Psyllid ID: psy10341

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
MWTLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDAPDTEMSWGLLQP
ccccccccccccccHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccc
ccccccccHcHHHHHHHHHHHHHHHHcccEEEEEEccccccccEEEcccccHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccc
mwtlshdrlgqfslttkghgecVKFVRDLNVpllvlgggglgqfslttkghgecvKFVRDlnvpllvlggggytlrnVARCWTYETSLLVNEeisndipdslykdffqpdynlhpefvhkhdnanSKQYLELITKTVYdnlkmvafspsvqmqdMIGDVFTRDIGAvldemdpdiknpqleedkrvdpanefydgdndqdapdtemswgllqp
mwtlshdrlgqfslttkghgeCVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVLDEMDPDiknpqleedkrvdpANEFYDGDNDQDAPDTEMSWGLLQP
MWTLSHDRLGQFSLTTKGHGECVKFVRDLNVPllvlgggglgQFSLTTKGHGECVKFVRDlnvpllvlggggYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDAPDTEMSWGLLQP
********LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVLD********************************************
*******RLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVH*H**ANSKQYLELITKTVYDNLKMVAFSPSVQMQDM**********************************************************
MWTLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDAPDTEMSWGLLQP
***LSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSV***************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWTLSHDRLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQDAPDTEMSWGLLQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
Q6P6W3428 Histone deacetylase 3 OS= yes N/A 0.755 0.376 0.527 1e-44
O15379428 Histone deacetylase 3 OS= yes N/A 0.755 0.376 0.527 1e-44
O88895424 Histone deacetylase 3 OS= yes N/A 0.755 0.379 0.527 1e-44
P56520428 Histone deacetylase 3 OS= yes N/A 0.755 0.376 0.527 1e-44
Q803C3428 Histone deacetylase 3 OS= yes N/A 0.755 0.376 0.527 3e-44
Q5RB76428 Histone deacetylase 3 OS= yes N/A 0.755 0.376 0.521 5e-44
Q4SFA0428 Histone deacetylase 3 OS= N/A N/A 0.755 0.376 0.527 6e-44
Q28DV3428 Histone deacetylase 3 OS= yes N/A 0.755 0.376 0.509 1e-43
Q6IRL9428 Histone deacetylase 3 OS= N/A N/A 0.755 0.376 0.509 9e-43
Q8H0W2426 Histone deacetylase 9 OS= yes N/A 0.741 0.370 0.453 3e-35
>sp|Q6P6W3|HDAC3_RAT Histone deacetylase 3 OS=Rattus norvegicus GN=Hdac3 PE=1 SV=1 Back     alignment and function desciption
 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 119/165 (72%), Gaps = 4/165 (2%)

Query: 36  LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
           LG   LG F+L+ +GHGECV++V+  N+PLLVLGGGGYT+RNVARCWTYETSLLV E IS
Sbjct: 261 LGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAIS 320

Query: 96  NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
            ++P S Y ++F PD+ LHP+   + +N NS+QYL+ I +T+++NLKM+  +PSVQ+ D+
Sbjct: 321 EELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQIHDV 380

