Psyllid ID: psy10359

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MKPFVNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDAF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHcccccccccccccEEEcccEEccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEEccHHHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccccccccEccEEEcccEEEEccccccccccccEccEccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHcccEEcccEEcccEEEEEEEEEEEEEEEEHHHHHHHcccEEcccEEcccEEEEEEEEEEEEEEEEccccccc
Coil and Loop (DISEMBL)
mkpfvnkktCAFAAIVLTVLLVTVTanekvakgpkvtDIVWFQIQIgevnvgkieiglfgktvpRTVQNFIELAkrpegqgykgskfHRVIKDFMIqggdytkgdgtggasiygdkfedenfklshygsgwlsmanagkdtngsqffittkktpwldgrhvvfgkvitggdivkkiessetdgrdrpvqgvtivdcghtpveepfsDVVKKIEssetdgrdrpvqgvtivdcgytpveepfsvekddaf
Flexible Loop (DISEMBL)
MKPFVNKKTCAFAAIVLTVLLVTVTanekvakgpkvtdiVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIElakrpegqgykgskfHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITtkktpwldgrhvvfgkvitggdivkkiessetdgrdrpvQGVTivdcghtpveepfsdvVKKIessetdgrdrpvqgvtivdcgytpveepfsvekddaf
Low Complexity Region (SEG)
MKPFVNKKTCAFAAIvltvllvtvtANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQggdytkgdgtggASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDAF
Disordered region (IsUnstruct)
****VNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKI***********VQGVTIVDCGHTPV***********************QGVTIVDCGYTPV************
Disordered Region (DISOPRED)
***********FAAIVLTVLLVT**************DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVK****************VTIVDCGHTPVEEPFSD******SSETDGRDRPVQGVTIVDCGYTPVEEPFS*******
Disordered Region (DISEMBL)
MKPFVNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKI*********RPVQGVTIVDCGYTPVEEPFSVEKDDAF
Disordered Region (DISPRO)
MKPFVNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKPFVNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	249	2.2.26 [Sep-21-2011]
P80311	216	Peptidyl-prolyl cis-trans	yes	N/A	0.807	0.930	0.634	1e-70
P52014	201	Peptidyl-prolyl cis-trans	yes	N/A	0.767	0.950	0.637	5e-70
P52013	204	Peptidyl-prolyl cis-trans	no	N/A	0.706	0.862	0.715	1e-69
P24367	207	Peptidyl-prolyl cis-trans	yes	N/A	0.702	0.845	0.691	4e-69
P23284	216	Peptidyl-prolyl cis-trans	yes	N/A	0.807	0.930	0.619	9e-69
P24368	216	Peptidyl-prolyl cis-trans	yes	N/A	0.771	0.888	0.652	1e-68
P24369	216	Peptidyl-prolyl cis-trans	yes	N/A	0.807	0.930	0.619	1e-68
Q26551	213	Peptidyl-prolyl cis-trans	N/A	N/A	0.706	0.826	0.657	7e-63
Q27774	213	Peptidyl-prolyl cis-trans	N/A	N/A	0.763	0.892	0.583	2e-62
Q08E11	212	Peptidyl-prolyl cis-trans	no	N/A	0.807	0.948	0.575	2e-61

>sp|P80311|PPIB_BOVIN Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/205 (63%), Positives = 164/205 (80%), Gaps = 4/205 (1%)

Query: 6   NKKTCAFAAIVLT----VLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGK 61
           N K    AA+V+     +LL   +A ++  KGPKVT  V+F ++IG+ ++G++ IGLFGK
Sbjct: 8   NMKILFVAALVVGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGK 67

Query: 62  TVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN 121
           TVP+TV NF+ LA   +G GYK SKFHRVIKDFMIQGGD+T+GDGTGG SIYG++F DEN
Sbjct: 68  TVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN 127

Query: 122 FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSET 181
           FKL HYG GW+SMANAGKDTNGSQFFITT KT WLDG+HVVFGKV+ G D+V+K+ES++T
Sbjct: 128 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKT 187

Query: 182 DGRDRPVQGVTIVDCGHTPVEEPFS 206
           DGRD+P++ VTI DCG   VE+PF+
Sbjct: 188 DGRDKPLKDVTIADCGKIEVEKPFA 212

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Bos taurus (taxid: 9913)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|P52014|CYP6_CAEEL Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1

 Score =  264 bits (674), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 157/193 (81%), Gaps = 2/193 (1%)

Query: 14  AIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL 73
           A++  VL +   + E  A+GP+VTD V+F ++IG   VGKI IGLFG+ VP+TV+NF+EL
Sbjct: 4   ALLFFVLAILALSAE--ARGPRVTDKVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVEL 61

Query: 74  AKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLS 133
           A+R EG+GY GSKFHRVI++FMIQGGD+T+GDGTGG SIYG++FEDENFKL HYG GWLS
Sbjct: 62  AQRAEGEGYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLS 121

Query: 134 MANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI 193
           MANAG+DTNGSQFFITT KT WLDG+HVVFGK++ G D+V++IE++     DRP++ V I
Sbjct: 122 MANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEATPKGAGDRPIEDVVI 181

Query: 194 VDCGHTPVEEPFS 206
            + GH PVE PF+
Sbjct: 182 ANAGHIPVENPFT 194

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52013|CYP5_CAEEL Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2

 Score =  262 bits (670), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 145/176 (82%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
           AKGPKVTD V+F ++IG   +G+I IGLFGKTVP+T  NFIELAK+P+G+GY GSKFHRV
Sbjct: 22  AKGPKVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRV 81

Query: 91  IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
           I DFMIQGGD+T+GDGTGG SIYG+KF DENFKL HYG+GWLSMANAG DTNGSQFFITT
Sbjct: 82  IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 141

Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
            KTPWLDGRHVVFGK++ G D+V+KIE +E    DRP Q V I   GH  V+ PFS
Sbjct: 142 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFS 197

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24367|PPIB_CHICK Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1

 Score =  261 bits (666), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/175 (69%), Positives = 150/175 (85%)

Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           KGPKVT  V+F +++GE + G++ IGLFGKTVP+TV+NF+ LA   +G G+KGSKFHRVI
Sbjct: 29  KGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVI 88

Query: 92  KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFMIQGGD+T+GDGTGG SIYGD+F DENFKL HYG GW+SMANAGKDTNGSQFFITT 
Sbjct: 89  KDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 148

Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
           KT WLDG+HVVFGKV+ G D+V+K+E+++TD RD+P++ VTI DCG   VE+PF+
Sbjct: 149 KTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVEKPFA 203

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Gallus gallus (taxid: 9031)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P23284|PPIB_HUMAN Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2

 Score =  259 bits (663), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 160/205 (78%), Gaps = 4/205 (1%)

Query: 6   NKKTCAFAAI----VLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGK 61
           N K    AA+    V  +LL   +A ++  KGPKVT  V+F ++IG+ +VG++  GLFGK
Sbjct: 8   NMKVLLAAALIAGSVFFLLLPGPSAADEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGK 67

Query: 62  TVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN 121
           TVP+TV NF+ LA   +G GYK SKFHRVIKDFMIQGGD+T+GDGTGG SIYG++F DEN
Sbjct: 68  TVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN 127

Query: 122 FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSET 181
           FKL HYG GW+SMANAGKDTNGSQFFITT KT WLDG+HVVFGKV+ G ++V+K+ES++T
Sbjct: 128 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKT 187

Query: 182 DGRDRPVQGVTIVDCGHTPVEEPFS 206
           D RD+P++ V I DCG   VE+PF+
Sbjct: 188 DSRDKPLKDVIIADCGKIEVEKPFA 212

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24368|PPIB_RAT Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 155/193 (80%), Gaps = 1/193 (0%)

Query: 14  AIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL 73
           ++V  +L     AN+K  KGPKVT  V+F  QIG+  VG++  GLFGKTVP+TV NF+ L
Sbjct: 21  SVVFLLLPGPSVANDK-KKGPKVTVKVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVAL 79

Query: 74  AKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLS 133
           A   +G GYK SKFHRVIKDFMIQGGD+T+GDGTGG SIYG++F DENFKL HYG GW+S
Sbjct: 80  ATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVS 139

Query: 134 MANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI 193
           MANAGKDTNGSQFFITT KT WLDG+HVVFGKV+ G D+V+K+E+++TD RD+P++ V I
Sbjct: 140 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVII 199

Query: 194 VDCGHTPVEEPFS 206
           VDCG   VE+PF+
Sbjct: 200 VDCGKIEVEKPFA 212

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24369|PPIB_MOUSE Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2

 Score =  259 bits (663), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/205 (61%), Positives = 159/205 (77%), Gaps = 4/205 (1%)

Query: 6   NKKTCAFAAIVLTVLLVTVTANEKVA----KGPKVTDIVWFQIQIGEVNVGKIEIGLFGK 61
           N K    AA+++  ++  +     VA    KGPKVT  V+F +QIG+ +VG++  GLFGK
Sbjct: 8   NMKVLFAAALIVGSVVFLLLPGPSVANDKKKGPKVTVKVYFDLQIGDESVGRVVFGLFGK 67

Query: 62  TVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN 121
           TVP+TV NF+ LA   +G GYK SKFHRVIKDFMIQGGD+T+GDGTGG SIYG++F DEN
Sbjct: 68  TVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDEN 127

Query: 122 FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSET 181
           FKL HYG GW+SMANAGKDTNGSQFFITT KT WLDG+HVVFGKV+ G D+V+K+ES++T
Sbjct: 128 FKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKT 187

Query: 182 DGRDRPVQGVTIVDCGHTPVEEPFS 206
           D RD+P++ V IVD G   VE+PF+
Sbjct: 188 DSRDKPLKDVIIVDSGKIEVEKPFA 212

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q26551|PPIB_SCHMA Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1

 Score =  240 bits (612), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 119/181 (65%), Positives = 138/181 (76%), Gaps = 5/181 (2%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----KRPEGQGYKGS 85
           A GPKVTD V+F I++    + +I IGLFGKTVP+TV+NF +L+     K      YKGS
Sbjct: 25  ANGPKVTDKVFFDIEVDGKPLARIIIGLFGKTVPKTVENFKQLSIGTQLKDGRTASYKGS 84

Query: 86  KFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
            FHRVIK FMIQGGD+T  DGTGG SIYGD+F DENFKL H G+GWLSMANAG DTNGSQ
Sbjct: 85  TFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQ 144

Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
           FFITT KT WLDG+HVVFGKV+ G +IV++IES  TD RDRPV+ + I  CGH PVE PF
Sbjct: 145 FFITTVKTSWLDGKHVVFGKVVEGMNIVRQIESETTDSRDRPVKSIKIASCGHIPVEIPF 204

Query: 206 S 206
           S
Sbjct: 205 S 205

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Schistosoma mansoni (taxid: 6183)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q27774|PPIB_SCHJA Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/197 (58%), Positives = 149/197 (75%), Gaps = 7/197 (3%)

Query: 15  IVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA 74
           +++++L +    +E    GPKVT+ V+F I++ E  +G+I IGLFGKTVP+TV+NF +L+
Sbjct: 11  LLVSILFLGFVLSE--GNGPKVTEKVFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQLS 68

Query: 75  -----KRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGS 129
                K      YKGS FHRVIK FMIQGGD+T  DGTGG SIYG++F DENFKL H G+
Sbjct: 69  IGTTLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGA 128

Query: 130 GWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ 189
           GWLSMANAG +TNG+QFFITT + PWLDG+HVVFGKV+ G  +V++IE+ +TD RDRPV+
Sbjct: 129 GWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVK 188

Query: 190 GVTIVDCGHTPVEEPFS 206
            V I +CGH PV+ PFS
Sbjct: 189 SVKIANCGHIPVDVPFS 205

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Schistosoma japonicum (taxid: 6182)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q08E11|PPIC_BOVIN Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 118/205 (57%), Positives = 147/205 (71%), Gaps = 4/205 (1%)

Query: 1   MKPFVNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFG 60
           ++P +    C    + L+ L+ +  A+    +GP VT  V+F ++IG+ +VG+I IGLFG
Sbjct: 5   LRPLLPLVLC----VGLSALVPSAGASGFRKRGPSVTAKVFFDVRIGDKDVGRIVIGLFG 60

Query: 61  KTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDE 120
           K VP+TV+NF+ LA   +G GYKGSKFHRVIKDFMIQGGD+T+GDGTGG SIYG+ F DE
Sbjct: 61  KVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDE 120

Query: 121 NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSE 180
           NFKL HYG GW+SMANAG DTNGSQFFIT  K  WLDG+HVVFGKV+ G  +V  IE   
Sbjct: 121 NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQA 180

Query: 181 TDGRDRPVQGVTIVDCGHTPVEEPF 205
           TDG DRP    +IV+ G   V+ PF
Sbjct: 181 TDGHDRPFTDCSIVNSGKIDVKTPF 205

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
307211461	203	Peptidyl-prolyl cis-trans isomerase 5 [H	0.771	0.945	0.708	1e-77
345494466	208	PREDICTED: peptidyl-prolyl cis-trans iso	0.763	0.913	0.718	4e-77
322790590	226	hypothetical protein SINV_01262 [Solenop	0.755	0.831	0.723	3e-76
321479105	211	hypothetical protein DAPPUDRAFT_299901 [	0.815	0.962	0.660	1e-75
91083463	209	PREDICTED: similar to CG2852 CG2852-PA [	0.767	0.913	0.704	2e-75
195120109	205	moj29 [Drosophila mojavensis] gi|1939096	0.795	0.965	0.694	7e-75
350404342	206	PREDICTED: peptidyl-prolyl cis-trans iso	0.791	0.956	0.693	8e-75
332025731	200	Peptidyl-prolyl cis-trans isomerase 5 [A	0.795	0.99	0.698	1e-74
340716651	206	PREDICTED: LOW QUALITY PROTEIN: peptidyl	0.791	0.956	0.688	1e-74
195430648	204	GK21428 [Drosophila willistoni] gi|19415	0.738	0.901	0.731	2e-74

>gi|307211461|gb|EFN87567.1| Peptidyl-prolyl cis-trans isomerase 5 [Harpegnathos saltator]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 136/192 (70%), Positives = 162/192 (84%)

Query: 15  IVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA 74
           ++   L+V  + +  VA GPKVTD VWF I+IG+ ++G++EIGLFGKTVP+TVQNF+ELA
Sbjct: 4   LLFLGLVVAASCSSNVANGPKVTDKVWFDIRIGDKDIGRVEIGLFGKTVPKTVQNFVELA 63

Query: 75  KRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSM 134
           K+P+G+GYKGS FHRVIKDFMIQGGD+TKGDGTGG SIYGD+F DENFKL HYG+GWLSM
Sbjct: 64  KKPKGEGYKGSVFHRVIKDFMIQGGDFTKGDGTGGRSIYGDRFADENFKLKHYGAGWLSM 123

Query: 135 ANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV 194
           ANAGKDTNGSQFF+T K+TPWLDGRHVVFGKVI G DI+++IE + TD RDRP + V I 
Sbjct: 124 ANAGKDTNGSQFFVTVKQTPWLDGRHVVFGKVIKGMDIIRQIEQTSTDSRDRPQKDVVIA 183

Query: 195 DCGHTPVEEPFS 206
           DCG   V EPFS
Sbjct: 184 DCGTETVAEPFS 195

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494466|ref|XP_003427298.1| PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Nasonia vitripennis]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 138/192 (71%), Positives = 165/192 (85%), Gaps = 2/192 (1%)

Query: 25  TANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKG 84
           +  E+  KGPKVTD VWF I+IG    G++EIGLFGKTVP+TV+NF+ELAK+P G+GYKG
Sbjct: 19  SGAEEAKKGPKVTDKVWFDIEIGGEKAGRVEIGLFGKTVPKTVKNFVELAKKPAGEGYKG 78

Query: 85  SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
           SKFHRVI+DFMIQGGD+TKGDGTGG SIYGD+FEDENFKL+HYG+GWLSMANAGKDTNGS
Sbjct: 79  SKFHRVIRDFMIQGGDFTKGDGTGGRSIYGDRFEDENFKLNHYGAGWLSMANAGKDTNGS 138

Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEP 204
           QFFITTK+TPWLDGRHVVFGK+I G D+V+K+E+S+TD RD+P + V I DCG   V EP
Sbjct: 139 QFFITTKQTPWLDGRHVVFGKIIKGMDVVRKVEASKTDSRDKPAKDVVIADCGAETVPEP 198

Query: 205 FSDVVKKIESSE 216
           FS  V K +++E
Sbjct: 199 FS--VSKDDATE 208

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790590|gb|EFZ15398.1| hypothetical protein SINV_01262 [Solenopsis invicta]

 Score =  290 bits (743), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/188 (72%), Positives = 158/188 (84%)

Query: 19  VLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE 78
           +L +++ A      GPKVTD VWF I+IG+ + G++EIGLFGKTVP+TV+NF+ELAK PE
Sbjct: 31  LLFLSLAAVSCATNGPKVTDKVWFDIKIGDDDAGRVEIGLFGKTVPKTVKNFVELAKLPE 90

Query: 79  GQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAG 138
           G+GYKGSKFHRVIKDFMIQGGD+TKGDGTGG SIYGD+F DENFKL HYG+GWLSMANAG
Sbjct: 91  GEGYKGSKFHRVIKDFMIQGGDFTKGDGTGGHSIYGDRFADENFKLKHYGAGWLSMANAG 150

Query: 139 KDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           KDTNGSQFFIT K+TPWLDGRHVVFGK+I G DIV+KIE + TD RD+P + V I DCG 
Sbjct: 151 KDTNGSQFFITVKQTPWLDGRHVVFGKIIKGMDIVRKIEQTSTDSRDKPRKDVVIADCGA 210

Query: 199 TPVEEPFS 206
             V EPFS
Sbjct: 211 ETVTEPFS 218

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479105|gb|EFX90061.1| hypothetical protein DAPPUDRAFT_299901 [Daphnia pulex]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/206 (66%), Positives = 164/206 (79%), Gaps = 3/206 (1%)

Query: 1   MKPFVNKKTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFG 60
           M+P     +  FA  ++        A++K  KGPKVTD VWF ++IG   +G+IEIGLFG
Sbjct: 1   MRPLRLTASVLFACFLI---FAVAKADDKTTKGPKVTDKVWFDVEIGGEAIGRIEIGLFG 57

Query: 61  KTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDE 120
           KTVP+TV+NF+ELAK+P G+GYKGS FHR+IKDFMIQGGD+T  DGTGG SIYGD+F DE
Sbjct: 58  KTVPKTVKNFVELAKKPVGEGYKGSIFHRIIKDFMIQGGDFTNKDGTGGRSIYGDRFPDE 117

Query: 121 NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSE 180
           NFKL HYG GWLSMANAGKDTNGSQFF+TTKKT WLDGRHVVFGKVI G D+V+K+ES++
Sbjct: 118 NFKLKHYGIGWLSMANAGKDTNGSQFFLTTKKTSWLDGRHVVFGKVIKGMDVVRKMESTK 177

Query: 181 TDGRDRPVQGVTIVDCGHTPVEEPFS 206
           TDGRD+P + V I DCG   +EEPF+
Sbjct: 178 TDGRDKPAKDVVIADCGAEVIEEPFA 203

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083463|ref|XP_971028.1| PREDICTED: similar to CG2852 CG2852-PA [Tribolium castaneum] gi|270010823|gb|EFA07271.1| hypothetical protein TcasGA2_TC014505 [Tribolium castaneum]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/196 (70%), Positives = 163/196 (83%), Gaps = 5/196 (2%)

Query: 15  IVLTVLLVTVTA-----NEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQN 69
           ++L   ++ + A     ++K  KGPKVTD VWF I IG+  VG+IEIGLFGKTVP+TVQN
Sbjct: 5   LILCCAIIALCAFASCEDDKAKKGPKVTDKVWFDITIGDEAVGRIEIGLFGKTVPKTVQN 64

Query: 70  FIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGS 129
           F ELA++P G+GYKGSKFHRVIKDFMIQGGD+TKGDGTGG SIYG++FEDENFKL HYG+
Sbjct: 65  FKELAQKPVGEGYKGSKFHRVIKDFMIQGGDFTKGDGTGGRSIYGERFEDENFKLKHYGA 124

Query: 130 GWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ 189
           GWLSMANAGKDTNGSQFFITTKKT WLDGRHVVFGKV+ G D+V+KIE+++TD RD+P +
Sbjct: 125 GWLSMANAGKDTNGSQFFITTKKTSWLDGRHVVFGKVLKGMDVVRKIENTKTDNRDKPSK 184

Query: 190 GVTIVDCGHTPVEEPF 205
            V I D G   VEEPF
Sbjct: 185 DVVIADSGAETVEEPF 200

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120109|ref|XP_002004571.1| moj29 [Drosophila mojavensis] gi|193909639|gb|EDW08506.1| moj29 [Drosophila mojavensis]

 Score =  286 bits (731), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 141/203 (69%), Positives = 168/203 (82%), Gaps = 5/203 (2%)

Query: 17  LTVLLVTVTANEKVA---KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL 73
           L + L+ +TA   VA   KGPKVTD V+F I IG    G+IEIGLFGKTV +TV+NF EL
Sbjct: 5   LALCLIAITAGIVVADESKGPKVTDKVFFDITIGGEAAGRIEIGLFGKTVEKTVRNFKEL 64

Query: 74  AKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLS 133
           A++P+G+GYKGSKFHR+IKDFMIQGGD+TKGDGTGG SIYG++FEDENFKL HYG+GWLS
Sbjct: 65  AEKPQGEGYKGSKFHRIIKDFMIQGGDFTKGDGTGGRSIYGERFEDENFKLKHYGAGWLS 124

Query: 134 MANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI 193
           MANAGKDTNGSQFFITTK+T WLDGRHVVFGKV++G D+V+KIESS TD RDRPV+ V I
Sbjct: 125 MANAGKDTNGSQFFITTKQTSWLDGRHVVFGKVLSGMDVVRKIESSATDARDRPVKDVVI 184

Query: 194 VDCGHTPVEEPFSDVVKKIESSE 216
            + G  PV EPF+  V K +++E
Sbjct: 185 ANSGTIPVPEPFA--VSKTDATE 205

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404342|ref|XP_003487075.1| PREDICTED: peptidyl-prolyl cis-trans isomerase 5-like [Bombus impatiens]

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 138/199 (69%), Positives = 158/199 (79%), Gaps = 2/199 (1%)

Query: 8   KTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTV 67
           K+     +VL        A++K  KGPKVTD VWF I I     G+IEIGLFGKTVP+TV
Sbjct: 2   KSLLLVGVVLATFCSNSNADDK--KGPKVTDKVWFDINIDGKYEGRIEIGLFGKTVPKTV 59

Query: 68  QNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHY 127
           QNFI LAK+P+G+GYKGSKFHRVI++FMIQGGD+TKGDGTGG SIYG +FEDENFKL HY
Sbjct: 60  QNFIALAKKPQGEGYKGSKFHRVIREFMIQGGDFTKGDGTGGRSIYGARFEDENFKLKHY 119

Query: 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP 187
           G+GWLSMANAGKDTNGSQFFIT K+TPWLDGRHVVFGK+I G D+V+KIE+  TD RDRP
Sbjct: 120 GAGWLSMANAGKDTNGSQFFITVKQTPWLDGRHVVFGKIIKGMDVVRKIENVNTDTRDRP 179

Query: 188 VQGVTIVDCGHTPVEEPFS 206
            + V I DCG   V EPFS
Sbjct: 180 TKDVVIADCGAEVVAEPFS 198

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025731|gb|EGI65889.1| Peptidyl-prolyl cis-trans isomerase 5 [Acromyrmex echinatior]

 Score =  285 bits (730), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/202 (69%), Positives = 166/202 (82%), Gaps = 4/202 (1%)

Query: 15  IVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA 74
           ++L V L+TV +    + GPKVTD VWF+I+IG+   G++EIGLFGKTVP+TV+NF+ELA
Sbjct: 3   LLLLVGLITVVSC--ASNGPKVTDKVWFEIKIGDEVAGRVEIGLFGKTVPKTVKNFVELA 60

Query: 75  KRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSM 134
           K PEG+GYKGSKFHRVIKDFMIQGGD+TKGDGTGG SIYGD+F DENFKL HYG+GWLSM
Sbjct: 61  KLPEGEGYKGSKFHRVIKDFMIQGGDFTKGDGTGGRSIYGDRFADENFKLKHYGAGWLSM 120

Query: 135 ANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV 194
           ANAGKDTNGSQFFIT K+TPWLDGRHVVFGKVI G DIV+KIE + TD RD+P + V I 
Sbjct: 121 ANAGKDTNGSQFFITVKQTPWLDGRHVVFGKVIKGMDIVRKIEQTSTDSRDKPRKDVVIA 180

Query: 195 DCGHTPVEEPFSDVVKKIESSE 216
           D G   V E FS  V K +++E
Sbjct: 181 DSGAETVTESFS--VSKDDATE 200

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716651|ref|XP_003396809.1| PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase 5-like [Bombus terrestris]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 137/199 (68%), Positives = 160/199 (80%), Gaps = 2/199 (1%)

Query: 8   KTCAFAAIVLTVLLVTVTANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTV 67
           K+     +VL     +  A++K  KGPKVTD VWF I I     G+IEIGLFGKTVP+TV
Sbjct: 2   KSLLLVGVVLATFCSSSIADDK--KGPKVTDKVWFDINIDGKYEGRIEIGLFGKTVPKTV 59

Query: 68  QNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHY 127
           +NFIELAK+P+G+GYKGSKFHRVI++FMIQGGD+TKGDGTGG SIYG +FEDENFKL HY
Sbjct: 60  KNFIELAKKPQGEGYKGSKFHRVIREFMIQGGDFTKGDGTGGRSIYGARFEDENFKLKHY 119

Query: 128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP 187
           G+GWLSMANAGKDTNGSQFFIT K+TPWLDGRHVVFGK+I G D+V+KIE+  TD RDRP
Sbjct: 120 GAGWLSMANAGKDTNGSQFFITVKQTPWLDGRHVVFGKIIKGMDVVRKIENVNTDTRDRP 179

Query: 188 VQGVTIVDCGHTPVEEPFS 206
            + V I DCG   V +PFS
Sbjct: 180 TKDVVIADCGAEVVAQPFS 198

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430648|ref|XP_002063366.1| GK21428 [Drosophila willistoni] gi|194159451|gb|EDW74352.1| GK21428 [Drosophila willistoni]

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 161/186 (86%), Gaps = 2/186 (1%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
           +KGPKVTD V+F I IG  + G+IEIGLFGKTV +TV+NF ELA++P+G+GYKGSKFHR+
Sbjct: 21  SKGPKVTDKVFFDITIGGESAGRIEIGLFGKTVEKTVRNFKELAEKPQGEGYKGSKFHRI 80

Query: 91  IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
           IKDFMIQGGD+TKGDGTGG SIYG++FEDENFKL HYGSGWLSMANAGKDTNGSQFFITT
Sbjct: 81  IKDFMIQGGDFTKGDGTGGRSIYGERFEDENFKLKHYGSGWLSMANAGKDTNGSQFFITT 140

Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVK 210
           K+T WLDGRHVVFGK+++G D+V+KIESS TD RDRPV+ V I + G  PV EPFS  V 
Sbjct: 141 KQTSWLDGRHVVFGKILSGMDVVRKIESSATDARDRPVKDVVIANSGSLPVPEPFS--VS 198

Query: 211 KIESSE 216
           K +++E
Sbjct: 199 KTDATE 204

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	249
FB|FBgn0034753	205	CG2852 [Drosophila melanogaste	0.738	0.897	0.639	7.9e-62
UNIPROTKB|F1NV93	207	PPIB "Peptidyl-prolyl cis-tran	0.722	0.869	0.629	1.2e-60
UNIPROTKB|F1P4M4	223	PPIB "Peptidyl-prolyl cis-tran	0.722	0.807	0.629	1.2e-60
UNIPROTKB|P80311	216	PPIB "Peptidyl-prolyl cis-tran	0.722	0.833	0.635	2.4e-60
ZFIN|ZDB-GENE-040426-1955	216	ppib "peptidylprolyl isomerase	0.738	0.851	0.634	2.4e-60
UNIPROTKB|P24367	207	PPIB "Peptidyl-prolyl cis-tran	0.722	0.869	0.624	8.1e-60
WB|WBGene00000881	204	cyn-5 [Caenorhabditis elegans	0.706	0.862	0.659	2.2e-59
UNIPROTKB|F1PLV2	216	PPIB "Peptidyl-prolyl cis-tran	0.722	0.833	0.624	2.7e-59
RGD|620312	216	Ppib "peptidylprolyl isomerase	0.722	0.833	0.629	3.5e-59
MGI|MGI:97750	216	Ppib "peptidylprolyl isomerase	0.722	0.833	0.629	7.3e-59

FB|FBgn0034753 CG2852 [Drosophila melanogaster (taxid:7227)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 119/186 (63%), Positives = 147/186 (79%)

Query:    31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
             +KGPKVT+ V+F I IG    G+IEIGLFGKTVP+TV+NF ELA +P+G+GYKGSKFHR+
Sbjct:    22 SKGPKVTEKVFFDITIGGEPAGRIEIGLFGKTVPKTVENFKELALKPQGEGYKGSKFHRI 81

Query:    91 IKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
             IKDFMIQ             SIYG++FEDENFKL HYG+GWLSMANAGKDTNGSQFFITT
Sbjct:    82 IKDFMIQGGDFTKGDGTGGRSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITT 141

Query:   151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVK 210
             K+T WLDGRHVVFGK+++G ++V++IE+S TD RDRPV+ V I + G  PV E FS  V 
Sbjct:   142 KQTSWLDGRHVVFGKILSGMNVVRQIENSATDARDRPVKDVVIANSGTLPVSEAFS--VA 199

Query:   211 KIESSE 216
             K ++++
Sbjct:   200 KADATD 205

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0006457 "protein folding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0032504 "multicellular organism reproduction" evidence=IEP

UNIPROTKB|F1NV93 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 114/181 (62%), Positives = 143/181 (79%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             A+E+  KGPKVT  V+F +++GE + G++ IGLFGKTVP+TV+NF+ LA   +G G+KGS
Sbjct:    24 ADER-KKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGS 82

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYGD+F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    83 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQ 142

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KTPWLDG+HVVFGKV+ G D+V+K+E+++TD RD+P++ VTI DCG   VE+PF
Sbjct:   143 FFITTVKTPWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVEKPF 202

Query:   206 S 206
             +
Sbjct:   203 A 203

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|F1P4M4 PPIB "Peptidyl-prolyl cis-trans isomerase" [Gallus gallus (taxid:9031)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 114/181 (62%), Positives = 143/181 (79%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             A+E+  KGPKVT  V+F +++GE + G++ IGLFGKTVP+TV+NF+ LA   +G G+KGS
Sbjct:    40 ADER-KKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGS 98

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYGD+F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    99 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQ 158

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KTPWLDG+HVVFGKV+ G D+V+K+E+++TD RD+P++ VTI DCG   VE+PF
Sbjct:   159 FFITTVKTPWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVEKPF 218

Query:   206 S 206
             +
Sbjct:   219 A 219

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|P80311 PPIB "Peptidyl-prolyl cis-trans isomerase B" [Bos taurus (taxid:9913)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 115/181 (63%), Positives = 142/181 (78%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             A+EK  KGPKVT  V+F ++IG+ ++G++ IGLFGKTVP+TV NF+ LA   +G GYK S
Sbjct:    33 ADEK-KKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 91

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    92 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 151

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KT WLDG+HVVFGKV+ G D+V+K+ES++TDGRD+P++ VTI DCG   VE+PF
Sbjct:   152 FFITTVKTAWLDGKHVVFGKVLEGMDVVRKVESTKTDGRDKPLKDVTIADCGKIEVEKPF 211

Query:   206 S 206
             +
Sbjct:   212 A 212

GO:0042470 "melanosome" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

ZFIN|ZDB-GENE-040426-1955 ppib "peptidylprolyl isomerase B (cyclophilin B)" [Danio rerio (taxid:7955)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 118/186 (63%), Positives = 146/186 (78%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             A+EK  KGPKVT  V+F I+IG+ + G+I IGLFGKTVP+T +NF++LA   +G GYKGS
Sbjct:    33 ADEK-KKGPKVTAKVYFDIKIGDEDAGRIVIGLFGKTVPKTTENFLQLATGEKGFGYKGS 91

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYGD+F DENFKL HYG GWLSMANAGKDTNGSQ
Sbjct:    92 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWLSMANAGKDTNGSQ 151

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT +TPWLDG+HVVFGK++ G D+V+KIE+++TDGRD+P++ V+I D G   VE+PF
Sbjct:   152 FFITTVQTPWLDGKHVVFGKILEGMDVVRKIEATKTDGRDKPLKDVSIHDSGKIDVEKPF 211

Query:   206 SDVVKK 211
             + V K+
Sbjct:   212 A-VAKE 216

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016853 "isomerase activity" evidence=IEA

UNIPROTKB|P24367 PPIB "Peptidyl-prolyl cis-trans isomerase B" [Gallus gallus (taxid:9031)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 113/181 (62%), Positives = 142/181 (78%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             A+E+  KGPKVT  V+F +++GE + G++ IGLFGKTVP+TV+NF+ LA   +G G+KGS
Sbjct:    24 ADER-KKGPKVTAKVFFDLRVGEEDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGS 82

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYGD+F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    83 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQ 142

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KT WLDG+HVVFGKV+ G D+V+K+E+++TD RD+P++ VTI DCG   VE+PF
Sbjct:   143 FFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCGTIEVEKPF 202

Query:   206 S 206
             +
Sbjct:   203 A 203

GO:0006457 "protein folding" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

WB|WBGene00000881 cyn-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 116/176 (65%), Positives = 133/176 (75%)

Query:    31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
             AKGPKVTD V+F ++IG   +G+I IGLFGKTVP+T  NFIELAK+P+G+GY GSKFHRV
Sbjct:    22 AKGPKVTDKVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRV 81

Query:    91 IKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
             I DFMIQ             SIYG+KF DENFKL HYG+GWLSMANAG DTNGSQFFITT
Sbjct:    82 IADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITT 141

Query:   151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
              KTPWLDGRHVVFGK++ G D+V+KIE +E    DRP Q V I   GH  V+ PFS
Sbjct:   142 VKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFS 197

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|F1PLV2 PPIB "Peptidyl-prolyl cis-trans isomerase" [Canis lupus familiaris (taxid:9615)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 113/181 (62%), Positives = 141/181 (77%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             A+EK  KGPKVT  V+F ++IG+ ++G++ IGLFGKTVP+TV NF+ LA   +G GYK S
Sbjct:    33 ADEK-KKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 91

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    92 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 151

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KT WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ VTI DCG   VE+PF
Sbjct:   152 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVTIADCGKIEVEKPF 211

Query:   206 S 206
             +
Sbjct:   212 A 212

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

RGD|620312 Ppib "peptidylprolyl isomerase B" [Rattus norvegicus (taxid:10116)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 114/181 (62%), Positives = 138/181 (76%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             AN+K  KGPKVT  V+F  QIG+  VG++  GLFGKTVP+TV NF+ LA   +G GYK S
Sbjct:    33 ANDK-KKGPKVTVKVYFDFQIGDEPVGRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNS 91

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    92 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 151

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KT WLDG+HVVFGKV+ G D+V+K+E+++TD RD+P++ V IVDCG   VE+PF
Sbjct:   152 FFITTVKTSWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVIIVDCGKIEVEKPF 211

Query:   206 S 206
             +
Sbjct:   212 A 212

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0051169 "nuclear transport" evidence=TAS

MGI|MGI:97750 Ppib "peptidylprolyl isomerase B" [Mus musculus (taxid:10090)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 114/181 (62%), Positives = 139/181 (76%)

Query:    26 ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
             AN+K  KGPKVT  V+F +QIG+ +VG++  GLFGKTVP+TV NF+ LA   +G GYK S
Sbjct:    33 ANDK-KKGPKVTVKVYFDLQIGDESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNS 91

Query:    86 KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
             KFHRVIKDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct:    92 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 151

Query:   146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
             FFITT KT WLDG+HVVFGKV+ G D+V+K+ES++TD RD+P++ V IVD G   VE+PF
Sbjct:   152 FFITTVKTSWLDGKHVVFGKVLEGMDVVRKVESTKTDSRDKPLKDVIIVDSGKIEVEKPF 211

Query:   206 S 206
             +
Sbjct:   212 A 212

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CP78	PPIB_CRYNJ	5, ., 2, ., 1, ., 8	0.5528	0.7911	0.8528	yes	N/A
Q9TW32	PPIB_DICDI	5, ., 2, ., 1, ., 8	0.5872	0.6586	0.8324	yes	N/A
P23284	PPIB_HUMAN	5, ., 2, ., 1, ., 8	0.6195	0.8072	0.9305	yes	N/A
Q8X166	PPIB_ASPNG	5, ., 2, ., 1, ., 8	0.5978	0.7590	0.8915	yes	N/A
Q9ASS6	CP20B_ARATH	5, ., 2, ., 1, ., 8	0.5913	0.7269	0.6988	yes	N/A
O94273	PPIB_SCHPO	5, ., 2, ., 1, ., 8	0.5968	0.7510	0.9303	yes	N/A
Q6C4W6	PPIB_YARLI	5, ., 2, ., 1, ., 8	0.5186	0.8473	0.9254	yes	N/A
P80311	PPIB_BOVIN	5, ., 2, ., 1, ., 8	0.6341	0.8072	0.9305	yes	N/A
P35176	CYPD_YEAST	5, ., 2, ., 1, ., 8	0.5185	0.7469	0.8266	yes	N/A
P52013	CYP5_CAEEL	5, ., 2, ., 1, ., 8	0.7159	0.7068	0.8627	no	N/A
P52014	CYP6_CAEEL	5, ., 2, ., 1, ., 8	0.6373	0.7670	0.9502	yes	N/A
P0C1H9	PPIB1_RHIO9	5, ., 2, ., 1, ., 8	0.5490	0.8072	0.9617	N/A	N/A
Q4I5R9	PPIB_GIBZE	5, ., 2, ., 1, ., 8	0.6184	0.6947	0.6975	yes	N/A
Q4WP12	PPIB_ASPFU	5, ., 2, ., 1, ., 8	0.5945	0.7389	0.8803	yes	N/A
Q08E11	PPIC_BOVIN	5, ., 2, ., 1, ., 8	0.5756	0.8072	0.9481	no	N/A
Q5B4R3	PPIB_EMENI	5, ., 2, ., 1, ., 8	0.5854	0.7751	0.9018	yes	N/A
P24369	PPIB_MOUSE	5, ., 2, ., 1, ., 8	0.6195	0.8072	0.9305	yes	N/A
P24368	PPIB_RAT	5, ., 2, ., 1, ., 8	0.6528	0.7710	0.8888	yes	N/A
P24367	PPIB_CHICK	5, ., 2, ., 1, ., 8	0.6914	0.7028	0.8454	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.963
4th Layer	5.2.1.8	0.946

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	249
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	2e-86
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	3e-62
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	5e-59
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	3e-58
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	3e-57
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	1e-55
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	4e-52
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	5e-52
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	2e-49
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	2e-44
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	1e-43
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	6e-31
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	9e-19
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	1e-16
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	2e-15
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	1e-13
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	1e-09

