Psyllid ID: psy10386

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLVCIVF
Secondary Structure (PSIPRED)
cEEcccccccEEccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccHHHHHHHHccccccccccccEEEccccccccccccEEEcccccEEEccccccccccccccccEEEccEEEEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccccHHcccccccEEEcccccccccccccccccccccEEEcccccccEEcccccccccccccccccHHHHHHHHHHHHHccccHHHHccccEEEccccccccccccccccccHcEcccccccccccccccccccccccEEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
mieiwggqLSSIFEKVAtsgglhnldSLVLAHnqlrtipprvfahlpllnsleldgnhihtvdpaafsglednplvctcdlmwykewstslgekedeqmsrkrtvctlgssnvhqreiklsdlpkqlvcegekggrrspnsapsaslSGSFIALLVAAADLVCIVF
Flexible Loop (DISEMBL)
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTslgekedeqmsRKRTvctlgssnvhqreiklsdlpKQLVCEgekggrrspnsapsaSLSGSFIALLVAAADLVCIVF
Low Complexity Region (SEG)
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLVCIVF
Disordered region (IsUnstruct)
**EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWST***********************************************************GSFIALLVAAADLVCIV*
Disordered Region (DISOPRED)
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKED**MSR**T*CTL*********IKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLVCIVF
Disordered Region (DISEMBL)
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTS*************TVCTLGSSNVHQREIKLSDLPKQLVC****************SLSGSFIALLVAAADLVCIVF
Disordered Region (DISPRO)
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGE*******NSAPSASLSGSFIALLVAAADLVCIVF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLVCIVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
Q9R1B9	1521	Slit homolog 2 protein OS	yes	N/A	0.530	0.057	0.326	5e-08
O94813	1529	Slit homolog 2 protein OS	yes	N/A	0.530	0.057	0.326	5e-08
Q6GU68	428	Immunoglobulin superfamil	no	N/A	0.463	0.179	0.352	1e-06
A4IFA6	428	Immunoglobulin superfamil	no	N/A	0.463	0.179	0.352	1e-06
Q91044	827	NT-3 growth factor recept	no	N/A	0.734	0.147	0.286	1e-06
Q5NVQ6	428	Immunoglobulin superfamil	yes	N/A	0.463	0.179	0.363	2e-06
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.463	0.050	0.372	2e-06
Q9Z1P4	907	Leucine-rich repeat-conta	no	N/A	0.409	0.074	0.428	2e-06
O75094	1523	Slit homolog 3 protein OS	no	N/A	0.463	0.050	0.372	3e-06
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.463	0.050	0.372	3e-06

>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 1   MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
           +I++   ++S++  +  ++  +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct: 773 LIDLSNNRISTLSNQSFSN--MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 830

Query: 61  TVDPAAFSGLE--------DNPLVCTCDLMWYKEWSTS 90
            V   AF+ L          NPL C C++ W  +W  S
Sbjct: 831 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 868

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development, may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system, appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.
Mus musculus (taxid: 10090)

>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 1   MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
           +I++   ++S++  +  ++  +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct: 781 LIDLSNNRISTLSNQSFSN--MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 838

Query: 61  TVDPAAFSGLE--------DNPLVCTCDLMWYKEWSTS 90
            V   AF+ L          NPL C C++ W  +W  S
Sbjct: 839 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 876

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Homo sapiens (taxid: 9606)

>sp|Q6GU68|ISLR_MOUSE Immunoglobulin superfamily containing leucine-rich repeat protein OS=Mus musculus GN=Islr PE=1 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 22  LHNLDSLVLAH---NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL-------- 70
           LHNL +L L     N+L  IP   F+ L  L SL+L+ N +H +    F+ L        
Sbjct: 118 LHNLSALQLLKMDSNELAFIPRDAFSSLSALRSLQLNHNRLHALAEGTFAPLTALSHLQI 177

Query: 71  EDNPLVCTCDLMWYKEWSTSLGEKEDEQ 98
            DNP  CTC ++W+K W+ +      EQ
Sbjct: 178 NDNPFDCTCGIVWFKTWALASAVSIPEQ 205

Mus musculus (taxid: 10090)

>sp|A4IFA6|ISLR_BOVIN Immunoglobulin superfamily containing leucine-rich repeat protein OS=Bos taurus GN=ISLR PE=2 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 22  LHNLDSLVLAH---NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL-------- 70
           LH+L +L L     N+L  IP   F  L  L SL+L+ N +HT+    F+ L        
Sbjct: 118 LHSLSALQLLKMDSNELTFIPRDAFRSLRALRSLQLNHNRLHTLAEGTFAPLTALSHLQI 177

Query: 71  EDNPLVCTCDLMWYKEWSTSLGEKEDEQ 98
            DNP  CTC ++W+K W+ +      EQ
Sbjct: 178 NDNPFDCTCGIVWFKTWALTTAVSIPEQ 205

Bos taurus (taxid: 9913)

>sp|Q91044|NTRK3_CHICK NT-3 growth factor receptor OS=Gallus gallus GN=NTRK3 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 14/136 (10%)

Query: 25  LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG-------LEDNPLVC 77
           L  L + ++ LR I PR FA  P L  ++L GN + T+    F         LE NP  C
Sbjct: 105 LQRLTIRNSGLRNIQPRAFAKNPHLRYIDLSGNRLTTLSWQLFQTLRLFDLRLERNPFNC 164

Query: 78  TCDLMWYKEWSTSLGEKEDEQMSRKRTVC-TLGSSNVHQREIKLS--DLPKQLVCEGEKG 134
           +CD+ W + W     EK +  +  ++  C  L ++ +  R + ++  DLP+  V      
Sbjct: 165 SCDIRWIQLWQ----EKGEANLQSQQLHCMNLDTAVILLRNMNITQCDLPEISVSHVNLT 220

Query: 135 GRRSPNSAPSASLSGS 150
            R   N+  + + SGS
Sbjct: 221 VREGENAVITCNGSGS 236

Receptor for neurotrophin-3 (NT-3). This is a tyrosine-protein kinase receptor. Known substrates for the trk receptors are SHC1, PI-3 kinase and PLCG1. The KT and KD isoforms fail to stimulate transformation, process outgrowth or survival. Isoform KI25 exhibits tyrosine phosphorylation in the absence of ligand and is unable to mediate survival of neuronal cells.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q5NVQ6|ISLR_PONAB Immunoglobulin superfamily containing leucine-rich repeat protein OS=Pongo abelii GN=ISLR PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 22  LHNLDSLVLAH---NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL-------- 70
           LHNL +L L     N+L  IP   F  L  L SL+L+ N +HT+    F+ L        
Sbjct: 118 LHNLSALQLLKMDSNELTFIPRDAFRSLHALRSLQLNHNRLHTLAEGTFTPLTALSHLQI 177

Query: 71  EDNPLVCTCDLMWYKEWSTSLGEKEDEQ 98
            DNP  CTC ++W K W+ +      EQ
Sbjct: 178 NDNPFDCTCGIVWLKTWALATAVSIPEQ 205

Pongo abelii (taxid: 9601)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED----- 72
           T   + +L +L+L++N+LR IP   F  L  L  L L GN I +V   +F+ L       
Sbjct: 794 TFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLA 853

Query: 73  ---NPLVCTCDLMWYKEWSTSLGEKE 95
              NPL C C L W  EW  + G KE
Sbjct: 854 LGTNPLHCDCSLRWLSEWVKA-GYKE 878

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|Q9Z1P4|LGR5_MOUSE Leucine-rich repeat-containing G-protein coupled receptor 5 OS=Mus musculus GN=Lgr5 PE=2 SV=2

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           + + G  L+ I +   T  GLH+L  L+L +NQLR +P     +L  L SL LD NHI  
Sbjct: 95  LRLAGNALTHIPKGAFT--GLHSLKVLMLQNNQLRQVPEEALQNLRSLQSLRLDANHISY 152

Query: 62  VDPAAFSGLE 71
           V P+ FSGL 
Sbjct: 153 VPPSCFSGLH 162

Orphan receptor. Stem cell marker of the intestinal epithelium and the hair follicule. Target gene of Wnt signaling.

Mus musculus (taxid: 10090)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED----- 72
           T   + +L +L+L++N+LR IP   F  L  L  L L GN I +V   +F+ L       
Sbjct: 794 TFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLA 853

Query: 73  ---NPLVCTCDLMWYKEWSTSLGEKE 95
              NPL C C L W  EW  + G KE
Sbjct: 854 LGTNPLHCDCSLRWLSEWVKA-GYKE 878

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED----- 72
           T   + +L +L+L++N+LR IP   F  L  L  L L GN I +V   +F+ L       
Sbjct: 794 TFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFNDLTSLSHLA 853

Query: 73  ---NPLVCTCDLMWYKEWSTSLGEKE 95
              NPL C C L W  EW  + G KE
Sbjct: 854 LGINPLHCDCSLRWLSEWIKA-GYKE 878

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
48097668	484	PREDICTED: slit homolog 1 protein-like [	0.933	0.320	0.329	4e-16
350403510	484	PREDICTED: slit homolog 1 protein-like [	0.891	0.305	0.325	1e-15
340722936	484	PREDICTED: slit homolog 1 protein-like [	0.891	0.305	0.325	1e-15
307174510	487	Leucine-rich repeats and immunoglobulin-	0.903	0.308	0.317	4e-15
307203547	488	Leucine-rich repeats and immunoglobulin-	0.891	0.303	0.335	6e-15
270013642	479	hypothetical protein TcasGA2_TC012268 [T	0.421	0.146	0.583	2e-14
91089843	468	PREDICTED: similar to slit protein [Trib	0.421	0.149	0.583	2e-14
332020020	495	Leucine-rich repeats and immunoglobulin-	0.777	0.260	0.323	4e-13
383863394	484	PREDICTED: slit homolog 1 protein-like [	0.867	0.297	0.320	2e-12
193643421	490	PREDICTED: slit homolog 3 protein-like i	0.421	0.142	0.555	2e-12

>gi|48097668|ref|XP_393853.1| PREDICTED: slit homolog 1 protein-like [Apis mellifera]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 3   EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI--- 59
           ++    +SS+ E   T  G  ++  L L  N ++ +PP VF +L  L +L L  N I   
Sbjct: 320 DLKANNISSLSEDAFTGYG-DSITFLNLQKNLIKILPPVVFENLNSLETLNLQNNKIAHI 378

Query: 60  ------HTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNV 113
                 + VD      + DNPL+C C+L WY  W  +L +K+DE+MSRK TVCT+ S N 
Sbjct: 379 SEEVTENIVDTLRHIDITDNPLICDCELRWYSTWLGNLRDKDDERMSRKHTVCTMSSEN- 437

Query: 114 HQREIKLSDLP-KQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLV 162
             RE  + ++P +++ C G+  GR S + A     + + + LL+ A  ++
Sbjct: 438 --REYSVQNIPLERMGCVGKNAGRTS-SIATCHVYTDTMLRLLIVAVAML 484

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403510|ref|XP_003486822.1| PREDICTED: slit homolog 1 protein-like [Bombus impatiens]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 18/166 (10%)

Query: 11  SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN---HI------HT 61
           ++  + A +G   ++  L L  N ++ +PP VF +L  L +L L  N   HI      + 
Sbjct: 326 TVLPEDAFTGYGDSITFLNLQKNLIKVLPPLVFENLNSLETLSLQNNKLTHIQEEVTENI 385

Query: 62  VDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLS 121
           VD      + DNPL+C C+L WY  W  +L +K+DE+MSRKRTVCT+ +     RE  + 
Sbjct: 386 VDTLRHIDITDNPLICNCELRWYTAWLGNLRDKDDERMSRKRTVCTMPNE---HREYSVQ 442

Query: 122 DLP-KQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLVCIVF 166
           ++P +++ C GE  GR S     S    G +I +++  A +  +  
Sbjct: 443 NIPLERMGCVGENAGRTS-----STGSCGVYINMMLEIATVTVVAM 483

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722936|ref|XP_003399855.1| PREDICTED: slit homolog 1 protein-like [Bombus terrestris]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 18/166 (10%)

Query: 11  SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN---HI------HT 61
           ++  + A +G   ++  L L  N ++ +PP VF +L  L +L L  N   HI      + 
Sbjct: 326 TVLPEDAFTGYGDSITFLNLQKNLIKVLPPLVFENLNSLETLSLQNNKLTHIQEEVTENI 385

Query: 62  VDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLS 121
           VD      + DNPL+C C+L WY  W  +L +K+DE+MSRKRTVCT+ +     RE  + 
Sbjct: 386 VDTLRHIDITDNPLICNCELRWYTAWLGNLRDKDDERMSRKRTVCTMPNE---HREYSVQ 442

Query: 122 DLP-KQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLVCIVF 166
           ++P +++ C GE  GR S     S    G +I +++  A +  +  
Sbjct: 443 NIPLERMGCVGENAGRTS-----STGSCGVYIDMMLEIATVAVVAM 483

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174510|gb|EFN64972.1| Leucine-rich repeats and immunoglobulin-like domains protein 2 [Camponotus floridanus]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 6   GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH----- 60
              ++S+ E   T  G  ++  L L  N ++ +PP VF +L  L +L L  N +      
Sbjct: 326 ANNITSLPEDAFTGYG-DSITFLNLQKNMIKVLPPLVFDNLNSLETLNLQNNKLQHISEE 384

Query: 61  ----TVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQR 116
                VD      + DNPL+C CDL WY  W  +L +K+DE MS+KRT+CT+ S     R
Sbjct: 385 VTESIVDTLRHIDITDNPLICDCDLRWYSIWLGNLRDKDDEMMSKKRTICTMISE---HR 441

Query: 117 EIKLSDLP-KQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAA 159
           E  + ++P +++ C G+  G+ S +S    +   +   LL+ A 
Sbjct: 442 EYSVQNIPLERMGCTGKNAGKYSSSSTGCKTYVDALPMLLLVAV 485

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203547|gb|EFN82580.1| Leucine-rich repeats and immunoglobulin-like domains protein 2 [Harpegnathos saltator]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 13/161 (8%)

Query: 11  SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN---HI------HT 61
           +I  + A +G   ++  L L  N ++ +PP VF +L  L +L L  N   HI      + 
Sbjct: 330 TILPEDAFTGYGDSITFLNLQKNLIKVLPPLVFENLNSLETLSLQNNKLTHISEEVTENI 389

Query: 62  VDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLS 121
           VD      + DNPL+C C+L WY  W  +L +K+DE MS+KRTVC + +     RE  + 
Sbjct: 390 VDTLRHIDITDNPLICNCELRWYSVWLGNLRDKDDEMMSKKRTVCMMATE---HREYSVQ 446

Query: 122 DLP-KQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADL 161
           ++P +++ C G+  GR S  S        + + L+V AA L
Sbjct: 447 NIPLERMGCVGKNAGRISSASVACKVYVDATLPLIVIAAVL 487

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013642|gb|EFA10090.1| hypothetical protein TcasGA2_TC012268 [Tribolium castaneum]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 54/72 (75%), Gaps = 2/72 (2%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           +E+   +L+ I  K     GL NLDSL LAHN+LR +P RVF+HL +LNSLELDGN+I T
Sbjct: 215 LEMQENRLTEI--KEGDFEGLKNLDSLGLAHNKLRQVPSRVFSHLTVLNSLELDGNNIDT 272

Query: 62  VDPAAFSGLEDN 73
           +DP AF+GLE+N
Sbjct: 273 IDPEAFAGLEEN 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91089843|ref|XP_970465.1| PREDICTED: similar to slit protein [Tribolium castaneum]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 54/72 (75%), Gaps = 2/72 (2%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           +E+   +L+ I  K     GL NLDSL LAHN+LR +P RVF+HL +LNSLELDGN+I T
Sbjct: 204 LEMQENRLTEI--KEGDFEGLKNLDSLGLAHNKLRQVPSRVFSHLTVLNSLELDGNNIDT 261

Query: 62  VDPAAFSGLEDN 73
           +DP AF+GLE+N
Sbjct: 262 IDPEAFAGLEEN 273

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020020|gb|EGI60471.1| Leucine-rich repeats and immunoglobulin-like domains protein 2 [Acromyrmex echinatior]

 Score = 79.7 bits (195), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 13/142 (9%)

Query: 11  SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---------HT 61
           ++  + A +G   ++  L L  N ++ +PP VF +L  L +L L  N +         + 
Sbjct: 330 TVLPEDAFTGYGDSITFLNLQKNMIKILPPLVFENLNSLETLSLQNNRLTHIPEEVTENI 389

Query: 62  VDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLS 121
           VD      + DNPL+C C+L WY  W  +L +K+DE MS+KRTVC + S     RE  + 
Sbjct: 390 VDTLRHIDMTDNPLICDCELRWYSVWLGNLRDKDDEMMSKKRTVCMMVSE---HREYSVQ 446

Query: 122 DLP-KQLVCEGEKGGRRSPNSA 142
            +P  ++ C G+  G+ S ++A
Sbjct: 447 SIPLDRMGCVGKNAGKFSSSAA 468

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863394|ref|XP_003707166.1| PREDICTED: slit homolog 1 protein-like [Megachile rotundata]

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 83/159 (52%), Gaps = 15/159 (9%)

Query: 11  SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---------HT 61
           ++  + A +G   ++  L L  N ++ + P VF +L  L +L L  N +         + 
Sbjct: 327 TVLPEDAFTGYGDSITFLNLQKNLIKVLLPLVFENLNSLETLNLQNNKLTQIPEEVVENI 386

Query: 62  VDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLS 121
           VD      + DNPL+C C+L WY  W  +L  K+DE+++RKRTVC + +     RE  + 
Sbjct: 387 VDTLRDIDITDNPLICDCELRWYSVWLGNLRNKDDERIARKRTVCMMAN---EHREYSVQ 443

Query: 122 DLP-KQLVCEGEKGGRRSPNSAPSASLSGSFIALLVAAA 159
           +LP +++ C G+  GR S  SA S+ +    I  L+A A
Sbjct: 444 NLPLERMGCVGKNAGRTS--SAGSSRIFVDAILQLLAVA 480

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193643421|ref|XP_001943456.1| PREDICTED: slit homolog 3 protein-like isoform 1 [Acyrthosiphon pisum] gi|328701463|ref|XP_003241608.1| PREDICTED: slit homolog 3 protein-like isoform 2 [Acyrthosiphon pisum]

 Score = 77.0 bits (188), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           +EI   +++SI E      GL  LD L+LAHN L+ IP +VF HLPLLNSLELDGN I +
Sbjct: 226 LEIQENKITSISE--GDFIGLQTLDMLILAHNYLKHIPAKVFRHLPLLNSLELDGNQISS 283

Query: 62  VDPAAFSGLEDN 73
           +D  AF GLE+N
Sbjct: 284 IDEEAFFGLEEN 295

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
FB|FBgn0033250	470	CG14762 [Drosophila melanogast	0.421	0.148	0.513	6.9e-13
UNIPROTKB|Q7L0X0	811	TRIL "TLR4 interactor with leu	0.421	0.086	0.385	9.9e-09
UNIPROTKB|J9NZ68	1337	SLIT2 "Uncharacterized protein	0.728	0.090	0.294	2.9e-08
UNIPROTKB|F1P8A1	1530	SLIT2 "Uncharacterized protein	0.728	0.079	0.294	3.4e-08
MGI|MGI:1349645	428	Islr "immunoglobulin superfami	0.795	0.308	0.306	5.7e-08
MGI|MGI:1315205	1521	Slit2 "slit homolog 2 (Drosoph	0.728	0.079	0.287	7e-08
UNIPROTKB|O94813	1529	SLIT2 "Slit homolog 2 protein"	0.728	0.079	0.287	7.1e-08
UNIPROTKB|F1S5C4	1045	SLIT2 "Uncharacterized protein	0.728	0.115	0.280	7.4e-08
UNIPROTKB|F1MLJ7	1532	SLIT2 "Uncharacterized protein	0.728	0.078	0.287	9e-08
UNIPROTKB|O14498	428	ISLR "Immunoglobulin superfami	0.795	0.308	0.313	1.2e-07

FB|FBgn0033250 CG14762 [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 6.9e-13, P = 6.9e-13
 Identities = 37/72 (51%), Positives = 49/72 (68%)

Query:     2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
             +EI   ++ +I E      GL +LDSL+LAHN + T+P  VF+HL LLNSLEL+GN I  
Sbjct:   231 LEIQENKIRTISE--GDFEGLQSLDSLILAHNMITTVPANVFSHLTLLNSLELEGNKISV 288

Query:    62 VDPAAFSGLEDN 73
             +D  AF GLE+N
Sbjct:   289 IDKDAFKGLEEN 300

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|Q7L0X0 TRIL "TLR4 interactor with leucine rich repeats" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 9.9e-09, Sum P(2) = 9.9e-09
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query:     2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
             + +   +L       AT   L +L SL+L+ N L+ + PR+F HLP L  L L GN +  
Sbjct:   208 LNLSANELQPSLRHAATFAPLRSLSSLILSANNLQHLGPRIFQHLPRLGLLSLRGNQLTH 267

Query:    62 VDPAAFSGLE 71
             + P AF GLE
Sbjct:   268 LAPEAFWGLE 277

GO:0006954 "inflammatory response" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

GO:0002718 "regulation of cytokine production involved in immune response" evidence=IDA

GO:0001530 "lipopolysaccharide binding" evidence=IDA

GO:0046696 "lipopolysaccharide receptor complex" evidence=IDA

GO:0034142 "toll-like receptor 4 signaling pathway" evidence=IDA

UNIPROTKB|J9NZ68 SLIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 41/139 (29%), Positives = 69/139 (49%)

Query:     1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
             +I++   ++S++  +  +   +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct:   588 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 645

Query:    61 TVDPAAFSGLED--------NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
              V   AFS L          NPL C C++ W  +W  S  E ++  ++R    C  G   
Sbjct:   646 VVPEGAFSDLSALSHLAIGANPLYCDCNMQWLSDWVKS--EYKEPGIAR----CA-GPGE 698

Query:   113 VHQREIKLSDLPKQLVCEG 131
             +  + + L+   K+  C+G
Sbjct:   699 MADK-LLLTTPSKKFTCQG 716

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1P8A1 SLIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 141 (54.7 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 41/139 (29%), Positives = 69/139 (49%)

Query:     1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
             +I++   ++S++  +  +   +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct:   781 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 838

Query:    61 TVDPAAFSGLED--------NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
              V   AFS L          NPL C C++ W  +W  S  E ++  ++R    C  G   
Sbjct:   839 VVPEGAFSDLSALSHLAIGANPLYCDCNMQWLSDWVKS--EYKEPGIAR----CA-GPGE 891

Query:   113 VHQREIKLSDLPKQLVCEG 131
             +  + + L+   K+  C+G
Sbjct:   892 MADK-LLLTTPSKKFTCQG 909

GO:0005576 "extracellular region" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:1349645 Islr "immunoglobulin superfamily containing leucine-rich repeat" [Mus musculus (taxid:10090)]

 Score = 132 (51.5 bits), Expect = 5.7e-08, P = 5.7e-08
 Identities = 46/150 (30%), Positives = 63/150 (42%)

Query:    22 LHNLDSLVLAH---NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL-------- 70
             LHNL +L L     N+L  IP   F+ L  L SL+L+ N +H +    F+ L        
Sbjct:   118 LHNLSALQLLKMDSNELAFIPRDAFSSLSALRSLQLNHNRLHALAEGTFAPLTALSHLQI 177

Query:    71 EDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE 130
              DNP  CTC ++W+K W+ +      EQ       CT  + +V  + I L  LP  L C 
Sbjct:   178 NDNPFDCTCGIVWFKTWALASAVSIPEQ---DNIACT--TPHV-LKGIPLGRLPP-LPCS 230

Query:   131 GEKGGRRSPNSAPSASLSGSFIALLVAAAD 160
                       S   A L   F+  L    D
Sbjct:   231 APSVQLSYQPSQDGAELRPGFVLALHCDVD 260

GO:0005576 "extracellular region" evidence=IEA

MGI|MGI:1315205 Slit2 "slit homolog 2 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 40/139 (28%), Positives = 69/139 (49%)

Query:     1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
             +I++   ++S++  +  +   +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct:   773 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 830

Query:    61 TVDPAAFSGLED--------NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
              V   AF+ L          NPL C C++ W  +W  S  E ++  ++R    C  G   
Sbjct:   831 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS--EYKEPGIAR----CA-GPGE 883

Query:   113 VHQREIKLSDLPKQLVCEG 131
             +  + + L+   K+  C+G
Sbjct:   884 MADK-LLLTTPSKKFTCQG 901

GO:0001656 "metanephros development" evidence=IMP

GO:0001657 "ureteric bud development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=ISO

GO:0005095 "GTPase inhibitor activity" evidence=ISO

GO:0005102 "receptor binding" evidence=TAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006935 "chemotaxis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP;IDA

GO:0007411 "axon guidance" evidence=ISO;IGI;IMP;IDA

GO:0008045 "motor neuron axon guidance" evidence=ISO

GO:0008201 "heparin binding" evidence=ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0009986 "cell surface" evidence=ISO

GO:0010593 "negative regulation of lamellipodium assembly" evidence=ISO

GO:0010596 "negative regulation of endothelial cell migration" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=IGI

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=IGI;IMP

GO:0021772 "olfactory bulb development" evidence=IGI

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=ISO

GO:0022029 "telencephalon cell migration" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030837 "negative regulation of actin filament polymerization" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO;IGI;IMP

GO:0033563 "dorsal/ventral axon guidance" evidence=IGI;IMP

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

GO:0043116 "negative regulation of vascular permeability" evidence=ISO

GO:0043237 "laminin-1 binding" evidence=ISO

GO:0043394 "proteoglycan binding" evidence=ISO

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISO

GO:0045499 "chemorepellent activity" evidence=IMP

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=IGI;IMP

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=ISO

GO:0050919 "negative chemotaxis" evidence=ISO;IMP

GO:0050929 "induction of negative chemotaxis" evidence=ISO

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI;IMP

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

GO:0071504 "cellular response to heparin" evidence=ISO

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=ISO

GO:0071676 "negative regulation of mononuclear cell migration" evidence=ISO

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=ISO

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISO

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=ISO

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

UNIPROTKB|O94813 SLIT2 "Slit homolog 2 protein" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 40/139 (28%), Positives = 69/139 (49%)

Query:     1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
             +I++   ++S++  +  +   +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct:   781 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 838

Query:    61 TVDPAAFSGLED--------NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
              V   AF+ L          NPL C C++ W  +W  S  E ++  ++R    C  G   
Sbjct:   839 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS--EYKEPGIAR----CA-GPGE 891

Query:   113 VHQREIKLSDLPKQLVCEG 131
             +  + + L+   K+  C+G
Sbjct:   892 MADK-LLLTTPSKKFTCQG 909

GO:0001656 "metanephros development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IMP

GO:0050929 "induction of negative chemotaxis" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0048495 "Roundabout binding" evidence=IPI

GO:0043237 "laminin-1 binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0050919 "negative chemotaxis" evidence=IDA;IMP

GO:0030336 "negative regulation of cell migration" evidence=IMP;IDA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IDA;IMP

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IDA

GO:0005095 "GTPase inhibitor activity" evidence=IDA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IDA

GO:0016020 "membrane" evidence=NAS

GO:0010596 "negative regulation of endothelial cell migration" evidence=IDA

GO:0043116 "negative regulation of vascular permeability" evidence=IDA

GO:0005509 "calcium ion binding" evidence=NAS

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IDA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IDA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IDA

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=IDA

GO:0043394 "proteoglycan binding" evidence=IPI

GO:0048846 "axon extension involved in axon guidance" evidence=IDA

GO:0071504 "cellular response to heparin" evidence=IDA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IDA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=IEP

GO:0051414 "response to cortisol stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0008045 "motor neuron axon guidance" evidence=IDA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IDA

GO:0008201 "heparin binding" evidence=IDA

GO:0007411 "axon guidance" evidence=IDA;TAS

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=IDA

GO:0005576 "extracellular region" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0035385 "Roundabout signaling pathway" evidence=IC;IMP

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IMP

GO:0030308 "negative regulation of cell growth" evidence=IMP

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IDA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IMP

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IDA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IDA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IMP

UNIPROTKB|F1S5C4 SLIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 136 (52.9 bits), Expect = 7.4e-08, P = 7.4e-08
 Identities = 39/139 (28%), Positives = 69/139 (49%)

Query:     1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
             +I++   ++S++  +  +   +  L +L+L++N+LR +PPR F  L  L  L L GN I 
Sbjct:   294 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCLPPRTFDGLKSLRLLSLHGNDIS 351

Query:    61 TVDPAAFSGLED--------NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
              V   AF+ L          NPL C C++ W  +W  S  E ++  ++R    C  G   
Sbjct:   352 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS--EYKEPGIAR----CA-GPGE 404

Query:   113 VHQREIKLSDLPKQLVCEG 131
             +  + + L+   K+  C+G
Sbjct:   405 MADK-LLLTTPSKKFTCQG 422

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IEA

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IEA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IEA

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IEA

GO:0071504 "cellular response to heparin" evidence=IEA

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0050929 "induction of negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0043394 "proteoglycan binding" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0010596 "negative regulation of endothelial cell migration" evidence=IEA

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1MLJ7 SLIT2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 40/139 (28%), Positives = 69/139 (49%)

Query:     1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
             +I++   ++S++  +  +   +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct:   783 LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 840

Query:    61 TVDPAAFSGLED--------NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
              V   AF+ L          NPL C C++ W  +W  S  E ++  ++R    C  G   
Sbjct:   841 VVPEGAFNDLAALSHLAIGANPLYCDCNMQWLSDWVKS--EYKEPGIAR----CA-GPGE 893

Query:   113 VHQREIKLSDLPKQLVCEG 131
             +  + + L+   K+  C+G
Sbjct:   894 MADK-LLLTTPSKKFTCQG 911

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=IEA

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=IEA

GO:0071676 "negative regulation of mononuclear cell migration" evidence=IEA

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=IEA

GO:0071504 "cellular response to heparin" evidence=IEA

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=IEA

GO:0061364 "apoptotic process involved in luteolysis" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0050929 "induction of negative chemotaxis" evidence=IEA

GO:0048846 "axon extension involved in axon guidance" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0048495 "Roundabout binding" evidence=IEA

GO:0045499 "chemorepellent activity" evidence=IEA

GO:0043394 "proteoglycan binding" evidence=IEA

GO:0043237 "laminin-1 binding" evidence=IEA

GO:0043116 "negative regulation of vascular permeability" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033563 "dorsal/ventral axon guidance" evidence=IEA

GO:0032870 "cellular response to hormone stimulus" evidence=IEA

GO:0031290 "retinal ganglion cell axon guidance" evidence=IEA

GO:0030837 "negative regulation of actin filament polymerization" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=IEA

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0010596 "negative regulation of endothelial cell migration" evidence=IEA

GO:0010593 "negative regulation of lamellipodium assembly" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0008045 "motor neuron axon guidance" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=IEA

GO:0001933 "negative regulation of protein phosphorylation" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001657 "ureteric bud development" evidence=IEA

GO:0001656 "metanephros development" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|O14498 ISLR "Immunoglobulin superfamily containing leucine-rich repeat protein" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 47/150 (31%), Positives = 62/150 (41%)

Query:    22 LHNLDSLVLAH---NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL-------- 70
             LHNL +L L     N+L  IP   F  L  L SL+L+ N +HT+    F+ L        
Sbjct:   118 LHNLSALQLLKMDSNELTFIPRDAFRSLRALRSLQLNHNRLHTLAEGTFTPLTALSHLQI 177

Query:    71 EDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE 130
              +NP  CTC ++W K W+ +      EQ       CT  S +V  +   LS LP  L C 
Sbjct:   178 NENPFDCTCGIVWLKTWALTTAVSIPEQ---DNIACT--SPHV-LKGTPLSRLPP-LPCS 230

Query:   131 GEKGGRRSPNSAPSASLSGSFIALLVAAAD 160
                       S   A L   F+  L    D
Sbjct:   231 APSVQLSYQPSQDGAELRPGFVLALHCDVD 260

GO:0005576 "extracellular region" evidence=IEA

GO:0007155 "cell adhesion" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	166
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-10
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	1e-04
smart00370	24	smart00370, LRR, Leucine-rich repeats, outliers	0.001
smart00369	24	smart00369, LRR_TYP, Leucine-rich repeats, typical	0.001

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 52.2 bits (126), Expect = 5e-10
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          NL SL L++N+L  IP   F  LP L  L+L GN++ ++ P AFSGL
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL 47

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.7 bits (117), Expect = 1e-08
 Identities = 19/40 (47%), Positives = 25/40 (62%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
           GL NL  L L+ N L +I P  F+ LP L SL+L GN++
Sbjct: 21 KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
           NL++L L++NQ+  +PP   ++LP L +L+L GN I  + P
Sbjct: 1  TNLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers

 Score = 34.2 bits (80), Expect = 0.001
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAH 45
          L NL  L L++NQL ++PP  F  
Sbjct: 1  LPNLRELDLSNNQLSSLPPGAFQG 24

Length = 24

>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated) subfamily

 Score = 34.2 bits (80), Expect = 0.001
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAH 45
          L NL  L L++NQL ++PP  F  
Sbjct: 1  LPNLRELDLSNNQLSSLPPGAFQG 24

Length = 24

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
KOG4237|consensus	498		99.84
KOG4194|consensus	873		99.71
KOG4237|consensus	498		99.56
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.35
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	99.24
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.94
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	98.75
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.73
PLN03150	623	hypothetical protein; Provisional	98.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.59
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.59
KOG4194|consensus	873		98.57
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.52
PLN03150	623	hypothetical protein; Provisional	98.5
KOG0444|consensus	1255		98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.09
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.05
KOG0617|consensus	264		97.99
KOG0617|consensus	264		97.96
KOG0444|consensus	1255		97.94
KOG1259|consensus	490		97.78
KOG1644|consensus	233		97.75
KOG0618|consensus	1081		97.59
KOG0472|consensus	565		97.55
KOG0618|consensus	1081		97.54
KOG0472|consensus	565		97.5
KOG1859|consensus	1096		97.43
KOG4579|consensus	177		97.29
KOG1259|consensus	490		97.14
KOG4579|consensus	177		97.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	97.12
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.11
smart00370	26	LRR Leucine-rich repeats, outliers.	97.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	97.09
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.94
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.93
KOG0531|consensus	414		96.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.85
smart00370	26	LRR Leucine-rich repeats, outliers.	96.8
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	96.8
KOG0531|consensus	414		96.43
KOG1644|consensus	233		96.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.36
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.06
KOG1859|consensus	1096		96.01
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.94
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.7
KOG0532|consensus	722		95.37
KOG0532|consensus	722		94.93
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	94.35
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	94.22
KOG2739|consensus	260		94.14
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	93.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	93.77
KOG2123|consensus	388		93.71
KOG4658|consensus	889		93.37
KOG4658|consensus	889		93.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	92.93
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	92.68
KOG2123|consensus	388		91.83
KOG3207|consensus	505		91.63
KOG0473|consensus	326		90.98
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.9
KOG3207|consensus	505		90.05
KOG0473|consensus	326		88.69
KOG2982|consensus	418		88.69
KOG2739|consensus	260		88.66
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	85.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.84
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.53
KOG3763|consensus	585		81.72
PRK15386	426	type III secretion protein GogB; Provisional	81.55

>KOG4237|consensus

Probab=99.84  E-value=1.8e-21  Score=149.33  Aligned_cols=124  Identities=28%  Similarity=0.483  Sum_probs=112.6

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------C
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D   72 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~   72 (166)
                      .|+|++|+|+.+.++  +|.++..+++|+|..|+|..+...+|.++..|+.|+|.+|+|+.+.+.+|+.+.        .
T Consensus       278 ~lnlsnN~i~~i~~~--aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  278 KLNLSNNKITRIEDG--AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             EeccCCCccchhhhh--hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            378999999999999  999999999999999999999999999999999999999999999999999988        8


Q ss_pred             CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCCCC
Q psy10386         73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKGGR  136 (166)
Q Consensus        73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~~~  136 (166)
                      |||.|+|.+.|+.+|+++...       .....|..|..   +++.+++++.. ++.|..+....
T Consensus       356 Np~~CnC~l~wl~~Wlr~~~~-------~~~~~Cq~p~~---~~~~~~~dv~~~~~~c~~~ee~~  410 (498)
T KOG4237|consen  356 NPFNCNCRLAWLGEWLRKKSV-------VGNPRCQSPGF---VRQIPISDVAFGDFRCGGPEELG  410 (498)
T ss_pred             CcccCccchHHHHHHHhhCCC-------CCCCCCCCCch---hccccchhccccccccCCccccC
Confidence            999999999999999998651       35589999999   99999999987 77887554433

>KOG4194|consensus

Probab=99.71  E-value=6.9e-18  Score=135.41  Aligned_cols=123  Identities=27%  Similarity=0.550  Sum_probs=105.1

Q ss_pred             CEEecCCCCceee-CCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------C
Q psy10386          1 MIEIWGGQLSSIF-EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------D   72 (166)
Q Consensus         1 ~L~ls~N~l~~~~-~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~   72 (166)
                      .|||++|.|++.. +..+.|.||++|+.|++.+|+|+.|+..+|.++.+|++|||.+|.|.+|.+++|+.+.       .
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS  448 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNS  448 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcc
Confidence            3788888888753 2222688999999999999999999999999999999999999999999999999887       5


Q ss_pred             CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCC
Q psy10386         73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEG  131 (166)
Q Consensus        73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~  131 (166)
                      -.+.|||.+.|+..|+.....+.     .-...|+.|..   +.|+.+..++. ++.|.+
T Consensus       449 ssflCDCql~Wl~qWl~~~~lq~-----sv~a~CayPe~---Lad~~i~svd~~~lvC~D  500 (873)
T KOG4194|consen  449 SSFLCDCQLKWLAQWLYRRKLQS-----SVIAKCAYPEP---LADQSIVSVDTANLVCDD  500 (873)
T ss_pred             cceEEeccHHHHHHHHHhccccc-----ceeeeccCCcc---cccceeEeechhhceecC
Confidence            67899999999999999865442     23489999999   99999999999 899974

>KOG4237|consensus

Probab=99.56  E-value=2.2e-16  Score=121.62  Aligned_cols=118  Identities=29%  Similarity=0.438  Sum_probs=98.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccC-CcccccCccccCCCC---------
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGLE---------   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~-N~l~~~~~~~~~~l~---------   71 (166)
                      ++|..|+|+.+|++  +|+.+++|+.||||+|+|+.|.+++|++++++..|-+-+ |+|+.++.++|.++.         
T Consensus        72 irLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa  149 (498)
T KOG4237|consen   72 IRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA  149 (498)
T ss_pred             EEeccCCcccCChh--hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence            68999999999999  999999999999999999999999999999887765555 999999999999998         


Q ss_pred             -----------------------------------------------CCCccccCCcHHHHHHHHhccCCcchhcccCCc
Q psy10386         72 -----------------------------------------------DNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRT  104 (166)
Q Consensus        72 -----------------------------------------------~Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~  104 (166)
                                                                     .||+.|+|.+.|+.+.+..+.-.      -.-.
T Consensus       150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie------tsga  223 (498)
T KOG4237|consen  150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE------TSGA  223 (498)
T ss_pred             hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh------cccc
Confidence                                                           79999999999999987764322      2336


Q ss_pred             eecCCCCCCcccCccccCCCC-cccCC
Q psy10386        105 VCTLGSSNVHQREIKLSDLPK-QLVCE  130 (166)
Q Consensus       105 ~C~~p~~~~~~~~~~l~~~~~-~~~C~  130 (166)
                      .|..|..   +....+..++. .+.|.
T Consensus       224 rc~~p~r---l~~~Ri~q~~a~kf~c~  247 (498)
T KOG4237|consen  224 RCVSPYR---LYYKRINQEDARKFLCS  247 (498)
T ss_pred             eecchHH---HHHHHhcccchhhhhhh
Confidence            7777766   66666666655 44443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.35  E-value=8.4e-13  Score=77.69  Aligned_cols=57  Identities=33%  Similarity=0.598  Sum_probs=54.6

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI   59 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l   59 (166)
                      .|++++|+++.++++  .|.++++|+.|++++|+++.+++++|.++++|+++++++|+|
T Consensus         5 ~L~l~~n~l~~i~~~--~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    5 SLDLSNNKLTEIPPD--SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             EEEETSSTESEECTT--TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             EEECCCCCCCccCHH--HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            378999999999999  999999999999999999999999999999999999999986

...

