Psyllid ID: psy10335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Secondary Structure (PSIPRED)
cccccccEEEEEEEEccccccccccccEEEEEEEcccEEEEHHHHHHHHHHHHHccccccEEEEEEEccccccEEEEEEEEEEEEccccccccHHHHHccHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEEccccccccccccEEEEEEEccccEEEHHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcHHHcccHHHHHHccccccccccccccccccccEEEEEcccEEcc
Coil and Loop (DISEMBL)
MKAKGLLKEYEVIGrklptekekitplykmrifapddiVAKSRFWYFLRQLKKFKKSTGEIVSLKLiseksptkiknfgiwlrydsrsgthnmyreyrdlsvsgAVTQCYRDMGARHRARAHSIQIIKLEVVKasacrrplvkqfhdsrirfplpkriqhvnrmnlfssrrpktyfl
Flexible Loop (DISEMBL)
mkakgllkeyevigrklptekekitplykmrifapdDIVAKSRFWYFLRQLKkfkkstgeivslkliseksptkiknfgiwlrydsrsgTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLvkqfhdsrirfplpkriqhvnrmnlfssrrpktyfl
Low Complexity Region (SEG)
MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Disordered region (IsUnstruct)
********EYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRM*************
Disordered Region (DISOPRED)
***KGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Disordered Region (DISEMBL)
MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Disordered Region (DISPRO)
****GLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q8WQI7	177	60S ribosomal protein L18	N/A	N/A	1.0	1.0	0.819	4e-83
P41093	177	60S ribosomal protein L18	yes	N/A	0.994	0.994	0.778	1e-78
Q7ZWJ4	176	60S ribosomal protein L18	yes	N/A	0.994	1.0	0.670	5e-70
Q02543	176	60S ribosomal protein L18	yes	N/A	0.994	1.0	0.687	5e-70
Q3T003	176	60S ribosomal protein L18	yes	N/A	0.994	1.0	0.687	5e-70
P62718	176	60S ribosomal protein L18	yes	N/A	0.994	1.0	0.681	2e-69
P62717	176	60S ribosomal protein L18	yes	N/A	0.994	1.0	0.681	2e-69
Q90YU9	176	60S ribosomal protein L18	N/A	N/A	0.994	1.0	0.659	3e-69
O57561	176	60S ribosomal protein L18	N/A	N/A	0.994	1.0	0.636	1e-66
O44480	180	60S ribosomal protein L18	yes	N/A	0.960	0.944	0.570	2e-59

>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1

 Score =  306 bits (785), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 145/177 (81%), Positives = 158/177 (89%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKEYEVIGRKLP+E E   PLYKMRIF+PD IVAKSRFWYFLRQLKKFKK+TGE
Sbjct: 1   MKAKGELKEYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVS++ I EKSP KIKNFGIWLRY+SRSG HNMYREYRDLSV GAVTQCYRDMGARHRAR
Sbjct: 61  IVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+EV+KASACRRP VKQFH+S IRFPLPKR+ H  R+N F+ +RP TYFL
Sbjct: 121 AHSIQIIKVEVIKASACRRPQVKQFHNSTIRFPLPKRVHHHKRLNTFAYKRPSTYFL 177

Spodoptera frugiperda (taxid: 7108)

>sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A PE=1 SV=1

 Score =  291 bits (746), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 137/176 (77%), Positives = 155/176 (88%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           M+AKGLLKEYEV+GRKLP+EKE  TPLYKMRIFAPD+IVAKSRFWYFLRQLKKFKK+TGE
Sbjct: 1   MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVS+K + E SP KIKNFGIWLRYDSRSGTHNMYREYRDL+V GAVTQCYRDMGARHRAR
Sbjct: 61  IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSIQIIK++ + A+  RR  VKQFHDS+I+FPL +R+ H     LFS R+P+TYF
Sbjct: 121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176

Drosophila melanogaster (taxid: 7227)

>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1

 Score =  263 bits (671), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 118/176 (67%), Positives = 146/176 (82%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LP+ K    PLY+MRIFAP+ +VAKSRFWYF+ QL+K KK++GE
Sbjct: 1   MKASGTLREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IV   L+ EKSP K+KNFGIWLRYDSRSGTHNMYREYRDL+ SGAVTQCYRDMGARHRAR
Sbjct: 61  IVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AH+IQI+K++V+ A+ CRRP +KQFHDS+I+FPLP R+        F+++RP T+F
Sbjct: 121 AHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

Danio rerio (taxid: 7955)

>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2

 Score =  263 bits (671), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 121/176 (68%), Positives = 144/176 (81%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct: 1   MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct: 61  IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

Homo sapiens (taxid: 9606)

>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1

 Score =  263 bits (671), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 121/176 (68%), Positives = 144/176 (81%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct: 1   MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct: 61  IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct: 121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

Bos taurus (taxid: 9913)

>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 143/176 (81%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct: 1   MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct: 61  IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSIQI+K+E + A  CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct: 121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

Rattus norvegicus (taxid: 10116)

>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1

 Score =  261 bits (667), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 120/176 (68%), Positives = 143/176 (81%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct: 1   MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct: 61  IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSIQI+K+E + A  CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct: 121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

Mus musculus (taxid: 10090)

>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2 SV=1

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 116/176 (65%), Positives = 144/176 (81%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LP+ K    PLY+MRIFAP+ +VAKSRFWYF+ QL+K KK+ GE
Sbjct: 1   MKASGTLREYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
            V   L+ E+SP K+KNFGIWLRYDSRSGTHNMYREYRDL+ SGAVTQCYRDMGARHRAR
Sbjct: 61  TVYCGLVHEQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AH+IQI+K++V+ A+ CRR  +KQFHDS+I+FPLP R+        F++RRP+T+F
Sbjct: 121 AHAIQIMKVQVIAANKCRRAAIKQFHDSKIKFPLPHRVLRRQHKPRFTTRRPQTFF 176