Query: 156 IGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQD 200
             D+ T D     DE D + + P+ E   R +  NEFYDGD+D D
Sbjct: 381 PADLLTYD---RTDEADAEERGPE-ENYSRPEAPNEFYDGDHDND 421
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4), and some other non-histone substrates. Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Required to repress transcription of the POU1F1 transcription factor. Acts as a molecular chaperone for shuttling phosphorylated NR2C1 to PML bodies for sumoylation.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|O15379|HDAC3_HUMAN Histone deacetylase 3 OS=Homo sapiens GN=HDAC3 PE=1 SV=2 Back     alignment and function description
>sp|O88895|HDAC3_MOUSE Histone deacetylase 3 OS=Mus musculus GN=Hdac3 PE=1 SV=1 Back     alignment and function description
>sp|P56520|HDAC3_CHICK Histone deacetylase 3 OS=Gallus gallus GN=HDAC3 PE=2 SV=1 Back     alignment and function description
>sp|Q803C3|HDAC3_DANRE Histone deacetylase 3 OS=Danio rerio GN=hdac3 PE=2 SV=1 Back     alignment and function description
>sp|Q5RB76|HDAC3_PONAB Histone deacetylase 3 OS=Pongo abelii GN=HDAC3 PE=2 SV=1 Back     alignment and function description
>sp|Q4SFA0|HDAC3_TETNG Histone deacetylase 3 OS=Tetraodon nigroviridis GN=hdac3 PE=3 SV=1 Back     alignment and function description
>sp|Q28DV3|HDAC3_XENTR Histone deacetylase 3 OS=Xenopus tropicalis GN=hdac3 PE=2 SV=1 Back     alignment and function description
>sp|Q6IRL9|HDAC3_XENLA Histone deacetylase 3 OS=Xenopus laevis GN=hdac3 PE=2 SV=2 Back     alignment and function description
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
193693028 433 PREDICTED: histone deacetylase 3-like [A 0.859 0.422 0.595 2e-57
195036690 436 GH18996 [Drosophila grimshawi] gi|193893 0.788 0.385 0.639 2e-55
195391976 436 GJ24563 [Drosophila virilis] gi|19415272 0.788 0.385 0.639 4e-55
242011686 428 histone deacetylase, putative [Pediculus 0.779 0.387 0.617 1e-54
195109690 436 GI24497 [Drosophila mojavensis] gi|19391 0.788 0.385 0.627 2e-54
312385914 374 hypothetical protein AND_00159 [Anophele 0.798 0.454 0.611 3e-54
194741720 438 GF17707 [Drosophila ananassae] gi|190626 0.807 0.392 0.618 3e-54
157128411 431 histone deacetylase [Aedes aegypti] gi|1 0.793 0.392 0.623 3e-54
24644244 438 histone deacetylase 3 [Drosophila melano 0.807 0.392 0.624 4e-54
3982757 438 histone deacetylase dHDAC3 [Drosophila m 0.807 0.392 0.624 4e-54
>gi|193693028|ref|XP_001951271.1| PREDICTED: histone deacetylase 3-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 115/193 (59%), Positives = 142/193 (73%), Gaps = 10/193 (5%)

Query: 23  VKFVRDLNVPLLV--------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYT 74
           ++ V DL  P  +        L G  LG F+L+TKGHGECVKF++DLNVPLL +GGGGYT
Sbjct: 241 IQHVMDLYQPTAIVLQCGADSLNGDRLGCFNLSTKGHGECVKFIKDLNVPLLTVGGGGYT 300

Query: 75  LRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELIT 134
           LRNVARCWTYETSLL++EEISN IP+  Y+D+F PD+ LHPE V + +NANSKQYLELI 
Sbjct: 301 LRNVARCWTYETSLLIDEEISNTIPEHEYRDYFAPDFLLHPEVVTRQENANSKQYLELIV 360

Query: 135 KTVYDNLKMVAFSPSVQMQDMIGDVF-TRDIGAV-LDEMDPDIKNPQLEEDKRVDPANEF 192
           K  YDNLKMV  SPSVQ+Q++ GD   T +  A+ LDE+DPD++  Q+E D+RVD  NEF
Sbjct: 361 KHTYDNLKMVQHSPSVQIQNVPGDALPTEEFNAIALDEVDPDVRQSQVELDRRVDAPNEF 420