>TIGR00864 PCC polycystin cation channel protein

Probab=99.24  E-value=8.6e-12  Score=114.03  Aligned_cols=84  Identities=24%  Similarity=0.436  Sum_probs=71.8

Q ss_pred             eccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCCCCCccccCCcHHHHHHHHhccCCcchhcccCCceecC
Q psy10386         29 VLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTL  108 (166)
Q Consensus        29 ~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~~Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~  108 (166)
                      ||++|+|+.++++.|..+++|+.|+|+                +|||+|||++.||..|++.....   +.....+.|..
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLs----------------gNPw~CDC~L~WL~~WL~~~~v~---v~~~~~i~Cas   61 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLS----------------GNPFECDCGLARLPRWAEEKGVK---VRQPEAALCAG   61 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEee----------------CCccccccccHHHHHHHHhcCcc---ccCCcccCCCC
Confidence            689999999999999999999999997                78999999999999999985432   22345789999


Q ss_pred             CCCCCcccCccccCCCC-cccCCCCCC
Q psy10386        109 GSSNVHQREIKLSDLPK-QLVCEGEKG  134 (166)
Q Consensus       109 p~~~~~~~~~~l~~~~~-~~~C~~~~~  134 (166)
                      |..   ++|+++.+++. ++.|..+..
T Consensus        62 P~~---LrG~~L~~l~~~d~~C~~~y~   85 (2740)
T TIGR00864        62 PGA---LAGQPLLGIPLLDSGCDEEYV   85 (2740)
T ss_pred             ChH---HCCCCcccCCcccCCCCCcce
Confidence            999   99999999987 778876553

Note: this model has been restricted to the amino half because for technical reasons.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.94  E-value=7.6e-10  Score=64.93  Aligned_cols=49  Identities=45%  Similarity=0.789  Sum_probs=46.7

Q ss_pred             ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      ++|+.|++++|+++.+++++|.++++|++|++++|.++.+++++|.+++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~   49 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP   49 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC
Confidence            5789999999999999999999999999999999999999999999876

...

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=98.75  E-value=5.4e-09  Score=58.99  Aligned_cols=49  Identities=29%  Similarity=0.613  Sum_probs=37.0

Q ss_pred             CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccC
Q psy10386         73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVC  129 (166)
Q Consensus        73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C  129 (166)
                      |||.|||++.||..|+++.. .   +.....+.|..|..   ++ .++.++.. ++.|
T Consensus         1 NP~~CdC~l~~~~~w~~~~~-~---~~~~~~~~C~~P~~---~~-~~l~~~~~~~~~C   50 (51)
T smart00082        1 NPFICDCELRWLLRWLQANE-H---LQDPVSLRCASPSS---LR-GPLLELLHSEFKC   50 (51)
T ss_pred             CCccCcCCchHHHHHHHhCC-c---cCCCCCCEeCCcHH---HH-hHHHcCCHhhCCC
Confidence            89999999999999998821 1   12245799999988   77 55777665 5566

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.73  E-value=2.3e-08  Score=87.57  Aligned_cols=68  Identities=28%  Similarity=0.371  Sum_probs=41.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|++++..+.  .|.++++|+.|++++|+++...|..|..+++|+.|++++|.+++..+..|..++
T Consensus       480 L~ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  547 (968)
T PLN00113        480 LDLSRNQFSGAVPR--KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP  547 (968)
T ss_pred             EECcCCccCCccCh--hhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcc
Confidence            55666666655555  566666666666666666655555566666666666666666655555555444

>PLN03150 hypothetical protein; Provisional

Probab=98.68  E-value=7.3e-08  Score=80.87  Aligned_cols=74  Identities=22%  Similarity=0.287  Sum_probs=61.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |+|++|.+++..+.  .+..+++|+.|+|++|+++...|..+..+++|+.|++++|++++..+..+..+.        +|
T Consensus       423 L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N  500 (623)
T PLN03150        423 LGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN  500 (623)
T ss_pred             EECCCCCccccCCH--HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC
Confidence            68899999987777  899999999999999999876676788999999999999999876666665554        66


Q ss_pred             Cccc
Q psy10386         74 PLVC   77 (166)
Q Consensus        74 p~~C   77 (166)
                      .+.+
T Consensus       501 ~l~g  504 (623)
T PLN03150        501 SLSG  504 (623)
T ss_pred             cccc
Confidence            6654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.59  E-value=1.9e-07  Score=81.89  Aligned_cols=76  Identities=28%  Similarity=0.392  Sum_probs=66.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|++++..|.  .|.++++|+.|++++|.++...+..|..+++|+.|++++|++.+..+..+..+.        +|
T Consensus       504 L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        504 LKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN  581 (968)
T ss_pred             EECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence            78999999988888  899999999999999999999898999999999999999999876666555544        78


Q ss_pred             CccccC
Q psy10386         74 PLVCTC   79 (166)
Q Consensus        74 p~~C~C   79 (166)
                      ++.+..
T Consensus       582 ~l~~~~  587 (968)
T PLN00113        582 HLHGSL  587 (968)
T ss_pred             cceeeC
Confidence            877644

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.59  E-value=5.9e-08  Score=53.05  Aligned_cols=41  Identities=39%  Similarity=0.756  Sum_probs=34.0

Q ss_pred             ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      ++|++|++++|+|+.+++. ++.+++|+.|++++|+++.+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCcC
Confidence            4789999999999999774 7899999999999999988754

...

>KOG4194|consensus

Probab=98.57  E-value=2.6e-08  Score=81.19  Aligned_cols=68  Identities=31%  Similarity=0.546  Sum_probs=36.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |+|++|+|+.+..+  .|.++.+|..|.|+.|+++.+|+..|+.+++|+.|+|..|+|.-+..-+|++++
T Consensus       178 L~La~N~It~l~~~--~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~  245 (873)
T KOG4194|consen  178 LNLASNRITTLETG--HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP  245 (873)
T ss_pred             Eeeccccccccccc--cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence            44555555555555  555555555555555555555555555555555555555555555444555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.52  E-value=8.8e-08  Score=67.86  Aligned_cols=59  Identities=25%  Similarity=0.410  Sum_probs=21.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.|+.+..    +.+++.|+.|++++|+|+.+.+.....+++|+.|++++|++..+..
T Consensus        47 L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~  105 (175)
T PF14580_consen   47 LDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE  105 (175)
T ss_dssp             EE-TTS--S--TT--------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred             EECCCCCCccccC----ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH
Confidence            5677777776652    4566777777777777777754433346677777777777765543

>PLN03150 hypothetical protein; Provisional

Probab=98.50  E-value=1.4e-07  Score=79.23  Aligned_cols=64  Identities=27%  Similarity=0.415  Sum_probs=56.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~   67 (166)
                      |+|++|.+++..|.  .+..+++|+.|+|++|+++...|..+..+++|+.|++++|++++..|..+
T Consensus       447 L~Ls~N~l~g~iP~--~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        447 INLSGNSIRGNIPP--SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             EECCCCcccCcCCh--HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence            78999999977777  79999999999999999998878889999999999999999986555444

>KOG0444|consensus

Probab=98.11  E-value=4.5e-07  Score=74.93  Aligned_cols=63  Identities=25%  Similarity=0.328  Sum_probs=43.3

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA   66 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~   66 (166)
                      +||||+|++++.|.+   +....++-.|+||+|+|.+||...|.++..|.+|||++|++..+||..
T Consensus       107 ~lDLShNqL~EvP~~---LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~  169 (1255)
T KOG0444|consen  107 ILDLSHNQLREVPTN---LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI  169 (1255)
T ss_pred             eeecchhhhhhcchh---hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence            366777777777664   455666667777777777777777777777777777777777776653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.09  E-value=2.1e-06  Score=46.81  Aligned_cols=37  Identities=24%  Similarity=0.448  Sum_probs=32.0

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP   40 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~   40 (166)
                      .|++++|+|+.+++   .+..+++|+.|++++|+++.+++
T Consensus         5 ~L~l~~N~i~~l~~---~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    5 ELDLSNNQITDLPP---ELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             EEEETSSS-SSHGG---HGTTCTTSSEEEETSSCCSBEGG
T ss_pred             EEEccCCCCcccCc---hHhCCCCCCEEEecCCCCCCCcC
Confidence            38999999999987   48899999999999999998754

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.05  E-value=3.1e-06  Score=60.04  Aligned_cols=59  Identities=29%  Similarity=0.506  Sum_probs=20.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      |+|.+|+|+.+..-   -..+.+|+.|++++|.|+.++.  +..++.|+.|++++|+|+++.+.
T Consensus        24 L~L~~n~I~~Ie~L---~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~   82 (175)
T PF14580_consen   24 LNLRGNQISTIENL---GATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEG   82 (175)
T ss_dssp             ------------S-----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHH
T ss_pred             ccccccccccccch---hhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccc
Confidence            78999999998743   1257899999999999999975  78899999999999999998753

>KOG0617|consensus

Probab=97.99  E-value=1.3e-06  Score=61.58  Aligned_cols=60  Identities=23%  Similarity=0.404  Sum_probs=45.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      |-+|+|+++.++|+   ...+.+|+.|++++|+++.+|.. .+.+++|++|++..|++..++.+
T Consensus        38 LtLSHNKl~~vppn---ia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprg   97 (264)
T KOG0617|consen   38 LTLSHNKLTVVPPN---IAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRG   97 (264)
T ss_pred             hhcccCceeecCCc---HHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccc
Confidence            56788888888886   45778888888888888888765 46777888888888877766553

>KOG0617|consensus

Probab=97.96  E-value=1.4e-06  Score=61.42  Aligned_cols=63  Identities=22%  Similarity=0.411  Sum_probs=53.6

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc--ccCcccc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPAAF   67 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~--~~~~~~~   67 (166)
                      +|++++|+|+.+|.   +.+.++.|+.|+++.|++..+|.+ |+.++.|+.||+..|.++  +++.+.|
T Consensus        60 vln~~nnqie~lp~---~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen   60 VLNLSNNQIEELPT---SISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             hhhcccchhhhcCh---hhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccccccccCCcchh
Confidence            47899999999998   477999999999999999988766 899999999999999985  3444433

>KOG0444|consensus

Probab=97.94  E-value=9.8e-07  Score=73.04  Aligned_cols=60  Identities=23%  Similarity=0.392  Sum_probs=54.5

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      +|+||+|+|..+|..  .|.++..|-.||||+|++..+||. .+.+..|+.|.|++|++....
T Consensus       130 VLNLS~N~IetIPn~--lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNS--LFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             EEEcccCccccCCch--HHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHH
Confidence            489999999999998  999999999999999999999998 468999999999999875543

>KOG1259|consensus

Probab=97.78  E-value=7.5e-06  Score=62.44  Aligned_cols=58  Identities=29%  Similarity=0.462  Sum_probs=50.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      +|||+|.|+.+..   +..-++.++.|++|+|.|..+..  ++.+++|+.|||++|.++.+..
T Consensus       289 lDLS~N~I~~iDE---SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G  346 (490)
T KOG1259|consen  289 LDLSGNLITQIDE---SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG  346 (490)
T ss_pred             ccccccchhhhhh---hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh
Confidence            7899999999886   45677899999999999999977  6789999999999999988754

>KOG1644|consensus

Probab=97.75  E-value=2e-05  Score=56.65  Aligned_cols=58  Identities=28%  Similarity=0.415  Sum_probs=50.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      +||++|.+..++    .|.+++.|.+|.+++|+|+.|.+..-.-+++|+.|.|.+|.|..+.
T Consensus        47 iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~  104 (233)
T KOG1644|consen   47 IDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG  104 (233)
T ss_pred             ecccccchhhcc----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence            688999988776    4789999999999999999999987767889999999999987653

>KOG0618|consensus

Probab=97.59  E-value=8.7e-06  Score=69.64  Aligned_cols=59  Identities=24%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             EecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          3 EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         3 ~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      .+.+|+++.-.-.  .+.+...|+.|+|++|+|+.+|...+..+..|+.|+|++|+|++++
T Consensus       365 ylanN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp  423 (1081)
T KOG0618|consen  365 YLANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP  423 (1081)
T ss_pred             HHhcCcccccchh--hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh
Confidence            3445555543322  4555555555555555555555555555555555555555555554

>KOG0472|consensus

Probab=97.55  E-value=3.2e-05  Score=61.02  Aligned_cols=52  Identities=35%  Similarity=0.539  Sum_probs=29.4

Q ss_pred             CCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386          6 GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus         6 ~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      +|++..+++.  -..++.+|.+|||.+|.++.+||. ++.+.+|++|++.+|+++
T Consensus       490 ~nqi~~vd~~--~l~nm~nL~tLDL~nNdlq~IPp~-LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  490 NNQIGSVDPS--GLKNMRNLTTLDLQNNDLQQIPPI-LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccccccChH--HhhhhhhcceeccCCCchhhCChh-hccccceeEEEecCCccC
Confidence            3555555554  455555556666666666655555 455555666666655555

>KOG0618|consensus

Probab=97.54  E-value=5.6e-06  Score=70.78  Aligned_cols=60  Identities=30%  Similarity=0.439  Sum_probs=50.4

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCcc---------------------ccCCCCCCCEEeccCCcc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPR---------------------VFAHLPLLNSLELDGNHI   59 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~---------------------~f~~l~~L~~l~l~~N~l   59 (166)
                      +|+|++|+++.+|..  .+.+++.|++|+||+|+++.++..                     .+..++.|+.+|++.|.|
T Consensus       387 VLhLsyNrL~~fpas--~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L  464 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPAS--KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNL  464 (1081)
T ss_pred             eeeecccccccCCHH--HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchh
Confidence            589999999999998  899999999999999999888643                     144577888888888888


Q ss_pred             ccc
Q psy10386         60 HTV   62 (166)
Q Consensus        60 ~~~   62 (166)
                      +.+
T Consensus       465 ~~~  467 (1081)
T KOG0618|consen  465 SEV  467 (1081)
T ss_pred             hhh
Confidence            653

>KOG0472|consensus

Probab=97.50  E-value=1.5e-05  Score=62.82  Aligned_cols=85  Identities=22%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP   74 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np   74 (166)
                      |+++.|+|..++..  ...+++++..|||.+|++++.|.+.. -+++|..||+++|.+++++.. +..+.       |||
T Consensus       233 lh~g~N~i~~lpae--~~~~L~~l~vLDLRdNklke~Pde~c-lLrsL~rLDlSNN~is~Lp~s-LgnlhL~~L~leGNP  308 (565)
T KOG0472|consen  233 LHVGENQIEMLPAE--HLKHLNSLLVLDLRDNKLKEVPDEIC-LLRSLERLDLSNNDISSLPYS-LGNLHLKFLALEGNP  308 (565)
T ss_pred             HHhcccHHHhhHHH--HhcccccceeeeccccccccCchHHH-HhhhhhhhcccCCccccCCcc-cccceeeehhhcCCc
Confidence            45566777777776  66677788888888888888877754 567788888888888877653 22222       888


Q ss_pred             cc------ccCCcHHHHHHHHh
Q psy10386         75 LV------CTCDLMWYKEWSTS   90 (166)
Q Consensus        75 ~~------C~C~l~~l~~~~~~   90 (166)
                      +.      -+|....+..++++
T Consensus       309 lrTiRr~ii~~gT~~vLKyLrs  330 (565)
T KOG0472|consen  309 LRTIRREIISKGTQEVLKYLRS  330 (565)
T ss_pred             hHHHHHHHHcccHHHHHHHHHH
Confidence            73      23555666666665

>KOG1859|consensus

Probab=97.43  E-value=3.2e-05  Score=65.11  Aligned_cols=56  Identities=23%  Similarity=0.296  Sum_probs=37.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      |+|++|+++.+.    .+..++.|++|||++|.++.++.-...+. +|+.|.+++|.++++
T Consensus       192 LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  192 LNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL  247 (1096)
T ss_pred             hccchhhhhhhH----HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh
Confidence            678888888776    35678888888888888887765322222 366666666655443

>KOG4579|consensus

Probab=97.29  E-value=2.6e-05  Score=53.05  Aligned_cols=60  Identities=23%  Similarity=0.318  Sum_probs=38.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      .+|++|.+...++.  .-...+.++.+++++|.|+.+|.. +..++.|+.++++.|++...+.
T Consensus        58 i~ls~N~fk~fp~k--ft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~  117 (177)
T KOG4579|consen   58 ISLSDNGFKKFPKK--FTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPR  117 (177)
T ss_pred             EecccchhhhCCHH--HhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchH
Confidence            35666766666664  333344666777777777777666 6666777777777777665544

>KOG1259|consensus

Probab=97.14  E-value=0.00013  Score=55.85  Aligned_cols=56  Identities=21%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      .|++|+|+|..+..    +..+++|+.||||+|.++.+.... ..+.+.+.|.|++|.+.+
T Consensus       311 ~L~lS~N~i~~v~n----La~L~~L~~LDLS~N~Ls~~~Gwh-~KLGNIKtL~La~N~iE~  366 (490)
T KOG1259|consen  311 RLILSQNRIRTVQN----LAELPQLQLLDLSGNLLAECVGWH-LKLGNIKTLKLAQNKIET  366 (490)
T ss_pred             EEeccccceeeehh----hhhcccceEeecccchhHhhhhhH-hhhcCEeeeehhhhhHhh
Confidence            37899999998875    457899999999999998876543 244455555555554433

>KOG4579|consensus

Probab=97.14  E-value=3.3e-05  Score=52.55  Aligned_cols=75  Identities=23%  Similarity=0.253  Sum_probs=62.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP   74 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np   74 (166)
                      |++++|.|+.+|.+   |..++.|+.|+++.|.+...+.-.+ .+.++-.|+..+|.+..|+-+.|..-.       ++|
T Consensus        82 lNl~~neisdvPeE---~Aam~aLr~lNl~~N~l~~~p~vi~-~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnep  157 (177)
T KOG4579|consen   82 LNLANNEISDVPEE---LAAMPALRSLNLRFNPLNAEPRVIA-PLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEP  157 (177)
T ss_pred             hhcchhhhhhchHH---HhhhHHhhhcccccCccccchHHHH-HHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCc
Confidence            68999999999975   8899999999999999998876655 599999999999999999887665544       566


Q ss_pred             ccccCC
Q psy10386         75 LVCTCD   80 (166)
Q Consensus        75 ~~C~C~   80 (166)
                      |.-.|.
T Consensus       158 l~~~~~  163 (177)
T KOG4579|consen  158 LGDETK  163 (177)
T ss_pred             ccccCc
Confidence            665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.13  E-value=0.00014  Score=62.50  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+|+.++..      .++|+.|++++|+++.+|..    ..+|+.|++++|+++.+|... ..+.        +|
T Consensus       387 LdLs~N~Lt~LP~l------~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N  455 (788)
T PRK15387        387 LIVSGNRLTSLPVL------PSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESL-IHLSSETTVNLEGN  455 (788)
T ss_pred             EEecCCcccCCCCc------ccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccChHH-hhccCCCeEECCCC
Confidence            67778888776653      25688888888888887652    246788899999998887642 2232        88


Q ss_pred             Cccc
Q psy10386         74 PLVC   77 (166)
Q Consensus        74 p~~C   77 (166)
                      ++..
T Consensus       456 ~Ls~  459 (788)
T PRK15387        456 PLSE  459 (788)
T ss_pred             CCCc
Confidence            8864

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.12  E-value=0.00017  Score=33.12  Aligned_cols=17  Identities=41%  Similarity=0.612  Sum_probs=9.0

Q ss_pred             CceeeccCCcCCccCcc
Q psy10386         25 LDSLVLAHNQLRTIPPR   41 (166)
Q Consensus        25 L~~L~ls~N~l~~i~~~   41 (166)
                      |++||+++|+++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            45555555555555444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.11  E-value=0.00056  Score=58.83  Aligned_cols=65  Identities=26%  Similarity=0.268  Sum_probs=34.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccC------------------CCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFA------------------HLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~------------------~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|+|+.++..  .+   .+|+.|++++|+++.++.....                  -..+|+.|++++|+|+.++
T Consensus       204 L~Ls~N~LtsLP~~--l~---~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L~~LP  278 (754)
T PRK15370        204 LILDNNELKSLPEN--LQ---GNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISCLP  278 (754)
T ss_pred             EEecCCCCCcCChh--hc---cCCCEEECCCCccccCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCccCccc
Confidence            56666666666654  32   3455555555555555432110                  0125666666666666665


Q ss_pred             ccccCCCC
Q psy10386         64 PAAFSGLE   71 (166)
Q Consensus        64 ~~~~~~l~   71 (166)
                      ...+..+.
T Consensus       279 ~~l~~sL~  286 (754)
T PRK15370        279 ENLPEELR  286 (754)
T ss_pred             cccCCCCc
Confidence            54443333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=97.09  E-value=0.00038  Score=33.22  Aligned_cols=22  Identities=45%  Similarity=0.753  Sum_probs=13.1

Q ss_pred             ccCceeeccCCcCCccCccccC
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFA   44 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~   44 (166)
                      ++|+.|+|++|+|+.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4556666666666666665553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=97.09  E-value=0.00038  Score=33.22  Aligned_cols=22  Identities=45%  Similarity=0.753  Sum_probs=13.1

Q ss_pred             ccCceeeccCCcCCccCccccC
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFA   44 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~   44 (166)
                      ++|+.|+|++|+|+.+++++|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4556666666666666665553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.94  E-value=0.00047  Score=31.61  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=18.5

Q ss_pred             CCCEEeccCCcccccCccccCCC
Q psy10386         48 LLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus        48 ~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      +|++||+++|+++.+++. |+.+
T Consensus         1 ~L~~Ldls~n~l~~ip~~-~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS-FSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTT-TTT-
T ss_pred             CccEEECCCCcCEeCChh-hcCC
Confidence            589999999999999887 7653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.93  E-value=0.0012  Score=56.90  Aligned_cols=58  Identities=24%  Similarity=0.298  Sum_probs=41.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~   67 (166)
                      |++++|.+..+|..  .+   .+|+.|++++|+++.++...+   .+|+.|++++|+++.++....
T Consensus       246 L~Ls~N~L~~LP~~--l~---s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp  303 (754)
T PRK15370        246 MELSINRITELPER--LP---SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP  303 (754)
T ss_pred             EECcCCccCcCChh--Hh---CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch
Confidence            45566666655543  21   468888999998888876432   589999999999999876543

>KOG0531|consensus

Probab=96.89  E-value=0.00041  Score=55.68  Aligned_cols=58  Identities=26%  Similarity=0.456  Sum_probs=29.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++.+|+|..+...   +..+++|+.|++++|+|+.+.+  +..+..|+.|++++|.++.+..
T Consensus       100 l~l~~n~i~~i~~~---l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~  157 (414)
T KOG0531|consen  100 LDLYDNKIEKIENL---LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG  157 (414)
T ss_pred             eeccccchhhcccc---hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccC
Confidence            44555555555541   3345555555555555555544  3344445555555555554443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.85  E-value=0.0015  Score=56.34  Aligned_cols=53  Identities=23%  Similarity=0.476  Sum_probs=31.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|.++.+|+.  ..   ++|+.|++++|+++.++.    .+++|+.|++++|+|+.++
T Consensus       206 LdLs~~~LtsLP~~--l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP  258 (788)
T PRK15387        206 LNVGESGLTTLPDC--LP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP  258 (788)
T ss_pred             EEcCCCCCCcCCcc--hh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCccc
Confidence            67777777777764  22   255666666666666553    1355666666666665554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=96.80  E-value=0.00096  Score=31.76  Aligned_cols=23  Identities=39%  Similarity=0.762  Sum_probs=21.0

Q ss_pred             CCCCCEEeccCCcccccCccccC
Q psy10386         46 LPLLNSLELDGNHIHTVDPAAFS   68 (166)
Q Consensus        46 l~~L~~l~l~~N~l~~~~~~~~~   68 (166)
                      +++|+.|++++|+|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46899999999999999999886

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=96.80  E-value=0.00096  Score=31.76  Aligned_cols=23  Identities=39%  Similarity=0.762  Sum_probs=21.0

Q ss_pred             CCCCCEEeccCCcccccCccccC
Q psy10386         46 LPLLNSLELDGNHIHTVDPAAFS   68 (166)
Q Consensus        46 l~~L~~l~l~~N~l~~~~~~~~~   68 (166)
                      +++|+.|++++|+|+.+++++|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46899999999999999999886

>KOG0531|consensus

Probab=96.43  E-value=0.0013  Score=52.76  Aligned_cols=58  Identities=21%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      .|++++|.|+.+.+-    ..++.|+.|++++|.|+.+..  |..+..|+.+++++|.+..+..
T Consensus       122 ~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  122 VLDLSFNKITKLEGL----STLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             heeccccccccccch----hhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhh
Confidence            378999999998864    567779999999999999976  6678999999999999998887

>KOG1644|consensus

Probab=96.41  E-value=0.003  Score=45.73  Aligned_cols=62  Identities=23%  Similarity=0.298  Sum_probs=49.9

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      +|.+++|+|+.+.++  .-.-+++|+.|.|.+|.|+.+.. ..+..+++|++|.+-+|+...-..
T Consensus        68 tLll~nNrIt~I~p~--L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~  130 (233)
T KOG1644|consen   68 TLLLNNNRITRIDPD--LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKN  130 (233)
T ss_pred             eEEecCCcceeeccc--hhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccC
Confidence            478999999999998  55567889999999999887532 235678899999999999876543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.40  E-value=0.0021  Score=27.51  Aligned_cols=15  Identities=40%  Similarity=0.662  Sum_probs=6.2

Q ss_pred             cCceeeccCCcCCcc
Q psy10386         24 NLDSLVLAHNQLRTI   38 (166)
Q Consensus        24 ~L~~L~ls~N~l~~i   38 (166)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555444

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.36  E-value=0.0012  Score=52.40  Aligned_cols=60  Identities=30%  Similarity=0.490  Sum_probs=37.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      |++++|++..++.   ....+++|+.|++++|+++.++.... .+++|+.|++++|+++.++..
T Consensus       145 L~l~~N~i~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~-~~~~L~~L~ls~N~i~~l~~~  204 (394)
T COG4886         145 LDLSDNKIESLPS---PLRNLPNLKNLDLSFNDLSDLPKLLS-NLSNLNNLDLSGNKISDLPPE  204 (394)
T ss_pred             ccccccchhhhhh---hhhccccccccccCCchhhhhhhhhh-hhhhhhheeccCCccccCchh
Confidence            4566666666642   23466666666666666666665421 456677777777777766664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.06  E-value=0.0043  Score=26.47  Aligned_cols=17  Identities=29%  Similarity=0.618  Sum_probs=11.5

Q ss_pred             CCCCEEeccCCcccccC
Q psy10386         47 PLLNSLELDGNHIHTVD   63 (166)
Q Consensus        47 ~~L~~l~l~~N~l~~~~   63 (166)
                      ++|+.|++++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999998775

...

>KOG1859|consensus

Probab=96.01  E-value=0.00047  Score=58.38  Aligned_cols=62  Identities=27%  Similarity=0.338  Sum_probs=51.0

Q ss_pred             EecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386          3 EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG   69 (166)
Q Consensus         3 ~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~   69 (166)
                      +.+.|++..++.   ++.-++.|+.|+|++|+++.+.  .+..+++|++||++.|.|+.++.-.-.+
T Consensus       170 ~fsyN~L~~mD~---SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~g  231 (1096)
T KOG1859|consen  170 SFSYNRLVLMDE---SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVG  231 (1096)
T ss_pred             hcchhhHHhHHH---HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhh
Confidence            456777776665   5677889999999999999997  5789999999999999999887754444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.94  E-value=0.0035  Score=49.79  Aligned_cols=60  Identities=25%  Similarity=0.423  Sum_probs=50.3

Q ss_pred             EEecCCCCceeeCCccccCCCc-cCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLH-NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~-~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      |++.+|+++.+++.   ...+. +|+.|++++|.++.++.. ...+++|+.|++++|++..++..
T Consensus       121 L~l~~n~i~~i~~~---~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         121 LDLDNNNITDIPPL---IGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             EecCCcccccCccc---cccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhh
Confidence            67889999999985   23443 899999999999999632 56889999999999999998886

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.71  E-value=0.023  Score=37.50  Aligned_cols=56  Identities=21%  Similarity=0.360  Sum_probs=22.0

Q ss_pred             CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386          8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~   67 (166)
                      .+..+...  .|.+..+|+.+.+..+ ++.+...+|.+..+++.+.+.+ .+..++...|
T Consensus        22 ~~~~I~~~--~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen   22 TIKKIGEN--AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             T--EE-TT--TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             CeeEeChh--hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            34444444  4555555555555443 4555555555544455555533 4444444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.70  E-value=0.021  Score=37.70  Aligned_cols=63  Identities=22%  Similarity=0.413  Sum_probs=46.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG   69 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~   69 (166)
                      +.+.++ +..+...  .|.+..+++.+.+.+ .+..++...|....+++.+++..+ +..+....|..
T Consensus        40 i~~~~~-~~~i~~~--~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~  102 (129)
T PF13306_consen   40 INFPNN-LTSIGDN--AFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN  102 (129)
T ss_dssp             EEESST-TSCE-TT--TTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred             cccccc-cccccee--eeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence            445554 8888888  999998999999976 778888889988999999999876 88888877764

>KOG0532|consensus

Probab=95.37  E-value=0.0019  Score=53.30  Aligned_cols=70  Identities=26%  Similarity=0.446  Sum_probs=37.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccc----------------------cCCCCCCCEEeccCCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRV----------------------FAHLPLLNSLELDGNHI   59 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~----------------------f~~l~~L~~l~l~~N~l   59 (166)
                      |-+++|+++.++.+   .+.+..|.+||.+.|.+..+++..                      +..| .|..||++.|++
T Consensus       148 li~sNNkl~~lp~~---ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNki  223 (722)
T KOG0532|consen  148 LIVSNNKLTSLPEE---IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKI  223 (722)
T ss_pred             EEEecCccccCCcc---cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCce
Confidence            34555555555554   234555555555555555544331                      1122 366677777777


Q ss_pred             cccCccccCCCC--------CCCcc
Q psy10386         60 HTVDPAAFSGLE--------DNPLV   76 (166)
Q Consensus        60 ~~~~~~~~~~l~--------~Np~~   76 (166)
                      ..||-. |..+.        +||++
T Consensus       224 s~iPv~-fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  224 SYLPVD-FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             eecchh-hhhhhhheeeeeccCCCC
Confidence            777643 33333        67775

>KOG0532|consensus

Probab=94.93  E-value=0.0057  Score=50.62  Aligned_cols=57  Identities=23%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             ecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          4 IWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         4 ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      ++.|.+..++.   ....+..|..||++.|+++.++...+ . --|+.|-+++|++..+++.
T Consensus       105 Ly~n~~r~ip~---~i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sNNkl~~lp~~  161 (722)
T KOG0532|consen  105 LYHNCIRTIPE---AICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSNNKLTSLPEE  161 (722)
T ss_pred             HHhccceecch---hhhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEecCccccCCcc
Confidence            33444444443   23445555555555555555555543 2 2255555555555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=94.35  E-value=0.016  Score=44.30  Aligned_cols=38  Identities=29%  Similarity=0.360  Sum_probs=17.5

Q ss_pred             ccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCccc
Q psy10386         23 HNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      ++|+.|++++|.++.-.    ...+..+++|+.|++++|.++
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            45555555555554210    112333445555555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=94.22  E-value=0.013  Score=44.85  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             EEecCCCCceeeCCccccCCCcc---CceeeccCCcCCccC----ccccCCC-CCCCEEeccCCccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHN---LDSLVLAHNQLRTIP----PRVFAHL-PLLNSLELDGNHIH   60 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~---L~~L~ls~N~l~~i~----~~~f~~l-~~L~~l~l~~N~l~   60 (166)
                      |++++|.+....+.  .|..+.+   |+.|++++|+++...    ...+..+ ++|+.|++++|.++
T Consensus        86 L~l~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          86 LDLSDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             EEccCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            56666666543333  3444444   777777777665211    1223344 67777777777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2739|consensus

Probab=94.14  E-value=0.035  Score=41.56  Aligned_cols=43  Identities=28%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             ccCCCccCceeeccCC--cCCc-cCccccCCCCCCCEEeccCCcccc
Q psy10386         18 TSGGLHNLDSLVLAHN--QLRT-IPPRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus        18 ~f~~l~~L~~L~ls~N--~l~~-i~~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      .|..|++|+.|.++.|  ++.. ++.- ....++|+++++++|+++-
T Consensus        60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   60 NFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             cCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCcccc
Confidence            4667889999999999  4432 3332 3355999999999999864

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=93.81  E-value=0.047  Score=26.02  Aligned_cols=17  Identities=35%  Similarity=0.632  Sum_probs=10.0

Q ss_pred             ccCceeeccCCcCCccC
Q psy10386         23 HNLDSLVLAHNQLRTIP   39 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~   39 (166)
                      .+|+.|+++.|+|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            45666666666665553

>PLN03210 Resistant to P

Probab=93.77  E-value=0.11  Score=47.20  Aligned_cols=51  Identities=22%  Similarity=0.425  Sum_probs=24.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN   57 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N   57 (166)
                      |++++|++..++.+   +..+++|+.|+++++ .++.++.  +..+++|+.|++++|
T Consensus       616 L~L~~s~l~~L~~~---~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c  667 (1153)
T PLN03210        616 LQMQGSKLEKLWDG---VHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDC  667 (1153)
T ss_pred             EECcCccccccccc---cccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCC
Confidence            44555555554432   345555555555544 2334432  334444555555443

syringae 6; Provisional

>KOG2123|consensus

Probab=93.71  E-value=0.0048  Score=46.93  Aligned_cols=54  Identities=24%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHI   59 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l   59 (166)
                      |.||-|+|+.+.+    |.+..+|++|+|..|.|..+.. ..+.++++|+.|.|..|+-
T Consensus        46 LsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   46 LSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC  100 (388)
T ss_pred             EEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence            5566666666653    4566666666666666666543 2345666666666666654

>KOG4658|consensus

Probab=93.37  E-value=0.023  Score=50.02  Aligned_cols=53  Identities=25%  Similarity=0.367  Sum_probs=25.9

Q ss_pred             EEecCC-CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCc
Q psy10386          2 IEIWGG-QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH   58 (166)
Q Consensus         2 L~ls~N-~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~   58 (166)
                      |||++| .+..+|.   ..++|-+||+|++++..++.+|.+ ++.+..|.+|++..+.
T Consensus       576 LDLs~~~~l~~LP~---~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  576 LDLSGNSSLSKLPS---SIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVTG  629 (889)
T ss_pred             EECCCCCccCcCCh---HHhhhhhhhcccccCCCccccchH-HHHHHhhheecccccc
Confidence            455544 3333433   234455555555555555555444 4455555555555443

>KOG4658|consensus

Probab=93.05  E-value=0.04  Score=48.52  Aligned_cols=60  Identities=23%  Similarity=0.232  Sum_probs=46.3

