCCCCceEEEEecCCCceeeecceEEechhHHHHHHHHHhcc--
Confidence            999999999999999999999989999999999999975 4789999999998655 568999999999999999976  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                    +++||+|||++++++||+.+.+||+.+|++++|+
T Consensus       154 ----------------------------------------------~~~ms~~ea~~l~~~al~~a~~rd~~sg~~~~v~  187 (204)
T d1iruj_         154 ----------------------------------------------EPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVH  187 (204)
T ss_dssp             ----------------------------------------------CSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEEE
T ss_pred             ----------------------------------------------ccCCCHHHHHHHHHHHHHHHHhhcccCCCcEEEE
Confidence                                                          8999999999999999999999999999999999


Q ss_pred             EEEcCCEEEEeeccCCC
Q psy10322        245 AITKDGIKEYNFPLRKD  261 (261)
Q Consensus       245 ~itkdg~~~~~~~~r~~  261 (261)
                      +|+|||++++.+++|+|
T Consensus       188 ii~k~gi~~~~~~~r~D  204 (204)
T d1iruj_         188 IIEKDKITTRTLKARMD  204 (204)
T ss_dssp             EEESSBEEEEEBCCCCC
T ss_pred             EEeCCCEEEEEEecCCC
Confidence            99999999999999998

>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-43  Score=304.86  Aligned_cols=181  Identities=21%  Similarity=0.319  Sum_probs=171.1

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+|+||||||+|+|++.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++
T Consensus         6 v~~GtTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~ki~~i~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~   80 (205)
T d1ryph_           6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVH-----DKIWCCRSGSAADTQAIADIVQYHLELYTSQYG   80 (205)
T ss_dssp             CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccCcceEEEEEECCEEEEEECCccccCceeeccccceEEEcc-----CceEEeeccchhHHHHHHHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999999999999999999     99999876           78889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      ++ ++..+++++++++|++| +||+|++||||||++++|+||++||.|++.+++++|+|+|+.+++++||+.|       
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~-~p~~~~~lvaG~d~~~~p~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~-------  151 (205)
T d1ryph_          81 TP-STETAASVFKELCYENK-DNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF-------  151 (205)
T ss_dssp             SC-CHHHHHHHHHHHHHHTT-TTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC-------
T ss_pred             Cc-cHHHHHHHHHHHHHhCc-cCceEEEEEEeecCCCCcEEEEECCCCcEEecCeEEeecCcHHHHHHHHhhh-------
Confidence            65 58999999999999875 7999999999999888999999999999999999999999999999999986       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                                                               +++||+|||++++++||+.+.+||+.+|++++|++||||
T Consensus       152 -----------------------------------------~~~ms~~ea~~l~~~al~~a~~rD~~sg~~v~v~iitk~  190 (205)
T d1ryph_         152 -----------------------------------------RENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAA  190 (205)
T ss_dssp             -----------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT
T ss_pred             -----------------------------------------hcccCHHHHHHHHHHHHHHHHHhcCcCCCCEEEEEEcCC
Confidence                                                     899999999999999999999999999999999999999


Q ss_pred             CEEEEee
Q psy10322        250 GIKEYNF  256 (261)
Q Consensus       250 g~~~~~~  256 (261)
                      |+++..+
T Consensus       191 G~~~~~~  197 (205)
T d1ryph_         191 GVERLIF  197 (205)
T ss_dssp             EEEEEEE
T ss_pred             ceEEEec
Confidence            9988765

>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.1e-42  Score=292.87  Aligned_cols=180  Identities=24%  Similarity=0.284  Sum_probs=171.6

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+|+||||||+|+|+++|.++.+++.+|||+|+     +|++++++           +++.+++.|+++++.+++
T Consensus         1 TTivai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~   75 (202)
T d1iruh_           1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIH-----DRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL   75 (202)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CeEEEEEECCEEEEEECCccccCCeeecCCcceEEEcC-----CcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            69999999999999999999999999999999999999     99999876           778899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.+| +||++++|+||+|++++|+||++||.|++.+.+++|+|+|+.+++++||+.|           
T Consensus        76 ~~~~a~~l~~~l~~~~-~p~~~~~lvaG~d~~~~~~l~~~d~~g~~~~~~~~a~G~g~~~a~~~L~~~~-----------  143 (202)
T d1iruh_          76 VHTAASLFKEMCYRYR-EDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY-----------  143 (202)
T ss_dssp             HHHHHHHHHHHHHHTT-TTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHhhc-cceeEEEEEEEeecCCCcEEEEECCCCceeecceeEEeCCHHHHHHHHHHhh-----------
Confidence            9999999999999876 7999999999999988899999999999999999999999999999999975           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++|+.|||++++++||..+.+||+.+|++++|++|++||+++
T Consensus       144 -------------------------------------~~~~~~~ea~~l~~~al~~a~~rD~~sg~~i~v~vi~~~G~~~  186 (202)
T d1iruh_         144 -------------------------------------REGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVER  186 (202)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred             -------------------------------------ccCCcHHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEeCCCeEE
Confidence                                                 8999999999999999999999999999999999999999988


Q ss_pred             Eeecc
Q psy10322        254 YNFPL  258 (261)
Q Consensus       254 ~~~~~  258 (261)
                      +.++.
T Consensus       187 ~~~~~  191 (202)
T d1iruh_         187 QVLLG  191 (202)
T ss_dssp             EEECG
T ss_pred             EEcCH
Confidence            76654

>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-41  Score=291.91  Aligned_cols=175  Identities=22%  Similarity=0.294  Sum_probs=167.9

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+|+||||||+|+|.++|.++.+++.+|||+|+     ++++|+++           +++.+++.|++.++.+++
T Consensus         1 TT~igi~~~dgVvlaaD~~~t~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (201)
T d1irul_           1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEIN-----PYLLGTMAGGAADCSFWERLLARQCRIYELRNKERIS   75 (201)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEEcCccccCCEeecCCcccEEEeC-----CcEEEEEcCccchHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            69999999999999999999999999999999999999     99999886           778899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|.+|.+||++++++||+|++ +|+||++||.|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 ~~~~a~~l~~~~~~~~~~p~~~~~lvaG~d~~-~~~l~~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~-----------  143 (201)
T d1irul_          76 VAAASKLLANMVYQYKGMGLSMGTMICGWDKR-GPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY-----------  143 (201)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCCBEEEEEEECSS-SEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC-----------
T ss_pred             hhHHHHHHHHHhhhccCCCceEEEEEEEEecC-CceEEEEccCceEEEeeeEEecCchHHHHHHHHhhc-----------
Confidence            99999999999999999999999999999975 599999999999999999999999999999999976           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.|||++++++||+.+.+||+.+|++++|++|+++|++.
T Consensus       144 -------------------------------------~~~ms~eea~~l~~~~l~~~~~~d~~sg~~~~v~~i~~~G~~~  186 (201)
T d1irul_         144 -------------------------------------SYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIR  186 (201)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred             -------------------------------------cCCCCHHHHHHHHHHHHHHHHHhCCCCCCceEEEEEeCCceEE
Confidence                                                 8999999999999999999999999999999999999999764

>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-41  Score=294.16  Aligned_cols=177  Identities=23%  Similarity=0.256  Sum_probs=170.1

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+||||||||+|+|+++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++.+++
T Consensus         1 TT~iai~~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (212)
T d1rypl_           1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEIN-----PFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS   75 (212)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEEcCccccCceeecCCcceEEEEC-----CcEEEEeccchHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            69999999999999999999999999999999999999     99999876           888899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+++++++++|++++.|++++.+++|+|++++|+||++||.|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 ~~~~a~~ls~~~~~~~~~p~~~~~~l~G~~~~~g~~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~-----------  144 (212)
T d1rypl_          76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY-----------  144 (212)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHhccCCcceEeeeeEeecCCCCEEEEECCCceEEecceEEEccCcccchhHHHHhc-----------
Confidence            999999999999999889999999999999888899999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++|++|||++++++||+.+.+||+.+|++++|++|++||++.
T Consensus       145 -------------------------------------~~~mt~~ea~~l~~~al~~~~~rd~~sg~~v~v~vi~~~g~~~  187 (212)
T d1rypl_         145 -------------------------------------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY  187 (212)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred             -------------------------------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCceEE
Confidence                                                 8999999999999999999999999999999999999999875


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       188 ~  188 (212)
T d1rypl_         188 H  188 (212)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-41  Score=290.99  Aligned_cols=179  Identities=21%  Similarity=0.291  Sum_probs=168.7

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      ++|+|||+|+||||||+|+|++.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+++++.++
T Consensus         1 m~tiigi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~   75 (198)
T d1rypk_           1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLS-----PHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYEL   75 (198)
T ss_dssp             CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CeEEEEEEECCEEEEEEcCCcccCCEeecCccceEEEec-----CCEEEEecCCcccHHHHHHHHHHHHHHHHHHhCCCc
Confidence            479999999999999999999999999999999999999     99999876           78889999999999999


Q ss_pred             CHHHHHHHHHHHHhcc--ccCCcceEEEEEEEcC-CCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         93 STTSLAKMISIMMYGK--RFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~--r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      +++.+++++++++|.+  +.+||++++||||||+ +++|+||++||.|++.+++++|+|+|+.++.++||+.|       
T Consensus        76 ~~~~~~~~i~~~~~~~~~~~~P~~~~~liaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~-------  148 (198)
T d1rypk_          76 SPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY-------  148 (198)
T ss_dssp             CHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC-------
T ss_pred             chHHHHHHHHHHHHHHHhcccccceEEEEEEEecCCCceEEEEecccccEEecceEEEeccchhhHHHHHhcc-------
Confidence            9999999999999874  4689999999999997 56899999999999999999999999999999999976       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD  249 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd  249 (261)
                                                               +++||.|||++++++||+.+.+||+.++++++|++|++|
T Consensus       149 -----------------------------------------~~~~~~eea~~l~~~~l~~~~~~d~~s~~~~~v~vi~~d  187 (198)
T d1rypk_         149 -----------------------------------------RPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKD  187 (198)
T ss_dssp             -----------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETT
T ss_pred             -----------------------------------------cccCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCC
Confidence                                                     899999999999999999999999999999999999999