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  253 bits (648), Expect = 2e-86
 Identities = 100/165 (60%), Positives = 118/165 (71%), Gaps = 6/165 (3%)

Query: 38  DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIK 92
             V+F I IG    G+I + LF   VP+T +NF  L    +G      GYKGS FHRVI 
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIP 60

Query: 93  DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
           DFMIQGGD+T+G+GTGG SIYG+KF DENFKL H G G LSMANAG +TNGSQFFITT K
Sbjct: 61  DFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVK 120

Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           TPWLDG+HVVFGKV+ G D+VKKIE+  + G  +P + V I DCG
Sbjct: 121 TPWLDGKHVVFGKVVEGMDVVKKIENVGS-GNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  193 bits (491), Expect = 3e-62
 Identities = 88/165 (53%), Positives = 110/165 (66%), Gaps = 6/165 (3%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK---RPEG--QGYKGSKFHRVIKD 93
           +V+F + IG +  G+I++ LF    P+T +NF +      R  G  QGYKG +FHRVIKD
Sbjct: 20  VVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKD 79

Query: 94  FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQGGD+ KGDGTG  SIYG KFEDENF   H G G LSMAN+G +TNG QFFIT  K 
Sbjct: 80  FMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKC 139

Query: 154 PWLDGRHVVFGKVITGGD-IVKKIESSETDGRDRPVQGVTIVDCG 197
            WLD +HVVFG+V+  G  +V+KIE+  T   +RP     I +CG
Sbjct: 140 DWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECG 184

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  183 bits (466), Expect = 5e-59
 Identities = 83/149 (55%), Positives = 99/149 (66%), Gaps = 6/149 (4%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
           +   G+I I L+G   P+TV+NF+ LA+   G  Y G+ FHRVI  FMIQGGD T     
Sbjct: 3   DTTKGRIVIELYGDEAPKTVENFLSLAR---GGFYDGTTFHRVIPGFMIQGGDPT--GTG 57

Query: 108 GGASIYGDKFEDENFKLS-HYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GG S  G KF DENF L  H+  G LSMANAG +TNGSQFFITT  TP LDG+H VFGKV
Sbjct: 58  GGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKV 117

Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVD 195
           + G D+V KIE  +TD   RP++ VTI D
Sbjct: 118 VEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  182 bits (464), Expect = 3e-58
 Identities = 85/164 (51%), Positives = 100/164 (60%), Gaps = 7/164 (4%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL------AKRPEGQGYKGSKFHRVIKD 93
           V+F I I     G+I   LF    P+T +NF  L          +   YKGS FHR+I  
Sbjct: 18  VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLHYKGSIFHRIIPQ 77

Query: 94  FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FM QGGD T  +GTGG SIYG KF DENFKL H   G LSMANAG +TNGSQFFITT   
Sbjct: 78  FMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPC 137

Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDG+HVVFGKVI G ++V+ +E   T     P + V + DCG
Sbjct: 138 PWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKKPVVVTDCG 180

Length = 183

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  178 bits (454), Expect = 3e-57
 Identities = 71/149 (47%), Positives = 89/149 (59%), Gaps = 9/149 (6%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             N+G+I I LFG   P+TV+NF+ L K+     Y G+ FHRVI  FMIQGGD T     
Sbjct: 5   TTNLGRIVIELFGDEAPKTVENFLSLCKKG---FYDGTIFHRVIPGFMIQGGDPTGPGTG 61

Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI 167
           G  SI      DE      +  G LSMA +G ++ GSQFFIT    P LDG + VFG+V+
Sbjct: 62  GKRSI-----PDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDAPHLDGGYTVFGRVV 116

Query: 168 TGGDIVKKIESSETDGRDRPVQGVTIVDC 196
            G D+V+KIE  ETDG DRP++ V I  C
Sbjct: 117 EGMDVVEKIEKVETDG-DRPLKDVKITSC 144

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  175 bits (445), Expect = 1e-55
 Identities = 75/157 (47%), Positives = 96/157 (61%), Gaps = 13/157 (8%)

Query: 46  IGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGD 105
           I E N G I I L+    P+TV NF++L K      Y G+ FHRVI  FMIQGGD T GD
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLVKEG---FYDGTIFHRVIPGFMIQGGDPTGGD 59

Query: 106 GTGGASIYGDKFEDENFKLSH--YGSGWLSMANAG-KDTNGSQFFITTKKTPWLDGRHVV 162
           GTGG       F+DENF L+   +  G LSMA AG  ++NGSQFFIT    P+LDG++ V
Sbjct: 60  GTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTV 116

Query: 163 FGKVITGGDIVKKIESSETDG----RDRPVQGVTIVD 195
           FG+V+ G D+V KI++ +TD     +D P   V I+ 
Sbjct: 117 FGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILS 153

Length = 158

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  165 bits (420), Expect = 4e-52
 Identities = 80/148 (54%), Positives = 102/148 (68%), Gaps = 6/148 (4%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
           E  +G+I + L+    P+T +NF ELAKR     Y G+ FHR+IKDFMIQGGD T G G 
Sbjct: 3   ETTMGEITLELYWNHAPKTCKNFYELAKRGY---YNGTIFHRLIKDFMIQGGDPT-GTGR 58

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GGASIYG KFEDE + +L H G+G LSMANAG +TNGSQFFIT   TPWLDG+H +FG+V
Sbjct: 59  GGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRV 118

Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
             G  +++ +   +T   DRP+  V I+
Sbjct: 119 SKGMKVIENMVEVQTQ-TDRPIDEVKIL 145

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  165 bits (420), Expect = 5e-52
 Identities = 78/145 (53%), Positives = 99/145 (68%), Gaps = 5/145 (3%)

Query: 52  GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS 111
           G I I LF +  P+TV+NF   A+      Y  + FHRVIK FMIQ GD T GDGTGG S
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHARNGY---YNNTIFHRVIKGFMIQTGDPT-GDGTGGES 62

Query: 112 IYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGG 170
           I+G +FEDE +  L H     LSMANAG +TNGSQFFITT  TPWLD +H VFG+V+ G 
Sbjct: 63  IWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGM 122

Query: 171 DIVKKIESSETDGRDRPVQGVTIVD 195
           D+V++IE+ +TD  DRP + + I++
Sbjct: 123 DVVQRIENVKTDKNDRPYEDIKIIN 147

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  159 bits (404), Expect = 2e-49
 Identities = 69/149 (46%), Positives = 93/149 (62%), Gaps = 5/149 (3%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             N G + + L     P+  +NFI+L K+     Y G+ FHR I++FMIQGGD T G G 
Sbjct: 5   HTNKGDLNLELHCDKAPKACENFIKLCKKGY---YDGTIFHRSIRNFMIQGGDPT-GTGR 60

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GG SI+G  F+DE    LSH G G LSMAN+G +TNGSQFFIT +    LDG+H VFG+V
Sbjct: 61  GGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRV 120

Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVD 195
           + G + ++ +E+    G DRP + + I D
Sbjct: 121 VGGLETLEAMENVPDPGTDRPKEEIKIED 149

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  147 bits (372), Expect = 2e-44
 Identities = 75/165 (45%), Positives = 98/165 (59%), Gaps = 10/165 (6%)

Query: 51  VGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGA 110
            G I+I L+ K  P+  +NFI+L    EG  Y  + FHRV+  F+IQGGD T G GTGG 
Sbjct: 14  AGDIDIELWSKEAPKACRNFIQLCL--EGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGE 69

Query: 111 SIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG 169
           SIYG+ F+DE + +L     G + MANAG D+NGSQFF T  K   L+ +H +FGKV TG
Sbjct: 70  SIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKV-TG 128

Query: 170 GDI--VKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKI 212
             I  + K+   ETD  +RPV    I       +E PF D+V +I
Sbjct: 129 DTIYNLLKLAEVETDKDERPVYPPKITSV--EVLENPFDDIVPRI 171

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  144 bits (364), Expect = 1e-43
 Identities = 71/150 (47%), Positives = 89/150 (59%), Gaps = 10/150 (6%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           N+G I+I LF    P+  +NF+ L        Y G  FHR IK FM+Q GD T G G GG
Sbjct: 8   NLGDIKIELFCDDCPKACENFLALCA---SGYYNGCIFHRNIKGFMVQTGDPT-GTGKGG 63

Query: 110 ASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
            SI+G KFEDE  + L H   G +SMAN G +TNGSQFFIT  K P LDG++ VFGKVI 
Sbjct: 64  ESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVID 123

Query: 169 GGDIVKKIESSETDGRDRP-----VQGVTI 193
           G + +  +E    D + RP     ++ VTI
Sbjct: 124 GFETLDTLEKLPVDKKYRPLEEIRIKDVTI 153

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  112 bits (281), Expect = 6e-31
 Identities = 66/170 (38%), Positives = 91/170 (53%), Gaps = 17/170 (10%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
           E  +G + I LF    P    NF++L K    + Y    F+ V KDF+ Q GD T G G 
Sbjct: 3   ETTLGDLVIDLFTDECPLACLNFLKLCKL---KYYNFCLFYNVQKDFIAQTGDPT-GTGA 58

Query: 108 GGASIYGDK-------FEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFIT-TKKTPWLDG 158
           GG SIY          FE E    L H   G +SM NAG + NGSQF+IT  +   +LDG
Sbjct: 59  GGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDG 118

Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPV-EEPFSD 207
           +H VFG+V+ G D+++KI  +  D   RP++ + I    HT + ++PF D
Sbjct: 119 KHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRI---KHTHILDDPFPD 165

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 82.2 bits (203), Expect = 9e-19
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRV- 90
            +  I IG+V  G++   LF   VP TV+NF  L     G          Y  +  H V 
Sbjct: 55  AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVD 114

Query: 91  IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
             + +I  G+      +   S  G    DE ++  H   G L+M + G  T+GS F IT 
Sbjct: 115 RNNNIIVLGELD----SFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITL 170

Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEP 204
             +P LD + VVFGK +    +++K+ES   D   RP+  VT+  CG    E+P
Sbjct: 171 GPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKP 224

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 53/156 (33%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
           + ++G I + L+    P TV+NF+   ++     Y  + FHRVI  F+IQGG +T  D  
Sbjct: 3   QTSLGDIVVELYDDKAPITVENFLAYVRKGF---YDNTIFHRVISGFVIQGGGFTP-DLA 58

Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-----GRHV 161
              ++   K E  N   +  G+  ++MA     D+  SQFFI  K    LD       + 
Sbjct: 59  QKETLKPIKNEAGNGLSNTRGT--IAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYT 116

Query: 162 VFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
           VFG+V  G D+V KI   ET       D PVQ V I
Sbjct: 117 VFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVII 152

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 72.2 bits (177), Expect = 2e-15
 Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 16/154 (10%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           + G IE+ L  +  P +V+NF++      G  Y  + FHRVI  FMIQGG +T+      
Sbjct: 36  SAGNIELELNSQKAPVSVKNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFTE-QMQQK 91

Query: 110 ASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-GR----HVVF 163
                 K E +N   +  G+  ++MA  A KD+  SQFFI      +LD G+    + VF
Sbjct: 92  KPNPPIKNEADNGLRNTRGT--IAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 149

Query: 164 GKVITGGDIVKKIESSETDG----RDRPVQGVTI 193
           GKV+ G D+  KI    T      ++ P + V I
Sbjct: 150 GKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 183

Length = 190

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 51/176 (28%), Positives = 71/176 (40%), Gaps = 37/176 (21%)

Query: 49  VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTG 108
            + G I I L G   P T  NF++L +R     Y G +FHRV   F++Q GD    +   
Sbjct: 4   TDNGTITIVLDGYNAPVTAGNFVDLVER---GFYDGMEFHRVEGGFVVQTGDPQGKNPGF 60

Query: 109 --------------------GASIYGDKFE-----DENFKLSHYGSGWLSMANAGKDTNG 143
                                  +YG   E     DE   L     G ++MA    D N 
Sbjct: 61  PDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNS 120

Query: 144 --SQFFI-------TTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQG 190
             SQFF        T  +   LDGR+ VFG V  G DI+++++  +     R V+G
Sbjct: 121 ASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVGDKIESARVVEG 176

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 53/160 (33%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKG--DGT 107
           N G I I  F    P TV+NF++  +  EG  Y  + FHRVI  FMIQGG +  G     
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCR--EG-FYNNTIFHRVINGFMIQGGGFEPGMKQKA 63

Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS-QFFITTKKTPWLDGR------- 159
               I   K E  N   +  G+  L+MA      + + QFFI      +L+         
Sbjct: 64  TKEPI---KNEANNGLKNTRGT--LAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118

Query: 160 -HVVFGKVITGGDIVKKIESSETDGR-----DRPVQGVTI 193
            + VF +V+ G D+V KI+   T GR     D P + V I
Sbjct: 119 GYCVFAEVVEGMDVVDKIKGVAT-GRSGMHQDVPKEDVII 157

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	249
KOG0880|consensus	217		100.0
KOG0546|consensus	372		100.0
KOG0879|consensus	177		100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0111|consensus	298		100.0
PTZ00060	183	cyclophilin; Provisional	100.0
KOG0881|consensus	164		100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
KOG0883|consensus	518		100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
KOG0882|consensus	558		100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0884|consensus	161		100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
KOG0865|consensus	167		100.0
KOG0885|consensus	439		100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415|consensus	479		100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0880|consensus	217		98.17
KOG0882|consensus	558		97.61
KOG0546|consensus	372		97.07
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.63
PRK00969	508	hypothetical protein; Provisional	96.6
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.81
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.77
PRK00969	508	hypothetical protein; Provisional	95.02
KOG0879|consensus	177		94.69
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	94.34
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	93.77
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	93.21
PTZ00221	249	cyclophilin; Provisional	92.56
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	90.81
PTZ00060	183	cyclophilin; Provisional	89.62
KOG0111|consensus	298		88.97
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	87.39
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	84.77
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	82.26
KOG0881|consensus	164		81.58

>KOG0880|consensus

Probab=100.00  E-value=2.3e-61  Score=392.69  Aligned_cols=175  Identities=67%  Similarity=1.117  Sum_probs=162.6

Q ss_pred             hhcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhc-CCCCCccCCCEEEEeecCceeeecCCCCCCCC
Q psy10359         29 KVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK-RPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT  107 (249)
Q Consensus        29 ~~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~-~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~  107 (249)
                      ..++.|++|++|||||.+++...|||+|+||++.+|+||+||.+||+ +..|+||.|++||||+|+|||||||++.+++.
T Consensus        31 ~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gt  110 (217)
T KOG0880|consen   31 KYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGT  110 (217)
T ss_pred             ccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCC
Confidence            45788999999999999999999999999999999999999999999 66689999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCc
Q psy10359        108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP  187 (249)
Q Consensus       108 ~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P  187 (249)
                      |+.++||..|+||++.++|+++|+|||||.|||+||||||||+...+||||+|+|||+|++|||+|.+|++++++.+++|
T Consensus       111 Gg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP  190 (217)
T KOG0880|consen  111 GGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKP  190 (217)
T ss_pred             CCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988877666


Q ss_pred             ccceEEeeeeeeccCC
Q psy10359        188 VQGVTIVDCGHTPVEE  203 (249)
Q Consensus       188 ~~~i~I~~cg~l~~~~  203 (249)
                      .++++|.+||.+..+.
T Consensus       191 ~e~v~I~~~g~l~~~~  206 (217)
T KOG0880|consen  191 LEDVVIANCGELPVEY  206 (217)
T ss_pred             cccEEEeecCcccccc
Confidence            6666666666554433

>KOG0546|consensus

Probab=100.00  E-value=2.8e-57  Score=399.19  Aligned_cols=167  Identities=54%  Similarity=0.931  Sum_probs=162.2

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC--------ccCCCEEEEeecCceeeecCCCCCCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRVIKDFMIQGGDYTKGDGT  107 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~--------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~  107 (249)
                      ..++|||||+|++.+.|||+||||.|.||+||+||+.||+|..|.        +|+|+.||||+++|||||||++.++|+
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt   86 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT   86 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence            468999999999999999999999999999999999999998863        499999999999999999999999999


Q ss_pred             CCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCc
Q psy10359        108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP  187 (249)
Q Consensus       108 ~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P  187 (249)
                      ||.|+||..|+||++.++|+++++|||||.|||+||||||||+.++|||||+|+|||+||+|++||+.|+++.++..++|
T Consensus        87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP  166 (372)
T KOG0546|consen   87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP  166 (372)
T ss_pred             CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeeeeccC
Q psy10359        188 VQGVTIVDCGHTPVE  202 (249)
Q Consensus       188 ~~~i~I~~cg~l~~~  202 (249)
                      ..+|+|.+||+|+..
T Consensus       167 ~~dV~I~dCGel~~~  181 (372)
T KOG0546|consen  167 LADVVISDCGELVKK  181 (372)
T ss_pred             ccceEeccccccccc
Confidence            999999999999764

>KOG0879|consensus

Probab=100.00  E-value=1.2e-51  Score=317.11  Aligned_cols=165  Identities=54%  Similarity=0.912  Sum_probs=159.3

Q ss_pred             CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCC-----CccCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359         34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIKDFMIQGGDYTKGDGTG  108 (249)
Q Consensus        34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g-----~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~  108 (249)
                      ++..+.|||||++++.++|||.||||.|.+|+|++||++.|+|.+.     .||+++.|||++++|||||||...++|+|
T Consensus         7 ~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGtG   86 (177)
T KOG0879|consen    7 SPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGTG   86 (177)
T ss_pred             CCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCCce
Confidence            4457899999999999999999999999999999999999999752     37999999999999999999999999999


Q ss_pred             CCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc
Q psy10359        109 GASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV  188 (249)
Q Consensus       109 ~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~  188 (249)
                      ..++|+.+|+||++.++|+.+|+|||||+|+++||+|||||..++.|||++|+|||||++|+.++++|+++++.++++|+
T Consensus        87 ~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPK  166 (177)
T KOG0879|consen   87 VASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPK  166 (177)
T ss_pred             EEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeeeee
Q psy10359        189 QGVTIVDCGH  198 (249)
Q Consensus       189 ~~i~I~~cg~  198 (249)
                      -+|.|..||.
T Consensus       167 l~v~i~qCGe  176 (177)
T KOG0879|consen  167 LPVVIVQCGE  176 (177)
T ss_pred             CcEEEeeccc
Confidence            9999999996

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=7.3e-48  Score=315.72  Aligned_cols=159  Identities=62%  Similarity=1.065  Sum_probs=150.2

Q ss_pred             cEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCC-----CccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359         38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI  112 (249)
Q Consensus        38 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g-----~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~  112 (249)
                      |+|||||++++++.|+|+||||.+.||++|+||++||++..|     ..|+++.|||++|+|++|+||+..+++.++.++
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~~   80 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGKSI   80 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccccCCCEEEEEeCCcEEEcCCccCCCCCCCCcc
Confidence            579999999999999999999999999999999999997545     239999999999999999999877777888889


Q ss_pred             CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359        113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT  192 (249)
Q Consensus       113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  192 (249)
                      ++..+++|...+.|+++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus        81 ~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~i~  159 (164)
T cd01926          81 YGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKKVV  159 (164)
T ss_pred             cCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCCeE
Confidence            9999999988899999999999999999999999999999999999999999999999999999999998 899999999


Q ss_pred             Eeeee
Q psy10359        193 IVDCG  197 (249)
Q Consensus       193 I~~cg  197 (249)
                      |.+||
T Consensus       160 I~~cG  164 (164)
T cd01926         160 IADCG  164 (164)
T ss_pred             EEECC
Confidence            99997

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=1.9e-47  Score=328.98  Aligned_cols=169  Identities=33%  Similarity=0.469  Sum_probs=153.8

Q ss_pred             CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC--------ccCCCEEEEeecC-ceeeecCCCC
Q psy10359         33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRVIKD-FMIQGGDYTK  103 (249)
Q Consensus        33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~--------~Y~g~~f~ri~~~-~~iq~Gd~~~  103 (249)
                      .+..+++||||+++++++.|+|+||||.+.||+||+||++||++..|.        +|+|+.||||+++ +++|+||+..
T Consensus        48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~  127 (249)
T PTZ00221         48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS  127 (249)
T ss_pred             cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence            446689999999999999999999999999999999999999875432        3999999999986 8999999763


Q ss_pred             CCCCCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCC
Q psy10359        104 GDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDG  183 (249)
Q Consensus       104 ~~~~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~  183 (249)
                          .+.+.+|.+|++|++.++|+++|+|+|++.++++||||||||+.++|+||++|+|||||++||+||++|++++++.
T Consensus       128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~  203 (249)
T PTZ00221        128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD  203 (249)
T ss_pred             ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence                2346678899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCcccceEEeeeeeeccCCCc
Q psy10359        184 RDRPVQGVTIVDCGHTPVEEPF  205 (249)
Q Consensus       184 ~~~P~~~i~I~~cg~l~~~~p~  205 (249)
                      +++|.++|+|.+||++....|-
T Consensus       204 ~grP~~~V~I~~Cgvl~~~~p~  225 (249)
T PTZ00221        204 VGRPLLPVTVSFCGALTGEKPP  225 (249)
T ss_pred             CCCCCCCeEEEECeEecCCCCC
Confidence            8999999999999999755543

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=4.4e-47  Score=316.45  Aligned_cols=163  Identities=53%  Similarity=0.952  Sum_probs=153.1

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC---C--CccCCCEEEEeecCceeeecCCCCCCCCCCCc
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE---G--QGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS  111 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~---g--~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~  111 (249)
                      .++|||||++++++.|+|+||||.+.+|+||+||++||++++   |  .+|+++.||||+|++++||||+..+++.++.+
T Consensus        18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~   97 (186)
T PLN03149         18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS   97 (186)
T ss_pred             CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence            568999999999999999999999999999999999998743   2  24999999999999999999987788888888


Q ss_pred             cCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEE-ccHHHHHHHHhCCCCCCCCcccc
Q psy10359        112 IYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI-TGGDIVKKIESSETDGRDRPVQG  190 (249)
Q Consensus       112 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi-~G~~vl~~I~~~~~~~~~~P~~~  190 (249)
                      +|+..|++|...+.|+++|+|+|++.++++++|||||+++++|+||++|+|||||+ +||+||++|++++++++++|.++
T Consensus        98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~  177 (186)
T PLN03149         98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLA  177 (186)
T ss_pred             ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCC
Confidence            99999999988899999999999999999999999999999999999999999999 79999999999999989999999


Q ss_pred             eEEeeeeee
Q psy10359        191 VTIVDCGHT  199 (249)
Q Consensus       191 i~I~~cg~l  199 (249)
                      |+|.+||++
T Consensus       178 i~I~~cG~~  186 (186)
T PLN03149        178 CVISECGEM  186 (186)
T ss_pred             eEEEeCEeC
Confidence            999999974

>KOG0111|consensus

Probab=100.00  E-value=2.5e-48  Score=321.28  Aligned_cols=166  Identities=52%  Similarity=0.885  Sum_probs=160.1

Q ss_pred             CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359         33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI  112 (249)
Q Consensus        33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~  112 (249)
                      +..-+++||+++.|++...|||++.|..|..|+|++||..||++..|+||+|++||||+|.||+||||.+.++|+|+.++
T Consensus       132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksi  211 (298)
T KOG0111|consen  132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSI  211 (298)
T ss_pred             hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccc
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359        113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT  192 (249)
Q Consensus       113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  192 (249)
                      ||..|.||++.++|..+|+|||+|+|+|+|||||||++....|||++|+|||.|++||+||+++++..+. +++|...|+
T Consensus       212 ygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsk-sgkp~qkv~  290 (298)
T KOG0111|consen  212 YGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSK-SGKPQQKVK  290 (298)
T ss_pred             ccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCC-CCCcceEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999998764 789999999


Q ss_pred             Eeeeeee
Q psy10359        193 IVDCGHT  199 (249)
Q Consensus       193 I~~cg~l  199 (249)
                      |.+||.+
T Consensus       291 i~~cge~  297 (298)
T KOG0111|consen  291 IVECGEI  297 (298)
T ss_pred             EEecccc
Confidence            9999976

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=1.2e-46  Score=313.37  Aligned_cols=161  Identities=53%  Similarity=0.885  Sum_probs=150.9

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCC-------CCCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRP-------EGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~-------~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      +++||||+++++++.|+|+||||.+.||++|+||++||++.       .++ |+++.|||++|++++||||+..+.+.++
T Consensus        15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g   93 (183)
T PTZ00060         15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG   93 (183)
T ss_pred             CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence            67899999999999999999999999999999999999853       245 9999999999999999999887777888


Q ss_pred             CccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCccc
Q psy10359        110 ASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ  189 (249)
Q Consensus       110 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~  189 (249)
                      .+.++..+++|...+.|..+|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.++. +++|.+
T Consensus        94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~-~~~P~~  172 (183)
T PTZ00060         94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQ-SGYPKK  172 (183)
T ss_pred             CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCC-CCCCcC
Confidence            8889999999988899999999999999999999999999999999999999999999999999999998874 689999


Q ss_pred             ceEEeeeeee
Q psy10359        190 GVTIVDCGHT  199 (249)
Q Consensus       190 ~i~I~~cg~l  199 (249)
                      +|+|.+||++
T Consensus       173 ~v~I~~cg~~  182 (183)
T PTZ00060        173 PVVVTDCGEL  182 (183)
T ss_pred             CeEEEEeEEc
Confidence            9999999987

>KOG0881|consensus

Probab=100.00  E-value=7.6e-48  Score=292.86  Aligned_cols=151  Identities=58%  Similarity=0.951  Sum_probs=144.3

Q ss_pred             cEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCC
Q psy10359         38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKF  117 (249)
Q Consensus        38 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~  117 (249)
                      +.|+++     |+.|.|++|||-+.||+||+||.+|++.  || |+|..||||+++|+|||||++ +.|.|+.++||..|
T Consensus        10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLarr--gY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF   80 (164)
T KOG0881|consen   10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELARR--GY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKF   80 (164)
T ss_pred             CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHHhc--cc-ccceeeeehhhhheeecCCCC-CCCCCccccccchh
Confidence            457777     9999999999999999999999999999  77 999999999999999999998 88999999999999


Q ss_pred             CCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeee
Q psy10359        118 EDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDC  196 (249)
Q Consensus       118 ~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c  196 (249)
                      +||. ..++|..+|.|||||.|||+|||||||||.+.+||||+|++||||..||+|+.++..+.++.+++|..+++|.+.
T Consensus        81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika  160 (164)
T KOG0881|consen   81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKA  160 (164)
T ss_pred             hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEee
Confidence            9996 469999999999999999999999999999999999999999999999999999999999999999999999985


Q ss_pred             e
Q psy10359        197 G  197 (249)
Q Consensus       197 g  197 (249)
                      -
T Consensus       161 ~  161 (164)
T KOG0881|consen  161 Y  161 (164)
T ss_pred             e
Confidence            3

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=7.7e-46  Score=302.20  Aligned_cols=152  Identities=47%  Similarity=0.829  Sum_probs=143.7

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~  127 (249)
                      |+.|+|+||||.+.||+||+||++||+.  |+ |+++.|||++|++++||||+. +++.++.++++..+++|.. .++|+
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h~   81 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKK--GY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSHD   81 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhc--Cc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCcC
Confidence            9999999999999999999999999998  66 999999999999999999987 6678888899999999954 57898


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeeeeccCCCch
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS  206 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~p~~  206 (249)
                      ++|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++++++++++|.++|+|.+|+++  .|||+
T Consensus        82 ~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~--~dpf~  158 (159)
T cd01923          82 GRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF--VDPFE  158 (159)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE--eCCCC
Confidence            999999999999999999999999999999999999999999999999999999889999999999999999  68886

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=6.1e-45  Score=298.93  Aligned_cols=154  Identities=42%  Similarity=0.686  Sum_probs=139.3

Q ss_pred             ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCC-------CCCCCC
Q psy10359         48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYG-------DKFEDE  120 (249)
Q Consensus        48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~-------~~~~~e  120 (249)
                      .|+.|+|+||||.+.||+||+||++||++  ++ |+++.|||+++++++||||+. +++.++.++++       ..+++|
T Consensus         3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~--~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e   78 (166)
T cd01921           3 ETTLGDLVIDLFTDECPLACLNFLKLCKL--KY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPE   78 (166)
T ss_pred             EeccCCEEEEEcCCCCCHHHHHHHHHHhc--CC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcc
Confidence            38999999999999999999999999999  66 999999999999999999987 55666666554       346667


Q ss_pred             cc-cCCCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeee
Q psy10359        121 NF-KLSHYGSGWLSMANAGKDTNGSQFFITTKK-TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH  198 (249)
Q Consensus       121 ~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~-~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~  198 (249)
                      .. .++|+.+|+|+|++.++++++|||||++.+ +++||++|+|||||++|||||++|++++++++++|.++|+|.+|++
T Consensus        79 ~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i  158 (166)
T cd01921          79 ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHI  158 (166)
T ss_pred             cCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEE
Confidence            54 678989999999999999999999999975 8999999999999999999999999999999999999999999999


Q ss_pred             eccCCCchh
Q psy10359        199 TPVEEPFSD  207 (249)
Q Consensus       199 l~~~~p~~~  207 (249)
                      +  .|||.+
T Consensus       159 ~--~~pf~~  165 (166)
T cd01921         159 L--DDPFPD  165 (166)
T ss_pred             E--CCCCCC
Confidence            9  689864

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-45  Score=293.14  Aligned_cols=145  Identities=52%  Similarity=0.849  Sum_probs=130.7

Q ss_pred             ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCC
Q psy10359         48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHY  127 (249)
Q Consensus        48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~  127 (249)
                      .|+.|+|+|+||++.||+||+||++||+.  |+ |+|+.||||+|+||+||||+..+.+.++.+   .+|++|.....|.
T Consensus         5 ~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~--g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~~---~~f~~E~~~~~~~   78 (158)
T COG0652           5 ETNKGDITIELYPDKAPKTVANFLQLVKE--GF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGPG---PPFKDENFALNGD   78 (158)
T ss_pred             eccCCCEEEEECCCcCcHHHHHHHHHHHc--CC-CCCceEEEeecCceeecCCCCCCCCCCCCC---CCCcccccccccc
Confidence            49999999999999999999999999998  77 999999999999999999999776777774   7899998888777


Q ss_pred             c--ceEEEEecCC-CCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC----CCcccceEEeeeee
Q psy10359        128 G--SGWLSMANAG-KDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTIVDCGH  198 (249)
Q Consensus       128 ~--~G~vsm~~~~-~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~----~~P~~~i~I~~cg~  198 (249)
                      +  +|+|||||++ |++|+|||||++.++||||++|+|||+|++|||+|++|++..+...    +.|..+++|....+
T Consensus        79 ~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~~  156 (158)
T COG0652          79 RHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVKI  156 (158)
T ss_pred             cCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeeee
Confidence            7  9999999999 9999999999999999999999999999999999999999877643    45656777776544

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=2.3e-44  Score=291.70  Aligned_cols=145  Identities=49%  Similarity=0.801  Sum_probs=137.0

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~  127 (249)
                      |+.|+|+||||++.||+||+||++||++  |+ |+|+.|||++|+|++||||+. +++.++.++++.++++|.. .++|+
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~~   82 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCAS--GY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKHD   82 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHhc--Cc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCcC
Confidence            9999999999999999999999999999  66 999999999999999999986 5677788888999999975 57888


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeee
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG  197 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg  197 (249)
                      ++|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++++++++++|..+|+|.+|.
T Consensus        83 ~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          83 SRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             CCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            9999999999999999999999999999999999999999999999999999999899999999999973

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=3.9e-44  Score=295.35  Aligned_cols=168  Identities=44%  Similarity=0.727  Sum_probs=153.8

Q ss_pred             CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccC
Q psy10359         34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIY  113 (249)
Q Consensus        34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~  113 (249)
                      |+.+.+|.++     |+.|+|+||||.+.+|+||+||++||+.  |+ |+++.|||++|+|++|||++. +++.++.++|
T Consensus         2 ~~~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~~--~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~   72 (171)
T cd01925           2 PPTTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCLE--GY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIY   72 (171)
T ss_pred             CCcccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHhc--CC-CCCCEEEEEcCCcEEEccccC-CCCccCcccC
Confidence            5667778777     9999999999999999999999999999  66 999999999999999999987 6678888899


Q ss_pred             CCCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc-cHHHHHHHHhCCCCCCCCcccce
Q psy10359        114 GDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT-GGDIVKKIESSETDGRDRPVQGV  191 (249)
Q Consensus       114 ~~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~-G~~vl~~I~~~~~~~~~~P~~~i  191 (249)
                      +..+++|.. .+.|+++|+|+|++.++++++|||||+++++++||++|+|||||++ +++++++|++++++++++|.++|
T Consensus        73 g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i  152 (171)
T cd01925          73 GEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPP  152 (171)
T ss_pred             CCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCe
Confidence            999999965 5778889999999999999999999999999999999999999993 57889999999999999999999


Q ss_pred             EEeeeeeeccCCCchhhhhhh
Q psy10359        192 TIVDCGHTPVEEPFSDVVKKI  212 (249)
Q Consensus       192 ~I~~cg~l~~~~p~~~vv~~i  212 (249)
                      +|.+|+++  .+||.+.+.+|
T Consensus       153 ~I~~~~i~--~~pf~~~~~~~  171 (171)
T cd01925         153 KITSVEVL--ENPFDDIVPRI  171 (171)
T ss_pred             EEEEEEEE--cCCchhhcccC
Confidence            99999998  78999887654

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>KOG0883|consensus

Probab=100.00  E-value=1.8e-45  Score=325.13  Aligned_cols=173  Identities=44%  Similarity=0.737  Sum_probs=161.8

Q ss_pred             CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCC
Q psy10359         35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYG  114 (249)
Q Consensus        35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~  114 (249)
                      .+..+-|+.+.   |+.|.|.|||+.|.+|++|+||+.||+.  || |+|+.|||.+.+||||||||+ |.|.||.|+||
T Consensus       273 rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~--gY-Ynnt~FHRsIrnFmiQGGDPT-GTG~GGeSiWg  345 (518)
T KOG0883|consen  273 RVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKN--GY-YNNTIFHRSIRNFMIQGGDPT-GTGRGGESIWG  345 (518)
T ss_pred             cccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhc--cc-ccchHHHHHHHHHeeeCCCCC-CCCCCCccccC
Confidence            45667788887   9999999999999999999999999999  77 999999999999999999999 88999999999


Q ss_pred             CCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEE
Q psy10359        115 DKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI  193 (249)
Q Consensus       115 ~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I  193 (249)
                      .+|.||.. .+.|+.||+|||||+||++|||||||+..++.+||++||+||||+.|+++|.+|+++++++.++|..+|+|
T Consensus       346 KpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i  425 (518)
T KOG0883|consen  346 KPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKI  425 (518)
T ss_pred             CccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEE
Confidence            99999975 59999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeccCCCchhhhhhhcccc
Q psy10359        194 VDCGHTPVEEPFSDVVKKIESSE  216 (249)
Q Consensus       194 ~~cg~l~~~~p~~~vv~~iE~~~  216 (249)
                      .+.-|+  -|||+..-+.+|+.+
T Consensus       426 ~~~~VF--VdPfeEa~~e~~kEr  446 (518)
T KOG0883|consen  426 EDAIVF--VDPFEEADKEREKER  446 (518)
T ss_pred             eeeEEe--eCcHHHHHHHHHHHH
Confidence            999888  479988876665443

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=2.3e-44  Score=290.19  Aligned_cols=144  Identities=55%  Similarity=0.897  Sum_probs=136.0

Q ss_pred             ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCC
Q psy10359         48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSH  126 (249)
Q Consensus        48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h  126 (249)
                      .|+.|+|+||||.+.||++|+||++||++  |+ |+++.|||++|+|++||||+. +++.++.++|+..+++|.. .++|
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h   78 (148)
T cd01927           3 HTTKGDIHIRLFPEEAPKTVENFTTHARN--GY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKH   78 (148)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHhhc--CC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCc
Confidence            38999999999999999999999999999  66 999999999999999999986 6678888888999999976 6889


Q ss_pred             CcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        127 YGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       127 ~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      .++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus        79 ~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          79 DRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             CCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            989999999999999999999999999999999999999999999999999999998999999999985

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=2.4e-43  Score=294.79  Aligned_cols=152  Identities=32%  Similarity=0.510  Sum_probs=131.8

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      ..+|.++     |+.|+|+||||.+.||+||+||++||+.  |+ |+|+.|||++|+|++|||++....+   ...++.+
T Consensus        28 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~   96 (190)
T PRK10903         28 DPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYVNS--GF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPP   96 (190)
T ss_pred             CcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHHhc--CC-cCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCc
Confidence            4456665     9999999999999999999999999999  66 9999999999999999999764322   1223567


Q ss_pred             CCCCcccCCCCcceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CceEEEEEEccHHHHHHHHhCCCCC----CCC
Q psy10359        117 FEDENFKLSHYGSGWLSMANAG-KDTNGSQFFITTKKTPWLDG-----RHVVFGKVITGGDIVKKIESSETDG----RDR  186 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~~-~~~~~SqFfItl~~~~~ld~-----~~~vFG~Vi~G~~vl~~I~~~~~~~----~~~  186 (249)
                      +++|.....|+.+|+|+|++.+ +++|+|||||+++++++||+     +|+|||+|++|||||++|+++++++    +++
T Consensus        97 ~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~  176 (190)
T PRK10903         97 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNV  176 (190)
T ss_pred             ccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCc
Confidence            8888655556679999999865 89999999999999999984     8999999999999999999999976    579


Q ss_pred             cccceEEeeeeee
Q psy10359        187 PVQGVTIVDCGHT  199 (249)
Q Consensus       187 P~~~i~I~~cg~l  199 (249)
                      |..+|+|.+|+++
T Consensus       177 P~~~v~I~~~~v~  189 (190)
T PRK10903        177 PSKPVVILSAKVL  189 (190)
T ss_pred             ccCCeEEEEEEEe
Confidence            9999999999876

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=1.1e-43  Score=285.61  Aligned_cols=142  Identities=56%  Similarity=0.976  Sum_probs=133.4

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCc-ccCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN-FKLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~~h~  127 (249)
                      |+.|+|+||||.+.||++|+||++||+.  |+ |+++.|||++|+|++||||+. +.+.++.++++.++++|. ..++|+
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h~   79 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKR--GY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKHT   79 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhc--CC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCCC
Confidence            8999999999999999999999999999  66 999999999999999999986 566777888899999985 468899


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      ++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++ +++|..+|+|.+
T Consensus        80 ~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~  146 (146)
T cd01922          80 GAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK  146 (146)
T ss_pred             CCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence            9999999999999999999999999999999999999999999999999999998 889999999963

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>KOG0882|consensus

Probab=100.00  E-value=1e-42  Score=312.82  Aligned_cols=153  Identities=50%  Similarity=0.827  Sum_probs=144.9

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD  115 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~  115 (249)
                      +...+.+.     |+.|+|.|.||+++||+||+||...|+.  || |+|..||||+++||||+|||. |+|.||.++||+
T Consensus       403 l~~~aiih-----tt~gdi~~kl~p~ecpktvenf~th~rn--gy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~  473 (558)
T KOG0882|consen  403 LGKAAIIH-----TTQGDIHIKLYPEECPKTVENFTTHSRN--GY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGK  473 (558)
T ss_pred             cccceEEE-----ecccceEEEecccccchhhhhhhccccC--cc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccc
Confidence            44455665     9999999999999999999999999999  77 999999999999999999999 899999999999