Query: 193 YDGDNDQDAPDTE 205
           Y  D DQD  +T 
Sbjct: 421 YQDDKDQDFDETR 433

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195036690|ref|XP_001989801.1| GH18996 [Drosophila grimshawi] gi|193893997|gb|EDV92863.1| GH18996 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195391976|ref|XP_002054635.1| GJ24563 [Drosophila virilis] gi|194152721|gb|EDW68155.1| GJ24563 [Drosophila virilis] Back     alignment and taxonomy information
>gi|242011686|ref|XP_002426578.1| histone deacetylase, putative [Pediculus humanus corporis] gi|212510718|gb|EEB13840.1| histone deacetylase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195109690|ref|XP_001999416.1| GI24497 [Drosophila mojavensis] gi|193916010|gb|EDW14877.1| GI24497 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|312385914|gb|EFR30302.1| hypothetical protein AND_00159 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|194741720|ref|XP_001953335.1| GF17707 [Drosophila ananassae] gi|190626394|gb|EDV41918.1| GF17707 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|157128411|ref|XP_001655108.1| histone deacetylase [Aedes aegypti] gi|108872597|gb|EAT36822.1| AAEL011117-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|24644244|ref|NP_651978.2| histone deacetylase 3 [Drosophila melanogaster] gi|7296744|gb|AAF52023.1| histone deacetylase 3 [Drosophila melanogaster] gi|16769300|gb|AAL28869.1| LD23745p [Drosophila melanogaster] gi|220944926|gb|ACL85006.1| Hdac3-PA [synthetic construct] gi|220954688|gb|ACL89887.1| Hdac3-PA [synthetic construct] gi|384875342|gb|AFI26263.1| histone deacetylase 3 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|3982757|gb|AAC83649.1| histone deacetylase dHDAC3 [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
FB|FBgn0025825438 Hdac3 "Histone deacetylase 3" 0.769 0.374 0.569 1.6e-45
UNIPROTKB|F1N0W0163 HDAC3 "Uncharacterized protein 0.708 0.926 0.455 5.7e-36
UNIPROTKB|F1NH59428 HDAC3 "Histone deacetylase" [G 0.746 0.371 0.457 2.4e-35
UNIPROTKB|P56520428 HDAC3 "Histone deacetylase 3" 0.746 0.371 0.457 2.4e-35
ZFIN|ZDB-GENE-040426-847428 hdac3 "histone deacetylase 3" 0.746 0.371 0.463 2.4e-35
UNIPROTKB|E2R792428 HDAC3 "Histone deacetylase" [C 0.746 0.371 0.457 3.1e-35
UNIPROTKB|O15379428 HDAC3 "Histone deacetylase 3" 0.746 0.371 0.457 3.1e-35
UNIPROTKB|F2Z4Z6428 HDAC3 "Histone deacetylase" [S 0.746 0.371 0.457 3.1e-35
RGD|619977428 Hdac3 "histone deacetylase 3" 0.746 0.371 0.457 3.1e-35
UNIPROTKB|D4AEB0428 Hdac3 "Histone deacetylase" [R 0.746 0.371 0.457 3.1e-35
FB|FBgn0025825 Hdac3 "Histone deacetylase 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 94/165 (56%), Positives = 114/165 (69%)

Query:    44 FSLTTKGHGECVKFVRDXXXXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLY 103
             FSL+TKGHGECVKFV++            YTLRNVARCWT+ETSLLV+++I ND+P + Y
Sbjct:   274 FSLSTKGHGECVKFVKELNVPTLVVGGGGYTLRNVARCWTHETSLLVDQDIENDLPATEY 333

Query:   104 KDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDMIGDVFTRD 163
              DFF PD+ LHPE   + DNANSKQYLELI K VY+NLKM   SPSVQM     DV   +
Sbjct:   334 YDFFAPDFTLHPEINSRQDNANSKQYLELIVKHVYENLKMCQHSPSVQMVQTPPDVDLEE 393

Query:   164 IGAVLDEM-DPDIKNPQLEEDKRVDPANEFYDGDNDQDAPDTEMS 207
             + +  +E  DPD++    +EDK VD  NEFYDGD DQD PD+  S
Sbjct:   394 LRSNREEASDPDVRISVADEDKLVDAKNEFYDGDQDQDKPDSAES 438
GO:0004407 "histone deacetylase activity" evidence=ISS;IDA;NAS
GO:0016575 "histone deacetylation" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043066 "negative regulation of apoptotic process" evidence=IMP
GO:0006342 "chromatin silencing" evidence=IGI;IMP
UNIPROTKB|F1N0W0 HDAC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NH59 HDAC3 "Histone deacetylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P56520 HDAC3 "Histone deacetylase 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-847 hdac3 "histone deacetylase 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R792 HDAC3 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O15379 HDAC3 "Histone deacetylase 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4Z6 HDAC3 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|619977 Hdac3 "histone deacetylase 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4AEB0 Hdac3 "Histone deacetylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O15379HDAC3_HUMAN3, ., 5, ., 1, ., 9, 80.52720.75580.3761yesN/A
Q28DV3HDAC3_XENTR3, ., 5, ., 1, ., 9, 80.50900.75580.3761yesN/A
Q803C3HDAC3_DANRE3, ., 5, ., 1, ., 9, 80.52720.75580.3761yesN/A
O88895HDAC3_MOUSE3, ., 5, ., 1, ., 9, 80.52720.75580.3797yesN/A
P56520HDAC3_CHICK3, ., 5, ., 1, ., 9, 80.52720.75580.3761yesN/A
Q5RB76HDAC3_PONAB3, ., 5, ., 1, ., 9, 80.52120.75580.3761yesN/A
Q6P6W3HDAC3_RAT3, ., 5, ., 1, ., 9, 80.52720.75580.3761yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.824
3rd Layer3.5.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 8e-63
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 1e-39
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 6e-38
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 1e-32
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 2e-31
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 3e-28
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 3e-28
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 5e-24
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 3e-17
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 7e-11
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 2e-10
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 8e-10
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 2e-09
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 9e-09
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information 
 Score =  199 bits (507), Expect = 8e-63
 Identities = 77/123 (62%), Positives = 100/123 (81%)