Q ss_pred             CEEEEe
Q psy10322        250 GIKEYN  255 (261)
Q Consensus       250 g~~~~~  255 (261)
                      |+++..
T Consensus       188 G~~~~~  193 (198)
T d1rypk_         188 GIRQVD  193 (198)
T ss_dssp             EEEEEC
T ss_pred             CeEEcc
Confidence            997643

>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-40  Score=289.47  Aligned_cols=175  Identities=19%  Similarity=0.278  Sum_probs=166.0

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+|+||||||+|+|.++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++++|..++
T Consensus         1 TTivgi~~~dgVvlaaD~r~s~g~~i~~~~~~KI~~i~-----~~i~~~~aG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (220)
T d1irui_           1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFIS-----PNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPR   75 (220)
T ss_dssp             CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred             CeEEEEEECCEEEEEEcCCcccCCEeecCCcccEEEec-----CcEEEEEccccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            69999999999999999999999999999999999999     99999876           688889999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+++++++++|++| +|+++++|+||+|.+ +|+||++||.|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 ~~~~a~~l~~~~y~~~-~p~~~~~ivaG~D~~-g~~L~~id~~G~~~~~~~~a~Gsgs~~a~~~L~~~~-----------  142 (220)
T d1irui_          76 VVTANRMLKQMLFRYR-GYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF-----------  142 (220)
T ss_dssp             HHHHHHHHHHHHHHTT-TCSCEEEEEEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC-----------
T ss_pred             HHHHHHHHHhhhhhcc-cccceeEEEEEEeCC-CcEEEEEeCCCcEEEeeEEEEccccHHHHHHHHHhc-----------
Confidence            9999999999999765 799999999999975 499999999999999999999999999999999976           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||.+||++++++||..+.+||+.+|++++|++||+||++.
T Consensus       143 -------------------------------------~~~~s~~ea~~l~~~al~~~~~~D~~sg~~i~i~vitkdg~~~  185 (220)
T d1irui_         143 -------------------------------------RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDF  185 (220)
T ss_dssp             -------------------------------------CTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEEC
T ss_pred             -------------------------------------ccCCCHHHHHHHHHHHHHHhhccCCCCCCcEEEEEEECCCeEE
Confidence                                                 8999999999999999999999999999999999999999864


Q ss_pred             E
Q psy10322        254 Y  254 (261)
Q Consensus       254 ~  254 (261)
                      .
T Consensus       186 ~  186 (220)
T d1irui_         186 L  186 (220)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-40  Score=291.91  Aligned_cols=188  Identities=18%  Similarity=0.216  Sum_probs=169.4

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      .+|+. +|+|+|||+|+||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus         2 ~~~i~-tGtTivgi~~~dgVvlaaD~r~s~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~   75 (233)
T d1ryp2_           2 QQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG-----DNTVVGISGDISDMQHIERLLKDLVTENA   75 (233)
T ss_dssp             CCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEET-----TTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcc-ccceEEEEEECCEEEEEECCCcccCCeeecCCcceEEEeC-----CCEEEEeccCchHHHHHHHHHHHHHHHHH
Confidence            46875 7999999999999999999999999999999999999999     99999876           6777888887


Q ss_pred             hhc-----CCcCCHHHHHHHHHHHHhcc--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHH
Q psy10322         86 HEH-----NKVMSTTSLAKMISIMMYGK--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALL  158 (261)
Q Consensus        86 ~~~-----g~~isv~~lA~~Is~~ly~~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~L  158 (261)
                      +++     +..++++.+++++++++|.+  +++||+|++||||+|++|+|+||++||+|++++++++|+|+|+.+++++|
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~l~~~~y~~~~~~~P~~~~~liaG~d~~g~~~ly~~d~~G~~~~~~~~a~G~g~~~a~~~L  155 (233)
T d1ryp2_          76 YDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL  155 (233)
T ss_dssp             TTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHH
T ss_pred             HhhCCCCCCcccCHHHHHHHHHHHHHhhccccCCceeEEEEEEEcCCCCeEEEEEcCCCcEEeeeeEEecCccHHHHHHH
Confidence            766     56899999999999999876  47899999999999999999999999999999999999999999999999


Q ss_pred             HhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCC
Q psy10322        159 DNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTG  238 (261)
Q Consensus       159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g  238 (261)
                      |+.|+...                                           ..++|++|||++++++||+.+.+||+.+|
T Consensus       156 e~~~~~~~-------------------------------------------~~~~ms~eeA~~l~~~al~~~~~rD~~sg  192 (233)
T d1ryp2_         156 RKVVDRES-------------------------------------------DIPKTTVQVAEEAIVNAMRVLYYRDARSS  192 (233)
T ss_dssp             TTTCCSGG-------------------------------------------GGGGCCHHHHHHHHHHHHHHHHHHBTTCC
T ss_pred             HHHHhhcc-------------------------------------------cccccCHHHHHHHHHHHHHHHHHhcccCC
Confidence            99871100                                           13799999999999999999999999999


Q ss_pred             CcEEEEEEEcC-CEEE
Q psy10322        239 DGVHLCAITKD-GIKE  253 (261)
Q Consensus       239 ~~v~i~~itkd-g~~~  253 (261)
                      ++|+|++|+|| |++.
T Consensus       193 ~~i~i~~itkd~g~~~  208 (233)
T d1ryp2_         193 RNFSLAIIDKNTGLTF  208 (233)
T ss_dssp             SEEEEEEEETTTEEEE
T ss_pred             CCEEEEEEECCCCEEE
Confidence            99999999998 4543

>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=5.3e-40  Score=281.70  Aligned_cols=174  Identities=23%  Similarity=0.389  Sum_probs=164.8

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+||||||||+|+|++.|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++.+|+
T Consensus         1 TT~igi~~kdgVvia~D~r~s~~~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (203)
T d1yarh1           1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQID-----TYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMP   75 (203)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEECCEEEEEECCCcccCCEeecCCcccEEEec-----CCeeeecCCCcchHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            69999999999999999999999999999999999999     99999876           778899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      ++.+|+++++++|++|.+||++++|+||+|.  +|+||.+||+|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 ~~~~a~~l~~~~~~~~~~p~~~~~lvaG~d~--~p~l~~~d~~G~~~~~~~~a~G~g~~~~~~~L~~~~-----------  142 (203)
T d1yarh1          76 IEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY-----------  142 (203)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEESS--SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHhhccCCccceeEEEEEcC--CCeeEecCCccceecccccccCCCcHHHHHHHHHhc-----------
Confidence            9999999999999999999999999999984  499999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEc-CCEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK-DGIK  252 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itk-dg~~  252 (261)
                                                           +++||.|||++++++||+.+.+||+.+|++++|++|++ +|++
T Consensus       143 -------------------------------------~~~~s~eea~~l~~~~l~~~~~~d~~~~~~v~v~ii~~~~g~~  185 (203)
T d1yarh1         143 -------------------------------------SEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYV  185 (203)
T ss_dssp             -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEE
T ss_pred             -------------------------------------cCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCCEE
Confidence                                                 89999999999999999999999999999999999995 5654


Q ss_pred             E
Q psy10322        253 E  253 (261)
Q Consensus       253 ~  253 (261)
                      +
T Consensus       186 ~  186 (203)
T d1yarh1         186 Q  186 (203)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7e-40  Score=279.44  Aligned_cols=176  Identities=25%  Similarity=0.443  Sum_probs=166.2

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+++||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++.+++
T Consensus         1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (202)
T d1j2qh_           1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIA-----DRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPT   75 (202)
T ss_dssp             CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CcEEEEEECCEEEEEECCCcccCCeeccCccceEEEec-----CcEEEEecCcchhHHHHHHHHHHHhhhhhhccCCCcc
Confidence            69999999999999999999999999999999999999     99999876           778899999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhcccccccch
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGIIQHSSKQM  172 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~  172 (261)
                      ++.+|+++++++|.+|.+||++++|+||+|++ +|+||.+||.|++.+ .+++|+|+|+.+++++||+.|          
T Consensus        76 ~~~~a~~~~~~~~~~~~~p~~~~~lvaG~d~~-~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~----------  144 (202)
T d1j2qh_          76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF----------  144 (202)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCEEEEEEEEETT-EEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHhhhcccceeeEEEEEEEcCC-CceEEEEeCCCCeEeecceEEccCChHHHHHHHHhhc----------
Confidence            99999999999999999999999999999975 499999999999765 569999999999999999986          


Q ss_pred             hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEE
Q psy10322        173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK  252 (261)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~  252 (261)
                                                            +++||.|||++++++||+.+.+||+.+|++++|++|+++|++
T Consensus       145 --------------------------------------~~~ms~~ea~~l~~~al~~~~~~d~~~g~~v~v~~i~~~g~~  186 (202)
T d1j2qh_         145 --------------------------------------TPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFY  186 (202)
T ss_dssp             --------------------------------------CTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEE
T ss_pred             --------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCCEE
Confidence                                                  899999999999999999999999999999999999999986


Q ss_pred             EE
Q psy10322        253 EY  254 (261)
Q Consensus       253 ~~  254 (261)
                      +.
T Consensus       187 ~~  188 (202)
T d1j2qh_         187 QY  188 (202)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.1e-40  Score=285.33  Aligned_cols=186  Identities=18%  Similarity=0.180  Sum_probs=169.5

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      .+|+. +|+|+|||+|+||||||+|+|++.|.++.+++.+|||+|+     +|++++.+           +++.++..|.
T Consensus         2 ~~~~~-~GtTivgi~~~dgVviaaD~r~t~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~   75 (217)
T d1iru2_           2 QNPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN-----NSTMLGASGDYADFQYLKQVLGQMVIDEE   75 (217)
T ss_dssp             CSCCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEET-----TTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcC-cccEEEEEEECCEEEEEEcCCcccCCeeecCCcceEEEeC-----CCeEEEeccccHHHHHHHHHHHHHHHHhh
Confidence            46775 7999999999999999999999999999999999999999     99999876           4556666665