Q ss_pred             EecCCC--CceeeCCccccCCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          3 EIWGGQ--LSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         3 ~ls~N~--l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      -+..|.  +..++.+  .|..++.|+.|||++| .+..+|.. .+.+-+|++|++++..++.+|.+
T Consensus       551 ll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~I~~LP~~  613 (889)
T KOG4658|consen  551 LLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTGISHLPSG  613 (889)
T ss_pred             EEeecchhhhhcCHH--HHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCCCccccchH
Confidence            344554  5556666  6899999999999988 56667554 67899999999999999888764

>PLN03210 Resistant to P

Probab=92.93  E-value=0.19  Score=45.69  Aligned_cols=52  Identities=25%  Similarity=0.348  Sum_probs=29.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN   57 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N   57 (166)
                      |++++|....-.|.  .+.++++|+.|+++++ .++.+|...  .+++|+.|++++|
T Consensus       783 L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c  835 (1153)
T PLN03210        783 LFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGC  835 (1153)
T ss_pred             eeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCC
Confidence            55666643332333  5777888888888775 566665442  3445555555543

syringae 6; Provisional

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.68  E-value=0.048  Score=25.63  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=16.6

Q ss_pred             ceecCCCCCCcccCccccCCCC-cccCC
Q psy10386        104 TVCTLGSSNVHQREIKLSDLPK-QLVCE  130 (166)
Q Consensus       104 ~~C~~p~~~~~~~~~~l~~~~~-~~~C~  130 (166)
                      ..|..|+.   ++| ++.+++. ++.|.
T Consensus         2 ~~Ca~P~~---lrg-~l~~~~~~~f~C~   25 (25)
T PF01463_consen    2 ARCASPPE---LRG-PLLDLPPSDFKCS   25 (25)
T ss_dssp             -BEEESGG---GTT-BGGGSSGGG----
T ss_pred             CccCCChH---HcC-cHhhCCcccCcCC
Confidence            67999999   999 9999987 77773

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>KOG2123|consensus

Probab=91.83  E-value=0.0088  Score=45.57  Aligned_cols=64  Identities=25%  Similarity=0.415  Sum_probs=50.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc-ccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-AFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~-~~~~l~   71 (166)
                      |+..+..++.+.    .-..++.|+.|.||-|+|+.+.+  |....+|+.|+|..|.|..+..- .+.+++
T Consensus        24 LNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlp   88 (388)
T KOG2123|consen   24 LNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLP   88 (388)
T ss_pred             hcccCCCccHHH----HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence            445555665554    34678999999999999999987  77899999999999999888763 345555

>KOG3207|consensus

Probab=91.63  E-value=0.15  Score=41.20  Aligned_cols=59  Identities=20%  Similarity=0.298  Sum_probs=36.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccc------cCCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRV------FAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~------f~~l~~L~~l~l~~N~l~~   61 (166)
                      |||++|++-..+.. .....++.|+.|+++.+.+..+..-.      ....++|++|++..|++..
T Consensus       251 LdLs~N~li~~~~~-~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  251 LDLSNNNLIDFDQG-YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             ccccCCcccccccc-cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            67777777665532 03445667777777777776654211      2345778888888888744

>KOG0473|consensus

Probab=90.98  E-value=0.0033  Score=46.67  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=29.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      ||++.|++-.+...   |+-+..|..||++.|++..++.+ |..+..+..+++.+|.++..
T Consensus        47 ld~~s~r~vn~~~n---~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n~~~~~  103 (326)
T KOG0473|consen   47 LDLSSNRLVNLGKN---FSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKNNHSQQ  103 (326)
T ss_pred             ehhhhhHHHhhccc---hHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhccchhhC
Confidence            45555555544443   55555555566666655555544 34444455555555555444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.90  E-value=0.16  Score=24.15  Aligned_cols=18  Identities=22%  Similarity=0.514  Sum_probs=12.9

Q ss_pred             CCCCEEeccCCcccccCc
Q psy10386         47 PLLNSLELDGNHIHTVDP   64 (166)
Q Consensus        47 ~~L~~l~l~~N~l~~~~~   64 (166)
                      ++|+.|+.++|+|+++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457777777777777765

>KOG3207|consensus

Probab=90.05  E-value=0.095  Score=42.26  Aligned_cols=44  Identities=30%  Similarity=0.372  Sum_probs=21.1

Q ss_pred             cCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCccccc
Q psy10386         19 SGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus        19 f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      +.-+..|+.|||++|++-..+. .....++.|..|+++.+.+.++
T Consensus       242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence            4444555555555555544442 1223344555555555555443

>KOG0473|consensus

Probab=88.69  E-value=0.033  Score=41.50  Aligned_cols=55  Identities=9%  Similarity=0.042  Sum_probs=48.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      |+++.|++..++.+   |..+..++.+++..|.++..|.+ |...+.++.+++.+|.+.
T Consensus        70 l~~sknq~~~~~~d---~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   70 LDLSKNQIKFLPKD---AKQQRETVNAASHKNNHSQQPKS-QKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HhccHhhHhhChhh---HHHHHHHHHHHhhccchhhCCcc-ccccCCcchhhhccCcch
Confidence            68899999888874   88999999999999999988765 789999999999999854

>KOG2982|consensus

Probab=88.69  E-value=0.17  Score=39.11  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=14.5

Q ss_pred             CceeeccCCcCCccC--ccccCCCCCCCEEeccCCcc
Q psy10386         25 LDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHI   59 (166)
Q Consensus        25 L~~L~ls~N~l~~i~--~~~f~~l~~L~~l~l~~N~l   59 (166)
                      ++.+||.+|+|+...  ...+.++|.|++|+++.|++
T Consensus        73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL  109 (418)
T ss_pred             hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence            344444444444322  12233444444444444444

>KOG2739|consensus

Probab=88.66  E-value=0.27  Score=36.93  Aligned_cols=59  Identities=24%  Similarity=0.328  Sum_probs=39.4

Q ss_pred             EEecCC--CCc-eeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGG--QLS-SIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N--~l~-~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |.+|.|  ++. ++...   -..+++|++|++++|+++.+.. ...+.+.+|..|++.++.-..+.
T Consensus        70 L~lsdn~~~~~~~l~vl---~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~  132 (260)
T KOG2739|consen   70 LELSDNYRRVSGGLEVL---AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD  132 (260)
T ss_pred             hcccCCcccccccceeh---hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence            567888  443 23332   3355999999999999875321 12456778888999888765543

>TIGR00864 PCC polycystin cation channel protein

Probab=85.50  E-value=0.4  Score=46.66  Aligned_cols=32  Identities=28%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             EecCCCCceeeCCccccCCCccCceeeccCCcCC
Q psy10386          3 EIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLR   36 (166)
Q Consensus         3 ~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~   36 (166)
                      ||++|+|+.++++  .|.++++|+.|+|++|-+.
T Consensus         1 DLSnN~LstLp~g--~F~~L~sL~~LdLsgNPw~   32 (2740)
T TIGR00864         1 DISNNKISTIEEG--ICANLCNLSEIDLSGNPFE   32 (2740)
T ss_pred             CCCCCcCCccChH--HhccCCCceEEEeeCCccc
Confidence            6899999999999  9999999999999999763

Note: this model has been restricted to the amino half because for technical reasons.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.84  E-value=0.66  Score=21.14  Aligned_cols=15  Identities=40%  Similarity=0.696  Sum_probs=8.7

Q ss_pred             CCCCEEeccCCcccc
Q psy10386         47 PLLNSLELDGNHIHT   61 (166)
Q Consensus        47 ~~L~~l~l~~N~l~~   61 (166)
                      ++|+.|++++|+++.
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            567777777777653

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.53  E-value=0.73  Score=22.06  Aligned_cols=13  Identities=38%  Similarity=0.526  Sum_probs=7.5

Q ss_pred             cCceeeccCCcCC
Q psy10386         24 NLDSLVLAHNQLR   36 (166)
Q Consensus        24 ~L~~L~ls~N~l~   36 (166)
                      +|+.|||++|.+.
T Consensus         3 ~L~~LdL~~N~i~   15 (28)
T smart00368        3 SLRELDLSNNKLG   15 (28)
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

>KOG3763|consensus

Probab=81.72  E-value=0.5  Score=39.27  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             CCccCceeeccCCcCCccCc--cccCCCCCCCEEeccCC
Q psy10386         21 GLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGN   57 (166)
Q Consensus        21 ~l~~L~~L~ls~N~l~~i~~--~~f~~l~~L~~l~l~~N   57 (166)
                      +.+.+..+.|++|++..++.  ..-+..|+|+.|+|++|
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            34566667777777766642  11223567777777777

>PRK15386 type III secretion protein GogB; Provisional

Probab=81.55  E-value=2.1  Score=34.77  Aligned_cols=54  Identities=19%  Similarity=0.198  Sum_probs=33.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccC-CcCCccCccccCCCCCCCEEeccCC-cccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~-N~l~~i~~~~f~~l~~L~~l~l~~N-~l~~~~~   64 (166)
                      |+++++.++.+|.-      .++|+.|.+++ +.++.++.. +  ..+|+.|++++| .+..+++
T Consensus        57 L~Is~c~L~sLP~L------P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         57 LYIKDCDIESLPVL------PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             EEeCCCCCcccCCC------CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc
Confidence            67788877777632      24577778766 466555532 2  246777777777 5655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	166
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		5e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-06
2xot_A	361	Crystal Structure Of Neuronal Leucine Rich Repeat P		1e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		3e-05
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		1e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-04
4arn_A	279	Crystal Structure Of The N-terminal Domain Of Droso		5e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		7e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		8e-04
2ifg_A	347	Structure Of The Extracellular Segment Of Human Trk		8e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		9e-04

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 10/98 (10%)
Query: 1   MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
           +I++   ++S++  +  +   +  L +L+L++N+LR IPPR F  L  L  L L GN I 
Sbjct: 58  LIDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 61  TVDPAAFSGLE--------DNPLVCTCDLMWYKEWSTS 90
            V   AF+ L          NPL C C++ W  +W  S
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKS 153

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
           L +L  L L +NQL+ +P   F  L  L +L+LD N +  V   AF  LE        +N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 74  PLVCTCD-LMWYKEWSTSLGEKEDE 97
           P  CTC+ +++  +W   L +K DE
Sbjct: 216 PWDCTCNGIIYMAKW---LKKKADE 237

>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein Amigo-1 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           T   L NL SL+L+HN L  I    F  +P L  L+L  NH+HT+D   FS L+
Sbjct: 59  TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
           L NL  L    N+L  IP  VF  L  L  L+L+ NH+ ++   AF  L+        +N
Sbjct: 56  LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 74  PLVCTC-DLMWYKEW 87
           P  C C D+M+ + W
Sbjct: 116 PWDCECRDIMYLRNW 130

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED-------- 72
           GL +L +L+L  N++  +    F  L  +  L L  N I TV P AF  L          
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162
Query: 73  NPLVCTCDLMWYKEW 87
           NP  C C L W  EW
Sbjct: 163 NPFNCNCYLAWLGEW 177

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
            GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNC 211
Query: 80  DLMWYKEW 87
           ++++++ W
Sbjct: 212 EILYFRRW 219

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
            GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNC 211
Query: 80  DLMWYKEW 87
           ++++++ W
Sbjct: 212 EILYFRRW 219

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 170 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 212
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 213 ILYFRRW 219

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 17/67 (25%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GL NLD+L+L  N L TIP   F            G+H+       F+ L  NP +C C+
Sbjct: 171 GLENLDTLLLQENSLYTIPKGFF------------GSHL-----LPFAFLHGNPWLCNCE 213
Query: 81  LMWYKEW 87
           +++++ W
Sbjct: 214 ILYFRRW 220

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCD 80
           GLH L +L L  NQ+  + P  F HL  L SL                 L  NP  C C 
Sbjct: 100 GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL----------------NLASNPFNCNCH 143
Query: 81  LMWYKEW 87
           L W+ EW
Sbjct: 144 LAWFAEW 150

>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila Toll Receptor Length = 279

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
           L NL+S+    N+LR +P  +F  +P L  L L  N + +V    F          L  N
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Query: 74  PLVCTCDLMWY-KEWSTSLGEKE 95
           P  C+C  + Y   W     +KE
Sbjct: 229 PWDCSCPRIDYLSRWLNKNSQKE 251

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 6   GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
           G ++SS+ E+     GLH+LD L+L  N++  + P  F  L  L +L L  N++  +   
Sbjct: 161 GNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 218
Query: 66  AFSGLE--------DNPLVCTC 79
           A + L         DNP VC C
Sbjct: 219 ALAPLRALQYLRLNDNPWVCDC 240

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 6   GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
           G ++SS+ E+     GLH+LD L+L  N++  + P  F  L  L +L L  N++  +   
Sbjct: 162 GNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 66  AFSGLE--------DNPLVCTC 79
           A + L         DNP VC C
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDC 241

>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In Complex With Nerve Growth Factor Length = 347

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DN 73
           GL  L +L +  + LR + P  F   P L+ L L  N + ++      GL         N
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
Query: 74  PLVCTCDLMWYKEW 87
           PL C+C L W + W
Sbjct: 114 PLHCSCALRWLQRW 127

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
           L  L  + L   QL  + P  F  L  L  L + GN + T++ + F          L+ N
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Query: 74  PLVCTCDLMWY--KEWSTSLGEKE 95
           PL C C L+W   + W  +   ++
Sbjct: 331 PLACDCRLLWVFRRRWRLNFNRQQ 354

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-19
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	9e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-08
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 3e-20
 Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 18/118 (15%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
           GLH+LD L+L  N++  + P  F  L  L +L L  N++  +   A +         L D
Sbjct: 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL-PKQLVC 129
           NP VC C       W         E        C   S         L  L    L  
Sbjct: 235 NPWVCDCRARPLWAWLQKFRGSSSE------VPC---SLPQRLAGRDLKRLAANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 6e-13
 Identities = 21/50 (42%), Positives = 24/50 (48%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL  L  L L  N L+ +P   F  L  L  L L GN I +V   AF GL
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 15/50 (30%), Positives = 21/50 (42%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL  L +L L    L+ + P +F  L  L  L L  N +  +    F  L
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL  L+ L L+ N QLR++ P  F  L  L++L LD   +  + P  F GL
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
              NL  L L  N L  I    F  L LL  L+L  N  + +VDPA F GL
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              + L  N++  +P   F     L  L L  N +  +D AAF+GL
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 18/120 (15%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
           GL +L +L+L  N++  +    F  L  +  L L  N I TV P AF  L          
Sbjct: 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP-KQLVCEG 131
           NP  C C L W  EW   L +K     +     C         +EI + D+  +   C+ 
Sbjct: 163 NPFNCNCYLAWLGEW---LRKKRIVTGN---PRC---QKPYFLKEIPIQDVAIQDFTCDD 213

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           + + + E       L  L  +  ++N++  I    F     +N + L  N +  V    F
Sbjct: 43  EFTVL-EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101

Query: 68  SGL 70
            GL
Sbjct: 102 KGL 104

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 24 NLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              L L +N+   +    +F  LP L  +    N I  ++  AF G 
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA 80

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 16/119 (13%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
           GL +L  L + ++Q+  I    F  L  L  L L  N++ ++    F+         L  
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL-PKQLVCE 130
           NP  C CD++W   W                  C    + +H R   L ++      C 
Sbjct: 300 NPWNCDCDILWLAWWLREYIPTNSTCC----GRC---HAPMHMRGRYLVEVDQASFQCS 351

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 9e-13
 Identities = 18/50 (36%), Positives = 26/50 (52%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL +L++L L  N L  IP   F +L  L  L L  N I ++   AF+ +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            LH+L+ L L  N +R I    F  L  LN+LEL  N +  +   AF  L
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 71
            L  L  L L +N + +IP   F  +P L  L+L +   +  +   AF GL 
Sbjct: 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL NL  L L    ++ +P      L  L  LE+ GNH   + P +F GL
Sbjct: 194 GLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGL 241

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           N   L L  N ++ I    F HL  L  L+L  N I  ++  AF+GL
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGL 122

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 21  GLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            + +L  L L    +L  I    F  L  L  L L   +I  +     + L
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPL 217

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 4e-04
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +    +V     L  +P  + ++      L L  N+I  +    F  L
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADTFRHL 98

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.1 bits (203), Expect = 4e-19
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
           GL +L  L +  +Q++ I    F +L  L  + L  N++  +    F+ L          
Sbjct: 229 GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL-PKQLVCE 130
           NP  C CD++W   W   +              C   ++  + +   + +L      C 
Sbjct: 289 NPWNCNCDILWLSWWIKDMAPSNTACC----ARC---NTPPNLKGRYIGELDQNYFTCY 340

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           GL NL++L L  N+L TIP   F +L  L  L L  N I ++   AF+ + 
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L +L+ L L+ N +RTI    F  L  LN+LEL  N + T+   AF  L
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL NL  L LA   LR IP      L  L+ L+L GNH+  + P +F GL
Sbjct: 183 GLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGL 230

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGLE 71
            L  L  L L +N + +IP   F  +P L  L+L +   +  +   AF GL 
Sbjct: 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           N   L L  NQ++ I    F HL  L  L+L  NHI T++  AF+GL
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 21  GLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            + +L  L L    +L  I    F  L  L  L L   ++  +     + L
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPL 206

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +    ++     LR +P  +  +      L L  N I  +   +F  L
Sbjct: 43 NQFSKVICVRKNLREVPDGISTN---TRLLNLHENQIQIIKVNSFKHL 87

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 1e-18
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           QL  +         L +L  L ++HN   ++    +  L  L  L+   NHI T      
Sbjct: 186 QLEQL--SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243

Query: 68  SG---------LEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVC 106
                      L  N   CTC+   + +W   + ++    +  +R  C
Sbjct: 244 QHFPSSLAFLNLTQNDFACTCEHQSFLQW---IKDQRQLLVEVERMEC 288

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 9e-11
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL  L+ L   H+ L+ +    VF  L  L  L++   H        F+GL
Sbjct: 99  GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL +L+ L +A N       P +F  L  L  L+L    +  + P AF+ L
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAA 66
            L  + E  +    L NL  L ++H   R     +F  L  L  L++ GN       P  
Sbjct: 112 NLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

Query: 67  FSGL 70
           F+ L
Sbjct: 171 FTEL 174

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAA 66
            LS       +  G  +L  L L+ N + T+    F  L  L  L+   +++  + + + 
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSV 121

Query: 67  FSGL 70
           F  L
Sbjct: 122 FLSL 125

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
          +   L L  N+L+++P  VF  L  L  L L  N +        +  G 
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 21  GLHNLDSLVLAHNQLRT--IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L  L  L L+ N L       +       L  L+L  N + T+  + F GL
Sbjct: 50  KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGL 100

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
            L  L  + L   QL  + P  F  L  L  L + GN + T++ + F          L+ 
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE 130
           NPL C C L+W       L     +        C   ++    +  +  D P  L+  
Sbjct: 330 NPLACDCRLLWVFRRRWRLNFNRQQ------PTC---ATPEFVQGKEFKDFPDVLLPN 378

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 16/52 (30%), Positives = 25/52 (48%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
           GL++L+ L L    L +IP    +HL  L  L L   +I+ +   +F  L  
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L NL +L L  N+L+ IP  VF  L  L  L++  N I  +    F  L
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL NL  L ++ N++  +   +F  L  L SLE+  N +  +   AFSGL
Sbjct: 102 GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 6e-12
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L+NL SL +  N L  I  R F+ L  L  L L+  ++ ++   A S L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             NL SL + H  L  +P     HL  L  L L  N I T++ +    L
Sbjct: 223 GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              +L+ L L  N +  + P  F +L  L +L L  N +  +    F+GL
Sbjct: 54  SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
              L L  N+++T+    FA  P L  LEL+ N +  V+P AF+ L 
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF 80

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGL 70
            LH L  L L H  +  I    F  L  L  LE+    ++ T+ P    GL
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 10/50 (20%), Positives = 17/50 (34%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L+ L  L ++H            +   L SL +   ++  V   A   L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.1 bits (185), Expect = 2e-17
 Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 16/114 (14%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
           GL +L  L+L  N++  +    F  L  LN L L  N + T+    FS L          
Sbjct: 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQ--REIKLSDLP 124
           NP +C C L W  ++   L     E        CT      ++   +IK     
Sbjct: 162 NPFICDCHLKWLADY---LHTNPIETSG---ARCTSPRRLANKRIGQIKSKKFR 209

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 7e-11
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +  I     +      L  + L++NQ+  + P  F  L  LNSL L GN I  +  + F
Sbjct: 43  TIKVIPPGAFS--PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 68  SGL 70
            GL
Sbjct: 101 EGL 103

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           +  + L  N ++ IPP  F+    L  ++L  N I  + P AF GL
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 74.4 bits (182), Expect = 1e-16
 Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 9/121 (7%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG-------LEDN 73
           GL  L +L +  + LR + P  F   P L+ L L  N + ++      G       L  N
Sbjct: 54  GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

Query: 74  PLVCTCDLMWYKEW--STSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEG 131
           PL C+C L W + W      G  E +     +       +           +P   V  G
Sbjct: 114 PLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVG 173

Query: 132 E 132
           +
Sbjct: 174 D 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 10/88 (11%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           QL  I         LH L  L ++HN L  +    +  L  L++L+   N I T      
Sbjct: 484 QLEQISWG--VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 68  SG--------LEDNPLVCTCDLMWYKEW 87
                     L +N + C C+   + +W
Sbjct: 542 HFPKSLAFFNLTNNSVACICEHQKFLQW 569

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            GLH+L +L+L  N +++  P  F+ L  L +L      + +++      L
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL 127

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
                L  L L+  ++ TI  + +  L  L++L L GN I +  P +FSGL
Sbjct: 53  SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 70
            GL +L++LV    +L ++       L  L  L +  N IH+   PA FS L
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +  ++ L+ N L+ +    F++   L  L+L    I T++  A+ GL
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGL 79

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNP 74
           G L  L  L +AHN + +   P  F++L  L  ++L  N+I T+       L +NP
Sbjct: 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-A 66
            L  + E  A    L  L  L +++   +     +F  L  LN+L++ GN       +  
Sbjct: 410 TLKRVTEFSAFLS-LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 67  FSGL 70
           F+  
Sbjct: 469 FANT 472

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            GL +L++L +A N  +      VFA+   L  L+L    +  +    F  L
Sbjct: 445 LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHL----PLLNSLELDGNHIHTVD 63
            + S  +  A    L NL  + L++N ++TI       L     +  SL++  N I  + 
Sbjct: 139 FIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197

Query: 64  PAAFSGL 70
             AF G+
Sbjct: 198 DQAFQGI 204

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
            +  L  L SL L  N+           LP L+ L+L  N +      ++S L  N L
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-A 66
            LS       +  G ++L  L L+ N    I    F  L  L  L+   + +  V    A
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 67  FSGL 70
           F  L
Sbjct: 420 FLSL 423

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPAAFSGLE 71
               L +L  L L+ N L       ++ L    L  L+L  N    +  A F GLE
Sbjct: 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLE 399

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 21  GLHNL--DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
           GL ++  D   L +    +     F  L  ++++ L G  I  ++     
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKH 306

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 2/52 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L N+ ++ LA   ++ +            SL +    +          L+
Sbjct: 282 HCLANVSAMSLAGVSIKYLED--VPKHFKWQSLSIIRCQLKQFPTLDLPFLK 331

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 70.4 bits (173), Expect = 8e-16
 Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 20/133 (15%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           QL+ I           ++  L L  N+++ I  ++F  L  L +L L  N I  V P +F
Sbjct: 65  QLTGIEPNAFEG--ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122

Query: 68  SGLE--------DNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIK 119
             L          NP  C C L W+ EW   L +K     + +   C    +    R+++
Sbjct: 123 EHLNSLTSLNLASNPFNCNCHLAWFAEW---LRKKSLNGGAAR---C---GAPSKVRDVQ 173

Query: 120 LSDL-PKQLVCEG 131
           + DL   +  C  
Sbjct: 174 IKDLPHSEFKCSS 186

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 26 DSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L+L  N+L  I    +F  LP L  LEL  N +  ++P AF G 
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 8e-16
 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           +L ++   + T      L+ L LA+N L  +P  +   L  L++L L  N ++T+    F
Sbjct: 135 ELKTLPPGLLT--PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

Query: 68  S-------GLEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSN 112
                    L  NP +C C++++++ W   L +  +     K+ V     ++
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEILYFRRW---LQDNAENVYVWKQGVDVKAMTS 241

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L  L  L ++ N+L ++P      L  L  L L GN + T+ P   +  
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 3e-09
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           +L+ +       G L  L +L L+HNQL+++P  +   LP L  L++  N + ++   A 
Sbjct: 66  ELTKL----QVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 68  SGL 70
            GL
Sbjct: 121 RGL 123

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 8  QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           L +             L  L L   +L  +   V   LP+L +L+L  N + ++ P   
Sbjct: 42 LLYTFSLATLM--PYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSL-PLLG 96

Query: 68 SGL 70
            L
Sbjct: 97 QTL 99

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 2/47 (4%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +   L L+ N L T           L  L LD   +  +       L
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTL 76

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 1e-15
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           QL  +         L +L  L ++HN   ++    +  L  L  L+   NHI T      
Sbjct: 481 QLEQLSPT--AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 538

Query: 68  SG---------LEDNPLVCTCDLMWYKEW 87
                      L  N   CTC+   + +W
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 10/51 (19%), Positives = 23/51 (45%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L +L +L+L  N ++++    F+ L  L  L     ++ +++      L
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
               L  L L+  +++TI    +  L  L++L L GN I ++   AFSGL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 70
            GL +L  LV     L ++      HL  L  L +  N I +   P  FS L
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +  +L L+ N LR +    F   P L  L+L    I T++  A+  L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 20  GGLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
            GL +L+ L +A N       P +F  L  L  L+L    +  + P AF+ L 
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAAFSGL 70
             L NL  L ++H   R     +F  L  L  L++ GN       P  F+ L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 6   GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLP----LLNSLELDGNHIHT 61
             +L   F        L NL+ L L+ N++++I       L     L  SL+L  N ++ 
Sbjct: 138 SFKLPEYF------SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 62  VDPAAFSGL 70
           + P AF  +
Sbjct: 192 IQPGAFKEI 200

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-A 66
            LS       +  G  +L  L L+ N + T+    F  L  L  L+   +++  +     
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416

Query: 67  FSGL 70
           F  L
Sbjct: 417 FLSL 420

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 8/69 (11%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           ++ +   +  +F        L N+ S  L    +  +    F++      LEL       
Sbjct: 267 LDYYLDDIIDLF------NCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

Query: 62  VDPAAFSGL 70
                   L
Sbjct: 319 FPTLKLKSL 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 18  TSGGLHNLDSLVLAHNQL--RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           +   L +L+ L L+ N L  +    +       L  L+L  N + T+  + F GL
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGL 395

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 17/125 (13%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            LSSI +       L  ++ + L+HN+L +      +HL  +  L L  NHI  + P+  
Sbjct: 487 DLSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543

Query: 68  SG--------LEDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIK 119
                     L  NPL CTC  +++ EW     E   +    + T+C    +    R ++
Sbjct: 544 PILSQQRTINLRQNPLDCTCSNIYFLEW---YKENMQKLEDTEDTLC---ENPPLLRGVR 597

Query: 120 LSDLP 124
           LSD+ 
Sbjct: 598 LSDVT 602

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 15/51 (29%), Positives = 20/51 (39%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL  L L   Q+  I    F     L++L L  N +  +   A SG 
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 12/52 (23%), Positives = 17/52 (32%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
            G   L  L      + +I      +   L SL L  NHI ++        E
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 12/51 (23%), Positives = 17/51 (33%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              H LD+LVL  N L  +     +    L  L      I ++D       
Sbjct: 78  QSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQ 128

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AA 66
            + +          L +L SL L++N+  ++    F   P L  L+L    +   D  + 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 67  FSGL 70
           F  L
Sbjct: 421 FQNL 424

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 13/52 (25%), Positives = 19/52 (36%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
                L+SL L  N + +I          L  L+   N IH +     S L+
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           ++ + L  + N L TI    F+ L  L  L+L    I+ +    F   
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ 80

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAA 66
            LS +   +    GL  L  LVL+ N+   +     ++ P L  L + GN     +    
Sbjct: 289 HLSELPSGL---VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 67  FSGL 70
              L
Sbjct: 346 LENL 349

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
                L+ L LA  +L+    +  F +L LL  L L  + +       F GL
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD---PAAFSGL 70
             LH L  L L+H+ L     ++F  LP L  L L GNH    +     +   L
Sbjct: 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTI---PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
            GL  L  L L  N               L  L  L L    + ++D  AF+ L+
Sbjct: 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
               I   V       +++S+ L  +    I    F     L  L+L   H+  + P+  
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-PSGL 297

Query: 68  SGL 70
            GL
Sbjct: 298 VGL 300

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELD--GNHIHTVDPA 65
            +SSI  K+        L  L   +N +  +     + L    +L L+  GN I  ++P 
Sbjct: 140 HISSI--KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 66  AFSGL 70
           AF   
Sbjct: 198 AFDSA 202

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L NL  L L+H+ + T         +L  L SL L  N   ++   AF    
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 2/65 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDPA 65
           Q   +  K   +  + +L            I P VF  L  ++  S+ L  ++   +   
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272

Query: 66  AFSGL 70
            F   
Sbjct: 273 TFHCF 277

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 20  GGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
               +L  L +  N  R  +      +L  L  L+L  + I T D        L
Sbjct: 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 13/80 (16%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSG-------- 69
            +  L  L L+ NQ+   P  +      LP L  L+L  N +  +               
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 70  --LEDNPLVCTCDLMWYKEW 87
             L +NPL C C L      
Sbjct: 194 LYLHNNPLECDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 9e-13
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            + NL  L L+ N L T+   +F+ L  L  L L  NHI  VD  AF  +
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.7 bits (155), Expect = 9e-13
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            LS +  +   +  L NL SL+L+HN L  I    F  +P L  L+L  NH+HT+D   F
Sbjct: 50  NLSRLRAEWTPTR-LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108

Query: 68  SGL 70
           S L
Sbjct: 109 SDL 111

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 24 NLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              L L+HN L  +        L  L+SL L  NH++ +   AF  +
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LED 72
            L  L+ L L++N +R +  + F  LP L  L LD N + +V    F          L  
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

Query: 73  NPLVCTC-DLMWYKEW 87
           NP  C+C  + +   W
Sbjct: 405 NPWDCSCPRIDYLSRW 420

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.6 bits (142), Expect = 7e-11
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           ++ ++ + V +     +L+ L LA N++  I    F  L  L  L L  N + ++D   F
Sbjct: 286 KIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343

Query: 68  SGL 70
             L
Sbjct: 344 ENL 346

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 13/95 (13%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLR--TIPPRVFAHLPLLNSLELDGNHIHTVDP- 64
           Q   +        GL NL+ L L    L    +    F  L  L  L L  N+I  + P 
Sbjct: 90  QFLQLETGAFN--GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 65  AAFSG--------LEDNPLVCTCDLMWYKEWSTSL 91
           + F          L  N +   C+           
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
            ++ + E       L +L  L +        I    F  L  L  L+LD N    ++  A
Sbjct: 41  SIAELNETS--FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98

Query: 67  FSGL 70
           F+GL
Sbjct: 99  FNGL 102

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            + +  L+ +++  +   VF+H   L  L L  N I+ +D  AF GL
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGL 322

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 5e-09
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPAAFSGL 70
           GL +L  L L +NQ   +    F  L  L  L L   ++    +    F  L
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL 128

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-AFSGL 70
          +++ + L+ N +  +    F+ L  L  L+++      V     F GL
Sbjct: 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGL 78

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 3/68 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDPA 65
            +  I         +     L L  N++++I      +    +   L L    +  ++  
Sbjct: 140 NIKKIQPASFFLN-MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 66  AFSGLEDN 73
                +  
Sbjct: 199 WLGWEKCG 206

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.5 bits (173), Expect = 6e-15
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
                F        L NL  L L+  QL  + P  F  L  L  L +  N + +V    F
Sbjct: 456 SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514

Query: 68  SG--------LEDNPLVCTC-DLMWYKEW 87
                     L  NP  C+C  + +   W
Sbjct: 515 DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 10/50 (20%), Positives = 23/50 (46%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L +L +L+L  N ++++    F+ L  L  L     ++ +++      L
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
               L  L L+  +++TI    +  L  L++L L GN I ++   AFSGL
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGL 70
           GL +L  LV     L ++      HL  L  L +  N I +   P  FS L
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +  +L L+ N LR +    F   P L  L+L    I T++  A+  L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           GL  L+ L   H+ L+ +    VF  L  L  L++   H        F+GL 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           G L  L  L +AHN +++   P  F++L  L  L+L  N I ++       L
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH-TVDPAA 66
            L  + E       L NL  L ++H   R     +F  L  L  L++ GN       P  
Sbjct: 407 NLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 67  FSGLE 71
           F+ L 
Sbjct: 466 FTELR 470

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLP----LLNSLELDGNHIHTVDPAAFSGL 70
             L NL+ L L+ N++++I       L     L  SL+L  N ++ + P AF  +
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTI--PPRVFAHLPLLNSLELDGNHIHTVDPA 65
           +  + F +V     L +L+ L L+ N L       +       L  L+L  N + T+  +
Sbjct: 336 KGGNAFSEV----DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SS 390

Query: 66  AFSGL 70
            F GL
Sbjct: 391 NFLGL 395

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 4/55 (7%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
            +  L +L  L    N+           LP L  L+L  N +        +  G 
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
           +  L +L+L++N+LR IPPR F  L  L  L L GN I  V   AF+ L          N
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

Query: 74  PLVCTCDLMWYKEW 87
           PL C C++ W  +W
Sbjct: 137 PLYCDCNMQWLSDW 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 12/90 (13%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
               I  +      L  L  + L  N L T+P  VF +   L SL L  N I +V+   F
Sbjct: 547 GFDEIPVE--VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604

Query: 68  SG---------LEDNPLVCTCDLM-WYKEW 87
                      +  NP  CTC+ + W+  W
Sbjct: 605 GPAFRNLTELDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 6e-12
 Identities = 15/51 (29%), Positives = 19/51 (37%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L  L  L L HN+L  +  + FA    L  L L  N I  +    F   
Sbjct: 70  QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
               NL  L L  N ++ I    F     L +L+L  N + +        L
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.9 bits (138), Expect = 3e-10
 Identities = 12/51 (23%), Positives = 20/51 (39%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
               L SL +  N +  + P +   LP+L  L L  N +  +    F+  
Sbjct: 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 14/56 (25%), Positives = 20/56 (35%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
               NL +L L+HN L +        L  L  L L  N I  +         ++ L
Sbjct: 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 16/68 (23%), Positives = 27/68 (39%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            L ++    +    L NL  L L++N +  I   +   L  L  L+L  N++  +   A 
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 68  SGLEDNPL 75
            G     L
Sbjct: 525 PGGPIYFL 532

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 19/63 (30%), Positives = 27/63 (42%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           QLS+            NL  L L++N L  +    FA LP L    L+ N+I  +   + 
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 68  SGL 70
            GL
Sbjct: 293 HGL 295

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 17/49 (34%), Positives = 23/49 (46%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            N+  L L HNQLR +P   F     L SL++  N I  ++P     L
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL 72

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPA 65
            LSS   K+ T   L NL  L+L++N+++ +            L  LEL  N I    P 
Sbjct: 132 GLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 66  AFSGL 70
            F  +
Sbjct: 190 CFHAI 194

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD--PAAFSGL 70
            GL N+  + L++N+   +    FA +P L  L L    +  VD  P+ F  L
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 23  HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
            +     ++   L  I    F  L  L  L ++ N I  +    F+GL 
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 10  SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL--LNSLELDGNHIHTVDPAAF 67
            S+ EK+       ++ +L L+++QL T     F  L    L  L+L  N+++ V   +F
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268

Query: 68  SGL 70
           + L
Sbjct: 269 AWL 271

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 11/67 (16%), Positives = 23/67 (34%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           ++ ++  +        +L  L L+ NQ++   P  F  +  L  L L+   +        
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 68  SGLEDNP 74
                N 
Sbjct: 216 CLELANT 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             + +L  L+L    L+ +   P  F  L  L  L+L  N+I  ++     GLE
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 7e-08
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L +L+ L L  N++ + +  + +  L  +  + L  N    +   +F+ +
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH--IHTVDPAAFSGLEDNPL 75
             L  L+ L +  N +  I   +F  L  L  L L  +   + T+    F  L  +PL
Sbjct: 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN---------HIHTVDPAAFSGL 70
             L  L+   L +N ++ +       L  +  L L  +          +  +D  +F  L
Sbjct: 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VDPAA 66
            L ++  +   S     L  L L  N++  I    F+ L  L  L+L  N I   +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 67  FSGL 70
           + GL
Sbjct: 426 WRGL 429

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 8/59 (13%)

Query: 20  GGLHNLDSLVLAHNQLRTI--------PPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            GL  L+ L L HN L  +        P      L  L+ L L+ N    +    F  L
Sbjct: 501 EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFA---HLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
             +  L  L L + QL                + +L L  + + T     F GL+   L 
Sbjct: 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHN--QLRTIPPRVFAHLPL--LNSLELDGNHIHTVD 63
            +  I        GL NL  L L+++   LRT+    F  L    L+ L L  N I  ++
Sbjct: 340 DIPGIKSN--MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397

Query: 64  PAAFSGLE 71
             AFS L 
Sbjct: 398 SDAFSWLG 405

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          + +    +H +L  +P  +  +   +  L L  N +  +  A F+  
Sbjct: 5  SHEVADCSHLKLTQVPDDLPTN---ITVLNLTHNQLRRLPAANFTRY 48