Ictalurus punctatus (taxid: 7998)

>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1

 Score =  251 bits (642), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 140/176 (79%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKA G L+EY+V+GR LP+ K    PLY+MRIFAP+ +VAKSRFWYF+ QL+K KK+ GE
Sbjct: 1   MKASGTLREYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
            V   L+ EK+P K+KNFG+WLR DSRSGTHNMYREYRDL+ S AVTQCYRDMGARHRAR
Sbjct: 61  TVYCGLVHEKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSI I+K++ + A+ CRRP +KQFHDS+I+FPLP R+        F+++RP T+F
Sbjct: 121 AHSIHIMKVQEIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHNPRFTTKRPNTFF 176

Salmo salar (taxid: 8030)

>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3 SV=2

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 97/170 (57%), Positives = 136/170 (80%)

Query: 7   LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
           L EY V+GRK+PTEKE +TP++KM+IFA + ++AKSRFWYF+  L++ KK+ GEI+S+K 
Sbjct: 10  LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69

Query: 67  ISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQI 126
           + EK+P  +KN+G+WL+YDSR+G HNMYREYRD +V+GAVTQCYRDMGARHRA+A  I I
Sbjct: 70  VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHI 129

Query: 127 IKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           +K++ VKA   +R  +K FHD++IRFPLP R+     +++F++ R  T+F
Sbjct: 130 LKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
110671436	177	putative ribosomal protein L18A [Diaphor	1.0	1.0	1.0	3e-99
48130977	177	PREDICTED: 60S ribosomal protein L18a [A	1.0	1.0	0.898	6e-88
383864805	177	PREDICTED: 60S ribosomal protein L18a-li	1.0	1.0	0.887	9e-88
340708931	177	PREDICTED: 60S ribosomal protein L18a-li	1.0	1.0	0.887	3e-87
62083377	177	ribosomal protein L18a [Lysiphlebus test	0.994	0.994	0.886	4e-87
307183110	177	60S ribosomal protein L18a [Camponotus f	1.0	1.0	0.881	5e-87
380028486	207	PREDICTED: 60S ribosomal protein L18a-li	0.988	0.845	0.897	9e-87
156544508	177	PREDICTED: 60S ribosomal protein L18a-li	1.0	1.0	0.881	1e-86
307203948	177	60S ribosomal protein L18a [Harpegnathos	1.0	1.0	0.875	2e-86
307169151	177	60S ribosomal protein L18a [Camponotus f	1.0	1.0	0.875	2e-86

>gi|110671436|gb|ABG81969.1| putative ribosomal protein L18A [Diaphorina citri]

 Score =  365 bits (938), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL
Sbjct: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48130977|ref|XP_393322.1| PREDICTED: 60S ribosomal protein L18a [Apis mellifera]

 Score =  328 bits (840), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 159/177 (89%), Positives = 165/177 (93%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEFEVIGRKLPTEKEKSTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I EKSP KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIPEKSPVKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+EVVKA+ CRRP VKQFHDS+IRFPLPKRI H NRM LFS R+P+TYFL
Sbjct: 121 AHSIQIIKVEVVKAANCRRPQVKQFHDSKIRFPLPKRIHHRNRMPLFSVRKPRTYFL 177

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864805|ref|XP_003707868.1| PREDICTED: 60S ribosomal protein L18a-like [Megachile rotundata]

 Score =  327 bits (839), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 157/177 (88%), Positives = 166/177 (93%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEFEVIGRKLPTEKEKTTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I+EK+P KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIAEKTPIKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+EVVKA+ CRRP VKQFHDS+I+FPLPKRI H NRM LFS R+P+TYFL
Sbjct: 121 AHSIQIIKVEVVKAANCRRPQVKQFHDSKIKFPLPKRIHHRNRMPLFSVRKPRTYFL 177

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708931|ref|XP_003393070.1| PREDICTED: 60S ribosomal protein L18a-like [Bombus terrestris] gi|350419030|ref|XP_003492047.1| PREDICTED: 60S ribosomal protein L18a-like [Bombus impatiens]

 Score =  325 bits (834), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 157/177 (88%), Positives = 164/177 (92%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKE  TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEFEVIGRKLPTEKETTTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I EKSP KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIPEKSPVKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+EVVKA+ CRRP VKQFHDS+I+FPLPKRI H NRM LFS R+P+TYFL
Sbjct: 121 AHSIQIIKVEVVKAANCRRPQVKQFHDSKIKFPLPKRIHHRNRMPLFSVRKPRTYFL 177

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62083377|gb|AAX62413.1| ribosomal protein L18a [Lysiphlebus testaceipes] gi|62083381|gb|AAX62415.1| ribosomal protein L18a variant 1 [Lysiphlebus testaceipes]

 Score =  325 bits (833), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 156/176 (88%), Positives = 164/176 (93%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKEYEVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEYEVIGRKLPTEKEKTTPLYKMRIFAPDMIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK + EKSP KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQVYEKSPVKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           AHSIQIIK+E+VKAS CRRP VKQFHD++IRFPLPKRIQH N+M  FS R+P+TYF
Sbjct: 121 AHSIQIIKVEIVKASNCRRPQVKQFHDAKIRFPLPKRIQHSNQMPRFSVRKPRTYF 176

Source: Lysiphlebus testaceipes

Species: Lysiphlebus testaceipes

Genus: Lysiphlebus

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183110|gb|EFN70027.1| 60S ribosomal protein L18a [Camponotus floridanus]