Q ss_pred             h-hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhh
Q psy10322         86 H-EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQV  162 (261)
Q Consensus        86 ~-~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~  162 (261)
                      + .++.+++++.+++++++++|.++  .+||++++|+||+|. ++|+||.+||+|++.++++.|+|+|+.+++++||+.|
T Consensus        76 ~~~~~~~~~v~~~a~~l~~~~y~~~~~~~p~~~~~li~G~d~-~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~  154 (217)
T d1iru2_          76 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVL  154 (217)
T ss_dssp             HHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHH
T ss_pred             hhcCCCCCCHHHHHHHHHHHHHHhccccCcccceEEEEEEcC-CCcEEEEEecCceeEeeeEEeccCcHHHHHHHHHHHh
Confidence            4 55789999999999999999876  689999999999994 6799999999999999999999999999999999987


Q ss_pred             hcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEE
Q psy10322        163 GIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVH  242 (261)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~  242 (261)
                                                                    .|+++||.|||++++++||+.+.+||+.+|++++
T Consensus       155 ----------------------------------------------~~~~~lt~~ea~~l~~~al~~a~~rd~~sg~~i~  188 (217)
T d1iru2_         155 ----------------------------------------------EKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQ  188 (217)
T ss_dssp             ----------------------------------------------TSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEE
T ss_pred             ----------------------------------------------cccCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence                                                          2478999999999999999999999999999999


Q ss_pred             EEEEEcCCEEEEe
Q psy10322        243 LCAITKDGIKEYN  255 (261)
Q Consensus       243 i~~itkdg~~~~~  255 (261)
                      |++|++||++.+.
T Consensus       189 i~vi~~~G~~~~~  201 (217)
T d1iru2_         189 TATVTEKGVEIEG  201 (217)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEeCCCEEEcC
Confidence            9999999998654

>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.7e-40  Score=291.07  Aligned_cols=178  Identities=15%  Similarity=0.160  Sum_probs=168.0

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+|+||||||+|++.+++.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        27 v~~G~tvvgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~  101 (250)
T d1iruc_          27 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLN-----EDMACSVAGITSDANVLTNELRLIAQRYLLQYQ  101 (250)
T ss_dssp             HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcEEEEEeCCEEEEEEeCccccCCcccCcccceEEECC-----CcEEEEeecccchHHHHHHHHHHHHHHHHHHcC
Confidence            478999999999999999999999999988889999999999     99999886           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .+++++.+|+.++++++.++    +|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||++|   
T Consensus       102 ~~i~~~~la~~l~~~~~~~~~~~~~rP~~~~~li~G~D~~~gp~Ly~~Dp~G~~~~~~~~a~G~gs~~a~~~Le~~y---  178 (250)
T d1iruc_         102 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY---  178 (250)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHC---
T ss_pred             CCcchHHHHHHHHHHHHHHhhhccCCcceEEEEEEEEcCCCCCEEEEEcccccEeeeeEEEeCcChHHHHHHHHhhc---
Confidence            99999999999999987653    57999999999999888899999999999999999999999999999999987   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                   + ++||+|||++++++||+.+.+||..++++++|+
T Consensus       179 ---------------------------------------------~~~~ms~eeai~la~~al~~~~~~d~~~~~~iei~  213 (250)
T d1iruc_         179 ---------------------------------------------KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA  213 (250)
T ss_dssp             ---------------------------------------------CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEE
T ss_pred             ---------------------------------------------ccCCCCHHHHHHHHHHHHHHHhcccCCCCCeEEEE
Confidence                                                         4 589999999999999999999999999999999


Q ss_pred             EEEcCCE
Q psy10322        245 AITKDGI  251 (261)
Q Consensus       245 ~itkdg~  251 (261)
                      +|+++|.
T Consensus       214 ii~~~~~  220 (250)
T d1iruc_         214 TLTRENG  220 (250)
T ss_dssp             EEECCSS
T ss_pred             EEEcCCC
Confidence            9999984

>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.1e-40  Score=288.58  Aligned_cols=178  Identities=19%  Similarity=0.249  Sum_probs=168.4

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+     +|++++++           +++.+++.|++.++
T Consensus        28 i~~G~T~vgi~~~dgVvlaad~r~s~~~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  102 (244)
T d1rypc_          28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN-----DKIAVAVAGLTADAEILINTARIHAQNYLKTYN  102 (244)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCCEEEEEeCCEEEEEEeCCccCCCcccCCccceEEEcC-----CCeEEEEecccCcHHHHHHHHHHHHHHHHHHhC
Confidence            378999999999999999999999999999999999999999     99999876           77889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .+++++.+++.++++++.+    +++||+|++||||+|++++|+||++||.|++.+++++|+|+|+.+++++||+.|   
T Consensus       103 ~~~~~~~~~~~l~~~~~~~~~~~~~rP~~~~~ll~G~d~~~gp~Ly~id~~Gs~~~~~~~a~G~g~~~a~~~Le~~~---  179 (244)
T d1rypc_         103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY---  179 (244)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred             CCCCHHHHHHHHHHHHhhhhhccccCccceeEEEEEEecCCCceEEEecCCCcEeeeeeeeccchhHHHHHHHHhcc---
Confidence            9999999999999998643    378999999999999888899999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++|++|||++++++||..+.+||..++++++|++
T Consensus       180 ---------------------------------------------~~~ms~eeai~l~~~al~~a~~~d~~~~~~iei~i  214 (244)
T d1rypc_         180 ---------------------------------------------KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFAT  214 (244)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEE
T ss_pred             ---------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             EEcCCE
Q psy10322        246 ITKDGI  251 (261)
Q Consensus       246 itkdg~  251 (261)
                      |+++|.
T Consensus       215 i~~~~~  220 (244)
T d1rypc_         215 IRKGAN  220 (244)
T ss_dssp             EECCSS
T ss_pred             EECCCc
Confidence            999985

>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-39  Score=268.43  Aligned_cols=185  Identities=21%  Similarity=0.316  Sum_probs=172.2

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      ++|+|||+++||||||+|+|++.|.++.+++.+|||+|+     ++++++++           +++.+++.|.+.++.++
T Consensus         1 Mt~ivgi~~kdgVviaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~~G~~aD~~~l~~~~~~~~~~~~~~~~~~~   75 (199)
T d1iruk_           1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMS-----EKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYEL   75 (199)
T ss_dssp             CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECS-----SSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CeEEEEEEECCEEEEEECCCccCCCeeecCCcceEEEec-----CcEEEEecccchHHHHHHHHHHHHhhhhhhhcCCcC
Confidence            479999999999999999999999999899999999999     99999875           78889999999999999


Q ss_pred             CHHHHHHHHHHHHhcc--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322         93 STTSLAKMISIMMYGK--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK  170 (261)
Q Consensus        93 sv~~lA~~Is~~ly~~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~  170 (261)
                      +++.+++++++++|.+  +.+|++++++++|+|.+++|+||.+||.|.+.+.++.|+|+|+.+++++|++.|        
T Consensus        76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~aG~d~~~~~~l~~~~~~g~~~~~~~~a~G~gs~~a~~~l~~~~--------  147 (199)
T d1iruk_          76 SPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--------  147 (199)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--------
T ss_pred             cHHHHHHHHHHHHHHHhhccCCcceeeeecceeccCCceEEeecccceEEeeeeeeecccchhhhHHHHHhc--------
Confidence            9999999999988764  367999999999999988899999999999999999999999999999999986        


Q ss_pred             chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322        171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG  250 (261)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg  250 (261)
                                                              +++|++|||++++++||..+.+||+.+|++++|++|+++|
T Consensus       148 ----------------------------------------~~~~~~~ea~~l~~~al~~~~~~d~~sg~~~~v~vv~~~g  187 (199)
T d1iruk_         148 ----------------------------------------TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNG  187 (199)
T ss_dssp             ----------------------------------------CTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTE
T ss_pred             ----------------------------------------cCCCCHHHHHHHHHHHHHHHHHhcCCcCCceEEEEEcCCC
Confidence                                                    8999999999999999999999999999999999999999


Q ss_pred             EEE-EeeccCCC
Q psy10322        251 IKE-YNFPLRKD  261 (261)
Q Consensus       251 ~~~-~~~~~r~~  261 (261)
                      +++ ..+.+++|
T Consensus       188 ~~~~~~~~~~~~  199 (199)
T d1iruk_         188 IHDLDNISFPKQ  199 (199)
T ss_dssp             EECCCCBCCCCC
T ss_pred             eEEcCCccCCCC
Confidence            976 44666654

>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=278.34  Aligned_cols=174  Identities=21%  Similarity=0.224  Sum_probs=163.5

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+|+||||||+|+|.+.|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++.+++
T Consensus         1 TTiVgik~~dGVviaaD~r~s~g~~~~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~l~~~~~~~~~~~~~~~~   75 (222)
T d1rypi_           1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS-----PKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR   75 (222)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CeEEEEEECCEEEEEECCCcccCceeecCCcccEEEEc-----CCEEEEecccchHHHHHHHHHHHHHHHhhhhhCCCCc
Confidence            69999999999999999999999999999999999999     99999876           778889999999999999


Q ss_pred             HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322         94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK  173 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~  173 (261)
                      +..+++++++.+|+++ +||++++|+||+|+ ++|+||.+||.|++.+++++|+|+|+.+++++||+.|           
T Consensus        76 v~~~a~~l~~~~~~~~-~p~~~~~l~aG~d~-~g~~Ly~id~~G~~~~~~~~a~Gsg~~~a~~~Le~~~-----------  142 (222)
T d1rypi_          76 VVSALQMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW-----------  142 (222)
T ss_dssp             HHHHHHHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHhhh-hccceeEEEEEEcC-CCcEEEEEecCcceEEeeEEEECCCcHHHHHHHHhhc-----------
Confidence            9999999999998764 79999999999996 5699999999999999999999999999999999986           