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.1 bits (164), Expect = 9e-14
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 17/89 (19%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            L S          L  L  L ++ N+L+T+P       P+L  +++  N + +V    F
Sbjct: 442 NLDSFSL------FLPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIF 493

Query: 68  SG--------LEDNPLVCTCDLMWY-KEW 87
                     L  NP  C+C  + Y   W
Sbjct: 494 DRLTSLQKIWLHTNPWDCSCPRIDYLSRW 522

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             NL  L+L  +++ TI    F  L  L  L+L  NH+ ++  + F  L
Sbjct: 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 1e-09
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGL 70
            L +L+ L L+ N L ++    F  L  L  L L GN   T+   + F  L
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 9/50 (18%), Positives = 18/50 (36%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL +L+ L +    LR    +    +  ++ L L  +    +       L
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           + SL L+ N++  I          L  L L  + I+T++  AF  L
Sbjct: 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 20  GGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL +L + +      I    FA L  LN LE+    +      +   +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 8   QLSSI-FEKVATSGGLHNLDSLVLAHNQLRTIP--PRVFAHLPLLNSLELDGNHIHTVDP 64
            +     +  A  G   +L +LVL+ N LR++     +   L  L SL++  N  H + P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-P 403

Query: 65  AAFSGLE 71
            +    E
Sbjct: 404 DSCQWPE 410

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            L      V     L  +  + + ++++  +P     HL  L  L+L  N +        
Sbjct: 297 YLFYDLSTV--YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNS 354

Query: 68  SGLEDNPLVCTCDL 81
           +     P + T  L
Sbjct: 355 ACKGAWPSLQTLVL 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 6/47 (12%), Positives = 17/47 (36%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            +  L +    L      V++ L  +  + ++ + +  V  +    L
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDG-NHIHTVDPAAFSGL 70
           G L +L  L L  N  +T+    +F +L  L +L +        +    F+GL
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 7/52 (13%), Positives = 17/52 (32%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             + ++  L L  ++   +       L  +  LEL   ++     +     E
Sbjct: 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 5/55 (9%)

Query: 21  GLHNLDSLVLAHNQLRTIP---PRVFAHLPLLNSLELDGNHIHTVDPAA--FSGL 70
            L +L+ L L+ N +              P L +L L  NH+ ++         L
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
            L +L  L L +NQL+ +P   F  L  L +L+LD N +  V   AF  LE        +
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 73  NPLVCTC-DLMWYKEW 87
           NP  CTC  +++  +W
Sbjct: 215 NPWDCTCNGIIYMAKW 230

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           +LSS+  K      L  L  L L  N+L+T+P  +F  L  L +L +  N +  +    F
Sbjct: 48  KLSSLPSKAFH--RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVF 105

Query: 68  SGL 70
             L
Sbjct: 106 DQL 108

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           +L ++   V     L NL  L L  NQL+++PPRVF  L  L  L L  N + ++    F
Sbjct: 96  KLQALPIGVFD--QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 68  SGL 70
             L
Sbjct: 154 DKL 156

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L NL++L +  N+L+ +P  VF  L  L  L LD N + ++ P  F  L
Sbjct: 83  ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +   L L  N+L ++P + F  L  L  L L+ N + T+    F  L
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.8 bits (158), Expect = 5e-13
 Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 12/145 (8%)

Query: 18  TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----D 72
               L  L  L L  N+L  +          L  L++  N +   +P  F  L       
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITH 556

Query: 73  NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEGE 132
           N  +C C+L  +  W                              + L  L  +   E E
Sbjct: 557 NKFICECELSTFINW-----LNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEE 611

Query: 133 KGGRRSPNSAPSASLSGSFIALLVA 157
                  +     +++ +   + + 
Sbjct: 612 VLKSLKFSLFIVCTVTLTLFLMTIL 636

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D 72
           GL NL  L L++N L  +    F  LP +  ++L  NHI  +    F  LE        D
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 73  NPLVCTCDLMWYKE 86
           N L     +    +
Sbjct: 372 NALTTIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIHTVDPAA 66
            LS    K      L  L  L L+ NQ+R++     F  L  L S++   N I  V    
Sbjct: 108 GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167

Query: 67  FSGLEDNPL 75
              L+   L
Sbjct: 168 LEPLQGKTL 176

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 9  LSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI-HTVDPAAF 67
          L+ + +       L+  + L+L+ N +RT+    F  L  L  LEL   +   T+D  AF
Sbjct: 16 LTQVPQ------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAF 69

Query: 68 SGL 70
            L
Sbjct: 70 RNL 72

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 16/63 (25%), Positives = 26/63 (41%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +    +         ++  L L+H  + ++  RVF  L  L  L L  N I+ +   AF
Sbjct: 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF 310

Query: 68  SGL 70
            GL
Sbjct: 311 YGL 313

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L +L  L LA+N++  I    F  L  L  L L  N +  +  + F GL
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 21 GLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           L  L  L L       TI    F +LP L  L+L  + I+ + P AF GL
Sbjct: 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPAAFSGL 70
            L NL  L L  +++  + P  F  L  L  L L    +    +    F  L
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLR-----TIPPRVFAHLPLLNSLELDGNHIHTV 62
           + SS      T     +L+ L L  N L+      +   VF  L  L  L L+ N+++++
Sbjct: 437 RFSSC-SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 63  DPAAFSGLE 71
            P  FS L 
Sbjct: 496 PPGVFSHLT 504

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 21  GLHNLDSLVLAHNQLR--TIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGL 70
           GL +L  L L    L    +    F +L  L  L+L  N I ++    +F  L
Sbjct: 95  GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLN--SLELDGNHIHTVDPAAFSGL 70
            H++       + ++      FA L   +   L+L    + +++   F  L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHL--PLLNSLELDGNHIHTVDPAAFSGL 70
           G L++L S+  + NQ+  +       L    L+   L  N +++     +   
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 6/56 (10%)

Query: 21  GLHNLDSLVLAHNQLRTIPPR-VFAHLPLLNSLELDGNHIH-----TVDPAAFSGL 70
            + +L  L+L  N+  +       +  P L  L L  N +       +    F GL
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 23/156 (14%), Positives = 45/156 (28%), Gaps = 12/156 (7%)

Query: 17  ATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE----- 71
                +  L  L L+HN L  +          L +L LD N I T+  +    L+     
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 353

Query: 72  DNPLVCTCDLMWYKEWSTSLGEKEDEQ-----MSRKRTVCTLGSSNVHQREIKLSDLPKQ 126
            N   C      ++  +    +  D+             C         R ++   L   
Sbjct: 354 HNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTS- 412

Query: 127 LVCEGEKGGRRSPNSAPSASLSGSFIALLVAAADLV 162
           +V + ++   R   +    S+      +       +
Sbjct: 413 VVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPL 448

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              H +  L +  N +R +PP VF ++PLL  L L+ N + ++    F   
Sbjct: 96  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 146

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 5e-11
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          L+N   +   ++ +R +P  +      +  L L+   I  +D  AF+  
Sbjct: 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            +  L  LVL  N L ++P  +F + P L +L +  N++  ++   F   
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           +      +  +    A       ++ L L   Q+  I    FA+   +  L +  N I  
Sbjct: 56  VTFKNSTMRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY 113

Query: 62  VDPAAFSGL 70
           + P  F  +
Sbjct: 114 LPPHVFQNV 122

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
                L +L +++N L  I    F     L +L+L  N +  VD +    L 
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 195

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 4e-09
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
                L  + L++N+L  I    F  +  L  L +  N +  +       +
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 300

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 9e-08
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            ++ +            L  L L HN L         + P L  ++L  N +  +    F
Sbjct: 222 SINVV-----RGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 68  SGL 70
             +
Sbjct: 275 VKM 277

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 16/67 (23%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHL----------------PLLNSLELDGNHIHTVDP 64
              +L +L L+ N+L  +   +   L                  +  L+   N I+ V  
Sbjct: 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 228

Query: 65  AAFSGLE 71
                L 
Sbjct: 229 PVNVELT 235

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 17  ATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE----- 71
                +  L  L L+HN L  +          L +L LD N I T+  +    L+     
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQP-QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 347

Query: 72  DNPLVCTCDLMWYKEWS 88
            N   C      ++  +
Sbjct: 348 HNDWDCNSLRALFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            +  L  LVL  N L ++P  +F + P L +L +  N++  ++   F   
Sbjct: 115 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              H +  L +  N +R +PP VF ++PLL  L L+ N + ++    F   
Sbjct: 90  AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT 140

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
                ++ L L   Q+  I    FA+   +  L +  N I  + P  F  +
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 10/49 (20%), Positives = 21/49 (42%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          L+N   +   ++ +R +P  +      +  L L+   I  +D  AF+  
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 13/52 (25%), Positives = 21/52 (40%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
                L +L +++N L  I    F     L +L+L  N +  VD +    L 
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF 189

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
                L  + L++N+L  I    F  +  L  L +  N +  +       +
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 7e-08
 Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            ++ +            L  L L HN L         + P L  ++L  N +  +    F
Sbjct: 216 SINVV-----RGPVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 68  SGL 70
             +
Sbjct: 269 VKM 271

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 16/67 (23%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLN----------------SLELDGNHIHTVDP 64
              +L +L L+ N+L  +   +   L   N                 L+   N I+ V  
Sbjct: 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRG 222

Query: 65  AAFSGLE 71
                L 
Sbjct: 223 PVNVELT 229

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           GL +L +LVL +N++  I  + F+ L  L  L +  NH+  + P   S L 
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV 126

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 19  SGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
                 L+ L L HN+++ I          L  L L  N I  ++  + S L
Sbjct: 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
               L  L L HNQ+R I     + LP L  L LD N +  V PA    L
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDL 263

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           ++S I EK  +   L  L  L ++ N L  IPP + +    L  L +  N I  V    F
Sbjct: 89  KISKIHEKAFS--PLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGVF 143

Query: 68  SGLE 71
           SGL 
Sbjct: 144 SGLR 147

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           +   L L +N +  +    F  L  L +L L  N I  +   AFS L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDN 73
            L  L  L L +N+L  +P      L LL  + L  N+I  V    F  +   
Sbjct: 239 FLPTLRELHLDNNKLSRVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFG 290

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 5e-09
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH--TVDPA 65
            L  I           +L  L +  N++R +P  VF+ L  +N +E+ GN +     +P 
Sbjct: 113 HLVEI-----PPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPG 167

Query: 66  AFSGL 70
           AF GL
Sbjct: 168 AFDGL 172

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 8/58 (13%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHL------PLLNSLELDGNHI--HTVDPAAFSGL 70
            L  L  + L  N +  +    F  +         N + L  N +    V PA F  +
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L+ L ++  +L  IP  +      LN L LD N I  ++       
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRY 216

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 21  GLHNLDSLVLAHNQLR--TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           GL N++ + +  N L      P  F  L L   L +    +  +       L 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLN-YLRISEAKLTGIPKDLPETLN 196

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 6/56 (10%)

Query: 8   QLSSI----FEKVATSGGLHNLDSLVLAHNQL--RTIPPRVFAHLPLLNSLELDGN 57
            ++ +    F  V         + + L +N +    + P  F  +    +++    
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 8e-12
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
              +  L L  N++++IP +V   L  L  L +  N + +V    F          L  N
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

Query: 74  PLVCTCDLMWY-KEW 87
           P  C+C  + Y   W
Sbjct: 479 PWDCSCPRIDYLSRW 493

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 8e-08
 Identities = 9/47 (19%), Positives = 16/47 (34%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              L ++ N +  +       L  L  L +  N I  +D + F   
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN 68

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 4e-07
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 8  QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           +S ++        L  L  L+++HN+++ +   VF     L  L+L  N +  +     
Sbjct: 32 YISELWTSDIL--SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT 89

Query: 68 SGL 70
            L
Sbjct: 90 VNL 92

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 7e-07
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAA 66
           +L  I     +     NL  L L+ N    +P  + F ++  L  L L   H+       
Sbjct: 80  KLVKI-----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 67  FSGLEDNPL 75
            + L  + +
Sbjct: 135 IAHLNISKV 143

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA--FSGL 70
             +     L  ++N L         HL  L +L L  N +  +   A   + +
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.1 bits (104), Expect = 7e-06
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPA 65
            L+    +    G L  L++L+L  NQL+ +     +   +  L  L++  N +   +  
Sbjct: 335 LLTDTVFEN--CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392

Query: 66  -AFSGLE 71
              S  +
Sbjct: 393 GDCSWTK 399

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
            L NL +L+L +N++  I P  FA L  L  L L  N +  +       L+
Sbjct: 74  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ 124

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +++I       G   +L  L L  N++  +       L  L  L L  N I  VD  + 
Sbjct: 182 NITTI-----PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236

Query: 68  SGL 70
           +  
Sbjct: 237 ANT 239

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           GL+NL  L L+ N +  +     A+ P L  L L+ N +  V P   +  
Sbjct: 214 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADH 262

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 21  GLHNLDSLVLAHNQLRT--IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           GL+ +  + L  N L++  I    F  +  L+ + +   +I T+       L 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 195

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           G+  L  + +A   + TIP  +      L  L LDGN I  VD A+  GL
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKITKVDAASLKGL 215

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT--VDPA 65
           QL  +            L  L +  N++  +   VF  L  +  +EL  N + +  ++  
Sbjct: 111 QLKEL-----PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 66  AFSGL 70
           AF G+
Sbjct: 166 AFQGM 170

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +   L L +N++  I    F +L  L++L L  N I  + P AF+ L
Sbjct: 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 99

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           ++S I         L  L+ L L+ NQL+ +P ++      L  L +  N I  V  + F
Sbjct: 87  KISKISPGAFA--PLVKLERLYLSKNQLKELPEKMPKT---LQELRVHENEITKVRKSVF 141

Query: 68  SGL 70
           +GL
Sbjct: 142 NGL 144

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
              +L  L L +N+L  +P    A    +  + L  N+I  +    F
Sbjct: 238 NTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDF 283

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 8/58 (13%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFA------HLPLLNSLELDGNHIHT--VDPAAFSGL 70
               +  + L +N +  I    F            + + L  N +    + P+ F  +
Sbjct: 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 8   QLSSI----FEKVATSGGLHNLDSLVLAHNQLRT--IPPRVFAHLPLLNSLELDGN 57
            +S+I    F     +    +   + L  N ++   I P  F  + +  +++L   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 17/50 (34%), Positives = 26/50 (52%)

Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              L  L L+  +++TI    +  L  L++L L GN I ++   AFSGL
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 16/93 (17%)

Query: 8   QLSSIFEKVATSGGLHNLD----SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
           ++ SI+        LH +     SL L+ N +  I P  F  +  L  L LD N + +V 
Sbjct: 160 KIQSIYCTDLR--VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 216

Query: 64  PAAFSG--------LEDNPLVCTC-DLMWYKEW 87
              F          L  NP  C+C  + +   W
Sbjct: 217 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 11/63 (17%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           ++ +I +       L +L +L+L  N ++++    F+ L  L  L     ++ +++    
Sbjct: 63  EIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120

Query: 68  SGL 70
             L
Sbjct: 121 GHL 123

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 7e-11
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDPAA 66
            L+S+       G L  L  L +AHN +++   P  F++L  L  L+L  N I ++    
Sbjct: 111 NLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 67  FSGL 70
              L
Sbjct: 169 LRVL 172

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAA 66
            + S+   +    GL +L  LV     L ++      HL  L  L +  N I +   P  
Sbjct: 87  PIQSL--ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 67  FSGL 70
           FS L
Sbjct: 145 FSNL 148

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +  +L L+ N LR +    F   P L  L+L    I T++  A+  L
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              NL +LVL  N + TI    F+ L  L  L+L  N++  +  + F  L
Sbjct: 74  RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 4e-11
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
             + I  K     GL  L+ L +  + L++  P+    +  ++ L L       +     
Sbjct: 161 TFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFV 218

Query: 68  SGL 70
              
Sbjct: 219 DVT 221

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 7e-11
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA-AFSGL 70
            L +L+ L L++N L  +    F  L  L  L L GN   T+     FS L
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           + SL L++N++  I          L +L L  N I+T++  +FS L
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL 99

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 7e-10
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 17/90 (18%)

Query: 11  SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           S+F+ +     +  L  L  + NQL+++P  +F  L  L  + L                
Sbjct: 265 SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT-------------- 310

Query: 71  EDNPLVCTC-DLMWYKEWSTSLGEKEDEQM 99
             NP  C+C  + +   W     +KE    
Sbjct: 311 --NPWDCSCPRIDYLSRWLNKNSQKEQGSA 338

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
              ++ E  +    L  L  L + +      I  + FA L  L  LE+D + + + +P +
Sbjct: 135 PYKTLGET-SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 67  FSGL 70
              +
Sbjct: 194 LKSI 197

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 9e-08
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           +EI    L S   K      + N+  L+L   Q   +          +  LEL    + T
Sbjct: 179 LEIDASDLQSYEPKSLK--SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

Query: 62  VDPAAFSGLEDNPLVCTCDL 81
              +  S  E N L+     
Sbjct: 237 FHFSELSTGETNSLIKKFTF 256

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 4e-11
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 11/89 (12%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           QL S+   V     L  L  L L  NQL++IP   F  L  L +L L  N + +V   AF
Sbjct: 118 QLKSLPSGVFDR--LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175

Query: 68  SG--------LEDNPLVCTC-DLMWYKEW 87
                     L  N   C+  ++++  +W
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCEILYLSQW 204

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.8 bits (109), Expect = 1e-06
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            L+++ +      GL  L  L L +NQL+T+   VF  L  L +L L  N + ++    F
Sbjct: 46  GLATLSDATFR--GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVF 103

Query: 68  SGL 70
             L
Sbjct: 104 DHL 106

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L  L +L LA+NQL ++P  VF HL  L+ L L GN + ++    F  L
Sbjct: 81  DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL 130

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 14/45 (31%), Positives = 18/45 (40%)

Query: 26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          + L L    L T+    F  L  L  L LD N + T+    F  L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL 82

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 24/117 (20%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
           +   LVL  N L  +PP +   LP L +  L                  NP  C C L+ 
Sbjct: 32  DTTELVLTGNNLTALPPGLLDALPALRTAHLGA----------------NPWRCDCRLVP 75

Query: 84  YKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKGGRRSP 139
            + W         E+   +   C    +    R   L  L + +L      G   S 
Sbjct: 76  LRAWLAGRP----ERAPYRDLRC---VAPPALRGRLLPYLAEDELRAACAPGPLSSH 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +S +     +        ++ LA+N++  +          +  L+L  N I TV+ A  
Sbjct: 110 NISRV-----SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 68  SGLEDN 73
           +   D 
Sbjct: 165 AASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 12/116 (10%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDN 73
              L +L L+ N+L  + P  F     +  + L  N +  +   A           L  N
Sbjct: 190 FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN 247

Query: 74  PLVCTCDLMWYKEWS--TSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQL 127
              C     ++ +     ++ ++  ++++ +        +  H       DLP   
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF 303

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 6/49 (12%), Positives = 16/49 (32%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           +      +  + L+     +      +  L+L GN +  +  A  +  
Sbjct: 9  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
              N+  L L+ N L  I     A    L  L L  N ++         L
Sbjct: 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--LDLESL 79

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 10/63 (15%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +  +           ++++L  A+N +  +            ++ L  N I  +     
Sbjct: 91  YVQEL-------LVGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDE 140

Query: 68  SGL 70
              
Sbjct: 141 GCR 143

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L  L +L L +N ++ +        P + +L    N+I  V  +   G +
Sbjct: 77  ESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK 123

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 9/64 (14%), Positives = 14/64 (21%)

Query: 7   GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAA 66
           GQ S                 +     Q RT+  +V        +LE     +       
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 67  FSGL 70
               
Sbjct: 380 RRAH 383

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
                +  + L +N+L  I          L   +L GN  H      F
Sbjct: 211 QSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
               L+ L L+ N L          L  L +L+L+ N++  +  
Sbjct: 55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGLEDN 73
            L NL  L++++  ++ +P     H      L++  N +IHT++  +F GL   
Sbjct: 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 5e-09
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            + +I E+ +  G       L L  N ++ I    F    L      D N++  +    F
Sbjct: 140 NIHTI-ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF 198

Query: 68  SGLED 72
            G   
Sbjct: 199 HGASG 203

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI-HTVDPAAFSGL 70
          N   L     +LR I    F+    L  +E+  N +   ++   FS L
Sbjct: 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL 78

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 21  GLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L  L  + +   N L  I P  F +LP L  L +    I  +        
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 27/97 (27%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------- 71
           G    +  +  +N L  +P  VF        L++    IH++       L+         
Sbjct: 176 GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235

Query: 72  ------------------DNPLVCTCDLMWYKEWSTS 90
                               P  C     W ++ S  
Sbjct: 236 LKKLPTLEKLVALMEASLTYPSHCCAFANWRRQISEL 272

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 21  GLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLEL-DGNHIHTVDPAAFSGL 70
           G  +L+ + ++ N  L  I   VF++LP L+ + +   N++  ++P AF  L
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +S +     +        ++ LA+N++  +          +  L+L  N I TV+ A  
Sbjct: 110 NISRV-----SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 68  SGLEDN 73
           +   D 
Sbjct: 165 AASSDT 170

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 7e-09
 Identities = 6/49 (12%), Positives = 16/49 (32%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           +      +  + L+     +      +  L+L GN +  +  A  +  
Sbjct: 9  GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF 57

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 17/150 (11%), Positives = 44/150 (29%), Gaps = 35/150 (23%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD---- 63
           ++ ++      +     L+ L L +N +  +  +V      L +L+L  N +  +     
Sbjct: 155 EIDTV-NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQ 211

Query: 64  ------------------PAAFSG--------LEDNPLVCTCDLMWYKEWS--TSLGEKE 95
                               A           L  N   C     ++ +     ++ ++ 
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271

Query: 96  DEQMSRKRTVCTLGSSNVHQREIKLSDLPK 125
            ++++ +        +  H       DLP 
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             N+  L L+ N L  I     A    L  L L  N ++         L
Sbjct: 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 10/63 (15%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +  +           ++++L  A+N +  +            ++ L  N I  +     
Sbjct: 91  YVQEL-------LVGPSIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDE 140

Query: 68  SGL 70
              
Sbjct: 141 GCR 143

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L  L +L L +N ++ +        P + +L    N+I  V  +   G +
Sbjct: 77  ESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRGQGKK 123

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 1/104 (0%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC 79
                +  + L +N+L  I          L   +L GN  H      F            
Sbjct: 211 QSAAGVTWISLRNNKLVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

Query: 80  DLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDL 123
             +                       C    +    R I L   
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
               L+ L L+ N L          L  L +L+L+ N++  +  
Sbjct: 55 APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV 97

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
          +  +L L    LRTIP   F++LP ++ + +  +  +  ++  +F  L
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 21  GLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGL 70
            L N+  + ++ +  L+ +    F +L  +  +E+    ++  +DP A   L
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 21  GLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAAFSGLE 71
            L  +  + + + + L  I P     LPLL  L +    +    D       +
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTD 130

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHLP-LLNSLELDGNHIHTVDPA 65
            L    +             L +  N  + +IP   F  L     +L+L  N   +V   
Sbjct: 116 GLKMFPDLTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGY 174

Query: 66  AFSGL 70
           AF+G 
Sbjct: 175 AFNGT 179

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLEL-DGNHIHTVDPAAFSGL 70
            L  L  L + +  L+  P     +   +   LE+ D  ++ ++   AF GL
Sbjct: 103 ELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 21  GLHN-LDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIHTVDPAAFSGLEDNP 74
           GL N   +L L +N   ++    F    L  ++ L+ N ++  +D  AF G+   P
Sbjct: 153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLD-AVYLNKNKYLTVIDKDAFGGVYSGP 207

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 24  NLDSLVLAHNQ-LRTIPPRVFAHLP-LLNSLELDGNHIHTVDPAAFSGLE 71
            LD++ L  N+ L  I    F  +    + L++    +  +       L+
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 24  NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDNPL 75
            +  L L +N++ +IP  V  HL  L  L +  N + +V    F          L DNP 
Sbjct: 451 KVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

Query: 76  VCTC-DLMWYKEW 87
            CTC  + +  EW
Sbjct: 510 DCTCPGIRYLSEW 522

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPL 75
            L  L  L L+HN++R++   VF     L  L++  N +  +     + L       N  
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDF 133

Query: 76  VC 77
             
Sbjct: 134 DV 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 11/47 (23%), Positives = 18/47 (38%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             +L L+ N +  +     + L  L  L L  N I ++D   F   
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN 99

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPAA 66
           +L +I     +   + +L  L L+ N    +P  + F +L  L  L L       +D   
Sbjct: 111 RLQNI-----SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 67  FSGLE 71
            + L 
Sbjct: 166 VAHLH 170

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 8/49 (16%), Positives = 13/49 (26%)

Query: 19  SGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
                +   L    N       +  + L  L +L L  N +      A 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL 397

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 19/93 (20%)

Query: 8   QLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
           Q+ S    +F+K      L  L  L L  N+L+++P  VF  L  L  L LD N + +V 
Sbjct: 63  QIQSLPDGVFDK------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

Query: 64  PAAFSGLE--------DNPLVCTC-DLMWYKEW 87
              F  L          NP  C+C  + +   W
Sbjct: 117 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 149

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           L  L  L L+ NQ++++P  VF  L  L  L L  N + ++    F  L
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKL 99

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 9/65 (13%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG---------L 70
           G    L  L L +NQ+  IP    A    +  L    N +  +     +           
Sbjct: 592 GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 71  EDNPL 75
             N +
Sbjct: 652 SYNKI 656

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 8/68 (11%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN-----SLELDGNHIHTV 62
           +L  I   +  +  ++ + S+  ++N++ +    +   +         ++ L  N I   
Sbjct: 630 KLKYI-PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 63  DPAAFSGL 70
               F+  
Sbjct: 689 PTELFATG 696

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 11/69 (15%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 8   QLSSIFEKVATSGG---LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
           ++ S    ++ S       N  ++ L++N+++  P  +FA    ++++ L  N + ++  
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714

Query: 65  AAFSGLEDN 73
            +    + N
Sbjct: 715 NSLKPKDGN 723

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLED 72
             +  L  L   HN++R +    F     L  L+LD N I  +     +  + 
Sbjct: 570 QKMVKLGLLDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNHIHTVDPAA 66
           Q+  I E          ++ L  +HN+L+ IP    A  + ++ S++   N I +     
Sbjct: 606 QIEEIPEDF--CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 67  FSGLEDNPLV 76
              ++D   +
Sbjct: 664 SCSMDDYKGI 673

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFA-----HLPLLNSLELDGNHIHTV 62
           +L+S+ +    +  L  L ++ +++N   + P +           + +  + +GN I   
Sbjct: 739 KLTSLSDDFR-ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797

Query: 63  DPAAFSGL 70
            P   +  
Sbjct: 798 WPTGITTC 805

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 17/76 (22%), Positives = 22/76 (28%), Gaps = 8/76 (10%)

Query: 8   QLSSIFEKVATSGGLHNLD---SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             SS   +   S  L             N++    P      P L  L++  N I  VD 
Sbjct: 764 CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823

Query: 65  AAFSGLE-----DNPL 75
                L      DNP 
Sbjct: 824 KLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 8   QLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHT 61
            ++SI E             + L ++ L  N+L ++        LP L+++++  N   +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 62  VDPAAFSGL 70
             P      
Sbjct: 768 F-PTQPLNS 775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 10/76 (13%), Positives = 18/76 (23%), Gaps = 19/76 (25%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +  + EK+        L  L +A N   +I               L  +          
Sbjct: 817 DIRKVDEKL-----TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK--------- 862

Query: 68  SGLEDNPLVCTCDLMW 83
                   +  CD + 
Sbjct: 863 -----TQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 11/49 (22%), Positives = 16/49 (32%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS 68
             L +L  + L +    T  P     LP L SL +  N   +       
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 10/61 (16%)

Query: 20  GGLHNLDSLVLAHNQLRTIP---------PRVFAHLPLLNSLELDGNHIHTV-DPAAFSG 69
             L  L SL +A N+  +                  P +    +  N++      A+   
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 70  L 70
           +
Sbjct: 572 M 572

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 9/75 (12%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
           L NL  L    N+L  IP  VF  L  L  L+L+ NH+ ++   AF  L+        +N
Sbjct: 56  LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

Query: 74  PLVCTC-DLMWYKEW 87
           P  C C D+M+ + W
Sbjct: 116 PWDCECRDIMYLRNW 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 31/93 (33%), Positives = 40/93 (43%), Gaps = 19/93 (20%)

Query: 8   QLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
           QL S    +F+K      L  L  L L  NQL+++P  VF  L  L  L L  N + +V 
Sbjct: 87  QLQSLPNGVFDK------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

Query: 64  PAAFSGLE--------DNPLVCTC-DLMWYKEW 87
              F  L         DNP  CTC  + +  EW
Sbjct: 141 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 173

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           L +L  L L+ NQL+++P  VF  L  L  L L+ N + ++    F
Sbjct: 75  LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF 120

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%)

Query: 21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           L +L  L L  N+L+++P  VF  L  L  L L  N + ++    F  L
Sbjct: 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN 73
           L  L  L L +NQL  +P  VF  L  L  L L+ N + ++   AF  L+        +N
Sbjct: 53  LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

Query: 74  PLVCTC-DLMWYKEW 87
           P  C C D+++   W
Sbjct: 113 PWDCACSDILYLSRW 127

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
              L L  NQ+  + P VF  L  L  L+LD N +  +    F
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVF 74

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 8e-08
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 8   QLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV 62
           ++ S+  K             N+ S+ L++NQ+   P  +F+    L+S+ L GN +  +
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 63  DPAAFSGLEDN 73
              +     +N
Sbjct: 473 PKNSLKDENEN 483

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
           G    L SL LA+NQ+  IP         + +L    N +  +     + 
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 3/72 (4%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAH-LPLLNSLELDGNHIHTVDPAA 66
           Q++ I       G    +++L  AHN+L+ IP    A  + ++++++   N I +VD   
Sbjct: 364 QITEI--PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 67  FSGLEDNPLVCT 78
           F  L+  P    
Sbjct: 422 FDPLDPTPFKGI 433

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 6   GGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHTVDP 64
           G QL   ++ +A +     +  + + +N L+T P       +  L  LE   N +     
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-L 346

Query: 65  AAFSGL 70
            AF   
Sbjct: 347 PAFGSE 352

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPL-------LNSLELDGNHIH 60
           +L  I   +  +  +  + ++  ++N++ ++  + F  L         ++S+ L  N I 
Sbjct: 388 KLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 61  TVDPAAFSGL 70
                 FS  
Sbjct: 447 KFPKELFSTG 456

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPL 75
           G    +      N+     P      P L  L++  N I  V+      +      DNP 
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN 599

Query: 76  VCT 78
           +  
Sbjct: 600 ISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 5/64 (7%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
            +  + EK+       N+  L +  N   +I               L  +    +     
Sbjct: 577 DIRKVNEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

Query: 68  SGLE 71
             ++
Sbjct: 632 LDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 8   QLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHT 61
            L+ I +             + L S+ L  N+L  +        LP L  ++L  N    
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

Query: 62  VDPAAFS 68
                 +
Sbjct: 528 FPTQPLN 534

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LE 71
             L  L  L +  NQ+  I      +L  LNSL L+ N +   D     G        L 
Sbjct: 262 KDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319

Query: 72  DNPL 75
            N +
Sbjct: 320 QNHI 323

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 8e-07
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L  L+SL L +NQL      V   L  L +L L  NHI  + P   + L
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL 332

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             +  L+ L +  ++++ + P   A+L  L SL L+ N I  + P   + L
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASL 198

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L +L SL L +NQ+  I P   A L  L+      N I  + P   + +
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM 220

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 4/52 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L  L  L +  NQ+  I       L  L  L +  N I  +     + L 
Sbjct: 240 ANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQISDISV--LNNLS 287

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL  L L  + +  I P   A+L  + SL L  NH  + D +  S +
Sbjct: 107 QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNM 154

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             +  L+SL + +N++  + P   A+L  L  LE+  N I  ++ 
Sbjct: 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA 260

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 8e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL+ L L  NQ+  I P   ++L  L +L +  N I  +       L
Sbjct: 63  EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNL 109

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI 59
           GGL NL +L L+ N +  I P   A L  ++S +     I
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L  L +L +  N++  I      +L  L  L L+ ++I  + P   + L
Sbjct: 85  SNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANL 131

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L  + SL L  N   +      +++  LN L +  + +  V P   + L
Sbjct: 129 ANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANL 176

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L ++  LV+A  ++ +I      +L  L  L L+GN I  + P   S L
Sbjct: 41 EELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP--LSNL 87

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 8e-07
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 19/93 (20%)

Query: 8   QLSS----IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD 63
           QL S    +F+K      L NL  L L++NQL+++P  VF  L  L  L L  N + +V 
Sbjct: 144 QLQSLPKGVFDK------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197

Query: 64  PAAFSGLE--------DNPLVCTC-DLMWYKEW 87
              F  L         DNP  CTC  + +  EW
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 230

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 8   QLSSI--FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA 65
           +L  I   ++      L NL  L+L  NQL+++P  VF  L  L  L L  N + ++   
Sbjct: 74  KLHDISALKE------LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDG 127

Query: 66  AFSGL 70
            F  L
Sbjct: 128 VFDKL 132

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF 67
           L NL  L LAHNQL+++P  VF  L  L  L+L  N + ++    F
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 19/50 (38%), Positives = 25/50 (50%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L NL  LVL  NQL+++P  VF  L  L  L L  N + ++    F  L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           L N+  L L  N+L  I       L  L  L L GN + ++    F  L
Sbjct: 62  LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKL 108

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L  L SL L HN +  I      HLP L SL L  N I  +     S L
Sbjct: 107 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRL 152

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             L NL  L L  N+++ +       L  L SL L+ N I  ++ 
Sbjct: 84  TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDING 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 8e-06
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L  LD+L L  NQ+  I P   A L  L +L L  NHI  +  
Sbjct: 151 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 192

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L N+  L L  N+L  I P    +L  L  L LD N I  +  
Sbjct: 63  YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS 104

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L  L+SL L +N++  I     + L  L++L L+ N I  + P
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 170

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
           GL  L +L L+ N +  +     A L  L+ LEL             S L     V
Sbjct: 173 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 14 EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
              T   L+++D ++  ++ ++++      +LP +  L L+GN +  + P
Sbjct: 34 TDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP 82

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 2/50 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             HN+  L + +       P   + L  L  L + G  + +      SGL
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGL 111

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 9/51 (17%), Positives = 18/51 (35%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            GL NL+ L +    + +      + L  L  L++  +          + L
Sbjct: 85  SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            GL +L  L ++H+            LP +NS++L  N   T D      L
Sbjct: 109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIMPLKTL 158

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
             L N++ L   HNQ+  + P   A+L  +  L L+            + +     V
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             L  L  L   +N++  +     A+L  +N L    N I  + P
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L+NL  +  ++NQL  I P    +L  L  + ++ N I  + P   + L
Sbjct: 65  EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL  L LA+NQ+  + P   + L  L  L+L  N I  + P   +GL
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL+SL+  +NQ+  I P     L  L+ L L+GN +  +     + L
Sbjct: 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASL 242

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            GL  L  L L  NQ+  I P   A L  L +LEL+ N +  + P
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           G L NLD L L  NQL+ I     A L  L  L+L  N I  + P   SGL
Sbjct: 218 GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGL 264

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L NL  L L +NQ+  I P    +L  LN LEL  N I  +     SGL
Sbjct: 109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGL 155

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            GL  L +L L  NQL  I P   ++L  L  L L  N+I  + P   S L
Sbjct: 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             L  L+ L ++ N++  I     A L  L SL    N I  + P
Sbjct: 174 ANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L  L  +++ +NQ+  I P   A+L  L  L L  N I  +DP     L
Sbjct: 87  KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNL 133

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             L NL  L L  N +  I P   + L  L  L    N +  V  
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 17  ATSGGLHNLDSLVLAHNQLRTIPPRV-FAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           A +     L  L L+HN LR             LNSL L    +  V     + L 
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             NL  L L+HNQ+  + P     L  L  L ++ N +  ++    + L 
Sbjct: 62  FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS 109

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L NL+ L + +N+L++I       L  L  L+L GN I     
Sbjct: 126 HLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG 167

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L  L SL L HN +  I      HLP L SL L  N I  +  
Sbjct: 110 DLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L  LD+L L  NQ+  I P   A L  L +L L  NHI  +  
Sbjct: 154 RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L NL  L L  N+++ +       L  L SL L+ N I  ++ 
Sbjct: 88  NLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING 129

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L N+  L L  N+L  I P   A+L  L  L LD N +  +  
Sbjct: 66  YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS 107

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L  L+SL L +N++  I     + L  L++L L+ N I  + P
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP 173

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLV 76
           GL  L +L L+ N +  +     A L  L+ LEL             S L     V
Sbjct: 176 GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            GL NL  L L  NQ+  I P   A L  L  L +    +  + P
Sbjct: 126 AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP 168

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             L  L +L    N++  I P   A LP L  + L  N I  V P
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            GL NL  L + + Q+  + P   A+L  L +L+ D N I  + P
Sbjct: 148 AGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L  +  L L+ N L+ +     A L  + +L+L    I  V P   +GL
Sbjct: 82  KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGL 128

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
             L+NL  L L  NQ+  + P    +L  +  LEL GN +  V     +GL
Sbjct: 60  QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGL 106

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            GL ++ +L L   Q+  + P   A L  L  L LD N I  + P
Sbjct: 104 AGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
           L  L  L L  NQL  +P  VF  L  L  L +  N +  + P     L
Sbjct: 87  LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERL 134

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 23/50 (46%)