Q ss_pred             CCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEe
Q psy10359        116 KFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV  194 (249)
Q Consensus       116 ~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~  194 (249)
                      .|+||.. .++|+++-+|||||.|||+||||||||+.+.|||||+|||||||+.||||+++|+++.+++++||.++|.|.
T Consensus       474 dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~ii  553 (558)
T KOG0882|consen  474 DFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKII  553 (558)
T ss_pred             cchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEE
Confidence            9999975 599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eee
Q psy10359        195 DCG  197 (249)
Q Consensus       195 ~cg  197 (249)
                      +..
T Consensus       554 nis  556 (558)
T KOG0882|consen  554 NIS  556 (558)
T ss_pred             EEe
Confidence            853

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=3.5e-40  Score=269.89  Aligned_cols=145  Identities=33%  Similarity=0.540  Sum_probs=124.9

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCc
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYG  128 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~  128 (249)
                      |+.|+|+|+||.+.||+||+||++||+.  |+ |+++.|||++|+|++|||++..+.+.   ..++.++++|.....|+.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~~~~~~~~   79 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCRE--GF-YNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEANNGLKNT   79 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHhc--CC-cCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcccccccCC
Confidence            9999999999999999999999999999  66 99999999999999999997644322   223556777754433447


Q ss_pred             ceEEEEecCC-CCCCCceEEEEcCCCCCCC-------C-CceEEEEEEccHHHHHHHHhCCCCC----CCCcccceEEee
Q psy10359        129 SGWLSMANAG-KDTNGSQFFITTKKTPWLD-------G-RHVVFGKVITGGDIVKKIESSETDG----RDRPVQGVTIVD  195 (249)
Q Consensus       129 ~G~vsm~~~~-~~~~~SqFfItl~~~~~ld-------~-~~~vFG~Vi~G~~vl~~I~~~~~~~----~~~P~~~i~I~~  195 (249)
                      +|+||||+.+ |++|+|||||++.++++||       + +|+|||||++|||||++|++++++.    +++|..+|+|.+
T Consensus        80 ~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~  159 (164)
T PRK10791         80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES  159 (164)
T ss_pred             CcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEE
Confidence            9999999975 8999999999999988876       3 7999999999999999999999976    379999999999


Q ss_pred             eeee
Q psy10359        196 CGHT  199 (249)
Q Consensus       196 cg~l  199 (249)
                      |.+.
T Consensus       160 ~~i~  163 (164)
T PRK10791        160 VTVS  163 (164)
T ss_pred             EEEe
Confidence            8654

>KOG0884|consensus

Probab=100.00  E-value=5.8e-41  Score=253.85  Aligned_cols=152  Identities=46%  Similarity=0.727  Sum_probs=143.0

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~  127 (249)
                      |..|+|-||||.+.+|++|+||+.||...+   |+++.|||-+++|++|+|+++ ..|.|+.++||.+|+||.. .++|+
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~~~~---~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh~   82 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCASDY---YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKHN   82 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhhhhh---ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhhc
Confidence            889999999999999999999999999955   999999999999999999998 7789999999999999975 49999


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC-CCcccceEEeeeeeeccCCCch
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFS  206 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~~p~~  206 (249)
                      .||.|||||+||++|+||||||.+..|+||-+|++||+||+|+|.|+.|+.+++++. .||..++.|.+..+-  .|||.
T Consensus        83 ~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~itih--anp~a  160 (161)
T KOG0884|consen   83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH--ANPFA  160 (161)
T ss_pred             cceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEEe--cCcCC
Confidence            999999999999999999999999999999999999999999999999999999875 899999999986655  67874

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=1.1e-39  Score=264.87  Aligned_cols=141  Identities=36%  Similarity=0.519  Sum_probs=123.6

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCc
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYG  128 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~  128 (249)
                      |+.|+|+||||.+.||+||+||++||+.  |+ |+++.|||++|+|++|||++....+.   ..++.++++|.....|+.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~--g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~   77 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRK--GF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT   77 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhc--CC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence            8999999999999999999999999999  66 99999999999999999998744322   223566777866555678


Q ss_pred             ceEEEEecCC-CCCCCceEEEEcCCCCCCCC-----CceEEEEEEccHHHHHHHHhCCCCCC----CCcccceEEee
Q psy10359        129 SGWLSMANAG-KDTNGSQFFITTKKTPWLDG-----RHVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTIVD  195 (249)
Q Consensus       129 ~G~vsm~~~~-~~~~~SqFfItl~~~~~ld~-----~~~vFG~Vi~G~~vl~~I~~~~~~~~----~~P~~~i~I~~  195 (249)
                      +|+||||+.+ +++++|||||+++++++||+     +|+|||+|++|||||++|++++++++    ++|..+|+|.+
T Consensus        78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~  154 (155)
T cd01920          78 RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES  154 (155)
T ss_pred             ceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence            9999999975 89999999999999999995     79999999999999999999999764    68888888875

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>KOG0865|consensus

Probab=100.00  E-value=1.5e-40  Score=269.82  Aligned_cols=163  Identities=54%  Similarity=0.917  Sum_probs=153.5

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEE---eecCceeeecCCCCCCCCCCCcc
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHR---VIKDFMIQGGDYTKGDGTGGASI  112 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~r---i~~~~~iq~Gd~~~~~~~~~~~~  112 (249)
                      ++++||+|++++++++|+++++||.|..|+|++||..||++.+|++|+++.|||   .++++|+||||.+.++++++.++
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi   81 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI   81 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence            468899999999999999999999999999999999999998899999999999   34579999999999999999999


Q ss_pred             CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359        113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT  192 (249)
Q Consensus       113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  192 (249)
                      |++.|+||++.++|..+|.|+|||.+|++|+|||||++....|||++|+|||+|.+||+++++|+..... ++++.++|.
T Consensus        82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~  160 (167)
T KOG0865|consen   82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKIT  160 (167)
T ss_pred             cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCc-CCcccccEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999986543 788888888


Q ss_pred             Eeeeeee
Q psy10359        193 IVDCGHT  199 (249)
Q Consensus       193 I~~cg~l  199 (249)
                      |.+||.+
T Consensus       161 i~dcg~l  167 (167)
T KOG0865|consen  161 IADCGQL  167 (167)
T ss_pred             EecCCcC
Confidence            8888864

>KOG0885|consensus

Probab=100.00  E-value=7.2e-40  Score=288.35  Aligned_cols=196  Identities=37%  Similarity=0.610  Sum_probs=171.9

Q ss_pred             cCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCC
Q psy10359         31 AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGA  110 (249)
Q Consensus        31 ~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~  110 (249)
                      -..|+.|.+|.+.     |+.|+|.||||...||++|.||++||..  || |+|+.|||++|+|++||||++ ++|+||.
T Consensus         6 ~~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOGe--gy-y~nt~fhrlvp~f~~Qggdp~-~~gtGge   76 (439)
T KOG0885|consen    6 NLEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCLE--GY-YDNTEFHRLVPGFLVQGGDPT-GTGTGGE   76 (439)
T ss_pred             ccCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHHh--cc-ccCceeeeeccchhcccCCCC-CCCCCcc
Confidence            3568889999998     9999999999999999999999999999  77 999999999999999999998 8899999


Q ss_pred             ccCCCCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc-cHHHHHHHHhCCCCCCCCcc
Q psy10359        111 SIYGDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT-GGDIVKKIESSETDGRDRPV  188 (249)
Q Consensus       111 ~~~~~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~-G~~vl~~I~~~~~~~~~~P~  188 (249)
                      ++||.+|.+|.. ++++.++|+|+|||.+.+.||||||+||+++|+|+++|++||+|+. -+-.+-+|..+.++.+.||.
T Consensus        77 siyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~  156 (439)
T KOG0885|consen   77 SIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPV  156 (439)
T ss_pred             ccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCC
Confidence            999999999975 6889999999999999999999999999999999999999999994 46677889999999999999


Q ss_pred             cceEEeeeeeeccCCCchhhhhhhccccC---C-----CCCCCccceEEeecCccCC
Q psy10359        189 QGVTIVDCGHTPVEEPFSDVVKKIESSET---D-----GRDRPVQGVTIVDCGYTPV  237 (249)
Q Consensus       189 ~~i~I~~cg~l~~~~p~~~vv~~iE~~~~---~-----~~d~P~~~v~i~~~g~l~~  237 (249)
                      .+-+|.+|.++  .|||.+++.+..+.+.   .     ....+.+.-.....|+..+
T Consensus       157 ~p~kI~s~EV~--~npFdDI~pr~~r~~~~e~~ke~k~~k~~~~k~~~lLsfgdE~E  211 (439)
T KOG0885|consen  157 DPPKIKSVEVL--INPFDDIKPRELRKESEEKKKERKELKKKGTKNKNLLSFGDEAE  211 (439)
T ss_pred             CccceeeeEee--cCchhhcchhhhhcccchhhhhhcccccccccccceeccccccc
Confidence            99999999888  7999999887644431   1     1123345555666776544

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.6e-38  Score=254.11  Aligned_cols=142  Identities=58%  Similarity=0.909  Sum_probs=129.5

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCC-CC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLS-HY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~-h~  127 (249)
                      |+.|+|+||||.+.||++|+||++||++  ++ |+++.|||++|++++|+|++......+  +.++..+++|..... |+
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~--~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~   78 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARG--GF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH   78 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhc--CC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence            8889999999999999999999999999  55 999999999999999999987544322  455678899987655 88


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      ++|+|+|++.++++++|||||+++++++||++|+|||||++||++|++|++.+++++++|.++|+|.+
T Consensus        79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             CCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999963

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=3.2e-38  Score=255.92  Aligned_cols=150  Identities=49%  Similarity=0.824  Sum_probs=130.5

Q ss_pred             EEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCC-CccCCCCCCC
Q psy10359         41 WFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG-ASIYGDKFED  119 (249)
Q Consensus        41 ~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~-~~~~~~~~~~  119 (249)
                      ||+|++++  .|+|+||||++.||++|+||++||+.  ++ |+++.|||++|++++|+|++......+. ....+.++++
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~--~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~   75 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTS--GF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD   75 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHT--TS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcc--cc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence            68888543  99999999999999999999999998  55 9999999999999999999875433111 1233456888


Q ss_pred             Ccc--cCCCCcceEEEEecCC--CCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        120 ENF--KLSHYGSGWLSMANAG--KDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       120 e~~--~~~h~~~G~vsm~~~~--~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      |..  .+.| .+|+|+|++.+  +++++|||||+|++.++||++|+|||+|++||++|++|++.++++  +|.++|+|.+
T Consensus        76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~I~~  152 (155)
T PF00160_consen   76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVTISS  152 (155)
T ss_dssp             SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEEEEE
T ss_pred             ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeEEEE
Confidence            874  4555 79999999976  788999999999999999999999999999999999999998876  9999999999


Q ss_pred             eee
Q psy10359        196 CGH  198 (249)
Q Consensus       196 cg~  198 (249)
                      |||
T Consensus       153 cgv  155 (155)
T PF00160_consen  153 CGV  155 (155)
T ss_dssp             EEE
T ss_pred             eEC
Confidence            996

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415|consensus

Probab=100.00  E-value=3.5e-36  Score=263.53  Aligned_cols=163  Identities=42%  Similarity=0.650  Sum_probs=148.5

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC-------CCCCCc
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD-------KFEDEN  121 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~-------~~~~e~  121 (249)
                      |++|+|+|.||.+.+|.+|.||++||+-++   |+.+.||.|..+|.+|.|||+ |.|.||.++|+.       .|+.|.
T Consensus         7 TtlGDlvIDLf~~erP~~clNFLKLCk~KY---YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE~   82 (479)
T KOG0415|consen    7 TTLGDLVIDLFVKERPRTCLNFLKLCKIKY---YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAEF   82 (479)
T ss_pred             eecccEEeeeecccCcHHHHHHHHHHhHhh---cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhhh
Confidence            999999999999999999999999999966   999999999999999999999 789999998874       356665


Q ss_pred             c-cCCCCcceEEEEecCCCCCCCceEEEEcCC-CCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeeee
Q psy10359        122 F-KLSHYGSGWLSMANAGKDTNGSQFFITTKK-TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHT  199 (249)
Q Consensus       122 ~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~-~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l  199 (249)
                      . .++|...|+|||++.|.+.+||||||||++ ...||++|+|||+|++|+|+|.+|+.+-++++++|.++|+|.+.-+|
T Consensus        83 ~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiL  162 (479)
T KOG0415|consen   83 LPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIIL  162 (479)
T ss_pred             cccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEe
Confidence            4 699999999999999999999999999987 56999999999999999999999999999999999999999997777


Q ss_pred             ccCCCchhhhhhhccccC
Q psy10359        200 PVEEPFSDVVKKIESSET  217 (249)
Q Consensus       200 ~~~~p~~~vv~~iE~~~~  217 (249)
                        ++||.+-....++...
T Consensus       163 --dDPFddpp~l~~p~rs  178 (479)
T KOG0415|consen  163 --DDPFDDPPDLAEPMRS  178 (479)
T ss_pred             --cCCCCCchhhccCCCC
Confidence              7899877666655443

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=6.6e-36  Score=247.18  Aligned_cols=129  Identities=36%  Similarity=0.561  Sum_probs=109.4

Q ss_pred             ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCC--------------------C
Q psy10359         48 EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDG--------------------T  107 (249)
Q Consensus        48 ~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~--------------------~  107 (249)
                      .|+.|+|+|+||++.||+||+||++||+.  |+ |+++.|||++++||+||||+...+.                    .
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p~e~~~~~   79 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVER--GF-YDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIPLEIKPEG   79 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHh--CC-cCCCEEEEecCCcEEEecCCCCCCCCcccccccccccccceecccC
Confidence            38899999999999999999999999999  66 9999999999999999999874310                    1


Q ss_pred             CCCccCCCCC-----CCCcccCCCCcceEEEEecCC--CCCCCceEEEEcC-------CCCCCCCCceEEEEEEccHHHH
Q psy10359        108 GGASIYGDKF-----EDENFKLSHYGSGWLSMANAG--KDTNGSQFFITTK-------KTPWLDGRHVVFGKVITGGDIV  173 (249)
Q Consensus       108 ~~~~~~~~~~-----~~e~~~~~h~~~G~vsm~~~~--~~~~~SqFfItl~-------~~~~ld~~~~vFG~Vi~G~~vl  173 (249)
                      .+.+.++..+     .++...+.|+.+|+|+|++.+  +++++|||||++.       ++++||++|+|||||++|||||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl  159 (176)
T cd01924          80 QKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDIL  159 (176)
T ss_pred             CCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHH
Confidence            1223444433     245566778889999999987  6999999999998       7899999999999999999999


Q ss_pred             HHHHhC
Q psy10359        174 KKIESS  179 (249)
Q Consensus       174 ~~I~~~  179 (249)
                      ++|+..
T Consensus       160 ~~I~~g  165 (176)
T cd01924         160 RELKVG  165 (176)
T ss_pred             HhhcCC
Confidence            999753

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0880|consensus

Probab=98.17  E-value=8.5e-07  Score=73.42  Aligned_cols=43  Identities=49%  Similarity=0.728  Sum_probs=39.5

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeeecCCC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDA  248 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~~~~~  248 (249)
                      -++|++||+++|+.+|+|+++|+|++||+||++.++.++++.+
T Consensus       173 mdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~~~~~~~~~~  215 (217)
T KOG0880|consen  173 MDVVRKIENVKTDERDKPLEDVVIANCGELPVEYLESVEDAQN  215 (217)
T ss_pred             HHHHHHHHhcccCCCCCccccEEEeecCcccccchhhhhhhhc
Confidence            4678999999999999999999999999999999999987653

>KOG0882|consensus

Probab=97.61  E-value=6.4e-05  Score=69.44  Aligned_cols=145  Identities=22%  Similarity=0.294  Sum_probs=115.6

Q ss_pred             eeee----eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCc-cCCC----CCCC
Q psy10359         49 VNVG----KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS-IYGD----KFED  119 (249)
Q Consensus        49 t~~G----~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~-~~~~----~~~~  119 (249)
                      +..|    -|.|+++.+-.|.-++-|...|.-  ++ +++..|.|+...+++|.||..-....+|.. .|..    .+++
T Consensus       105 ~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~--~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr  181 (558)
T KOG0882|consen  105 TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD--GY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR  181 (558)
T ss_pred             cCCCCeeeeEEeecccCCCcEEECCcCCcCcc--ce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcc
Confidence            4566    999999999999999999999999  55 999999999999999999865433323321 1111    1222


Q ss_pred             --CcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeee
Q psy10359        120 --ENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG  197 (249)
Q Consensus       120 --e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg  197 (249)
                        .+..++|. .-++..........+-+|.+.-...+.+..+..|||++.+|.++++.|....++....|..++.|.+..
T Consensus       182 ~~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve  260 (558)
T KOG0882|consen  182 TNLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE  260 (558)
T ss_pred             cccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence              34556665 666777666666677889999988888999999999999999999999999999999999999998853

>KOG0546|consensus

Probab=97.07  E-value=0.00037  Score=62.91  Aligned_cols=35  Identities=37%  Similarity=0.622  Sum_probs=31.8

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEP  240 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~  240 (249)
                      ..|||.||+.+++..++|+.+|+|.|||+|+.+..
T Consensus       149 ~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~  183 (372)
T KOG0546|consen  149 KEVVREIENLETDEESKPLADVVISDCGELVKKSK  183 (372)
T ss_pred             hhHHHHHhccccccCCCCccceEeccccccccccc
Confidence            46899999999999999999999999999988733

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.63  E-value=0.0085  Score=56.42  Aligned_cols=102  Identities=22%  Similarity=0.388  Sum_probs=65.9

Q ss_pred             eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceEE
Q psy10359         53 KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWL  132 (249)
Q Consensus        53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v  132 (249)
                      .+.+||.. .+|.++++|+.+.+.  |. +   .+.+....|+.            .....+...+.|+...+  .+|+|
T Consensus       202 y~evE~~~-~~p~s~EH~la~~~~--G~-~---~Vd~~tsTfi~------------d~~L~g~~~p~En~~~R--~rGtV  260 (503)
T TIGR03268       202 YVEVELDP-NAPVSVEHFLALMED--GT-F---RVDYRTSTFIS------------DDSLRGLDKPEENIEKR--RRGAV  260 (503)
T ss_pred             EEEEEEcC-CCChhHHHHHHHHhC--Ce-E---EEeeeecceEe------------cccccCccCCccccCcc--cceeE
Confidence            56677644 569999999999888  43 1   11111111111            11222445566654433  48999


Q ss_pred             EEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHh
Q psy10359        133 SMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIES  178 (249)
Q Consensus       133 sm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~  178 (249)
                      .+.+.|...  -.-||-..+.+ ..-.|+|+|+|+.|||+++--+.
T Consensus       261 TVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       261 TVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             EEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence            999987653  35888887765 33469999999999999875543

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.60  E-value=0.0079  Score=56.77  Aligned_cols=102  Identities=23%  Similarity=0.428  Sum_probs=66.2

Q ss_pred             eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceEE
Q psy10359         53 KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWL  132 (249)
Q Consensus        53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~v  132 (249)
                      .+.+||.. .+|.++++|+.+.+.  |. +   .+.+....|+.            ..+..|...+.|+...+  .+|+|
T Consensus       205 y~eve~~~-~~p~s~EH~la~~~~--G~-f---~Vd~~tstfI~------------d~~L~g~~~p~En~~~R--~~GtV  263 (508)
T PRK00969        205 YVEVELDP-GAPKSVEHFLALLED--GT-F---EVDFETSTFIA------------DDRLQGLKIPEENFEPR--RRGTV  263 (508)
T ss_pred             EEEEEEcC-CCCchHHHHHHHHhC--Ce-E---EEeeeecceEe------------eccccCccCCccccCcc--ccceE
Confidence            56678754 469999999999988  43 1   11111111111            11222445566665433  48999


Q ss_pred             EEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHh
Q psy10359        133 SMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIES  178 (249)
Q Consensus       133 sm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~  178 (249)
                      .+.+.|.+.  -.-||-..+-+ ..-.|+|+|+|+.|||+++--+.
T Consensus       264 TVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        264 TVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             EEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence            999987653  35888888765 33469999999999999875443

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.81  E-value=0.092  Score=49.66  Aligned_cols=115  Identities=19%  Similarity=0.280  Sum_probs=63.0

Q ss_pred             eeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceE
Q psy10359         52 GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGW  131 (249)
Q Consensus        52 G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~  131 (249)
                      -=|.|+||.+.||+|+.-|+++.--...- ---..+|=..++..+-=|+..          +...+-+||..-....+|.
T Consensus       375 ~vi~IeLydd~AP~s~~yFRk~tGL~~~~-VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~~V~ag~  443 (503)
T TIGR03268       375 KVIEIELYDDNAPRSVWYFRKFTGLKTKP-VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPEDKVEAGV  443 (503)
T ss_pred             hEEEEEEcccCCchHHHHHHHhcCCcccc-cceeEEEEEeCCeeEeccCch----------hccccCCCCCCCCccccce
Confidence            35889999999999999999986332210 112344444555333322221          1223444544444445677


Q ss_pred             EEEecCCCCCCCceEEEEc------CCCC-CCCCCceEEEEEEccHHHHHHHHhC
Q psy10359        132 LSMANAGKDTNGSQFFITT------KKTP-WLDGRHVVFGKVITGGDIVKKIESS  179 (249)
Q Consensus       132 vsm~~~~~~~~~SqFfItl------~~~~-~ld~~~~vFG~Vi~G~~vl~~I~~~  179 (249)
                      +++-|......|- --|-+      ++.. .+++.+ ++|||+++++.|+++...
T Consensus       444 IgvTN~a~k~~G~-IGVRl~d~defGPTGE~F~gTN-IiG~Vv~~~e~Lk~~KeG  496 (503)
T TIGR03268       444 IGVTNQACKHVGM-IGVRLEDSDEFGPTGEPFSGTN-IIGRVVEGMERLKGLKEG  496 (503)
T ss_pred             EeeechhhhcCce-EEEEccCCcccCCCCCCccCcc-eEEEecCChhHhcccccC
Confidence            7776543211110 11112      2222 344544 569999999999888653

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.77  E-value=0.02  Score=52.40  Aligned_cols=99  Identities=24%  Similarity=0.460  Sum_probs=65.5

Q ss_pred             eEEEEEeCCCCcchHHHHHHhhcCCCCC---ccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcc
Q psy10359         53 KIEIGLFGKTVPRTVQNFIELAKRPEGQ---GYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGS  129 (249)
Q Consensus        53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~---~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~  129 (249)
                      .+.++|.++ +|+++++|++|...  |.   .|.-..|.-                   ..+......+.|++.+..  +
T Consensus       204 y~eve~s~n-sP~saEH~lalmed--G~lri~~~tntfis-------------------~~~lq~~~~~~en~d~Re--r  259 (512)
T COG4070         204 YFEVELSRN-SPKSAEHFLALMED--GTLRIDVTTNTFIS-------------------DDTLQEEKVPEENFDLRE--R  259 (512)
T ss_pred             EEEEEeCCC-CchhHHHHHHHhhc--ceEEEEEeccceee-------------------ccccccccCChhhhhhhh--c
Confidence            567787554 69999999999877  43   122222211                   122234556777766654  8


Q ss_pred             eEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHh
Q psy10359        130 GWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIES  178 (249)
Q Consensus       130 G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~  178 (249)
                      |.++..|.|-++  -.-||--.+-+. --.|.|.|||++||++++--..
T Consensus       260 G~iTvRn~Gvge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         260 GAITVRNVGVGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             ceEEEEeeeccc--ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            999999976543  357777766542 2368999999999998875543

>PRK00969 hypothetical protein; Provisional

Probab=95.02  E-value=0.23  Score=47.12  Aligned_cols=114  Identities=20%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             eeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcceE
Q psy10359         52 GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGW  131 (249)
Q Consensus        52 G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~  131 (249)
                      -=|.|+||.+.||+|+.-|+++.--...- ---..+|=..++.++-=|+..          +...+-+||..-....+|.
T Consensus       378 ~vi~IeLydd~AP~s~~yFR~~tGL~~~~-VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~  446 (508)
T PRK00969        378 KLIEIELYDDKAPRTVWYFRKVTGLKTKP-VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE  446 (508)
T ss_pred             HEEEEEEcCcCCchHHHHHHHhcCCcccc-cceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence            35889999999999999999987332200 112344445555444323222          1223444555444555677


Q ss_pred             EEEecCCCCCCCceEEEEc------CCCC-CCCCCceEEEEEEccHHHHHHHHhC
Q psy10359        132 LSMANAGKDTNGSQFFITT------KKTP-WLDGRHVVFGKVITGGDIVKKIESS  179 (249)
Q Consensus       132 vsm~~~~~~~~~SqFfItl------~~~~-~ld~~~~vFG~Vi~G~~vl~~I~~~  179 (249)
                      +++-|......|- --|-+      ++.. .+++. -++|||+ +++-|+++...
T Consensus       447 IgvTN~a~k~~G~-iGVR~~d~d~fGPTGE~F~gT-NIIGrVv-~~e~Lk~lKeG  498 (508)
T PRK00969        447 IGVTNMAAKYKGM-IGVRLSDNDEFGPTGEPFEGT-NIIGRVV-NLEKLKKLKEG  498 (508)
T ss_pred             EeeechhhhcCce-EEEEccCCcccCCCCCCccCc-eeEEEec-ChHHhcccccC
Confidence            7776543211110 11112      2222 24444 4679999 99998888653

>KOG0879|consensus

Probab=94.69  E-value=0.026  Score=44.39  Aligned_cols=30  Identities=33%  Similarity=0.522  Sum_probs=27.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      ..++|+||+.++..++||.-+|+|+.||++
T Consensus       148 lli~rkIEnvp~G~NnkPKl~v~i~qCGem  177 (177)
T KOG0879|consen  148 LLIMRKIENVPTGPNNKPKLPVVIVQCGEM  177 (177)
T ss_pred             hhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence            357999999999999999999999999984

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=94.34  E-value=0.033  Score=46.51  Aligned_cols=30  Identities=37%  Similarity=0.530  Sum_probs=27.3

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+||++
T Consensus       157 ~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~  186 (186)
T PLN03149        157 LLVVRKIENVATGPNNRPKLACVISECGEM  186 (186)
T ss_pred             HHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence            468899999999888999999999999985

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=93.77  E-value=0.22  Score=45.87  Aligned_cols=24  Identities=33%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             eEEEEEeCCCCcchHHHHHHhhcC
Q psy10359         53 KIEIGLFGKTVPRTVQNFIELAKR   76 (249)
Q Consensus        53 ~i~ieL~~~~aP~t~~nF~~l~~~   76 (249)
                      -|.||||.+.||.++..|+++..-
T Consensus       377 iieIELyed~APrSv~yFRr~t~l  400 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTGL  400 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhccc
Confidence            589999999999999999988643

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=93.21  E-value=0.29  Score=39.22  Aligned_cols=106  Identities=18%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             eEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecC--ceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCcce
Q psy10359         53 KIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD--FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSG  130 (249)
Q Consensus        53 ~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G  130 (249)
                      .++.+|..|.||+||+.|.+.-   .   |.+..+|-...+  .++.-++..           ....+.||... +..+|
T Consensus         9 ~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~T~-~P~pG   70 (147)
T PF12903_consen    9 SFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENHTV-TPIPG   70 (147)
T ss_dssp             EEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SEES-S--TT
T ss_pred             EEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcCcc-cCCCC
Confidence            5788999999999999999986   1   333434333322  122223221           01123344333 22367


Q ss_pred             EEEEe--cC-CCC--CC-CceEEEEcCCCC--------CCCCCceEEEEEEccHHHHHHHHh
Q psy10359        131 WLSMA--NA-GKD--TN-GSQFFITTKKTP--------WLDGRHVVFGKVITGGDIVKKIES  178 (249)
Q Consensus       131 ~vsm~--~~-~~~--~~-~SqFfItl~~~~--------~ld~~~~vFG~Vi~G~~vl~~I~~  178 (249)
                      -|.+.  .. ...  .. =++.-|.+....        ++-  -.+|++|++|++-+.++-+
T Consensus        71 di~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~--GN~FatI~egle~la~~~~  130 (147)
T PF12903_consen   71 DILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLP--GNHFATITEGLEELAEACR  130 (147)
T ss_dssp             EEEEE-----------E-EEEEEEE-SSS---EETTTEE----EEEEEEEEESHHHHHHHHH
T ss_pred             cEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccc--eeEEEEEcCCHHHHHHHHH
Confidence            77665  11 111  11 133333333322        233  3789999999997766543

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

>PTZ00221 cyclophilin; Provisional

Probab=92.56  E-value=0.1  Score=45.52  Aligned_cols=31  Identities=32%  Similarity=0.464  Sum_probs=28.4

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++..++|.++|+|.+||++.
T Consensus       190 mdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~  220 (249)
T PTZ00221        190 LSLLEKLESLPLDDVGRPLLPVTVSFCGALT  220 (249)
T ss_pred             HHHHHHHHcCCcCCCCCCCCCeEEEECeEec
Confidence            4699999999998889999999999999994

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=90.81  E-value=0.2  Score=40.76  Aligned_cols=27  Identities=48%  Similarity=0.796  Sum_probs=24.9

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCG  233 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g  233 (249)
                      .+++++|++.+++ +++|.++|+|.+||
T Consensus       138 ~dvl~~i~~~~~~-~~~P~~~i~I~~cG  164 (164)
T cd01926         138 MDVVKKIENVGSG-NGKPKKKVVIADCG  164 (164)
T ss_pred             HHHHHHHHcCCCC-CCCCcCCeEEEECC
Confidence            4689999999998 88999999999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PTZ00060 cyclophilin; Provisional

Probab=89.62  E-value=0.24  Score=41.16  Aligned_cols=29  Identities=31%  Similarity=0.559  Sum_probs=25.2

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++..+. +++|.++|+|.+||+|
T Consensus       154 ~dvl~~I~~~~~~-~~~P~~~v~I~~cg~~  182 (183)
T PTZ00060        154 MEVVRAMEKEGTQ-SGYPKKPVVVTDCGEL  182 (183)
T ss_pred             HHHHHHHHccCCC-CCCCcCCeEEEEeEEc
Confidence            5789999987774 5799999999999987

>KOG0111|consensus

Probab=88.97  E-value=0.29  Score=41.73  Aligned_cols=29  Identities=34%  Similarity=0.683  Sum_probs=25.6

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      -+|||++|.+-+.+ .+|.++|+|.+||+|
T Consensus       269 ~~vvrq~e~qgsks-gkp~qkv~i~~cge~  297 (298)
T KOG0111|consen  269 MNVVRQVEQQGSKS-GKPQQKVKIVECGEI  297 (298)
T ss_pred             HHHHHHHHhccCCC-CCcceEEEEEecccc
Confidence            47899999888754 799999999999997

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=87.39  E-value=0.52  Score=38.43  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.+++|.++|+|.+|+.+.
T Consensus       130 ~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~  160 (166)
T cd01921         130 FDVLEKINDAIVDDDGRPLKDIRIKHTHILD  160 (166)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCeEEEEEEEEC
Confidence            4689999999998889999999999998883

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=84.77  E-value=0.8  Score=37.08  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=27.9

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.+++|+++|+|.+|+.+-
T Consensus       124 ~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923         124 LETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            5789999999998889999999999998873

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=82.26  E-value=0.99  Score=37.76  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=26.6

Q ss_pred             hhhhhhhccccCCC----CCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDG----RDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~----~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.    .++|.++|+|.+|+.+|
T Consensus       156 ~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~  190 (190)
T PRK10903        156 MDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP  190 (190)
T ss_pred             HHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence            56899999988865    57999999999998775

>KOG0881|consensus

Probab=81.58  E-value=1.2  Score=34.83  Aligned_cols=27  Identities=37%  Similarity=0.657  Sum_probs=24.0

Q ss_pred             hhhhhhccccCCCCCCCccceEEeecC
Q psy10359        207 DVVKKIESSETDGRDRPVQGVTIVDCG  233 (249)
Q Consensus       207 ~vv~~iE~~~~~~~d~P~~~v~i~~~g  233 (249)
                      .|+++|...+++.+|||+.+|+|+.+-
T Consensus       135 ~vikr~G~v~Td~~DRPi~~~kIika~  161 (164)
T KOG0881|consen  135 EVIKRMGMVETDNSDRPIDEVKIIKAY  161 (164)
T ss_pred             HHHHhhcceecCCCCCCccceeeEeee
Confidence            568888999999999999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	249
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		6e-62
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		4e-61
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		3e-60
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		1e-59
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		4e-59
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		4e-54
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		9e-54
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		1e-46
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		5e-43
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		3e-42
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		1e-37
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		1e-36
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		3e-36
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		4e-36
1dyw_A	173	Biochemical And Structural Characterization Of A Di		4e-36
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		5e-36
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		5e-36
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		6e-36
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		7e-36
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		8e-36
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		8e-36
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		9e-36
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		9e-36
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-35
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		1e-35
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		1e-35
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-35
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		1e-35
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		1e-35
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		2e-35
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		2e-35
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		2e-35
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		2e-35
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		2e-35
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		2e-35
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		2e-35
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		3e-35
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		3e-35
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		4e-35
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		5e-35
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		6e-35
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		8e-35
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		1e-34
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-34
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		2e-34
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		6e-34
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		9e-34
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-33
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		3e-33
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		3e-32
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		2e-31
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		3e-31
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		3e-31
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		3e-31
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		1e-30
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		2e-30
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		6e-30
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		8e-26
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		5e-24
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		1e-23
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		4e-22
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-20
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-20
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		3e-20
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		1e-17
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		3e-15
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		6e-15
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		2e-08
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		1e-07
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		1e-07
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		2e-07
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		3e-06
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		3e-05
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		6e-04

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 115/175 (65%), Positives = 132/175 (75%)
Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           KGPKVTD V+F ++IG   +G+I IGLFGKTVP+T  NFIELAK+P+G+GY GSKFHRVI
Sbjct: 1   KGPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVI 60
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
            DFMIQ             SIYG+KF DENFKL HYG+GWLSMANAG DTNGSQFFITT 
Sbjct: 61  ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
           KTPWLDGRHVVFGK++ G D+V+KIE +E    DRP Q V I   GH  V+ PFS
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFS 175

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  231 bits (588), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/181 (61%), Positives = 141/181 (77%)
Query: 26  ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
           A ++  KGPKVT  V+F ++IG+ ++G++ IGLFGKTVP+TV NF+ LA   +G GYK S
Sbjct: 1   AMDEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 60
Query: 86  KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
           KFHRVIKDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct: 61  KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 120
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
           FFITT KT WLDG+HVVFGKV+ G ++V+K+E+++TDGRD+P++ VTI DCG   VE+PF
Sbjct: 121 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPF 180
Query: 206 S 206
           +
Sbjct: 181 A 181

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  228 bits (581), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 140/181 (77%)
Query: 26  ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
           A ++  K PKVT  V+F ++IG+ ++G++ IGLFGKTVP+TV NF+ LA   +G GYK S
Sbjct: 1   AMDEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 60
Query: 86  KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
           KFHRVIKDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct: 61  KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 120
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
           FFITT KT WLDG+HVVFGKV+ G ++V+K+E+++TDGRD+P++ VTI DCG   VE+PF
Sbjct: 121 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPF 180
Query: 206 S 206
           +
Sbjct: 181 A 181

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  226 bits (575), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 135/175 (77%)
Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           KGPKVT  V+F ++IG+ +VG++  GLFGKTVP+TV NF+ LA   +G GYK SKFHRVI
Sbjct: 10  KGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVI 69
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQFFITT 
Sbjct: 70  KDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTV 129
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
           KT WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ V I DCG   VE+PF+
Sbjct: 130 KTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFA 184

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  224 bits (570), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 134/174 (77%)
Query: 33  GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIK 92
           GPKVT  V+F ++IG+ +VG++  GLFGKTVP+TV NF+ LA   +G GYK SKFHRVIK
Sbjct: 1   GPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIK 60
Query: 93  DFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
           DFMIQ             SIYG++F DENFKL HYG GW+SMANAGKDTNGSQFFITT K
Sbjct: 61  DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 120
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFS 206
           T WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ V I DCG   VE+PF+
Sbjct: 121 TAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFA 174

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  207 bits (527), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 123/174 (70%)
Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           +GP VT  V+F ++IG+ +VG+I IGLFGK VP+TV+NF+ LA   +G GYKGSKFHRVI
Sbjct: 10  RGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVI 69
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFMIQ             SIYG+ F DENFKL HYG GW+SMANAG DTNGSQFFIT  
Sbjct: 70  KDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 129
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
           K  WLDG+HVVFGKVI G  +V  IE   TDG DRP+   +I++ G   V+ PF
Sbjct: 130 KPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDVKTPF 183

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  206 bits (524), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 103/174 (59%), Positives = 122/174 (70%)
Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           +GP VTD V+F ++IG+ +VG+I IGLFG  VP+TV+NF+ LA   +G GYKGS FHRVI
Sbjct: 2   RGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVI 61
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFMIQ             SIYG+ F DENFKL HYG GW+SMANAG DTNGSQFFIT  
Sbjct: 62  KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
           K  WLDG+HVVFGKV+ G  +V  IE   TDG DRP+   TIV+ G   V+ PF
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPF 175

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 117/164 (71%), Gaps = 1/164 (0%)
Query: 34  PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
           P VTD V+F I IG+  VG++ IGLFG  VP+TV+NF +LA    G GYKGS FHRVI++
Sbjct: 2   PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRN 61
Query: 94  FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQ             SIYG +F+DEN K+ H+  G +SMANAG ++NGSQFF+TT  T
Sbjct: 62  FMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPT 120
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDGRHVVFGKV+ G D+VKK+E+++T   D+P + V I DCG
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 89/164 (54%), Positives = 109/164 (66%), Gaps = 1/164 (0%)
Query: 34  PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
           P+VT  V+F + I    +G+I IGLFGK  P T +NF +L     G GYK S FHRVI++
Sbjct: 8   PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN 67
Query: 94  FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQ             SIYG+KF DEN  + H+  G LSMANAG +TNGSQFFITT  T
Sbjct: 68  FMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPT 126
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDGRHVVFGKV+ G D+V +IE ++T+  DRPV+ V IV  G
Sbjct: 127 PWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  168 bits (425), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 108/164 (65%), Gaps = 1/164 (0%)
Query: 34  PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
           P+VT  V+F + I    +G+I IGLFGK  P T +NF +L     G GYK S FHRVI++
Sbjct: 8   PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQN 67
Query: 94  FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQ             SIYG+KF DEN  + H+  G LSMANAG +TNGSQFFITT  T
Sbjct: 68  FMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPT 126
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDG HVVFGKV+ G D+V +IE ++T+  DRPV+ V IV  G
Sbjct: 127 PWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/173 (48%), Positives = 103/173 (59%), Gaps = 5/173 (2%)
Query: 30  VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK---RPEGQ--GYKG 84
           VA    V  +V+F + IG   VG+++I LF   VP+T +NF +      R +G   GYKG
Sbjct: 3   VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKG 62
Query: 85  SKFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
           S FHRVIKDFMIQ            ASIY   F DENFKL H   G LSMAN+G  TNG 
Sbjct: 63  STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122
Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           QFFIT  K  WLDG+HVVFGK+I G  +++KIE+  T   ++P   V I  CG
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Query: 30  VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHR 89
           +AK  +    V+  I+IG    G+I++ L    VP T +NF  L    +G G+KGS FHR
Sbjct: 4   IAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHR 63
Query: 90  VIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFIT 149
           +I  FM Q             SIYG KF+DENF L H G G LSMAN+G +TNGSQFF+T
Sbjct: 64  IIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLT 123
Query: 150 TKKTPWLDGRHVVFGKVITGGDIVKKIESSET-DGRDRPVQGVTIVDCG 197
             KT WLDG+HVVFG+V  G D++++IE+  + DG  +P Q V I DCG
Sbjct: 124 CDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCG 170

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 81/163 (49%), Positives = 99/163 (60%), Gaps = 3/163 (1%)
Query: 38  DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQ 97
           D+ +  +   E  VG+I   LF K VP+T +NF EL KRP G+GY+ S FHR+I +FMIQ
Sbjct: 8   DVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ 67
Query: 98  XXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLD 157
                        SIYGDKF DENF   H   G LSMANAG +TNGSQFFITT  T WLD
Sbjct: 68  GGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD 127
Query: 158 GRHVVFGKVI--TGGDIVKKIES-SETDGRDRPVQGVTIVDCG 197
           G+HVVFG+V       +VK+IE+   + G  R      IV+CG
Sbjct: 128 GKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 80/158 (50%), Positives = 95/158 (60%), Gaps = 1/158 (0%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+F I      +G I+  LF   VP+T  NF  L    +G GY GS FHRVI DFM+Q  
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG 63
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG KF DENF+L H   G LSMANAG +TNGSQFFITT  T WLDG+
Sbjct: 64  DFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGK 123
Query: 160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           HVVFG+VI G ++VK IE +E  G  +P   + I  CG
Sbjct: 124 HVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCG 160

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  147 bits (372), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIK 92
           V+F I IG    G+I + L+   VP+T  NF  L     G G       +KGSKFHR+I 
Sbjct: 6   VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 93  DFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
           +FMIQ             SIYG+KF DENFK  H G G LSMANAG +TNGSQFF+ T K
Sbjct: 66  NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125
Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           T WLDG+HVVFG+V+ G D+VK +ES+ +    +PV+   I DCG 
Sbjct: 126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCGQ 170

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 78/159 (49%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+  I+IG    G+I++ L    VP T +NF  L    +G G+KGS FHR+I  FM Q  
Sbjct: 6   VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGG 65
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG KF+DENF L H G G LSMAN+G +TNGSQFF+T  KT WLDG+
Sbjct: 66  DFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGK 125
Query: 160 HVVFGKVITGGDIVKKIESSET-DGRDRPVQGVTIVDCG 197
           HVVFG+V  G D++++IE+  + DG  +P Q V I DCG
Sbjct: 126 HVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCG 162

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  147 bits (371), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 102/172 (59%), Gaps = 8/172 (4%)
Query: 34  PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGS 85
           P+ +    F I+I    VG+I   LF    P+T +NF+ L    +G G        YKGS
Sbjct: 16  PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75
Query: 86  KFHRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
            FHRV+K+FMIQ             SIYG  F+DENF L H  +  LSMAN GK TNGSQ
Sbjct: 76  TFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQ 135
Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           FFITTK  P LDG HVVFG VI+G +++++IE+ +TD   RP   V ++DCG
Sbjct: 136 FFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+F I I +   G+I   L+ + VP+T +NF ELA    G GYK S FHRVI  FM+Q  
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG+KF DENF++ H   G LSMANAG +TNGSQFFITT  T WLDG+
Sbjct: 65  DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 124
Query: 160 HVVFGKVITGGDIVKKIES-SETDGRDRPVQGVTIVDCG 197
           HVVFG+VI G DIV+K+E      G+      + I DCG
Sbjct: 125 HVVFGEVIEGLDIVRKVEGKGSASGKTNAT--IKITDCG 161

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 10  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 69
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 70  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 129
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 130 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 171

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  146 bits (369), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+F I I +   G+I   L+ + VP+T +NF ELA    G GYK S FHRVI  FM+Q  
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG+KF DENF++ H   G LSMANAG +TNGSQFFITT  T WLDG+
Sbjct: 66  DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 125
Query: 160 HVVFGKVITGGDIVKKIES-SETDGRDRPVQGVTIVDCG 197
           HVVFG+VI G DIV+K+E      G+      + I DCG
Sbjct: 126 HVVFGEVIEGLDIVRKVEGKGSASGKTNAT--IKITDCG 162

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 21  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 80
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 81  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 140
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 141 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 182

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 162

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  146 bits (368), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/159 (47%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+F +   E ++G+I + L    VP+T +NF  L +RP+G+GYKGS FHR+I  FM+Q  
Sbjct: 30  VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGG 89
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG+KF DENF+L H   G LSMAN G  TNGSQFFIT  KT WLD +
Sbjct: 90  DYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEK 149
Query: 160 HVVFGKVITGGDIVKKIESSETD-GRDRPVQGVTIVDCG 197
           HVVFG+V+ G D+V KI    ++ G+ +    + I DCG
Sbjct: 150 HVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
           +V+  +      +G++ + L    VP+T +NF  L    +G GYKGS FHRVI  FM Q 
Sbjct: 6   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 65
Query: 99  XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
                       SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 66  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 125
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           +HVVFG VI G D+VKKIES  +    R  + + I DCG 
Sbjct: 126 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 164

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
           +V+  +      +G++ + L    VP+T +NF  L    +G GYKGS FHRVI  FM Q 
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64
Query: 99  XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
                       SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 65  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           +HVVFG VI G D+VKKIES  +    R  + + I DCG 
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 163

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
           +V+  +      +G++ + L    VP+T +NF  L    +G GYKGS FHRVI  FM Q 
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64
Query: 99  XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
                       SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 65  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           +HVVFG VI G D+VKKIES  +    R  + + I DCG 
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 163

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 95/160 (59%), Gaps = 1/160 (0%)
Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQX 98
           +V+  +      +G++ + L    VP+T +NF  L    +G GYKGS FHRVI  FM Q 
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63
Query: 99  XXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
                       SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 64  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123
Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           +HVVFG VI G D+VKKIES  +    R  + + I DCG 
Sbjct: 124 KHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDCGQ 162

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G L+MANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGXHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  145 bits (365), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FH++I  FM
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 62  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 122 LDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 163

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 79/162 (48%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 6   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 65
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 66  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           LDG HVVFGKV  G +IV+ +E   +    +  + +TI DCG
Sbjct: 126 LDGXHVVFGKVKEGMNIVEAMERFGSR-NGKTSKKITIADCG 166

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  144 bits (364), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 98/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFG V  G +IV+ +E   +    +  + +TI DCG 
Sbjct: 121 LDGKHVVFGAVKEGMNIVEAMERFGSR-NGKTSKKITIADCGQ 162

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 99/163 (60%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  FM
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LSMANAG +TNGSQFFI T KT W
Sbjct: 61  CQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+ ++   +    +  + +TI DCG 
Sbjct: 121 LDGKHVVFGKVKEGMNIVEAMKRFGSR-NGKTSKKITIADCGQ 162

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
            +F I I     G++   LF    P+T +NF  L    +G G        YK   FHRV+
Sbjct: 29  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFM+Q             SIYG  FEDE+F + H  +  LSMAN GKDTNGSQFFITTK
Sbjct: 89  KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITTK 148
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
            TP LDG HVVFG+VI+G ++V++IE+ +TD   +P   V I+ CG
Sbjct: 149 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 194

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  144 bits (362), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
           V+F + IG   VG+I + LF   VP+T +NF  L    +G G        +KG  FHR+I
Sbjct: 18  VFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRII 77
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           K FMIQ             SIYG+KFEDENF   H   G LSMANAG +TNGSQFFITT 
Sbjct: 78  KKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTV 137
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
            TP LDG+HVVFG+VI G  + K +E+ E  G ++P +   I +CG
Sbjct: 138 PTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECG 182

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 28  EKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKF 87
           E +AK  +    V+  I+IG    G+I+  L    VP T +NF  L    +G G+KGS F
Sbjct: 3   EPIAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSF 62
Query: 88  HRVIKDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFF 147
           HR+I  F  Q             SIYG KF+DENF L H G G LS AN+G +TNGSQFF
Sbjct: 63  HRIIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFF 122
Query: 148 ITTKKTPWLDGRHVVFGKVITGGDIVKKIESSET-DGRDRPVQGVTIVDCG 197
           +T  KT WLDG+HVVFG+V  G D++++IE+  + DG  +P Q V I DCG
Sbjct: 123 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDG--KPKQKVIIADCG 171

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 89/139 (64%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+F ++     +G++   L+   VP+T +NF  L    +G GY GS FHRVI DFM+Q  
Sbjct: 4   VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGG 63
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG KF DENFK  H   G LSMANAG +TNGSQFFITT   PWLDG+
Sbjct: 64  DFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGK 123
Query: 160 HVVFGKVITGGDIVKKIES 178
           HVVFG+V+ G DIVKK+ES
Sbjct: 124 HVVFGEVVDGYDIVKKVES 142

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  142 bits (359), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
            +F I I     G++   LF    P+T +NF  L    +G G        YK   FHRV+
Sbjct: 12  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 71
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFM+Q             SIYG  FEDE+F + H     LSMAN GKDTNGSQFFITTK
Sbjct: 72  KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
            TP LDG HVVFG+VI+G ++V++IE+ +TD   +P   V I+ CG
Sbjct: 132 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
            +F I I     G++   LF    P+T +NF  L    +G G        YK   FHRV+
Sbjct: 12  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVV 71
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFM+Q             SIYG  FEDE+F + H     LSMAN GKDTNGSQFFITTK
Sbjct: 72  KDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTK 131
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
            TP LDG HVVFG+VI+G ++V++IE+ +TD   +P   V I+ CG
Sbjct: 132 PTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  140 bits (353), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
Query: 36  VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFM 95
           V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKGS FHR+I  F 
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX 60
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
            Q             SIYG+KFEDENF L H G G LS ANAG +TNGSQFFI T KT W
Sbjct: 61  CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
Query: 156 LDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH 198
           LDG+HVVFGKV  G +IV+  E   +    +  + +TI DCG 
Sbjct: 121 LDGKHVVFGKVKEGXNIVEAXERFGSR-NGKTSKKITIADCGQ 162

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 72/139 (51%), Positives = 88/139 (63%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           V+F I+IG  + G+I + L    VPRT +NF  L     G GY    FHRVI  FM Q  
Sbjct: 13  VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGG 72
Query: 100 XXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
                      SIYG KF+DENF+L H G G LSMAN+G +TNGSQFFI T K  WLDG+
Sbjct: 73  DFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGK 132
Query: 160 HVVFGKVITGGDIVKKIES 178
           HVVFG+V+ G ++VKK+ES
Sbjct: 133 HVVFGRVVDGQNVVKKMES 151

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 77/166 (46%), Positives = 94/166 (56%), Gaps = 8/166 (4%)
Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVI 91
           +V+F I IG+   G+I + LF   VP T +NF  L    +G G       Y GS FHR+I
Sbjct: 21  VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
             FMIQ             SIYG KF DENF  +H     LSMANAG +TNGSQFFITT 
Sbjct: 81  PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
             PWLDG+HVVFGKV+ G ++VK IE   +    +P + V I   G
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKPTKSVCITASG 185

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/177 (45%), Positives = 100/177 (56%), Gaps = 17/177 (9%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIK 92
           V+F I I     G+I + L+  TVP+T +NF  L    +G+G       YK S FHRVI 
Sbjct: 10  VFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIP 69
Query: 93  DFMIQXXXXXXXXXXXXASIYGDKFEDENFKLS---HYGSGWLSMANAGKDTNGSQFFIT 149
           +FMIQ             SIYG  F DE+F      H G G LSMANAG +TNGSQFFI 
Sbjct: 70  NFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFIC 129
Query: 150 TKKTPWLDGRHVVFGKVITGGDIVKKIE---SSETDGRDRPVQGVTIVDCGHTPVEE 203
           T  TPWLDG+HVVFG+VI G D+VKK+E   SS    R R    + + DCG    ++
Sbjct: 130 TAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSR----IVVSDCGEVAADK 182

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 99/166 (59%), Gaps = 2/166 (1%)
Query: 33  GPKVTD-IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           GP +T+ +V+F +      +G+I + LF   VPRT +NF  L    +G G+K S FHRVI
Sbjct: 1   GPHMTNPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVI 60
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
            DF+ Q             SIYGDKFEDENF + H G G LSMAN G++TN SQF IT K
Sbjct: 61  PDFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLK 120
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           K   LD +HVVFG V  G D VKKIES  +  +    + +TI +CG
Sbjct: 121 KAEHLDFKHVVFGFVKDGMDTVKKIESFGSP-KGSVCRRITITECG 165

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 95/166 (57%), Gaps = 8/166 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSKFHRVI 91
           V+  + I     G+I + L+    PRT  NF+ L     G G        YKGS FHRVI
Sbjct: 9   VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVI 68
Query: 92  KDFMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           K+FMIQ             SIYG  F+DE F + H     +SMAN G +TNGSQFFITT 
Sbjct: 69  KNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTT 128
Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
             P L+  HVVFGKV++G ++V KIE  +T+ ++RP+  V I++CG
Sbjct: 129 PAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 5/148 (3%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
           E ++G I + L+ K  P+T +NF ELA+R     Y G+KFHR+IKDFMIQ          
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 108 XXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
             ASIYG +FEDE +  L   G+G L+MANAG DTNGSQFF+T   T WLDG+H +FG+V
Sbjct: 74  G-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
             G  +V ++   ET+ +DRPV  V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 5/148 (3%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
           E ++G I + L+ K  P+T +NF ELA+R     Y G+KFHR+IKDFMIQ          
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 108 XXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
             ASIYG +FEDE +  L   G+G L+MANAG DTNGSQFF+T   T WLDG+H +FG+V
Sbjct: 74  G-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
             G  +V ++   ET+ +DRPV  V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/148 (48%), Positives = 95/148 (64%), Gaps = 5/148 (3%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
           E ++G I + L+ K  P+T +NF ELA+R     Y G+KFHR+IKDFMIQ          
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPTGTGRG 73
Query: 108 XXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
             ASIYG +FEDE +  L   G+G L+MANAG DTNGSQFF+T   T WLDG+H +FG+V
Sbjct: 74  G-ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132
Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
             G  +V ++   ET+ +DRPV  V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 88/164 (53%), Gaps = 7/164 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA------KRPEGQGYKGSKFHRVIKD 93
           V+F I I   N G+I   LF    PRT +NF  L        R +   YK S FHR+I  
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 94  FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FM Q             SIYG  F DENF + H   G LSMANAG +TN SQFFIT    
Sbjct: 66  FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPC 125
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDG+HVVFGKVI G ++V+++E  E        + V I DCG
Sbjct: 126 PWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITDCG 168

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  129 bits (323), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/167 (43%), Positives = 99/167 (59%), Gaps = 8/167 (4%)
Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAK-----RPEGQGYKGSKFHRVIKD 93
           +V+  I +G   +GK +  LF   VP+T +NF +             GYK + FHRVIK+
Sbjct: 61  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 120
Query: 94  FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQ             SIYG+KF+DENF + H   G LSMAN+G +TNG QFFITTKK 
Sbjct: 121 FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 180
Query: 154 PWLDGRHVVFGKVITGGD--IVKKIES-SETDGRDRPVQGVTIVDCG 197
            WLDG++VVFG++I      ++KKIE+ S T    +P   + +V+CG
Sbjct: 181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 87/164 (53%), Gaps = 7/164 (4%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA------KRPEGQGYKGSKFHRVIKD 93
           V+F I I   N G+I   LF    PRT +NF  L        R +   YK S FHR+I  
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQ 65
Query: 94  FMIQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FM Q             SIYG  F DENF + H   G LSMANAG +TN SQF IT    
Sbjct: 66  FMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLVPC 125
Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDG+HVVFGKVI G ++V+++E  E        + V I DCG
Sbjct: 126 PWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITDCG 168

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 84/146 (57%), Gaps = 5/146 (3%)
Query: 51  VGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXXA 110
           +G I I LF K   +TVQNF   +       Y    FHRVIK FM+Q             
Sbjct: 14  MGDIHISLFYKECKKTVQNF---SVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTGG-E 69
Query: 111 SIYGDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG 169
           SI+G++FEDE F  L+H     +SMAN G +TNGSQFFITT   PWLD +H VFGKV  G
Sbjct: 70  SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQG 129
Query: 170 GDIVKKIESSETDGRDRPVQGVTIVD 195
             IV  IE   TD RD+P++ + I++
Sbjct: 130 SKIVLDIEKVRTDKRDKPLEDIKILN 155

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/168 (40%), Positives = 96/168 (57%), Gaps = 12/168 (7%)
Query: 31  AKGPK-VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHR 89
           A+GPK V+D       +G+     I   LF    P+TV+NF   ++      Y G  FHR
Sbjct: 14  AEGPKRVSDSAIIHTSMGD-----IHTKLFPVECPKTVENFCVHSRNGY---YNGHTFHR 65
Query: 90  VIKDFMIQXXXXXXXXXXXXASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFI 148
           +IK FMIQ             SI+G +FEDE +  L H     LSMANAG +TNGSQFFI
Sbjct: 66  IIKGFMIQTGDPTGTGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFI 124
Query: 149 TTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVD 195
           T   TPWLD +H VFG+V  G ++V++I + + + + D+P + V+I++
Sbjct: 125 TVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/160 (41%), Positives = 81/160 (50%), Gaps = 17/160 (10%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKR------------PEGQGYKGSKFHRVIKDFM 95
             N G I+I LFG   P+TV NF+ LA+             P G  Y G+ FHRVI+ FM
Sbjct: 29  HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 88
Query: 96  IQXXXXXXXXXXXXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
           IQ               + D+F  E   L       L+MANAG  TNGSQFFIT  KTP 
Sbjct: 89  IQGGDPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 145
Query: 156 LDGRHVVFGKVITGGD--IVKKIESSETDGRDRPVQGVTI 193
           L+ RH +FG+VI      +V+ I  + TDG DRP   V I
Sbjct: 146 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 87/149 (58%), Gaps = 8/149 (5%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
             N G + + L     P+T +NFI L K+     Y G+ FHR I++F+IQ          
Sbjct: 25  HTNKGDLNLELHCDLTPKTCENFIRLCKK---HYYDGTIFHRSIRNFVIQGGDPTGTGTG 81
Query: 108 XXASIYGDKFEDENFK--LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGK 165
              S +G  F+DE F+  LSH G G LSMAN+G ++N SQFFIT +   +LD +H +FG+
Sbjct: 82  G-ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGR 139
Query: 166 VITGGDIVKKIESSETDGR-DRPVQGVTI 193
           V+ G D++  +E+ E+D + DRP + + I
Sbjct: 140 VVGGFDVLTAMENVESDPKTDRPKEEIRI 168

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 49  VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXX 108
            N+G  E+ L+    P+T  NF  L    E   Y  + FHRVI +F+IQ           
Sbjct: 45  TNLGDFEVELYWYHSPKTCLNFYTLC---EMGFYDNTIFHRVIPNFVIQGGDPTGTGKGG 101
Query: 109 XASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI 167
             SIYG+ FEDE N +L H G+G LSM+N G +TN SQFFIT    P LDG+H +F +V 
Sbjct: 102 -KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVS 160
Query: 168 TGGDIVKKIESSETDGRDRPVQGVTIV 194
                ++ I S +T   ++P+  + I+
Sbjct: 161 KNMTCIENIASVQTTATNKPIFDLKIL 187

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
             +VG I+I +F +  P+T +NF+ L        Y G  FHR IK FM+Q          
Sbjct: 6   HTDVGDIKIEVFCERTPKTCENFLALCA---SNYYNGCIFHRNIKGFMVQTGDPTGTGRG 62
Query: 108 XXASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
              SI+G KFEDE  + L H   G +SMAN G +TNGSQFFIT  K P LD ++ VFGKV
Sbjct: 63  GN-SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 121
Query: 167 ITGGDIVKKIESSETDGRD-RPVQGVTIVD 195
           I G + + ++E    + +  RP+  V I D
Sbjct: 122 IDGLETLDELEKLPVNEKTYRPLNDVHIKD 151

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/150 (41%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
             +VG I+I +F +  P+T +NF+ L        Y G  FHR IK FM+Q          
Sbjct: 12  HTDVGDIKIEVFCERTPKTCENFLALCA---SNYYNGCIFHRNIKGFMVQTGDPTGTGRG 68
Query: 108 XXASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
              SI+G KFEDE  + L H   G +SMAN G +TNGSQFFIT  K P LD ++ VFGKV
Sbjct: 69  GN-SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKV 127
Query: 167 ITGGDIVKKIESSETDGRD-RPVQGVTIVD 195
           I G + + ++E    + +  RP+  V I D
Sbjct: 128 IDGLETLDELEKLPVNEKTYRPLNDVHIKD 157

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXX 99
           ++FQ      N G ++  LF    P+  +NF+ L+       YK + FH+ IK F+IQ  
Sbjct: 14  LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY---YKNTIFHKNIKGFIIQGG 70
Query: 100 XXXXXXXXXXASIYGDKFEDENF-KLSHYGSGWLSMANAGK----DTNGSQFFITTKKTP 154
                      SIYG  F+DE + +L +   G LSMA+ G     +TNGSQFFIT    P
Sbjct: 71  DPTGTGKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLP 129
Query: 155 WLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD 195
            L+G +V+FGK+I G + +  +E+  +D   +P+  + I D
Sbjct: 130 QLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/149 (36%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 51  VGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXXA 110
            G I+I L+ K  P+  +NFI+L        Y  + FHRV+  F++Q             
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTGTGSGG-E 88
Query: 111 SIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG 169
           SIYG  F+DE + +L     G ++MANAG   NGSQFF T  +   L+ +H +FGKV TG
Sbjct: 89  SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV-TG 147
Query: 170 GDIVKKIESSETDGRD--RPVQGVTIVDC 196
             +   +  SE D  D  RP     I  C
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKIKSC 176

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 70/142 (49%), Gaps = 15/142 (10%)
Query: 52  GKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXXAS 111
           G + I L     PR   +F+ L      + +  + FHR I++FMIQ              
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAV---KYFDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 112 IY-----------GDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
           +            G  FEDE + +L H G G LSMAN GK +N S+FFIT K    L+ +
Sbjct: 73  VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNK 132
Query: 160 HVVFGKVITGGDIVKKIESSET 181
           H +FG+V+ G D++++ E  ET
Sbjct: 133 HTIFGRVVGGLDVLRQWEKLET 154

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 24/195 (12%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
             ++G +++ L+ +  P   +NF++L    EG  Y  + FHRV+KDF++Q          
Sbjct: 27  HTSLGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 108 XXASIY-GDKFEDENF-KLSHYGSGWLSMANAGKD--------------TNGSQFFITTK 151
              + + G  F+ E   +L     G + +AN G+               TNG+QFFIT  
Sbjct: 84  GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLA 143
Query: 152 KTPWLDGRHVVFGKVITGGDI--VKKIESSETDGRDRPVQGVTI--VDCGHTPVEEPFSD 207
           +   L+  + +FGKV TG  +  + K    E    DRP+    I  VD    P E+    
Sbjct: 144 RADVLNNAYTLFGKV-TGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPFEDLVPR 202
Query: 208 VVKKIESSETDGRDR 222
            +     ++ D R R
Sbjct: 203 RLPDAPPAQKDERKR 217

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXX 109
           + G IE+ L  +  P +VQNF++         Y  + FHRVI  FMIQ            
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYV---NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK 68
Query: 110 ASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-GR----HVVF 163
            +       D   + +    G ++MA  A KD+  SQFFI      +LD G+    + VF
Sbjct: 69  PNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 164 GKVITGGDIVKKIESSET 181
           GKV+ G D+  KI    T
Sbjct: 126 GKVVKGMDVADKISQVPT 143

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXXXX 109
           + G IE+ L  +  P +VQNF++         Y  + FHRVI  FMIQ            
Sbjct: 12  SAGNIELELDKQKAPVSVQNFVDYV---NSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKK 68
Query: 110 ASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-GR----HVVF 163
            +       D   + +    G ++MA  A KD+  SQFFI      +LD G+    + VF
Sbjct: 69  PNPPIKNEADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVF 125
Query: 164 GKVITGGDIVKKIESSET 181
           GKV+ G D+  KI    T
Sbjct: 126 GKVVKGMDVADKISQVPT 143

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
           + N G I + LF    P T  NF +  K  +G  Y G+ FHRVI  FMIQ          
Sbjct: 5   QTNHGTITLKLFADKAPETAANFEQYVK--DGH-YDGTIFHRVIDGFMIQGGGFEPGMKQ 61
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR-------- 159
              S       + N  LS+              +  +QFFI  K   +LD          
Sbjct: 62  K--STRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAHGWG 119
Query: 160 HVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
           + VFG+V+ G D+V +I+S  T  R    D PV  V I
Sbjct: 120 YAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVII 157

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 15/143 (10%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
             N G I++ L     P+TV+NF+   K+     Y G+ FHRVI  FMIQ          
Sbjct: 9   HTNHGVIKLELDEAKAPKTVENFLNYVKKGH---YDGTIFHRVINGFMIQGGGFEPGLKQ 65
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNG-SQFFITTKKTPWLDGR------- 159
                      +   K   Y    ++MA      +  +QFFI      +L+         
Sbjct: 66  KPTDAPIANEANNGLKNDTY---TIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW 122
Query: 160 -HVVFGKVITGGDIVKKIESSET 181
            + VFGKV+ G DIV KI++ +T
Sbjct: 123 GYAVFGKVVEGQDIVDKIKAVKT 145

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 71/190 (37%), Gaps = 34/190 (17%)
Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----------------KRPEGQGY 82
           V+  I +    +G+++I LF    P  V+NF++L                   R   + Y
Sbjct: 17  VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 83  KGSKFHRVIKDFMIQXXXXXXXXXXXXASIYGDK-----FEDENFKLSHYGSGWLSMA-- 135
           +G KFH V+ +  I              ++Y D+     F D  +   H   G LS+   
Sbjct: 77  EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLVPY 134
Query: 136 --NAGKDTNGSQFFIT------TKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP 187
              +G     S F IT      +     LD   VV G+V  G D++ KI S       R 
Sbjct: 135 TDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRK 194
Query: 188 VQGVTIVDCG 197
               +I  CG
Sbjct: 195 YPTFSIGKCG 204

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 15/143 (10%)
Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQXXXXXXXXXX 107
             N G I I  F    P TV+NF++  +  EG  Y  + FHRVI  FMIQ          
Sbjct: 5   HTNHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFEPGMKQ 61
Query: 108 XXASIYGDKFEDENFKLSHYGSGWLSMANA-GKDTNGSQFFITTKKTPWLDGR------- 159
                  +  ++E         G L+MA      +  +QFFI      +L+         
Sbjct: 62  KATK---EPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGW 118
Query: 160 -HVVFGKVITGGDIVKKIESSET 181
            + VF +V+ G D+V KI+   T
Sbjct: 119 GYCVFAEVVDGMDVVDKIKGVAT 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	249
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-105
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-100
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	2e-99
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	4e-99
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	6e-98
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-97
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-97
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	6e-96
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	8e-96
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	4e-94
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	5e-93
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-92
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	2e-92
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	5e-92
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	6e-91
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	8e-91
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-90
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-89
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	3e-88
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	6e-80
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	7e-80
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	1e-79
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	5e-78
2b71_A	196	Cyclophilin-like protein; structural genomics, str	2e-74
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	9e-73
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	8e-72
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	2e-70
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	6e-70
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	1e-69
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	1e-62
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-62
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	1e-43
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	4e-43
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	4e-42
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	2e-35

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  301 bits (772), Expect = e-105
 Identities = 119/181 (65%), Positives = 150/181 (82%)

Query: 26  ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
            +++  KGPKVT  V+F ++IG+ +VG++  GLFGKTVP+TV NF+ LA   +G GYK S
Sbjct: 4   GSDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNS 63

Query: 86  KFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
           KFHRVIKDFMIQGGD+T+GDGTGG SIYG++F DENFKL HYG GW+SMANAGKDTNGSQ
Sbjct: 64  KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 123

Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPF 205
           FFITT KT WLDG+HVVFGKV+ G ++V+K+ES++TD RD+P++ V I DCG   VE+PF
Sbjct: 124 FFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPF 183

Query: 206 S 206
           +
Sbjct: 184 A 184

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  287 bits (738), Expect = e-100
 Identities = 92/173 (53%), Positives = 110/173 (63%), Gaps = 5/173 (2%)

Query: 30  VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFI-----ELAKRPEGQGYKG 84
           VA    V  +V+F + IG   VG+++I LF   VP+T +NF      E  K     GYKG
Sbjct: 3   VANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKG 62

Query: 85  SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
           S FHRVIKDFMIQGGD+  GDGTG ASIY   F DENFKL H   G LSMAN+G  TNG 
Sbjct: 63  STFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGC 122

Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           QFFIT  K  WLDG+HVVFGK+I G  +++KIE+  T   ++P   V I  CG
Sbjct: 123 QFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 175

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  286 bits (735), Expect = 2e-99
 Identities = 87/180 (48%), Positives = 114/180 (63%), Gaps = 8/180 (4%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------Y 82
              P+ +    F I+I    VG+I   LF    P+T +NF+ L    +G G        Y
Sbjct: 13  GLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCY 72

Query: 83  KGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTN 142
           KGS FHRV+K+FMIQGGD+++G+G GG SIYG  F+DENF L H  +  LSMAN GK TN
Sbjct: 73  KGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTN 132

Query: 143 GSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVE 202
           GSQFFITTK  P LDG HVVFG VI+G +++++IE+ +TD   RP   V ++DCG    +
Sbjct: 133 GSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLATK 192

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  285 bits (731), Expect = 4e-99
 Identities = 98/167 (58%), Positives = 118/167 (70%), Gaps = 1/167 (0%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
              P+VT  V+F + I    +G+I IGLFGK  P T +NF +L     G GYK S FHRV
Sbjct: 5   HHEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRV 64

Query: 91  IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
           I++FMIQGGD+T  DGTGG SIYG+KF DEN  + H   G LSMANAG +TNGSQFFITT
Sbjct: 65  IQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFFITT 123

Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
             TPWLDGRHVVFGKV+ G D+V +IE ++T+  DRPV+ V IV  G
Sbjct: 124 APTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASG 170

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  282 bits (724), Expect = 6e-98
 Identities = 84/173 (48%), Positives = 108/173 (62%), Gaps = 8/173 (4%)

Query: 33  GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKG 84
             K    V+  + I     G+I + L+    PRT  NF+ L     G G        YKG
Sbjct: 2   SKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKG 61

Query: 85  SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
           S FHRVIK+FMIQGGD+TKGDGTGG SIYG  F+DE F + H     +SMAN G +TNGS
Sbjct: 62  STFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGS 121

Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           QFFITT   P L+  HVVFGKV++G ++V KIE  +T+ ++RP+  V I++CG
Sbjct: 122 QFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 174

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  282 bits (724), Expect = 1e-97
 Identities = 85/178 (47%), Positives = 113/178 (63%), Gaps = 1/178 (0%)

Query: 26  ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGS 85
                +   + +  V+F +   E ++G+I + L    VP+T +NF  L +RP+G+GYKGS
Sbjct: 16  TQGPGSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGS 75

Query: 86  KFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQ 145
            FHR+I  FM+QGGDYT  +GTGG SIYG+KF DENF+L H   G LSMAN G  TNGSQ
Sbjct: 76  TFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQ 135

Query: 146 FFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETD-GRDRPVQGVTIVDCGHTPVE 202
           FFIT  KT WLD +HVVFG+V+ G D+V KI    ++ G+ +    + I DCG     
Sbjct: 136 FFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGSN 193

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  281 bits (722), Expect = 1e-97
 Identities = 87/176 (49%), Positives = 111/176 (63%), Gaps = 9/176 (5%)

Query: 31  AKGPKVTD-IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------- 81
           A G KV     +F I I     G++   LF    P+T +NF  L    +G G        
Sbjct: 2   AMGIKVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH 61

Query: 82  YKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDT 141
           YK   FHRV+KDFM+QGGD+++G+G GG SIYG  FEDE+F + H     LSMAN GKDT
Sbjct: 62  YKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDT 121

Query: 142 NGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           NGSQFFITTK TP LDG HVVFG+VI+G ++V++IE+ +TD   +P   V I+ CG
Sbjct: 122 NGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCG 177

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  277 bits (711), Expect = 6e-96
 Identities = 86/170 (50%), Positives = 112/170 (65%), Gaps = 1/170 (0%)

Query: 28  EKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKF 87
             +AK  +    V+  I+IG    G+I++ L    VP T +NF  L    +G G+KGS F
Sbjct: 2   SPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSF 61

Query: 88  HRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFF 147
           HR+I  FM QGGD+T  +GTGG SIYG KF+DENF L H G G LSMAN+G +TNGSQFF
Sbjct: 62  HRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFF 121

Query: 148 ITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           +T  KT WLDG+HVVFG+V  G D++++IE+  +    +P Q V I DCG
Sbjct: 122 LTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKD-GKPKQKVIIADCG 170

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  277 bits (710), Expect = 8e-96
 Identities = 87/169 (51%), Positives = 109/169 (64%), Gaps = 1/169 (0%)

Query: 29  KVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFH 88
           +  K  +    V+F I+IG  + G+I + L    VPRT +NF  L     G GY    FH
Sbjct: 2   RTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFH 61

Query: 89  RVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFI 148
           RVI  FM QGGD+ KGDGTGG SIYG KF+DENF+L H G G LSMAN+G +TNGSQFFI
Sbjct: 62  RVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFI 121

Query: 149 TTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
            T K  WLDG+HVVFG+V+ G ++VKK+ES  +    +  + V I  CG
Sbjct: 122 CTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKS-GKVKEPVIISRCG 169

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  273 bits (700), Expect = 4e-94
 Identities = 88/173 (50%), Positives = 113/173 (65%), Gaps = 1/173 (0%)

Query: 25  TANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKG 84
           +  E +     V   V+F I +    +G++   LF   VP+T +NF  L+   +G GYKG
Sbjct: 10  SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKG 69

Query: 85  SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
           S FHR+I  FM QGGD+T+ +GTGG SIYG+KFEDENF L H G G LSMANAG +TNGS
Sbjct: 70  SCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGS 129

Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           QFFI T KT WLDG+HVVFGKV  G +IV+ +E   +    +  + +TI DCG
Sbjct: 130 QFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRN-GKTSKKITIADCG 181

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  269 bits (691), Expect = 5e-93
 Identities = 87/158 (55%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG 99
           V+F I I +   G+I   L+ + VP+T +NF ELA    G GYK S FHRVI  FM+QGG
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64

Query: 100 DYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
           D+T+ +GTGG SIYG+KF DENF++ H   G LSMANAG +TNGSQFFITT  T WLDG+
Sbjct: 65  DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGK 124

Query: 160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           HVVFG+VI G DIV+K+E   +    +    + I DCG
Sbjct: 125 HVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDCG 161

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  268 bits (689), Expect = 1e-92
 Identities = 85/159 (53%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQG 98
           +V+  +      +G++ + L    VP+T +NF  L    +G GYKGS FHRVI  FM Q 
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 64

Query: 99  GDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
           GD+T  +GTGG SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 65  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 124

Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           +HVVFG VI G D+VKKIES  +    R  + + I DCG
Sbjct: 125 KHVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCG 162

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  268 bits (687), Expect = 2e-92
 Identities = 91/168 (54%), Positives = 113/168 (67%), Gaps = 4/168 (2%)

Query: 34  PKVT-DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIK 92
            +V  D+ +  +   E  VG+I   LF K VP+T +NF EL KRP G+GY+ S FHR+I 
Sbjct: 3   SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 62

Query: 93  DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
           +FMIQGGD+T+G+GTGG SIYGDKF DENF   H   G LSMANAG +TNGSQFFITT  
Sbjct: 63  NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 122

Query: 153 TPWLDGRHVVFGKVI--TGGDIVKKIESSETD-GRDRPVQGVTIVDCG 197
           T WLDG+HVVFG+V       +VK+IE+  +  G  R      IV+CG
Sbjct: 123 TSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 170

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  267 bits (685), Expect = 5e-92
 Identities = 81/165 (49%), Positives = 97/165 (58%), Gaps = 7/165 (4%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIEL------AKRPEGQGYKGSKFHRVIK 92
            V+F I I   N G+I   LF    PRT +NF  L        R +   YK S FHR+I 
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIP 64

Query: 93  DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
            FM QGGD T G+G+GG SIYG  F DENF + H   G LSMANAG +TN SQFFIT   
Sbjct: 65  QFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVP 124

Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
            PWLDG+HVVFGKVI G ++V+++E           + V I DCG
Sbjct: 125 CPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCG 168

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  265 bits (679), Expect = 6e-91
 Identities = 85/166 (51%), Positives = 105/166 (63%), Gaps = 8/166 (4%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-------KRPEGQGYKGSKFHRVI 91
           +V+F I IG+   G+I + LF   VP T +NF  L        +  +   Y GS FHR+I
Sbjct: 21  VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80

Query: 92  KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
             FMIQGGD+T+GDGTGG SIYG KF DENF  +H     LSMANAG +TNGSQFFITT 
Sbjct: 81  PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140

Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
             PWLDG+HVVFGKV+ G ++VK IE   +    +P + V I   G
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQN-GKPTKSVCITASG 185

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  264 bits (677), Expect = 8e-91
 Identities = 89/168 (52%), Positives = 113/168 (67%), Gaps = 8/168 (4%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-------KRPEGQGYKGSKFHRVIK 92
           V+F I IG    G+I + L+   VP+T  NF  L        K  +   +KGSKFHR+I 
Sbjct: 6   VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65

Query: 93  DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
           +FMIQGGD+T+G+GTGG SIYG+KF DENFK  H G G LSMANAG +TNGSQFF+ T K
Sbjct: 66  NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125

Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTP 200
           T WLDG+HVVFG+V+ G D+VK +ES+ +    +PV+   I DCG   
Sbjct: 126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQS-GKPVKDCMIADCGQLK 172

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  266 bits (681), Expect = 1e-90
 Identities = 76/167 (45%), Positives = 105/167 (62%), Gaps = 8/167 (4%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----KRPEGQGYKGSKFHRVIKD 93
           +V+  I +G   +GK +  LF   VP+T +NF +             GYK + FHRVIK+
Sbjct: 61  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 120

Query: 94  FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQGGD+   +G+G  SIYG+KF+DENF + H   G LSMAN+G +TNG QFFITTKK 
Sbjct: 121 FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 180

Query: 154 PWLDGRHVVFGKVIT--GGDIVKKIESSETDGR-DRPVQGVTIVDCG 197
            WLDG++VVFG++I      ++KKIE+        +P   + +V+CG
Sbjct: 181 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 227

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  268 bits (687), Expect = 1e-89
 Identities = 86/189 (45%), Positives = 113/189 (59%), Gaps = 9/189 (4%)