 Score =  325 bits (832), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 156/177 (88%), Positives = 165/177 (93%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEFEVIGRKLPTEKEKTTPLYKMRIFAPDVIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I EK+P KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIPEKTPIKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+E+VKA+ CRRP VKQFHDS+I+FPLPKRI H NRM LFS R+P+TYFL
Sbjct: 121 AHSIQIIKVEIVKAANCRRPQVKQFHDSKIKFPLPKRIHHKNRMPLFSVRKPRTYFL 177

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028486|ref|XP_003697931.1| PREDICTED: 60S ribosomal protein L18a-like [Apis florea]

 Score =  324 bits (830), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 157/175 (89%), Positives = 163/175 (93%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEFEVIGRKLPTEKEKTTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I EKSP KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIPEKSPVKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTY 175
           AHSIQIIK+EVVKA+ CRRP VKQFHDS+IRFPLPKRI H NRM LFS R+P+TY
Sbjct: 121 AHSIQIIKVEVVKAANCRRPQVKQFHDSKIRFPLPKRIHHRNRMPLFSVRKPRTY 175

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544508|ref|XP_001605284.1| PREDICTED: 60S ribosomal protein L18a-like [Nasonia vitripennis]

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 156/177 (88%), Positives = 164/177 (92%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKEYEVIGR+LPTEK K TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEYEVIGRQLPTEKVKTTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I+EKSP KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIAEKSPIKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+EVVKA+ CRRP VKQFHDS+IRFPLPKRIQH + M  FS R+P+TYFL
Sbjct: 121 AHSIQIIKVEVVKAANCRRPQVKQFHDSKIRFPLPKRIQHSSSMPTFSVRKPRTYFL 177

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203948|gb|EFN82855.1| 60S ribosomal protein L18a [Harpegnathos saltator]

 Score =  323 bits (828), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/177 (87%), Positives = 164/177 (92%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGELKEFEVIGRKLPTEKEKTTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I EK P KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGA+TQCYRDMGARHRAR
Sbjct: 61  IVSLKQIPEKIPIKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAITQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+EVVKA+ CRRP +KQFHDS+I+FPLPKRI H NRM LFS R+P+TYFL
Sbjct: 121 AHSIQIIKVEVVKAANCRRPQIKQFHDSKIKFPLPKRIHHRNRMPLFSVRKPRTYFL 177

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169151|gb|EFN61967.1| 60S ribosomal protein L18a [Camponotus floridanus]

 Score =  323 bits (827), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/177 (87%), Positives = 165/177 (93%)

Query: 1   MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           MKAKG LKE+EVIGRKLPTEKEK TPLYKMRIFAPD IVAKSRFWYFLRQLKKFKKSTGE
Sbjct: 1   MKAKGDLKEFEVIGRKLPTEKEKTTPLYKMRIFAPDAIVAKSRFWYFLRQLKKFKKSTGE 60

Query: 61  IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
           IVSLK I EK+P KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR
Sbjct: 61  IVSLKQIPEKTPIKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120

Query: 121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYFL 177
           AHSIQIIK+E+VKA+ CRRP VKQFHDS+I+FPLPKRI H +RM LFS R+P+TYFL
Sbjct: 121 AHSIQIIKVEIVKAANCRRPQVKQFHDSKIKFPLPKRIHHRSRMPLFSVRKPRTYFL 177

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
FB|FBgn0010409	177	RpL18A "Ribosomal protein L18A	0.994	0.994	0.778	1.6e-72
UNIPROTKB|J9NVM6	176	RPL18A "60S ribosomal protein	0.994	1.0	0.693	2.5e-65
UNIPROTKB|E2RL34	176	RPL18A "60S ribosomal protein	0.994	1.0	0.687	8.5e-65
UNIPROTKB|F1S935	224	RPL18A "Uncharacterized protei	0.994	0.785	0.687	8.5e-65
ZFIN|ZDB-GENE-040426-1071	176	rpl18a "ribosomal protein L18a	0.994	1.0	0.670	1.1e-64
UNIPROTKB|Q3T003	176	RPL18A "60S ribosomal protein	0.994	1.0	0.687	1.8e-64
UNIPROTKB|Q02543	176	RPL18A "60S ribosomal protein	0.994	1.0	0.687	1.8e-64
MGI|MGI:1924058	176	Rpl18a "ribosomal protein L18A	0.994	1.0	0.681	4.7e-64
RGD|1302976	176	Rpl18a "ribosomal protein L18A	0.994	1.0	0.681	4.7e-64
UNIPROTKB|P62718	176	Rpl18a "60S ribosomal protein	0.994	1.0	0.681	4.7e-64

FB|FBgn0010409 RpL18A "Ribosomal protein L18A" [Drosophila melanogaster (taxid:7227)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 137/176 (77%), Positives = 155/176 (88%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             M+AKGLLKEYEV+GRKLP+EKE  TPLYKMRIFAPD+IVAKSRFWYFLRQLKKFKK+TGE
Sbjct:     1 MRAKGLLKEYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IVS+K + E SP KIKNFGIWLRYDSRSGTHNMYREYRDL+V GAVTQCYRDMGARHRAR
Sbjct:    61 IVSIKQVYETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQIIK++ + A+  RR  VKQFHDS+I+FPL +R+ H     LFS R+P+TYF
Sbjct:   121 AHSIQIIKVDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKLFSFRKPRTYF 176

GO:0006412 "translation" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005840 "ribosome" evidence=NAS

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|J9NVM6 RPL18A "60S ribosomal protein L18a" [Canis lupus familiaris (taxid:9615)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 122/176 (69%), Positives = 145/176 (82%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+ H      F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLHRQHKPRFTTKRPNTFF 176

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RL34 RPL18A "60S ribosomal protein L18a" [Canis lupus familiaris (taxid:9615)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 121/176 (68%), Positives = 145/176 (82%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K +  PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1S935 RPL18A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 121/176 (68%), Positives = 145/176 (82%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K +  PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:    49 MKASGTLREYKVVGRCLPTPKCRTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 108

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:   109 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 168

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   169 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 224

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-040426-1071 rpl18a "ribosomal protein L18a" [Danio rerio (taxid:7955)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 118/176 (67%), Positives = 146/176 (82%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LP+ K    PLY+MRIFAP+ +VAKSRFWYF+ QL+K KK++GE
Sbjct:     1 MKASGTLREYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV   L+ EKSP K+KNFGIWLRYDSRSGTHNMYREYRDL+ SGAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGLVFEKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AH+IQI+K++V+ A+ CRRP +KQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHAIQIMKVQVIAANKCRRPAIKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q3T003 RPL18A "60S ribosomal protein L18a" [Bos taurus (taxid:9913)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 121/176 (68%), Positives = 144/176 (81%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q02543 RPL18A "60S ribosomal protein L18a" [Homo sapiens (taxid:9606)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 121/176 (68%), Positives = 144/176 (81%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + AS CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:1924058 Rpl18a "ribosomal protein L18A" [Mus musculus (taxid:10090)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 120/176 (68%), Positives = 143/176 (81%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + A  CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1302976 Rpl18a "ribosomal protein L18A" [Rattus norvegicus (taxid:10116)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 120/176 (68%), Positives = 143/176 (81%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + A  CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|P62718 Rpl18a "60S ribosomal protein L18a" [Rattus norvegicus (taxid:10116)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 120/176 (68%), Positives = 143/176 (81%)

Query:     1 MKAKGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
             MKA G L+EY+V+GR LPT K    PLY+MRIFAP+ +VAKSRFWYF+ QLKK KKS+GE
Sbjct:     1 MKASGTLREYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGE 60

Query:    61 IVSLKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRAR 120
             IV    + EKSP ++KNFGIWLRYDSRSGTHNMYREYRDL+ +GAVTQCYRDMGARHRAR
Sbjct:    61 IVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRAR 120

Query:   121 AHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
             AHSIQI+K+E + A  CRRP VKQFHDS+I+FPLP R+        F+++RP T+F
Sbjct:   121 AHSIQIMKVEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WQI7	RL18A_SPOFR	No assigned EC number	0.8192	1.0	1.0	N/A	N/A
P62718	RL18A_RAT	No assigned EC number	0.6818	0.9943	1.0	yes	N/A
Q9ATF5	RL18A_CASSA	No assigned EC number	0.5369	0.8418	0.8370	N/A	N/A
Q943F3	RL18A_ORYSJ	No assigned EC number	0.5410	0.8248	0.8202	yes	N/A
P51418	R18A2_ARATH	No assigned EC number	0.5616	0.8248	0.8202	no	N/A
P0CX24	RL20B_YEAST	No assigned EC number	0.5438	0.9491	0.9767	yes	N/A
Q3T003	RL18A_BOVIN	No assigned EC number	0.6875	0.9943	1.0	yes	N/A
P05732	RL20_SCHPO	No assigned EC number	0.5402	0.9604	0.9659	yes	N/A
Q7ZWJ4	RL18A_DANRE	No assigned EC number	0.6704	0.9943	1.0	yes	N/A
P62717	RL18A_MOUSE	No assigned EC number	0.6818	0.9943	1.0	yes	N/A
P41093	RL18A_DROME	No assigned EC number	0.7784	0.9943	0.9943	yes	N/A
O57561	RL18A_SALSA	No assigned EC number	0.6363	0.9943	1.0	N/A	N/A
P0CX23	RL20A_YEAST	No assigned EC number	0.5438	0.9491	0.9767	yes	N/A
Q9LUD4	R18A3_ARATH	No assigned EC number	0.5273	0.8248	0.8202	no	N/A
Q90YU9	RL18A_ICTPU	No assigned EC number	0.6590	0.9943	1.0	N/A	N/A
Q54MK8	RL18A_DICDI	No assigned EC number	0.5176	0.9491	0.9824	yes	N/A
Q02543	RL18A_HUMAN	No assigned EC number	0.6875	0.9943	1.0	yes	N/A
O44480	RL18A_CAEEL	No assigned EC number	0.5705	0.9604	0.9444	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	177
COG2157	85	COG2157, RPL20A, Ribosomal protein L20A (L18A) [Tr	2e-17
pfam01775	55	pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX pro	7e-16

>gnl|CDD|225068 COG2157, RPL20A, Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 30/85 (35%), Positives = 47/85 (55%)

Query: 69  EKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIK 128
           E  P   +  GIW+ YDSRSG H   +E R L    A+ + Y D G+RH+ +  SI+I +
Sbjct: 1   EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEE 60

Query: 129 LEVVKASACRRPLVKQFHDSRIRFP 153
           +E ++      P+VK+     ++FP
Sbjct: 61  VEEIEPEDVEDPVVKRLLTEDLKFP 85

Length = 85

>gnl|CDD|216694 pfam01775, Ribosomal_L18ae, Ribosomal L18ae/LX protein domain

 Score = 67.6 bits (166), Expect = 7e-16
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 83  RYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQ 125
              SRSGTHN Y+EYR L+  GAV + Y ++G+RHR +   IQ
Sbjct: 13  TEKSRSGTHNFYKEYRALNEEGAVEKVYSELGSRHRLKRSQIQ 55