Query: 21  GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
            L NL  L L  NQL  +P  VF  L  L  L+L  N +  +  A F  L
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 17/88 (19%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV-DPAA 66
           +L ++   +A    L  L+ L  + N L  +     A+LP L  L L  N +        
Sbjct: 474 RLRALPPALAA---LRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQP 528

Query: 67  FSG--------LEDNPLVCTCDLMWYKE 86
                      L+ N L   C     +E
Sbjct: 529 LVSCPRLVLLNLQGNSL---CQEEGIQE 553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 14  EKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             +     L  +  L L+HN+LR +PP   A L  L  L+   N +  VD 
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDG 503

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---HTVDP-AAFSGLE-----D 72
           L  L +L++ +N++  I   +   LP L  L L  N +     +DP A+   L       
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 73  NPLVCTCDLMWYKEW 87
           NP+    +   Y+ +
Sbjct: 123 NPV---TNKKHYRLY 134

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 22 LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
          L   D++  + N++R +    F  L  L +L ++ N I  +       L 
Sbjct: 41 LDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALP 88

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
           ++    L L    L ++P  +      +  LE+  N + ++ P   + LE
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPPQ---ITVLEITQNALISL-PELPASLE 103

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 17/114 (14%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPL---LNSLELDGNHIHTVDPAAFSGL-------- 70
             +L++L ++ N L ++P     +              N I  + P     L        
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIIL 237

Query: 71  EDNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP 124
           EDNPL  +  +       T+     D    R     + G  N   R +  +   
Sbjct: 238 EDNPL--SSRIRESLSQQTAQ---PDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 8   QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L  + +         +L+S+V  +N L  +P     +LP L ++  D N + T+  
Sbjct: 206 SLKKLPD------LPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD 254

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 3/52 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
                L+ L    N +  +          L  L+   N +  +D    + L 
Sbjct: 188 SQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEIDVTPLTQLT 236

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
               NL  L    N+L  +       L  L  L  D N +  +D +    L 
Sbjct: 82  SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L  L  L+   N + T+     +    L  L  D N +  +D    + L 
Sbjct: 61  EKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKLT 109

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE 71
             L  L  L    N+L  +     +  PLL  L    N +  +D +  + L 
Sbjct: 103 TPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLT 151

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 3/45 (6%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
                L  L L + +L  +     +H   L SL     HI     
Sbjct: 315 SQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI---HTVDP-AAFSGLE-----D 72
           L  L  L L+ N++      +   LP L  L L GN +    T++P      L+     +
Sbjct: 70  LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

Query: 73  NPLVCTCDLMWYKEW 87
             +    +L  Y+E 
Sbjct: 130 CEV---TNLNDYRES 141

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH---TVDP-AAFSGLE-----D 72
           L+ L  L L+ N++      +    P L  L L GN I    T++P      L+     +
Sbjct: 63  LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

Query: 73  NPLVCTCDLMWYKEW 87
             +    +L  Y+E 
Sbjct: 123 CEV---TNLNDYREN 134

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.0 bits (86), Expect = 8e-04
 Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
          S+  +    +     L+ L   +  L +I       L  L  LEL  N +          
Sbjct: 29 SNEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNRVSGGLEVLAEK 86

Query: 70 LE 71
            
Sbjct: 87 CP 88

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPL 75
              L SL +  NQL  +P     HL    ++ L+GN +      A   +   P 
Sbjct: 260 PSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.81
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.79
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.76
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.71
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.7
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.64
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.27
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.22
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.19
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.14
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.03
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.02
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.01
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.0
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.0
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.94
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.88
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.8
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.74
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.74
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.71
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.71
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.61
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.52
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.46
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.44
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.4
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.32
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.27
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.1
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.98
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.86
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.78
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.66
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.49
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.23
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.2
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.99
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.98
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.33
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.28
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.23
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	94.35
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	94.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.58
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	92.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	92.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	92.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	87.86
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	85.28
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	83.92

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.87  E-value=4.3e-22  Score=142.35  Aligned_cols=119  Identities=30%  Similarity=0.583  Sum_probs=105.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+|+.+++.  .|.++++|+.|+|++|+++.+++.+|.++++|+.|++++|+++.+++..|..+.        +|
T Consensus        59 L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           59 IDLSNNRISTLSNQ--SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCEeCHh--HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            78999999999998  899999999999999999999999999999999999999999999998888766        89


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEG  131 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~  131 (166)
                      ||.|+|++.|+..|++....      ......|..|..   ++|+.+.+++. .+.|..
T Consensus       137 ~~~C~c~l~~l~~~~~~~~~------~~~~~~C~~P~~---l~g~~l~~~~~~~~~~~~  186 (193)
T 2wfh_A          137 PLYCDCNMQWLSDWVKSEYK------EPGIARCAGPGE---MADKLLLTTPSKKFTCAA  186 (193)
T ss_dssp             CEECSGGGHHHHHHHHHSSC------CCSCCBEEESGG---GTTCBTTTSCGGGCCC--
T ss_pred             CeecCCcCHHHHHHHHhccC------CCCCcCcCCchH---HCCCCcccCChHHeeehh
Confidence            99999999999999987432      235689999999   99999999997 666643

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.87  E-value=9.6e-22  Score=160.92  Aligned_cols=120  Identities=20%  Similarity=0.384  Sum_probs=107.2

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC---------
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE---------   71 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~---------   71 (166)
                      .|++++|+++++++.  .|.++++|+.|+|++|+|+.+++..|.++++|+.|++++|+|+++++..|..+.         
T Consensus       498 ~L~Ls~N~L~~l~~~--~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~  575 (635)
T 4g8a_A          498 FLDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  575 (635)
T ss_dssp             EEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECT
T ss_pred             EEECCCCccCCcChH--HHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEee
Confidence            389999999999999  999999999999999999999999999999999999999999999999887663         


Q ss_pred             CCCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCCcccCC
Q psy10386         72 DNPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCE  130 (166)
Q Consensus        72 ~Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~~~~C~  130 (166)
                      +|||.|||++.||.+|+++....   +.+..++.|+.|+.   ++|+++.++.  ..|.
T Consensus       576 ~Np~~C~C~~~~~~~wl~~~~~~---~~~~~~~~C~~P~~---~~g~~l~~~~--~~C~  626 (635)
T 4g8a_A          576 QNDFACTCEHQSFLQWIKDQRQL---LVEVERMECATPSD---KQGMPVLSLN--ITCQ  626 (635)
T ss_dssp             TCCBCCSGGGHHHHHHHHHTTTT---BSCGGGCBBCSSTT---TTTCBGGGCC--CCC-
T ss_pred             CCCCcccCCcHHHHHHHHhCCCc---cCCCCCceeCCchH---HCCCEeeeec--cCCC
Confidence            99999999999999999885543   23456799999999   9999999986  4675

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=1.3e-21  Score=142.44  Aligned_cols=121  Identities=22%  Similarity=0.482  Sum_probs=88.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+|+.+++.  .|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++++++..|..+.        +|
T Consensus        85 L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           85 LVLYGNKITELPKS--LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCHh--HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            56666666666666  666666666666666666666666666677777777777777777766666554        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEK  133 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~  133 (166)
                      ||.|+|++.|+..|++.....      .....|..|..   ++|+.+.+++. ++.|..+.
T Consensus       163 ~~~c~c~l~~l~~~l~~~~~~------~~~~~C~~P~~---l~g~~l~~l~~~~~~c~~~~  214 (220)
T 2v9t_B          163 PFICDCHLKWLADYLHTNPIE------TSGARCTSPRR---LANKRIGQIKSKKFRCSAAA  214 (220)
T ss_dssp             CEECSGGGHHHHHHHHHCCCB------CSCCBEEESGG---GTTCBGGGSCGGGCCC----
T ss_pred             CcCCCCccHHHHHHHHhCCCC------ccCCCcCCchH---HcCCchhhCCHHHCcCcccc
Confidence            999999999999999875422      35588999999   99999999998 88887543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=6.2e-21  Score=136.05  Aligned_cols=121  Identities=30%  Similarity=0.602  Sum_probs=103.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+|+++.+.  .|.++++|+.|++++|+++.+++..|.++++|+.|++++|+++++.+..|..++        +|
T Consensus        59 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           59 LELKRNQLTGIEPN--AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCCBCTT--TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             EECCCCCCCCcCHh--HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            78888888888888  888899999999999999988888888889999999999999888888777665        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEK  133 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~  133 (166)
                      +|.|+|.+.|+..|++.....      .+...|..|..   ++|..+.+++. ++.|..+.
T Consensus       137 ~l~c~c~l~~~~~~l~~~~~~------~~~~~C~~P~~---l~~~~l~~l~~~~~~C~~~~  188 (192)
T 1w8a_A          137 PFNCNCHLAWFAEWLRKKSLN------GGAARCGAPSK---VRDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             CBCCSGGGHHHHHHHHHHCCS------GGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC-
T ss_pred             CccCcCcchHHHHHHHHcCCC------CCCCCCCCChH---HcCCChhhCcHhhcCcCCCC
Confidence            999999999999999875332      34588999999   99999999998 88897543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.83  E-value=2.1e-20  Score=135.96  Aligned_cols=121  Identities=28%  Similarity=0.494  Sum_probs=88.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++.+..|..+.        +|
T Consensus        86 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           86 ILLTSNRLENVQHK--MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             EECCSSCCCCCCGG--GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EECCCCccCccCHh--HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            56666666666666  666666666666666666666666666667777777777777777666666554        89


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEK  133 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~  133 (166)
                      +|.|+|++.|+..|++.....      .....|..|..   ++|..+.+++. +..|..++
T Consensus       164 ~l~c~c~l~~l~~~~~~~~~~------~~~~~C~~P~~---l~g~~l~~l~~~~~~~~~~~  215 (220)
T 2v70_A          164 PFNCNCYLAWLGEWLRKKRIV------TGNPRCQKPYF---LKEIPIQDVAIQDFTCDDAH  215 (220)
T ss_dssp             CEECSGGGHHHHHHHHHSCCB------CCCCEEEESGG---GTTEEGGGSCGGGCCCCC--
T ss_pred             CCcCCCchHHHHHHHHhcCcc------ccCCccCCChH---HCCCChhhCCHHHccccccc
Confidence            999999999999999864321      34579999999   99999999997 66775443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=143.92  Aligned_cols=124  Identities=22%  Similarity=0.447  Sum_probs=105.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+.+.  .|.++++|+.|++++|+++.+++.+|..+++|+.|++++|+++.+++..|..+.        +|
T Consensus       212 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          212 LDLSGNHLSAIRPG--SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred             EECCCCccCccChh--hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence            78999999999998  999999999999999999999999999999999999999999999998887766        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKG  134 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~  134 (166)
                      ||.|||++.|+..|++......    ......|..|..   ++|+.+.+++. .+.|..|..
T Consensus       290 p~~CdC~l~~l~~~~~~~~~~~----~~~~~~C~~P~~---l~g~~l~~l~~~~~~C~~P~i  344 (440)
T 3zyj_A          290 PWNCNCDILWLSWWIKDMAPSN----TACCARCNTPPN---LKGRYIGELDQNYFTCYAPVI  344 (440)
T ss_dssp             CEECSSTTHHHHHHHHTTSCSS----CSCCCBEEESTT---TTTCBCC----CCSCCCCCCE
T ss_pred             CccCCCCchHHHHHHHhccccC----CccccCCCChhH---hcCccHhHhhhhhccCCCCcc
Confidence            9999999999999998753221    234588999999   99999998887 778976543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=4.6e-19  Score=141.10  Aligned_cols=125  Identities=23%  Similarity=0.383  Sum_probs=108.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++++.+.  .|.++++|+.|++++|+++.+++..|.++++|+.|++++|+++++++..|..++        +|
T Consensus       223 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          223 LEMSGNHFPEIRPG--SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             EECTTSCCSEECGG--GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             EECcCCcCcccCcc--cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence            78999999999888  899999999999999999999999999999999999999999999998887766        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKGG  135 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~~  135 (166)
                      ||.|||++.|+..|++......    ......|..|..   ++|+.+.+++. ...|..|...
T Consensus       301 p~~CdC~~~~l~~~l~~~~~~~----~~~~~~C~~P~~---l~g~~l~~~~~~~~~C~~P~i~  356 (452)
T 3zyi_A          301 PWNCDCDILWLAWWLREYIPTN----STCCGRCHAPMH---MRGRYLVEVDQASFQCSAPFIM  356 (452)
T ss_dssp             CEECSTTTHHHHHHHHHHC-------CCSSCBEEESTT---TTTCBTTSCCGGGCCCCCCCCS
T ss_pred             CcCCCCCchHHHHHHHHhCccC----CccCcEeCCchH---hccchhhccchhhhcccCcccc
Confidence            9999999999999998753221    234578999999   99999999887 7789766443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.79  E-value=6.4e-19  Score=123.38  Aligned_cols=106  Identities=24%  Similarity=0.473  Sum_probs=92.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+|+++++.  .|.++++|+.|+|++|+|+.++++.|..+++|++|++++|+|+++++..|..+.        +|
T Consensus        35 L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           35 LYLYDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEcCCCcCCccChh--hhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence            79999999999998  999999999999999999999999999999999999999999999998888776        99


Q ss_pred             CccccCC-cHHHHHHHHhccCCcchh--cccCCceecCC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGEKEDEQ--MSRKRTVCTLG  109 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~~~~~~--~~~~~~~C~~p  109 (166)
                      ||.|+|. +.|+..|++.........  .+.+...|..+
T Consensus       113 ~~~c~c~~l~~l~~~l~~~~~~~~~~~~~~~~~~~C~~~  151 (170)
T 3g39_A          113 PWDCACSDILYLSRWISQHPGLVFGYLNLDPDSARCSGT  151 (170)
T ss_dssp             CBCTTBGGGHHHHHHHHHCGGGEECSSSBCGGGSBBCC-
T ss_pred             CCCCCchhHHHHHHHHHhCcceeeccccCCcccceeCCC
Confidence            9999995 999999999865443211  23557888765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.76  E-value=6.2e-18  Score=118.85  Aligned_cols=107  Identities=25%  Similarity=0.467  Sum_probs=91.5

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------C
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D   72 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~   72 (166)
                      .|++++|+|+++++.  .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|+|+.+++..|..+.        +
T Consensus        37 ~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           37 RLWLNNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             EEEeCCCCccccCHH--HhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            389999999999998  999999999999999999999999999999999999999999999998888776        9


Q ss_pred             CCccccCC-cHHHHHHHHhccCCcc-----hhcccCCceecCC
Q psy10386         73 NPLVCTCD-LMWYKEWSTSLGEKED-----EQMSRKRTVCTLG  109 (166)
Q Consensus        73 Np~~C~C~-l~~l~~~~~~~~~~~~-----~~~~~~~~~C~~p  109 (166)
                      |+|.|+|. +.|+..|++.......     .+.+.+...|..+
T Consensus       115 N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  157 (174)
T 2r9u_A          115 NPWDCECRDIMYLRNWVADHTSIVMRWDGKAVNDPDSAKCAGT  157 (174)
T ss_dssp             SCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECGGGSBBTTT
T ss_pred             CCcccccccHHHHHHHHHhcccccccccccccCCcccCEECCC
Confidence            99999996 9999999988654321     1113456677654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.76  E-value=3.9e-18  Score=131.27  Aligned_cols=104  Identities=25%  Similarity=0.466  Sum_probs=92.8

Q ss_pred             EEecC-CCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CC
Q psy10386          2 IEIWG-GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DN   73 (166)
Q Consensus         2 L~ls~-N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~N   73 (166)
                      |+|++ |+|+.+++.  .|.++++|+.|+|++|+|+.+++.+|..+++|+.|+|++|+|+++++..|..+.       +|
T Consensus        36 L~l~~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           36 LYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             EECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             EEccCCCCCCCcChh--HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCC
Confidence            89996 999999998  999999999999999999999999999999999999999999999999988754       99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                      +|.|+|++.||..|++.....    .+.+.+.|..|..
T Consensus       114 ~~~c~c~l~~~~~~~~~~~~~----l~~~~~~C~~~~~  147 (347)
T 2ifg_A          114 PLHCSCALRWLQRWEEEGLGG----VPEQKLQCHGQGP  147 (347)
T ss_dssp             CCCCCGGGHHHHHHHHTTCSS----CGGGCCCCSSSSC
T ss_pred             CccCCCccHHHHHHHHhCccc----ccccCCCCCCChH
Confidence            999999999999999875332    1346788987764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.72  E-value=2.1e-18  Score=146.74  Aligned_cols=120  Identities=20%  Similarity=0.334  Sum_probs=85.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-----CCCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPLV   76 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-----~Np~~   76 (166)
                      |+|++|+++++++.  .|.++++|+.|+|++|+++.+++..|.  ++|+.|++++|+++++++..|..+.     +|||.
T Consensus       485 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          485 LYLNHNYLNSLPPG--VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI  560 (844)
T ss_dssp             CCCCHHHHTTCCTT--SSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCEEEEEEECCC
T ss_pred             EECCCCcccccChh--HccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCEEEecCCCcc
Confidence            45666666666666  666677777777777777776666554  6677777777777777776666666     89999


Q ss_pred             ccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCCcccCCC
Q psy10386         77 CTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVCEG  131 (166)
Q Consensus        77 C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~~~~C~~  131 (166)
                      |+|++.||..|+.......  .....+..|..|..   ++|.++.+++ ...|..
T Consensus       561 C~c~~~~f~~~~~~~~~~~--~~~~~~~~C~~p~~---~~g~~l~~~~-~~~C~~  609 (844)
T 3j0a_A          561 CECELSTFINWLNHTNVTI--AGPPADIYCVYPDS---FSGVSLFSLS-TEGCDE  609 (844)
T ss_dssp             CSSSCCSHHHHHHHTTTTT--CCCGGGCCCSSCSS---SCSCCTTTCC-CCCC--
T ss_pred             cccccHHHHHHHHhcCccc--ccccccCccCCchh---hCCCccccCc-cccCCc
Confidence            9999999999998643322  12345689999999   8998888877 357764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=3.7e-17  Score=123.47  Aligned_cols=90  Identities=24%  Similarity=0.499  Sum_probs=50.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP   74 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np   74 (166)
                      |++++|+++.++++  .|.++++|+.|++++|+++.++++.|..+++|+.|++++|+++.++...|....       +||
T Consensus       129 L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          129 LYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             EECCCCCCCccChh--hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            34444444444444  444444444444444444444444444444444444444444444444433322       899


Q ss_pred             ccccCCcHHHHHHHHhccC
Q psy10386         75 LVCTCDLMWYKEWSTSLGE   93 (166)
Q Consensus        75 ~~C~C~l~~l~~~~~~~~~   93 (166)
                      |.|+|++.|+..|++++..
T Consensus       207 ~~C~c~~~~l~~wl~~~~~  225 (290)
T 1p9a_G          207 WLCNCEILYFRRWLQDNAE  225 (290)
T ss_dssp             BCCSGGGHHHHHHHHHTGG
T ss_pred             ccCcCccHHHHHHHHhCcc
Confidence            9999999999999998643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.71  E-value=2.7e-17  Score=110.43  Aligned_cols=102  Identities=25%  Similarity=0.434  Sum_probs=81.5

Q ss_pred             EEecCCCCc--eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCCCCCccccC
Q psy10386          2 IEIWGGQLS--SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTC   79 (166)
Q Consensus         2 L~ls~N~l~--~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~~Np~~C~C   79 (166)
                      ++-+++.++  .+|.+  .   -++|+.|+|++|+|+.++++.|..+++|+.|+|+                +|||.|||
T Consensus        13 v~Cs~~~L~~~~vP~~--l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~----------------~NP~~CdC   71 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTA--F---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLG----------------ANPWRCDC   71 (130)
T ss_dssp             EECCSSCCCTTTSCSC--C---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC----------------SSCCBCSG
T ss_pred             EEeCCCCCccccCCCC--C---CcCCCEEECCCCcCCccChhhhhhccccCEEEec----------------CCCeeccC
Confidence            456777777  77765  2   1468888999999998888888888888888777                78999999


Q ss_pred             CcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-ccc--CCC
Q psy10386         80 DLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLV--CEG  131 (166)
Q Consensus        80 ~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~--C~~  131 (166)
                      ++.||..|++.......    ..++.|..|..   ++|+.+.++.. ++.  |..
T Consensus        72 ~l~~l~~wl~~~~~~~~----~~~~~C~~P~~---l~g~~l~~l~~~~l~c~C~~  119 (130)
T 3rfe_A           72 RLVPLRAWLAGRPERAP----YRDLRCVAPPA---LRGRLLPYLAEDELRAACAP  119 (130)
T ss_dssp             GGHHHHHHHHTSSCSGG----GTTCBCCBSTT---TTTCBGGGCCHHHHHHTTCC
T ss_pred             ccHHHHHHHHhCccccc----ccCcEeCcChH---HcCCCcccCCHHHhhCcCCC
Confidence            99999999997643222    46799999999   99999999997 554  544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.70  E-value=7.7e-17  Score=121.91  Aligned_cols=115  Identities=20%  Similarity=0.350  Sum_probs=99.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC---------C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE---------D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~---------~   72 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|++.+..+..+..+.         +
T Consensus       180 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          180 LDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred             EECCCCCcCCcCHH--HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence            78999999999888  899999999999999999999988899999999999999999988887776652         9


Q ss_pred             CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCC
Q psy10386         73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP  124 (166)
Q Consensus        73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~  124 (166)
                      |+|.|+|++.|+.+|++.....   ..+.+...|..|..   ++|.++.++.
T Consensus       258 N~~~~~c~~~~~~~~l~~~~~~---~~~~~~~~C~~p~~---~~g~~~~~~~  303 (306)
T 2z66_A          258 NDFACTCEHQSFLQWIKDQRQL---LVEVERMECATPSD---KQGMPVLSLN  303 (306)
T ss_dssp             CCEECSGGGHHHHHHHHHTGGG---BSCGGGCBEEESGG---GTTCBGGGCC
T ss_pred             CCeecccChHHHHHHHHhhhhh---hccccccccCCchh---hCCceeeeec
Confidence            9999999999999999975432   23457899999999   9998887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.69  E-value=5.9e-17  Score=121.48  Aligned_cols=117  Identities=30%  Similarity=0.501  Sum_probs=87.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|.++.+++..|..++        +|
T Consensus       158 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          158 LFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             EECCCCcccccCHH--HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence            56666777666666  666677777777777777766666676777777777777777777666555544        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cc-cC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QL-VC  129 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~-~C  129 (166)
                      +|.|+|.+.|+..|++....      ..+...|..|..   ++|..+.++.. ++ .|
T Consensus       236 ~~~c~~~~~~~~~~l~~~~~------~~~~~~c~~p~~---l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          236 PWVCDCRARPLWAWLQKFRG------SSSEVPCSLPQR---LAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             CEECSGGGHHHHHHHHHCCS------EECCCBEEESGG---GTTCBGGGSCGGGSCCC
T ss_pred             CccCCCCcHHHHHHHHhccc------ccCccccCCchH---hCCcChhhcCHHHhccC
Confidence            99999999999999988542      246799999999   99999998886 44 35

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.68  E-value=4.3e-18  Score=141.21  Aligned_cols=117  Identities=24%  Similarity=0.410  Sum_probs=74.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc----CCCC-----C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF----SGLE-----D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~----~~l~-----~   72 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..|    ..+.     +
T Consensus       541 L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          541 LNLESNGFDEIPVE--VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             EECCCCCCCCCCHH--HcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccC
Confidence            67888888888888  88899999999999999999988888888999999999999988888754    3443     9


Q ss_pred             CCccccCCc-HHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC
Q psy10386         73 NPLVCTCDL-MWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK  125 (166)
Q Consensus        73 Np~~C~C~l-~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~  125 (166)
                      |||.|+|++ .||..|++........  ...++.|..|..   ++|+.+.+++.
T Consensus       619 N~~~c~c~~~~~~~~~~~~~~~~~~~--~~~~~~C~~p~~---~~g~~l~~~~~  667 (680)
T 1ziw_A          619 NPFDCTCESIAWFVNWINETHTNIPE--LSSHYLCNTPPH---YHGFPVRLFDT  667 (680)
T ss_dssp             CCCCBCCCCCSSEECCSSCC----------------------------------
T ss_pred             CCcccCCccHHHHHHHHHhcCccccc--ccCCcEECCchH---HCCCcccccCh
Confidence            999999996 9999998654322111  135689999999   99999999986

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.67  E-value=6e-17  Score=132.67  Aligned_cols=118  Identities=20%  Similarity=0.330  Sum_probs=85.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC----CC-----C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG----LE-----D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~----l~-----~   72 (166)
                      |++++|+++++++.  .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|++++++.. +..    +.     +
T Consensus       478 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          478 LDLSKCQLEQISWG--VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTN  554 (606)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCS
T ss_pred             EECCCCcCCccChh--hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccC
Confidence            78999999999888  899999999999999999999888899999999999999999988876 333    22     9


Q ss_pred             CCccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCCcccC
Q psy10386         73 NPLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPKQLVC  129 (166)
Q Consensus        73 Np~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~~~~C  129 (166)
                      |||.|+|++.|+.+|++.....   +.+...+.|..|..   ++|..+.++.. ..|
T Consensus       555 N~~~c~c~~~~~~~~l~~~~~~---~~~~~~~~C~~p~~---~~~~~l~~~~~-~~c  604 (606)
T 3vq2_A          555 NSVACICEHQKFLQWVKEQKQF---LVNVEQMTCATPVE---MNTSLVLDFNN-STC  604 (606)
T ss_dssp             CCCCCSSTTHHHHTTTTTSSSS---BSSGGGCCCC----------------------
T ss_pred             CCcccCCccHHHHHHHHcCccc---ccCCccceeCCChH---hCCCEeeeccc-ccC
Confidence            9999999999999999875432   23456799999999   99999988873 345

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.66  E-value=5.5e-16  Score=114.40  Aligned_cols=90  Identities=30%  Similarity=0.547  Sum_probs=73.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..|..+.        +|
T Consensus       112 L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          112 LYLGGNQLKSLPSG--VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EEcCCCcCCCcChh--HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            67777888777777  777788888888888888888877787888888888888888888877776655        99


Q ss_pred             Ccccc-CCcHHHHHHHHhccC
Q psy10386         74 PLVCT-CDLMWYKEWSTSLGE   93 (166)
Q Consensus        74 p~~C~-C~l~~l~~~~~~~~~   93 (166)
                      +|.|+ |++.|+..|++....
T Consensus       190 ~~~c~~~~~~~l~~~~~~~~~  210 (251)
T 3m19_A          190 QFDCSRCEILYLSQWIRENSN  210 (251)
T ss_dssp             CBCTTSTTHHHHHHHHHHSGG
T ss_pred             ceeCCccccHHHHHHHHhccc
Confidence            99999 999999999997644

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=1e-16  Score=131.32  Aligned_cols=114  Identities=29%  Similarity=0.451  Sum_probs=92.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++++++.  .|.++++|+.|++++|+++.+.+..|..+++| .|++++|+++++++..|..++        +|
T Consensus       481 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          481 LVLSFCDLSSIDQH--AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             EECCCCccCccChh--hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence            67788888888777  78888888888888888888888888888888 888888888887776654433        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP  124 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~  124 (166)
                      ||.|+|...|+.+|++.....   +.+.....|..|..   ++|+++.+++
T Consensus       558 ~~~c~c~~~~~~~w~~~~~~~---~~~~~~~~C~~p~~---~~g~~l~~~~  602 (606)
T 3t6q_A          558 PLDCTCSNIYFLEWYKENMQK---LEDTEDTLCENPPL---LRGVRLSDVT  602 (606)
T ss_dssp             CEECSGGGHHHHHHHHHCGGG---EECGGGCBEEESGG---GTTCBGGGCC
T ss_pred             CccccCCcHHHHHHHHhCccc---ccCCCCCeeCCchH---hCCCeeeeee
Confidence            999999999999999975332   23456799999999   9999999887

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.65  E-value=1.3e-15  Score=113.59  Aligned_cols=120  Identities=26%  Similarity=0.480  Sum_probs=87.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++..|..++        +|
T Consensus       138 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          138 LSLGYNELQSLPKG--VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcCCccCHh--HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            67777777777777  777888888888888888888877788888888888888888888877776655        99


Q ss_pred             CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC---cccCCCC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK---QLVCEGE  132 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~---~~~C~~~  132 (166)
                      ||.|+|+ +.|+..|++.....  .+...+...|..+       |+.+.++..   ...|..|
T Consensus       216 ~~~c~c~~~~~~~~~l~~~~~~--~~~~~~~~~C~~~-------~~~~~~~~~~~~~~~C~~p  269 (270)
T 2o6q_A          216 PWDCTCNGIIYMAKWLKKKADE--GLGGVDTAGCEKG-------GKAVLEITEKDAASDCVSP  269 (270)
T ss_dssp             CBCCSSSSSHHHHHHHHHHHHT--TCSSTTCCBBSSS-------CSBGGGCCTTTTCSCCCSC
T ss_pred             CeeCCCccHHHHHHHHHhhccc--cccCccccccCCC-------CeEeEEecchhhcccCCCC
Confidence            9999997 88999999875422  1223456778643       445666654   2467543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.64  E-value=1.5e-15  Score=110.81  Aligned_cols=106  Identities=25%  Similarity=0.386  Sum_probs=63.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC------------------
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD------------------   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~------------------   63 (166)
                      |++++|+|+.+++.  .|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++.++                  
T Consensus        69 L~L~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A           69 LYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC
T ss_pred             EECCCCCCCCcChh--hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc
Confidence            55666666666665  5666666666666666666666655554444444444444444333                  


Q ss_pred             -----ccccCCCC--------CCCccccCC-cHHHHHHHHhccCCcc-----hhcccCCceecCC
Q psy10386         64 -----PAAFSGLE--------DNPLVCTCD-LMWYKEWSTSLGEKED-----EQMSRKRTVCTLG  109 (166)
Q Consensus        64 -----~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~~~~~~-----~~~~~~~~~C~~p  109 (166)
                           +..|..+.        +|||.|+|. +.|+..|+........     .+.+.+...|..+
T Consensus       147 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~  211 (229)
T 3e6j_A          147 LKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT  211 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCcccCCCCcCccCCC
Confidence                 22222222        999999995 9999999987543221     1234556778765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.64  E-value=2.7e-16  Score=125.60  Aligned_cols=120  Identities=24%  Similarity=0.483  Sum_probs=100.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|+++.+++..|..++        +|
T Consensus       253 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          253 LNLSYNPISTIEGS--MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             EECCSSCCCEECTT--SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             eECCCCcCCccChh--hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            78899999999988  899999999999999999999999999999999999999999999998887665        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-----cccCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-----QLVCEGE  132 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-----~~~C~~~  132 (166)
                      ||.|+|.+.|+.+|....      ....+...|..|..   ++|..+.+++.     .+.|..|
T Consensus       331 ~l~c~c~~~~~~~~~~~~------~~~~~~~~C~~p~~---~~g~~l~~~~~~~~~~~~~C~~P  385 (477)
T 2id5_A          331 PLACDCRLLWVFRRRWRL------NFNRQQPTCATPEF---VQGKEFKDFPDVLLPNYFTCRRA  385 (477)
T ss_dssp             CEECSGGGHHHHTTTTSS------CCTTCCCBEEESGG---GTTCBGGGSCSSCCTTSSCCEEE
T ss_pred             CccCccchHhHHhhhhcc------ccCccCceeCCchH---HcCCchhhCccccccceeEeccc
Confidence            999999999988764321      12346789999998   89988877753     3466543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=2.9e-15  Score=104.94  Aligned_cols=103  Identities=27%  Similarity=0.504  Sum_probs=80.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+.        +|
T Consensus        57 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           57 LSLSQNQIQSLPDG--VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCcceEeChh--HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            67788888888777  778888888888888888888887777888888888888888888877766554        99


Q ss_pred             CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                      +|.|+|. +.|+..|+.......     .....|..+..
T Consensus       135 ~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~C~~~~~  168 (177)
T 2o6r_A          135 PWDCSCPRIDYLSRWLNKNSQKE-----QGSAKCSGSGK  168 (177)
T ss_dssp             CBCCCHHHHHHHHHHHHHTGGGE-----ESCCBBTTTCC
T ss_pred             CeeccCccHHHHHHHHhhCcccc-----ccCcEeCCCCc
Confidence            9999997 899999998754322     25688876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=1.5e-15  Score=117.70  Aligned_cols=106  Identities=21%  Similarity=0.347  Sum_probs=62.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC------------
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG------------   69 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~------------   69 (166)
                      |+|++|+|+.+++.  .|.++++|+.|+|++|+++.+++..|..+++|+.|++++|+++.++...|.+            
T Consensus        93 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           93 LDLSSNHLHTLDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             EECCCCcCCcCCHH--HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            45555555555555  5555555555555555555555555555555555555555555555544421            


Q ss_pred             ---------------C----------CCCCccccCCcHHH-HHHHHhccCCcchhcccCCceecCCCC
Q psy10386         70 ---------------L----------EDNPLVCTCDLMWY-KEWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        70 ---------------l----------~~Np~~C~C~l~~l-~~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                                     +          .+|||.|||++.|+ ..|+........  .......|..|..
T Consensus       171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~~~~~~~~~~~~~~~~--~~~~~~~C~~p~~  236 (361)
T 2xot_A          171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVM--DFQEDLYCMHSKK  236 (361)
T ss_dssp             CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHHHHHHHHHHHTTCHHHH--TTGGGCEEESSSC
T ss_pred             CCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCcHHHHHHHHHhcCCchh--ccCcCCEeCCChH
Confidence                           1          18999999999885 668765321111  1135689998876

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.51  E-value=7e-14  Score=110.73  Aligned_cols=103  Identities=27%  Similarity=0.483  Sum_probs=81.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++++++.  .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|+++++++..|..++        +|
T Consensus       328 L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          328 LNLSQNFLGSIDSR--MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             EECCSSCCCEECGG--GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCCcChh--HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            67788888888777  788888888888888888888777788888888888888888888887776655        99


Q ss_pred             CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                      ++.|+|. +.|+..|++......     .....|..+..
T Consensus       406 ~l~~~~~~~~~l~~~l~~~~~~~-----~~~~~c~~~~~  439 (455)
T 3v47_A          406 PWDCSCPRIDYLSRWLNKNSQKE-----QGSAKCSGSGK  439 (455)
T ss_dssp             CBCCCTTTTHHHHHHHHHTTTTE-----ESCCBBTTTCC
T ss_pred             CcccCCCcchHHHHHHHhCccce-----eeeeeecCCCc
Confidence            9999997 899999998754432     34577877654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.44  E-value=1.1e-12  Score=93.83  Aligned_cols=90  Identities=32%  Similarity=0.550  Sum_probs=68.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++..|..+.        +|
T Consensus        81 L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           81 LNLSTNQLQSLPNG--VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EECCCCcCCccCHh--HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            66777777777776  677777777777777777777777777777788888888877777776666554        89


Q ss_pred             CccccCC-cHHHHHHHHhccC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGE   93 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~   93 (166)
                      +|.|+|. +.++..|......
T Consensus       159 ~~~~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          159 PWDCTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CBCCCTTTTHHHHHHHHHCTT
T ss_pred             CeecCCCCHHHHHHHHHhCCc
Confidence            9999996 7888888877554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.41  E-value=4.4e-13  Score=107.94  Aligned_cols=83  Identities=25%  Similarity=0.520  Sum_probs=67.1

Q ss_pred             ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCCcHHH-HHHHHhccC
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCDLMWY-KEWSTSLGE   93 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~l~~l-~~~~~~~~~   93 (166)
                      ++|+.|++++|+++.++...+ .+++|+.|++++|+++.++...|..++        +|||.|+|.+.|+ ..|+++...
T Consensus       421 ~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~  499 (520)
T 2z7x_B          421 PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  499 (520)
T ss_dssp             TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTT
T ss_pred             ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHhccc
Confidence            567777777777777777665 889999999999999999888676655        9999999999999 999987543


Q ss_pred             CcchhcccCCceecCCCC
Q psy10386         94 KEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        94 ~~~~~~~~~~~~C~~p~~  111 (166)
                      .     ...+..|..|..
T Consensus       500 ~-----~~~~~~C~~p~~  512 (520)
T 2z7x_B          500 K-----EQGSAKCSGSGK  512 (520)
T ss_dssp             T-----EESCCBBTTTCC
T ss_pred             c-----CCCCCCcCCccc
Confidence            2     246789999865

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=6.1e-13  Score=99.10  Aligned_cols=102  Identities=25%  Similarity=0.457  Sum_probs=67.2

Q ss_pred             EEecCCCCceee-CCccccCCCccCceeeccCCcCCccC----------------------------ccccCCCCCCCEE
Q psy10386          2 IEIWGGQLSSIF-EKVATSGGLHNLDSLVLAHNQLRTIP----------------------------PRVFAHLPLLNSL   52 (166)
Q Consensus         2 L~ls~N~l~~~~-~~~~~f~~l~~L~~L~ls~N~l~~i~----------------------------~~~f~~l~~L~~l   52 (166)
                      |++++|+++.+. +.  .|.++++|+.|++++|+++.++                            +..|.. .+|+.|
T Consensus       129 L~l~~n~l~~~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L  205 (276)
T 2z62_A          129 LNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKEL  205 (276)
T ss_dssp             EECCSSCCCCCCCCG--GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEE
T ss_pred             EECcCCccceecCch--hhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEE
Confidence            455555555533 33  4555555555555555555544                            444422 367888


Q ss_pred             eccCCcccccCccccCCCC--------CCCccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386         53 ELDGNHIHTVDPAAFSGLE--------DNPLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        53 ~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                      ++++|+++++++..|..++        +|||.|+|. +.|+..|++.....     ......|..|..
T Consensus       206 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~-----~~~~~~C~~~~~  268 (276)
T 2z62_A          206 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQK-----EQGSAKCSGSGK  268 (276)
T ss_dssp             ECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGG-----BCSCCBBTTTCC
T ss_pred             ECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccc-----cCCCceeeCCCC
Confidence            8888888888887776665        999999996 89999999875432     234578887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.39  E-value=1.3e-12  Score=106.34  Aligned_cols=85  Identities=27%  Similarity=0.491  Sum_probs=64.4

Q ss_pred             ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCCcHHHHH-HHHhccC
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCDLMWYKE-WSTSLGE   93 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~l~~l~~-~~~~~~~   93 (166)
                      ++|+.|++++|+++.++++.+ .+++|+.|++++|+++++++..|..++        +|||.|+|.+.|+.+ |.+....
T Consensus       450 ~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~  528 (562)
T 3a79_B          450 PKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSG  528 (562)
T ss_dssp             TTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTT
T ss_pred             CcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCC
Confidence            577888888888888888776 889999999999999999988676665        999999999999966 8776443


Q ss_pred             Ccc---hhcccCCceecC
Q psy10386         94 KED---EQMSRKRTVCTL  108 (166)
Q Consensus        94 ~~~---~~~~~~~~~C~~  108 (166)
                      ...   ...+.....|..
T Consensus       529 ~~~~~~~~~~~~~~~C~~  546 (562)
T 3a79_B          529 VVRNSAGSVAPDSAKCSG  546 (562)
T ss_dssp             TEECSSSSBCSSSSCBSS
T ss_pred             cccccccCCCCCCCccCC
Confidence            221   001234567765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.37  E-value=1.8e-12  Score=105.20  Aligned_cols=103  Identities=25%  Similarity=0.473  Sum_probs=83.2

Q ss_pred             EEecCCCCc-eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------C
Q psy10386          2 IEIWGGQLS-SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------D   72 (166)
Q Consensus         2 L~ls~N~l~-~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~   72 (166)
                      |++++|+++ +..+.  .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|+++++++..|..++        +
T Consensus       450 L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          450 LKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             EECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             EECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence            678888886 34445  788899999999999999999888899999999999999999999888887666        9


Q ss_pred             CCccccCCcHHHH-HHHHhccCCcchhcccCCceecCCCC
Q psy10386         73 NPLVCTCDLMWYK-EWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        73 Np~~C~C~l~~l~-~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                      |+|.|+|...|+. .|++.......    .. ..|..|..
T Consensus       528 N~~~~~~~~~~~~~~wl~~~~~~~~----~~-~~C~~~~~  562 (570)
T 2z63_A          528 NPWDCSCPRIDYLSRWLNKNSQKEQ----GS-AKCSGSGK  562 (570)
T ss_dssp             SCBCCCTTTTHHHHHHHHHTGGGEE----SC-CBBTTTCC
T ss_pred             CcccCCCcchHHHHHHHHhccccCC----Cc-hhhCCCCC
Confidence            9999999988877 99988543322    12 29988755

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.34  E-value=5.2e-12  Score=94.10  Aligned_cols=90  Identities=33%  Similarity=0.546  Sum_probs=67.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..|..++        +|
T Consensus       138 L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          138 LNLAHNQLQSLPKG--VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EECCCCccCccCHH--HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            56777777777776  677777777777777777777777777777777777777777777776666554        89


Q ss_pred             CccccCC-cHHHHHHHHhccC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGE   93 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~   93 (166)
                      +|.|+|. +.++..|......
T Consensus       216 ~~~~~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          216 PWDCTCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             CBCCCTTTTHHHHHHHHHTGG
T ss_pred             CccccCcHHHHHHHHHHhCCC
Confidence            9999996 7888888776543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.28  E-value=7.4e-12  Score=101.25  Aligned_cols=84  Identities=24%  Similarity=0.528  Sum_probs=69.5

Q ss_pred             CCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCC-cHHHHHHHHhc
Q psy10386         21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCD-LMWYKEWSTSL   91 (166)
Q Consensus        21 ~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~   91 (166)
                      ++++|+.|++++|+++.++..  ..+++|+.|++++|+++++++..|..+.        +|||.|+|. +.|+..|++..
T Consensus       449 ~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~  526 (549)
T 2z81_A          449 FLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  526 (549)
T ss_dssp             CCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred             cCChhcEEECCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhc
Confidence            678999999999999998874  4689999999999999999988776665        999999998 68888999875


Q ss_pred             cCCcchhcccCCceecCCCC
Q psy10386         92 GEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        92 ~~~~~~~~~~~~~~C~~p~~  111 (166)
                      ...     ...+..|..|..
T Consensus       527 ~~~-----~~~~~~C~~~~~  541 (549)
T 2z81_A          527 SQK-----EQGSAKCSGSGK  541 (549)
T ss_dssp             TTT-----EESCCBBTTTCC
T ss_pred             ccc-----cCCCCeECCCCc
Confidence            433     246788987643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.27  E-value=2.2e-12  Score=99.35  Aligned_cols=64  Identities=23%  Similarity=0.507  Sum_probs=52.6

Q ss_pred             cCCCCCCCEEeccCCcccccCccccCCCC--------CCCccccCC-cHHHHHHHHhccCCcchhcccCCceecCCCC
Q psy10386         43 FAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DNPLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGSS  111 (166)
Q Consensus        43 f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~Np~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~  111 (166)
                      +..+++|+.|++++|+++.++...|..++        +|+|.|+|. +.|+..|++......     .+...|..|..
T Consensus       273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~C~~p~~  345 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE-----QGSAKCSGSGK  345 (353)
T ss_dssp             HHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTTTTE-----ESCCBBTTTCC
T ss_pred             HhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhccccC-----CCCcccCCCCC
Confidence            45678999999999999999988877666        999999996 899999999865433     35689998754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.22  E-value=1.5e-11  Score=100.42  Aligned_cols=68  Identities=26%  Similarity=0.351  Sum_probs=59.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |+|++|+|+++++.  +|.++++|++|+|++|+|+.+++++|.++++|++|+|++|+|+++++++|.++.
T Consensus        57 LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~  124 (635)
T 4g8a_A           57 LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  124 (635)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred             EEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence            78889999998888  888999999999999999988888888888999999999998888888887766

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.19  E-value=5.7e-11  Score=85.95  Aligned_cols=68  Identities=29%  Similarity=0.387  Sum_probs=38.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+|+.+++.  .|.++++|+.|++++|+++.+.+..|.++++|++|++++|+++.+++..|..+.
T Consensus        37 L~l~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~  104 (220)
T 2v9t_B           37 IRLEQNTIKVIPPG--AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF  104 (220)
T ss_dssp             EECCSSCCCEECTT--SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EECCCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC
Confidence            45555555555555  555555555555555555555555555555555555555555555555544443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.14  E-value=9.6e-11  Score=83.20  Aligned_cols=67  Identities=24%  Similarity=0.422  Sum_probs=62.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+|+.++ .  .|.++++|+.|++++|+++.+++.+|.++++|+.|++++|+++.+++..|..+.
T Consensus        36 L~L~~n~i~~ip-~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~  102 (193)
T 2wfh_A           36 LYLDGNQFTLVP-K--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK  102 (193)
T ss_dssp             EECCSSCCCSCC-G--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             EECCCCcCchhH-H--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCC
Confidence            789999999888 5  799999999999999999999999999999999999999999999999888776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.14  E-value=1.3e-10  Score=84.13  Aligned_cols=68  Identities=26%  Similarity=0.444  Sum_probs=36.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+|+.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+.+..|..+.
T Consensus        62 L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  129 (220)
T 2v70_A           62 INFSNNKITDIEEG--AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS  129 (220)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCT
T ss_pred             EECCCCcCCEECHH--HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCc
Confidence            44555555555554  455555555555555555555555555555555555555555555555444433

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.06  E-value=3.8e-10  Score=78.60  Aligned_cols=68  Identities=28%  Similarity=0.433  Sum_probs=62.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++++++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++++++..|..+.
T Consensus        33 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~  100 (177)
T 2o6r_A           33 LELESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLT  100 (177)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EEeCCCcccEeCHH--HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCc
Confidence            78999999999988  899999999999999999999999899999999999999999999988776655

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.06  E-value=3.4e-10  Score=80.16  Aligned_cols=69  Identities=29%  Similarity=0.406  Sum_probs=62.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++. +.|.++++|+.|++++|+++.+.+.+|.++++|+.|++++|+++.+++..|..+.
T Consensus        34 L~l~~n~i~~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  102 (192)
T 1w8a_A           34 LLLNDNELGRISSD-GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             EECCSCCCCSBCCS-CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             EECCCCcCCccCCc-cccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC
Confidence            78999999998873 0489999999999999999999999999999999999999999999998887766

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.03  E-value=3.7e-10  Score=78.51  Aligned_cols=61  Identities=26%  Similarity=0.296  Sum_probs=57.2

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      .|++++|+|+.+++.  .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|++....
T Consensus        58 ~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           58 RLDLDNNQLTVLPAG--VFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             EEECCCCCcCccChh--hccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            389999999999999  9999999999999999999999999999999999999999987654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.02  E-value=5.2e-10  Score=86.50  Aligned_cols=68  Identities=31%  Similarity=0.349  Sum_probs=42.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |+|++|+|+.+++.  .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|++..+++..|..+.
T Consensus        69 L~L~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  136 (361)
T 2xot_A           69 LLLSHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA  136 (361)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EECCCCcCCccChh--hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence            55666666666655  566666666666666666666666666666666666666666666666555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.01  E-value=6.9e-10  Score=81.52  Aligned_cols=65  Identities=32%  Similarity=0.492  Sum_probs=32.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS   68 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~   68 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|.
T Consensus        64 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  128 (251)
T 3m19_A           64 LNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD  128 (251)
T ss_dssp             EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             EECCCCcCCccCHh--HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhc
Confidence            44555555555544  455555555555555555555544444444555555555555444444433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.00  E-value=6.6e-10  Score=77.61  Aligned_cols=62  Identities=24%  Similarity=0.257  Sum_probs=57.9

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      .|+|++|+|+.+++.  .|.++++|+.|+|++|+|+.+++..|..+++|+.|++++|++.....
T Consensus        61 ~L~Ls~N~l~~i~~~--~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           61 QLYFNSNKLTAIPTG--VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             EEECCCCCCCccChh--HhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            389999999999998  89999999999999999999999999999999999999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.00  E-value=8.5e-10  Score=78.71  Aligned_cols=68  Identities=26%  Similarity=0.422  Sum_probs=42.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|++|++++|+++.+++..|..+.
T Consensus        33 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  100 (208)
T 2o6s_A           33 LDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT  100 (208)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EEcCCCccCcCChh--hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc
Confidence            56666666666665  566666666666666666666666666666666666666666666655554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.94  E-value=1.4e-09  Score=79.00  Aligned_cols=69  Identities=29%  Similarity=0.427  Sum_probs=65.0

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      .|++++|+++++.+.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++..|..+.
T Consensus        44 ~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  112 (229)
T 3e6j_A           44 ILYLHDNQITKLEPG--VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV  112 (229)
T ss_dssp             EEECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             EEEcCCCccCccCHH--HhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence            389999999999998  999999999999999999999999999999999999999999999998887666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.94  E-value=3.9e-10  Score=86.83  Aligned_cols=67  Identities=22%  Similarity=0.351  Sum_probs=60.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeecc-CCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLA-HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls-~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+|+.+++.  .|.+ .+|+.++++ +|.++.+++++|.++++|+.|++++|+|+.+++..|..+.
T Consensus       159 L~L~~N~i~~i~~~--~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~  226 (350)
T 4ay9_X          159 LWLNKNGIQEIHNS--AFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  226 (350)
T ss_dssp             EECCSSCCCEECTT--SSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             hccccccccCCChh--hccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence            78999999999998  7765 678999987 5799999999999999999999999999999999888887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.93  E-value=1.7e-09  Score=81.28  Aligned_cols=68  Identities=29%  Similarity=0.492  Sum_probs=64.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.++++.|..+++|+.|++++|+++++++..|..+.
T Consensus       105 L~l~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  172 (290)
T 1p9a_G          105 LDVSFNRLTSLPLG--ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE  172 (290)
T ss_dssp             EECCSSCCCCCCSS--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred             EECCCCcCcccCHH--HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence            79999999999998  999999999999999999999999999999999999999999999998887766

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.91  E-value=1.1e-09  Score=79.69  Aligned_cols=68  Identities=18%  Similarity=0.364  Sum_probs=59.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCc-CCccCccccCCCCCCCEEeccC-CcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQ-LRTIPPRVFAHLPLLNSLELDG-NHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~-l~~i~~~~f~~l~~L~~l~l~~-N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+ ++.+++.+|.++++|++|++++ |.++.+++..|..++
T Consensus        36 L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           36 LKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             EEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             EEEeCCcceEECHH--HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            78889999999988  88899999999999996 8999888888899999999998 899998888777665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.90  E-value=3.1e-09  Score=78.81  Aligned_cols=68  Identities=28%  Similarity=0.420  Sum_probs=42.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|++|++++|+++.+++..|..+++|++|++++|+++.+++..|..+.
T Consensus        42 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  109 (270)
T 2o6q_A           42 LDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV  109 (270)
T ss_dssp             EECCSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCS
T ss_pred             EECcCCCCCeeCHH--HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccccc
Confidence            56666666666665  666666666666666666666666666666666666666666666655554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.88  E-value=3.2e-09  Score=84.28  Aligned_cols=68  Identities=31%  Similarity=0.423  Sum_probs=44.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+|+.+++.  .|.++++|+.|++++|+++.+++..|.++++|+.|++++|+++.+++..|..++
T Consensus        80 L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  147 (452)
T 3zyi_A           80 LNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS  147 (452)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCT
T ss_pred             EECcCCcCceECHH--HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccC
Confidence            56666666666666  666666666666666666666666666666666666666666666666555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.88  E-value=4.6e-09  Score=78.30  Aligned_cols=68  Identities=32%  Similarity=0.412  Sum_probs=43.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|..++
T Consensus       110 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  177 (285)
T 1ozn_A          110 LHLDRCGLQELGPG--LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH  177 (285)
T ss_dssp             EECTTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EECCCCcCCEECHh--HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence            56666666666665  666666666666666666666666666666666666666666666655555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.88  E-value=2.1e-09  Score=74.89  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=42.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++.+  .  .|.++++|+.|++++|+++.++++.|..+++|+.|++++|+++.++.
T Consensus        47 L~Ls~N~l~~~--~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           47 IDFSDNEIRKL--D--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             EECCSSCCCEE--C--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             EECCCCCCCcc--c--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence            66777777776  3  56677777777777777777776666677777777777777766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.88  E-value=4e-09  Score=78.29  Aligned_cols=68  Identities=26%  Similarity=0.351  Sum_probs=45.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|++|++++|.+..+++..|..+.
T Consensus        33 L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (276)
T 2z62_A           33 LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (276)
T ss_dssp             EECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             EECCCCcccccCHh--HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence            56677777777666  666777777777777777766666666666777777777776666665555443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.87  E-value=4.3e-09  Score=83.24  Aligned_cols=68  Identities=32%  Similarity=0.403  Sum_probs=47.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|+|++|+++.+++.+|.++++|+.|++++|+++.+++..|..+.
T Consensus        69 L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  136 (440)
T 3zyj_A           69 LNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS  136 (440)
T ss_dssp             EECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCS
T ss_pred             EEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccc
Confidence            56777777777766  677777777777777777777766677777777777777777766666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.86  E-value=4.9e-09  Score=77.86  Aligned_cols=67  Identities=34%  Similarity=0.500  Sum_probs=38.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|.++.+++..|..+
T Consensus        90 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  156 (272)
T 3rfs_A           90 LILTGNQLQSLPNG--VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL  156 (272)
T ss_dssp             EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EECCCCccCccChh--HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC
Confidence            45566666665555  55556666666666666665555555555566666666665555555544443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.84  E-value=4.2e-09  Score=83.21  Aligned_cols=68  Identities=31%  Similarity=0.450  Sum_probs=47.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.+.+..|..++
T Consensus       304 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  371 (455)
T 3v47_A          304 LTLAQNEINKIDDN--AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP  371 (455)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EECCCCcccccChh--HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence            56677777777666  677777777777777777777666677777777777777777777666665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.81  E-value=8.2e-09  Score=82.19  Aligned_cols=68  Identities=21%  Similarity=0.407  Sum_probs=42.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|+|++|.++.+.+..|.++++|++|++++|+++.+++..|..+.
T Consensus        37 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           37 LDLGKNRIKTLNQD--EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             EECCCCccceECHh--HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            56666666666665  666666666666666666666666666666666666666666666655554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.80  E-value=6.3e-09  Score=78.93  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.++..  .  .+++|+.|++++|+++.+++. |..+++|+.|++++|+++.++.. +..++        +|
T Consensus       174 L~L~~N~l~~~~~~--~--~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          174 LNLQYNFIYDVKGQ--V--VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN  247 (317)
T ss_dssp             EECTTSCCCEEECC--C--CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTC
T ss_pred             EECCCCcCcccccc--c--ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCC
Confidence            67777777777554  3  478888888888888888776 77888999999999999888654 44443        99


Q ss_pred             CccccCCcHH
Q psy10386         74 PLVCTCDLMW   83 (166)
Q Consensus        74 p~~C~C~l~~   83 (166)
                      ++.|+|...+
T Consensus       248 ~~~~~~~~~~  257 (317)
T 3o53_A          248 GFHCGTLRDF  257 (317)
T ss_dssp             CCBHHHHHHH
T ss_pred             CccCcCHHHH
Confidence            9999754333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.80  E-value=5.1e-09  Score=88.33  Aligned_cols=100  Identities=23%  Similarity=0.267  Sum_probs=74.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|++++..|.  .|+++++|+.|+|++|++++..|..|..+++|+.||+++|++++..|..|..+.        +|
T Consensus       637 LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          637 LDMSYNMLSGYIPK--EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             EECCSSCCBSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             EECcCCcccccCCH--HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            78999999988777  899999999999999999988788899999999999999999987777777665        66


Q ss_pred             CccccCC-cHHHHHHHHhccCCcchhcccCCceecCCC
Q psy10386         74 PLVCTCD-LMWYKEWSTSLGEKEDEQMSRKRTVCTLGS  110 (166)
Q Consensus        74 p~~C~C~-l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~  110 (166)
                      ++...-. ...+.       ......+.++...|+.|.
T Consensus       715 ~l~g~iP~~~~~~-------~~~~~~~~gN~~Lcg~~l  745 (768)
T 3rgz_A          715 NLSGPIPEMGQFE-------TFPPAKFLNNPGLCGYPL  745 (768)
T ss_dssp             EEEEECCSSSSGG-------GSCGGGGCSCTEEESTTS
T ss_pred             cccccCCCchhhc-------cCCHHHhcCCchhcCCCC
Confidence            6653211 01111       122233456778888764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.80  E-value=9.1e-09  Score=79.01  Aligned_cols=65  Identities=25%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS   68 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~   68 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++.+|..+++|++|++++|+++.+++..|.
T Consensus        57 L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  121 (353)
T 2z80_A           57 LDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK  121 (353)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred             EECCCCcCcccCHH--HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence            44555555555554  455555555555555555555544455555555555555555554444333

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.79  E-value=7.6e-09  Score=79.57  Aligned_cols=68  Identities=24%  Similarity=0.413  Sum_probs=58.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcC-CccCccccCCCCCCCE-EeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQL-RTIPPRVFAHLPLLNS-LELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l-~~i~~~~f~~l~~L~~-l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |+|++|+|+.++++  +|.++++|+.|+|++|++ +.+++++|.++++++. +.+++|++..++++.|..++
T Consensus        35 L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~  104 (350)
T 4ay9_X           35 LRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  104 (350)
T ss_dssp             EEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred             EEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence            78999999999998  899999999999999987 5578888988888765 66777899999888888776

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.78  E-value=9.8e-09  Score=83.93  Aligned_cols=68  Identities=28%  Similarity=0.244  Sum_probs=50.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|.++++++.  .|.++++|++|++++|+++.+.+.+|.++++|++|++++|++..+.+..|..+.
T Consensus        38 L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  105 (606)
T 3t6q_A           38 LEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK  105 (606)
T ss_dssp             EECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred             EEccCCccCcCChh--HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence            67777777777777  777777777777777777777777777777777777777777777666665554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.78  E-value=1.2e-08  Score=79.32  Aligned_cols=67  Identities=25%  Similarity=0.445  Sum_probs=38.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|.++.+++.  .|.++++|+.|++++|.++.+++..|..+++|++|++++|.+..+++..|..+
T Consensus        74 L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  140 (390)
T 3o6n_A           74 LNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT  140 (390)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EECCCCcccccChh--hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence            45555666555555  55555666666666666555555555555555555555555555555544433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.78  E-value=1.1e-08  Score=83.70  Aligned_cols=68  Identities=28%  Similarity=0.403  Sum_probs=41.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++++++.  .|.++++|+.|++++|+++.+++.+|.++++|++|++++|.+..+.+..|..+.
T Consensus        37 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  104 (606)
T 3vq2_A           37 IDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT  104 (606)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred             EECCCCCcCEeChh--hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence            55666666666665  566666666666666666666665566666666666666666666555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.78  E-value=1.5e-08  Score=77.09  Aligned_cols=68  Identities=25%  Similarity=0.406  Sum_probs=62.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|++|++++|+++.+.+..|..+++|++|++++|+++.++...+..+.
T Consensus        57 L~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~  124 (330)
T 1xku_A           57 LDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ  124 (330)
T ss_dssp             EECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCC
T ss_pred             EECCCCcCCEeChh--hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhccccc
Confidence            78999999999998  899999999999999999999888899999999999999999998887776665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.77  E-value=1.4e-08  Score=78.93  Aligned_cols=68  Identities=19%  Similarity=0.342  Sum_probs=60.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|++|++++|+++.+++..|..+++|++|++++|.+..+++..|..++
T Consensus        98 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  165 (390)
T 3o6n_A           98 LYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT  165 (390)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT
T ss_pred             EECCCCCCCcCCHH--HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC
Confidence            78899999999888  889999999999999999999888888899999999999999988888777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.76  E-value=1.7e-08  Score=76.83  Aligned_cols=68  Identities=26%  Similarity=0.429  Sum_probs=59.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|.++.+++.  .|.++++|+.|++++|+++.+.+..|..+++|++|++++|++..++...+..+.
T Consensus        59 L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~  126 (332)
T 2ft3_A           59 LDLQNNDISELRKD--DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV  126 (332)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCC
T ss_pred             EECCCCcCCccCHh--HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCC
Confidence            78899999999888  899999999999999999999888898899999999999998888877765555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.76  E-value=1.3e-08  Score=82.38  Aligned_cols=68  Identities=26%  Similarity=0.351  Sum_probs=48.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++.+|..+++|++|++++|.+..+++..|..+.
T Consensus        33 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (570)
T 2z63_A           33 LDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS  100 (570)
T ss_dssp             EECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred             EEccCCccCccChh--HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence            66777777777766  677777777777777777777777777777777777777777777666665554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.75  E-value=1.3e-08  Score=74.07  Aligned_cols=66  Identities=27%  Similarity=0.394  Sum_probs=57.5

Q ss_pred             EEecCC-CCceeeCCccccCCCccCc-eeeccCCcCCccCccccCCCCCCCEEeccCCc-ccccCccccCCC
Q psy10386          2 IEIWGG-QLSSIFEKVATSGGLHNLD-SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH-IHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N-~l~~~~~~~~~f~~l~~L~-~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~-l~~~~~~~~~~l   70 (166)
                      |++++| +++.+++.  .|.++++|+ .|++++|+++.+++..|.. ++|+.|++++|+ ++.+++..|..+
T Consensus       135 L~l~~N~~l~~i~~~--~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          135 LEITDNPYMTSIPVN--AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             EEEESCTTCCEECTT--TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             EECCCCcchhhcCcc--cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhcc
Confidence            788899 99999988  899999999 9999999999888888876 789999999995 888888888766

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.75  E-value=2.4e-08  Score=75.91  Aligned_cols=61  Identities=25%  Similarity=0.405  Sum_probs=41.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+++.+.+.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|++..++.
T Consensus       197 L~l~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~  257 (330)
T 1xku_A          197 LHLDGNKITKVDAA--SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG  257 (330)
T ss_dssp             EECTTSCCCEECTG--GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred             EECCCCcCCccCHH--HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence            56667777766666  66677777777777777776666666666667777777776666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.74  E-value=1.7e-08  Score=81.03  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|.++++++.    ..+++|+.|++++|.++.+++. |..+++|+.|++++|.+++++.. +..++        +|
T Consensus       174 L~Ls~N~l~~~~~~----~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          174 LNLQYNFIYDVKGQ----VVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGN  247 (487)
T ss_dssp             EECTTSCCCEEECC----CCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTC
T ss_pred             EecCCCcccccccc----ccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCC
Confidence            56666666666543    2477788888888888887776 66788888888888888887664 33333        89


Q ss_pred             CccccCC
Q psy10386         74 PLVCTCD   80 (166)
Q Consensus        74 p~~C~C~   80 (166)
                      ++.|+|-
T Consensus       248 ~l~c~~~  254 (487)
T 3oja_A          248 GFHCGTL  254 (487)
T ss_dssp             CBCHHHH
T ss_pred             CCcCcch
Confidence            9999653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.74  E-value=1.1e-08  Score=82.58  Aligned_cols=68  Identities=24%  Similarity=0.345  Sum_probs=47.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++++++.  .|.++++|++|++++|+++.+++.+|..+++|++|++++|.++.+++..|..+.
T Consensus        31 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           31 LDLSFNKITYIGHG--DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             EECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             EECcCCccCccChh--hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence            66777777777666  677777777777777777777766677777777777777777776666555544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.73  E-value=1.5e-08  Score=77.16  Aligned_cols=62  Identities=27%  Similarity=0.350  Sum_probs=45.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..|..+++|+.|++++|+++.++..
T Consensus       198 L~l~~n~i~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~  259 (332)
T 2ft3_A          198 LHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG  259 (332)
T ss_dssp             CBCCSSCCCCCCTT--SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred             EECCCCcCCccCHH--HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence            56777777777766  677777777777777777777776677777777777777777766654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=1.5e-08  Score=77.51  Aligned_cols=58  Identities=24%  Similarity=0.258  Sum_probs=54.2

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      .|+|++|+|+++++.  .|.++++|+.|+|++|+|+.+++..|..+. |+.|++++|++..
T Consensus        60 ~L~l~~N~l~~~~~~--~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           60 NLTIVKSGLRFVAPD--AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             EEECCSSCCCEECTT--GGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             EEECCCCccceeCHH--HhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            389999999999999  999999999999999999999999997776 9999999999874

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.72  E-value=2.1e-08  Score=82.26  Aligned_cols=67  Identities=25%  Similarity=0.445  Sum_probs=35.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|.++.+++.  .|.++++|+.|++++|.++.+++..|..+++|++|++++|.+..+++..|..+
T Consensus        80 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  146 (597)
T 3oja_B           80 LNLNDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT  146 (597)
T ss_dssp             EECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             EECCCCCCCCCChH--HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccC
Confidence            45555555555554  45555555555555555555555555555555555555555555555444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.72  E-value=1.6e-08  Score=82.17  Aligned_cols=68  Identities=21%  Similarity=0.303  Sum_probs=51.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|.++.+++.  .|.++++|+.|++++|+++.+++++|.++++|++|++++|+++.++...+..+.
T Consensus        57 L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~  124 (562)
T 3a79_B           57 LSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLR  124 (562)
T ss_dssp             EECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCS
T ss_pred             EECCCCCccccChh--hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCC
Confidence            67788888887777  788888888888888888888777787788888888888887777765333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.71  E-value=2.7e-08  Score=81.67  Aligned_cols=68  Identities=19%  Similarity=0.342  Sum_probs=62.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|.++.+++.  .|.++++|+.|++++|.++.+++..|..+++|++|++++|.+..+++..|..++
T Consensus       104 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  171 (597)
T 3oja_B          104 LYMGFNAIRYLPPH--VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT  171 (597)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             EECCCCcCCCCCHH--HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence            78999999999998  899999999999999999999999889999999999999999999988887766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.71  E-value=1.2e-08  Score=70.94  Aligned_cols=63  Identities=21%  Similarity=0.207  Sum_probs=56.5

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCcc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      .|++++|+++.+++.  .|.++++|+.|++++|+++.++. ..+..+++|+.|++++|++..++..
T Consensus        68 ~L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~  131 (176)
T 1a9n_A           68 TLLVNNNRICRIGEG--LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY  131 (176)
T ss_dssp             EEECCSSCCCEECSC--HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTH
T ss_pred             EEECCCCcccccCcc--hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhH
Confidence            379999999999988  78999999999999999999876 4688899999999999999887653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.70  E-value=1e-08  Score=70.59  Aligned_cols=66  Identities=24%  Similarity=0.321  Sum_probs=56.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~   71 (166)
                      |++++|.++.+  .  .|.++++|+.|++++|+++...+..+..+++|+.|++++|.++.++. ..+..++
T Consensus        54 L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  120 (168)
T 2ell_A           54 LSLINVGLISV--S--NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE  120 (168)
T ss_dssp             EEEESSCCCCC--S--SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred             EeCcCCCCCCh--h--hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence            78999999988  5  78999999999999999999767777779999999999999998764 5555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.69  E-value=2e-08  Score=69.18  Aligned_cols=62  Identities=23%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             EEecCCCCc--eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386          2 IEIWGGQLS--SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS   68 (166)
Q Consensus         2 L~ls~N~l~--~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~   68 (166)
                      |++++|+++  .++.   .|..+++|+.|++++|.++.+  ..|..+++|++|++++|.+....+..+.
T Consensus        29 L~l~~n~l~~~~i~~---~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   92 (168)
T 2ell_A           29 LVLDNCKSNDGKIEG---LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE   92 (168)
T ss_dssp             EECCSCBCBTTBCSS---CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred             EECCCCCCChhhHHH---HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence            789999998  6654   688999999999999999998  6688999999999999999985555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.66  E-value=2.3e-08  Score=75.73  Aligned_cols=67  Identities=22%  Similarity=0.203  Sum_probs=49.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|++++..+.  .|.++++|+.|++++|+++...+. +..+++|+.|++++|++.+..+..|..++
T Consensus       202 L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  268 (313)
T 1ogq_A          202 VDLSRNMLEGDASV--LFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK  268 (313)
T ss_dssp             EECCSSEEEECCGG--GCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCT
T ss_pred             EECcCCcccCcCCH--HHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCc
Confidence            67777777777777  778888888888888888766555 66778888888888888766666555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.63  E-value=3.8e-08  Score=80.56  Aligned_cols=57  Identities=30%  Similarity=0.455  Sum_probs=32.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|+|++++    .|.++++|+.|++++|+|+.+|. .|..+++|+.|++++|++++++
T Consensus       446 L~Ls~n~l~~lp----~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp  502 (567)
T 1dce_A          446 LHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD  502 (567)
T ss_dssp             EECTTSCCSSCC----CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG
T ss_pred             EEecCCCCCCCc----CccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc
Confidence            556666666553    24555666666666666665543 3555666666666666665554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.62  E-value=2.4e-08  Score=80.28  Aligned_cols=62  Identities=21%  Similarity=0.324  Sum_probs=42.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~   65 (166)
                      |++++|+++++++.  .|.++++|++|++++|+++.+.+..|.++++|++|++++|+++.++..
T Consensus        26 L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~   87 (520)
T 2z7x_B           26 LNISQNYISELWTS--DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH   87 (520)
T ss_dssp             EECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred             EECCCCcccccChh--hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc
Confidence            56666666666665  666677777777777777766666666667777777777766666655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.62  E-value=6.1e-08  Score=72.82  Aligned_cols=67  Identities=27%  Similarity=0.463  Sum_probs=36.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCc-cCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~-i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|.++...+.  .|.++++|+.|++++|.++. ..+..|..+++|+.|++++|.++.+.+..|..+
T Consensus       131 L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  198 (306)
T 2z66_A          131 LDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL  198 (306)
T ss_dssp             EECTTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             EECCCCcCCccchh--hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence            45555555555555  55555555555555555554 333445555555555555555555555444443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.61  E-value=6e-08  Score=80.33  Aligned_cols=68  Identities=25%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+++.  .|.++++|++|++++|+++.+++..|..+++|++|++++|.+.++.+..|..+.
T Consensus        78 L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  145 (680)
T 1ziw_A           78 LNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE  145 (680)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT
T ss_pred             EECCCCccCccChh--hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc
Confidence            55666666666665  566666666666666666666666666666666666666666665555544433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.61  E-value=2.5e-08  Score=67.26  Aligned_cols=62  Identities=16%  Similarity=0.141  Sum_probs=48.3

Q ss_pred             EEecCCCCc--eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccC
Q psy10386          2 IEIWGGQLS--SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS   68 (166)
Q Consensus         2 L~ls~N~l~--~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~   68 (166)
                      |++++|.++  .++ .  .|..+++|+.|++++|.++.+  ..|..+++|+.|++++|.+++..+..+.
T Consensus        22 L~l~~n~l~~~~~~-~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   85 (149)
T 2je0_A           22 LVLDNSRSNEGKLE-G--LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE   85 (149)
T ss_dssp             EECTTCBCBTTBCC-S--CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH
T ss_pred             EEccCCcCChhHHH-H--HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh
Confidence            788888888  454 4  578888899999999988888  5577888899999999988874444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.53  E-value=1.7e-07  Score=79.91  Aligned_cols=68  Identities=28%  Similarity=0.382  Sum_probs=55.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.+.+.  .|.++++|+.|++++|+++.+.+..|..+++|+.|++++|.+..+++..|..++
T Consensus       295 L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  362 (844)
T 3j0a_A          295 LNLAYNKINKIADE--AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE  362 (844)
T ss_dssp             EEEESCCCCEECTT--TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred             EECCCCcCCCCChH--HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence            67788888888777  788888888888888888888777788888888888888888888877776665

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.52  E-value=7.4e-08  Score=80.99  Aligned_cols=70  Identities=27%  Similarity=0.355  Sum_probs=53.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |+|++|.|+.++.   .|.++++|+.|+|++|+|+.++.. |..+++|++|+|++|.|+.++.. |..+.        +|
T Consensus       252 L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          252 LYLNGNSLTELPA---EIKNLSNLRVLDLSHNRLTSLPAE-LGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CBCTTSCCSCCCG---GGGGGTTCCEEECTTSCCSSCCSS-GGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred             EEeeCCcCcccCh---hhhCCCCCCEEeCcCCcCCccChh-hcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence            6788888886664   577888888888888888877444 67788888888888888888765 55554        66


Q ss_pred             Ccc
Q psy10386         74 PLV   76 (166)
Q Consensus        74 p~~   76 (166)
                      ++.
T Consensus       327 ~l~  329 (727)
T 4b8c_D          327 PLE  329 (727)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.48  E-value=1e-07  Score=72.12  Aligned_cols=57  Identities=25%  Similarity=0.311  Sum_probs=32.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      |++++|++++..+.  .|.++++|++|++++|+++...+..|..+++|++|++++|+++
T Consensus       106 L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          106 LYITHTNVSGAIPD--FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             EEEEEECCEEECCG--GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             EECcCCeeCCcCCH--HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc
Confidence            45555555544444  5555566666666666555444444555566666666666655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.46  E-value=2e-07  Score=70.45  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=42.0

Q ss_pred             EEecCCCCce---eeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCcccc
Q psy10386          2 IEIWGGQLSS---IFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         2 L~ls~N~l~~---~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~~~~   67 (166)
                      |++++|+++.   ++..  .|.++++|+.|++++|+++...+ ..+..+++|+.|++++|+++.++...+
T Consensus       206 L~L~~N~l~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~  273 (312)
T 1wwl_A          206 LALRNAGMETPSGVCSA--LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP  273 (312)
T ss_dssp             EECTTSCCCCHHHHHHH--HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred             EECCCCcCcchHHHHHH--HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence            6677777773   3334  45566777777777777776553 445556777777777777777666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.46  E-value=1.5e-07  Score=63.47  Aligned_cols=58  Identities=26%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|.++.+  .  .|.++++|+.|++++|+++...+..+..+++|+.|++++|+++.++
T Consensus        47 L~l~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           47 LSTINVGLTSI--A--NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLS  104 (149)
T ss_dssp             EECTTSCCCCC--T--TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHH
T ss_pred             EECcCCCCCCc--h--hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChH
Confidence            67888888887  4  6788888888888888888866666767888888888888887764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.44  E-value=3.8e-07  Score=68.77  Aligned_cols=69  Identities=22%  Similarity=0.153  Sum_probs=32.7

Q ss_pred             EEecCCCCceeeCCcc-ccCCCccCceeeccCCcCCccCccccCCC---CCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVA-TSGGLHNLDSLVLAHNQLRTIPPRVFAHL---PLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~-~f~~l~~L~~L~ls~N~l~~i~~~~f~~l---~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|+++.++.... .|.++++|++|++++|+++.+.|..+..+   ++|++|++++|+++.++...+..+
T Consensus       202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L  274 (310)
T 4glp_A          202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKL  274 (310)
T ss_dssp             CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCC
T ss_pred             EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCC
Confidence            4555555544332100 13445555555555555555533222232   455555555555555555444333

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.44  E-value=2.4e-07  Score=78.16  Aligned_cols=78  Identities=21%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|++++..+.  .|.++++|+.|++++|+++...+..|..+++|+.|++++|++.+..+..+..++        +|
T Consensus       471 L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          471 LILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             EECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             EEecCCcccCcCCH--HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            56777777766666  677777777777777777766666677777777777777777765555555544        77


Q ss_pred             CccccCCc
Q psy10386         74 PLVCTCDL   81 (166)
Q Consensus        74 p~~C~C~l   81 (166)
                      ++.+.+..
T Consensus       549 ~l~g~ip~  556 (768)
T 3rgz_A          549 LFNGTIPA  556 (768)
T ss_dssp             EEESBCCG
T ss_pred             ccCCcCCh
Confidence            77776553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.42  E-value=2.5e-07  Score=65.38  Aligned_cols=66  Identities=15%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|.++.++    .+.++++|+.|++++|+++...+..|..+++|++|++++|.++...+..+..++
T Consensus        71 L~l~~n~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~  136 (197)
T 4ezg_A           71 LTINNIHATNYN----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP  136 (197)
T ss_dssp             EEEESCCCSCCG----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred             EEccCCCCCcch----hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence            677778766553    466788888888888888775556677788888888888888765555555444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=3.8e-07  Score=69.38  Aligned_cols=65  Identities=31%  Similarity=0.394  Sum_probs=59.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCC-EEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLN-SLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~-~l~l~~N~l~~~~~~~~~~l   70 (166)
                      +++++|+++.+++.  +|.++.+|+.+++++| ++.|+.++|.++.+|+ .+++.+ .+..|.+++|.++
T Consensus       231 l~L~~n~i~~I~~~--aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c  296 (329)
T 3sb4_A          231 LDISKTNATTIPDF--TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGC  296 (329)
T ss_dssp             EECTTBCCCEECTT--TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTC
T ss_pred             EECCCCCcceecHh--hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCC
Confidence            68889999999999  9999999999999998 8999999999999999 999988 8999999998754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.40  E-value=3.1e-07  Score=75.22  Aligned_cols=72  Identities=21%  Similarity=0.268  Sum_probs=62.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC-ccccCCCC--------C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD-PAAFSGLE--------D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~-~~~~~~l~--------~   72 (166)
                      |++++|+|+.+|.   .|.++++|+.|+|++|+++.++  .|..+++|+.|++++|+++++. +..|..++        +
T Consensus       468 L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~  542 (567)
T 1dce_A          468 LDLSHNRLRALPP---ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG  542 (567)
T ss_dssp             EECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             eecCcccccccch---hhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence            8999999998865   6899999999999999999986  5889999999999999999996 66666665        7


Q ss_pred             CCcccc
Q psy10386         73 NPLVCT   78 (166)
Q Consensus        73 Np~~C~   78 (166)
                      |++...
T Consensus       543 N~l~~~  548 (567)
T 1dce_A          543 NSLCQE  548 (567)
T ss_dssp             SGGGGS
T ss_pred             CcCCCC
Confidence            777543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.40  E-value=1.3e-07  Score=71.43  Aligned_cols=55  Identities=16%  Similarity=0.197  Sum_probs=26.9

Q ss_pred             EEecCCCCceeeCCccccCCC-----ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGL-----HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHI   59 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l-----~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l   59 (166)
                      |++++|+++++ +.  .|.++     ++|++|++++|+++.+++..|..+++|++|++++|++
T Consensus       126 L~Ls~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          126 LNLRNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             EEEESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred             EEccCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence            34444444444 23  34443     4455555555555555544455555555555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.37  E-value=3.9e-07  Score=67.40  Aligned_cols=54  Identities=24%  Similarity=0.374  Sum_probs=26.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      |++++|+++.+++.  .+   ++|+.|++++|+++.++  .+..+++|+.|++++|+++.+
T Consensus        90 L~L~~N~l~~l~~~--~~---~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           90 LSVNRNRLKNLNGI--PS---ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSI  143 (263)
T ss_dssp             EECCSSCCSCCTTC--CC---SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBC
T ss_pred             EECCCCccCCcCcc--cc---CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCC
Confidence            45555555554432  21   45555555555555442  244455555555555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.37  E-value=1.6e-07  Score=78.98  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=55.3

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~   67 (166)
                      .|+|++|+|+.++.   .|.++++|++|+|++|.|+.++.. |..+++|+.|+|++|+|++..+..+
T Consensus       274 ~L~Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          274 VLDLSHNRLTSLPA---ELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             EEECTTSCCSSCCS---SGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             EEeCcCCcCCccCh---hhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccCCCChHHH
Confidence            38999999998855   689999999999999999999776 8899999999999999987655444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.36  E-value=6.7e-07  Score=73.98  Aligned_cols=73  Identities=19%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeec------cCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC----
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVL------AHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE----   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~l------s~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~----   71 (166)
                      |++++|++++++.   .+.++++|+.|++      ++|++....+..|..+++|+.|++++|++..++...+..+.    
T Consensus       518 L~Ls~N~l~~ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~L  594 (636)
T 4eco_A          518 IDLSYNSFSKFPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI  594 (636)
T ss_dssp             EECCSSCCSSCCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEEC
T ss_pred             EECCCCCCCCcCh---hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEEC
Confidence            4455555555332   3444555555555      23444444444455566666666666666666655444444    


Q ss_pred             -CCCccc
Q psy10386         72 -DNPLVC   77 (166)
Q Consensus        72 -~Np~~C   77 (166)
                       +|++.|
T Consensus       595 s~N~l~~  601 (636)
T 4eco_A          595 KDNPNIS  601 (636)
T ss_dssp             CSCTTCE
T ss_pred             cCCCCcc
Confidence             666665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.33  E-value=7.9e-07  Score=67.76  Aligned_cols=66  Identities=27%  Similarity=0.412  Sum_probs=55.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.++.   .|.++++|+.|++++|+++.+++. |..+++|+.|++++|.+.+..+..|..++
T Consensus       188 L~L~~n~l~~lp~---~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~  253 (328)
T 4fcg_A          188 LRLEWTGIRSLPA---SIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRA  253 (328)
T ss_dssp             EEEEEECCCCCCG---GGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTCTTCCBCCCCTTCCC
T ss_pred             EECcCCCcCcchH---hhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCCcchhhhHHHhcCCC
Confidence            7889999997765   588899999999999999988775 77889999999999988777777776665

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.32  E-value=8.2e-07  Score=67.66  Aligned_cols=67  Identities=21%  Similarity=0.150  Sum_probs=56.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++++++   .|.++++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..|..++
T Consensus       211 L~L~~N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          211 LKIRNSPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             EEEESSCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred             EEccCCCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence            7899999998876   588999999999999988888788899999999999999887666665565554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=8.2e-07  Score=67.52  Aligned_cols=65  Identities=20%  Similarity=0.192  Sum_probs=60.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCc-eeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLD-SLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~-~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      +++.+| ++.+++.  +|.++.+|+ .+++++ .++.|++++|.++.+|+.+++++|.+..++.++|.++
T Consensus       255 l~l~~n-i~~I~~~--aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          255 IKLPHN-LKTIGQR--VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             EECCTT-CCEECTT--TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             EECCcc-cceehHH--HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            577787 9999999  999999999 999999 8999999999999999999999999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.30  E-value=3.9e-07  Score=73.17  Aligned_cols=59  Identities=24%  Similarity=0.319  Sum_probs=52.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++.+++.  .|.++++|+.|+|++|.++.+++  |..+++|+.|++++|.++.+++
T Consensus        39 L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           39 LDLSGNPLSQISAA--DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             EECCSSCCCCCCGG--GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE
T ss_pred             EEeeCCcCCCCCHH--HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC
Confidence            78999999999988  89999999999999999998776  8888899998888888876653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.29  E-value=8e-07  Score=62.72  Aligned_cols=64  Identities=17%  Similarity=0.228  Sum_probs=52.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|.++.++ .   +..+++|+.|++++|.++.++  .+..+++|++|++++|.++...+..|..++
T Consensus        49 L~l~~n~i~~l~-~---l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           49 ITLANINVTDLT-G---IEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             EEEESSCCSCCT-T---GGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             EeccCCCccChH-H---HhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            788999999776 3   678899999999999887775  478899999999999999886666666665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.27  E-value=4.7e-07  Score=68.53  Aligned_cols=60  Identities=22%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCcccc-CCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f-~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|+++.+++.  .|.++++|+.|++++|+++.+++..+ ..+++|+.|++++|.++.++
T Consensus       125 L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          125 IYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             EECCSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             EECCCCCCCCccch--hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            44555555555554  55555556666666665555544433 23455555555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.27  E-value=6.1e-07  Score=68.37  Aligned_cols=70  Identities=33%  Similarity=0.432  Sum_probs=54.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|.++.+  .  .+..+++|+.|++++|+++.++  .+..+++|+.|++++|++....+..|..++        +|
T Consensus       248 L~l~~n~l~~~--~--~~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          248 LEIGTNQISDI--N--AVKDLTKLKMLNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             EECCSSCCCCC--G--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             EECCCCccCCC--h--hHhcCCCcCEEEccCCccCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            67888888876  3  5778888888888888888873  377888888888888888887776666554        66


Q ss_pred             Cccc
Q psy10386         74 PLVC   77 (166)
Q Consensus        74 p~~C   77 (166)
                      ++..
T Consensus       322 ~l~~  325 (347)
T 4fmz_A          322 HITD  325 (347)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            6654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.26  E-value=1.4e-06  Score=65.35  Aligned_cols=57  Identities=30%  Similarity=0.441  Sum_probs=36.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+++.++    .+..+++|+.|++++|+++.+  ..+..+++|+.|++++|+++.+++
T Consensus       117 L~L~~n~i~~~~----~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          117 LSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             EECTTSCCCCCG----GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             EECCCCcCCCCh----hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            566677666652    455666666666666666666  235566666666666666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.25  E-value=1.6e-06  Score=64.06  Aligned_cols=60  Identities=22%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~   67 (166)
                      |++++|.++.++    .+..+++|+.|++++|+++.+++  |..+++|+.|++++|+++.++....
T Consensus        46 L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~  105 (263)
T 1xeu_A           46 FNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS  105 (263)
T ss_dssp             EECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC
T ss_pred             EECcCCCcccch----HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc
Confidence            667777777665    25667777777777777777766  6677777777777777777655433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.25  E-value=6.4e-08  Score=79.28  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=16.6

Q ss_pred             ceeeccCCcCCccCccccCCCCCCCEEeccCCcccc
Q psy10386         26 DSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus        26 ~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      +.|++++|+|+.++...+. +++|+.|++++|++++
T Consensus       210 ~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          210 IFFRCRENRITHIPENILS-LDPTCTIILEDNPLSS  244 (571)
T ss_dssp             EEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCH
T ss_pred             eEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCC
Confidence            4445555555444444332 4455555555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.23  E-value=1.8e-06  Score=65.07  Aligned_cols=40  Identities=23%  Similarity=0.192  Sum_probs=26.3

Q ss_pred             CCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386         21 GLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus        21 ~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      .+++|+.|++++|+++.+++..|..+++|++|++++|++.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  182 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL  182 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc
Confidence            4556666666666666666666666677777777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.18  E-value=1.6e-06  Score=65.41  Aligned_cols=57  Identities=30%  Similarity=0.480  Sum_probs=34.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+++.+++    +.++++|+.|++++|+++.+++  +..+++|+.|++++|+++.+++
T Consensus       134 L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~  190 (308)
T 1h6u_A          134 LYLDLNQITNISP----LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP  190 (308)
T ss_dssp             EECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             EECCCCccCcCcc----ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh
Confidence            5666666665542    4456666666666666666554  5566666666666666655543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=3.2e-06  Score=72.44  Aligned_cols=66  Identities=21%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccC------CcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAH------NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~------N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|++++++.   .+.++++|+.|++++      |++....|..|..+++|+.|++++|++..++...+..+
T Consensus       758 L~Ls~N~L~~lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L  829 (876)
T 4ecn_A          758 MDVSYNCFSSFPT---QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL  829 (876)
T ss_dssp             EECCSSCCSSCCC---GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSS
T ss_pred             EEeCCCCCCccch---hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCC
Confidence            3444444444332   233444444444433      33333334444455555555555555555555444333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.14  E-value=3.1e-06  Score=63.42  Aligned_cols=55  Identities=31%  Similarity=0.431  Sum_probs=28.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      |++++|+++.++    .+.++++|+.|++++|+++.++  .+..+++|+.|++++|+++.+
T Consensus        95 L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A           95 LFLDENKVKDLS----SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI  149 (291)
T ss_dssp             EECCSSCCCCGG----GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCCCh----hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc
Confidence            455555555532    2445555555555555555542  244555555555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.14  E-value=1.8e-06  Score=71.43  Aligned_cols=62  Identities=24%  Similarity=0.268  Sum_probs=29.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCC-------CCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLP-------LLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~-------~L~~l~l~~N~l~~~~~~   65 (166)
                      |++++|+++.+++.  .|..+++|+.|++++|+++.++...|....       +|+.|++++|+++.++..
T Consensus       438 L~Ls~N~l~~lp~~--~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  506 (636)
T 4eco_A          438 INLSNNQISKFPKE--LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDD  506 (636)
T ss_dssp             EECCSSCCCSCCTH--HHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGG
T ss_pred             EECcCCccCcCCHH--HHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChh
Confidence            34444444444444  444444555555555555544444443322       455555555555544443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.14  E-value=1.7e-06  Score=64.40  Aligned_cols=43  Identities=28%  Similarity=0.421  Sum_probs=28.3

Q ss_pred             CCCccCceeeccCCcCCccCc--cccCCCCCCCEEeccCCccccc
Q psy10386         20 GGLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus        20 ~~l~~L~~L~ls~N~l~~i~~--~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      .++++|+.|+|++|+|+.+++  ..+..+++|+.|+|++|+|+++
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            346677777777777776653  3344567777777777777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.10  E-value=4e-06  Score=63.23  Aligned_cols=56  Identities=30%  Similarity=0.497  Sum_probs=30.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|+++.++    .|.++++|+.|++++|+++.+++  +..+++|+.|++++|.++.++
T Consensus        90 L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  145 (308)
T 1h6u_A           90 LELSGNPLKNVS----AIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNIS  145 (308)
T ss_dssp             EECCSCCCSCCG----GGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             EEccCCcCCCch----hhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCc
Confidence            556666665542    34555555555555555555543  445555555555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.07  E-value=1.2e-06  Score=66.66  Aligned_cols=59  Identities=34%  Similarity=0.448  Sum_probs=54.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+++.+  .  .|..+++|+.|++++|.++...+..|..+++|+.|++++|+++.+++
T Consensus       270 L~l~~n~l~~~--~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          270 LNVGSNQISDI--S--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             EECCSSCCCCC--G--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             EEccCCccCCC--h--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            78999999987  3  68899999999999999999999989999999999999999998876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.05  E-value=2.1e-08  Score=70.99  Aligned_cols=73  Identities=19%  Similarity=0.258  Sum_probs=42.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC--------C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE--------D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~--------~   72 (166)
                      |++++|+++.++.   .+..+++|+.|++++|+++.++  .+..+++|+.|++++|++..++. ..+..++        +
T Consensus        75 L~l~~n~l~~l~~---~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           75 LSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EEEEEEEECSCSS---HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             EECCCCCcccccc---hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence            4556666665543   3445566666666666666654  25556667777777777766543 2333333        6


Q ss_pred             CCccccC
Q psy10386         73 NPLVCTC   79 (166)
Q Consensus        73 Np~~C~C   79 (166)
                      |++.|.|
T Consensus       150 N~l~~~~  156 (198)
T 1ds9_A          150 NPLYNDY  156 (198)
T ss_dssp             CHHHHHH
T ss_pred             Ccccccc
Confidence            7766654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.01  E-value=6.3e-06  Score=67.98  Aligned_cols=57  Identities=30%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |+|++|+++.++    .|..+++|+.|+|++|+++.+  ..|..+++|+.|+|++|.+..+++
T Consensus       114 L~Ls~N~l~~l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          114 LSLEHNGISDIN----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             EECTTSCCCCCG----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             EEecCCCCCCCc----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence            555666665542    345555566666666655555  234555555555555555555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.98  E-value=1.2e-05  Score=68.99  Aligned_cols=62  Identities=13%  Similarity=0.254  Sum_probs=33.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCC-------CCCEEeccCCcccccCcc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLP-------LLNSLELDGNHIHTVDPA   65 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~-------~L~~l~l~~N~l~~~~~~   65 (166)
                      |++++|+++.++..  .|..+++|+.|++++|+++.++...|....       +|+.|++++|+++.++..
T Consensus       678 L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~  746 (876)
T 4ecn_A          678 VTLSYNEIQKFPTE--LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD  746 (876)
T ss_dssp             EECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGG
T ss_pred             EEccCCcCCccCHH--HHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHH
Confidence            45555555555554  445555555555555555555555444332       555555555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.94  E-value=1.2e-05  Score=66.35  Aligned_cols=55  Identities=33%  Similarity=0.480  Sum_probs=26.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      |+|++|+++.+  .  .|..+++|+.|+|++|+++.+++  +..+++|+.|+|++|+++.+
T Consensus       136 L~Ls~N~l~~l--~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l  190 (605)
T 1m9s_A          136 LYLGNNKITDI--T--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL  190 (605)
T ss_dssp             EECCSSCCCCC--G--GGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred             EECCCCccCCc--h--hhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence            44444444444  2  34444455555555555444443  44444555555555544444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.93  E-value=2e-05  Score=62.67  Aligned_cols=61  Identities=18%  Similarity=0.194  Sum_probs=35.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|+++.+     .|..+++|+.|++++|+++.++   +..+++|+.|++++|++++++...+..+
T Consensus       196 L~l~~N~l~~~-----~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          196 LNCDTNNITKL-----DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             EECCSSCCSCC-----CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             EECcCCcCCee-----ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence            34444444443     1345566666666666666654   4556667777777777666665555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.87  E-value=2.7e-05  Score=61.98  Aligned_cols=55  Identities=18%  Similarity=0.324  Sum_probs=32.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|.+++++    .|..+++|+.|++++|+++.++   +..+++|++|++++|.+++++
T Consensus        47 L~Ls~n~l~~~~----~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           47 LDCHNSSITDMT----GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             EECCSSCCCCCT----TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred             EEccCCCcccCh----hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee
Confidence            566666666653    2555666666666666666653   445555555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.86  E-value=2.2e-05  Score=64.99  Aligned_cols=64  Identities=25%  Similarity=0.321  Sum_probs=40.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+|+.++.      .+++|+.|++++|+|+.++.    .+++|+.|++++|+|+.++.. |..++        +|
T Consensus       226 L~Ls~N~L~~lp~------~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          226 LIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGN  294 (622)
T ss_dssp             EECCSSCCSCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSC
T ss_pred             EEccCCccCcCCC------CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCC
Confidence            4555666655542      23566777777777776665    346777888888888777543 44433        77


Q ss_pred             Ccc
Q psy10386         74 PLV   76 (166)
Q Consensus        74 p~~   76 (166)
                      ++.
T Consensus       295 ~l~  297 (622)
T 3g06_A          295 PLS  297 (622)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            776

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.85  E-value=2.4e-05  Score=62.14  Aligned_cols=57  Identities=33%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++.+++    |.++++|++|++++|+++.+++  |..+++|++|++++|.+..+++
T Consensus        73 L~Ls~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  129 (466)
T 1o6v_A           73 INFSNNQLTDITP----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP  129 (466)
T ss_dssp             EECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             EECCCCccCCchh----hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH
Confidence            5566666655542    4455666666666666665554  5566666666666666655543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.79  E-value=3.1e-06  Score=65.14  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=27.1

Q ss_pred             EEecCCCCceeeC----CccccCCCc-cCceeeccCCcCCccCccccCCC-----CCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIFE----KVATSGGLH-NLDSLVLAHNQLRTIPPRVFAHL-----PLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~~----~~~~f~~l~-~L~~L~ls~N~l~~i~~~~f~~l-----~~L~~l~l~~N~l~~   61 (166)
                      |++++|.++....    .  .|.+++ +|+.|++++|+++...+..|..+     ++|+.|++++|.++.
T Consensus        27 L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           27 LDLSLNNLYSISTVELIQ--AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             EECTTSCGGGSCHHHHHH--HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             EEccCCCCChHHHHHHHH--HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            4455555554443    3  444444 45555555555544443333332     444555555554443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.78  E-value=5.3e-05  Score=62.09  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++++++.  .+   ++|+.|++++|+|+.++    ..+++|+.|++++|.+++++.
T Consensus        64 L~Ls~n~L~~lp~~--l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~  117 (571)
T 3cvr_A           64 LQLNRLNLSSLPDN--LP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE  117 (571)
T ss_dssp             EECCSSCCSCCCSC--CC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC
T ss_pred             EEeCCCCCCccCHh--Hc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch
Confidence            56667777666654  32   45666666666666555    124555566666665555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.71  E-value=1.9e-06  Score=60.81  Aligned_cols=60  Identities=25%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc-cccCCCCCCCEEeccCCcccccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP-RVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~-~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      .|++++|+++.++    .|.++++|+.|++++|+++.++. ..+..+++|+.|++++|++....+
T Consensus        97 ~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           97 ELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             EEECcCCcCCcCC----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            3789999999975    47789999999999999998875 568899999999999999987644

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.66  E-value=5.5e-05  Score=60.01  Aligned_cols=57  Identities=23%  Similarity=0.382  Sum_probs=48.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+++++++    +..+++|+.|++++|+++.++  .+..+++|+.|++++|+++.+.+
T Consensus       314 L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~  370 (466)
T 1o6v_A          314 LTLYFNNISDISP----VSSLTKLQRLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP  370 (466)
T ss_dssp             EECCSSCCSCCGG----GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG
T ss_pred             EECcCCcCCCchh----hccCccCCEeECCCCccCCch--hhccCCCCCEEeCCCCccCccch
Confidence            7889999988764    468899999999999999884  47889999999999999987766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.65  E-value=7.3e-05  Score=59.42  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             ccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      ++|++|++++|+++.++  .|..+++|++|++++|++++++
T Consensus       131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp  169 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLP  169 (454)
T ss_dssp             TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccC
Confidence            35555555555555554  2555555555555555555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.64  E-value=8.5e-05  Score=61.45  Aligned_cols=54  Identities=22%  Similarity=0.456  Sum_probs=27.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++.+|..  .+   ++|+.|++++|.++.++.    .+++|+.|++++|+++.++.
T Consensus        45 L~ls~n~L~~lp~~--l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~   98 (622)
T 3g06_A           45 LNVGESGLTTLPDC--LP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV   98 (622)
T ss_dssp             EECCSSCCSCCCSC--CC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC
T ss_pred             EEecCCCcCccChh--hC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC
Confidence            45566666655554  22   455555555555555544    23455555555555544443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.60  E-value=1.8e-05  Score=60.77  Aligned_cols=64  Identities=27%  Similarity=0.300  Sum_probs=54.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc----cccCCCC-CCCEEeccCCcccccCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP----RVFAHLP-LLNSLELDGNHIHTVDPAAF   67 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~----~~f~~l~-~L~~l~l~~N~l~~~~~~~~   67 (166)
                      ++++.|.+++..+.  .+....+|+.|++++|.++....    .+|..++ +|+.|++++|.++......|
T Consensus         3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l   71 (362)
T 3goz_A            3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL   71 (362)
T ss_dssp             EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred             cccccccchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence            57899999988876  55555569999999999999988    7888888 89999999999988765443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.54  E-value=1.9e-05  Score=61.05  Aligned_cols=43  Identities=26%  Similarity=0.139  Sum_probs=20.3

Q ss_pred             cCCCccCceeeccCCcCCcc----Ccccc--CCCCCCCEEeccCCcccc
Q psy10386         19 SGGLHNLDSLVLAHNQLRTI----PPRVF--AHLPLLNSLELDGNHIHT   61 (166)
Q Consensus        19 f~~l~~L~~L~ls~N~l~~i----~~~~f--~~l~~L~~l~l~~N~l~~   61 (166)
                      +..+++|+.|++++|.++..    -+..+  ..+++|+.|++++|.++.
T Consensus       240 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            44445555555555555433    11222  124555555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.50  E-value=0.00016  Score=57.48  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=17.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIP   39 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~   39 (166)
                      |++++|++++++    .|.++++|++|++++|+++.++
T Consensus       136 L~L~~n~l~~lp----~~~~l~~L~~L~l~~N~l~~lp  169 (454)
T 1jl5_A          136 LGVSNNQLEKLP----ELQNSSFLKIIDVDNNSLKKLP  169 (454)
T ss_dssp             EECCSSCCSSCC----CCTTCTTCCEEECCSSCCSCCC
T ss_pred             EECcCCCCCCCc----ccCCCCCCCEEECCCCcCcccC
Confidence            455555555543    2445555555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.49  E-value=7.4e-05  Score=55.50  Aligned_cols=57  Identities=25%  Similarity=0.274  Sum_probs=47.2

Q ss_pred             EEecCCCCceeeC--CccccCCCccCceeeccCCcCCccC-ccccCCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIFE--KVATSGGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~~--~~~~f~~l~~L~~L~ls~N~l~~i~-~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      |+|++|+|+++++  .  .+..+++|+.|+|++|+|+.+. -..+..+ +|+.|++++|++..
T Consensus       175 L~Ls~N~l~~l~~l~~--~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          175 LNLSNNRLYRLDDMSS--IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             EECTTSCCCCCGGGTT--HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             EECCCCCCCCCccchh--HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            8999999999774  4  5778999999999999999883 2334444 99999999999865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.44  E-value=0.00023  Score=55.70  Aligned_cols=65  Identities=14%  Similarity=0.293  Sum_probs=43.9

Q ss_pred             EEecCCCCc-----eeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLS-----SIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~-----~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      +++.+|.+.     .+++.  +|.++++|+.+++. +.++.+..++|.++.+|+.+.+..| +..+..++|.+.
T Consensus       276 l~l~~~~~~~~~~~~I~~~--aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          276 VTTYGSTFNDDPEAMIHPY--CLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             EEEESSCCCCCTTCEECTT--TTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             EEeCCccccCCcccEECHH--HhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            344555443     57777  77777777777777 4477777777777777777777444 677777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.35  E-value=0.00033  Score=54.86  Aligned_cols=61  Identities=15%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             CCCceeeCCccccCCCccCceeeccCCcCC-----ccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLR-----TIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         7 N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~-----~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      +.++.+...  +|.++++|+.+++.+|.+.     .++..+|.++++|+.+++. +.+..|..++|.++
T Consensus       257 ~~i~~I~~~--aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          257 NGVTNIASR--AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN  322 (401)
T ss_dssp             TTCCEECTT--TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred             CCccEEChh--HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence            446666666  7777777777777766655     5667777777777777777 44777777777653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.23  E-value=8.5e-05  Score=56.03  Aligned_cols=56  Identities=9%  Similarity=0.131  Sum_probs=25.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCcc-CccccCCCCCCCEEeccCCccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTI-PPRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i-~~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      |++++|.+.+..+.   +.++++|+.|++++|.++.. .+..+..+++|+.|++++|.+.
T Consensus        75 L~l~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~  131 (336)
T 2ast_B           75 FRCPRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS  131 (336)
T ss_dssp             EECTTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC
T ss_pred             EEcCCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC
Confidence            34445554444443   22345555555555544432 2233444444555555544443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.20  E-value=7.4e-05  Score=56.38  Aligned_cols=57  Identities=16%  Similarity=0.136  Sum_probs=32.4

Q ss_pred             EEecCCCCcee-eCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCC-ccc
Q psy10386          2 IEIWGGQLSSI-FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN-HIH   60 (166)
Q Consensus         2 L~ls~N~l~~~-~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N-~l~   60 (166)
                      |++++|.++.. .+.  .+.++++|+.|++++|.++...+..+..+++|++|++++| .++
T Consensus        98 L~L~~~~l~~~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~  156 (336)
T 2ast_B           98 MDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS  156 (336)
T ss_dssp             EECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC
T ss_pred             EEccCCCcCHHHHHH--HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            55666665542 223  4556666666666666665544445555666666666666 344

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.12  E-value=0.00014  Score=56.19  Aligned_cols=59  Identities=14%  Similarity=0.173  Sum_probs=36.2

Q ss_pred             EEecCCCCce-----eeCCccccCCCccCceeeccCCcCC----ccCccccCCCCCCCEEeccCCccccc
Q psy10386          2 IEIWGGQLSS-----IFEKVATSGGLHNLDSLVLAHNQLR----TIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         2 L~ls~N~l~~-----~~~~~~~f~~l~~L~~L~ls~N~l~----~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      |++++|+++.     +.+.  .+..+++|+.|++++|.++    ..-+..+..+++|+.|++++|.++..
T Consensus       192 L~L~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             EECcCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchh
Confidence            5666666661     3333  4566677777777777773    22233456677777777777777543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.08  E-value=0.0008  Score=51.74  Aligned_cols=62  Identities=24%  Similarity=0.392  Sum_probs=53.3

Q ss_pred             CCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         7 N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      +.+..+...  +|.+..+|+.+.+.++.++.|...+|.+..+|+.+.+..+ ++.|...+|.+..
T Consensus       272 ~~i~~i~~~--aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          272 AKVKTVPYL--LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             CCCSEECTT--TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ccceecccc--ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            457788888  8999999999999999999999999999999999999754 8889988887643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.99  E-value=0.00045  Score=45.57  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=31.6

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCC
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLR   36 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~   36 (166)
                      .|+|++|+|+.++++  .|.++++|+.|+|++|.+.
T Consensus        35 ~L~Ls~N~l~~l~~~--~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           35 ELVLTGNNLTALPPG--LLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECTTSCCSSCCTT--TGGGCTTCCEEECCSSCCB
T ss_pred             EEECCCCcCCccChh--hhhhccccCEEEecCCCee
Confidence            389999999999999  9999999999999999774

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.98  E-value=0.0015  Score=50.57  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386          8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG   69 (166)
Q Consensus         8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~   69 (166)
                      .++.+...  +|.+..+|+.+++..+ ++.|...+|.+..+|+.+++..| +..|...+|.+
T Consensus       307 ~i~~I~~~--aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          307 SVKFIGEE--AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             TCCEECTT--TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             ccceechh--hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            46677777  7888888888887644 77787888888788888888766 77777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.97  E-value=0.0016  Score=50.09  Aligned_cols=61  Identities=20%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      .++.+...  +|.+..+|+.+.+..+ ++.+...+|.+..+|+.+.+.++.+..|..++|.+..
T Consensus       250 ~v~~I~~~--aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          250 NVTSIGSF--LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TCCEECTT--TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             CccEeCcc--ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            37788888  8999999999999754 8899999999999999999999999999999998644

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.66  E-value=0.0003  Score=54.53  Aligned_cols=58  Identities=16%  Similarity=0.052  Sum_probs=36.7

Q ss_pred             EEecCCCCceeeCCcccc-----CCCccCceeeccCCcCCccCcc----ccCCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATS-----GGLHNLDSLVLAHNQLRTIPPR----VFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f-----~~l~~L~~L~ls~N~l~~i~~~----~f~~l~~L~~l~l~~N~l~~   61 (166)
                      |+|++|.++.....  .+     ...++|+.|+|++|.++.....    ++...++|++|++++|.++.
T Consensus       131 L~Ls~n~l~~~~~~--~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~  197 (372)
T 3un9_A          131 LGLQLNSLGPEACK--DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD  197 (372)
T ss_dssp             EECCSSCCCHHHHH--HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred             hhcCCCCCCHHHHH--HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence            67777877654433  33     2346778888888877653222    23556777888888877754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.62  E-value=0.0039  Score=48.29  Aligned_cols=59  Identities=19%  Similarity=0.327  Sum_probs=35.1

Q ss_pred             CCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386          7 GQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG   69 (166)
Q Consensus         7 N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~   69 (166)
                      +.++.++..  +|.+..+|+.+++..+ ++.|...+|.+..+|+.+.+..+ +..|...+|.+
T Consensus       297 ~~i~~I~~~--aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          297 SRITELPES--VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             TTCCEECTT--TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred             CcccccCce--eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence            345556665  6666666666666543 56666666666666666666433 56666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.60  E-value=0.0002  Score=56.29  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=41.1

Q ss_pred             EEecCCCCceee----CCccccCCCccCceeeccCCcCCccCccccC-----CCCCCCEEeccCCccc
Q psy10386          2 IEIWGGQLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIPPRVFA-----HLPLLNSLELDGNHIH   60 (166)
Q Consensus         2 L~ls~N~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~-----~l~~L~~l~l~~N~l~   60 (166)
                      |++++|.++...    +.  .+..+++|+.|++++|.++......+.     ..++|+.|++++|.++
T Consensus       318 L~L~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          318 LWVKSCSFTAACCSHFSS--VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             EECTTSCCBGGGHHHHHH--HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             eEcCCCCCchHHHHHHHH--HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            778888887642    23  456678899999999988765443332     2568899999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.39  E-value=0.00089  Score=52.54  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=15.5

Q ss_pred             CceeeccCCcCCcc----CccccCCCCCCCEEeccCCcc
Q psy10386         25 LDSLVLAHNQLRTI----PPRVFAHLPLLNSLELDGNHI   59 (166)
Q Consensus        25 L~~L~ls~N~l~~i----~~~~f~~l~~L~~l~l~~N~l   59 (166)
                      |++|++++|+++..    .+..|..+++|+.|++++|.+
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            44444444444421    133344444444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.33  E-value=0.00069  Score=52.48  Aligned_cols=59  Identities=15%  Similarity=0.076  Sum_probs=33.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCcccc-----CCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVF-----AHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f-----~~l~~L~~l~l~~N~l~~   61 (166)
                      |+|++|.++...... .+..+.+|+.|+|++|.++......+     ...++|+.|++++|.++.
T Consensus       106 L~Ls~n~l~~~~~~~-l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~  169 (372)
T 3un9_A          106 VNLASCQLDPAGLRT-LLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA  169 (372)
T ss_dssp             EECTTCCCCHHHHHH-THHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHH
T ss_pred             EEecCCCCCHHHHHH-HHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCCh
Confidence            566777665432210 22345567777777777765433332     234667777777777644

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.08  E-value=0.0063  Score=47.09  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=49.2

Q ss_pred             CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          8 QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         8 ~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      .++.+...  +|.+..+|+.+.+..+ ++.|...+|.+..+|+.+++.++ +..+...+|.+..
T Consensus        58 ~VtsIg~~--AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~  117 (394)
T 4fs7_A           58 DVVSIGYA--AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCY  117 (394)
T ss_dssp             EEEEECTT--TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred             eEeEhHHH--HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccc
Confidence            35667788  8999999999999754 88999999999999999999755 7888888887654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.44  E-value=0.0028  Score=51.27  Aligned_cols=41  Identities=22%  Similarity=0.248  Sum_probs=18.4

Q ss_pred             CCCccCceeeccCCcCCccC-ccccCCCCCCCEEeccCCccc
Q psy10386         20 GGLHNLDSLVLAHNQLRTIP-PRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus        20 ~~l~~L~~L~ls~N~l~~i~-~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      .++++|+.|++++|.++... +.....+++|+.|++++|+++
T Consensus       485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            44455555555555543211 111223455555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.28  E-value=0.0031  Score=43.80  Aligned_cols=58  Identities=9%  Similarity=0.063  Sum_probs=37.4

Q ss_pred             EEecCC-CCceee----CCccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGG-QLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N-~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      |+|++| .+..-.    ..  .+...++|+.|+|++|.+..-.    ...+...++|++|++++|.+..
T Consensus        41 L~L~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           41 VNLNNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             EECTTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             EEecCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            677777 775421    12  3455678888888888876422    2234445678888888888754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.23  E-value=0.039  Score=42.59  Aligned_cols=50  Identities=22%  Similarity=0.362  Sum_probs=27.7

Q ss_pred             ccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCC
Q psy10386         18 TSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG   69 (166)
Q Consensus        18 ~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~   69 (166)
                      +|.+..+|+.+.+. +.++.++..+|.+..+|+.+++..+ ++.|...+|.+
T Consensus       283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~  332 (394)
T 4gt6_A          283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG  332 (394)
T ss_dssp             TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred             ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence            45555555555553 3455566666666666666666543 55565555554

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=94.35  E-value=0.1  Score=32.57  Aligned_cols=55  Identities=15%  Similarity=0.173  Sum_probs=46.9

Q ss_pred             cCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccccc
Q psy10386          5 WGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTV   62 (166)
Q Consensus         5 s~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~   62 (166)
                      .+..++.+...  +|.+..+|+.+.+..+ ++.|...+|.+..+|+.+.+.+..-..+
T Consensus         4 ~g~~vt~I~~~--aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~P~~~   58 (100)
T 2lz0_A            4 EGEPVVGMDKS--LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGEDPSAY   58 (100)
T ss_dssp             CCCCCCSSCSC--TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSCGGGC
T ss_pred             CCCccCEecHH--HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCCCCeE
Confidence            35678899999  9999999999999976 7999999999999999999987654333

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=94.34  E-value=0.0048  Score=49.86  Aligned_cols=39  Identities=13%  Similarity=0.089  Sum_probs=25.6

Q ss_pred             CccCceeeccCCcCCccCcccc-CCCCCCCEEeccCCccc
Q psy10386         22 LHNLDSLVLAHNQLRTIPPRVF-AHLPLLNSLELDGNHIH   60 (166)
Q Consensus        22 l~~L~~L~ls~N~l~~i~~~~f-~~l~~L~~l~l~~N~l~   60 (166)
                      +++|+.|++++|.++......+ ..+++|+.|++++|+++
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            5677777777777654433322 45677777777777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.33  E-value=0.0057  Score=42.44  Aligned_cols=58  Identities=14%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             EEecCCCCceee----CCccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEec--cCCcccc
Q psy10386          2 IEIWGGQLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLEL--DGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l--~~N~l~~   61 (166)
                      |+|++|+|..-.    ..  .+...++|++|+|++|.|....    ..++...++|+.|++  ++|.+..
T Consensus        70 L~Ls~n~i~~~g~~~l~~--~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           70 FSIVGTRSNDPVAFALAE--MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             EECTTSCCCHHHHHHHHH--HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             EECcCCCCChHHHHHHHH--HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            788888886522    12  3445578899999999887532    334566678999999  7788754

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.58  E-value=0.0076  Score=48.74  Aligned_cols=41  Identities=17%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             CCccCceeeccCCcCCccCcc----ccCCCCCCCEEeccCCcccc
Q psy10386         21 GLHNLDSLVLAHNQLRTIPPR----VFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus        21 ~l~~L~~L~ls~N~l~~i~~~----~f~~l~~L~~l~l~~N~l~~   61 (166)
                      ++++|+.|++++|.++.+...    .+..+++|+.|++++|.+..
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            345555555555555433221    22344555555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=92.50  E-value=0.034  Score=38.48  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=26.6

Q ss_pred             ccCceeeccCCcCCccCccccCCCCCCCEEeccCCc
Q psy10386         23 HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNH   58 (166)
Q Consensus        23 ~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~   58 (166)
                      ..|+.||++++.++..--..+.++++|+.|+|+++.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            467888888887766555556777888888888774

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=92.38  E-value=0.026  Score=43.53  Aligned_cols=41  Identities=17%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             CCccCceeeccCCcCCccCcccc---CCCCCCCEEeccCCcccc
Q psy10386         21 GLHNLDSLVLAHNQLRTIPPRVF---AHLPLLNSLELDGNHIHT   61 (166)
Q Consensus        21 ~l~~L~~L~ls~N~l~~i~~~~f---~~l~~L~~l~l~~N~l~~   61 (166)
                      ..++|+.|++.+|.+..-....+   ..+++|+.|+++.|.+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            46889999999888764211111   246789999999998865

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=92.20  E-value=0.013  Score=47.23  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=27.1

Q ss_pred             EEecCCCCceeeCCccccC-CCccCceeeccCC-cCCcc-CccccCCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIFEKVATSG-GLHNLDSLVLAHN-QLRTI-PPRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~-~l~~L~~L~ls~N-~l~~i-~~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      |++++|.++.....  .+. .+++|+.|+++++ .++.. .+..+..+++|++|++++|.++.
T Consensus       110 L~L~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          110 IRLKRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             EEEESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             EEeeCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            45555555443322  232 3455666666555 33321 11222245566666666665443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=87.86  E-value=0.51  Score=32.51  Aligned_cols=55  Identities=15%  Similarity=0.089  Sum_probs=37.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCC-cCCccCccccCCC----CCCCEEeccCCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHN-QLRTIPPRVFAHL----PLLNSLELDGNH   58 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N-~l~~i~~~~f~~l----~~L~~l~l~~N~   58 (166)
                      ||++++.|+..--.  .+.++++|+.|+|++. +++.---..+..+    ++|++|+++++.
T Consensus        66 LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           66 IDATDSCIMSIGFD--HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             EEEESCCCCGGGGG--GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             EeCcCCCccHHHHH--HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            67888877655444  5678888888888887 4654333334443    368888888864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=85.28  E-value=0.21  Score=35.14  Aligned_cols=42  Identities=14%  Similarity=0.295  Sum_probs=24.1

Q ss_pred             cCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCccc
Q psy10386         19 SGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus        19 f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      +..-..|+.|+|++|++..--    ..++..-.+|+.|+|+.|.|.
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            334456677777777765321    122334556777777777764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=83.92  E-value=0.44  Score=33.47  Aligned_cols=57  Identities=12%  Similarity=0.035  Sum_probs=38.4

Q ss_pred             EEecCCCCceeeCC--ccccCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCc
Q psy10386          2 IEIWGGQLSSIFEK--VATSGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNH   58 (166)
Q Consensus         2 L~ls~N~l~~~~~~--~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~   58 (166)
                      |+|++|+|...-..  -..+..-..|+.|+|++|+|..--    ..++..-..|+.|+|++|.
T Consensus        75 L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A           75 FSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             EECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             EEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence            67888887643322  002334478999999999997532    2346667789999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (123), Expect = 3e-09
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 32  HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFS-------GLEDNPLVCTCDLMWY 84
           +N L  +P  +   L  L++L L  N ++T+    F         L  NP +C C+++++
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYF 216

Query: 85  KEW 87
           + W
Sbjct: 217 RRW 219

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 0.002
 Identities = 10/64 (15%), Positives = 16/64 (25%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLEDNPLVCTCDLMW 83
          +   L L+ N L T           L  L LD   +  +       +     +    L  
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 84 YKEW 87
              
Sbjct: 92 LPLL 95

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 5e-06
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 24 NLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL 70
          +   L L +N++  I    F +L  L++L L  N I  + P AF+ L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.3 bits (90), Expect = 8e-05
 Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 8/78 (10%)

Query: 1   MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFA------HLPLLNSLEL 54
            +       + + +          +  + L +N +  I    F            + + L
Sbjct: 220 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 55  DGNHIHT--VDPAAFSGL 70
             N +    + P+ F  +
Sbjct: 280 FSNPVQYWEIQPSTFRCV 297

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 1   MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH 60
           ++E+    L S   +     G+  L  + +A   + TIP  +    P L  L LDGN I 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKIT 184

Query: 61  TVDPAAFSGLEDNPLVCTCDLMWYKEW 87
            VD A+  GL +   +           
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVD 211

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 20 GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
            L NL +L+L +N++  I P  FA L  L  L L  N +  +  
Sbjct: 52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 96

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 31/101 (30%), Gaps = 32/101 (31%)

Query: 23  HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG------------- 69
            NL  L L  N++ ++P R F  L  L+ L L  N +  V P AF               
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

Query: 70  -------------------LEDNPLVCTCDLMWYKEWSTSL 91
                              L DNP VC C       W    
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 26/114 (22%), Positives = 37/114 (32%), Gaps = 6/114 (5%)

Query: 23  HNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG---LEDNPLVCTC 79
             L  L L  N L+ +P   F  L  L  L L GN I +V   AF G   L+   L    
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 80  DLMWYKEWSTSLGEKEDEQMSRKRT---VCTLGSSNVHQREIKLSDLPKQLVCE 130
               +      LG      +             +     + ++L+D P    C 
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 4e-05
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 18/110 (16%)

Query: 32  HNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG--------LEDNPLVCTCDLMW 83
            N+++ I  ++F  L  L +L L  N I  V P +F          L  NP  C C L W
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW 146

Query: 84  YKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLP-KQLVCEGE 132
           + EW           ++     C    +    R++++ DLP  +  C  E
Sbjct: 147 FAEWLRKK------SLNGGAARC---GAPSKVRDVQIKDLPHSEFKCSSE 187

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 2e-04
 Identities = 5/35 (14%), Positives = 13/35 (37%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLEL 54
            G      L ++  ++ ++P     +L  L +   
Sbjct: 198 HGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 20  GGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP 64
             L  L  L  A+N++  +     A+L  +N L    N I  + P
Sbjct: 326 SSLTKLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 13  FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGN 57
              V++   L N++ L   HNQ+  + P   A+L  +  L L+  
Sbjct: 341 VSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 10 SSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSG 69
          + + E+ A          L L   ++  I   + A L   ++++   N I  +D     G
Sbjct: 5  AELIEQAAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-----G 58

Query: 70 LEDNPLVCTCDLMWYKEWS 88
                + T  +   +   
Sbjct: 59 FPLLRRLKTLLVNNNRICR 77

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 22  LHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-----DNPLV 76
             +L+ L +++N+L  +P    A  P L  L    NH+  V P     L+      NPL 
Sbjct: 283 PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEV-PELPQNLKQLHVEYNPLR 337

Query: 77  CTCDLM 82
              D+ 
Sbjct: 338 EFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 34.4 bits (77), Expect = 0.004
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 2   IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT 61
           + +   +L  +            L+ L+ + N L  +P         L  L ++ N +  
Sbjct: 289 LNVSNNKLIEL------PALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLRE 338

Query: 62  VDPAAFSGLED 72
             P     +ED
Sbjct: 339 F-PDIPESVED 348

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.87
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.78
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.92
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.9
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.89
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.46
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.33
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.29
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.25
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.04
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.97
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.9
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.83
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.83
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	94.08
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.8
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	81.92

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.4e-22  Score=136.82  Aligned_cols=109  Identities=24%  Similarity=0.435  Sum_probs=96.3

Q ss_pred             EEecCC-CCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CC
Q psy10386          2 IEIWGG-QLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DN   73 (166)
Q Consensus         2 L~ls~N-~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~N   73 (166)
                      |++++| .|+.++++  +|.++++|+.|++++|+|+.+++++|.++++|+.|+|++|+|++++++.|+.++       +|
T Consensus        36 L~l~~n~~l~~i~~~--~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          36 LYIENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             EECCSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSS
T ss_pred             eecCCCccccccCch--hhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccccCCC
Confidence            678766 59999999  999999999999999999999999999999999999999999999999998777       99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCcc
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIK  119 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~  119 (166)
                      ||.|+|++.|+.+|++......    ..++..|..|..   ++|.+
T Consensus       114 p~~C~C~~~~l~~~~~~~~~~~----~~~~~~C~~p~~---l~~~p  152 (156)
T d2ifga3         114 PLHCSCALRWLQRWEEEGLGGV----PEQKLQCHGQGP---LAHMP  152 (156)
T ss_dssp             CCCCCGGGHHHHHHHHTTCSSC----GGGCCCCSSSSC---SSCCC
T ss_pred             cccCCchHHHHHHHHHhccCcc----CcCCcEECcChH---HCcCC
Confidence            9999999999999998643322    246799999988   66654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=6.9e-22  Score=139.37  Aligned_cols=122  Identities=30%  Similarity=0.599  Sum_probs=105.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|.++.++++  .|.++++|+.|++++|+|+.+++++|.++++|++|+|++|+|+++++++|..+.        +|
T Consensus        59 L~L~~N~i~~~~~~--~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          59 LELKRNQLTGIEPN--AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EECCSSCCCCBCTT--TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eecccccccccccc--ccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            67888888888888  888888899999999999999998999999999999999999999999888877        89


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC-cccCCCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK-QLVCEGEKG  134 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~-~~~C~~~~~  134 (166)
                      +|.|+|++.|+..|++....      ..+...|..|..   ++|..+.+++. ++.|..+..
T Consensus       137 ~~~~~~~~~~~~~~l~~~~l------~~~~~~c~~p~~---l~~~~l~~L~~n~l~C~~~~~  189 (192)
T d1w8aa_         137 PFNCNCHLAWFAEWLRKKSL------NGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENS  189 (192)
T ss_dssp             CBCCSGGGHHHHHHHHHHCC------SGGGCBBCSSTT---TTTSBGGGSCTTTCCCCCC--
T ss_pred             ccccccchHHHhhhhhhhcc------cCCCeEeCCChh---hcCCEeeecCHhhCcCCCCCC
Confidence            99999999999999987543      245689999998   99999999998 889976543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-19  Score=133.08  Aligned_cols=113  Identities=28%  Similarity=0.474  Sum_probs=91.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC--------CC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE--------DN   73 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~--------~N   73 (166)
                      |++++|+++.+++.  +|.++++|+.+++++|+++.+.+..|..+++|++|++++|.+.++++..|..+.        +|
T Consensus       158 L~l~~N~l~~l~~~--~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         158 LFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             EECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cccccCcccccchh--hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            67777777777777  777777777777777777777777777777788888888888777777776655        99


Q ss_pred             CccccCCcHHHHHHHHhccCCcchhcccCCceecCCCCCCcccCccccCCCC
Q psy10386         74 PLVCTCDLMWYKEWSTSLGEKEDEQMSRKRTVCTLGSSNVHQREIKLSDLPK  125 (166)
Q Consensus        74 p~~C~C~l~~l~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~~~~l~~~~~  125 (166)
                      ||.|+|++.|+..|++.....      .+++.|..|.+   ++|+.+.++..
T Consensus       236 ~l~C~C~~~~l~~~l~~~~~~------~~~~~C~~p~~---l~g~~l~~l~~  278 (284)
T d1ozna_         236 PWVCDCRARPLWAWLQKFRGS------SSEVPCSLPQR---LAGRDLKRLAA  278 (284)
T ss_dssp             CEECSGGGHHHHHHHHHCCSE------ECCCBEEESGG---GTTCBGGGSCG
T ss_pred             CCCCCccchHHHHHHHhCcCC------CCceEeCCchH---HcCCccccCCH
Confidence            999999999999999975432      46799999999   99999999886

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.9e-18  Score=124.44  Aligned_cols=90  Identities=24%  Similarity=0.499  Sum_probs=82.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC-------CCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE-------DNP   74 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~-------~Np   74 (166)
                      |++++|.++.+++.  .|.++++++.+++++|+++.++++.|..+++|++|++++|+|++++++.|....       +||
T Consensus       129 L~l~~n~l~~l~~~--~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         129 LYLKGNELKTLPPG--LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EECTTSCCCCCCTT--TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccceeccc--cccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            78899999999999  899999999999999999999999999999999999999999999988775433       999


Q ss_pred             ccccCCcHHHHHHHHhccC
Q psy10386         75 LVCTCDLMWYKEWSTSLGE   93 (166)
Q Consensus        75 ~~C~C~l~~l~~~~~~~~~   93 (166)
                      |.|||++.||..|++++..
T Consensus       207 ~~CdC~~~~l~~wl~~~~~  225 (266)
T d1p9ag_         207 WLCNCEILYFRRWLQDNAE  225 (266)
T ss_dssp             BCCSGGGHHHHHHHHHTGG
T ss_pred             CCCCcchHHHHHHHHhccc
Confidence            9999999999999987544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=1.2e-11  Score=86.10  Aligned_cols=69  Identities=28%  Similarity=0.370  Sum_probs=64.7

Q ss_pred             CEEecCCCCce-eeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          1 MIEIWGGQLSS-IFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         1 ~L~ls~N~l~~-~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      .|+|++|+|++ ++..  .|.++++|+.|++++|.++.++++.|..+++|+.|++++|+++.+++++|.+++
T Consensus        33 ~L~Ls~N~i~~~~~~~--~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~  102 (192)
T d1w8aa_          33 ELLLNDNELGRISSDG--LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH  102 (192)
T ss_dssp             EEECCSCCCCSBCCSC--SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT
T ss_pred             EEEeCCCCCccccccc--ccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCC
Confidence            38999999986 6677  899999999999999999999999999999999999999999999999999888

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=2.5e-10  Score=84.21  Aligned_cols=66  Identities=18%  Similarity=0.248  Sum_probs=59.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGL   70 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l   70 (166)
                      |++++|.++.+++.  .|.++++|+.|+|++|+|+.++. .|..+++|++|++++|+|++++...|...
T Consensus       200 L~~s~n~l~~~~~~--~~~~l~~L~~L~L~~N~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         200 LGLSFNSISAVDNG--SLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             EECCSSCCCEECTT--TGGGSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             cccccccccccccc--cccccccceeeeccccccccccc-ccccccCCCEEECCCCccCccChhhccCc
Confidence            78899999999998  89999999999999999999965 57889999999999999999998888653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=3.6e-10  Score=73.24  Aligned_cols=59  Identities=29%  Similarity=0.436  Sum_probs=44.8

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      +|++++|+++.++    .+.++++|++|++++|+++.+++. |..+++|+.|++++|+++.++.
T Consensus         2 ~L~Ls~n~l~~l~----~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~~   60 (124)
T d1dcea3           2 VLHLAHKDLTVLC----HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG   60 (124)
T ss_dssp             EEECTTSCCSSCC----CGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCGG
T ss_pred             EEEcCCCCCCCCc----ccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccCc
Confidence            4778888888774    356778888888888888887654 6677888888888888887753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=8.7e-10  Score=74.15  Aligned_cols=56  Identities=25%  Similarity=0.268  Sum_probs=52.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCccc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      |++++|+|+.++++  +|.++++|+.|+|++|+|+.++++.|..+ +|+.|++++|++.
T Consensus        61 L~Ls~N~l~~i~~~--~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          61 LTIVKSGLRFVAPD--AFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCCEECTT--GGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             ceeeccccCCcccc--cccccccccceeccCCCCcccChhhhccc-cccccccCCCccc
Confidence            79999999999999  99999999999999999999999999765 7999999999984

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.6e-10  Score=76.00  Aligned_cols=65  Identities=20%  Similarity=0.356  Sum_probs=55.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |+|++|+|+.++ +  .+..+++|+.|++++|+|+.++.  |..+++|+.|++++|+++.+++..+..++
T Consensus        23 L~L~~n~I~~i~-~--~~~~l~~L~~L~Ls~N~i~~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          23 LDLRGYKIPVIE-N--LGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             EECTTSCCCSCC-C--GGGGTTCCSEEECCSSCCCEECC--CCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             EECCCCCCCccC-c--cccccccCCEEECCCCCCCccCC--cccCcchhhhhcccccccCCCcccccccc
Confidence            789999999996 4  67888999999999999999854  78899999999999999999887655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.6e-09  Score=79.13  Aligned_cols=68  Identities=31%  Similarity=0.458  Sum_probs=59.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      +++++|+++.++++  .|..+++|+.|++++|+++.+++.+|.++++|+.+++++|++..+.+..|..++
T Consensus       134 l~l~~N~l~~i~~~--~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         134 LYLQDNALQALPDD--TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             EECCSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhccccccccChh--HhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhh
Confidence            67888899888888  888888899999999999998888888889999999999999888888888776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1e-09  Score=74.20  Aligned_cols=74  Identities=20%  Similarity=0.284  Sum_probs=62.2

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC--------
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE--------   71 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~--------   71 (166)
                      .|++++|+|+.++    .|.++++|++|++++|+++.++++.|..+++|+.|++++|+++.++. ..+..++        
T Consensus        45 ~L~Ls~N~i~~l~----~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~  120 (162)
T d1a9na_          45 AIDFSDNEIRKLD----GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL  120 (162)
T ss_dssp             EEECCSSCCCEEC----CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred             EEECCCCCCCccC----CcccCcchhhhhcccccccCCCccccccccccccceeccccccccccccccccccccchhhcC
Confidence            3899999999984    47899999999999999999999888889999999999999988765 3444443        


Q ss_pred             CCCcccc
Q psy10386         72 DNPLVCT   78 (166)
Q Consensus        72 ~Np~~C~   78 (166)
                      +||+...
T Consensus       121 ~N~i~~~  127 (162)
T d1a9na_         121 RNPVTNK  127 (162)
T ss_dssp             SSGGGGS
T ss_pred             CCccccc
Confidence            7887543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=1e-09  Score=71.07  Aligned_cols=73  Identities=21%  Similarity=0.271  Sum_probs=60.4

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC--------C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE--------D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~--------~   72 (166)
                      |++++|+|+.+++   .|.++++|+.|++++|+++.++.  +..+++|+++++++|+++.++. ..+..++        +
T Consensus        25 L~ls~N~l~~lp~---~~~~l~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          25 LDLSHNRLRALPP---ALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             EECCSSCCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             EECCCCccCcchh---hhhhhhcccccccccccccccCc--cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            8999999999976   58899999999999999999964  8899999999999999998864 3444333        7


Q ss_pred             CCccccC
Q psy10386         73 NPLVCTC   79 (166)
Q Consensus        73 Np~~C~C   79 (166)
                      |++....
T Consensus       100 N~i~~~~  106 (124)
T d1dcea3         100 NSLCQEE  106 (124)
T ss_dssp             SGGGGSS
T ss_pred             CcCCcCc
Confidence            7765443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.88  E-value=1.7e-09  Score=79.58  Aligned_cols=69  Identities=25%  Similarity=0.414  Sum_probs=63.9

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      +|++++|+|+.+++.  +|.++++|++|++++|.+..+++.+|..+++|+.+++++|+++.++...+..+.
T Consensus        35 ~L~Ls~N~i~~l~~~--~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~  103 (305)
T d1xkua_          35 LLDLQNNKITEIKDG--DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ  103 (305)
T ss_dssp             EEECCSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCC
T ss_pred             EEECcCCcCCCcChh--HhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhh
Confidence            389999999999998  899999999999999999999999999999999999999999999887776655

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.4e-09  Score=75.72  Aligned_cols=60  Identities=20%  Similarity=0.266  Sum_probs=50.9

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      +|+|++|+|+.+++.  +|.++++|++|+|++|+|+.++.  +..+++|+.|++++|+++.++.
T Consensus        35 ~L~Ls~N~i~~l~~~--~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~N~l~~~~~   94 (266)
T d1p9ag_          35 ILHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQSLPL   94 (266)
T ss_dssp             EEECTTSCCSEEEGG--GGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCSSCCC
T ss_pred             EEECcCCcCCCcCHH--Hhhcccccccccccccccccccc--cccccccccccccccccccccc
Confidence            378999999999988  89999999999999999998865  5678888889998888877654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.8e-08  Score=70.51  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=57.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+++.++..  .|.....++.+++++|+++.++++.|.++++|++|++++|+++.+++..|+.+.
T Consensus       158 L~l~~n~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         158 LWLNKNGIQEIHNC--AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             EECCSSCCCEECTT--TTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             eecccccccccccc--cccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            67888999999988  777655555667888899999999999999999999999999999988887654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9.9e-08  Score=67.53  Aligned_cols=68  Identities=24%  Similarity=0.477  Sum_probs=51.7

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCc-cCccccCCCCCCCEEecc-CCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRT-IPPRVFAHLPLLNSLELD-GNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~-i~~~~f~~l~~L~~l~l~-~N~l~~~~~~~~~~l~   71 (166)
                      |++++|+|+.+++.  +|.++++|++|++++|.+.. +++.+|.++++++.+++. .|.+..+++..|..++
T Consensus        34 L~Ls~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~  103 (242)
T d1xwdc1          34 LRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  103 (242)
T ss_dssp             EEEESCCCCEECTT--TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCT
T ss_pred             EECcCCcCCccChh--Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccc
Confidence            77888888888887  78888888888888887654 667777777777777764 4677777777776655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.33  E-value=2e-07  Score=68.49  Aligned_cols=59  Identities=24%  Similarity=0.302  Sum_probs=45.1

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccc-cC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHT-VD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~-~~   63 (166)
                      +++++|.++..++   .+..+++|+.|++++|+++...|..|..+++|++|++++|+|++ +|
T Consensus       226 l~~~~~~l~~~~~---~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         226 IHLAKNSLAFDLG---KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             EECCSSEECCBGG---GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             ccccccccccccc---ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence            5677777776555   46778888889999998885545557888889999999998874 44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.31  E-value=4.2e-07  Score=63.81  Aligned_cols=57  Identities=32%  Similarity=0.489  Sum_probs=44.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++...    .|.++++|+.|++++|+++.+++  |..+++|++|++++|+++.+++
T Consensus       156 L~l~~n~~~~~~----~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~  212 (227)
T d1h6ua2         156 LSIGNAQVSDLT----PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (227)
T ss_dssp             EECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             ccccccccccch----hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc
Confidence            567777776543    46788888888888888888755  7788888888998888888764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.29  E-value=3.9e-07  Score=68.10  Aligned_cols=57  Identities=25%  Similarity=0.412  Sum_probs=41.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|++++++    .+..+++|+.|++++|+++.++  .|.++++|++|++++|+++.+++
T Consensus       312 L~ls~n~l~~l~----~l~~l~~L~~L~L~~n~l~~l~--~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         312 LTLYFNNISDIS----PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             EECCSSCCSCCG----GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             EECCCCCCCCCc----ccccCCCCCEEECCCCCCCCCh--hHcCCCCCCEEECCCCcCCCChh
Confidence            567777777764    3556777888888888777765  36677788888888887777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.26  E-value=2.4e-07  Score=68.03  Aligned_cols=68  Identities=21%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             EEecCCCCcee--eCCccccCCCccCceeeccC-CcCCccCccccCCCCCCCEEeccCCcccccCccccCCCC
Q psy10386          2 IEIWGGQLSSI--FEKVATSGGLHNLDSLVLAH-NQLRTIPPRVFAHLPLLNSLELDGNHIHTVDPAAFSGLE   71 (166)
Q Consensus         2 L~ls~N~l~~~--~~~~~~f~~l~~L~~L~ls~-N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~~~~~~l~   71 (166)
                      |+|++|.+++.  .|.  .+..+++|++|+|++ |++++.-|..|..+++|++|++++|++.++.+..+..+.
T Consensus        55 L~L~~~~l~g~~~lp~--~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             EEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EECCCCCCCCCCCCCh--HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh
Confidence            78888888753  234  688899999999986 778744344578889999999999998888777666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=7.5e-08  Score=64.73  Aligned_cols=61  Identities=30%  Similarity=0.369  Sum_probs=44.6

Q ss_pred             ccCCCccCceeeccCCcCCccCc--cccCCCCCCCEEeccCCcccccCccccC-CC--C-----CCCcccc
Q psy10386         18 TSGGLHNLDSLVLAHNQLRTIPP--RVFAHLPLLNSLELDGNHIHTVDPAAFS-GL--E-----DNPLVCT   78 (166)
Q Consensus        18 ~f~~l~~L~~L~ls~N~l~~i~~--~~f~~l~~L~~l~l~~N~l~~~~~~~~~-~l--~-----~Np~~C~   78 (166)
                      .+.++++|+.|+|++|+|+.+++  ..+..+++|+.|++++|.++.+++-.+. ..  .     +||+.+.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            44567889999999999988864  4466788999999999998887763221 11  1     8888654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.15  E-value=1.4e-06  Score=59.94  Aligned_cols=56  Identities=27%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|++..++    .+.++++|+.|++++|+++.+++  |+++++|+.|++++|+++.++
T Consensus       133 L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         133 LELSSNTISDIS----ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             EECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred             hhhhhhhhcccc----cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc
Confidence            445555554432    24455555555555555555533  455555555555555555543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=2.1e-06  Score=64.02  Aligned_cols=57  Identities=26%  Similarity=0.360  Sum_probs=47.2

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |+++++.|+.+.    -+..+++|++|++++|+|+.+++  ++.+++|++|++++|++..+++
T Consensus        49 L~l~~~~I~~l~----gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~  105 (384)
T d2omza2          49 LQADRLGIKSID----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP  105 (384)
T ss_dssp             EECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             EECCCCCCCCcc----ccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc
Confidence            678888888773    35678899999999999998875  8888999999999999887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.04  E-value=3.9e-06  Score=57.64  Aligned_cols=57  Identities=26%  Similarity=0.360  Sum_probs=47.3

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++.+.    .+..+++|++|++++|+++.+++  +.++++|+.|++++|.+..+++
T Consensus        45 L~l~~~~i~~l~----~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~  101 (199)
T d2omxa2          45 LQADRLGIKSID----GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP  101 (199)
T ss_dssp             EECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             EECCCCCCCCcc----ccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc
Confidence            678888888774    35678899999999999988876  7888999999999998887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.99  E-value=3.8e-06  Score=58.22  Aligned_cols=57  Identities=30%  Similarity=0.338  Sum_probs=44.8

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|.++.+.+    +..+++|++|++++|+++.+++  +..+++|+.|++++|+++.++.
T Consensus        51 L~l~~~~i~~l~~----l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~~  107 (210)
T d1h6ta2          51 IIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS  107 (210)
T ss_dssp             EECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG
T ss_pred             EECcCCCCCCchh----HhhCCCCCEEeCCCccccCccc--cccCcccccccccccccccccc
Confidence            6778888877653    4578888888888888888765  5678888888888888887763

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.97  E-value=5.1e-06  Score=60.90  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=23.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|+|+.++..      +++|+.|++++|+|+.++.    .+.+|+.|++++|+++.++
T Consensus       289 L~Ls~N~l~~lp~~------~~~L~~L~L~~N~L~~l~~----~~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         289 LNVSNNKLIELPAL------PPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             EECCSSCCSCCCCC------CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC
T ss_pred             EECCCCccCccccc------cCCCCEEECCCCcCCcccc----ccCCCCEEECcCCcCCCCC
Confidence            44445544444321      2344445555555544432    1234555555555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.90  E-value=8e-06  Score=56.53  Aligned_cols=57  Identities=28%  Similarity=0.423  Sum_probs=49.9

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+|+.+++    +..+++|+.|++++|+++.++.  +..+++|+.+++++|.+..++.
T Consensus        73 L~L~~n~i~~l~~----~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~~~~~~~~~  129 (210)
T d1h6ta2          73 LFLNGNKLTDIKP----LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING  129 (210)
T ss_dssp             EECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEECTTSCCCCCGG
T ss_pred             EeCCCccccCccc----cccCcccccccccccccccccc--cccccccccccccccccccccc
Confidence            7899999998774    5689999999999999999864  7889999999999999877653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=8.9e-07  Score=59.25  Aligned_cols=63  Identities=21%  Similarity=0.138  Sum_probs=50.5

Q ss_pred             CEEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          1 MIEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         1 ~L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      .|++++|+|+.+.+-...+..+++|+.|++++|+++.+++-.+-...+|+.+++++|++....
T Consensus        69 ~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          69 SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             CCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             EeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            478999999988642015778999999999999999998755555668999999999997654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.83  E-value=3.9e-07  Score=63.09  Aligned_cols=71  Identities=20%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc-cccCCCC--------C
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP-AAFSGLE--------D   72 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~-~~~~~l~--------~   72 (166)
                      |++++|+|+.+++   .+..+++|+.|++++|+++.+++  +..+++|+.|++++|+++.++. ..+..++        +
T Consensus        75 L~Ls~N~i~~i~~---~~~~~~~L~~L~l~~N~i~~l~~--~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~  149 (198)
T d1m9la_          75 LSLGRNLIKKIEN---LDAVADTLEELWISYNQIASLSG--IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             EECCEEEECSCSS---HHHHHHHCCEEECSEEECCCHHH--HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             hhhcccccccccc---ccccccccccccccccccccccc--ccccccccccccccchhccccccccccCCCccceeecCC
Confidence            7888888887764   35556778888888888888743  5677888888888888877654 3445444        7


Q ss_pred             CCccc
Q psy10386         73 NPLVC   77 (166)
Q Consensus        73 Np~~C   77 (166)
                      ||...
T Consensus       150 N~l~~  154 (198)
T d1m9la_         150 NPLYN  154 (198)
T ss_dssp             SHHHH
T ss_pred             Ccccc
Confidence            77654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.83  E-value=5.4e-08  Score=67.57  Aligned_cols=58  Identities=22%  Similarity=0.263  Sum_probs=47.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVDP   64 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~~   64 (166)
                      |++++|+|+.++    .|.++++|+.|++++|+++.++.. +...++|+.|++++|+++.+++
T Consensus        53 L~Ls~n~I~~i~----~l~~l~~L~~L~Ls~N~i~~i~~~-~~~~~~L~~L~l~~N~i~~l~~  110 (198)
T d1m9la_          53 LALSTNNIEKIS----SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQIASLSG  110 (198)
T ss_dssp             EECSEEEESCCC----CHHHHTTCCEEECCEEEECSCSSH-HHHHHHCCEEECSEEECCCHHH
T ss_pred             eECcccCCCCcc----cccCCccccChhhccccccccccc-cccccccccccccccccccccc
Confidence            789999998874    477899999999999999988643 3345689999999999988753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.63  E-value=3.3e-05  Score=56.40  Aligned_cols=33  Identities=36%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCc
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPP   40 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~   40 (166)
                      |++++|.++.+|+.      .++|++|++++|+|+.+|.
T Consensus        43 LdLs~~~L~~lp~~------~~~L~~L~Ls~N~l~~lp~   75 (353)
T d1jl5a_          43 LELNNLGLSSLPEL------PPHLESLVASCNSLTELPE   75 (353)
T ss_dssp             EECTTSCCSCCCSC------CTTCSEEECCSSCCSSCCC
T ss_pred             EEeCCCCCCCCCCC------CCCCCEEECCCCCCccccc
Confidence            67777777776642      3567777777777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.60  E-value=4.3e-05  Score=53.14  Aligned_cols=56  Identities=30%  Similarity=0.484  Sum_probs=46.5

Q ss_pred             EEecCCCCceeeCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccCCcccccC
Q psy10386          2 IEIWGGQLSSIFEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDGNHIHTVD   63 (166)
Q Consensus         2 L~ls~N~l~~~~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~N~l~~~~   63 (166)
                      |++++|.|+.+.    .+..+++|+.|++++|+++.+.+  |..+++++.+++++|.++.++
T Consensus        46 L~l~~~~i~~l~----~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          46 LSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             EECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG
T ss_pred             EECCCCCCCcch----hHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc
Confidence            678888888873    36788999999999999988765  778889999999999887765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.00063  Score=50.89  Aligned_cols=58  Identities=14%  Similarity=0.058  Sum_probs=31.4

Q ss_pred             EEecCCCCceee----CCccccCCCccCceeeccCCcCCccC----ccccC-CCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIP----PRVFA-HLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~----~~~f~-~l~~L~~l~l~~N~l~~   61 (166)
                      |+|++|.++...    ..  .+...++|++|||++|.|+...    ...+. ...+|+.|++++|+++.
T Consensus        32 L~L~~~~i~~~~~~~l~~--~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          32 VRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             EEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             EEeCCCCCCHHHHHHHHH--HHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            556666665221    12  3455667777777777664321    11122 22467777777777654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.004  Score=46.31  Aligned_cols=58  Identities=17%  Similarity=0.216  Sum_probs=43.1

Q ss_pred             EEecCCCCceee----CCccccC-CCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIF----EKVATSG-GLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~----~~~~~f~-~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      |+|++|+|+...    ..  .+. ...+|+.|++++|+++...    ..++...++|++|++++|.++.
T Consensus        60 LdLs~N~i~~~~~~~l~~--~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          60 LNLRSNELGDVGVHCVLQ--GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             EECTTCCCHHHHHHHHHH--TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             EECcCCcCChHHHHHHHH--HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            799999986321    11  222 3358999999999998653    3457788999999999999864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.017  Score=40.89  Aligned_cols=41  Identities=27%  Similarity=0.199  Sum_probs=29.7

Q ss_pred             CCCccCceeeccCC-cCCccCccccCCCCCCCEEeccCC-ccc
Q psy10386         20 GGLHNLDSLVLAHN-QLRTIPPRVFAHLPLLNSLELDGN-HIH   60 (166)
Q Consensus        20 ~~l~~L~~L~ls~N-~l~~i~~~~f~~l~~L~~l~l~~N-~l~   60 (166)
                      .++++|++|+++++ .++.-....+..+++|++|+++++ .++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            45688889999875 566555555667888999999884 454

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.0042  Score=44.29  Aligned_cols=53  Identities=17%  Similarity=0.161  Sum_probs=30.9

Q ss_pred             EEecCCCCcee-eCCccccCCCccCceeeccCCcCCccCccccCCCCCCCEEeccC
Q psy10386          2 IEIWGGQLSSI-FEKVATSGGLHNLDSLVLAHNQLRTIPPRVFAHLPLLNSLELDG   56 (166)
Q Consensus         2 L~ls~N~l~~~-~~~~~~f~~l~~L~~L~ls~N~l~~i~~~~f~~l~~L~~l~l~~   56 (166)
                      |+++++.++.- ...  .+.++++|++|+++++.++......+...++|+.|++++
T Consensus        51 LdLs~~~i~~~~l~~--l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          51 MDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             EECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             EECCCCccCHHHHHH--HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            45666555432 122  355666777777777666554444555666677777766

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.08  E-value=0.0083  Score=43.55  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=21.7

Q ss_pred             cCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCccc
Q psy10386         19 SGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus        19 f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      +...++|+.|++++|.++...    ...+...++|++|++++|.++
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence            444555666666666554321    122344555666666666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.61  E-value=0.0096  Score=43.20  Aligned_cols=58  Identities=19%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             EEecCCCCceee----CCccccCCCccCceeeccCCcCCccCccc----cC--CCCCCCEEeccCCcccc
Q psy10386          2 IEIWGGQLSSIF----EKVATSGGLHNLDSLVLAHNQLRTIPPRV----FA--HLPLLNSLELDGNHIHT   61 (166)
Q Consensus         2 L~ls~N~l~~~~----~~~~~f~~l~~L~~L~ls~N~l~~i~~~~----f~--~l~~L~~l~l~~N~l~~   61 (166)
                      |++++|.++...    ..  .+...++|+.|++++|.|+......    +.  ...+|+.|++++|.+..
T Consensus       220 L~Ls~N~i~~~g~~~L~~--~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         220 LDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             EECCSSCCHHHHHHHHHH--HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cccccccccccccccccc--cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            788889886431    12  4667889999999999987643222    22  23679999999998754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.80  E-value=0.028  Score=36.60  Aligned_cols=43  Identities=14%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             cCCCccCceeeccCCcCCccC----ccccCCCCCCCEEeccCCcccc
Q psy10386         19 SGGLHNLDSLVLAHNQLRTIP----PRVFAHLPLLNSLELDGNHIHT   61 (166)
Q Consensus        19 f~~l~~L~~L~ls~N~l~~i~----~~~f~~l~~L~~l~l~~N~l~~   61 (166)
                      +...+.|+.|++++|.+..-.    ...+...++|+.|++++|.++.
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~   86 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP   86 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcch
Confidence            455567888888888776321    1234445678888888887754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=81.92  E-value=0.26  Score=31.70  Aligned_cols=39  Identities=8%  Similarity=0.084  Sum_probs=22.5

Q ss_pred             CccCceeeccCC-cCCccC----ccccCCCCCCCEEeccCCccc
Q psy10386         22 LHNLDSLVLAHN-QLRTIP----PRVFAHLPLLNSLELDGNHIH   60 (166)
Q Consensus        22 l~~L~~L~ls~N-~l~~i~----~~~f~~l~~L~~l~l~~N~l~   60 (166)
                      .++|+.|+|+++ .++.-.    ..++...++|+.|++++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            466777777653 343211    123445566777777777664