Query: 36  LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEIS 95
           LG   LG F+L+ KGHGECV+FV+  N+PLLVLGGGGYT+RNVARCWTYETSLLV+EEIS
Sbjct: 259 LGCDRLGCFNLSIKGHGECVEFVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVDEEIS 318

Query: 96  NDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQMQDM 155
           N++P + Y ++F PD+ LHP+   + +N NSKQYL+ I +TV++NLKM+  +PSVQMQD+
Sbjct: 319 NELPYNEYFEYFAPDFTLHPDVSTRIENQNSKQYLDQIRQTVFENLKMLNHAPSVQMQDV 378

Query: 156 IGD 158
             D
Sbjct: 379 PPD 381

HDAC3 is a Zn-dependent class I histone deacetylase that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. In order to target specific chromatin regions, HDAC3 can interact with DNA-binding proteins (transcriptional factors) either directly or after forming complexes with a number of other proteins, as observed for the SMPT/N-CoR complex which recruits human HDAC3 to specific chromatin loci and activates deacetylation. Human HDAC3 is also involved in deacetylation of non-histone substrates such as RelA, SPY and p53 factors. This protein can also down-regulate p53 function and subsequently modulate cell growth and apoptosis. This gene is therefore regarded as a potential tumor suppressor gene. HDAC3 plays a role in various physiological processes, including subcellular protein localization, cell cycle progression, cell differentiation, apoptosis and survival. HDAC3 has been found to be overexpressed in some tumors including leukemia, lung carcinoma, colon cancer and maxillary carcinoma. Thus, inhibitors precisely targeting HDAC3 (in some cases together with retinoic acid or hyperthermia) could be a therapeutic drug option. Length = 381
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
KOG1342|consensus425 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 99.91
KOG1342|consensus425 99.63
COG0123340 AcuC Deacetylases, including yeast histone deacety 99.27
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 99.12
PTZ00063436 histone deacetylase; Provisional 98.75
PTZ00346429 histone deacetylase; Provisional 98.7
KOG1344|consensus324 95.64
COG0123340 AcuC Deacetylases, including yeast histone deacety 94.89
KOG1343|consensus797 94.66
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 84.27
COG0420 390 SbcD DNA repair exonuclease [DNA replication, reco 82.42
cd00840223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 80.88
>KOG1342|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.1e-55  Score=402.44  Aligned_cols=186  Identities=48%  Similarity=0.848  Sum_probs=164.6

Q ss_pred             cccCCcc-ch---------HHHHHHH-HhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341         11 QFSLTTK-GH---------GECVKFV-RDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG   72 (213)
Q Consensus        11 ~fNl~~~-g~---------~~~v~~v-k~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG   72 (213)
                      +.|+|++ |.         ..++..+ ..|.|..|+       |+||||||||||++||++||+||+||++|+|+|||||
T Consensus       222 avNVPL~dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGG  301 (425)
T KOG1342|consen  222 AVNVPLKDGIDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGG  301 (425)
T ss_pred             EEccchhccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCc
Confidence            5699999 77         4455555 445555443       9999999999999999999999999999999999999