This family includes eukaryotic L18ae as well as archaebacterial specific LX. Ribosomal protein L18ae forms part of the 60S ribosomal subunit. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
KOG0829|consensus	169		100.0
PF01775	124	Ribosomal_L18ae: Ribosomal L18ae/LX protein domain	100.0
PRK00773	76	rplX 50S ribosomal protein LX; Validated	100.0
COG2157	85	RPL20A Ribosomal protein L20A (L18A) [Translation,	99.96

>KOG0829|consensus

Probab=100.00  E-value=3.4e-97  Score=598.92  Aligned_cols=169  Identities=67%  Similarity=1.132  Sum_probs=167.7

Q ss_pred             eEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEEecC
Q psy10335          8 KEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDSR   87 (177)
Q Consensus         8 ~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY~Sr   87 (177)
                      +||+||||+||||++|+|+||+|+|||||||+|||||||||++|+|||||+||||+|+||+|++|+.|||||||||||||
T Consensus         1 kEY~VvGr~lPTe~~p~p~l~~m~ifa~N~V~AKsrfwyfl~~l~KvKks~Geiv~i~qi~E~~p~~vkNfGIwlrYdSR   80 (169)
T KOG0829|consen    1 KEYQVVGRALPTEKEPTPKLYRMRIFAPNHVVAKSRFWYFLSKLKKVKKSSGEIVAINQIFEKSPLKVKNFGIWLRYDSR   80 (169)
T ss_pred             CceEEeeeecCCCCCCCCceEEEEEeccceeehhHHHHHHHHHHHHHhhcCceEEEeceecCCCCceeeeeEEEEEEccC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCCCcCcCccccccccCCCce
Q psy10335         88 SGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLF  167 (177)
Q Consensus        88 sgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~kikFPl~~r~~~~~~~~~F  167 (177)
                      ||||||||||||+|.+|||||||+|||||||||+++||||+|+||++++|+|+.+|||||++|+||||||+++++.+++|
T Consensus        81 sG~HNmYkEyRd~t~~gAV~q~y~dMaaRhRar~~~I~Iikv~~v~a~~~kR~~vkqFhd~kikFPL~~rv~~~k~~~~f  160 (169)
T KOG0829|consen   81 SGTHNMYKEYRDTTRVGAVEQCYRDMAARHRARFRSIQIIKVAEVPAEDCKRAYVKQFHDSKIKFPLPHRVVNRKSKKTF  160 (169)
T ss_pred             CcchHHHHHHHHhhhhhHHHHHHHHHHHHhhhcccceeEEEEeeeeHHHhchHHHHHhhccCcccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCcccC
Q psy10335        168 SSRRPKTYF  176 (177)
Q Consensus       168 ~~~rP~t~~  176 (177)
                      ++.||||||
T Consensus       161 s~~rP~tf~  169 (169)
T KOG0829|consen  161 STKRPSTFF  169 (169)
T ss_pred             ccCCCcccC
Confidence            999999997

>PF01775 Ribosomal_L18ae: Ribosomal L18ae/LX protein domain; InterPro: IPR023573 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.4e-72  Score=441.31  Aligned_cols=124  Identities=73%  Similarity=1.208  Sum_probs=112.4

Q ss_pred             eeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEEec
Q psy10335          7 LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRYDS   86 (177)
Q Consensus         7 l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY~S   86 (177)
                      |+||+|+||+||||++|+|+||+|+|||||+|+|||||||||++|+|+||++||||+|++|+|++|+.||||||||+|||
T Consensus         1 l~ey~vvgr~lpt~k~~~p~iy~m~ifa~n~vvAkSrfwy~~~~~~K~Kk~~geiv~~~~i~ek~p~~VKnfgI~lry~s   80 (124)
T PF01775_consen    1 LKEYQVVGRKLPTEKEPNPPIYRMRIFAPNHVVAKSRFWYFLRKLKKMKKTSGEIVSCKEIFEKNPTKVKNFGIWLRYDS   80 (124)
T ss_dssp             -EEEEEEEEETT-STTS---EEEEEEEESSHHHHHHHHHHHHHHCTS--STTEEEEEEEEE-SSSTTS-EEEEEEEEEEE
T ss_pred             CeEEEEEEecCCCCCCCCCCeEEEEEecCCcEEEEhhHHHHHHHHHhhhcccceEEEeEcccCCCCcceeEEEEEEEEec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeE
Q psy10335         87 RSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLE  130 (177)
Q Consensus        87 rsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVe  130 (177)
                      |+|+|||||||||+|++|||||||+||||||++|+++|||++|+
T Consensus        81 r~g~~nfyKEyra~s~~~Aveq~YsdmGSrHrvkr~~I~I~~Ve  124 (124)
T PF01775_consen   81 RSGTHNFYKEYRALSENGAVEQVYSDMGSRHRVKRSSIQIIKVE  124 (124)
T ss_dssp             SSCEEEEEEEEEESCHHHHHHHHHHHHHHTTT--GGGEEEEEEE
T ss_pred             CCccEEEEEEeccCCHHHHHHHHHHHhhhhhCCCccceEEEEeC
Confidence            99999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the eukaryotic 60S ribosomal protein L18ae [] and the archaea 50S ribosomal protein LX. Rat ribosomal protein L18 is homologous to Xenopus laevis L14 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A1D_X 4A1B_X 4A18_X 4A19_X 2JXT_A 3IZR_S 3IZS_S.

>PRK00773 rplX 50S ribosomal protein LX; Validated

Probab=100.00  E-value=8.8e-34  Score=205.79  Aligned_cols=73  Identities=16%  Similarity=0.336  Sum_probs=71.7

Q ss_pred             eeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335         75 IKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD  147 (177)
Q Consensus        75 VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~  147 (177)
                      +||||||++|+||+|+|||||||||++++|||+|||+||||||++++++|+|++|+||+++||+||+++||..
T Consensus         2 ~k~f~V~g~~~~~~~~~~f~Ke~ra~~~~~Ave~~Ys~~gSrH~~kr~~I~I~~V~ei~~~e~~~~~vkq~~~   74 (76)
T PRK00773          2 MKIYRVKGTFLAGDEWQKFTKEVRALNEKDALEKVYSLFGSKHKVKRTQIKIEEVSEISPEEAEDPRVRELAK   74 (76)
T ss_pred             ceEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCcccEEEEEEEEeCHHHcCCHHHHHHhh
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999974

>COG2157 RPL20A Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=5e-30  Score=189.88  Aligned_cols=84  Identities=35%  Similarity=0.672  Sum_probs=81.7

Q ss_pred             CCCceeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCC
Q psy10335         70 KSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSR  149 (177)
Q Consensus        70 k~p~~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~k  149 (177)
                      ..|..++|+|||+.|||++|+||||||+||+++++|++.+||||||||++++++|+|++|+||+++|+.||.|+||++.+
T Consensus         2 ~~~K~f~V~G~~~~~~~~~~~~kf~Kevra~~e~~AiE~vYS~~gsrhkvkR~~I~I~~V~Ei~pedv~d~~vk~L~~~~   81 (85)
T COG2157           2 PMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTED   81 (85)
T ss_pred             CcceEEEEeeEEEEecCCCcceehhHHhhhcCHHHHHHHHHHHhhhhccccccceeEEEEEecChhhcccHHHHHHhccc
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCc
Q psy10335        150 IRFP  153 (177)
Q Consensus       150 ikFP  153 (177)
                      ++||
T Consensus        82 ~~~~   85 (85)
T COG2157          82 LKFP   85 (85)
T ss_pred             ccCC
Confidence            9998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
3u5e_S	172	The Structure Of The Eukaryotic Ribosome At 3.0 A R		1e-50
3izr_S	178	Localization Of The Large Subunit Ribosomal Protein		1e-44
3izs_S	167	Localization Of The Large Subunit Ribosomal Protein		2e-44
4a18_X	189	T.Thermophila 60s Ribosomal Subunit In Complex With		2e-33
3zf7_S	179	High-resolution Cryo-electron Microscopy Structure		3e-28

>pdb|3U5E|S Chain S, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 172

Iteration: 1
 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 7   LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
            KEY+VIGR+LPTE      L++MRIFA ++++AKSR+WYFL++L K KK++GEIVS+  
Sbjct: 4   FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 67  ISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQI 126
           I+E  PTK+KNFG+W+RYDSRSGTHNMY+E RD+S   AV   Y+DM ARHRAR  SI I
Sbjct: 64  INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 127 IKL-EVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
           +K+ E+ K +  +R  VKQF    ++FPLP R+Q   +   FS +RP T++
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKSTKT--FSYKRPSTFY 172

>pdb|3IZR|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 178

Iteration: 1
 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 109/146 (74%)
Query: 9   EYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLIS 68
           +Y+V+GR LPT  ++   +Y+M+++A +++ AKS+FWYFLR+LKK KKS G+I+++  I 
Sbjct: 8   QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 69  EKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIK 128
           EK+PT IKN+GIWLRY SR+G HNMY+EYRD +++GAV Q Y +M +RHR R   IQIIK
Sbjct: 68  EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 129 LEVVKASACRRPLVKQFHDSRIRFPL 154
              V    C+R   KQFH S I+FPL
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPL 153

>pdb|3IZS|S Chain S, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 167

Iteration: 1
 Score =  175 bits (443), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 109/146 (74%)
Query: 9   EYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLIS 68
           +Y+V+GR LPT  ++   +Y+M+++A +++ AKS+FWYFLR+LKK KKS G+I+++  I 
Sbjct: 8   QYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIF 67
Query: 69  EKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIK 128
           EK+PT IKN+GIWLRY SR+G HNMY+EYRD +++GAV Q Y +M +RHR R   IQIIK
Sbjct: 68  EKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIK 127
Query: 129 LEVVKASACRRPLVKQFHDSRIRFPL 154
              V    C+R   KQFH S I+FPL
Sbjct: 128 TATVHFKLCKRDNTKQFHKSDIKFPL 153

>pdb|4A18|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 189

Iteration: 1
 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/172 (37%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 7   LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
           +++Y V   +LP E+     + +MR+FA D++ AK++FWY +R+L K K+S G I+S+  
Sbjct: 18  VRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNE 77
Query: 67  ISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQI 126
           I EKS   +K +GI L+Y SR+  HNMY+EYRD+S++GAV+Q  +DM   HRA+  +IQI
Sbjct: 78  IYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQI 137
Query: 127 IKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRM---NLFSSRRPKTY 175
           I+   ++    +RP      ++ ++FP+ K I   +      ++ + RP T+
Sbjct: 138 IRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>pdb|3ZF7|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 179

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 97/152 (63%), Gaps = 2/152 (1%)
Query: 7   LKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKL 66
           L+ Y V+GR+ P+EK     +YK  +FAP+ +VAKSRFW  +R+  K K + G+++S K+
Sbjct: 6   LRHYCVVGRETPSEKNPQPTVYKFEVFAPNFVVAKSRFWRMMREKNKVKSTHGDVLSCKV 65
Query: 67  ISEKSPTKIKNFGIWLRYDS-RSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQ 125
           + ++     +N+ + + Y S R G  +M +E+RD+  +GAV+Q Y D+ +RHRAR H+I+
Sbjct: 66  VKDRK-LAARNYSVDIAYYSQRCGYTHMVKEFRDVCKAGAVSQAYNDLASRHRARYHNIE 124
Query: 126 IIKLEVVKASACRRPLVKQFHDSRIRFPLPKR 157
           ++ ++ +     RR  V QFH   + FPL +R
Sbjct: 125 VLGVKSIPNHEVRRLNVAQFHPHNLSFPLLQR 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	9e-86
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	3e-84
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	3e-83
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S Length = 172

 Score =  248 bits (635), Expect = 9e-86
 Identities = 93/173 (53%), Positives = 125/173 (72%), Gaps = 3/173 (1%)

Query: 5   GLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSL 64
              KEY+VIGR+LPTE      L++MRIFA ++++AKSR+WYFL++L K KK++GEIVS+
Sbjct: 2   AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSI 61

Query: 65  KLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSI 124
             I+E  PTK+KNFG+W+RYDSRSGTHNMY+E RD+S   AV   Y+DM ARHRAR  SI
Sbjct: 62  NQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSI 121

Query: 125 QIIKL-EVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNRMNLFSSRRPKTYF 176
            I+K+ E+ K +  +R  VKQF    ++FPLP R+Q       FS +RP T++
Sbjct: 122 HILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQ--KSTKTFSYKRPSTFY 172

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X Length = 189

 Score =  243 bits (620), Expect = 3e-83
 Identities = 65/175 (37%), Positives = 109/175 (62%), Gaps = 3/175 (1%)

Query: 4   KGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVS 63
           +  +++Y V   +LP E+     + +MR+FA D++ AK++FWY +R+L K K+S G I+S
Sbjct: 15  QMKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILS 74

Query: 64  LKLISEKSPTKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHS 123
           +  I EKS   +K +GI L+Y SR+  HNMY+EYRD+S++GAV+Q  +DM   HRA+  +
Sbjct: 75  VNEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDT 134

Query: 124 IQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVNR---MNLFSSRRPKTY 175
           IQII+   ++    +RP      ++ ++FP+ K I   +      ++ + RP T+
Sbjct: 135 IQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A Length = 78

 Score = 54.6 bits (131), Expect = 7e-11
 Identities = 13/71 (18%), Positives = 29/71 (40%)

Query: 74  KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVK 133
           K K F +  ++          +E   +       + Y + G++HR     ++I ++E + 
Sbjct: 4   KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEIS 63

Query: 134 ASACRRPLVKQ 144
               + P+VK 
Sbjct: 64  PEEVQDPVVKA 74

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 35/209 (16%), Positives = 68/209 (32%), Gaps = 46/209 (22%)

Query: 2   KAKGLLKEY-EVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGE 60
           + K LL +Y +   + LP E     P  ++ I A       +  W   + +   K +T  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGLAT-WDNWKHVNCDKLTTII 359

Query: 61  IVSLKLISEKSPTKIK----NFGIWLRYDSR--SGTHNMY---REYRDLSVSGAVTQCY- 110
             SL ++    P + +       +     +   +   ++        D  V   V + + 
Sbjct: 360 ESSLNVL---EPAEYRKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHK 413

Query: 111 RDMGARHRARA----HSIQI-IKLEVVKASACRRPLVKQF-----HDSRIRFPLP----- 155
             +  +    +     SI + +K+++    A  R +V  +      DS    P       
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 156 --------KRIQHVNRMNLFSSRRPKTYF 176
                   K I+H  RM LF       + 
Sbjct: 474 YSHIGHHLKNIEHPERMTLF----RMVFL 498

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
3u5e_S	172	L18A, 60S ribosomal protein L20-A; translation, ri	100.0
4a18_X	189	RPL18A, 60S ribosomal protein L36; ribosome, eukar	100.0
3iz5_S	178	60S ribosomal protein L18A (L18AE); eukaryotic rib	100.0
3j21_l	77	50S ribosomal protein LX; archaea, archaeal, KINK-	100.0
4adx_G	78	RPLX; ribosome, protein synthesis; 6.60A {Methanot	100.0

>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S

Probab=100.00  E-value=2.6e-101  Score=629.59  Aligned_cols=170  Identities=54%  Similarity=0.970  Sum_probs=167.7

Q ss_pred             cceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEEE
Q psy10335          5 GLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLRY   84 (177)
Q Consensus         5 ~~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlrY   84 (177)
                      |+|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+|||||+||||+|++|+|++|++||||||||||
T Consensus         2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY   81 (172)
T 3u5e_S            2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY   81 (172)
T ss_dssp             CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred             CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEe-cCCcccChhhhhhhcCCCcCcCccccccccC
Q psy10335         85 DSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVV-KASACRRPLVKQFHDSRIRFPLPKRIQHVNR  163 (177)
Q Consensus        85 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI-~~~~~rrp~vkQf~~~kikFPl~~r~~~~~~  163 (177)
                      |||||||||||||||||++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++|+||||||+++.  
T Consensus        82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~--  159 (172)
T 3u5e_S           82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS--  159 (172)
T ss_dssp             ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred             cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence            999999999999999999999999999999999999999999999999 89999999999999999999999999985  


Q ss_pred             CCceeccCCcccC
Q psy10335        164 MNLFSSRRPKTYF  176 (177)
Q Consensus       164 ~~~F~~~rP~t~~  176 (177)
                      +++|+++||+|||
T Consensus       160 ~~~F~~~rP~t~~  172 (172)
T 3u5e_S          160 TKTFSYKRPSTFY  172 (172)
T ss_dssp             SSSCBSSCCCCCC
T ss_pred             CCceeccCCCCCC
Confidence            4899999999997

>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X

Probab=100.00  E-value=9.2e-100  Score=627.52  Aligned_cols=172  Identities=38%  Similarity=0.720  Sum_probs=168.5

Q ss_pred             ccceeEEEEEeecCCCCCCCCCCcEEEEeecCCceEEehhhHHHHHHhhhcccccccEEEEEEeccCCCceeeeeeEEEE
Q psy10335          4 KGLLKEYEVIGRKLPTEKEKITPLYKMRIFAPDDIVAKSRFWYFLRQLKKFKKSTGEIVSLKLISEKSPTKIKNFGIWLR   83 (177)
Q Consensus         4 ~~~l~eY~Vvgr~lPt~k~p~P~ly~m~iFA~n~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VkNfgIwlr   83 (177)
                      +|.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+|||||+||||+|++|+|++|++|||||||||
T Consensus        15 ~~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlr   94 (189)
T 4a18_X           15 QMKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLK   94 (189)
T ss_dssp             SCCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEECCSCTTSCEEEEEEEE
T ss_pred             ccceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEccCCCceeEEeeEEEE
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhcCCCcCcCcccccccc-
Q psy10335         84 YDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHDSRIRFPLPKRIQHVN-  162 (177)
Q Consensus        84 Y~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~~kikFPl~~r~~~~~-  162 (177)
                      ||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+||||++|+||||||+++.+ 
T Consensus        95 YdSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~skikFPl~hrv~~~~~  174 (189)
T 4a18_X           95 YQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSE  174 (189)
T ss_dssp             EECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCSCCEEECCCCCCCCSS
T ss_pred             EcccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhccCCccccceeeccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999854 


Q ss_pred             --CCCceeccCCccc
Q psy10335        163 --RMNLFSSRRPKTY  175 (177)
Q Consensus       163 --~~~~F~~~rP~t~  175 (177)
                        ++++|+++||+||
T Consensus       175 ~~~~~~F~~~rP~t~  189 (189)
T 4a18_X          175 KKYRTVYKATRPTTF  189 (189)
T ss_dssp             GGGCCSSCSSCCCCC
T ss_pred             ccccceeeccCCCCC
Confidence              4789999999997

>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=4.6e-37  Score=222.57  Aligned_cols=74  Identities=18%  Similarity=0.406  Sum_probs=72.4

Q ss_pred             eeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335         74 KIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD  147 (177)
Q Consensus        74 ~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~  147 (177)
                      .|||||||++|+||+|+|||||||||++++|||+|||+||||||++|+++|||++|+||+++||+||+|+||+.
T Consensus         2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~   75 (77)
T 3j21_l            2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL   75 (77)
T ss_dssp             CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred             ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999973

>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A

Probab=100.00  E-value=1.7e-34  Score=209.53  Aligned_cols=75  Identities=17%  Similarity=0.322  Sum_probs=73.0

Q ss_pred             ceeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335         73 TKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD  147 (177)
Q Consensus        73 ~~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~  147 (177)
                      ..|||||||++|+|++|+|||||||||++++|||++||+||||||++++++|+|++|+||+++||+||.|+||+.
T Consensus         3 ~~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~   77 (78)
T 4adx_G            3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_pred             ceeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence            369999999999999999999999999999999999999999999999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d2jxta1	78	d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Met	5e-27

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 78

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 95.2 bits (237), Expect = 5e-27
 Identities = 13/73 (17%), Positives = 29/73 (39%)

Query: 73  TKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVV 132
            K K F +  ++          +E   +       + Y + G++HR     ++I ++E +
Sbjct: 3   MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEI 62

Query: 133 KASACRRPLVKQF 145
                + P+VK  
Sbjct: 63  SPEEVQDPVVKAL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d2jxta1	78	Ribosomal protein LX, RplX {Methanobacterium therm	99.97

>d2jxta1 d.355.1.1 (A:1-78) Ribosomal protein LX, RplX {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: RplX-like
superfamily: RplX-like
family: RplX-like
domain: Ribosomal protein LX, RplX
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=2.2e-32  Score=196.84  Aligned_cols=75  Identities=17%  Similarity=0.322  Sum_probs=73.4

Q ss_pred             ceeeeeeEEEEEecCCccccceeEeeccChhhHHHHHHHHhcccccccCCceeEEEeEEecCCcccChhhhhhhc
Q psy10335         73 TKIKNFGIWLRYDSRSGTHNMYREYRDLSVSGAVTQCYRDMGARHRARAHSIQIIKLEVVKASACRRPLVKQFHD  147 (177)
Q Consensus        73 ~~VkNfgIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~~~rrp~vkQf~~  147 (177)
                      ..|||||||++|.|++|+|||||||||++++||+++||+||||||++++++|+|++|+||+++||++|+|+||++
T Consensus         3 m~vK~y~V~G~~~~~~~~q~f~ke~ra~~~~~A~e~~Ys~~gSrHr~kr~~I~I~~V~eI~~~e~~~p~vkqll~   77 (78)
T d2jxta1           3 MKTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ   77 (78)
T ss_dssp             CSCEEEEEEEEEEETTEEEEEEEEEEESSHHHHHHHHHHHHHHHTCCCGGGEEEEEEEEECGGGCCCHHHHHHHH
T ss_pred             ceEEEEEEEEEEEcCCCccceEEEEecCCHHHHHHHHHHHHhhhcCCCccceEEEEEEEEChHHcCCHHHHHHhh
Confidence            579999999999999999999999999999999999999999999999999999999999999999999999985