Query: 26  ANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG---- 81
            + +          V+F + IG   VG+I + LF   VP+T +NF  L    +G G    
Sbjct: 4   PSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTG 63

Query: 82  ----YKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANA 137
               +KG  FHR+IK FMIQGGD++  +GTGG SIYG+KFEDENF   H   G LSMANA
Sbjct: 64  KPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANA 123

Query: 138 GKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           G +TNGSQFFITT  TP LDG+HVVFG+VI G  + K +E+ E  G ++P +   I +CG
Sbjct: 124 GSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECG 182

Query: 198 HTPVEEPFS 206
                + + 
Sbjct: 183 ELKEGDDWG 191

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  260 bits (666), Expect = 3e-88
 Identities = 49/225 (21%), Positives = 80/225 (35%), Gaps = 30/225 (13%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA---------------- 74
                    V+  I +    +G+++I LF    P  V+NF++L                 
Sbjct: 8   LPNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYK 67

Query: 75  -KRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFED---ENFKLSHYGSG 130
             R   + Y+G KFH V+ +  I  GD    +G+   ++Y D+       ++   H   G
Sbjct: 68  YNRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKG 127

Query: 131 WLSMA----NAGKDTNGSQFFIT------TKKTPWLDGRHVVFGKVITGGDIVKKIESSE 180
            LS+      +G     S F IT      +     LD   VV G+V  G D++ KI S  
Sbjct: 128 LLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMI 187

Query: 181 TDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRPVQ 225
                R     +I  CG                +      ++P +
Sbjct: 188 KPYAGRKYPTFSIGKCGAYLDSSQAQRKRPVNVNGTKRFLNKPTR 232

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  236 bits (605), Expect = 6e-80
 Identities = 79/146 (54%), Positives = 102/146 (69%), Gaps = 5/146 (3%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           ++G I + L+ K  P+T +NF ELA+R     Y G+KFHR+IKDFMIQGGD T G G GG
Sbjct: 19  SMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPT-GTGRGG 74

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
           ASIYG +FEDE +  L   G+G L+MANAG DTNGSQFF+T   T WLDG+H +FG+V  
Sbjct: 75  ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQ 134

Query: 169 GGDIVKKIESSETDGRDRPVQGVTIV 194
           G  +V ++   ET+ +DRPV  V I+
Sbjct: 135 GIGMVNRVGMVETNSQDRPVDDVKII 160

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  237 bits (607), Expect = 7e-80
 Identities = 82/175 (46%), Positives = 106/175 (60%), Gaps = 5/175 (2%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           ++G I + L+ K  P+T +NF ELA+R     Y G+KFHR+IKDFMIQGGD T G G GG
Sbjct: 19  SMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPT-GTGRGG 74

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
           ASIYG +FEDE +  L   G+G L+MANAG DTNGSQFF+T   T WLDG+H +FG+V  
Sbjct: 75  ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQ 134

Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETDGRDRP 223
           G  +V ++   ET+ +DRPV  V I+    +                  DG   P
Sbjct: 135 GIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAFP 189

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  235 bits (602), Expect = 1e-79
 Identities = 75/148 (50%), Positives = 93/148 (62%), Gaps = 5/148 (3%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
            +G I I LF K   +TVQNF   +       Y    FHRVIK FM+Q GD + GDGTGG
Sbjct: 13  TMGDIHISLFYKECKKTVQNFSVHSING---YYNNCIFHRVIKHFMVQTGDPS-GDGTGG 68

Query: 110 ASIYGDKFEDENFK-LSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
            SI+G++FEDE F  L+H     +SMAN G +TNGSQFFITT   PWLD +H VFGKV  
Sbjct: 69  ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQ 128

Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDC 196
           G  IV  IE   TD RD+P++ + I++ 
Sbjct: 129 GSKIVLDIEKVRTDKRDKPLEDIKILNI 156

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  232 bits (593), Expect = 5e-78
 Identities = 72/174 (41%), Positives = 100/174 (57%), Gaps = 6/174 (3%)

Query: 25  TANEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKG 84
           +  E +A              I   ++G I   LF    P+TV+NF   ++      Y G
Sbjct: 4   SKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNG---YYNG 60

Query: 85  SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNG 143
             FHR+IK FMIQ GD T G G GG SI+G +FEDE +  L H     LSMANAG +TNG
Sbjct: 61  HTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNG 119

Query: 144 SQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDC 196
           SQFFIT   TPWLD +H VFG+V  G ++V++I + + + + D+P + V+I++ 
Sbjct: 120 SQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 173

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  223 bits (571), Expect = 2e-74
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 5/148 (3%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           N+G  E+ L+    P+T  NF  L +      Y  + FHRVI +F+IQGGD T G G GG
Sbjct: 46  NLGDFEVELYWYHSPKTCLNFYTLCEMGF---YDNTIFHRVIPNFVIQGGDPT-GTGKGG 101

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
            SIYG+ FEDE N +L H G+G LSM+N G +TN SQFFIT    P LDG+H +F +V  
Sbjct: 102 KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSK 161

Query: 169 GGDIVKKIESSETDGRDRPVQGVTIVDC 196
               ++ I S +T   ++P+  + I+  
Sbjct: 162 NMTCIENIASVQTTATNKPIFDLKILRT 189

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  219 bits (561), Expect = 9e-73
 Identities = 59/179 (32%), Positives = 89/179 (49%), Gaps = 17/179 (9%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGD---- 105
             G + I L     PR   +F+ L        +  + FHR I++FMIQGG          
Sbjct: 14  TQGSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKK 70

Query: 106 GTGGASIY-------GDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLD 157
                S         G  FEDE + +L H G G LSMAN GK +N S+FFIT K    L+
Sbjct: 71  KEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLN 130

Query: 158 GRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSE 216
            +H +FG+V+ G D++++ E  ETD +D+P++   + +      + PF D  K++E  +
Sbjct: 131 NKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEI--IVFKNPFEDARKEMEDEK 187

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  216 bits (553), Expect = 8e-72
 Identities = 66/174 (37%), Positives = 96/174 (55%), Gaps = 11/174 (6%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG 99
           ++FQ      N G ++  LF    P+  +NF+ L+       YK + FH+ IK F+IQGG
Sbjct: 14  LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY---YKNTIFHKNIKGFIIQGG 70

Query: 100 DYTKGDGTGGASIYGDKFEDENF-KLSHYGSGWLSMANAGK----DTNGSQFFITTKKTP 154
           D T G G GG SIYG  F+DE + +L +   G LSMA+ G     +TNGSQFFIT    P
Sbjct: 71  DPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLP 129

Query: 155 WLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDV 208
            L+G +V+FGK+I G + +  +E+  +D   +P+  + I D        P +D 
Sbjct: 130 QLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDI--VIHSNPIADQ 181

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  213 bits (545), Expect = 2e-70
 Identities = 69/171 (40%), Positives = 101/171 (59%), Gaps = 8/171 (4%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           N G + + L     P+T +NFI L K+     Y G+ FHR I++F+IQGGD T G GTGG
Sbjct: 27  NKGDLNLELHCDLTPKTCENFIRLCKKHY---YDGTIFHRSIRNFVIQGGDPT-GTGTGG 82

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
            S +G  F+DE    LSH G G LSMAN+G ++N SQFFIT +   +LD +H +FG+V+ 
Sbjct: 83  ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVG 142

Query: 169 GGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFSDVVKKIESSETD 218
           G D++  +E+ E+D + DRP + + I     T   +P+ +   +I      
Sbjct: 143 GFDVLTAMENVESDPKTDRPKEEIRIDAT--TVFVDPYEEADAQIAQERKT 191

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  212 bits (541), Expect = 6e-70
 Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 8/160 (5%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
             G I+I L+ K  P+  +NFI+L        Y  + FHRV+  F++QGGD T G G+GG
Sbjct: 32  TAGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPT-GTGSGG 87

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
            SIYG  F+DE + +L     G ++MANAG   NGSQFF T  +   L+ +H +FGKV  
Sbjct: 88  ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTG 147

Query: 169 GG-DIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSD 207
                + ++   + D  +RP     I  C    +  PF D
Sbjct: 148 DTVYNMLRLSEVDIDDDERPHNPHKIKSC--EVLFNPFDD 185

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  210 bits (537), Expect = 1e-69
 Identities = 72/159 (45%), Positives = 94/159 (59%), Gaps = 8/159 (5%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           +VG I+I +F +  P+T +NF+ L        Y G  FHR IK FM+Q GD T G G GG
Sbjct: 8   DVGDIKIEVFCERTPKTCENFLALCASN---YYNGCIFHRNIKGFMVQTGDPT-GTGRGG 63

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT 168
            SI+G KFEDE +  L H   G +SMAN G +TNGSQFFIT  K P LD ++ VFGKVI 
Sbjct: 64  NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVID 123

Query: 169 GGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFS 206
           G + + ++E    + +  RP+  V I D   T    PF+
Sbjct: 124 GLETLDELEKLPVNEKTYRPLNDVHIKDI--TIHANPFA 160

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  195 bits (497), Expect = 1e-62
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 24/185 (12%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           ++G +++ L+ +  P   +NF++L        Y  + FHRV+KDF++QGGD T G G GG
Sbjct: 29  SLGDLDVELWARECPLACRNFVQLCLEGY---YVNTIFHRVVKDFIVQGGDPT-GTGRGG 84

Query: 110 A--SIYGDKFEDE-NFKLSHYGSGWLSMANAGKD--------------TNGSQFFITTKK 152
           A  +  G  F+ E + +L     G + +AN G+               TNG+QFFIT  +
Sbjct: 85  ADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLAR 144

Query: 153 TPWLDGRHVVFGKVITGG-DIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKK 211
              L+  + +FGKV       + K    E    DRP+    I       +  PF D+V +
Sbjct: 145 ADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSV--DVLWNPFEDLVPR 202

Query: 212 IESSE 216
                
Sbjct: 203 RLPDA 207

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  193 bits (491), Expect = 2e-62
 Identities = 74/160 (46%), Positives = 90/160 (56%), Gaps = 19/160 (11%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG------------YKGSKFHRVIKDFMIQ 97
           N G I+I LFG   P+TV NF+ LA+  +               Y G+ FHRVI+ FMIQ
Sbjct: 31  NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90

Query: 98  GGDYTKGDGTGGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWL 156
           GGD T G G GG    G KF DE + +L       L+MANAG  TNGSQFFIT  KTP L
Sbjct: 91  GGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHL 146

Query: 157 DGRHVVFGKVIT--GGDIVKKIESSETDGRDRPVQGVTIV 194
           + RH +FG+VI      +V+ I  + TDG DRP   V I 
Sbjct: 147 NRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIE 186

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  144 bits (366), Expect = 1e-43
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 21/160 (13%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             N G I++ L     P+TV+NF+   K  +G  Y G+ FHRVI  FMIQGG +      
Sbjct: 9   HTNHGVIKLELDEAKAPKTVENFLNYVK--KGH-YDGTIFHRVINGFMIQGGGFE-PGLK 64

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLDGR------ 159
              +       +E N  L +  +  ++MA      +  +QFFI      +L+        
Sbjct: 65  QKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQG 121

Query: 160 --HVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
             + VFGKV+ G DIV KI++ +T  +    D P   V I
Sbjct: 122 WGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  142 bits (361), Expect = 4e-43
 Identities = 50/158 (31%), Positives = 71/158 (44%), Gaps = 21/158 (13%)

Query: 50  NVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG 109
           N G I I  F    P TV+NF++  +  EG  Y  + FHRVI  FMIQGG +        
Sbjct: 7   NHGDIVIKTFDDKAPETVKNFLDYCR--EGF-YNNTIFHRVINGFMIQGGGFE-PGMKQK 62

Query: 110 ASIYGDKFEDE-NFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLDGR-------- 159
           A+   +  ++E N  L +   G L+MA      +  +QFFI      +L+          
Sbjct: 63  AT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119

Query: 160 HVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
           + VF +V+ G D V KI+   T       D P + V I
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  140 bits (355), Expect = 4e-42
 Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 18/157 (11%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             + G IE+ L  +  P +VQNF++      G  Y  + FHRVI  FMIQGG +T     
Sbjct: 10  TTSAGNIELELDKQKAPVSVQNFVDYVN--SGF-YNNTTFHRVIPGFMIQGGGFT-EQMQ 65

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLDGR-----H 160
                     ++E +  L +   G ++MA  A KD+  SQFFI      +LD       +
Sbjct: 66  QKKP--NPPIKNEADNGLRN-TRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGY 122

Query: 161 VVFGKVITGGDIVKKIESSETDGR----DRPVQGVTI 193
            VFGKV+ G D+  KI    T       + P + V I
Sbjct: 123 AVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  128 bits (324), Expect = 2e-35
 Identities = 37/183 (20%), Positives = 57/183 (31%), Gaps = 45/183 (24%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
            +      I L G   P T  NF++L +R     Y G +  R    F++Q GD       
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLVERH---FYDGMEIQRSD-GFVVQTGDPEGPAEG 239

Query: 108 G--------------------GASIYGDKFED-----ENFKLSHYGSGWLSMANAGK--D 140
                                    YG   E+         +     G ++MA      D
Sbjct: 240 FIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFEND 299

Query: 141 TNGSQFFITTKK-------TPWLDGRHVVFGKVITGGDIVKKIESSE-------TDGRDR 186
           +  SQ F   K+       +  LDGR+ VFG V    D +  ++  +         G + 
Sbjct: 300 SGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIESIQVVSGLEN 359

Query: 187 PVQ 189
              
Sbjct: 360 LAN 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	249
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	97.59
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	96.78
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	94.97
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	94.64
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	94.55
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	94.47
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	94.26
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	94.25
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	93.77
1z81_A	229	Cyclophilin; structural genomics, structural genom	93.75
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	93.61
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	92.7
3kop_A	188	Uncharacterized protein; protein with A cyclophili	92.4
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	91.92
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	91.83
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	91.76
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	91.74
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	91.62
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	91.2
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	91.03
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	90.75
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	89.62
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	88.78
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	88.24
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	85.83
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	84.51
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	84.3
2b71_A	196	Cyclophilin-like protein; structural genomics, str	83.46
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	83.17
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	83.16
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	81.32

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.6e-56  Score=370.95  Aligned_cols=181  Identities=66%  Similarity=1.171  Sum_probs=169.4

Q ss_pred             hhhhcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCC
Q psy10359         27 NEKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDG  106 (249)
Q Consensus        27 ~~~~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~  106 (249)
                      ++..+..|.++++|||||++++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||+..+++
T Consensus         5 ~~~~~~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g   84 (188)
T 3ich_A            5 SDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDG   84 (188)
T ss_dssp             ----CCSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             cCCCCCCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCCccccCCEEEEEECCCEEEcCCccCCCC
Confidence            44566778999999999999999999999999999999999999999987668889999999999999999999877889


Q ss_pred             CCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCC
Q psy10359        107 TGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDR  186 (249)
Q Consensus       107 ~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~  186 (249)
                      .|+.++|+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++||+||++|++++++.+++
T Consensus        85 ~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~  164 (188)
T 3ich_A           85 TGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDK  164 (188)
T ss_dssp             SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998889


Q ss_pred             cccceEEeeeeeeccCCCchh
Q psy10359        187 PVQGVTIVDCGHTPVEEPFSD  207 (249)
Q Consensus       187 P~~~i~I~~cg~l~~~~p~~~  207 (249)
                      |.++|+|.+||++..++||.+
T Consensus       165 P~~~v~I~~~~~l~~~~Pf~~  185 (188)
T 3ich_A          165 PLKDVIIADCGKIEVEKPFAI  185 (188)
T ss_dssp             BSSCEEEEEEEEEEEEEEEEC
T ss_pred             ECCCEEEEEeEEEecCCCCCC
Confidence            999999999999988889874

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.2e-56  Score=370.24  Aligned_cols=179  Identities=67%  Similarity=1.211  Sum_probs=166.4

Q ss_pred             hhhcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCC
Q psy10359         28 EKVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT  107 (249)
Q Consensus        28 ~~~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~  107 (249)
                      +.++.+|+++++|||||++++++.|+|+||||++.||+||+||++||++++|++|+|+.|||++|+||+||||+..+++.
T Consensus         3 ~~~~~~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   82 (185)
T 4fru_A            3 DEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGT   82 (185)
T ss_dssp             CGGGEEEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSS
T ss_pred             CccCCCCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCCeEcCCEEEEeeCCCeEEECCCCCCCCC
Confidence            34556789999999999999999999999999999999999999999986664499999999999999999999988999


Q ss_pred             CCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCc
Q psy10359        108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP  187 (249)
Q Consensus       108 ~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P  187 (249)
                      ++.++|+..+++|+..++|+++|+|||||.++++|+|||||++.++++||++|+|||||++|||||++|++++++.+++|
T Consensus        83 gg~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P  162 (185)
T 4fru_A           83 GGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKP  162 (185)
T ss_dssp             CCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887888


Q ss_pred             ccceEEeeeeeeccCCCch
Q psy10359        188 VQGVTIVDCGHTPVEEPFS  206 (249)
Q Consensus       188 ~~~i~I~~cg~l~~~~p~~  206 (249)
                      .++|+|.+||++..++||.
T Consensus       163 ~~~v~I~~~g~l~~~~Pf~  181 (185)
T 4fru_A          163 LKDVTIADCGKIEVEKPFA  181 (185)
T ss_dssp             SSCEEEEEEEEEEEEEEEE
T ss_pred             CCCEEEEEceEEecCCCCc
Confidence            8888888888887777764

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.5e-54  Score=355.45  Aligned_cols=167  Identities=59%  Similarity=0.988  Sum_probs=159.9

Q ss_pred             CCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCc
Q psy10359         32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS  111 (249)
Q Consensus        32 ~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~  111 (249)
                      .+|.++++|||||++++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||+..+++.|+.+
T Consensus         6 ~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~s   85 (172)
T 2haq_A            6 HEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGKS   85 (172)
T ss_dssp             -CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCC
T ss_pred             CCCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCCcccCCCEEEEEECCCEEecCCccCCCCCCCcc
Confidence            46888999999999999999999999999999999999999998777888999999999999999999987788999999


Q ss_pred             cCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccce
Q psy10359        112 IYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGV  191 (249)
Q Consensus       112 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i  191 (249)
                      +|+..|++|+..++|. +|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++.+++|.++|
T Consensus        86 i~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v  164 (172)
T 2haq_A           86 IYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPV  164 (172)
T ss_dssp             SSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCE
T ss_pred             ccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCe
Confidence            9999999999999999 999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEeeeeee
Q psy10359        192 TIVDCGHT  199 (249)
Q Consensus       192 ~I~~cg~l  199 (249)
                      +|.+||+|
T Consensus       165 ~I~~~g~l  172 (172)
T 2haq_A          165 KIVASGEL  172 (172)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEeEEC
Confidence            99999985

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=1.6e-53  Score=349.78  Aligned_cols=165  Identities=52%  Similarity=0.889  Sum_probs=156.5

Q ss_pred             CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccC
Q psy10359         34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIY  113 (249)
Q Consensus        34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~  113 (249)
                      +..+++|||||++++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||+..+++.|+.++|
T Consensus         7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg~si~   86 (172)
T 2cmt_A            7 KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIY   86 (172)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCCceECCCEEEEEECCCEEEcCCccCCCCCCCCccC
Confidence            45678999999999999999999999999999999999999986677799999999999999999999888889999999


Q ss_pred             CCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEE
Q psy10359        114 GDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI  193 (249)
Q Consensus       114 ~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I  193 (249)
                      +..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||+|++|||||++|++++++ +++|.++|+|
T Consensus        87 g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~I  165 (172)
T 2cmt_A           87 GRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSK-SGKVKEPVII  165 (172)
T ss_dssp             BSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCT-TCCCSSCEEE
T ss_pred             CCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999885 6899999999


Q ss_pred             eeeeee
Q psy10359        194 VDCGHT  199 (249)
Q Consensus       194 ~~cg~l  199 (249)
                      .+||+|
T Consensus       166 ~~~g~l  171 (172)
T 2cmt_A          166 SRCGEL  171 (172)
T ss_dssp             EEEEEE
T ss_pred             EEeEeE
Confidence            999997

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=2.4e-53  Score=350.49  Aligned_cols=164  Identities=50%  Similarity=0.857  Sum_probs=156.4

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCC---------CccCCCEEEEeecCceeeecCCCCCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG---------QGYKGSKFHRVIKDFMIQGGDYTKGDG  106 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g---------~~Y~g~~f~ri~~~~~iq~Gd~~~~~~  106 (249)
                      .+++|||||++++++.|+|+||||++.||+||+||++||++..|         + |+|+.|||++|+||+||||++.+++
T Consensus         5 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~g   83 (177)
T 1a58_A            5 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDG   83 (177)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcce-eCCCEEEEEECCCEEEeCCccCCCC
Confidence            46799999999999999999999999999999999999986332         4 9999999999999999999988889


Q ss_pred             CCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCC
Q psy10359        107 TGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDR  186 (249)
Q Consensus       107 ~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~  186 (249)
                      .|+.++|+..|++|++.++|+++|+|||||.+|++|+|||||++.+++|||++|+|||||++|||||++|++++++.+++
T Consensus        84 ~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~  163 (177)
T 1a58_A           84 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  163 (177)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998999


Q ss_pred             cccceEEeeeeeec
Q psy10359        187 PVQGVTIVDCGHTP  200 (249)
Q Consensus       187 P~~~i~I~~cg~l~  200 (249)
                      |.++|+|.+||+|.
T Consensus       164 P~~~v~I~~~G~l~  177 (177)
T 1a58_A          164 PLADVVILNCGELV  177 (177)
T ss_dssp             BSSCEEEEEEEEEC
T ss_pred             CCCCeEEEEeEEEC
Confidence            99999999999973

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2.4e-53  Score=350.98  Aligned_cols=164  Identities=49%  Similarity=0.853  Sum_probs=155.9

Q ss_pred             CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC---------CCccCCCEEEEeecCceeeecCCCCCC
Q psy10359         35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE---------GQGYKGSKFHRVIKDFMIQGGDYTKGD  105 (249)
Q Consensus        35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~---------g~~Y~g~~f~ri~~~~~iq~Gd~~~~~  105 (249)
                      ..+++|||||++++|+.|+|+||||++.||+||+||++||++..         ++ |+|+.|||++|+|||||||++.++
T Consensus         7 ~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~-Y~g~~FhRvi~~f~iQgGd~~~~~   85 (179)
T 2wfi_A            7 VQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLH-YKSCLFHRVVKDFMVQGGDFSEGN   85 (179)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCe-ECCCEEEEEECCCEEEcccccCCC
Confidence            34789999999999999999999999999999999999998643         34 999999999999999999998888


Q ss_pred             CCCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCC
Q psy10359        106 GTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRD  185 (249)
Q Consensus       106 ~~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~  185 (249)
                      +.++.++|+..|++|++.++|+++|+|||||.+|++|+|||||++.+++|||++|+|||||++|||||++|++++++.++
T Consensus        86 g~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~  165 (179)
T 2wfi_A           86 GRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAAS  165 (179)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTS
T ss_pred             CCCCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CcccceEEeeeeee
Q psy10359        186 RPVQGVTIVDCGHT  199 (249)
Q Consensus       186 ~P~~~i~I~~cg~l  199 (249)
                      +|.++|+|.+||+|
T Consensus       166 ~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          166 KPFAEVRILSCGEL  179 (179)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCeEEEeCeeC
Confidence            99999999999985

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=2.8e-53  Score=348.74  Aligned_cols=166  Identities=51%  Similarity=0.893  Sum_probs=156.0

Q ss_pred             CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359         33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI  112 (249)
Q Consensus        33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~  112 (249)
                      ....+++||||+++++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||+..+++.|+.++
T Consensus         7 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si   86 (173)
T 2r99_A            7 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSI   86 (173)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             cccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCCceecCCEEEEeeCCCEEEeCCcCCCCCCCCCcc
Confidence            34457899999999999999999999999999999999999987667779999999999999999999988888999999


Q ss_pred             CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359        113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT  192 (249)
Q Consensus       113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  192 (249)
                      |+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++ +++|.++|+
T Consensus        87 ~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~~~P~~~v~  165 (173)
T 2r99_A           87 YGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSK-DGKPKQKVI  165 (173)
T ss_dssp             TBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEE
T ss_pred             CCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCC-CCCCCCCeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999876 589999999


Q ss_pred             Eeeeeee
Q psy10359        193 IVDCGHT  199 (249)
Q Consensus       193 I~~cg~l  199 (249)
                      |.+||+|
T Consensus       166 I~~cG~l  172 (173)
T 2r99_A          166 IADCGEY  172 (173)
T ss_dssp             EEEEEEC
T ss_pred             EEEeeeE
Confidence            9999987

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=3e-53  Score=346.25  Aligned_cols=162  Identities=52%  Similarity=0.897  Sum_probs=155.4

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +++|||||++++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||++.+++.|+.++|+..
T Consensus         3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~   82 (165)
T 2z6w_A            3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR   82 (165)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCCccCcCCEEEEEECCCEEEeCCccCCCCCCCCcccCCc
Confidence            67999999999999999999999999999999999999976688899999999999999999999888889999999999


Q ss_pred             CCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeee
Q psy10359        117 FEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDC  196 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c  196 (249)
                      |++|+..++|.++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|+++++ .+++|.++|+|.+|
T Consensus        83 f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~-~~~~P~~~v~I~~~  161 (165)
T 2z6w_A           83 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVITDC  161 (165)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-TTSCCSSCEEEEEE
T ss_pred             ccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCC-CCCCCCCcEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999985 57899999999999


Q ss_pred             eee
Q psy10359        197 GHT  199 (249)
Q Consensus       197 g~l  199 (249)
                      |++
T Consensus       162 g~l  164 (165)
T 2z6w_A          162 GQL  164 (165)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            987

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=2.9e-53  Score=346.19  Aligned_cols=162  Identities=54%  Similarity=0.922  Sum_probs=156.3

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +++|||||.+++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||+..+++.++.++|+..
T Consensus         2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~si~g~~   81 (164)
T 3pmp_A            2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKSIYGEK   81 (164)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEECCCeEEeCCCCCCCCCCCcccCCcc
Confidence            57899999999999999999999999999999999999977788899999999999999999998878899999999999


Q ss_pred             CCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeee
Q psy10359        117 FEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDC  196 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c  196 (249)
                      +++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++ +++|.++|+|.+|
T Consensus        82 ~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~-~~~P~~~v~I~~c  160 (164)
T 3pmp_A           82 FADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKITDC  160 (164)
T ss_dssp             BCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSSCEEEEEE
T ss_pred             ccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCC-CCCcccCEEEEeC
Confidence            999999999999999999999999999999999999999999999999999999999999999987 7899999999999


Q ss_pred             eee
Q psy10359        197 GHT  199 (249)
Q Consensus       197 g~l  199 (249)
                      |+|
T Consensus       161 g~l  163 (164)
T 3pmp_A          161 GTV  163 (164)
T ss_dssp             EEC
T ss_pred             eEE
Confidence            997

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.7e-53  Score=351.36  Aligned_cols=166  Identities=51%  Similarity=0.860  Sum_probs=156.5

Q ss_pred             CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC---------CCccCCCEEEEeecCceeeecCCCCC
Q psy10359         34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE---------GQGYKGSKFHRVIKDFMIQGGDYTKG  104 (249)
Q Consensus        34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~---------g~~Y~g~~f~ri~~~~~iq~Gd~~~~  104 (249)
                      ...+++|||||++++|+.|+|+||||++.||+||+||++||++..         ++ |+|+.|||++|+|||||||+..+
T Consensus        16 ~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~-Y~g~~FhRVi~~fmiQgGd~~~~   94 (192)
T 2he9_A           16 PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLC-YKGSTFHRVVKNFMIQGGDFSEG   94 (192)
T ss_dssp             ---CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSC-CTTCBEEEEETTTEEEECCTTTS
T ss_pred             ccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCe-ECCCEEEEEECCCEEEcCcccCC
Confidence            457889999999999999999999999999999999999998643         34 99999999999999999999888


Q ss_pred             CCCCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC
Q psy10359        105 DGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR  184 (249)
Q Consensus       105 ~~~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~  184 (249)
                      ++.++.++|+..|++|++.++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++.+
T Consensus        95 ~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~  174 (192)
T 2he9_A           95 NGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAA  174 (192)
T ss_dssp             SSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTT
T ss_pred             CCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             CCcccceEEeeeeeec
Q psy10359        185 DRPVQGVTIVDCGHTP  200 (249)
Q Consensus       185 ~~P~~~i~I~~cg~l~  200 (249)
                      ++|.++|+|.+||++.
T Consensus       175 ~~P~~~v~I~~~g~l~  190 (192)
T 2he9_A          175 SRPYADVRVIDCGVLA  190 (192)
T ss_dssp             SCBSSCEEEEEEEECC
T ss_pred             CCCcCCeEEEEeEEEc
Confidence            9999999999999984

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=4.5e-53  Score=348.68  Aligned_cols=165  Identities=53%  Similarity=0.919  Sum_probs=156.8

Q ss_pred             CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC-----ccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ-----GYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~-----~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      +.+++||||+++++|+.|+|+||||++.||+||+||++||++++|.     +|+|+.|||++|+||+||||+..+++.|+
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~gg   87 (177)
T 1mzw_A            8 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV   87 (177)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCC
T ss_pred             CCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCCcCccceECCCEEEEEECCCEEEcCCcccCCCCCC
Confidence            4578999999999999999999999999999999999999995421     39999999999999999999988889999


Q ss_pred             CccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCccc
Q psy10359        110 ASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ  189 (249)
Q Consensus       110 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~  189 (249)
                      .++|+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++.+++|.+
T Consensus        88 ~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~  167 (177)
T 1mzw_A           88 ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKL  167 (177)
T ss_dssp             CCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSS
T ss_pred             CccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             ceEEeeeeee
Q psy10359        190 GVTIVDCGHT  199 (249)
Q Consensus       190 ~i~I~~cg~l  199 (249)
                      +|+|.+||+|
T Consensus       168 ~v~I~~cG~l  177 (177)
T 1mzw_A          168 PVVISQCGEM  177 (177)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeceeC
Confidence            9999999986

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=4.1e-53  Score=347.01  Aligned_cols=162  Identities=50%  Similarity=0.853  Sum_probs=154.3

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCc-------cCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIKDFMIQGGDYTKGDGTG  108 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~-------Y~g~~f~ri~~~~~iq~Gd~~~~~~~~  108 (249)
                      .+++||||+++++++.|+|+||||++.||+||+||++||++. |++       |+|+.|||++|+||+||||+..+++.|
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            468999999999999999999999999999999999999854 554       999999999999999999998888999


Q ss_pred             CCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc
Q psy10359        109 GASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV  188 (249)
Q Consensus       109 ~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~  188 (249)
                      +.++|+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|+++++ .+++|.
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t-~~~~P~  159 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGA-KSGYVK  159 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTCCCS
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 679999


Q ss_pred             cceEEeeeeee
Q psy10359        189 QGVTIVDCGHT  199 (249)
Q Consensus       189 ~~i~I~~cg~l  199 (249)
                      ++|+|.+||+|
T Consensus       160 ~~v~I~~cG~l  170 (170)
T 1qng_A          160 RSVVITDCGEL  170 (170)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCeEEEeceeC
Confidence            99999999985

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=6.5e-53  Score=346.69  Aligned_cols=164  Identities=55%  Similarity=0.975  Sum_probs=155.3

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCc-------cCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIKDFMIQGGDYTKGDGTG  108 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~-------Y~g~~f~ri~~~~~iq~Gd~~~~~~~~  108 (249)
                      .+++||||+++++++.|+|+||||++.||+||+||++||++++|++       |+|+.|||++|+||+||||+..+++.|
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   81 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCC
Confidence            3679999999999999999999999999999999999999865532       999999999999999999998888999


Q ss_pred             CCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc
Q psy10359        109 GASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV  188 (249)
Q Consensus       109 ~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~  188 (249)
                      +.++|+..|++|+..++|+++|+|||||.+|++|+|||||++.+++|||++|+|||||++|||||++|++++++ +++|.
T Consensus        82 g~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~-~~~P~  160 (173)
T 2igv_A           82 GESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPV  160 (173)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCS
T ss_pred             CCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCC-CCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999884 68999


Q ss_pred             cceEEeeeeeec
Q psy10359        189 QGVTIVDCGHTP  200 (249)
Q Consensus       189 ~~i~I~~cg~l~  200 (249)
                      ++|+|.+||++.
T Consensus       161 ~~v~I~~~g~l~  172 (173)
T 2igv_A          161 KDCMIADCGQLK  172 (173)
T ss_dssp             SCEEEEEEEEEC
T ss_pred             CCEEEEEeEEEc
Confidence            999999999984

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=6.3e-53  Score=349.70  Aligned_cols=169  Identities=51%  Similarity=0.879  Sum_probs=157.6

Q ss_pred             hcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        30 ~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      ..+.+..+++||||+++++++.|+|+||||++.||+||+||++||++++|++|+|+.|||++|+||+||||+..+++.++
T Consensus        15 ~~~~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg   94 (184)
T 3rdd_A           15 LYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGG   94 (184)
T ss_dssp             ------CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCcccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcccCCCEEEEccCCcEEEeCCCCCCCCCCC
Confidence            34455678999999999999999999999999999999999999998888889999999999999999999888889999


Q ss_pred             CccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCccc
Q psy10359        110 ASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ  189 (249)
Q Consensus       110 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~  189 (249)
                      .++|+..+++|+..++|+++|+||||+.+|++|+|||||++.++++||++|+|||||++|||||++|++++++ +++|.+
T Consensus        95 ~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~-~g~P~~  173 (184)
T 3rdd_A           95 KSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSR-NGKTSK  173 (184)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TSCCSS
T ss_pred             cccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCC-CCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999874 789999


Q ss_pred             ceEEeeeeee
Q psy10359        190 GVTIVDCGHT  199 (249)
Q Consensus       190 ~i~I~~cg~l  199 (249)
                      +|+|.+||+|
T Consensus       174 ~v~I~~cG~l  183 (184)
T 3rdd_A          174 KITIADCGQL  183 (184)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEeCeEE
Confidence            9999999998

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=7.1e-53  Score=349.56  Aligned_cols=168  Identities=52%  Similarity=0.872  Sum_probs=154.3

Q ss_pred             hcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCc-------cCCCEEEEeecCceeeecCCC
Q psy10359         30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIKDFMIQGGDYT  102 (249)
Q Consensus        30 ~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~-------Y~g~~f~ri~~~~~iq~Gd~~  102 (249)
                      .......+++||||+++++++.|+|+||||++.||+||+||++||+++.|++       |+|+.|||++|+||+||||+.
T Consensus        12 ~~~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~   91 (186)
T 2poy_A           12 ENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFT   91 (186)
T ss_dssp             ------CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTT
T ss_pred             cccccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCC
Confidence            3444567889999999999999999999999999999999999998766775       999999999999999999998


Q ss_pred             CCCCCCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCC
Q psy10359        103 KGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETD  182 (249)
Q Consensus       103 ~~~~~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~  182 (249)
                      .+++.|+.++|+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|+++++ 
T Consensus        92 ~~~G~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t-  170 (186)
T 2poy_A           92 RGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGS-  170 (186)
T ss_dssp             TSSSSCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCC-
T ss_pred             CCCCCCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCC-
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCCCcccceEEeeeee
Q psy10359        183 GRDRPVQGVTIVDCGH  198 (249)
Q Consensus       183 ~~~~P~~~i~I~~cg~  198 (249)
                      .+++|.++|+|.+||+
T Consensus       171 ~~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          171 QNGKPTKSVCITASGV  186 (186)
T ss_dssp             TTSCCSSCEEEEEEEC
T ss_pred             CCCCCCCCEEEEeCCC
Confidence            4789999999999995

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.3e-51  Score=344.04  Aligned_cols=165  Identities=51%  Similarity=0.882  Sum_probs=157.3

Q ss_pred             CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCC
Q psy10359         35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYG  114 (249)
Q Consensus        35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~  114 (249)
                      ..+++|||||++++|+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+|++||||+..+++.++.++|+
T Consensus        25 ~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~Y~g~~FhRvi~~f~iQgGd~~~~~g~gg~si~g  104 (193)
T 3k2c_A           25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYG  104 (193)
T ss_dssp             -CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSSSTTCBEEEEETTTEEEECCTTTSSSSCCCCTTS
T ss_pred             cCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCcccCCEEEEEeCCCEEEeCCCCCCCCcCCcccCC
Confidence            45678999999999999999999999999999999999999877888999999999999999999988888999999999


Q ss_pred             CCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc--cceE
Q psy10359        115 DKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV--QGVT  192 (249)
Q Consensus       115 ~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~--~~i~  192 (249)
                      ..+++|+..++|+++|+|||||.++++|+|||||++.++++||++|+|||||++|||||++|++++++ +++|.  ++|+
T Consensus       105 ~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~-~g~P~~~~~v~  183 (193)
T 3k2c_A          105 EKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSE-SGQVKKGYRIE  183 (193)
T ss_dssp             SCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCCTTCCEE
T ss_pred             CcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCC-CCcCccCccEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999987 67999  9999


Q ss_pred             Eeeeeeec
Q psy10359        193 IVDCGHTP  200 (249)
Q Consensus       193 I~~cg~l~  200 (249)
                      |.+||+|.
T Consensus       184 I~~cG~l~  191 (193)
T 3k2c_A          184 IRDCGVLG  191 (193)
T ss_dssp             EEEEEECC
T ss_pred             EEEceEeC
Confidence            99999984

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=3.1e-52  Score=342.25  Aligned_cols=163  Identities=55%  Similarity=0.949  Sum_probs=124.9

Q ss_pred             cccEEEEEEEEC--c---eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCC
Q psy10359         36 VTDIVWFQIQIG--E---VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGA  110 (249)
Q Consensus        36 ~t~~v~~di~i~--~---t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~  110 (249)
                      +| +|||||+++  +   |+.|+|+||||++.||+||+||++||+++.|++|+|+.|||++|+||+||||+..+++.|+.
T Consensus         2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~Y~g~~fhRvi~~f~iQgGd~~~~~g~gg~   80 (172)
T 2c3b_A            2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR   80 (172)
T ss_dssp             CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC----------
T ss_pred             ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcccCCCEEEEEeCCCEEEeCCcCCCCCCCCc
Confidence            57 999999998  5   56699999999999999999999999987788899999999999999999997778889999


Q ss_pred             ccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc--cHHHHHHHHhCCCCCCC-Cc
Q psy10359        111 SIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT--GGDIVKKIESSETDGRD-RP  187 (249)
Q Consensus       111 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~--G~~vl~~I~~~~~~~~~-~P  187 (249)
                      ++|+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++  |||||++|++++++..+ +|
T Consensus        81 si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P  160 (172)
T 2c3b_A           81 SIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRS  160 (172)
T ss_dssp             ------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCS
T ss_pred             ccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccC
Confidence            9999999999989999999999999999999999999999999999999999999999  99999999999998655 99


Q ss_pred             ccceEEeeeeee
Q psy10359        188 VQGVTIVDCGHT  199 (249)
Q Consensus       188 ~~~i~I~~cg~l  199 (249)
                      .++|+|.+||+|
T Consensus       161 ~~~v~I~~cG~l  172 (172)
T 2c3b_A          161 NTRPKIVNCGEL  172 (172)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999985

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.3e-50  Score=344.92  Aligned_cols=164  Identities=46%  Similarity=0.838  Sum_probs=155.8

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC-----ccCCCEEEEeecCceeeecCCCCCCCCCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ-----GYKGSKFHRVIKDFMIQGGDYTKGDGTGGA  110 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~-----~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~  110 (249)
                      .+++||||+++++|+.|+|+||||++.||+||+||++||++++|.     .|+|+.||||+|+|||||||++.+++.|+.
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~Gg~  137 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSL  137 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCcCCCceECCCEEEEEeCCCEEEcCCCcCCCCCCCC
Confidence            478999999999999999999999999999999999999985431     399999999999999999999888899999


Q ss_pred             ccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEE--ccHHHHHHHHhCCCCCC-CCc
Q psy10359        111 SIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI--TGGDIVKKIESSETDGR-DRP  187 (249)
Q Consensus       111 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi--~G~~vl~~I~~~~~~~~-~~P  187 (249)
                      ++|+..|++|+..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||+  +|||||++|++++++.+ ++|
T Consensus       138 siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P  217 (229)
T 1z81_A          138 SIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKP  217 (229)
T ss_dssp             BTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCB
T ss_pred             ccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999  99999999999999887 999


Q ss_pred             ccceEEeeeeee
Q psy10359        188 VQGVTIVDCGHT  199 (249)
Q Consensus       188 ~~~i~I~~cg~l  199 (249)
                      .++|+|.+||+|
T Consensus       218 ~~~V~I~~cG~l  229 (229)
T 1z81_A          218 KIPINVVECGEL  229 (229)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999985

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.4e-50  Score=346.64  Aligned_cols=173  Identities=28%  Similarity=0.468  Sum_probs=155.3

Q ss_pred             CCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCC-----------C----C--CccCCCEEEEeecCc
Q psy10359         32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRP-----------E----G--QGYKGSKFHRVIKDF   94 (249)
Q Consensus        32 ~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~-----------~----g--~~Y~g~~f~ri~~~~   94 (249)
                      +....+++|||||++++|+.|+|+||||.+.||+||+||++||+++           .    |  ++|+|+.||||+|+|
T Consensus         9 p~~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~~F   88 (234)
T 2ose_A            9 PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHNN   88 (234)
T ss_dssp             CCCCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEETTT
T ss_pred             CcCCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEECCC
Confidence            4445688999999999999999999999999999999999999975           3    4  569999999999999


Q ss_pred             eeeecCCCCCCCCCCCccCCCC-----CCCCcccCCCCcceEEEEec----CCCCCCCceEEEEcCC------CCCCCCC
Q psy10359         95 MIQGGDYTKGDGTGGASIYGDK-----FEDENFKLSHYGSGWLSMAN----AGKDTNGSQFFITTKK------TPWLDGR  159 (249)
Q Consensus        95 ~iq~Gd~~~~~~~~~~~~~~~~-----~~~e~~~~~h~~~G~vsm~~----~~~~~~~SqFfItl~~------~~~ld~~  159 (249)
                      ||||||+..+++.|+.++||..     |+  ++.++|+++|+|||||    .+|++|+|||||++.+      ++|||++
T Consensus        89 miQgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~  166 (234)
T 2ose_A           89 YIVSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRD  166 (234)
T ss_dssp             EEEECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTT
T ss_pred             EEEcCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCC
Confidence            9999998778899999999987     66  4589999999999999    8999999999999999      9999999


Q ss_pred             ceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeeeeccCCCchhh
Q psy10359        160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDV  208 (249)
Q Consensus       160 ~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~p~~~v  208 (249)
                      |+|||||++|||||++|++++++.+++|.++|+|.+||++  .+||.+.
T Consensus       167 ~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l--~~p~~~~  213 (234)
T 2ose_A          167 QVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAY--LDSSQAQ  213 (234)
T ss_dssp             SEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEEC--CCHHHHC
T ss_pred             eeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEe--cCCcccc
Confidence            9999999999999999999999988999999999999999  5677654

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=5.5e-50  Score=334.39  Aligned_cols=174  Identities=40%  Similarity=0.704  Sum_probs=160.6

Q ss_pred             hcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        30 ~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      +...|+....|.|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+. +++.|+
T Consensus        12 ~~~~~~~~~~v~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~--g~-Ydg~~FhRVi~~f~iQgGd~~-~~g~Gg   82 (197)
T 1zkc_A           12 SGLVPRGSGYVRLH-----TNKGDLNLELHCDLTPKTCENFIRLCKK--HY-YDGTIFHRSIRNFVIQGGDPT-GTGTGG   82 (197)
T ss_dssp             CCCCCCSCEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHT--TT-TTTEEEEEEETTTEEEECCTT-SSSSCC
T ss_pred             cCCCCCCCcEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHHhc--CC-CCCCEEEEEeCCCEEEcCCCC-CCCCCC
Confidence            34555556666666     9999999999999999999999999998  67 999999999999999999987 778889


Q ss_pred             CccCCCCCCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC-CCc
Q psy10359        110 ASIYGDKFEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRP  187 (249)
Q Consensus       110 ~~~~~~~~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~-~~P  187 (249)
                      .++||..|++|. ..++|+.+|+|||||.+|++|+|||||++.++++||++|+|||+|++|||||++|++++++.+ ++|
T Consensus        83 ~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P  162 (197)
T 1zkc_A           83 ESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRP  162 (197)
T ss_dssp             CBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCB
T ss_pred             CccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCc
Confidence            999999999994 778999999999999999999999999999999999999999999999999999999999987 999


Q ss_pred             ccceEEeeeeeeccCCCchhhhhhhcc
Q psy10359        188 VQGVTIVDCGHTPVEEPFSDVVKKIES  214 (249)
Q Consensus       188 ~~~i~I~~cg~l~~~~p~~~vv~~iE~  214 (249)
                      ..+|+|.+|+++  .+||.+..+++++
T Consensus       163 ~~~i~I~~~~v~--~dPf~d~~~~~~~  187 (197)
T 1zkc_A          163 KEEIRIDATTVF--VDPYEEADAQIAQ  187 (197)
T ss_dssp             SSCCEEEEEEEE--ECTTHHHHHHHHH
T ss_pred             CCCeEEEEEEEE--cCCcccHHHHHHH
Confidence            999999999998  6899999888765

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=2e-49  Score=328.73  Aligned_cols=153  Identities=42%  Similarity=0.731  Sum_probs=144.4

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCc-ccCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN-FKLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~~h~  127 (249)
                      |+.|+|+||||++.||+||+||++||++  |+ |+|+.|||++|+||+||||+. +++.|+.++|+..|++|. ..++|+
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~   98 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALSAS--GY-YKNTIFHKNIKGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYD   98 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTEEEEEECTTSEEEEEETT-SSSSCCCBTTBSCBCCCCCTTSCCC
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHhcc--CC-CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCCcccccccCCCccC
Confidence            9999999999999999999999999999  66 999999999999999999988 778889999999999998 679999


Q ss_pred             cceEEEEecCC----CCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeeeeccCC
Q psy10359        128 GSGWLSMANAG----KDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEE  203 (249)
Q Consensus       128 ~~G~vsm~~~~----~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~  203 (249)
                      ++|+|||||.+    |++|+|||||++.++++||++|+|||||++||+||++|++++++.+++|.++|+|.+|+++  .|
T Consensus        99 ~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~--~d  176 (185)
T 2poe_A           99 RRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIH--SN  176 (185)
T ss_dssp             STTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEE--CC
T ss_pred             CCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEE--CC
Confidence            99999999999    9999999999999999999999999999999999999999999988999999999999999  68


Q ss_pred             Cchh
Q psy10359        204 PFSD  207 (249)
Q Consensus       204 p~~~  207 (249)
                      ||.+
T Consensus       177 Pf~d  180 (185)
T 2poe_A          177 PIAD  180 (185)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            9865

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.8e-49  Score=322.74  Aligned_cols=153  Identities=46%  Similarity=0.746  Sum_probs=145.5

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~  127 (249)
                      |+.|+|+||||++.||+||+||++||++  |+ |+|+.|||++|+||+||||+. +++.|+.++|+..+++|.. .++|+
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~~~~l~h~   82 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCAS--NY-YNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEYSEYLKHN   82 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCCTTCCSC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhh--cc-cCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCccccccCcCcCcC
Confidence            9999999999999999999999999999  66 999999999999999999988 7788899999999999985 68999


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC-CCcccceEEeeeeeeccCCCch
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFS  206 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~-~~P~~~i~I~~cg~l~~~~p~~  206 (249)
                      ++|+||||+.+|++|+|||||++.++++||++|+|||||++||+||++|++++++.+ ++|.++|+|.+|+++  .|||+
T Consensus        83 ~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~--~~Pf~  160 (161)
T 2ok3_A           83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH--ANPFA  160 (161)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE--CCSCC
T ss_pred             CCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEe--cCCCC
Confidence            999999999999999999999999999999999999999999999999999999887 999999999999998  68986


Q ss_pred             h
Q psy10359        207 D  207 (249)
Q Consensus       207 ~  207 (249)
                      +
T Consensus       161 d  161 (161)
T 2ok3_A          161 Q  161 (161)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=2.2e-49  Score=332.86  Aligned_cols=170  Identities=35%  Similarity=0.573  Sum_probs=142.5

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeec-----CCCCCCCCCCCc
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG-----DYTKGDGTGGAS  111 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~G-----d~~~~~~~~~~~  111 (249)
                      +..|.|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+|||     |+. +++.|+.+
T Consensus         6 ~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Ydg~~FhRvi~~f~iQgG~~~~~Dp~-~~g~gg~s   76 (201)
T 3bo7_A            6 KGYLRIV-----TTQGSLNIELHADMAPRACDSFLRLCAV--KY-FDDTIFHRCIRNFMIQGGRAELRQPS-KKKEVQQS   76 (201)
T ss_dssp             CEEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBEEEEETTTEEEECCGGGCCC--------CC
T ss_pred             ceEEEEE-----eCCCCEEEEEcCCCCcHHHHHHHHHHhc--Cc-cCCCEEEEeeCCCEEEcCcccccCCC-CCCCCCcc
Confidence            4445555     9999999999999999999999999999  66 999999999999999999     987 77888889


Q ss_pred             cC-------CCCCCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCC
Q psy10359        112 IY-------GDKFEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDG  183 (249)
Q Consensus       112 ~~-------~~~~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~  183 (249)
                      +|       +..|++|. ..++|+.+|+||||+.+|++|+|||||++.++++||++|+|||+|++|||||++|++++++.
T Consensus        77 i~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~  156 (201)
T 3bo7_A           77 PRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDK  156 (201)
T ss_dssp             SSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCT
T ss_pred             ccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCC
Confidence            98       88999994 67899999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccceEEeeeeeeccCCCchhhhhhhccccC
Q psy10359        184 RDRPVQGVTIVDCGHTPVEEPFSDVVKKIESSET  217 (249)
Q Consensus       184 ~~~P~~~i~I~~cg~l~~~~p~~~vv~~iE~~~~  217 (249)
                      +++|.++|+|.+|+++  .+||.+..++++....
T Consensus       157 ~~~P~~~i~I~~~~v~--~dPf~d~~~~~~~~~~  188 (201)
T 3bo7_A          157 KDKPLKPPKVEEIIVF--KNPFEDARKEMEDEKR  188 (201)
T ss_dssp             TSCBSSCCBEEEEEEE--ECCC------------
T ss_pred             CCCcCCCeEEEEEEEE--cCCccCHHHHHHHHHH
Confidence            9999999999999999  6899999887765443

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.4e-48  Score=318.77  Aligned_cols=155  Identities=52%  Similarity=0.893  Sum_probs=146.8

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD  115 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~  115 (249)
                      -+.+|.|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+. +++.++.++|+.
T Consensus        10 ~~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~   80 (166)
T 2x7k_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARR--GY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGK   80 (166)
T ss_dssp             CCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHH--TT-TTTEECCEEETTTEEEECCTT-SSSSCCCCTTSS
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHhc--CC-CCCCEEEEEECCCEEEcCCCC-CCCCCCCccCCC
Confidence            35678887     9999999999999999999999999998  66 999999999999999999987 778889999999


Q ss_pred             CCCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEe
Q psy10359        116 KFEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV  194 (249)
Q Consensus       116 ~~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~  194 (249)
                      .|++|. ..++|.++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++.+++|.++|+|.
T Consensus        81 ~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~  160 (166)
T 2x7k_A           81 QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII  160 (166)
T ss_dssp             CBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEE
T ss_pred             ccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            999998 4799998999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             eeeee
Q psy10359        195 DCGHT  199 (249)
Q Consensus       195 ~cg~l  199 (249)
                      +|.++
T Consensus       161 ~~~i~  165 (166)
T 2x7k_A          161 KAYPS  165 (166)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99875

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=2.7e-48  Score=324.12  Aligned_cols=157  Identities=41%  Similarity=0.693  Sum_probs=145.8

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +.+|.|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+. +++.|+.++||..
T Consensus        38 ~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~--g~-Y~g~~FhRVi~~f~iQgGd~~-~~g~gg~si~g~~  108 (196)
T 2b71_A           38 RGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCEM--GF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEY  108 (196)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHT--TT-TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSC
T ss_pred             CcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhhc--CC-cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCCc
Confidence            4678887     9999999999999999999999999999  66 999999999999999999987 7788899999999


Q ss_pred             CCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        117 FEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       117 ~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      |++|. ..++|+++|+||||+.+|++|+|||||++.++++||++|+|||||++||+||++|++++++.+++|.++|+|.+
T Consensus       109 ~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~  188 (196)
T 2b71_A          109 FEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILR  188 (196)
T ss_dssp             BCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEE
T ss_pred             ccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEE
Confidence            99995 57899999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             eeeeccCCC
Q psy10359        196 CGHTPVEEP  204 (249)
Q Consensus       196 cg~l~~~~p  204 (249)
                      |+++  .||
T Consensus       189 ~~i~--~dP  195 (196)
T 2b71_A          189 TSTA--VNA  195 (196)
T ss_dssp             EEC------
T ss_pred             EEEe--cCC
Confidence            9988  445

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=2.7e-48  Score=315.33  Aligned_cols=154  Identities=49%  Similarity=0.781  Sum_probs=145.1

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      ...|.++     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+. +++.|+.++|+..
T Consensus         5 ~~~v~~~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~   75 (160)
T 2fu0_A            5 PKSAIIY-----TTMGDIHISLFYKECKKTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNE   75 (160)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHhcc--Cc-cCCCEEEEEECCCEEEeCCcC-CCCCCCCcccCCC
Confidence            3456666     9999999999999999999999999999  66 999999999999999999986 7788899999999


Q ss_pred             CCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        117 FEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       117 ~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      |++|.. .++|+++|+||||+.+|++|+|||||++.++++||++|+|||||++|||||++|++++++.+++|.++|+|.+
T Consensus        76 ~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~  155 (160)
T 2fu0_A           76 FEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN  155 (160)
T ss_dssp             BCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEE
T ss_pred             ccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEE
Confidence            999987 5899999999999999999999999999999999999999999999999999999999998899999999999


Q ss_pred             eeee
Q psy10359        196 CGHT  199 (249)
Q Consensus       196 cg~l  199 (249)
                      |.++
T Consensus       156 ~~v~  159 (160)
T 2fu0_A          156 IKIN  159 (160)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9875

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=5.2e-48  Score=320.11  Aligned_cols=166  Identities=38%  Similarity=0.706  Sum_probs=152.7

Q ss_pred             hcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         30 VAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        30 ~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      ....|+.+.+|+|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+. +++.|+
T Consensus        17 ~~~~~~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~--g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   87 (185)
T 2hq6_A           17 RGSEPPTNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLCLE--AY-YDNTIFHRVVPGFIVQGGDPT-GTGSGG   87 (185)
T ss_dssp             TTCCCCCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHT--TT-TTTEECCEEETTTEEEECCTT-SSSSCC
T ss_pred             cccCCCCCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHhhc--Cc-cCCCEEEEEECCCEEEcCCCC-CCCCCC
Confidence            34556678899998     8899999999999999999999999999  66 999999999999999999987 778888


Q ss_pred             CccCCCCCCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHH--HHHHHhCCCCCCCC
Q psy10359        110 ASIYGDKFEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDI--VKKIESSETDGRDR  186 (249)
Q Consensus       110 ~~~~~~~~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~v--l~~I~~~~~~~~~~  186 (249)
                      .++|+..|++|.. .++|+++|+|||||.++++|+|||||++.++++||++|+|||||+ |+++  +++|++++++.+++
T Consensus        88 ~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~  166 (185)
T 2hq6_A           88 ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDER  166 (185)
T ss_dssp             CCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSC
T ss_pred             CcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCC
Confidence            9999999999986 688999999999999999999999999999999999999999999 8876  47899999998999


Q ss_pred             cccceEEeeeeeeccCCCchh
Q psy10359        187 PVQGVTIVDCGHTPVEEPFSD  207 (249)
Q Consensus       187 P~~~i~I~~cg~l~~~~p~~~  207 (249)
                      |.++|+|.+|+++  .|||++
T Consensus       167 P~~~v~I~~~~v~--~~Pf~d  185 (185)
T 2hq6_A          167 PHNPHKIKSCEVL--FNPFDD  185 (185)
T ss_dssp             BSSCCEEEEEEEE--ECTTC-
T ss_pred             CCCCeEEEEEEEe--CCCCCC
Confidence            9999999999999  689864

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=1.4e-47  Score=315.30  Aligned_cols=153  Identities=46%  Similarity=0.793  Sum_probs=143.3

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      ...|.++     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+. +++.|+.++|+..
T Consensus        21 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~FhRvi~~f~iQgGd~~-~~g~gg~si~g~~   91 (176)
T 2a2n_A           21 SDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSRN--GY-YNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGE   91 (176)
T ss_dssp             CSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHhhc--Cc-cCCCEEEEEECCcEEEccCCC-CCCCCCCcccCCc
Confidence            4455665     9999999999999999999999999999  66 999999999999999999986 6788899999999


Q ss_pred             CCCCcc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCC-CCCCcccceEEe
Q psy10359        117 FEDENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETD-GRDRPVQGVTIV  194 (249)
Q Consensus       117 ~~~e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~-~~~~P~~~i~I~  194 (249)
                      |++|.. .++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++ .+++|.++|+|.
T Consensus        92 ~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~  171 (176)
T 2a2n_A           92 FEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSII  171 (176)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEE
T ss_pred             cccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEE
Confidence            999987 599999999999999999999999999999999999999999999999999999999998 689999999999


Q ss_pred             eeee
Q psy10359        195 DCGH  198 (249)
Q Consensus       195 ~cg~  198 (249)
                      +|.+
T Consensus       172 ~v~v  175 (176)
T 2a2n_A          172 NITV  175 (176)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9864

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=1.9e-47  Score=320.20  Aligned_cols=156  Identities=52%  Similarity=0.884  Sum_probs=147.6

Q ss_pred             cccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC
Q psy10359         36 VTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD  115 (249)
Q Consensus        36 ~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~  115 (249)
                      -+.+|.|+     |+.|+|+||||++.||+||+||++||+.  |+ |+++.|||++|+||+||||+. +++.++.++|+.
T Consensus        10 ~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~--g~-Ydg~~FhRVi~~F~iQgGd~~-~~g~gg~si~g~   80 (203)
T 2k7n_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARR--GY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGK   80 (203)
T ss_dssp             CCSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHHH--TC-GGGCEEEEEETTTEEEEECSS-SSSSCCCTTSCS
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHhc--Cc-cCCCEEEEEeCCcEEEcCCCC-CCCCCCCccCCC
Confidence            35678888     9999999999999999999999999998  66 999999999999999999987 678888999999


Q ss_pred             CCCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEe
Q psy10359        116 KFEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIV  194 (249)
Q Consensus       116 ~~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~  194 (249)
                      .|++|. ..++|.++|+|||||.+|++|+|||||++.++++||++|+|||||++|||||++|++++++.+++|.++|+|.
T Consensus        81 ~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~  160 (203)
T 2k7n_A           81 QFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKII  160 (203)
T ss_dssp             CBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEE
T ss_pred             cccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEE
Confidence            999998 4799998999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             eeeeec
Q psy10359        195 DCGHTP  200 (249)
Q Consensus       195 ~cg~l~  200 (249)
                      +|+++.
T Consensus       161 ~~~v~~  166 (203)
T 2k7n_A          161 KAYPSG  166 (203)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            999984

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=4e-47  Score=346.07  Aligned_cols=167  Identities=51%  Similarity=0.894  Sum_probs=157.9

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC--------ccCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ--------GYKGSKFHRVIKDFMIQGGDYTKGDGTG  108 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~--------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~  108 (249)
                      +++||||+++++++.|+|+||||++.||+||+||++||++..|+        .|+|+.||||+|+|||||||++.++|.|
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            78999999999999999999999999999999999999985432        3999999999999999999999889999


Q ss_pred             CCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc
Q psy10359        109 GASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV  188 (249)
Q Consensus       109 ~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~  188 (249)
                      +.++||..|++|+..++|+.+|+|||+|.+|++||||||||+.+++|||++|+|||+|++||+||++|++.+++. ++|.
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~-~~P~  173 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPA  173 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEET-TEES
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCC-Cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999876 9999


Q ss_pred             cceEEeeeeeeccCCC
Q psy10359        189 QGVTIVDCGHTPVEEP  204 (249)
Q Consensus       189 ~~i~I~~cg~l~~~~p  204 (249)
                      .+|+|.+||++....+
T Consensus       174 ~~v~I~~~g~l~~~~~  189 (370)
T 1ihg_A          174 KLCVIAECGELKEGDD  189 (370)
T ss_dssp             SCEEEEEEEEECTTCC
T ss_pred             eeEEEEEEEEeccCcc
Confidence            9999999999965443

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.3e-47  Score=327.79  Aligned_cols=175  Identities=33%  Similarity=0.576  Sum_probs=158.5

Q ss_pred             hhcCCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359         29 KVAKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTG  108 (249)
Q Consensus        29 ~~~~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~  108 (249)
                      .....|+.+.+|+|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.||||+|+|||||||+. +++.|
T Consensus        13 ~~~~~p~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~--g~-Ydgt~FhRVi~~FmiQgGdp~-~~G~G   83 (232)
T 3bkp_A           13 NLYFQGSTRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLCLE--GY-YVNTIFHRVVKDFIVQGGDPT-GTGRG   83 (232)
T ss_dssp             GGGCCCSCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHH--TT-TTTCBEEEEETTTEEEECCTT-SSSSC
T ss_pred             cccccCCCCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHhhc--Cc-cCCCEEEEEeCCCEEEcCCCC-CCCCC
Confidence            445567778899998     8999999999999999999999999999  66 999999999999999999988 77888


Q ss_pred             CCccC--CCCCCCCcc-cCCCCcceEEEEecCCC--------------CCCCceEEEEcCCCCCCCCCceEEEEEEccHH
Q psy10359        109 GASIY--GDKFEDENF-KLSHYGSGWLSMANAGK--------------DTNGSQFFITTKKTPWLDGRHVVFGKVITGGD  171 (249)
Q Consensus       109 ~~~~~--~~~~~~e~~-~~~h~~~G~vsm~~~~~--------------~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~  171 (249)
                      +.++|  +..|++|.. .++|+.+|+||||+.++              ++|+|||||++.++++||++|+|||+|+ ||+
T Consensus        84 g~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~  162 (232)
T 3bkp_A           84 GADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHT  162 (232)
T ss_dssp             CCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGG
T ss_pred             CCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCc
Confidence            99999  899999985 68899999999999987              6999999999999999999999999999 776


Q ss_pred             H--HHHHHhCCCCCCCCcccceEEeeeeeeccCCCchhhhhhhccc
Q psy10359        172 I--VKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKKIESS  215 (249)
Q Consensus       172 v--l~~I~~~~~~~~~~P~~~i~I~~cg~l~~~~p~~~vv~~iE~~  215 (249)
                      |  |++|++++++.+++|.++|+|.+|+++  .|||.+++.++...
T Consensus       163 v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl--~dPf~d~~~~~~~~  206 (232)
T 3bkp_A          163 LYNLMKFNDLEVGKEDRPMTPPFIKSVDVL--WNPFEDLVPRRLPD  206 (232)
T ss_dssp             HHHHHHHTTSCBCGGGCBSSCCBEEEEEEE--ECCCTTCCCSSCCC
T ss_pred             hHHHHHHHcCCcCCCCCcCCCeEEEEEEEE--cCChhhhhhccccc
Confidence            5  899999999989999999999999999  68999998776543

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=5.4e-47  Score=315.32  Aligned_cols=157  Identities=48%  Similarity=0.743  Sum_probs=141.3

Q ss_pred             CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC-------------CCccCCCEEEEeecCceeeec
Q psy10359         33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE-------------GQGYKGSKFHRVIKDFMIQGG   99 (249)
Q Consensus        33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~-------------g~~Y~g~~f~ri~~~~~iq~G   99 (249)
                      .|+.+.+|.|+     |+.|+|+||||++.||+||+||++||+|.+             ++ |+|+.|||++|+||||||
T Consensus        19 ~~~~~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~-Y~g~~FhRVi~~fmiQgG   92 (191)
T 1w74_A           19 SPLATATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPF-YDGAVFHRVIQGFMIQGG   92 (191)
T ss_dssp             --CCSEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCS-STTEEEEEEETTTEEEEC
T ss_pred             CCCCCeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCc-cCCCEEEEEeCCCEEecC
Confidence            44556677776     999999999999999999999999996532             45 999999999999999999


Q ss_pred             CCCCCCCCCCCccCCCCCCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEc--cHHHHHHH
Q psy10359        100 DYTKGDGTGGASIYGDKFEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVIT--GGDIVKKI  176 (249)
Q Consensus       100 d~~~~~~~~~~~~~~~~~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~--G~~vl~~I  176 (249)
                      |+. +++.|+   ++..|++|. ..++|+++|+|||||.+|++|+|||||++.++++||++|+|||||++  ||+||++|
T Consensus        93 d~~-g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I  168 (191)
T 1w74_A           93 DPT-GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAI  168 (191)
T ss_dssp             CTT-SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHH
T ss_pred             CCC-CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHH
Confidence            975 566665   578899994 68999999999999999999999999999999999999999999999  99999999


Q ss_pred             HhCCCCCCCCcccceEEeeeeee
Q psy10359        177 ESSETDGRDRPVQGVTIVDCGHT  199 (249)
Q Consensus       177 ~~~~~~~~~~P~~~i~I~~cg~l  199 (249)
                      ++++++.+++|.++|+|.+|+++
T Consensus       169 ~~~~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          169 SKTATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             HTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             HcCCcCCCCCcCCCeEEEEEEEC
Confidence            99999988999999999999874

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=2e-45  Score=300.37  Aligned_cols=152  Identities=33%  Similarity=0.505  Sum_probs=136.3

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +++|+|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+....+   ...++.+
T Consensus         4 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~g~~   72 (166)
T 1v9t_A            4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNS--GF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPP   72 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBEEEEETTTEEEESSBCTTCC---BCCCCCC
T ss_pred             CeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhcc--CC-CCCCEEEEEECCcEEEcCCcCcCCC---CCCCCCc
Confidence            4678888     9999999999999999999999999998  66 9999999999999999999875432   2345778


Q ss_pred             CCCCcccCCCCcceEEEEecC-CCCCCCceEEEEcCCCCCCCCC-----ceEEEEEEccHHHHHHHHhCCCCC----CCC
Q psy10359        117 FEDENFKLSHYGSGWLSMANA-GKDTNGSQFFITTKKTPWLDGR-----HVVFGKVITGGDIVKKIESSETDG----RDR  186 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~-~~~~~~SqFfItl~~~~~ld~~-----~~vFG~Vi~G~~vl~~I~~~~~~~----~~~  186 (249)
                      |++|.....|+.+|+|||||. +|++|+|||||++.++++||++     |+|||||++|||||++|++++++.    +++
T Consensus        73 ~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~  152 (166)
T 1v9t_A           73 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNV  152 (166)
T ss_dssp             BCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEE
T ss_pred             ccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCC
Confidence            999987655667999999997 5999999999999999999998     999999999999999999999876    478


Q ss_pred             cccceEEeeeeee
Q psy10359        187 PVQGVTIVDCGHT  199 (249)
Q Consensus       187 P~~~i~I~~cg~l  199 (249)
                      |.++|+|.+|+++
T Consensus       153 P~~~v~I~~~~v~  165 (166)
T 1v9t_A          153 PSKPVVILSATVL  165 (166)
T ss_dssp             ESSCCBEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999999876

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=1.9e-45  Score=300.04  Aligned_cols=144  Identities=33%  Similarity=0.538  Sum_probs=131.7

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCccc-CCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFK-LSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~-~~h~  127 (249)
                      |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+||+||||+..+.   +.+.++.+|++|... ++| 
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~~~~l~~-   78 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCRE--GF-YNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEANNGLKN-   78 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHT--TT-TTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCCCSSCCC-
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHhc--CC-CCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccccccccc-
Confidence            9999999999999999999999999998  67 999999999999999999987443   345678899999865 666 


Q ss_pred             cceEEEEecC-CCCCCCceEEEEcCCCCCCCCC--------ceEEEEEEccHHHHHHHHhCCCCC----CCCcccceEEe
Q psy10359        128 GSGWLSMANA-GKDTNGSQFFITTKKTPWLDGR--------HVVFGKVITGGDIVKKIESSETDG----RDRPVQGVTIV  194 (249)
Q Consensus       128 ~~G~vsm~~~-~~~~~~SqFfItl~~~~~ld~~--------~~vFG~Vi~G~~vl~~I~~~~~~~----~~~P~~~i~I~  194 (249)
                      .+|+||||++ +|++|+|||||++.++++||++        |+|||||++|||||++|++++++.    +++|.++|+|.
T Consensus        79 ~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~  158 (164)
T 1lop_A           79 TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIE  158 (164)
T ss_dssp             CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEE
T ss_pred             CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEE
Confidence            5999999975 7999999999999999999998        999999999999999999999875    58999999999


Q ss_pred             eeeee
Q psy10359        195 DCGHT  199 (249)
Q Consensus       195 ~cg~l  199 (249)
                      +|+++
T Consensus       159 ~~~v~  163 (164)
T 1lop_A          159 SVTVS  163 (164)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99986

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=9.5e-45  Score=296.83  Aligned_cols=151  Identities=33%  Similarity=0.523  Sum_probs=134.0

Q ss_pred             cEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCC
Q psy10359         38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKF  117 (249)
Q Consensus        38 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~  117 (249)
                      ++|.|+     |+.|+|+||||++.||+||+||++||+.  |+ |+|+.|||++|+|||||||+..+.+   ...++.++
T Consensus         4 ~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~--g~-Y~g~~FhRvi~~f~iQgGd~~~~~~---~~~~~~~~   72 (167)
T 3s6m_A            4 SMVELH-----TNHGVIKLELDEAKAPKTVENFLNYVKK--GH-YDGTIFHRVINGFMIQGGGFEPGLK---QKPTDAPI   72 (167)
T ss_dssp             CEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHH--TT-TTTEECCEEETTTEEEESSEETTTE---ECCCCCCB
T ss_pred             cEEEEE-----eCCceEEEEEeCCCCcHHHHHHHHHhhh--cc-cCCCEeEEecCCcEEEeccccCCCC---CCCCCCcc
Confidence            456666     9999999999999999999999999999  66 9999999999999999999875432   23457788


Q ss_pred             CCCcccCCCCcceEEEEec-CCCCCCCceEEEEcCCCCCCCCC--------ceEEEEEEccHHHHHHHHhCCCCC----C
Q psy10359        118 EDENFKLSHYGSGWLSMAN-AGKDTNGSQFFITTKKTPWLDGR--------HVVFGKVITGGDIVKKIESSETDG----R  184 (249)
Q Consensus       118 ~~e~~~~~h~~~G~vsm~~-~~~~~~~SqFfItl~~~~~ld~~--------~~vFG~Vi~G~~vl~~I~~~~~~~----~  184 (249)
                      ++|.....++.+|+||||| .+|++|+|||||++.++++||++        |+|||||++|||||++|+++++++    +
T Consensus        73 ~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~  152 (167)
T 3s6m_A           73 ANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQ  152 (167)
T ss_dssp             CCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CB
T ss_pred             CCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccC
Confidence            8986543344799999999 57999999999999999999998        999999999999999999999987    6


Q ss_pred             CCcccceEEeeeeee
Q psy10359        185 DRPVQGVTIVDCGHT  199 (249)
Q Consensus       185 ~~P~~~i~I~~cg~l  199 (249)
                      ++|.++|+|.+|.++
T Consensus       153 ~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          153 DVPNDDVVIEKAVVV  167 (167)
T ss_dssp             TCBSSCCEEEEEEEC
T ss_pred             CCcCCCeEEEEEEEC
Confidence            899999999999875

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=1.7e-38  Score=286.21  Aligned_cols=156  Identities=25%  Similarity=0.440  Sum_probs=131.6

Q ss_pred             hhcCCCCcccEEEEEEEEC-----ceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCC
Q psy10359         29 KVAKGPKVTDIVWFQIQIG-----EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTK  103 (249)
Q Consensus        29 ~~~~~~~~t~~v~~di~i~-----~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~  103 (249)
                      .....|.++.++++++.+.     .++.|+|+|+||++.||+||+||++||+.  |+ |+|+.|||+ ++||+||||+. 
T Consensus       160 ~y~~~P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~--Gf-YdGt~FHRV-~gFmIQgGDp~-  234 (369)
T 3rfy_A          160 EYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVER--HF-YDGMEIQRS-DGFVVQTGDPE-  234 (369)
T ss_dssp             SCTTSCEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHT--TT-TTTEECEEE-EEEEECCCCCC-
T ss_pred             hcccCccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhc--CC-cCCCeeeee-CCeeEecCCCC-
Confidence            3456677788888777754     23599999999999999999999999999  67 999999999 99999999997 


Q ss_pred             CCCCC---------------------CCccCCCCCCCCcc-----cCCCCcceEEEEecC--CCCCCCceEEEEc-----
Q psy10359        104 GDGTG---------------------GASIYGDKFEDENF-----KLSHYGSGWLSMANA--GKDTNGSQFFITT-----  150 (249)
Q Consensus       104 ~~~~~---------------------~~~~~~~~~~~e~~-----~~~h~~~G~vsm~~~--~~~~~~SqFfItl-----  150 (249)
                      +++.|                     +.++|+..+++|++     .++|+.+|+|||||.  +||+|+|||||++     
T Consensus       235 g~G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFFItl~d~~L  314 (369)
T 3rfy_A          235 GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESEL  314 (369)
T ss_dssp             CCCSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCCCCCEEEEE
T ss_pred             CCCCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEEEEeccccc
Confidence            44444                     35677788888754     688899999999998  8999999999999     


Q ss_pred             --CCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        151 --KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       151 --~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                        .+.+|||++|+|||+|++|||||++|++.      -....|+|.+
T Consensus       315 ~~~~~~~LDgkytVFG~VveGmdVVdkI~~G------D~I~sv~I~~  355 (369)
T 3rfy_A          315 TPSNSNILDGRYAVFGYVTDNEDFLADLKVG------DVIESIQVVS  355 (369)
T ss_dssp             CSCCCSSSCSCEEEEEEEEESTTGGGGCCTT------CEEEEEEEEE
T ss_pred             CCCCCcccCCCeeEEEEEecCHHHHHHHhCC------CceEEEEEec
Confidence              46899999999999999999999999873      2356666665

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=97.59  E-value=2.2e-05  Score=64.37  Aligned_cols=41  Identities=51%  Similarity=1.010  Sum_probs=38.5

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeeecC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKD  246 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~~~  246 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|+.++||.|++|
T Consensus       145 ~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~~~Pf~~~~~  185 (185)
T 4fru_A          145 MEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFAIAKE  185 (185)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEEEEECC
T ss_pred             HHHHHHHHhCCCCCCCcCCCCEEEEEceEEecCCCCcccCC
Confidence            56899999999998899999999999999999999999986

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=96.78  E-value=0.00043  Score=56.78  Aligned_cols=41  Identities=49%  Similarity=0.940  Sum_probs=37.6

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeeecC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKD  246 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~~~  246 (249)
                      .+++++|++.+++..++|.++|+|.+||+++.++||...|+
T Consensus       148 ~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l~~~~Pf~~~~~  188 (188)
T 3ich_A          148 MEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAKE  188 (188)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHhCCcCCCCeECCCEEEEEeEEEecCCCCCCCCC
Confidence            57899999999998899999999999999999999998764

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=94.97  E-value=0.01  Score=48.02  Aligned_cols=30  Identities=37%  Similarity=0.712  Sum_probs=27.8

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|
T Consensus       150 ~dvv~~I~~~~t~~~~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          150 QEVVREIENQKTDAASKPFAEVRILSCGEL  179 (179)
T ss_dssp             HHHHHHHHTCCBCTTSCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCeEEEeCeeC
Confidence            578999999999988999999999999986

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=94.64  E-value=0.013  Score=47.27  Aligned_cols=30  Identities=40%  Similarity=0.748  Sum_probs=27.9

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|
T Consensus       147 ~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l  176 (177)
T 1a58_A          147 QEVVTKIEYLKTNSKNRPLADVVILNCGEL  176 (177)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCCCCcCCCCeEEEEeEEE
Confidence            578999999999988999999999999987

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=94.55  E-value=0.016  Score=47.47  Aligned_cols=32  Identities=34%  Similarity=0.683  Sum_probs=28.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPV  237 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~  237 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|..
T Consensus       160 mdvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~  191 (192)
T 2he9_A          160 FEVIEQIENLKTDAASRPYADVRVIDCGVLAT  191 (192)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEEEEECC-
T ss_pred             HHHHHHHHcCCcCCCCCCcCCeEEEEeEEEcc
Confidence            56899999999998899999999999999863

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=94.47  E-value=0.012  Score=47.66  Aligned_cols=30  Identities=33%  Similarity=0.477  Sum_probs=27.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|
T Consensus       148 ~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          148 LLVMRKIENVPTGPNNKPKLPVVISQCGEM  177 (177)
T ss_dssp             HHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence            578999999999888999999999999986

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=94.26  E-value=0.014  Score=47.00  Aligned_cols=30  Identities=47%  Similarity=0.671  Sum_probs=27.6

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++..++|.++|+|.+||+|
T Consensus       143 ~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          143 MDVVLRIEKTKTNSHDRPVKPVKIVASGEL  172 (172)
T ss_dssp             HHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence            568999999999888899999999999986

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=94.25  E-value=0.019  Score=46.16  Aligned_cols=30  Identities=33%  Similarity=0.461  Sum_probs=26.7

Q ss_pred             hhhhhhhccccCCCCC-CCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRD-RPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d-~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++..+ +|.++|+|.+||+|
T Consensus       142 ~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          142 YSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             HHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence            4789999999988766 99999999999986

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=93.77  E-value=0.029  Score=45.00  Aligned_cols=29  Identities=28%  Similarity=0.453  Sum_probs=26.1

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.++ .+++|.++|+|.+||+|
T Consensus       142 ~dvv~~I~~~~t-~~~~P~~~v~I~~cG~l  170 (170)
T 1qng_A          142 MNVVREMEKEGA-KSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             HHHHHHHHTTCC-TTCCCSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCC-CCCCCCCCeEEEeceeC
Confidence            578999999998 56899999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=93.75  E-value=0.025  Score=47.59  Aligned_cols=30  Identities=27%  Similarity=0.417  Sum_probs=26.9

Q ss_pred             hhhhhhhccccCCCC-CCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGR-DRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~-d~P~~~v~i~~~g~l  235 (249)
                      .++|++|++.+++.+ ++|.++|+|.+||+|
T Consensus       199 mdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          199 LLLLKKIENVSVTPYIYKPKIPINVVECGEL  229 (229)
T ss_dssp             HHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence            467899999999877 899999999999986

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=93.61  E-value=0.081  Score=41.67  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=60.1

Q ss_pred             EEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcC--CCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCC
Q psy10359         42 FQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKR--PEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFED  119 (249)
Q Consensus        42 ~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~--~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~  119 (249)
                      +.|.+++   ..++++|+.+.||+||+.|+++.=-  .-.. |.+-.++ ..|..                    ...+ 
T Consensus        32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LPl~~~~~~-~g~E~y~-~lp~~--------------------l~~~-   85 (153)
T 2nnz_A           32 LRIRFES---AECEVELYEEWAPETVRAIADALPIKSTANR-WGDEIYF-TTQVA--------------------VEKE-   85 (153)
T ss_dssp             EEEEETT---EEEEECCCTTSCHHHHHHHHHTCSEEEEEEE-ETTEEEE-CCSCC--------------------CCCS-
T ss_pred             EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCCcEEEHHh-hCCcEEE-ECCCC--------------------CCCC-
Confidence            4455565   6699999999999999999997511  0000 2211111 11110                    0011 


Q ss_pred             CcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCC------CceEEEEEEccHHHHHHH
Q psy10359        120 ENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG------RHVVFGKVITGGDIVKKI  176 (249)
Q Consensus       120 e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~------~~~vFG~Vi~G~~vl~~I  176 (249)
                      |+. .....+|-|+....+.     .+.|-.++.|...+      .-.+||||++|++.|.++
T Consensus        86 en~-~~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~  142 (153)
T 2nnz_A           86 ENS-KDVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGV  142 (153)
T ss_dssp             SCC-BCCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGC
T ss_pred             CCC-cccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhC
Confidence            221 1233579998876543     37787887753222      358899999997766554

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=92.70  E-value=0.053  Score=43.13  Aligned_cols=29  Identities=28%  Similarity=0.574  Sum_probs=26.0

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++ .++|.++|+|.+||+|
T Consensus       135 ~~vv~~I~~~~~~-~~~P~~~v~I~~cg~l  163 (164)
T 3pmp_A          135 LDIVRKVEGKGSA-SGKTNATIKITDCGTV  163 (164)
T ss_dssp             HHHHHHHHTTCCT-TCCCSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCCC-CCCcccCEEEEeCeEE
Confidence            5689999998886 5899999999999987

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=92.40  E-value=1.4  Score=35.39  Aligned_cols=115  Identities=16%  Similarity=0.218  Sum_probs=63.3

Q ss_pred             EEEEEECceeee-eEEEEEeCCCCcchHHHHHHhhcCC----CCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCC
Q psy10359         41 WFQIQIGEVNVG-KIEIGLFGKTVPRTVQNFIELAKRP----EGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGD  115 (249)
Q Consensus        41 ~~di~i~~t~~G-~i~ieL~~~~aP~t~~nF~~l~~~~----~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~  115 (249)
                      |+.|++.  ..| .++.+|..+.||+||+.|+++.=-.    +.. |.|..++-.+|.|-.                  .
T Consensus        23 ~i~itl~--~~g~~~~A~Lldd~APkTcaA~~~~LP~~~~viHar-wSGeeVy~~lp~f~~------------------~   81 (188)
T 3kop_A           23 YINITLE--KRGVTCKALLLDDVAPRTSKAVWDALPQSSQVFHGK-YARNEIYNLVPAFAP------------------K   81 (188)
T ss_dssp             EEEEEET--TTTEEEEEEECTTTSHHHHHHHHHHCCEEEECEECS-SSSSEEEEEEECCSS------------------S
T ss_pred             EEEEEEe--cCCeEEEEEEccccChHHHHHHHHhCCCCcceEEEE-EecceEEEECCcccc------------------c
Confidence            4555543  344 3788999999999999999975110    011 555555544444311                  1


Q ss_pred             CCCCCcccCCCCcceEEEEecC-----C-------C------CCCCceEEEEcCCCCC-CCCC-----ceEEEEEEccHH
Q psy10359        116 KFEDENFKLSHYGSGWLSMANA-----G-------K------DTNGSQFFITTKKTPW-LDGR-----HVVFGKVITGGD  171 (249)
Q Consensus       116 ~~~~e~~~~~h~~~G~vsm~~~-----~-------~------~~~~SqFfItl~~~~~-ld~~-----~~vFG~Vi~G~~  171 (249)
                      ..+.||..... .+|-|++-..     |       +      .....++.|-.+.+.. +.++     -.+|++|++|+|
T Consensus        82 ~~g~EN~T~~P-~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~TIveGle  160 (188)
T 3kop_A           82 EPGAENTTVTP-IPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFATIVEGLD  160 (188)
T ss_dssp             CCCSCSEESSC-CTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEEEEESHH
T ss_pred             CCCcCCCCCCC-CCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEEEecCHH
Confidence            13334433322 3677776310     1       0      1112456666665442 2222     378999999998


Q ss_pred             HHHHHH
Q psy10359        172 IVKKIE  177 (249)
Q Consensus       172 vl~~I~  177 (249)
                      -+.++-
T Consensus       161 ~la~~c  166 (188)
T 3kop_A          161 EMAAAC  166 (188)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            775443

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=91.92  E-value=0.073  Score=43.18  Aligned_cols=29  Identities=24%  Similarity=0.503  Sum_probs=25.5

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+|+++|++..++ +++|.++|+|.+||+|
T Consensus       155 ~dvv~~I~~~~~~-~g~P~~~v~I~~cG~l  183 (184)
T 3rdd_A          155 MNIVEAMERFGSR-NGKTSKKITIADCGQL  183 (184)
T ss_dssp             HHHHHHHHTTCCT-TSCCSSCEEEEEEEEC
T ss_pred             HHHHHHHHhcCCC-CCCCcCCeEEEeCeEE
Confidence            5689999988874 5899999999999997

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=91.83  E-value=0.085  Score=42.32  Aligned_cols=29  Identities=34%  Similarity=0.494  Sum_probs=25.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++ +++|.++|+|.+||+|
T Consensus       143 ~dvv~~I~~~~~~-~~~P~~~v~I~~~g~l  171 (172)
T 2cmt_A          143 QNVVKKMESVGSK-SGKVKEPVIISRCGEL  171 (172)
T ss_dssp             HHHHHHGGGGCCT-TCCCSSCEEEEEEEEE
T ss_pred             HHHHHHHHhCCCC-CCCCCCCEEEEEeEeE
Confidence            5789999998885 5899999999999997

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=91.76  E-value=0.083  Score=43.20  Aligned_cols=30  Identities=30%  Similarity=0.429  Sum_probs=26.6

Q ss_pred             hhhhhhhccccCCCCCCCc--cceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPV--QGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~--~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++ .++|.  ++|+|.+||+|.
T Consensus       160 mdvv~~I~~~~t~-~g~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          160 MDVVHKIAKYGSE-SGQVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             HHHHHHHHTTCCT-TCCCCTTCCEEEEEEEECC
T ss_pred             HHHHHHHHhcCCC-CCcCccCccEEEEEceEeC
Confidence            5689999998887 57999  999999999986

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=91.74  E-value=0.081  Score=42.47  Aligned_cols=29  Identities=38%  Similarity=0.658  Sum_probs=25.6

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++..++ .++|.++|+|.+||+|
T Consensus       144 ~dvv~~I~~~~~~-~~~P~~~v~I~~cG~l  172 (173)
T 2r99_A          144 LDVLRQIEAQGSK-DGKPKQKVIIADCGEY  172 (173)
T ss_dssp             HHHHHHHHTTCCT-TCCCSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCCC-CCCCCCCeEEEEeeeE
Confidence            5689999988875 4899999999999997

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=91.62  E-value=0.081  Score=42.45  Aligned_cols=30  Identities=40%  Similarity=0.684  Sum_probs=26.2

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++ +++|.++|+|.+||+|.
T Consensus       143 ~dvv~~I~~~~t~-~~~P~~~v~I~~~g~l~  172 (173)
T 2igv_A          143 LDVVKAVESNGSQ-SGKPVKDCMIADCGQLK  172 (173)
T ss_dssp             HHHHHHHHTTCCT-TSCCSSCEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCC-CCCCCCCEEEEEeEEEc
Confidence            5789999988884 58999999999999984

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=91.20  E-value=0.09  Score=41.83  Aligned_cols=30  Identities=43%  Similarity=0.606  Sum_probs=25.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.++ .+++|.++|+|.+||+|.
T Consensus       136 ~dvv~~I~~~~~-~~~~P~~~v~I~~~g~l~  165 (165)
T 2z6w_A          136 MDVVKKIESFGS-KSGRTSKKIVITDCGQLS  165 (165)
T ss_dssp             HHHHHHHHHTCC-TTSCCSSCEEEEEEEECC
T ss_pred             HHHHHHHHhCCC-CCCCCCCcEEEEEeEEEC
Confidence            468999998875 568999999999999983

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=91.03  E-value=0.096  Score=42.56  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGY  234 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~  234 (249)
                      .++|++|++.++ .+++|.++|+|.+||+
T Consensus       159 mdvv~~I~~~~t-~~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          159 MEVVKSIEKCGS-QNGKPTKSVCITASGV  186 (186)
T ss_dssp             HHHHHHHHHTCC-TTSCCSSCEEEEEEEC
T ss_pred             HHHHHHHHhCCC-CCCCCCCCEEEEeCCC
Confidence            578999999888 4589999999999996

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=90.75  E-value=0.094  Score=42.57  Aligned_cols=35  Identities=17%  Similarity=0.414  Sum_probs=29.2

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCcee
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFS  242 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~  242 (249)
                      .++|++|++.+++.+++|.++|+|.+|+.+.  .||.
T Consensus       145 mdvv~~I~~~~t~~~~~P~~~v~I~~~~i~~--dPf~  179 (185)
T 2poe_A          145 FETLNTLENCPSDKSHKPIDEIIIKDIVIHS--NPIA  179 (185)
T ss_dssp             HHHHHHHHHSCBCTTSCBSSCCEEEEEEEEC--CC--
T ss_pred             HHHHHHHHhCCcCCCCCcCCCeEEEEEEEEC--CCCC
Confidence            5689999999998889999999999999983  4554

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=89.62  E-value=0.14  Score=43.19  Aligned_cols=32  Identities=28%  Similarity=0.238  Sum_probs=29.2

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPV  237 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~  237 (249)
                      .+||++|++.+++.+++|.++|+|.+||++..
T Consensus       177 mdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~~  208 (234)
T 2ose_A          177 LDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD  208 (234)
T ss_dssp             HHHHHHHHHHTCCCTTCCCCCEEEEEEEECCC
T ss_pred             HHHHHHHHhCCcCCCCCccCCEEEEEEEEecC
Confidence            57899999999998899999999999999954

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=88.78  E-value=0.18  Score=41.14  Aligned_cols=30  Identities=37%  Similarity=0.537  Sum_probs=26.8

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .++|++|++.+++.+++|.++|+|.+|+.+
T Consensus       162 mdvv~~I~~~~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          162 QRVVEAISKTATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             HHHHHHHHcCCcCCCCCcCCCeEEEEEEEC
Confidence            468899999999888999999999999863

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=88.24  E-value=0.17  Score=41.50  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=28.4

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.+++|.++|+|.+|+.+.
T Consensus       143 mdvv~~I~~~~t~~~~~P~~~i~I~~~~v~~  173 (201)
T 3bo7_A          143 LDVLRQWEKLETDKKDKPLKPPKVEEIIVFK  173 (201)
T ss_dssp             HHHHHHHTTCCBCTTSCBSSCCBEEEEEEEE
T ss_pred             HHHHHHHHhCCcCCCCCcCCCeEEEEEEEEc
Confidence            5789999999999889999999999999983

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=85.83  E-value=0.29  Score=38.65  Aligned_cols=34  Identities=24%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             hhhhhhhccccCCCC-CCCccceEEeecCccCCcCce
Q psy10359        206 SDVVKKIESSETDGR-DRPVQGVTIVDCGYTPVEEPF  241 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~-d~P~~~v~i~~~g~l~~~~~~  241 (249)
                      .+++++|++.+++.+ ++|.++|+|.+|+.+.  .||
T Consensus       125 ~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~--~Pf  159 (161)
T 2ok3_A          125 LETLDELEKLPVNEKTYRPLNDVHIKDITIHA--NPF  159 (161)
T ss_dssp             HHHHHHHHTCCBCTTTCCBSSCCBEEEEEEEC--CSC
T ss_pred             HHHHHHHHhCCccCCCCCcCCCeEEEEEEEec--CCC
Confidence            468999999999877 8999999999999873  455

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=84.51  E-value=0.38  Score=38.93  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=23.9

Q ss_pred             hhhhccccCCCCCCCccceEEeecCcc
Q psy10359        209 VKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       209 v~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      +.+|++.+++.+++|.++|+|.+|+.+
T Consensus       153 ~~~i~~~~~~~~~~P~~~v~I~~~~v~  179 (185)
T 2hq6_A          153 MLRLSEVDIDDDERPHNPHKIKSCEVL  179 (185)
T ss_dssp             HHHTTCSCBCTTSCBSSCCEEEEEEEE
T ss_pred             hhHHhhCCcCCCCCCCCCeEEEEEEEe
Confidence            356888888888999999999999998

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=84.30  E-value=0.47  Score=37.65  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=26.9

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+|..+
T Consensus       136 ~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~  165 (166)
T 2x7k_A          136 IGMVNRVGMVETNSQDRPVDDVKIIKAYPS  165 (166)
T ss_dssp             HHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             HHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence            568999999999888999999999999764

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=83.46  E-value=0.52  Score=38.47  Aligned_cols=31  Identities=16%  Similarity=0.332  Sum_probs=27.0

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.+++|.++|+|.+|+.+.
T Consensus       163 mdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~  193 (196)
T 2b71_A          163 MTCIENIASVQTTATNKPIFDLKILRTSTAV  193 (196)
T ss_dssp             HHHHHHHHTSCBCTTCCBSSCCEEEEEEC--
T ss_pred             HHHHHHHHhCCcCCCCCCCCCeEEEEEEEec
Confidence            5689999999998889999999999999873

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=83.17  E-value=0.43  Score=39.03  Aligned_cols=31  Identities=29%  Similarity=0.398  Sum_probs=27.8

Q ss_pred             hhhhhhhccccCCCC-CCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGR-DRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~-d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.+ ++|.++|+|.+|+.+.
T Consensus       144 mdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~  175 (197)
T 1zkc_A          144 FDVLTAMENVESDPKTDRPKEEIRIDATTVFV  175 (197)
T ss_dssp             HHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEE
T ss_pred             HHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEc
Confidence            468999999999877 8999999999999984

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=83.16  E-value=0.25  Score=40.66  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=29.2

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVE  238 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~  238 (249)
                      .+++++|++.+++.+++|.++|+|.+|+.+...
T Consensus       136 mdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~  168 (203)
T 2k7n_A          136 IGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGG  168 (203)
T ss_dssp             HHHHHHHHSCCEEETTEECCCCBEEEEEECCCC
T ss_pred             HHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecC
Confidence            568999999999888999999999999998543

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=81.32  E-value=0.65  Score=36.76  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=25.9

Q ss_pred             hhhhhhhccccCCC----CCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDG----RDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~----~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.    .++|.++|+|.+|..|
T Consensus       134 ~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          134 QDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             HHHHHHHTTSCBBC---CBTCBSSCCEEEEEEEC
T ss_pred             HHHHHHHHcCCcCCCcccCCCcCCCeEEEEEEEC
Confidence            46899999999886    6899999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	249
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	1e-55
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	1e-54
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	7e-53
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-49
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	2e-49
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-47
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	7e-47
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	3e-46
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	5e-46
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-45
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	2e-44
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	2e-43
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	2e-42
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	3e-41
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	6e-39
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	2e-36
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-33
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-32
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	4e-31
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	2e-30
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	7e-25
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-24

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  174 bits (441), Expect = 1e-55
 Identities = 125/181 (69%), Positives = 146/181 (80%)

Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           KGPKVTD V+F ++IG   +G+I IGLFGKTVP+T  NFIELAK+P+G+GY GSKFHRVI
Sbjct: 1   KGPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVI 60

Query: 92  KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
            DFMIQGGD+T+GDGTGG SIYG+KF DENFKL HYG+GWLSMANAG DTNGSQFFITT 
Sbjct: 61  ADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTV 120

Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVVKK 211
           KTPWLDGRHVVFGK++ G D+V+KIE +E    DRP Q V I   GH  V+ PFS   + 
Sbjct: 121 KTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVEREA 180

Query: 212 I 212
           +
Sbjct: 181 V 181

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  171 bits (434), Expect = 1e-54
 Identities = 113/178 (63%), Positives = 133/178 (74%)

Query: 32  KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVI 91
           +GP VTD V+F ++IG+ +VG+I IGLFG  VP+TV+NF+ LA   +G GYKGS FHRVI
Sbjct: 2   RGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVI 61

Query: 92  KDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTK 151
           KDFMIQGGD+T  DGTGG SIYG+ F DENFKL HYG GW+SMANAG DTNGSQFFIT  
Sbjct: 62  KDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLT 121

Query: 152 KTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSDVV 209
           K  WLDG+HVVFGKV+ G  +V  IE   TDG DRP+   TIV+ G   V+ PF   V
Sbjct: 122 KPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVVEV 179

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  166 bits (422), Expect = 7e-53
 Identities = 89/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGG 99
           V+F I      +G I+  LF   VP+T  NF  L    +G GY GS FHRVI DFM+QGG
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGG 63

Query: 100 DYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGR 159
           D+T G+GTGG SIYG KF DENF+L H   G LSMANAG +TNGSQFFITT  T WLDG+
Sbjct: 64  DFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGK 123

Query: 160 HVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           HVVFG+VI G ++VK IE +E  G  +P   + I  CG
Sbjct: 124 HVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCG 160

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  158 bits (401), Expect = 1e-49
 Identities = 84/171 (49%), Positives = 108/171 (63%), Gaps = 8/171 (4%)

Query: 35  KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG--------YKGSK 86
           K    V+  + I     G+I + L+    PRT  NF+ L     G G        YKGS 
Sbjct: 1   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60

Query: 87  FHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQF 146
           FHRVIK+FMIQGGD+TKGDGTGG SIYG  F+DE F + H     +SMAN G +TNGSQF
Sbjct: 61  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120

Query: 147 FITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           FITT   P L+  HVVFGKV++G ++V KIE  +T+ ++RP+  V I++CG
Sbjct: 121 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCG 171

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  157 bits (398), Expect = 2e-49
 Identities = 100/164 (60%), Positives = 125/164 (76%), Gaps = 1/164 (0%)

Query: 34  PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKD 93
           P VTD V+F I IG+  VG++ IGLFG  VP+TV+NF +LA    G GYKGS FHRVI++
Sbjct: 2   PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRN 61

Query: 94  FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQGGD+T  DGTGG SIYG +F+DEN K   +  G +SMANAG ++NGSQFF+TT  T
Sbjct: 62  FMIQGGDFTNFDGTGGKSIYGTRFDDENLK-IKHFVGAVSMANAGPNSNGSQFFVTTAPT 120

Query: 154 PWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           PWLDGRHVVFGKV+ G D+VKK+E+++T   D+P + V I DCG
Sbjct: 121 PWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  153 bits (386), Expect = 2e-47
 Identities = 90/165 (54%), Positives = 113/165 (68%), Gaps = 8/165 (4%)

Query: 40  VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-------YKGSKFHRVIK 92
           V+F I IG    G+I + L+   VP+T  NF  L     G G       +KGSKFHR+I 
Sbjct: 6   VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65

Query: 93  DFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK 152
           +FMIQGGD+T+G+GTGG SIYG+KF DENFK  H G G LSMANAG +TNGSQFF+ T K
Sbjct: 66  NFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVK 125

Query: 153 TPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           T WLDG+HVVFG+V+ G D+VK +ES+ +    +PV+   I DCG
Sbjct: 126 TEWLDGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMIADCG 169

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  151 bits (383), Expect = 7e-47
 Identities = 90/163 (55%), Positives = 111/163 (68%), Gaps = 3/163 (1%)

Query: 38  DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQ 97
           D+ +  +   E  VG+I   LF K VP+T +NF EL KRP G+GY+ S FHR+I +FMIQ
Sbjct: 7   DVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ 66

Query: 98  GGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLD 157
           GGD+T+G+GTGG SIYGDKF DENF   H   G LSMANAG +TNGSQFFITT  T WLD
Sbjct: 67  GGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLD 126

Query: 158 GRHVVFGKVI--TGGDIVKKIESSETD-GRDRPVQGVTIVDCG 197
           G+HVVFG+V       +VK+IE+  +  G  R      IV+CG
Sbjct: 127 GKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCG 169

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  150 bits (380), Expect = 3e-46
 Identities = 85/177 (48%), Positives = 110/177 (62%), Gaps = 9/177 (5%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG--------QGYKGSKFHRV 90
            V+F + IG   VG+I + LF   VP+T +NF  L    +G          +KG  FHR+
Sbjct: 16  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75

Query: 91  IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
           IK FMIQGGD++  +GTGG SIYG+KFEDENF   H   G LSMANAG +TNGSQFFITT
Sbjct: 76  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGHTPVEEPFSD 207
             TP LDG+HVVFG+VI G  + K +E+ E  G ++P +   I +CG     + +  
Sbjct: 136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKG-EKPAKLCVIAECGELKEGDDWGI 191

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  149 bits (376), Expect = 5e-46
 Identities = 85/159 (53%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQG 98
           +V+  +      +G++ + L    VP+T +NF  L    +G GYKGS FHRVI  FM Q 
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQA 63

Query: 99  GDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
           GD+T  +GTGG SIYG +F DENF L H G G LSMANAG +TNGSQFFI T KT WLDG
Sbjct: 64  GDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDG 123

Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           +HVVFG VI G D+VKKIES  +    R  + + I DCG
Sbjct: 124 KHVVFGHVIEGMDVVKKIESFGSKS-GRTSKKIVITDCG 161

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  148 bits (373), Expect = 2e-45
 Identities = 83/173 (47%), Positives = 100/173 (57%), Gaps = 11/173 (6%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA------KRPEGQGYKG 84
           +K  KV    +F I I   N G+I   LF    PRT +NF  L        R +   YK 
Sbjct: 1   SKRSKV----FFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKN 56

Query: 85  SKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGS 144
           S FHR+I  FM QGGD T G+G+GG SIYG  F DENF + H   G LSMANAG +TN S
Sbjct: 57  SIFHRIIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSS 116

Query: 145 QFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           QFFIT    PWLDG+HVVFGKVI G ++V+++E           + V I DCG
Sbjct: 117 QFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKS-GYVKRSVVITDCG 168

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (367), Expect = 2e-44
 Identities = 69/171 (40%), Positives = 100/171 (58%), Gaps = 8/171 (4%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             N G + + L     P+T +NFI L K      Y G+ FHR I++F+IQGGD T G GT
Sbjct: 6   HTNKGDLNLELHCDLTPKTCENFIRLCK---KHYYDGTIFHRSIRNFVIQGGDPT-GTGT 61

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GG S +G  F+DE    LSH G G LSMAN+G ++N SQFFIT +   +LD +H +FG+V
Sbjct: 62  GGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRV 121

Query: 167 ITGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPFSDVVKKIESSE 216
           + G D++  +E+ E+D + DRP + + I     T   +P+ +   +I    
Sbjct: 122 VGGFDVLTAMENVESDPKTDRPKEEIRIDAT--TVFVDPYEEADAQIAQER 170

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  142 bits (359), Expect = 2e-43
 Identities = 89/168 (52%), Positives = 108/168 (64%), Gaps = 5/168 (2%)

Query: 35  KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELA-----KRPEGQGYKGSKFHR 89
            V  +V+F + IG   VG+++I LF   VP+T +NF +       K     GYKGS FHR
Sbjct: 4   PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHR 63

Query: 90  VIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFIT 149
           VIKDFMIQGGD+  GDGTG ASIY   F DENFKL H   G LSMAN+G  TNG QFFIT
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFIT 123

Query: 150 TKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
             K  WLDG+HVVFGK+I G  +++KIE+  T   ++P   V I  CG
Sbjct: 124 CSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCG 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (352), Expect = 2e-42
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQG 98
            V+  I+IG    G+I++ L    VP T +NF  L    +G G+KGS FHR+I  FM QG
Sbjct: 3   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 62

Query: 99  GDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDG 158
           GD+T  +GTGG SIYG KF+DENF L H G G LSMAN+G +TNGSQFF+T  KT WLDG
Sbjct: 63  GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDG 122

Query: 159 RHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
           +HVVFG+V  G D++++IE ++     +P Q V I DCG
Sbjct: 123 KHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCG 160

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 3e-41
 Identities = 80/148 (54%), Positives = 103/148 (69%), Gaps = 5/148 (3%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
           E ++G I + L+ K  P+T +NF ELA+R     Y G+KFHR+IKDFMIQGGD T G G 
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNFAELARRGY---YNGTKFHRIIKDFMIQGGDPT-GTGR 72

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GGASIYG +FEDE +  L   G+G L+MANAG DTNGSQFF+T   T WLDG+H +FG+V
Sbjct: 73  GGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRV 132

Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIV 194
             G  +V ++   ET+ +DRPV  V I+
Sbjct: 133 CQGIGMVNRVGMVETNSQDRPVDDVKII 160

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  131 bits (331), Expect = 6e-39
 Identities = 75/167 (44%), Positives = 104/167 (62%), Gaps = 8/167 (4%)

Query: 39  IVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQG-----YKGSKFHRVIKD 93
           +V+  I +G   +GK +  LF   VP+T +NF +              YK + FHRVIK+
Sbjct: 18  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKE 77

Query: 94  FMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKT 153
           FMIQGGD+   +G+G  SIYG+KF+DENF + H   G LSMAN+G +TNG QFFITTKK 
Sbjct: 78  FMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKC 137

Query: 154 PWLDGRHVVFGKVITGG--DIVKKIESSETDGR-DRPVQGVTIVDCG 197
            WLDG++VVFG++I      ++KKIE+        +P   + +V+CG
Sbjct: 138 EWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECG 184

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 2e-36
 Identities = 60/159 (37%), Positives = 83/159 (52%), Gaps = 6/159 (3%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             +VG I+I +F +  P+T +NF+ L       G     FHR IK FM+Q GD T     
Sbjct: 6   HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI---FHRNIKGFMVQTGDPTGTGRG 62

Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI 167
           G +       ++ +  L H   G +SMAN G +TNGSQFFIT  K P LD ++ VFGKVI
Sbjct: 63  GNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVI 122

Query: 168 TGGDIVKKIESSETDGR-DRPVQGVTIVDCGHTPVEEPF 205
            G + + ++E    + +  RP+  V I D   T    PF
Sbjct: 123 DGLETLDELEKLPVNEKTYRPLNDVHIKDI--TIHANPF 159

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  115 bits (289), Expect = 6e-33
 Identities = 71/163 (43%), Positives = 88/163 (53%), Gaps = 17/163 (10%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAK------------RPEGQGYKGSKFHRVIKDFM 95
             N G I+I LFG   P+TV NF+ LA+             P G  Y G+ FHRVI+ FM
Sbjct: 9   HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 68

Query: 96  IQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPW 155
           IQGGD T G G GG        ++ + +L       L+MANAG  TNGSQFFIT  KTP 
Sbjct: 69  IQGGDPT-GTGRGG--PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125

Query: 156 LDGRHVVFGKVI--TGGDIVKKIESSETDGRDRPVQGVTIVDC 196
           L+ RH +FG+VI      +V+ I  + TDG DRP   V I   
Sbjct: 126 LNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESI 168

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 3e-32
 Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 8/167 (4%)

Query: 31  AKGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRV 90
           A+GPK          I   ++G I   LF    P+TV+NF   ++      Y G  FHR+
Sbjct: 2   AEGPKRV----SDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSR---NGYYNGHTFHRI 54

Query: 91  IKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITT 150
           IK FMIQ GD T     G +   G+  ++ +  L H     LSMANAG +TNGSQFFIT 
Sbjct: 55  IKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITV 114

Query: 151 KKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR-DRPVQGVTIVDC 196
             TPWLD +H VFG+V  G ++V++I + + + + D+P + V+I++ 
Sbjct: 115 VPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINI 161

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  111 bits (277), Expect = 4e-31
 Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 5/151 (3%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             N+G  E+ L+    P+T  NF  L +     G+  +     +    +  G    G G 
Sbjct: 22  YTNLGDFEVELYWYHSPKTCLNFYTLCEM----GFYDNTIFHRVIPNFVIQGGDPTGTGK 77

Query: 108 GGASIYGDKFEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GG SIYG+ FEDE N +L H G+G LSM+N G +TN SQFFIT    P LDG+H +F +V
Sbjct: 78  GGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARV 137

Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVDCG 197
                 ++ I S +T   ++P+  + I+   
Sbjct: 138 SKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  108 bits (271), Expect = 2e-30
 Identities = 63/150 (42%), Positives = 84/150 (56%), Gaps = 5/150 (3%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
              +G I I LF K   +TVQNF   +      GY  +     +    +       GDGT
Sbjct: 7   YTTMGDIHISLFYKECKKTVQNFSVHSI----NGYYNNCIFHRVIKHFMVQTGDPSGDGT 62

Query: 108 GGASIYGDKFEDENFKLSHYGSGW-LSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKV 166
           GG SI+G++FEDE F   ++   + +SMAN G +TNGSQFFITT   PWLD +H VFGKV
Sbjct: 63  GGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKV 122

Query: 167 ITGGDIVKKIESSETDGRDRPVQGVTIVDC 196
             G  IV  IE   TD RD+P++ + I++ 
Sbjct: 123 TQGSKIVLDIEKVRTDKRDKPLEDIKILNI 152

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 94.6 bits (234), Expect = 7e-25
 Identities = 42/161 (26%), Positives = 59/161 (36%), Gaps = 17/161 (10%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             N G I I  F    P TV+NF++  +      Y  + FHRVI  FMIQGG +  G   
Sbjct: 5   HTNHGDIVIKTFDDKAPETVKNFLDYCREGF---YNNTIFHRVINGFMIQGGGFEPGMKQ 61

Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKK--------TPWLDGR 159
              +       + N  L +              +  +QFFI                   
Sbjct: 62  K--ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWG 119

Query: 160 HVVFGKVITGGDIVKKIESSETD----GRDRPVQGVTIVDC 196
           + VF +V+ G D V KI+   T      +D P + V I   
Sbjct: 120 YCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESV 160

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 92.7 bits (229), Expect = 4e-24
 Identities = 50/163 (30%), Positives = 73/163 (44%), Gaps = 16/163 (9%)

Query: 48  EVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGT 107
             + G IE+ L  +  P +VQNF++         Y  + FHRVI  FMIQGG +T+    
Sbjct: 10  TTSAGNIELELDKQKAPVSVQNFVDY---VNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQ 66

Query: 108 GGASIYGDKFEDENFKLSHYGSGWLSMA-NAGKDTNGSQFFITTKKTPWLD-----GRHV 161
              +      ++E         G ++MA  A KD+  SQFFI      +LD       + 
Sbjct: 67  KKPNPP---IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYA 123

Query: 162 VFGKVITGGDIVKKIESSETDG----RDRPVQGVTIVDCGHTP 200
           VFGKV+ G D+  KI    T      ++ P + V I+     P
Sbjct: 124 VFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	249
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	97.28
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	97.15
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	96.4
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	96.08
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	95.6
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	95.21
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	94.57
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	94.14
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	94.12
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	93.93
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	92.6
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	92.29
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	88.74
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	86.34
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	83.08
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	82.94

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=8.4e-50  Score=329.31  Aligned_cols=175  Identities=64%  Similarity=1.126  Sum_probs=165.2

Q ss_pred             CCCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCc
Q psy10359         32 KGPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS  111 (249)
Q Consensus        32 ~~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~  111 (249)
                      ..|++|++|||||+++++++|+|+||||.+.||++|+||++||+++++.+|+++.|||+++++++|+|+....++.++.+
T Consensus         2 ~~p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~   81 (182)
T d2rmca_           2 RGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMS   81 (182)
T ss_dssp             CSCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCSSTTCBEEEEETTTEEEECCCSSSSSSCCCB
T ss_pred             CCCccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCCccccCceeeeeecCceEEcCCCCCCCCCCCCC
Confidence            56899999999999999999999999999999999999999998865445999999999999999999998778888888


Q ss_pred             cCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccce
Q psy10359        112 IYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGV  191 (249)
Q Consensus       112 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i  191 (249)
                      .++..++++.....|+.+|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++++++.+++|.++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v  161 (182)
T d2rmca_          82 IYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDC  161 (182)
T ss_dssp             TTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCE
T ss_pred             CcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCe
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeeeeeccCCCch
Q psy10359        192 TIVDCGHTPVEEPFS  206 (249)
Q Consensus       192 ~I~~cg~l~~~~p~~  206 (249)
                      +|.+||+|+.++||.
T Consensus       162 ~I~~~g~l~~~~P~~  176 (182)
T d2rmca_         162 TIVNSGKIDVKTPFV  176 (182)
T ss_dssp             EEEEEEEEEEEEEEE
T ss_pred             EEEEeeEEeCCCCcc
Confidence            999999998888884

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=3e-50  Score=331.96  Aligned_cols=175  Identities=71%  Similarity=1.212  Sum_probs=165.2

Q ss_pred             CCCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359         33 GPKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI  112 (249)
Q Consensus        33 ~~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~  112 (249)
                      .|++|++|||||+++++++|+|+||||.+.||+||+||++||++..+..|+++.|||++|++++|+|+...+++.++...
T Consensus         2 ~p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~~~~y~g~~f~rv~~~~~iq~G~~~~~~~~g~~~~   81 (182)
T d1h0pa_           2 GPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSI   81 (182)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECCTTTSSSSCCCBT
T ss_pred             cCCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcccCCcCCceEEEEEecceEEcCCCCCCCCCCCCCC
Confidence            58899999999999999999999999999999999999999987433339999999999999999999998888888899


Q ss_pred             CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceE
Q psy10359        113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVT  192 (249)
Q Consensus       113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~  192 (249)
                      ++..+.++.....|+.+|+++|++.++++++|||||+++++++||++|+|||||++|||+|++|++.+++++++|.++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~  161 (182)
T d1h0pa_          82 YGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVI  161 (182)
T ss_dssp             TBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEE
T ss_pred             CCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeeccCCCchh
Q psy10359        193 IVDCGHTPVEEPFSD  207 (249)
Q Consensus       193 I~~cg~l~~~~p~~~  207 (249)
                      |.+||+++.++||..
T Consensus       162 I~~cG~l~~~~p~~~  176 (182)
T d1h0pa_         162 IAASGHIAVDTPFSV  176 (182)
T ss_dssp             EEEEEEEEEEEEEEC
T ss_pred             EEECCeEeCCCCCcc
Confidence            999999998898863

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=1e-48  Score=318.28  Aligned_cols=165  Identities=61%  Similarity=1.028  Sum_probs=153.8

Q ss_pred             CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccC
Q psy10359         34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIY  113 (249)
Q Consensus        34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~  113 (249)
                      |++|++|||||+++++++|+|+||||.+.||++|+||++||+++++.+|+|+.|||+++++++|+|+....++.++...+
T Consensus         2 p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~   81 (166)
T d1xo7a_           2 PVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGKSIY   81 (166)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTT
T ss_pred             CCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccccccCcEEEEEcCCCEEEeCCCCCCCCCCCCCCC
Confidence            78999999999999999999999999999999999999999997766799999999999999999999888888887777


Q ss_pred             CCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEE
Q psy10359        114 GDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTI  193 (249)
Q Consensus       114 ~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I  193 (249)
                      +..++++..... ..+|+|+|++.++++++|||||+++++++||++|+|||||++|||+|++|++++++.+++|.++|+|
T Consensus        82 ~~~~~~~~~~~~-~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I  160 (166)
T d1xo7a_          82 GTRFDDENLKIK-HFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI  160 (166)
T ss_dssp             BSCBCCCCCCSC-CCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEE
T ss_pred             Cccccccccccc-ccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEE
Confidence            777777765544 4699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeee
Q psy10359        194 VDCGHT  199 (249)
Q Consensus       194 ~~cg~l  199 (249)
                      .+||+|
T Consensus       161 ~~cgvl  166 (166)
T d1xo7a_         161 NDCGVL  166 (166)
T ss_dssp             EEEEEC
T ss_pred             EeeEeC
Confidence            999986

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=2e-47  Score=312.35  Aligned_cols=161  Identities=55%  Similarity=0.962  Sum_probs=152.0

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC--------CCccCCCEEEEeecCceeeecCCCCCCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE--------GQGYKGSKFHRVIKDFMIQGGDYTKGDGTG  108 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~--------g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~  108 (249)
                      ++||||||+|+++++|+|+||||.+.||+||+||++||+++.        ++ |+++.|||+++++++|+|++..+++.+
T Consensus         3 ~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~-y~~~~f~rv~~~~~i~~G~~~~~~~~~   81 (172)
T d2igva1           3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLH-FKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (172)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSC-CTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccc-cCCcceeEEEecceEEcCCccCCCCCC
Confidence            578999999999999999999999999999999999998742        45 999999999999999999999888889


Q ss_pred             CCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcc
Q psy10359        109 GASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPV  188 (249)
Q Consensus       109 ~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~  188 (249)
                      +...++..+++|.....|+.+|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|++.++ ++++|.
T Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~-~~g~P~  160 (172)
T d2igva1          82 GESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGS-QSGKPV  160 (172)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCC-TTSCCS
T ss_pred             CcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998775 478999


Q ss_pred             cceEEeeeeee
Q psy10359        189 QGVTIVDCGHT  199 (249)
Q Consensus       189 ~~i~I~~cg~l  199 (249)
                      ++|+|.+||+|
T Consensus       161 ~~i~I~~cG~l  171 (172)
T d2igva1         161 KDCMIADCGQL  171 (172)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCeEEEecccc
Confidence            99999999998

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-47  Score=307.40  Aligned_cols=162  Identities=52%  Similarity=0.901  Sum_probs=151.8

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +++|||||+++++++|+|+||||++.||+||+||++||+++++..|+|+.|||+++++++|+|+.....+.++...++..
T Consensus         2 n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~~~~~~~~   81 (164)
T d2z6wa1           2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSR   81 (164)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCCCcccCCcEEEEecccceEecCCccCCCCCCCccccCCc
Confidence            46899999999999999999999999999999999999885443499999999999999999999887788888888998


Q ss_pred             CCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeee
Q psy10359        117 FEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDC  196 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c  196 (249)
                      ++++.....|+.+|+|||++.++++++|||||++.++++||++|+|||||++|||||++|++++++ +++|.++|+|.+|
T Consensus        82 ~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~-~~~P~~~i~I~~c  160 (164)
T d2z6wa1          82 FPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVITDC  160 (164)
T ss_dssp             BCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCT-TSCCSSCEEEEEE
T ss_pred             CCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCC-CCCCCCCEEEEeC
Confidence            999988899999999999999999999999999999999999999999999999999999999876 6899999999999


Q ss_pred             eee
Q psy10359        197 GHT  199 (249)
Q Consensus       197 g~l  199 (249)
                      |+|
T Consensus       161 G~l  163 (164)
T d2z6wa1         161 GQL  163 (164)
T ss_dssp             EEC
T ss_pred             eec
Confidence            987

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-47  Score=306.15  Aligned_cols=161  Identities=52%  Similarity=0.917  Sum_probs=149.4

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +++|||||+++++++|+|+||||.+.||+||+||++||++.++..|+++.|||++|++++|+|+.....+.++.+.++..
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~~~~~~~~   80 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKK   80 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBEEEEETTTEEEECCTTTSSSSCCCBTTBSC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccccccCCcEEEEEEEeeeEEeeeccCCCCCCCccccCcc
Confidence            36899999999999999999999999999999999999875533399999999999999999999987778888888888


Q ss_pred             CCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeee
Q psy10359        117 FEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDC  196 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c  196 (249)
                      ++++....+|+.+|+|+|++.++++++|||||++.++++||++|+|||||++|||||++|+... +++++|.++|+|.+|
T Consensus        81 ~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~-~~~~~P~~~i~I~~C  159 (161)
T d2r99a1          81 FDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQG-SKDGKPKQKVIIADC  159 (161)
T ss_dssp             BCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTCCCSSCEEEEEE
T ss_pred             ccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccC-CCCCcCCCCEEEEeC
Confidence            8888889999999999999999999999999999999999999999999999999999998765 458999999999999


Q ss_pred             ee
Q psy10359        197 GH  198 (249)
Q Consensus       197 g~  198 (249)
                      |+
T Consensus       160 Ge  161 (161)
T d2r99a1         160 GE  161 (161)
T ss_dssp             EE
T ss_pred             CC
Confidence            95

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=6e-47  Score=306.66  Aligned_cols=160  Identities=55%  Similarity=0.952  Sum_probs=150.8

Q ss_pred             cEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCC
Q psy10359         38 DIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKF  117 (249)
Q Consensus        38 ~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~  117 (249)
                      .+|||||+++++++|+|+||||.+.||+||+||++||+++.|.+|+++.|||++|++++|+|++..+++.++...++..+
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~   81 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGKSIYGAKF   81 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCCSTTCBCCEEETTTEEEECCTTTSSSSCCCBTTBSCB
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCCccCCCEEEEEEecceEecCCCCCCCCCCCcccCCCcc
Confidence            46999999999999999999999999999999999999966656999999999999999999999888888888888999


Q ss_pred             CCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeee
Q psy10359        118 EDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG  197 (249)
Q Consensus       118 ~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg  197 (249)
                      .+|+..++|+.+|+|+|++.++++++|||||++.+.++||++|+|||||++|||||++|+... +++++|.++|+|.+||
T Consensus        82 ~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~-~~~~~P~~~i~I~~cg  160 (162)
T d2cfea1          82 ADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEG-SGSGKPRSRIEIAKCG  160 (162)
T ss_dssp             CCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTC-CTTSCCSSCEEEEEEE
T ss_pred             ccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCC-CCCCCCCCCeEEEeeE
Confidence            999999999999999999999999999999999999999999999999999999999998765 4589999999999999


Q ss_pred             e
Q psy10359        198 H  198 (249)
Q Consensus       198 ~  198 (249)
                      |
T Consensus       161 v  161 (162)
T d2cfea1         161 V  161 (162)
T ss_dssp             E
T ss_pred             c
Confidence            7

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=8e-47  Score=308.85  Aligned_cols=165  Identities=53%  Similarity=0.911  Sum_probs=152.4

Q ss_pred             CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC-----CCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE-----GQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~-----g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      +++++|||||+++++++|+|+|+||.+.||+||+||++||+.++     +.+|+++.|||+++++++|+|+...+.+...
T Consensus         4 ~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~~~   83 (173)
T d1qoia_           4 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGV   83 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCEETTEECSSTTCBCCEEETTTEEEECCTTTSSSCCC
T ss_pred             CCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccccccCCCCCcCCcccceeccceeeccCCcccCCccee
Confidence            47889999999999999999999999999999999999999842     1259999999999999999999887766666


Q ss_pred             CccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCccc
Q psy10359        110 ASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ  189 (249)
Q Consensus       110 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~  189 (249)
                      ...++.+++++.....|+.+|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++++++++++|.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~  163 (173)
T d1qoia_          84 ASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKL  163 (173)
T ss_dssp             CCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSS
T ss_pred             ecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCC
Confidence            66677788888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeee
Q psy10359        190 GVTIVDCGHT  199 (249)
Q Consensus       190 ~i~I~~cg~l  199 (249)
                      +|+|.+||+|
T Consensus       164 ~i~I~~cGel  173 (173)
T d1qoia_         164 PVVISQCGEM  173 (173)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEcccCC
Confidence            9999999985

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.2e-47  Score=308.79  Aligned_cols=161  Identities=50%  Similarity=0.852  Sum_probs=151.1

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCC-------CCCccCCCEEEEeecCceeeecCCCCCCCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRP-------EGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGG  109 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~-------~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~  109 (249)
                      .++|||||+|++|++|+|+||||++.||+||+||++||++.       .++ |+++.|||+++++++|+|+...+++.++
T Consensus         3 r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~~~~~~~~-y~g~~~~rv~~~~~iq~g~~~~~~~~~~   81 (170)
T d1qnga_           3 RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLH-YKNSIFHRIIPQFMCQGGDITNGNGSGG   81 (170)
T ss_dssp             SCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEECTTSSEEC-CTTCBCCEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhccccccccCccCc-cCcccceEEEeCceEEecCccCCCCCCC
Confidence            57899999999999999999999999999999999999863       245 9999999999999999999988888888


Q ss_pred             CccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCccc
Q psy10359        110 ASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQ  189 (249)
Q Consensus       110 ~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~  189 (249)
                      ...++..++++...+.|+.+|+|+|++.++++++|||||+++++++||++|+|||||++|||||++|++.+++ +++|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~-~g~P~~  160 (170)
T d1qnga_          82 ESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKR  160 (170)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCT-TCCCSS
T ss_pred             cccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCC-CcCCcc
Confidence            8888999999999999999999999999999999999999999999999999999999999999999998775 688999


Q ss_pred             ceEEeeeeee
Q psy10359        190 GVTIVDCGHT  199 (249)
Q Consensus       190 ~i~I~~cg~l  199 (249)
                      +|+|++||+|
T Consensus       161 ~i~I~~CG~l  170 (170)
T d1qnga_         161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEcC
Confidence            9999999986

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=2.3e-46  Score=306.39  Aligned_cols=163  Identities=50%  Similarity=0.845  Sum_probs=153.2

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC---------CCccCCCEEEEeecCceeeecCCCCCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE---------GQGYKGSKFHRVIKDFMIQGGDYTKGDGT  107 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~---------g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~  107 (249)
                      ..+|||||+++++.+|+|+||||.|.||+||+||++||+++.         ++ |+++.|||+++++++|+|+...+++.
T Consensus         3 ~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~-Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           3 RRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLH-YKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCC-CTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccce-eCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            468999999999999999999999999999999999998742         35 99999999999999999999888888


Q ss_pred             CCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCc
Q psy10359        108 GGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRP  187 (249)
Q Consensus       108 ~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P  187 (249)
                      ++.+.++....++....+|+.+|+++|++.++++++|||||+++++|+||++|+|||||++|||||++|++++++++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            88888888788888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEEeeeeeec
Q psy10359        188 VQGVTIVDCGHTP  200 (249)
Q Consensus       188 ~~~i~I~~cg~l~  200 (249)
                      .++|+|.+||+|+
T Consensus       162 ~~~i~I~~cGel~  174 (174)
T d1a33a_         162 LADVVILNCGELV  174 (174)
T ss_dssp             SSCEEEEEEEECC
T ss_pred             CCCEEEEeeEEEC
Confidence            9999999999984

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-46  Score=309.62  Aligned_cols=169  Identities=49%  Similarity=0.851  Sum_probs=156.0

Q ss_pred             CCcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCC---------CCccCCCEEEEeecCceeeecCCCCC
Q psy10359         34 PKVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPE---------GQGYKGSKFHRVIKDFMIQGGDYTKG  104 (249)
Q Consensus        34 ~~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~---------g~~Y~g~~f~ri~~~~~iq~Gd~~~~  104 (249)
                      .+.+++|||||+++++++|+|+||||.+.||+||+||++||+++.         ++ |+|+.|||+++++++|+|+....
T Consensus        11 ~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~-y~g~~f~rv~~~~~i~~G~~~~~   89 (195)
T d1ihga2          11 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLH-FKGCPFHRIIKKFMIQGGDFSNQ   89 (195)
T ss_dssp             CTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSC-CTTCBEEEEETTTEEEECCTTTS
T ss_pred             CCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccc-cCCceeeEEEcCceeecCCccCC
Confidence            345899999999999999999999999999999999999998753         24 99999999999999999998877


Q ss_pred             CCCCCCccCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCC
Q psy10359        105 DGTGGASIYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGR  184 (249)
Q Consensus       105 ~~~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~  184 (249)
                      .+.++...++..+++|.....|+.+|+|+|++.++++++|||||+|+++++||++|+|||||++|||||++|++++++ +
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~-~  168 (195)
T d1ihga2          90 NGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-G  168 (195)
T ss_dssp             SSSCCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEE-T
T ss_pred             CCCCCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCC-C
Confidence            777888888889999999999999999999999999999999999999999999999999999999999999998876 6


Q ss_pred             CCcccceEEeeeeeeccCCC
Q psy10359        185 DRPVQGVTIVDCGHTPVEEP  204 (249)
Q Consensus       185 ~~P~~~i~I~~cg~l~~~~p  204 (249)
                      ++|.++|+|.+||+|...++
T Consensus       169 ~~P~~~i~I~~cG~l~~~~~  188 (195)
T d1ihga2         169 EKPAKLCVIAECGELKEGDD  188 (195)
T ss_dssp             TEESSCEEEEEEEEECTTCC
T ss_pred             CCcCCCeEEEECcccCCCCc
Confidence            89999999999999976543

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=4.4e-45  Score=301.91  Aligned_cols=163  Identities=47%  Similarity=0.844  Sum_probs=152.3

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCC-----CccCCCEEEEeecCceeeecCCCCCCCCCCCc
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEG-----QGYKGSKFHRVIKDFMIQGGDYTKGDGTGGAS  111 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g-----~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~  111 (249)
                      +++|||||+++++++|+|+||||.|.||+||+||++||+++++     .+|+|+.|||+++++++|+|+.....+.+...
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~~~   95 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLS   95 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCCCB
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccCCcccccCCCeeeeeecceeeecCCccccCCccccc
Confidence            6889999999999999999999999999999999999999542     24999999999999999999988777777778


Q ss_pred             cCCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEcc--HHHHHHHHhCCCCC-CCCcc
Q psy10359        112 IYGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITG--GDIVKKIESSETDG-RDRPV  188 (249)
Q Consensus       112 ~~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G--~~vl~~I~~~~~~~-~~~P~  188 (249)
                      .++..++++.....|+.+|+++|++.++++++|||||+++++++||++|+|||||++|  ||+|++|+++++++ +++|.
T Consensus        96 ~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~  175 (186)
T d1z81a1          96 IYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPK  175 (186)
T ss_dssp             TTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBS
T ss_pred             ccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccC
Confidence            8888999999999999999999999999999999999999999999999999999998  99999999999875 68999


Q ss_pred             cceEEeeeeee
Q psy10359        189 QGVTIVDCGHT  199 (249)
Q Consensus       189 ~~i~I~~cg~l  199 (249)
                      ++|+|.+||++
T Consensus       176 ~~i~I~~CGel  186 (186)
T d1z81a1         176 IPINVVECGEL  186 (186)
T ss_dssp             SCEEEEEEEEC
T ss_pred             CCEEEEeCCcC
Confidence            99999999985

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-44  Score=294.38  Aligned_cols=161  Identities=42%  Similarity=0.743  Sum_probs=148.2

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~  127 (249)
                      |+.|+|+||||.+.||+||+||++||++  |+ |+|+.|||+++++++|+|+.. ..+.++...++.++++|.. .++|+
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~--~~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~~~~l~~~   82 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKK--HY-YDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEFRPNLSHT   82 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHT--TT-TTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCCCTTCCSC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhc--CC-cCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCccccccCCC
Confidence            9999999999999999999999999999  66 999999999999999999987 4567778888899998854 68898


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCC-CCCCcccceEEeeeeeeccCCCch
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETD-GRDRPVQGVTIVDCGHTPVEEPFS  206 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~-~~~~P~~~i~I~~cg~l~~~~p~~  206 (249)
                      .+|+|+|+++++++++|||||+++++++||++|+|||||++|||+|++|++++++ .+++|.++|+|.+|.++  .+||.
T Consensus        83 ~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il--~~pf~  160 (178)
T d1zkca1          83 GRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF--VDPYE  160 (178)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE--ECTTH
T ss_pred             CCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE--cCCcc
Confidence            9999999999999999999999999999999999999999999999999999987 46899999999999999  68999


Q ss_pred             hhhhhhccc
Q psy10359        207 DVVKKIESS  215 (249)
Q Consensus       207 ~vv~~iE~~  215 (249)
                      ++...+.+.
T Consensus       161 ~~~~~~~~~  169 (178)
T d1zkca1         161 EADAQIAQE  169 (178)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhHHHhhh
Confidence            887666543

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=8.5e-45  Score=296.37  Aligned_cols=162  Identities=56%  Similarity=0.954  Sum_probs=121.1

Q ss_pred             cEEEEEEE-----ECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCcc
Q psy10359         38 DIVWFQIQ-----IGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASI  112 (249)
Q Consensus        38 ~~v~~di~-----i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~  112 (249)
                      ++|||||+     +++|++|+|+||||.+.||+||+||++||+++.+.+|+++.|||++|++++|+|++..+++.++...
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~y~~~~f~ri~~~~~iq~G~~~~~~~~~~~~~   81 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSI   81 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTSSTTCBCCEEETTTEEEECC------------
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhcccccccCceeeEEEEEEeeEcCCccCCCCCCCCcC
Confidence            47999998     6779999999999999999999999999998665569999999999999999999988888887778


Q ss_pred             CCCCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEE--ccHHHHHHHHhCCCCC-CCCccc
Q psy10359        113 YGDKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI--TGGDIVKKIESSETDG-RDRPVQ  189 (249)
Q Consensus       113 ~~~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi--~G~~vl~~I~~~~~~~-~~~P~~  189 (249)
                      ++..+.++...+.|+.+|+|||++.++++++|||||++++.|+||++|+|||||+  +||+||++|++++++. +.+|..
T Consensus        82 ~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~  161 (171)
T d2c3ba1          82 YGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNT  161 (171)
T ss_dssp             ----------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSS
T ss_pred             CCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCC
Confidence            8888888888899999999999999999999999999999999999999999999  4999999999998876 346888


Q ss_pred             ceEEeeeeee
Q psy10359        190 GVTIVDCGHT  199 (249)
Q Consensus       190 ~i~I~~cg~l  199 (249)
                      +|+|.+||+|
T Consensus       162 ~v~I~~cGel  171 (171)
T d2c3ba1         162 RPKIVNCGEL  171 (171)
T ss_dssp             CCEEEEEEEC
T ss_pred             CEEEEeCccC
Confidence            8999999875

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.2e-44  Score=287.60  Aligned_cols=151  Identities=46%  Similarity=0.723  Sum_probs=137.6

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCc-ccCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDEN-FKLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~-~~~~h~  127 (249)
                      |+.|+|+||||.+.||+||+||++||++  |+ |+|+.|||+++++++|+||.... ..++...++..+++|. ..++|+
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~--g~-Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~~~~~~~~   82 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALCAS--NY-YNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEYSEYLKHN   82 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCCCTTCCSC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHHhh--hc-ccceeEecccCCeEEEeCCcccc-CCCCcccCCCccccccccCCCCC
Confidence            9999999999999999999999999999  66 99999999999999999998744 3445556677777774 458899


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCC-CCCcccceEEeeeeeeccCCCc
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDG-RDRPVQGVTIVDCGHTPVEEPF  205 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~-~~~P~~~i~I~~cg~l~~~~p~  205 (249)
                      ++|+|+|++.++++++|||||++++.|+||++|+|||||++||++|++|+++++++ +++|.++|+|.+|+++  .|||
T Consensus        83 ~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~--~~Pf  159 (159)
T d2ok3a1          83 VRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH--ANPF  159 (159)
T ss_dssp             STTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE--CCSC
T ss_pred             CCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEE--eCCC
Confidence            99999999999999999999999999999999999999999999999999999875 5789999999999998  7887

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-43  Score=283.72  Aligned_cols=151  Identities=54%  Similarity=0.928  Sum_probs=140.7

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      .++|+|+     |++|+|+||||.+.||+||+||++||+.  |+ |+|+.|||+++++++|+||+. +.+.++...++..
T Consensus        11 ~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~~--g~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~   81 (166)
T d1xwna1          11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARR--GY-YNGTKFHRIIKDFMIQGGDPT-GTGRGGASIYGKQ   81 (166)
T ss_dssp             CCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHHHH--TS-STTCCEEEEETTTEEEECCST-TTTSSCCCSSCSC
T ss_pred             CCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHHhc--CC-cCceeeeEEcccEEEEeCCCC-CCCCCCccCCCCc
Confidence            4689998     9999999999999999999999999999  66 999999999999999999986 5566777788888


Q ss_pred             CCCCc-ccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEee
Q psy10359        117 FEDEN-FKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVD  195 (249)
Q Consensus       117 ~~~e~-~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~  195 (249)
                      +++|. ..+.|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|++++++++++|.++|+|.+
T Consensus        82 ~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~  161 (166)
T d1xwna1          82 FEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIK  161 (166)
T ss_dssp             CCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEE
T ss_pred             cccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEE
Confidence            88885 46888899999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             e
Q psy10359        196 C  196 (249)
Q Consensus       196 c  196 (249)
                      +
T Consensus       162 a  162 (166)
T d1xwna1         162 A  162 (166)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=3.1e-42  Score=276.76  Aligned_cols=146  Identities=52%  Similarity=0.830  Sum_probs=136.6

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcc-cCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENF-KLSHY  127 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~-~~~h~  127 (249)
                      |++|+|+||||.+.||++|+||++||++  |+ |+|+.|||+++++++|+|++. +.+.++.+.++..+++|.. .+.|.
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~--g~-Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~~~~~~~~   83 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEFFDHLNHS   83 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCCBTTBCSS
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhC--Cc-cccceeeeeeecceeeccCCC-CCCcCCcccCCCccccccccccccC
Confidence            9999999999999999999999999999  66 999999999999999999987 5556777888888888876 47888


Q ss_pred             cceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeeee
Q psy10359        128 GSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCGH  198 (249)
Q Consensus       128 ~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~  198 (249)
                      ++|+++|++.++++++|||||++++.|+||++|+|||||++|||||++|++++++++++|.++|+|.+|.+
T Consensus        84 ~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          84 KPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             SSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             CccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999853

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=4.1e-42  Score=279.88  Aligned_cols=151  Identities=43%  Similarity=0.735  Sum_probs=137.3

Q ss_pred             EEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCC
Q psy10359         40 VWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFED  119 (249)
Q Consensus        40 v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~  119 (249)
                      .|+.+.   |+.|+|+||||.+.||++|+||++||+.  |+ |+++.|||+++++++|||+.. +...++.+..+..+++
T Consensus        17 ~~V~l~---T~~G~i~IeL~~d~aP~tv~nF~~L~~~--g~-Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~~~~~~~~~~   89 (169)
T d2b71a1          17 GYITIY---TNLGDFEVELYWYHSPKTCLNFYTLCEM--GF-YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFED   89 (169)
T ss_dssp             CEEEEE---ETTEEEEEEECTTTSHHHHHHHHHHHHT--TT-TTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCBCC
T ss_pred             cEEEEE---eCceeEEEEEeCCCCcHHHHHHHHHhhC--Cc-cceeeeccccceeeEeccccc-cccCCCcccccccccc
Confidence            345554   9999999999999999999999999999  66 999999999999999999987 4445566667777888


Q ss_pred             Ccc-cCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCCCCCcccceEEeeee
Q psy10359        120 ENF-KLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDGRDRPVQGVTIVDCG  197 (249)
Q Consensus       120 e~~-~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg  197 (249)
                      |.. .++|.++|+|+|++.+|++++|||||++++.++||++|+|||||++|||||++|++++++++++|..+|+|.+|+
T Consensus        90 e~~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          90 EINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             ccccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            754 588999999999999999999999999999999999999999999999999999999999999999999999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-41  Score=272.61  Aligned_cols=152  Identities=33%  Similarity=0.496  Sum_probs=132.6

Q ss_pred             ccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         37 TDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        37 t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      +++|.|+     |+.|+|+||||.+.||+||+||++||+.  |+ |+|+.|||+++++++|+|+...+.+.+   .++.+
T Consensus         4 ~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~~--~~-Y~g~~fhRv~~~~~iq~G~~~~~~~~~---~~~~~   72 (166)
T d1v9ta_           4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNS--GF-YNNTTFHRVIPGFMIQGGGFTEQMQQK---KPNPP   72 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBEEEEETTTEEEESSBCTTCCBC---CCCCC
T ss_pred             CCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHhhC--Cc-cccceeeEEEEEeecccCCcCCccccc---CCCCC
Confidence            4578888     9999999999999999999999999999  66 999999999999999999987554443   34677


Q ss_pred             CCCCcccCCCCcceEEEEecC-CCCCCCceEEEEcCCCCCCCCC-----ceEEEEEEccHHHHHHHHhCCCCCC----CC
Q psy10359        117 FEDENFKLSHYGSGWLSMANA-GKDTNGSQFFITTKKTPWLDGR-----HVVFGKVITGGDIVKKIESSETDGR----DR  186 (249)
Q Consensus       117 ~~~e~~~~~h~~~G~vsm~~~-~~~~~~SqFfItl~~~~~ld~~-----~~vFG~Vi~G~~vl~~I~~~~~~~~----~~  186 (249)
                      +++|.....|+.+|.|+|++. ++++++|||||++++.++||++     |+|||+|++|||+|++|+++++++.    ++
T Consensus        73 ~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~  152 (166)
T d1v9ta_          73 IKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNV  152 (166)
T ss_dssp             BCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEE
T ss_pred             ccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCc
Confidence            888877655556999999884 5899999999999999988864     8999999999999999999988653    48


Q ss_pred             cccceEEeeeeee
Q psy10359        187 PVQGVTIVDCGHT  199 (249)
Q Consensus       187 P~~~i~I~~cg~l  199 (249)
                      |.++|+|.+|+++
T Consensus       153 P~~~v~I~~~~vl  165 (166)
T d1v9ta_         153 PSKPVVILSATVL  165 (166)
T ss_dssp             ESSCCBEEEEEEC
T ss_pred             cCCCeEEEEEEEc
Confidence            9999999999887

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-40  Score=268.53  Aligned_cols=156  Identities=40%  Similarity=0.651  Sum_probs=135.9

Q ss_pred             CcccEEEEEEEECceeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCC
Q psy10359         35 KVTDIVWFQIQIGEVNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYG  114 (249)
Q Consensus        35 ~~t~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~  114 (249)
                      +.+.++.++     |+.|+|+||||.+.||+||+||++||+.  |+ |+|+.|||+++++++|+|++......+.....+
T Consensus         7 ~~~~~a~~~-----T~~G~i~ieL~~~~aP~tv~nF~~l~~~--g~-Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~   78 (164)
T d2a2na1           7 RVSDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSRN--GY-YNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGG   78 (164)
T ss_dssp             CCCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHT--TT-TTTCBCCEEETTTEEEECCTTSSSSCCCCTTSS
T ss_pred             cccCEEEEE-----eceeEEEEEEcCCCChHHHHHHHHHHhC--CC-cccceeeEEeeeeeEeecccccccCCCceeeec
Confidence            456677776     9999999999999999999999999999  66 999999999999999999987554333333333


Q ss_pred             CCCCCCcccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEEccHHHHHHHHhCCCCC-CCCcccceEE
Q psy10359        115 DKFEDENFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVITGGDIVKKIESSETDG-RDRPVQGVTI  193 (249)
Q Consensus       115 ~~~~~e~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~-~~~P~~~i~I  193 (249)
                      ....++...++|+++|+++|++.++++++|||||++++.++||++|+|||||++||+||++|++++++. +++|.++|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I  158 (164)
T d2a2na1          79 EFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSI  158 (164)
T ss_dssp             CBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBE
T ss_pred             ccccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEE
Confidence            333334567889999999999999999999999999999999999999999999999999999999985 5899999999


Q ss_pred             eeeee
Q psy10359        194 VDCGH  198 (249)
Q Consensus       194 ~~cg~  198 (249)
                      .+|.+
T Consensus       159 ~~v~i  163 (164)
T d2a2na1         159 INITV  163 (164)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99865

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.9e-39  Score=264.34  Aligned_cols=146  Identities=50%  Similarity=0.772  Sum_probs=127.8

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCC------------ccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCC
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQ------------GYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDK  116 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~------------~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~  116 (249)
                      |+.|+|+||||++.||+||+||++||+++.++            .|+++.|||+++++++|||++.. .+.++.   ...
T Consensus        10 T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~~~~~~---~~~   85 (171)
T d1w74a_          10 TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-TGRGGP---GYK   85 (171)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-SSSCCS---SCC
T ss_pred             ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-CCCCCc---ccc
Confidence            99999999999999999999999999985321            29999999999999999999873 223222   223


Q ss_pred             CCCC-cccCCCCcceEEEEecCCCCCCCceEEEEcCCCCCCCCCceEEEEEE--ccHHHHHHHHhCCCCCCCCcccceEE
Q psy10359        117 FEDE-NFKLSHYGSGWLSMANAGKDTNGSQFFITTKKTPWLDGRHVVFGKVI--TGGDIVKKIESSETDGRDRPVQGVTI  193 (249)
Q Consensus       117 ~~~e-~~~~~h~~~G~vsm~~~~~~~~~SqFfItl~~~~~ld~~~~vFG~Vi--~G~~vl~~I~~~~~~~~~~P~~~i~I  193 (249)
                      +++| ...++|+++|+|+|++.++++++|||||++++.|+||++|+|||||+  +|||||++|++++++++++|.++|+|
T Consensus        86 ~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I  165 (171)
T d1w74a_          86 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI  165 (171)
T ss_dssp             BCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEE
T ss_pred             cccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEE
Confidence            4444 45688999999999999999999999999999999999999999999  49999999999999999999999999


Q ss_pred             eeeee
Q psy10359        194 VDCGH  198 (249)
Q Consensus       194 ~~cg~  198 (249)
                      .++.+
T Consensus       166 ~~v~i  170 (171)
T d1w74a_         166 ESITI  170 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99764

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-38  Score=257.35  Aligned_cols=145  Identities=32%  Similarity=0.475  Sum_probs=124.7

Q ss_pred             eeeeeEEEEEeCCCCcchHHHHHHhhcCCCCCccCCCEEEEeecCceeeecCCCCCCCCCCCccCCCCCCCCcccCCCCc
Q psy10359         49 VNVGKIEIGLFGKTVPRTVQNFIELAKRPEGQGYKGSKFHRVIKDFMIQGGDYTKGDGTGGASIYGDKFEDENFKLSHYG  128 (249)
Q Consensus        49 t~~G~i~ieL~~~~aP~t~~nF~~l~~~~~g~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~  128 (249)
                      |+.|+|+||||.+.||+||+||++||+.  |+ |+|+.|||+++++++|+|+.....+.+   .++.++++|.....++.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~~~--g~-Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~~~~~~h~   79 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYCRE--GF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKNT   79 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHT--TT-TTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCCCCSSCCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHHHc--cC-cCCceeeEEcCCceeeeeccccCCcCC---ccCCCccccccccccce
Confidence            9999999999999999999999999999  66 999999999999999999876443322   34667888765444445


Q ss_pred             ceEEEEecC-CCCCCCceEEEEcCCC--------CCCCCCceEEEEEEccHHHHHHHHhCCCCCC----CCcccceEEee
Q psy10359        129 SGWLSMANA-GKDTNGSQFFITTKKT--------PWLDGRHVVFGKVITGGDIVKKIESSETDGR----DRPVQGVTIVD  195 (249)
Q Consensus       129 ~G~vsm~~~-~~~~~~SqFfItl~~~--------~~ld~~~~vFG~Vi~G~~vl~~I~~~~~~~~----~~P~~~i~I~~  195 (249)
                      +|.|+|+++ ++++++|||||++.+.        ++||++|+|||+|++|||||++|+++++++.    ++|.++|+|.+
T Consensus        80 ~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~~  159 (164)
T d1lopa_          80 RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIES  159 (164)
T ss_dssp             TTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEE
T ss_pred             eeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEEE
Confidence            899999875 6899999999999865        7899999999999999999999999998754    48999999999


Q ss_pred             eeee
Q psy10359        196 CGHT  199 (249)
Q Consensus       196 cg~l  199 (249)
                      +.+.
T Consensus       160 v~I~  163 (164)
T d1lopa_         160 VTVS  163 (164)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8664

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=97.28  E-value=4.3e-05  Score=60.33  Aligned_cols=43  Identities=47%  Similarity=0.654  Sum_probs=39.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeeecCCC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDA  248 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~~~~~  248 (249)
                      .+++++|++.+++.+++|+++|+|++||+|..+.||.++--+|
T Consensus       140 ~dvl~~I~~~~~~~~~~P~~~v~I~~~g~l~~~~P~~~~~p~~  182 (182)
T d2rmca_         140 MTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVVEVPDW  182 (182)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEEECCCSCC
T ss_pred             HHHHHHHHhCCcCCCCcCCCCeEEEEeeEEeCCCCccccCCCC
Confidence            5899999999999999999999999999999889999887766

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=97.15  E-value=3.5e-05  Score=60.79  Aligned_cols=43  Identities=47%  Similarity=0.669  Sum_probs=39.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeeecCCC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVEKDDA  248 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~~~~~  248 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|..+.||.++++-+
T Consensus       139 ~dvl~~I~~~~~~~~~~P~~~v~I~~cG~l~~~~p~~~~~~~~  181 (182)
T d1h0pa_         139 MDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVEREAV  181 (182)
T ss_dssp             HHHHHHHHTSCEETTTEESSCEEEEEEEEEEEEEEEECCSSCC
T ss_pred             HHHHHHHHhcCCCCCCCCCCCEEEEECCeEeCCCCCccccccc
Confidence            5789999999999999999999999999999999999998743

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=96.40  E-value=0.00063  Score=52.76  Aligned_cols=30  Identities=40%  Similarity=0.748  Sum_probs=28.3

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|
T Consensus       144 ~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (174)
T d1a33a_         144 QEVVTKIEYLKTNSKNRPLADVVILNCGEL  173 (174)
T ss_dssp             HHHHHHHHTSCBCTTSCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCcCCCCCCCCCEEEEeeEEE
Confidence            579999999999999999999999999997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=96.08  E-value=0.0008  Score=52.10  Aligned_cols=30  Identities=33%  Similarity=0.477  Sum_probs=28.0

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|+++|+|.+||||
T Consensus       144 ~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (173)
T d1qoia_         144 LLVMRKIENVPTGPNNKPKLPVVISQCGEM  173 (173)
T ss_dssp             HHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCcCCCCcCCCCEEEEcccCC
Confidence            578999999999989999999999999996

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.60  E-value=0.0015  Score=51.63  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccCCcCceeee
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTPVEEPFSVE  244 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~~~~~~~v~  244 (249)
                      .+++++|++.+++ +++|.++|+|.+||+|+..+++-|.
T Consensus       155 mdvl~~I~~~~t~-~~~P~~~i~I~~cG~l~~~~~~~~~  192 (195)
T d1ihga2         155 MGVAKILENVEVK-GEKPAKLCVIAECGELKEGDDWGIF  192 (195)
T ss_dssp             HHHHHHHHTSCEE-TTEESSCEEEEEEEEECTTCCCCCS
T ss_pred             HHHHHHHHcCCCC-CCCcCCCeEEEECcccCCCCcCCCC
Confidence            5789999988775 5899999999999999998877665

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.21  E-value=0.0027  Score=48.69  Aligned_cols=30  Identities=47%  Similarity=0.737  Sum_probs=27.9

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+++|.++|+|.+||+|
T Consensus       137 ~~vl~~I~~~~~~~~~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         137 MDVVKKVENTKTGLNDKPKKAVKINDCGVL  166 (166)
T ss_dssp             HHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCEEEEeeEeC
Confidence            578999999999989999999999999986

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.57  E-value=0.0064  Score=46.38  Aligned_cols=29  Identities=45%  Similarity=0.641  Sum_probs=25.6

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++ +++|.++|+|.+||+|
T Consensus       135 ~dvl~~I~~~~~~-~~~P~~~i~I~~cG~l  163 (164)
T d2z6wa1         135 MDVVKKIESFGSK-SGRTSKKIVITDCGQL  163 (164)
T ss_dssp             HHHHHHHHHTCCT-TSCCSSCEEEEEEEEC
T ss_pred             HHHHHHHHhCCCC-CCCCCCCEEEEeCeec
Confidence            5789999988875 5899999999999998

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=94.14  E-value=0.0099  Score=45.64  Aligned_cols=30  Identities=40%  Similarity=0.662  Sum_probs=25.3

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|+...+ .+++|+++|+|++||+|.
T Consensus       143 mdvl~~I~~~~~-~~g~P~~~i~I~~cG~l~  172 (172)
T d2igva1         143 LDVVKAVESNGS-QSGKPVKDCMIADCGQLK  172 (172)
T ss_dssp             HHHHHHHHTTCC-TTSCCSSCEEEEEEEEEC
T ss_pred             HHHHHHHHcCCC-CCCCCCCCeEEEeccccC
Confidence            478999988665 468999999999999983

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=94.12  E-value=0.0091  Score=46.47  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=26.0

Q ss_pred             hhhhhhhccccCCC-CCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDG-RDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~-~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|+..+++. .++|.++|+|++||+|
T Consensus       156 mdvv~kI~~~~~~~~~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         156 LLLLKKIENVSVTPYIYKPKIPINVVECGEL  186 (186)
T ss_dssp             HHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             HHHHHHHhccCCCCCCCccCCCEEEEeCCcC
Confidence            36899999988864 6799999999999986

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.93  E-value=0.012  Score=45.00  Aligned_cols=29  Identities=28%  Similarity=0.471  Sum_probs=25.0

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++ .++|.++|+|++||+|
T Consensus       142 mdvl~~I~~~~~~-~g~P~~~i~I~~CG~l  170 (170)
T d1qnga_         142 MNVVREMEKEGAK-SGYVKRSVVITDCGEL  170 (170)
T ss_dssp             HHHHHHHHTTCCT-TCCCSSCEEEEEEEEC
T ss_pred             HHHHHHHHhcCCC-CcCCccCEEEEeeEcC
Confidence            4789999987765 4799999999999986

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.026  Score=42.76  Aligned_cols=28  Identities=39%  Similarity=0.673  Sum_probs=23.7

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGY  234 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~  234 (249)
                      .+++++|+... +.+++|+++|+|.+|||
T Consensus       134 ~dvl~~I~~~~-~~~~~P~~~i~I~~CGe  161 (161)
T d2r99a1         134 LDVLRQIEAQG-SKDGKPKQKVIIADCGE  161 (161)
T ss_dssp             HHHHHHHHTTC-CTTCCCSSCEEEEEEEE
T ss_pred             HHHHHHHHccC-CCCCcCCCCEEEEeCCC
Confidence            58899998654 45789999999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=92.29  E-value=0.03  Score=42.78  Aligned_cols=31  Identities=32%  Similarity=0.388  Sum_probs=26.1

Q ss_pred             chhhhhhhccccCCC-CCCCccceEEeecCcc
Q psy10359        205 FSDVVKKIESSETDG-RDRPVQGVTIVDCGYT  235 (249)
Q Consensus       205 ~~~vv~~iE~~~~~~-~d~P~~~v~i~~~g~l  235 (249)
                      =.+++++|++.+++. ..+|.++|+|++||||
T Consensus       140 G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         140 SYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             HHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             CHHHHHHHHcCCCCCCCcCCCCCEEEEeCccC
Confidence            357899999988865 4589999999999996

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=88.74  E-value=0.029  Score=42.60  Aligned_cols=31  Identities=29%  Similarity=0.419  Sum_probs=25.9

Q ss_pred             hhhhhhhccccCCC----CCCCccceEEeecCccC
Q psy10359        206 SDVVKKIESSETDG----RDRPVQGVTIVDCGYTP  236 (249)
Q Consensus       206 ~~vv~~iE~~~~~~----~d~P~~~v~i~~~g~l~  236 (249)
                      .+++++|++.+++.    .++|+++|+|.+|+.||
T Consensus       132 ~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         132 MDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             HHHHHHHHTSCEEEETTEEEEESSCCBEEEEEECC
T ss_pred             HHHHHHHHhCcccCCCCCCCccCCCeEEEEEEEcC
Confidence            36889999888653    35999999999999997

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=86.34  E-value=0.17  Score=37.97  Aligned_cols=28  Identities=36%  Similarity=0.686  Sum_probs=23.4

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecCc
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCGY  234 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g~  234 (249)
                      .+++++|+... +.+++|.++|+|.+||.
T Consensus       134 ~dvl~~I~~~~-~~~~~P~~~i~I~~cgv  161 (162)
T d2cfea1         134 MNVVKAIEAEG-SGSGKPRSRIEIAKCGV  161 (162)
T ss_dssp             HHHHHHHHTTC-CTTSCCSSCEEEEEEEE
T ss_pred             HHHHHHHhcCC-CCCCCCCCCeEEEeeEc
Confidence            57899997644 45789999999999995

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.08  E-value=0.22  Score=37.11  Aligned_cols=30  Identities=20%  Similarity=0.347  Sum_probs=26.1

Q ss_pred             hhhhhhhccccCCCC-CCCccceEEeecCcc
Q psy10359        206 SDVVKKIESSETDGR-DRPVQGVTIVDCGYT  235 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~-d~P~~~v~i~~~g~l  235 (249)
                      .+++++|++.+++.+ .+|.++|+|.+|+.|
T Consensus       125 ~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~  155 (159)
T d2ok3a1         125 LETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (159)
T ss_dssp             HHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             hHHHHHHHcCcCCCCCCCcCCCcEEEEEEEE
Confidence            478999999998754 589999999999987

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=82.94  E-value=0.26  Score=37.10  Aligned_cols=28  Identities=18%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             hhhhhhhccccCCCCCCCccceEEeecC
Q psy10359        206 SDVVKKIESSETDGRDRPVQGVTIVDCG  233 (249)
Q Consensus       206 ~~vv~~iE~~~~~~~d~P~~~v~i~~~g  233 (249)
                      .+++.+|++.+++.+++|+++|+|++++
T Consensus       141 ~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1         141 MTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             HHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             HHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            4789999999999999999999999985