Q ss_pred             CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCCCcccc
Q psy10341         73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQM  152 (213)
Q Consensus        73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~aPsvqm  152 (213)
                      ||++||||||||||++++++++|++||+|+||+||+|||+|++. +++++|+|+++||++|+..+++||+++++||||||
T Consensus       302 YT~rNVARcWtYeT~v~~~~~~~~elP~n~y~~yF~PDy~l~~~-~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm  380 (425)
T KOG1342|consen  302 YTLRNVARCWTYETGVLLDQELPNELPYNDYFEYFGPDYKLHID-PSNMENFNTPHYLESIRNEILENLRMLQHAPSVQM  380 (425)
T ss_pred             cchhhhHHHHHHHhhhhcCccccccCCCccchhhhCCCcccccC-ccchhcccCHHHHHHHHHHHHHHHHhccCCCcccc
Confidence            99999999999999999999999999999999999999999999 69999999999999999999999999999999999


Q ss_pred             cccCCCcccCCCCCccCCCCCCCCCCcccccccCCCCCCCCCCCCCC
Q psy10341        153 QDMIGDVFTRDIGAVLDEMDPDIKNPQLEEDKRVDPANEFYDGDNDQ  199 (213)
Q Consensus       153 ~~~p~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~~~~ef~~~~~~~  199 (213)
                      |.+|+....+.  ..+++++++.|.++...|..++..+|||++++++
T Consensus       381 ~~~p~~~~d~~--~~~~~~~~d~~~~~~~~~~~~~~~~e~~d~~~~~  425 (425)
T KOG1342|consen  381 QMIPNPDFDED--MVEDEKDPDLRSSQESEDKDVQDDNEFYDGENEG  425 (425)
T ss_pred             cccCCCccchh--hhhhhhCcccccchhhhhcccccchhhcccccCC
Confidence            99997322221  1145677889999999999999999999998763

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>KOG1342|consensus Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>KOG1344|consensus Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1343|consensus Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 4e-29
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 3e-17
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 5e-09
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 5e-09
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 5e-09
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 5e-09
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 5e-09
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 5e-09
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 5e-09
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 5e-09
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 5e-09
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 6e-09
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 6e-09
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 1e-08
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 89/149 (59%), Gaps = 32/149 (21%)
Query: 3   TLSHDRLGQFSLTTKGHGECVKFVRDLNVPXXXXXXXXXXQFSLTTKGHGECVKFVRDXX 62
           +L  DRLG F+L+ +GHGECV++V+  N+P             L   G G          
Sbjct: 260 SLGCDRLGCFNLSIRGHGECVEYVKSFNIPL------------LVLGGGG---------- 297
Query: 63  XXXXXXXXXXYTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHD 122
                     YT+RNVARCWTYETSLLV E IS ++P S Y ++F PD+ LHP+   + +
Sbjct: 298 ----------YTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIE 347
Query: 123 NANSKQYLELITKTVYDNLKMVAFSPSVQ 151
           N NS+QYL+ I +T+++NLKM+  +PSVQ
Sbjct: 348 NQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 8e-50
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 8e-48
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 3e-42
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 9e-36
4dgw_C231 PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A 6e-05
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
 Score =  165 bits (419), Expect = 8e-50
 Identities = 66/111 (59%), Positives = 90/111 (81%)

Query: 41  LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPD 100
           LG F+L+ +GHGECV++V+  N+PLLVLGGGGYT+RNVARCWTYETSLLV E IS ++P 
Sbjct: 266 LGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELPY 325

Query: 101 SLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQ 151
           S Y ++F PD+ LHP+   + +N NS+QYL+ I +T+++NLKM+  +PSVQ
Sbjct: 326 SEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 231 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 99.57
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 99.55
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 99.35
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 99.1
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 99.07
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 98.58
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 98.56
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 98.54
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 98.5
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 97.25
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 96.96
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 95.89
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 95.72
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.1e-37  Score=282.23  Aligned_cols=141  Identities=50%  Similarity=0.949  Sum_probs=124.6