Q ss_pred             hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322        174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE  253 (261)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~  253 (261)
                                                           +++||+|||++++++||..+.+||+.+|++++|++|++++..+
T Consensus       143 -------------------------------------k~~ms~eea~~l~~~al~~a~~~D~~sg~~i~i~vi~~~~~~~  185 (222)
T d1rypi_         143 -------------------------------------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAE  185 (222)
T ss_dssp             -------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEE
T ss_pred             -------------------------------------cCCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEcCCCeE
Confidence                                                 8999999999999999999999999999999999999875433

>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5e-39  Score=283.65  Aligned_cols=193  Identities=16%  Similarity=0.122  Sum_probs=169.5

Q ss_pred             cccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH
Q psy10322         14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ   82 (261)
Q Consensus        14 ~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~   82 (261)
                      .+.++++.+.|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+     +|++|+++           +++.+++
T Consensus        20 EYA~~av~~~g~T~igik~~dgVvlaad~r~~~~-l~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~   93 (243)
T d1rypa_          20 EYAFKATNQTNINSLAVRGKDCTVVISQKKVPDK-LLDPTTVSYIFCIS-----RTIGMVVNGPIPDARNAALRAKAEAA   93 (243)
T ss_dssp             HHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCT-TBCGGGCCSEEECS-----SSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCceEEEEEcCCEEEEEEecccccc-ccccCcccceEecC-----CCEEEEEecCcHHHHHHHHHHHHHHH
Confidence            3455665555779999999999999999998875 57778899999999     99999886           8889999


Q ss_pred             hhhhhcCCcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHH
Q psy10322         83 MYLHEHNKVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALL  158 (261)
Q Consensus        83 ~y~~~~g~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~L  158 (261)
                      .|++.++.+++++.+|++++++++.+    ..|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++|
T Consensus        94 ~~~~~~~~~~~~~~~a~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~L  173 (243)
T d1rypa_          94 EFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNL  173 (243)
T ss_dssp             HHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHhhcccccCccceEEEEEEccCCCCeEEEEcCCEEEEecceEEeCccHHHHHHHH
Confidence            99999999999999999999988643    26899999999999988889999999999999999999999999999999


Q ss_pred             HhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCC
Q psy10322        159 DNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTG  238 (261)
Q Consensus       159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g  238 (261)
                      |++|+....                                         .+..++|.+||++++++||..+.+||. ++
T Consensus       174 e~~~~~~~~-----------------------------------------~~~~~~s~eeav~la~~~l~~~~~~d~-~~  211 (243)
T d1rypa_         174 ENHFKKSKI-----------------------------------------DHINEESWEKVVEFAITHMIDALGTEF-SK  211 (243)
T ss_dssp             HHHHHHHCS-----------------------------------------SSCCCSSHHHHHHHHHHHHHHHHTCCC-CT
T ss_pred             HHHhhcccc-----------------------------------------cccccccHHHHHHHHHHHHHHHhhccC-CC
Confidence            999822110                                         124689999999999999999999996 68


Q ss_pred             CcEEEEEEEcCCEEEE
Q psy10322        239 DGVHLCAITKDGIKEY  254 (261)
Q Consensus       239 ~~v~i~~itkdg~~~~  254 (261)
                      ++++|+++++||++..
T Consensus       212 ~~iei~iitk~g~~~l  227 (243)
T d1rypa_         212 NDLEVGVATKDKFFTL  227 (243)
T ss_dssp             TSEEEEEEETTEEEEC
T ss_pred             CcEEEEEEeCCceEEe
Confidence            8999999999998653

>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-38  Score=280.04  Aligned_cols=180  Identities=19%  Similarity=0.208  Sum_probs=162.3

Q ss_pred             CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322         24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM   92 (261)
Q Consensus        24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i   92 (261)
                      |+|+|||+++||||||+|+|.+.+. +..++.+|||+|+     +|++|+++           +++.+++.|++.+++++
T Consensus        35 g~t~igIk~~dgVVlaad~r~~~~~-~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~  108 (244)
T d1irua_          35 GLTSVAVRGKDCAVIVTQKKVPDKL-LDSSTVTHLFKIT-----ENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEI  108 (244)
T ss_dssp             CCEEEEEECSSEEEEEEECCCCCSS-BCGGGCCSEEESS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             CccEEEEEcCCEEEEEEeccccccc-ccCCccceEEEec-----CCcEEEEecchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4589999999999999999998654 4567899999999     99999886           78999999999999999


Q ss_pred             CHHHHHHHHHHHHhc----cccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccc
Q psy10322         93 STTSLAKMISIMMYG----KRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHS  168 (261)
Q Consensus        93 sv~~lA~~Is~~ly~----~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~  168 (261)
                      +++.+|++++++++.    .++|||+|++||||||++++|+||++||+|++.+++++|+|+|+..++++||++|      
T Consensus       109 ~v~~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~~g~~Ly~~Dp~G~~~~~~~~a~G~gs~~~~~~Le~~~------  182 (244)
T d1irua_         109 PVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV------  182 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHT------
T ss_pred             CchHHHHHHHHHHHHHhcccccCccceeeEEEEEcCCCCcEEEEEcCCccEEecceEeccCchhHHHHHHHhcc------
Confidence            999999999998864    3579999999999999888899999999999999999999999999999999987      


Q ss_pred             ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEc
Q psy10322        169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK  248 (261)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itk  248 (261)
                                                              .++++|+.|||++++++||..+.++|.. +++++|++|++
T Consensus       183 ----------------------------------------~~~~d~t~eeai~l~~~~l~~~~~~d~~-~~~iev~ii~~  221 (244)
T d1irua_         183 ----------------------------------------KKKFDWTFEQTVETAITCLSTVLSIDFK-PSEIEVGVVTV  221 (244)
T ss_dssp             ----------------------------------------TSCCCCCHHHHHHHHHHHHHHHTTCCCC-TTSEEEEEEET
T ss_pred             ----------------------------------------ccccCCCHHHHHHHHHHHHHHHHhcCCC-CCcEEEEEEEe
Confidence                                                    1257899999999999999999999965 57899999999


Q ss_pred             CCEEEEee
Q psy10322        249 DGIKEYNF  256 (261)
Q Consensus       249 dg~~~~~~  256 (261)
                      |+...+.+
T Consensus       222 ~~~~~~~l  229 (244)
T d1irua_         222 ENPKFRIL  229 (244)
T ss_dssp             TEEEEEEC
T ss_pred             CCCcEEEC
Confidence            98765543

>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-38  Score=277.35  Aligned_cols=178  Identities=19%  Similarity=0.188  Sum_probs=162.5

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.| ++..++.+|||+|+     ++++|+++           +++.+++.|++.++
T Consensus        23 ~~~G~t~Vgi~~~dgVvla~d~r~~~~-~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   96 (242)
T d1rype_          23 IKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEID-----RHIGCAMSGLTADARSMIEHARTAAVTHNLYYD   96 (242)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEE-----TTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCCEEEEEeCCEEEEEEeCCccCc-CcccCccceEEEcC-----CCEEEEEeecchhHHHHHHHHHHHHHHHHHHcC
Confidence            367999999999999999999999988 56678899999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----------ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHH
Q psy10322         90 KVMSTTSLAKMISIMMYGK----------RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLD  159 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----------r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le  159 (261)
                      ++++++.++++++++++.+          ++|||+|++||||+|++++|+||++||.|++.+++++|+|+|+.+++++||
T Consensus        97 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~rP~~~~~ii~G~D~~~~p~L~~idp~G~~~~~~~~a~G~gs~~~~~~Le  176 (242)
T d1rype_          97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELL  176 (242)
T ss_dssp             SCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhccccccchhccccceEEEEEEEeccccceEEEEEcCCCceeccceeecccchHHHHHHHH
Confidence            9999999999999987642          258999999999999888999999999999999999999999999999999


Q ss_pred             hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322        160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD  239 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~  239 (261)
                      +.|                                                +++||.+||++++++||.++.++|.. ++
T Consensus       177 ~~~------------------------------------------------~~~ms~~ea~~la~~~l~~~~~~~~~-~~  207 (242)
T d1rype_         177 NEW------------------------------------------------HSSLTLKEAELLVLKILKQVMEEKLD-EN  207 (242)
T ss_dssp             HHC------------------------------------------------CTTCCHHHHHHHHHHHHHHHCSSCCC-TT
T ss_pred             Hhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccCC-CC
Confidence            976                                                89999999999999999999999975 45


Q ss_pred             cEEEEEEEc-CCEEE
Q psy10322        240 GVHLCAITK-DGIKE  253 (261)
Q Consensus       240 ~v~i~~itk-dg~~~  253 (261)
                      +++|++|++ +|++.
T Consensus       208 ~~~v~~i~~~~g~~~  222 (242)
T d1rype_         208 NAQLSCITKQDGFKI  222 (242)
T ss_dssp             SEEEEEEETTTEEEE
T ss_pred             ceEEEEEECCCCeEE
Confidence            799999986 57653

>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.6e-38  Score=279.49  Aligned_cols=175  Identities=11%  Similarity=0.080  Sum_probs=162.9

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+.+.+ ..++.+|||+|+     +|++|+++           +++.+++.|++.+|
T Consensus        30 v~~G~t~VGik~~dgVvlaad~~~~~~~~-~~~~~~Ki~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~g  103 (245)
T d1irug_          30 VENSSTAIGIRCKDGVVFGVEKLVLSKLY-EEGSNKRLFNVD-----RHVGMAVAGLLADARSLADIAREEASNFRSNFG  103 (245)
T ss_dssp             HHTSCCEEEEECSSBEEEEEEEECSCTTB-CTTTTCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCcEEEEEeCCEEEEEEecccccccc-ccCccceEEEcC-----CCEEEEeccCchhHHHHHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999988754 578889999999     99999886           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++|+++.+|++++++++.+    ++|||+|++||||||++++|+||++||+|++.+++++|+|+|+..++++||+.|   
T Consensus       104 ~~i~~~~la~~la~~~~~~t~~~~~rP~~vs~li~G~D~~~gp~Ly~iDp~G~~~~~~~~a~G~gs~~a~~~Le~~~---  180 (245)
T d1irug_         104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ---  180 (245)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSC---
T ss_pred             CCCCHHHHHHHHHHHHHHhhccccccccceEEEEEEEcCCCCceEEEEcCCceEEeeeEEEECCccHHHHHHHHhhc---
Confidence            9999999999999987553    368999999999999888899999999999999999999999999999999976   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||.|||++++++||..+.+++...+.+|+|++
T Consensus       181 ---------------------------------------------~~dmt~eea~~l~~~~l~~~~~~~~~~~~~iei~~  215 (245)
T d1irug_         181 ---------------------------------------------MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSW  215 (245)
T ss_dssp             ---------------------------------------------GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEE
T ss_pred             ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEE
Confidence                                                         78999999999999999999998888888999999


Q ss_pred             EEcC
Q psy10322        246 ITKD  249 (261)
Q Consensus       246 itkd  249 (261)
                      |+++
T Consensus       216 v~~~  219 (245)
T d1irug_         216 VGEL  219 (245)
T ss_dssp             CBTT
T ss_pred             EEec
Confidence            9875

>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit (non-catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=100.00  E-value=1.1e-37  Score=271.09  Aligned_cols=176  Identities=18%  Similarity=0.189  Sum_probs=160.3

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+. .++..++.+|||+|+     +|++++++           +++.+++.|++.++
T Consensus        19 v~~G~t~vgi~~~dgVvlaad~r~~~-~~~~~~~~~Ki~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   92 (221)
T d1yara1          19 VKKGSTALGMKFANGVLLISDKKVRS-RLIEQNSIEKIQLID-----DYVAAVTSGLVADARVLVDFARISAQQEKVTYG   92 (221)
T ss_dssp             HTTSCCEEEEEETTEEEEEECCCCCC-TTBCSTTCCSEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcEEEEEeCCEEEEEEecccCC-cccccCccceEEEec-----CCceEEeeeccchHHHHHHHHHHHHHHHHHHcC
Confidence            36899999999999999999999874 456788899999999     99999876           78899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++.+++.++++++.+    ++|||+|++||||||++ +|+||++||.|++.+++++|+|+|+..++++||+.|   
T Consensus        93 ~~~~~~~l~~~~a~~~~~~~~~~~~rP~~~~~li~G~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~---  168 (221)
T d1yara1          93 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQI-GPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY---  168 (221)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSS-CEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred             CcchHHHHHHHHHHHHHHHhhhccCCCcceEEEEEEEecC-CCeEEEEcCCccEEEeeEEEECCchHHHHHHHHHHh---
Confidence            9999999999999998653    36899999999999965 599999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||+|||++++++||+++.++|. ++++++|++
T Consensus       169 ---------------------------------------------~~~ms~~ea~~la~~~l~~~~~~~~-~~~~~ei~~  202 (221)
T d1yara1         169 ---------------------------------------------KENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIAS  202 (221)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEE
T ss_pred             ---------------------------------------------hccccHHHHHHHHHHHHHHHHhccC-CCCCcEEEE
Confidence                                                         8999999999999999999999875 677999999


Q ss_pred             EEcC-CEE
Q psy10322        246 ITKD-GIK  252 (261)
Q Consensus       246 itkd-g~~  252 (261)
                      |+++ |++
T Consensus       203 i~~~~~~r  210 (221)
T d1yara1         203 ITVGNKYR  210 (221)
T ss_dssp             EETTSCCE
T ss_pred             EEcCCCEE
Confidence            9975 444

>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.3e-38  Score=276.85  Aligned_cols=176  Identities=19%  Similarity=0.220  Sum_probs=160.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH-hhhhhc
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ-MYLHEH   88 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~-~y~~~~   88 (261)
                      +++|+|+|||+++||||||+|+|.+++. +..++.+|||+|+     +|++|+++           +++.+++ .|++.+
T Consensus        28 v~~G~tvvgi~~~dgVvlaad~r~~~~~-~~~~~~~ki~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~y~~~~  101 (250)
T d1rypb_          28 VKQGVTSLGIKATNGVVIATEKKSSSPL-AMSETLSKVSLLT-----PDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIY  101 (250)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCSS-BCGGGCCSSEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHcCCCEEEEEeCCEEEEEEecccCCcc-ccccccceeEecc-----CCEEEEeeecccHHHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999998875 4578899999999     99999876           5566665 488899


Q ss_pred             CCcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         89 NKVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        89 g~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      +.+++++.+|+.++++++.  +  +.+||+|++||||||++++|+||++||.|++.+++++|+|+|+.+++++||+.|  
T Consensus       102 ~~~~~~~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~a~~~Le~~~--  179 (250)
T d1rypb_         102 GEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW--  179 (250)
T ss_dssp             SSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhhcCCcCeeEEEEEEEecCCCCCEEEEEcCcEEEEEeeEEecCcchHHHHHHHHHhc--
Confidence            9999999999999998843  2  368999999999999877899999999999999999999999999999999986  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                                    +++|+.|||++++++||.++.++|. ++++++|+
T Consensus       180 ----------------------------------------------~~~ms~eea~~la~~al~~~~~~d~-s~~~iev~  212 (250)
T d1rypb_         180 ----------------------------------------------NDELELEDAIHIALLTLKESVEGEF-NGDTIELA  212 (250)
T ss_dssp             ----------------------------------------------CTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEE
T ss_pred             ----------------------------------------------ccCCCHHHHHHHHHHHHHHHhhccC-CCCCEEEE
Confidence                                                          8999999999999999999999995 68999999


Q ss_pred             EEEcCCE
Q psy10322        245 AITKDGI  251 (261)
Q Consensus       245 ~itkdg~  251 (261)
                      +|++++.
T Consensus       213 vi~~~~~  219 (250)
T d1rypb_         213 IIGDENP  219 (250)
T ss_dssp             EECSCCG
T ss_pred             EEeCCCc
Confidence            9999875

>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-37  Score=271.89  Aligned_cols=176  Identities=15%  Similarity=0.206  Sum_probs=160.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|++.+.+. +..++.+|||+|+     +|++|+++           +++.++..|++.++
T Consensus        24 v~~G~t~vgik~~dgVvlaad~~~~~~~-~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   97 (234)
T d1irue_          24 IKLGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEID-----AHIGCAMSGLIADAKTLIDKARVETQNHWFTYN   97 (234)
T ss_dssp             HTTSCCEEEEEETTEEEEEEECCCCCTT-BCTTSCCSEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCCEEEEEeCCEEEEEEecCccCCC-cccCcccCEEEcc-----CcEEEEEeeccchHHHHHHHHHHHHHHHHHhhC
Confidence            4689999999999999999999998885 4568889999999     99999886           78889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc---------ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322         90 KVMSTTSLAKMISIMMYGK---------RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN  160 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~---------r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~  160 (261)
                      ++++++.+|+++++++|.+         +.+||+|++|+||||++ +|+||++||.|++.+++++|+|+|+.+++++||+
T Consensus        98 ~~i~~~~la~~i~~~~~~~t~~~~~~~~~~rP~~~~~il~G~D~~-gp~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~  176 (234)
T d1irue_          98 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE  176 (234)
T ss_dssp             SCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhhcccccccccccceEEEEEEEEcCC-CCEEEEEecCcccceeeeEEeCCchHHHHHHHHH
Confidence            9999999999999998642         36899999999999965 5999999999999999999999999999999999


Q ss_pred             hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322        161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG  240 (261)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~  240 (261)
                      .|                                                +++|++|||++++++||+.+.++|. ++.+
T Consensus       177 ~~------------------------------------------------~~~~~~eeai~~a~~al~~~~~~~~-~~~~  207 (234)
T d1irue_         177 LY------------------------------------------------HKSMTLKEAIKSSLIILKQVMEEKL-NATN  207 (234)
T ss_dssp             HC------------------------------------------------CTTCCHHHHHHHHHHHHHHHCSSCC-CTTS
T ss_pred             hh------------------------------------------------ccCCCHHHHHHHHHHHHHHHHhccC-CCCC
Confidence            86                                                8999999999999999999999885 5678


Q ss_pred             EEEEEEEcC-CEE
Q psy10322        241 VHLCAITKD-GIK  252 (261)
Q Consensus       241 v~i~~itkd-g~~  252 (261)
                      ++|++|+++ +++
T Consensus       208 iei~ii~~~~~~k  220 (234)
T d1irue_         208 IELATVQPGQNFH  220 (234)
T ss_dssp             EEEEEECSSSCCE
T ss_pred             EEEEEEECCCCEE
Confidence            999999986 443

>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-37  Score=272.99  Aligned_cols=177  Identities=15%  Similarity=0.156  Sum_probs=162.3

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      ++|+|+|||+++||||||+|++.+++.   .++.+|||+|+     +|++|+++           +++.+++.|++.+++
T Consensus        29 ~~g~t~igi~~~dgvvlaad~~~~~~l---~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~  100 (233)
T d1rypf_          29 KQGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCD-----EHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNR  100 (233)
T ss_dssp             HTSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HcCCCEEEEEECCeEEEEEeccccccC---CcchheEEEcC-----CCEEEEEeeccccHHHHHHHHHHHHHhhhhhcCC
Confidence            679999999999999999999998874   36779999999     99999876           888999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322         91 VMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQ  166 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~  166 (261)
                      +|+++.+|+.++++++.+    ..|||+|++||||||++| |+||++||+|++.+++++|+|+|+..++++||+.|.   
T Consensus       101 ~i~~~~la~~l~~~~~~~t~~~~~RP~gv~~il~G~d~~g-~~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~---  176 (233)
T d1rypf_         101 KLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD---  176 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTE-EEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHH---
T ss_pred             CCcHHHHHHHHHHHHHHHhcccccCCccceEEEEEEcCCC-CEEEEEccccceecccEEEecCchHHHHHHHHHHHh---
Confidence            999999999999998643    368999999999999765 999999999999999999999999999999999871   


Q ss_pred             ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                               ..|+++|++|||++++++||..+.+||..++++++|++|
T Consensus       177 -----------------------------------------~~~~~dms~eeai~l~~~~l~~~~~~d~~~~~~iev~ii  215 (233)
T d1rypf_         177 -----------------------------------------TFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIV  215 (233)
T ss_dssp             -----------------------------------------HHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEE
T ss_pred             -----------------------------------------hccccCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEE
Confidence                                                     125899999999999999999999999999999999999


Q ss_pred             EcCCE
Q psy10322        247 TKDGI  251 (261)
Q Consensus       247 tkdg~  251 (261)
                      +||+.
T Consensus       216 ~k~~~  220 (233)
T d1rypf_         216 GKDTP  220 (233)
T ss_dssp             ETTEE
T ss_pred             ECCCC
Confidence            99854

>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.4e-37  Score=267.69  Aligned_cols=177  Identities=16%  Similarity=0.222  Sum_probs=163.3

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK   90 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~   90 (261)
                      ++|+|+|||+|+||||||+|+|.+++.+ ..++.+|||+|+     +|++|+++           +++.+++.|++.+++
T Consensus        29 ~~G~tvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~  102 (233)
T d1irub_          29 AGGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPIT-----KHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQE  102 (233)
T ss_dssp             HTSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HcCCCEEEEEeCCEEEEEEeCCcccCCc-cccccceEEEec-----CceEEEEeccchHHHHHHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999874 578899999999     99999886           788899999999999


Q ss_pred             cCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322         91 VMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQ  166 (261)
Q Consensus        91 ~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~  166 (261)
                      +++++.+++.++++++.+    +.+||++++++||+|+ ++|+||++||.|++.+++++|+|+|+.+++++||+.|    
T Consensus       103 ~~~~~~~~~~l~~~~~~~~~~~~~~p~~~~~li~g~d~-~~~~ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~~----  177 (233)
T d1irub_         103 PIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRY----  177 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC----
T ss_pred             CCCHHHHHHHHHHHHHHHhhccccccceEEEeeeeccc-CCceEEEEcCCcceEeccceecCCcHHHHHHHHHhhc----
Confidence            999999999999998653    3689999999999985 5699999999999999999999999999999999875    


Q ss_pred             ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                                  +++|++|||++++++||..+.+||. ++++|+|++|
T Consensus       178 --------------------------------------------~~~ms~eea~~l~~~~L~~~~~~d~-~~~~vev~ii  212 (233)
T d1irub_         178 --------------------------------------------NEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGIC  212 (233)
T ss_dssp             --------------------------------------------CTTCCHHHHHHHHHHHHHTTCCSCC-CSSSEEEEEE
T ss_pred             --------------------------------------------ccCccHHHHHHHHHHHHHHHHhccC-CCCcEEEEEE
Confidence                                                        8999999999999999999999997 5678999999


Q ss_pred             EcCCEEEE
Q psy10322        247 TKDGIKEY  254 (261)
Q Consensus       247 tkdg~~~~  254 (261)
                      +++|+++.
T Consensus       213 ~~~g~~~l  220 (233)
T d1irub_         213 NEAGFRRL  220 (233)
T ss_dssp             ETTEEEEC
T ss_pred             eCCCeEEC
Confidence            99998754

>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=9.1e-37  Score=269.52  Aligned_cols=173  Identities=15%  Similarity=0.189  Sum_probs=159.2

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+++.+ ..++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        28 v~~G~t~Igik~~dgVvlaad~r~~~~~~-~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~  101 (243)
T d1j2pa_          28 VKRGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKID-----EHICAATSGLVADARVLIDRARIEAQINRLTYD  101 (243)
T ss_dssp             HHTSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHcCCCEEEEEECCEEEEEEecCccccCc-cccccccEeecC-----CcEEEEeeecccHHHHHHHHHHHHHHHHHHhhC
Confidence            36899999999999999999999999875 457889999999     99999876           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .+++++.+++.++++++.+    +.|||+|++|+||+|+  +|+||++||.|++.+++++|+|+|+.+++++||+.|   
T Consensus       102 ~~~~~~~l~~~l~~~~~~~~~~~~~rP~~~~~il~G~D~--~p~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~y---  176 (243)
T d1j2pa_         102 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE--VPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY---  176 (243)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESS--SEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred             CCCcHHHHHHHHHHHHHHHhhhccCCccceeEEEEEecC--CceEEEEeccCceeeeeEEEeCCCcHHHHHHHHhhc---
Confidence            9999999999999999753    2579999999999984  499999999999999999999999999999999986   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA  245 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~  245 (261)
                                                                   +++||+|||++++++||..+.+||.. +++|+|++
T Consensus       177 ---------------------------------------------~~~ms~eeai~la~~~l~~~~~~d~~-~~~iei~i  210 (243)
T d1j2pa_         177 ---------------------------------------------RDDLSFDDAMVLGLVAMGLSIESELV-PENIEVGY  210 (243)
T ss_dssp             ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHTSCCC-GGGEEEEE
T ss_pred             ---------------------------------------------ccCCCHHHHHHHHHHHHHHHHhcccC-CCceEEEE
Confidence                                                         89999999999999999999999975 56899999


Q ss_pred             EEcCC
Q psy10322        246 ITKDG  250 (261)
Q Consensus       246 itkdg  250 (261)
                      +++|+
T Consensus       211 v~~~~  215 (243)
T d1j2pa_         211 VKVDD  215 (243)
T ss_dssp             EETTT
T ss_pred             EEeCC
Confidence            99874

>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=268.12  Aligned_cols=179  Identities=13%  Similarity=0.144  Sum_probs=161.2

Q ss_pred             ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322         17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL   85 (261)
Q Consensus        17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~   85 (261)
                      +++ +++|+|+|||+++||||||+|+|.++|+++ .++.+|||+|+     +|++|+++           +++.+++.|+
T Consensus        24 ~ka-v~~G~t~igik~~dgVvlaad~~~~~~~~~-~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~   96 (244)
T d1rypg_          24 VKA-VENGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVD-----RHIGCVYSGLIPDGRHLVNRGREEAASFK   96 (244)
T ss_dssp             HHH-HHTSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEET-----TTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHcCCCEEEEEeCCEEEEEEecccCCCCcc-ccccceEEEcc-----CceEEEEccchhhHHHHHHHHHHHHHHHH
Confidence            444 357999999999999999999999999765 45678999999     99999876           7888999999


Q ss_pred             hhcCCcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322         86 HEHNKVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ  161 (261)
Q Consensus        86 ~~~g~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~  161 (261)
                      +.++++++++.+++.++++++.++    .|||+|++||||||++ +|+||++||+|++.+++++|+|+|+..++++||+.
T Consensus        97 ~~~~~~~~~~~la~~~~~~~~~~t~~~~~RP~~~~~iiaG~D~~-gp~Ly~idp~Gs~~~~~~~a~G~gs~~~~~~Lek~  175 (244)
T d1rypg_          97 KLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKL  175 (244)
T ss_dssp             HHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHhhcccccCCceEEEEEEEEeCC-CCEEEEEcCCccEEecCeEecCCccHHHHHHHHHH
Confidence            999999999999999999996542    5799999999999975 59999999999999999999999999999999974


Q ss_pred             hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322        162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV  241 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v  241 (261)
                      .                                             +.|+++||+|||++++++||..+.+++..++.++
T Consensus       176 ~---------------------------------------------~~~~~~mt~eeai~la~~~L~~~~~~~~~~~~~i  210 (244)
T d1rypg_         176 V---------------------------------------------DHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFEL  210 (244)
T ss_dssp             H---------------------------------------------HHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEE
T ss_pred             H---------------------------------------------hhCCCCCCHHHHHHHHHHHHHHHHhcccCCCCeE
Confidence            3                                             0158999999999999999999999998889999


Q ss_pred             EEEEEEc
Q psy10322        242 HLCAITK  248 (261)
Q Consensus       242 ~i~~itk  248 (261)
                      +|++|+.
T Consensus       211 ev~ii~~  217 (244)
T d1rypg_         211 EISWCSL  217 (244)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEE
Confidence            9999984

>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome beta subunit (catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=4.7e-36  Score=259.36  Aligned_cols=177  Identities=20%  Similarity=0.230  Sum_probs=162.4

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is   93 (261)
                      ||+|||+|+||||||+|+|+++|.++.+++.+|||+|+     +|++|+++           +++.+++.|++.++.+++
T Consensus         1 TTivgi~~kdgVvlaaD~r~s~g~~i~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~   75 (224)
T d1q5qh_           1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTD-----EYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT   75 (224)
T ss_dssp             CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeecCCcceEEEeC-----CcEEEEecccchHHHHHHHHHHHHhHHHHHhhCCCcc
Confidence            69999999999999999999999999999999999999     99999876           778899999999999999


Q ss_pred             HHHHHHHHHHHHhccc---cCCcceEEEEEEEc-----CCCCeEEEEECCCCceee--cCEEEEecChHHHHHHHHhhhh
Q psy10322         94 TTSLAKMISIMMYGKR---FFPYYTSTIIAGLD-----PEGKGCVYSYDPIGHTER--ANFRAGGSSGALLQALLDNQVG  163 (261)
Q Consensus        94 v~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D-----~~g~p~Ly~iDp~Gs~~~--~~~~a~G~g~~~~~~~Le~~~~  163 (261)
                      ++.+++++++++|.++   .+|+++.++++|+|     .+++|+||++||.|+...  .++.|+|+|+.+++++||+.| 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~l~~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~-  154 (224)
T d1q5qh_          76 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY-  154 (224)
T ss_dssp             HHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhhcccccCccceeeEEEeecccccccCCceEEEEEccCcEEEeccceeeecCccHHHHHHHHHhh-
Confidence            9999999999998764   57899999998877     456899999999999765  478999999999999999976 


Q ss_pred             cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC----
Q psy10322        164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD----  239 (261)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~----  239 (261)
                                                                     +++||+|||++++++||..+.+||..+|+    
T Consensus       155 -----------------------------------------------~~~mt~~ea~~l~~~al~~a~~rD~~SGg~~~~  187 (224)
T d1q5qh_         155 -----------------------------------------------SPDSDEETALRAAIESLYDAADDDSATGGPDLT  187 (224)
T ss_dssp             -----------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTT
T ss_pred             -----------------------------------------------cccCCHHHHHHHHHHHHHHHHhhccccCCcccc
Confidence                                                           89999999999999999999999999986    


Q ss_pred             ---cEEEEEEEcCCEEEE
Q psy10322        240 ---GVHLCAITKDGIKEY  254 (261)
Q Consensus       240 ---~v~i~~itkdg~~~~  254 (261)
                         ++.+++|+|+|++..
T Consensus       188 ~~~~~~~~~i~~~g~~~l  205 (224)
T d1q5qh_         188 RGIYPTAVTITQAGAVHV  205 (224)
T ss_dssp             TTBCCEEEEEETTEEEEC
T ss_pred             cccceEEEEEeCCcEEEc
Confidence               489999999998753

>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.7e-36  Score=263.41  Aligned_cols=178  Identities=15%  Similarity=0.236  Sum_probs=161.6

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+|+||||||+|++.+++.++..++.+|||+|+     +|++|+++           +++.+++.|++.++
T Consensus        25 v~~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   99 (241)
T d1rypd_          25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKID-----SHVVLSFSGLNADSRILIEKARVEAQSHRLTLE   99 (241)
T ss_dssp             HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCCCEEEEEeCCEEEEEEEccccccCcccccccccEEEeC-----CCEEEEeeeccchHHHHHHHHHHHHHHHHHHcC
Confidence            368999999999999999999999999888888999999999     99999876           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcC-CCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI  164 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~  164 (261)
                      ++++++.+|++++++++.+    ++|||+|++|+||||+ +++|+||++||+|++.+++++|+|+|+..++++||+.|  
T Consensus       100 ~~i~~~~la~~i~~~~~~~t~~~~~rP~~v~~li~G~d~~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~--  177 (241)
T d1rypd_         100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY--  177 (241)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccccCcccceEEEEEEccccCcceEEEecCCEEEEeeCeEEECcCHHHHHHHHHHhh--
Confidence            9999999999999998654    3689999999999996 46899999999999999999999999999999999987  


Q ss_pred             ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322        165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~  244 (261)
                                                           ..      ..++|+.+||++++++||..+.++|   +++++|+
T Consensus       178 -------------------------------------~~------~~~~~t~~e~i~lal~al~~~~~~~---~~~iei~  211 (241)
T d1rypd_         178 -------------------------------------DR------KEPPATVEECVKLTVRSLLEVVQTG---AKNIEIT  211 (241)
T ss_dssp             -------------------------------------CT------TSCCCSHHHHHHHHHHHHHHHHCSC---STTEEEE
T ss_pred             -------------------------------------hc------ccCCCCHHHHHHHHHHHHHHHhcCC---CCcEEEE
Confidence                                                 10      0468999999999999999998754   6799999


Q ss_pred             EEEcCCE
Q psy10322        245 AITKDGI  251 (261)
Q Consensus       245 ~itkdg~  251 (261)
                      ++++|+-
T Consensus       212 ii~~d~~  218 (241)
T d1rypd_         212 VVKPDSD  218 (241)
T ss_dssp             EEETTTE
T ss_pred             EEECCCC
Confidence            9999853

>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.6e-36  Score=264.75  Aligned_cols=175  Identities=19%  Similarity=0.246  Sum_probs=155.3

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+     +|++|+++           +++.+++.|++.+|
T Consensus        25 v~~G~Tvvgik~~dgVvla~d~r~~-~~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   98 (243)
T d1irud_          25 VKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALD-----DNVCMAFAGLTADARIVINRARVECQSHRLTVE   98 (243)
T ss_dssp             HHTSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccc-CcccCCCccccEEECC-----CCEEEEEEEchhhHHHHHHHHHHHHHHHHHhcC
Confidence            4689999999999999999999965 6677889999999999     99999886           88899999999999


Q ss_pred             CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      .+|+++.+|++++++++.+    +.|||+|++||||||++|+|+||++||.|++.+++++|+|+|+..++++||++|   
T Consensus        99 ~~i~v~~la~~ls~~~~~~t~~~~~rp~~v~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek~~---  175 (243)
T d1irud_          99 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY---  175 (243)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTC---
T ss_pred             CCccHHHHHHHHHHHHHHHHhcccCCccceEEEEEEEcCCCCCEEEEecCcEEEEeccEEEECCChHHHHHHHHHhc---
Confidence            9999999999999998542    368999999999999888899999999999999999999999999999999976   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPV--PLEKAISVVKDAFTAAAERDIYTGDGVHL  243 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~eea~~l~~~al~~~~~rd~~~g~~v~i  243 (261)
                                                                   +++|  +.++++++++++|....   ..++++|+|
T Consensus       176 ---------------------------------------------~~~~~~~~~~~i~~ai~~l~~~~---~~~~~~vei  207 (243)
T d1irud_         176 ---------------------------------------------TDEAIETDDLTIKLVIKALLEVV---QSGGKNIEL  207 (243)
T ss_dssp             ---------------------------------------------CSSTTCSHHHHHHHHHHHHHTTS---CTTSTTCCE
T ss_pred             ---------------------------------------------ccCCCccHHHHHHHHHHHHHHHh---cCCCCcEEE
Confidence                                                         5666  77778888777776554   456889999


Q ss_pred             EEEEcC-CEE
Q psy10322        244 CAITKD-GIK  252 (261)
Q Consensus       244 ~~itkd-g~~  252 (261)
                      ++|++| |++
T Consensus       208 ~ii~k~~~~~  217 (243)
T d1irud_         208 AVMRRDQSLK  217 (243)
T ss_dssp             EEEESSSCEE
T ss_pred             EEEECCCCEE
Confidence            999987 554

>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-35  Score=261.26  Aligned_cols=173  Identities=14%  Similarity=0.148  Sum_probs=155.6

Q ss_pred             ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322         21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN   89 (261)
Q Consensus        21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g   89 (261)
                      +++|+|+|||+++||||||+|+|.+++..   .+.+|||+|+     +|++|+++           +++.+++.|++.+|
T Consensus        26 v~~G~t~vgik~~dgVvlaad~~~~~~~~---~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~   97 (238)
T d1iruf_          26 VKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVD-----NHIGISIAGLTADARLLCNFMRQECLDSRFVFD   97 (238)
T ss_dssp             HHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCCEEEEEeCCEEEEEEecccccCCC---CccceEEEeC-----CceEEEEeccchHHHHHHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999998864   3568999999     99999886           88889999999999


Q ss_pred             CcCCHHHHHHHHHHHHh--ccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322         90 KVMSTTSLAKMISIMMY--GKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII  165 (261)
Q Consensus        90 ~~isv~~lA~~Is~~ly--~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~  165 (261)
                      ++++++.+++.++++++  .++  .|||+|++||||||++ +|+||++||+|++.+++++|+|+|+..++++||++|   
T Consensus        98 ~~i~~~~l~~~l~~~~~~y~~~~~~rP~~v~~il~G~D~~-gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Lek~~---  173 (238)
T d1iruf_          98 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDM-GPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM---  173 (238)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETT-EEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHH---
T ss_pred             CCcchHHHHHHHHHHHHHHhhccCCCcccceEEEEEEcCC-CceEEEEcCCCCEEeeeeEEECCCchhhHHHHHhhc---
Confidence            99999999999998854  333  5899999999999974 599999999999999999999999999999999987   


Q ss_pred             cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhccc-CCCCcEE
Q psy10322        166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDI-YTGDGVH  242 (261)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~-~~g~~v~  242 (261)
                                                                   ++  +++++||++++++||..++.+|. .++.+|+
T Consensus       174 ---------------------------------------------~~~~~~~~~eav~lai~al~~~~~~~~~~~~~~ie  208 (238)
T d1iruf_         174 ---------------------------------------------SEFMECNLNELVKHGLRALRETLPAEQDLTTKNVS  208 (238)
T ss_dssp             ---------------------------------------------HHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEE
T ss_pred             ---------------------------------------------ccccCCCHHHHHHHHHHHHHHHHhhcccCCCCcEE
Confidence                                                         33  56999999999999999987654 5889999


Q ss_pred             EEEEEcCC
Q psy10322        243 LCAITKDG  250 (261)
Q Consensus       243 i~~itkdg  250 (261)
                      |++|++|+
T Consensus       209 v~ii~k~~  216 (238)
T d1iruf_         209 IGIVGKDL  216 (238)
T ss_dssp             EEEEETTE
T ss_pred             EEEEeCCC
Confidence            99999984

>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic) {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: Proteasome alpha subunit (non-catalytic)
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=9.9e-35  Score=254.56  Aligned_cols=183  Identities=13%  Similarity=0.139  Sum_probs=152.0

Q ss_pred             hhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------
Q psy10322          7 QILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------   75 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------   75 (261)
                      |.+..+....+.++ ++|+|+|||+|+||||||+|+|.+        +.+|||+|+     +|++||++           
T Consensus         3 ~~~~~q~eyA~~av-~~GtT~vgi~~~~GVvlaad~r~~--------s~~KI~~i~-----~~i~~~~sG~~aD~~~l~~   68 (227)
T d1q5qa_           3 QIMRDRSELARKGI-ARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELY-----DRLGFAAVGKYNEFENLRR   68 (227)
T ss_dssp             HHHHHHHHHHHHHH-HTSCCEEEEECSSEEEEEECCSCS--------SSCSEEEEE-----TTEEEEEEECHHHHHHHHH
T ss_pred             hhhHhHHHHHHHHH-hcCCCEEEEEECCEEEEEEccCCC--------CcceEEEec-----CceEEEecCchHHHHHHHH
Confidence            34444445555664 679999999999999999999853        468999999     99999886           


Q ss_pred             HHHHHHHhhhhhcCC-cCCHHHHHHHHHHHH---hccccCCcceEEEEEEEcCC---CCeEEEEECCCCceeecC-EEEE
Q psy10322         76 ITILPFQMYLHEHNK-VMSTTSLAKMISIMM---YGKRFFPYYTSTIIAGLDPE---GKGCVYSYDPIGHTERAN-FRAG  147 (261)
Q Consensus        76 ~lr~~~~~y~~~~g~-~isv~~lA~~Is~~l---y~~r~~P~~v~~IVaG~D~~---g~p~Ly~iDp~Gs~~~~~-~~a~  147 (261)
                      +++.+++.|++.++. +++++.+++.+++++   |..++|||+|++||||||..   ++|+||++||+|++.+++ +++.
T Consensus        69 ~~r~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~rP~gvs~lvaG~D~~g~~~~p~Ly~vDpsG~~~~~~~~~~~  148 (227)
T d1q5qa_          69 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVM  148 (227)
T ss_dssp             HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEE
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEEecCCCCCCCEEEEEccccceeeecccccC
Confidence            778889999999984 689999999999875   34467899999999999963   469999999999988755 5677


Q ss_pred             ecChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHH
Q psy10322        148 GSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAF  227 (261)
Q Consensus       148 G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al  227 (261)
                      |+++..++++|++.|                                                +++||+|||++++++||
T Consensus       149 g~~s~~~~~~Le~~y------------------------------------------------~~~ms~eea~~la~~aL  180 (227)
T d1q5qa_         149 GGTTEPIATAMRESY------------------------------------------------RADLDLEAAVGIAVNAL  180 (227)
T ss_dssp             SSSHHHHHHHHHHHC------------------------------------------------CTTCCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhc------------------------------------------------cCCCCHHHHHHHHHHHH
Confidence            778889999999986                                                89999999999999999


Q ss_pred             HHHHhcccC----CCCcEEEEEEEcCCE
Q psy10322        228 TAAAERDIY----TGDGVHLCAITKDGI  251 (261)
Q Consensus       228 ~~~~~rd~~----~g~~v~i~~itkdg~  251 (261)
                      +.+.++|..    ++++++|++++++|.
T Consensus       181 ~~a~~~d~~~~~~~~~~ievavi~k~~~  208 (227)
T d1q5qa_         181 RQGGAGEGEKRNVDVASLEVAVLDQSRP  208 (227)
T ss_dssp             TTCC--------CCSSCSEEEEEETTSS
T ss_pred             HHHhhcccccCCcCcceEEEEEEECCCC
Confidence            999998853    577899999999985

>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=4.5e-26  Score=188.70  Aligned_cols=165  Identities=15%  Similarity=0.115  Sum_probs=123.5

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEE-ehH------HHHHHHHhhhhhcCCcCCHHHH
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM-IFT------ITILPFQMYLHEHNKVMSTTSL   97 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~-~~s------~lr~~~~~y~~~~g~~isv~~l   97 (261)
                      ||+|||+|+||||||+|+|++.|.++.+++.+||++|+     +++++ +.+      ........+.+... .......
T Consensus         1 TTivai~~~dGVVlAaDtRaS~G~~i~~r~~~Ki~~i~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   74 (173)
T d1g3ka_           1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLY-----NGKVLAGFAGGTADAFTLFELFERKLEMH-QGHLLKS   74 (173)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEET-----TTTEEEEEESCHHHHHHHHHHHHHHHHHT-TTCHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEeEcCCcceEEEec-----CCcEEEEeeehhHhHHHHHHHHHHHHHhh-cCcchhH
Confidence            69999999999999999999999999999999999998     77444 332      11122222222222 2333444


Q ss_pred             HHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchhhccc
Q psy10322         98 AKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLG  177 (261)
Q Consensus        98 A~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~  177 (261)
                      +..++..++..+..+..... +.|.|.+++|.++..|+.|.+.+.++.|+|+|+.++++.|+..+               
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~~~l~~~~---------------  138 (173)
T d1g3ka_          75 AVELAKDWRTDRALRKLEAM-LIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALV---------------  138 (173)
T ss_dssp             HHHHHHHHHHSTTGGGCCCE-EEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHhhhhcccccc-cccccCCCcceecccCceEEecCCCEEEecchHHHHHHHHHHhh---------------
Confidence            44555554444333333333 44556678899999999999999999999999999999999876               


Q ss_pred             ccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        178 GIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                         +++.+||.+++++||+.|.+||+.+|++|+|-.|
T Consensus       139 -----------------------------------~~~~~~A~ela~~Ai~~Aae~dvyTgd~~~i~~~  172 (173)
T d1g3ka_         139 -----------------------------------ENTELSAHEIVEKSLRIAGDICVFTNTNFTIEEL  172 (173)
T ss_dssp             -----------------------------------HHCCCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             -----------------------------------hcCCCCHHHHHHHHHHHHHhhcEEcCCcEEEEEC
Confidence                                               1233468899999999999999999999988765

>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.8e-26  Score=192.70  Aligned_cols=165  Identities=16%  Similarity=0.056  Sum_probs=115.1

Q ss_pred             cCCceEEEEEcCCeEEEEEecccccCceeecC-CcCcEEEecCcCCCCe-EEEehH------HHHHHHHhhhhhcCCcCC
Q psy10322         22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTR-EQSKLFDHYYYRPTYN-FLMIFT------ITILPFQMYLHEHNKVMS   93 (261)
Q Consensus        22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~-~~~KIf~I~~~~~~d~-i~~~~s------~lr~~~~~y~~~~g~~is   93 (261)
                      .+|||+|||+|+||||||+|+|+++|.++..+ ..+|+++++     ++ ++++.+      ...........+..+.-.
T Consensus         3 ~~GTTivai~~~dGVvlAaDtR~S~G~~i~~~~~~~ki~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (180)
T d2z3ba1           3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLF-----NGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNL   77 (180)
T ss_dssp             BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEET-----TTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCH
T ss_pred             CCCeEEEEEEECCEEEEEECCcccCCceeEecccceEEEEec-----ccceecccchHHHHHHHHHHHHHHHHHhhcccc
Confidence            47999999999999999999999999877765 578999998     75 555544      111111111122221111


Q ss_pred             HHHHHHHHHHH----HhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322         94 TTSLAKMISIM----MYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS  169 (261)
Q Consensus        94 v~~lA~~Is~~----ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~  169 (261)
                      ...........    ++.++..++.+..       ..++.++..|+.+......+.|+|+|+.+++++||+.|       
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~g~l~~~~-------  143 (180)
T d2z3ba1          78 KRAAVELAKEWRSDKVLRKLEAMLIVMN-------QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALK-------  143 (180)
T ss_dssp             HHHHHHHHHHHHHCTTGGGCCCCEEEEC-------SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHH-------
T ss_pred             chhHHHHHHHHhHHHHHHHhhcceeeee-------ccccccccCCceeecccccEEEEcCchHHHHHHHHHHh-------
Confidence            12222222211    2222223333322       23466666667776667779999999999999999998       


Q ss_pred             cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                               +++|++|||++|+++||+.|.|||+++|++++|-+|
T Consensus       144 -----------------------------------------~~~~s~~eA~~l~~~Al~~A~e~dvyT~~~~~~~~i  179 (180)
T d2z3ba1         144 -----------------------------------------KHAGESMSASEIARAALETAGEICVYTNDQIILEEL  179 (180)
T ss_dssp             -----------------------------------------HHHGGGCCHHHHHHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred             -----------------------------------------hcCCCccCHHHHHHHHHHHHHhhcEEcCCcEEEEEe
Confidence                                                     789999999999999999999999999999999876

>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Proteasome subunits
domain: HslV (ClpQ) protease
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=8.3e-25  Score=180.41  Aligned_cols=165  Identities=16%  Similarity=0.060  Sum_probs=119.0

Q ss_pred             ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH------HHHHHHHhhhhhcCCcCCHHHHH
Q psy10322         25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT------ITILPFQMYLHEHNKVMSTTSLA   98 (261)
Q Consensus        25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s------~lr~~~~~y~~~~g~~isv~~lA   98 (261)
                      ||+|||+++||||||+|+|++.|.++.+++.+|+++|+     ++++++.+      ........+...+..........
T Consensus         1 TTivav~~~~gVviAaDtR~S~G~~i~~r~~~Ki~~i~-----~~~~~~~~g~~ad~~~~~~~~~~~~~~~~~~~~~~~~   75 (171)
T d1m4ya_           1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLG-----EGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAA   75 (171)
T ss_dssp             CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEET-----TTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEec-----CCcEEEEEeechhhHHHHHHHHHHHHHHhhccchhhH
Confidence            69999999999999999999999999999999999999     99888765      11111111111111112222222


Q ss_pred             HHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchhhcccc
Q psy10322         99 KMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGG  178 (261)
Q Consensus        99 ~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~  178 (261)
                      ...+..+...+ .++....++.+.+ +++|+++..|+.|.....++.|+|+|+.+++++|+..|                
T Consensus        76 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~l~~~~----------------  137 (171)
T d1m4ya_          76 VELAKDWRTDR-VLRRLEALLLVAD-KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALL----------------  137 (171)
T ss_dssp             HHHHHHHHHCT-TGGGCCCEEEEEC-SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHhh-hhcccccccceec-CCcceEEecCCceeeecCCEEEEcchHHHHHHHHHhhc----------------
Confidence            22222222221 1222233344455 56799999999999999999999999999999999876                


Q ss_pred             cccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322        179 IRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI  246 (261)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i  246 (261)
                                                     ++++++   |.+++++||+.|.++|+.+|++++|-.|
T Consensus       138 -------------------------------~~~~~~---a~el~~~Ai~~A~e~dvyTg~~~~i~~~  171 (171)
T d1m4ya_         138 -------------------------------RNTDLS---AREIVEKAMTIAGEICIYTNQNIVIEEV  171 (171)
T ss_dssp             -------------------------------HHCCCC---HHHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred             -------------------------------cCCCCC---HHHHHHHHHHHHHhhceEcCCcEEEEEC
Confidence                                           024554   7789999999999999999999998654