Q ss_pred             cccCCcc-ch---------HHHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341         11 QFSLTTK-GH---------GECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG   72 (213)
Q Consensus        11 ~fNl~~~-g~---------~~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG   72 (213)
                      .+|++++ |.         .+++ ..++.|.|.+|+       +.|||||+||||.+||++|+++++++++|++++||||
T Consensus       218 ~vNvPL~~G~~D~~yl~~~~~~l~p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGG  297 (376)
T 4a69_A          218 CLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGG  297 (376)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHHHHHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred             eEeeecCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            5788887 54         2233 346788888866       8899999999999999999999999999999999999


Q ss_pred             CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccccCCCccc
Q psy10341         73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMVAFSPSVQ  151 (213)
Q Consensus        73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~~~aPsvq  151 (213)
                      |++++||||||++|++++|++||++||+++|+++|+|+|+||+..+++|+|+|+++||++|+++|++|||++++|||||
T Consensus       298 Y~~~~var~w~~~~a~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          298 YTVRNVARCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             CSHHHHHHHHHHHHHHHTTCCCCSBCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             CChhHHHHHHHHHHHHhcCCCccCCCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999999999999999999999999877899999999999999999999999999999998
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 3e-32
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 1e-19
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-11
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-32
 Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 41  LGQFSLTTKGHGECVKFVRDLNVPLLVLGGGGYTLRNVARCWTYETSLLVNEEISNDIPD 100
           +  F++T  G G+C+K++    +  L+LGGGGY L N ARCWTY T +++ + +S++IPD
Sbjct: 261 MCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD 320

Query: 101 SLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV 144
             +   + PDY L         + N    ++ I   +  NLK V
Sbjct: 321 HEFFTAYGPDYVLEIT-PSCRPDRNEPHRIQQILNYIKGNLKHV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 99.97
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 99.67
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 99.23
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 98.66
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 97.37
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 94.34
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=241.66  Aligned_cols=133  Identities=30%  Similarity=0.609  Sum_probs=122.3

Q ss_pred             cccCCcc-chH---------HHH-HHHHhhccceeE-------ecCCCCCCCcCChhhHHHHHHHHHhhCCCEEEecCCC
Q psy10341         11 QFSLTTK-GHG---------ECV-KFVRDLNVPLLV-------LGGGGLGQFSLTTKGHGECVKFVRDLNVPLLVLGGGG   72 (213)
Q Consensus        11 ~fNl~~~-g~~---------~~v-~~vk~~~~p~i~-------L~gD~Lg~fnLs~~g~~~cv~~v~s~~~p~llLGGGG   72 (213)
                      .+|+|++ |.+         +++ ..+++|+|.+|+       +.|||||.||||.+|+++|+++|+++++|++++||||
T Consensus       213 ~~NvPL~~g~~d~~y~~~~~~~i~~~~~~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GG  292 (364)
T d1t64a_         213 SVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGG  292 (364)
T ss_dssp             EEEEEECTTCCHHHHHHHHHHHHHHHHHHHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             eeeeecccccChHHHHHHHHHhhHHHhhcCCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            5788888 542         233 345788888866       8899999999999999999999999999999999999


Q ss_pred             CCCCccchhhhhhhhhhccccCCCCCCCCcccccCCCCCCCCCCCCCcccccCcHHHHHHHHHHHHhhcccc
Q psy10341         73 YTLRNVARCWTYETSLLVNEEISNDIPDSLYKDFFQPDYNLHPEFVHKHDNANSKQYLELITKTVYDNLKMV  144 (213)
Q Consensus        73 Y~~~nvAR~Wt~~t~~~~~~~ip~~iP~~~y~~~y~pdy~L~~~~~~~~~n~N~~~~le~i~~~i~~nl~~~  144 (213)
                      ||+.++|||||++|++++|+++|++||+|+||++|+|+|++++. +++++|+|+++|+++|++.|++|||++
T Consensus       293 Y~~~~~ar~w~~~~~~l~g~~~~~~~P~~~~~~~~~p~~~~~~~-~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         293 YNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEIT-PSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             CSHHHHHHHHHHHHHHHHTCCCCSBCCCCTTGGGGTTTCBSCCC-CCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHcCCCCCccCCCchhhhhcCCCcccccC-cccccccCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999 799999999999999999999999986
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure