Psyllid ID: psy10392

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPDK
cEEEEcHHHHHHHHHHHHHccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHccccccHHHcccEEEcccccccccHHHHHHHHHHHHHHHHcccHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEcccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccHHHHHHccccccEEEEccccccEEEEHHHHHHHHHHHHHcccccc
cEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHccccccccccEEEEEcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHcHHHHHHcHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccEEEEEEEcHHHcccccHccccccccHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccc
MLAIEGIPIFYLELAIGQRLRKgaigvwnhvspYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSfraqlpwaecptrvfpngsslvepeclastpteyFWYRttldispsidepngfnWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRgitlpgmshglshlftpkwymlkephvwleAGTQIFFSLGLAFGGliayssynpvdnncyrdaFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMlkephvwleAGTQIFFSLGLAFGGliayssynpvdnncyrdaFIVSFTNCCTSTFAAIVIFAIIERTGliayssynpvdnncyrdaFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAmlaldphdsknvpecslekelenrfdsqtyltFDISLAREIAFSKGIFRLVSFLFKVLQPDK
MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMlaldphdskNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPDK
MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMfaaivifaiigfkaTNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPDK
**AIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALD****************ENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVL****
MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPD*
MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPDK
MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPDK
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIETASLRLGEVHWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFKATNVYERCLQTRNAMLALDPHDSKNVPECSLEKELENRFDSQTYLTFDISLAREIAFSKGIFRLVSFLFKVLQPDK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query453 2.2.26 [Sep-21-2011]
Q8BG16 729 Sodium-dependent neutral yes N/A 0.540 0.336 0.548 2e-77
Q9XS59 729 Sodium-dependent neutral yes N/A 0.540 0.336 0.548 7e-77
Q8BJI1 727 Sodium-dependent neutral no N/A 0.551 0.343 0.533 3e-75
P31662 727 Sodium-dependent neutral yes N/A 0.551 0.343 0.533 5e-75
Q9H1V8 727 Sodium-dependent neutral yes N/A 0.551 0.343 0.529 1e-74
Q5R9C2 730 Sodium-dependent neutral no N/A 0.551 0.342 0.541 4e-73
Q9H2J7 730 Sodium-dependent neutral no N/A 0.551 0.342 0.541 1e-72
O88576 615 Sodium-dependent neutral no N/A 0.547 0.403 0.517 1e-72
Q08469 729 Sodium-dependent neutral no N/A 0.540 0.336 0.548 5e-72
Q96N87 628 Sodium-dependent neutral no N/A 0.547 0.394 0.490 5e-72
>sp|Q8BG16|S6A15_MOUSE Sodium-dependent neutral amino acid transporter B(0)AT2 OS=Mus musculus GN=Slc6a15 PE=1 SV=1 Back     alignment and function desciption
 Score =  290 bits (742), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 136/248 (54%), Positives = 183/248 (73%), Gaps = 3/248 (1%)

Query: 6   GIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFA 65
           GIP+F+LEL++GQR+R+G+IGVWN++SP L GIG AS VV + VALYYN +I W LFYF+
Sbjct: 111 GIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCVVCYFVALYYNVIIGWTLFYFS 170

Query: 66  QSFRAQLPWAECPTRVFPNGS-SLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQI 124
           QSF+  LPW +CP  +  N S + VEPEC  S+ T Y+WYR  LDI+ SI +  G NW++
Sbjct: 171 QSFQQPLPWDQCP--LVKNASHTYVEPECEQSSATTYYWYREALDITSSISDSGGLNWKM 228

Query: 125 AFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSHLFTP 184
              L++AW +V L M+KGI SS  ++Y +S+FPY+VLI F +R + L G   G+ H+FTP
Sbjct: 229 TVCLLVAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLIRSLLLNGSIDGIRHMFTP 288

Query: 185 KWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSMFA 244
           K  M+ EP VW EA TQ+FF+LGL FGG+IA+SSYN  DNNC+ DA +VSF N  TS+ A
Sbjct: 289 KLEMMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSFINFFTSVLA 348

Query: 245 AIVIFAII 252
            +V+FA++
Sbjct: 349 TLVVFAVL 356
Functions as a sodium-dependent neutral amino acid transporter. Exhibits preference for methionine and for the branched-chain amino acids, particularly leucine, valine and isoleucine. Mediates the saturable, pH-sensitive and electrogenic cotransport of proline and sodium ions with a stoichiometry of 1:1. May have a role as transporter for neurotransmitter precursors into neurons. In contrast to other members of the neurotransmitter transporter family, does not appear to be chloride-dependent.
Mus musculus (taxid: 10090)
>sp|Q9XS59|S6A15_BOVIN Sodium-dependent neutral amino acid transporter B(0)AT2 OS=Bos taurus GN=SLC6A15 PE=2 SV=1 Back     alignment and function description
>sp|Q8BJI1|S6A17_MOUSE Sodium-dependent neutral amino acid transporter SLC6A17 OS=Mus musculus GN=Slc6a17 PE=1 SV=1 Back     alignment and function description
>sp|P31662|S6A17_RAT Sodium-dependent neutral amino acid transporter SLC6A17 OS=Rattus norvegicus GN=Slc6a17 PE=1 SV=1 Back     alignment and function description
>sp|Q9H1V8|S6A17_HUMAN Sodium-dependent neutral amino acid transporter SLC6A17 OS=Homo sapiens GN=SLC6A17 PE=2 SV=3 Back     alignment and function description
>sp|Q5R9C2|S6A15_PONAB Sodium-dependent neutral amino acid transporter B(0)AT2 OS=Pongo abelii GN=SLC6A15 PE=2 SV=2 Back     alignment and function description
>sp|Q9H2J7|S6A15_HUMAN Sodium-dependent neutral amino acid transporter B(0)AT2 OS=Homo sapiens GN=SLC6A15 PE=1 SV=1 Back     alignment and function description
>sp|O88576|S6A18_MOUSE Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Mus musculus GN=Slc6a18 PE=2 SV=1 Back     alignment and function description
>sp|Q08469|S6A15_RAT Sodium-dependent neutral amino acid transporter B(0)AT2 OS=Rattus norvegicus GN=Slc6a15 PE=2 SV=1 Back     alignment and function description
>sp|Q96N87|S6A18_HUMAN Sodium-dependent neutral amino acid transporter B(0)AT3 OS=Homo sapiens GN=SLC6A18 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
345496216423 PREDICTED: sodium-dependent neutral amin 0.556 0.595 0.769 1e-114
307177670 725 Orphan sodium- and chloride-dependent ne 0.397 0.248 0.773 1e-113
322800442 788 hypothetical protein SINV_09938 [Solenop 0.565 0.324 0.75 1e-113
307213387 726 Orphan sodium- and chloride-dependent ne 0.395 0.246 0.769 1e-112
332027558 724 Orphan sodium- and chloride-dependent ne 0.395 0.247 0.773 1e-112
350421847 730 PREDICTED: sodium-dependent neutral amin 0.395 0.245 0.765 1e-111
340716784 730 PREDICTED: sodium-dependent neutral amin 0.395 0.245 0.765 1e-111
91078496 693 PREDICTED: similar to sodium- and chlori 0.452 0.295 0.761 1e-111
383852995 729 PREDICTED: sodium-dependent neutral amin 0.395 0.245 0.769 1e-111
270003852 723 hypothetical protein TcasGA2_TC003133 [T 0.395 0.247 0.761 1e-111
>gi|345496216|ref|XP_001603851.2| PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT3-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/252 (76%), Positives = 222/252 (88%)

Query: 1   MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
           MLAIEGIPIFYLELAIGQRLRKGAIGVWN VSPY+ GIG++SAVVSFNVALYYNT+IAWC
Sbjct: 165 MLAIEGIPIFYLELAIGQRLRKGAIGVWNQVSPYMAGIGVSSAVVSFNVALYYNTIIAWC 224

Query: 61  LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
           LFYF QSF+++LPW+ECP + F NGS   EPECL S+PT+YFWYRTTL IS  I+ P+ F
Sbjct: 225 LFYFVQSFQSELPWSECPNKYFQNGSYSPEPECLQSSPTQYFWYRTTLMISKDINTPDVF 284

Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
           NW+IA ALV+AW +VY+CM+KGIASS  VVYVT+ FPY+VLI+FF RG+TLPGMS GL H
Sbjct: 285 NWKIALALVIAWILVYMCMIKGIASSGKVVYVTATFPYIVLIIFFFRGVTLPGMSDGLRH 344

Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
           LFTPKWY L +P VWLEAGTQIFFSLGLAFGGLIA+SSYNPV+NNCYRDA +VS TNC T
Sbjct: 345 LFTPKWYTLTDPVVWLEAGTQIFFSLGLAFGGLIAFSSYNPVNNNCYRDAIMVSLTNCFT 404

Query: 241 SMFAAIVIFAII 252
           SMFA IV+F+II
Sbjct: 405 SMFAGIVVFSII 416

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307177670|gb|EFN66716.1| Orphan sodium- and chloride-dependent neurotransmitter transporter NTT73 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322800442|gb|EFZ21446.1| hypothetical protein SINV_09938 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307213387|gb|EFN88823.1| Orphan sodium- and chloride-dependent neurotransmitter transporter NTT73 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332027558|gb|EGI67632.1| Orphan sodium- and chloride-dependent neurotransmitter transporter NTT73 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350421847|ref|XP_003492976.1| PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340716784|ref|XP_003396873.1| PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|91078496|ref|XP_969026.1| PREDICTED: similar to sodium- and chloride-dependent neurotransmitter transporter [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383852995|ref|XP_003702010.1| PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|270003852|gb|EFA00300.1| hypothetical protein TcasGA2_TC003133 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query453
FB|FBgn0029663 726 CG10804 [Drosophila melanogast 0.556 0.347 0.670 7.6e-96
FB|FBgn0262476 675 CG43066 [Drosophila melanogast 0.547 0.367 0.559 1.1e-78
ZFIN|ZDB-GENE-080219-9 618 slc6a18 "solute carrier family 0.547 0.401 0.549 3.9e-76
UNIPROTKB|E2R9L9 730 SLC6A15 "Transporter" [Canis l 0.551 0.342 0.561 6.3e-76
ZFIN|ZDB-GENE-050420-93 741 slc6a15 "solute carrier family 0.554 0.338 0.555 8.1e-76
MGI|MGI:2143484 729 Slc6a15 "solute carrier family 0.551 0.342 0.541 7.3e-75
UNIPROTKB|Q5R9C2 730 SLC6A15 "Sodium-dependent neut 0.551 0.342 0.541 9.3e-75
UNIPROTKB|Q9H2J7 730 SLC6A15 "Sodium-dependent neut 0.551 0.342 0.541 1.5e-74
UNIPROTKB|Q9XS59 729 SLC6A15 "Sodium-dependent neut 0.551 0.342 0.541 2.5e-74
RGD|628664 729 Slc6a15 "solute carrier family 0.551 0.342 0.541 4e-74
FB|FBgn0029663 CG10804 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 169/252 (67%), Positives = 212/252 (84%)

Query:     1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
             ML I+GIPIFYLELAIGQRLRKGAIGVW+ VSPYL GIGI+SAVVS+ VALYYNT+IAWC
Sbjct:   163 MLCIQGIPIFYLELAIGQRLRKGAIGVWSQVSPYLGGIGISSAVVSYIVALYYNTIIAWC 222

Query:    61 LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
             L Y   SF + LPWA+CPTR++ N +   EPEC+AS+PT+++WYRTTL  S S+D P  F
Sbjct:   223 LIYLLHSFESPLPWADCPTRLYKNFTYDHEPECVASSPTQFYWYRTTLQCSESVDMPENF 282

Query:   121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
             N+ +A AL+++W +VY+CM++GI SS  +VY+T++FPY+VLI+FF RGITL G + G++H
Sbjct:   283 NYHMAIALIVSWFLVYICMVQGITSSGKIVYMTAIFPYVVLIIFFFRGITLKGAADGVAH 342

Query:   181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
             LFTP+W  L +P VWLEAGTQIFFSLGLAFGGLIA+SSYNP +NNCYRDA +VS TNC T
Sbjct:   343 LFTPRWETLLDPVVWLEAGTQIFFSLGLAFGGLIAFSSYNPANNNCYRDAILVSLTNCGT 402

Query:   241 SMFAAIVIFAII 252
             SMFA +V+F++I
Sbjct:   403 SMFAGVVVFSVI 414
GO:0005328 "neurotransmitter:sodium symporter activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0006836 "neurotransmitter transport" evidence=ISS
GO:0005326 "neurotransmitter transporter activity" evidence=ISS
FB|FBgn0262476 CG43066 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080219-9 slc6a18 "solute carrier family 6, member 18" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9L9 SLC6A15 "Transporter" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050420-93 slc6a15 "solute carrier family 6 (neutral amino acid transporter), member 15" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2143484 Slc6a15 "solute carrier family 6 (neurotransmitter transporter), member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R9C2 SLC6A15 "Sodium-dependent neutral amino acid transporter B(0)AT2" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H2J7 SLC6A15 "Sodium-dependent neutral amino acid transporter B(0)AT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q9XS59 SLC6A15 "Sodium-dependent neutral amino acid transporter B(0)AT2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|628664 Slc6a15 "solute carrier family 6 (neutral amino acid transporter), member 15" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BG16S6A15_MOUSENo assigned EC number0.54830.54080.3360yesN/A
Q9H1V8S6A17_HUMANNo assigned EC number0.52960.55180.3438yesN/A
Q9XS59S6A15_BOVINNo assigned EC number0.54830.54080.3360yesN/A
P31662S6A17_RATNo assigned EC number0.53350.55180.3438yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
cd10332565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 1e-148
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 1e-105
cd11517576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 1e-100
cd11518576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 8e-96
cd11522580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 1e-95
cd11521589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 1e-94
cd11515530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 3e-94
cd11516581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 2e-89
cd11496543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 8e-83
cd11497539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 5e-79
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 2e-78
cd11500544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 2e-76
cd11513537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 6e-74
cd11556552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 8e-69
cd11509592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 3e-66
cd11502543 cd11502, SLC6sbd_NTT5, Neurotransmitter transporte 2e-65
cd11506598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 1e-63
cd11499606 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent 5e-63
cd11501601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 3e-62
cd11510542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 5e-61
cd11507544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 1e-60
cd11498585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 3e-59
cd11511541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 8e-58
cd11508542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 2e-57
cd11512560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 3e-57
cd11514555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 1e-55
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 1e-45
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 3e-33
cd10332 565 cd10332, SLC6sbd-B0AT-like, System B(0) neutral am 2e-32
cd10324417 cd10324, SLC6sbd, Solute carrier 6 family, neurotr 4e-27
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 1e-26
pfam00209506 pfam00209, SNF, Sodium:neurotransmitter symporter 6e-26
cd11497 539 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen 2e-22
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 3e-22
cd11517 576 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3 3e-20
cd11496 543 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen 3e-20
cd11500 544 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent 1e-18
cd11501 601 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent 1e-18
cd11556 552 cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub 3e-18
cd11522 580 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch 6e-18
cd11512 560 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n 8e-18
cd11521 589 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm 1e-17
cd11516 581 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am 1e-17
cd11515 530 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot 2e-17
cd11506 598 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent 5e-17
cd11518 576 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent 6e-17
cd11498 585 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent 1e-16
cd11509 592 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c 3e-16
cd10334480 cd10334, SLC6sbd_u1, uncharacterized bacterial and 7e-16
cd11513 537 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent 3e-15
cd11514 555 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent 3e-15
cd11507 544 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent 3e-13
cd11508 542 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent 1e-12
cd11511 541 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent 5e-12
cd11554406 cd11554, SLC6sbd_u2, uncharacterized eukaryotic so 5e-12
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 5e-12
cd11510 542 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent 2e-11
COG0733439 COG0733, COG0733, Na+-dependent transporters of th 4e-09
cd10336439 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa 3e-06
cd10333500 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and 1e-04
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information 
 Score =  433 bits (1116), Expect = e-148
 Identities = 162/252 (64%), Positives = 194/252 (76%), Gaps = 3/252 (1%)

Query: 1   MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWC 60
           ML +EGIP+F+LELAIGQRLRKG+IGVWN +SPYL GIGIAS VVSF VALYYN +IAWC
Sbjct: 46  MLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYYNVIIAWC 105

Query: 61  LFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGF 120
            FY   SF+  LPW+ CPT     G      EC  S+PT+YFWYRTTLDISPSIDE  G 
Sbjct: 106 FFYLFNSFQYPLPWSSCPTNGNGTG---YVEECAKSSPTQYFWYRTTLDISPSIDESGGL 162

Query: 121 NWQIAFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPGMSHGLSH 180
           NW +   L+LAW +VYLCM+KGI SS  VVY T+ FPY+VLI+F +RG+TL G   GL H
Sbjct: 163 NWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFLIRGLTLKGAGDGLKH 222

Query: 181 LFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCT 240
           +FTPK+  L +P VWL+A TQIFFSLGL FG LIA+SSYNP  NNC+RDA +VS  NC T
Sbjct: 223 MFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKNNCHRDAVLVSLINCFT 282

Query: 241 SMFAAIVIFAII 252
           S+FA+IV+F+++
Sbjct: 283 SIFASIVVFSVL 294

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family Back     alignment and domain information
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain Back     alignment and domain information
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain Back     alignment and domain information
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain Back     alignment and domain information
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain Back     alignment and domain information
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain Back     alignment and domain information
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain Back     alignment and domain information
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain Back     alignment and domain information
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain Back     alignment and domain information
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain Back     alignment and domain information
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain Back     alignment and domain information
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain Back     alignment and domain information
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins; solute binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 453
KOG3659|consensus629 100.0
KOG3660|consensus629 100.0
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 100.0
COG0733 439 Na+-dependent transporters of the SNF family [Gene 100.0
KOG3660|consensus 629 99.35
KOG3659|consensus 629 99.26
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 99.2
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.02
PF03845320 Spore_permease: Spore germination protein; InterPr 80.59
>KOG3659|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.5e-66  Score=536.44  Aligned_cols=257  Identities=46%  Similarity=0.946  Sum_probs=241.5

Q ss_pred             CEeeehHHHHHHHHHHHHhCCCChHHHHHHhccccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCCCCCCCCc
Q psy10392          1 MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWAECPTR   80 (453)
Q Consensus         1 ~l~lvGlPll~lE~~lGq~~~~g~i~~~~~~~p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lpW~~C~~~   80 (453)
                      |+++.|+|++++|+++||+.|+|++++|+|++|.++|+|++++++++.+..||+++++|+++|++.|+++++||++|+++
T Consensus       123 mli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s  202 (629)
T KOG3659|consen  123 MLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNS  202 (629)
T ss_pred             HHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCC------CCccccCCCccchhhhccccccCCC--CCCCcchHHHHHHHHHHHHHHHhhhhhcCcccccchhhh
Q psy10392         81 VFPNGSSL------VEPECLASTPTEYFWYRTTLDISPS--IDEPNGFNWQIAFALVLAWTVVYLCMMKGIASSPFVVYV  152 (453)
Q Consensus        81 ~~~n~~~~------~~~~~~~s~~~~~F~~~~vl~~s~~--i~~~~~l~w~l~~~l~~~Wiiv~~~v~kGI~~~~Kv~~~  152 (453)
                      ||.+.+..      .+.+|..++|+++||+|.+++.+++  ++|.|+++|++++|++++|+++++.++||+|+.||++++
T Consensus       203 ~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~v  282 (629)
T KOG3659|consen  203 WNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWV  282 (629)
T ss_pred             ccCCCccCccccccCchhhhccchhHHHHHhhcccccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEee
Confidence            98765432      2455667789999999999988776  899999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHhhhhcccCCChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCccccceeE
Q psy10392        153 TSMFPYMVLIVFFLRGITLPGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFI  232 (453)
Q Consensus       153 ~~~~P~llliiL~ir~ltl~ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~a~~  232 (453)
                      ++++|++++.++++|++++||+..|+.|+++|||+|+.++.+|.+|++|+|||||+|+|+++.++|||+++||++|||++
T Consensus       283 tallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll  362 (629)
T KOG3659|consen  283 TALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALL  362 (629)
T ss_pred             ehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeechhhHHHHHHHHHHHHHhhhh
Q psy10392        233 VSFTNCCTSMFAAIVIFAIIETASL  257 (453)
Q Consensus       233 v~~~d~~~sll~gl~if~~~~~~~~  257 (453)
                      +++.|.++++++|+++|++++.++.
T Consensus       363 ~S~in~~ts~~sgfviFsvLg~~a~  387 (629)
T KOG3659|consen  363 TSIINCLTSFLSGFVIFSVLGYMAT  387 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988888888888888888776654

>KOG3660|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG3660|consensus Back     alignment and domain information
>KOG3659|consensus Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
3gjc_A513 Crystal Structure Of The E290s Mutant Of Leut With 1e-07
3gjc_A513 Crystal Structure Of The E290s Mutant Of Leut With 2e-04
3mpn_A507 F177r1 Mutant Of Leut Length = 507 1e-07
3mpn_A507 F177r1 Mutant Of Leut Length = 507 3e-04
2qju_A511 Crystal Structure Of An Nss Homolog With Bound Anti 1e-07
2qju_A511 Crystal Structure Of An Nss Homolog With Bound Anti 3e-04
2a65_A519 Crystal Structure Of Leutaa, A Bacterial Homolog Of 1e-07
2a65_A519 Crystal Structure Of Leutaa, A Bacterial Homolog Of 3e-04
3qs5_A519 Crystal Structure Of Leut Mutant I359q Bound To Sod 2e-07
3qs5_A519 Crystal Structure Of Leut Mutant I359q Bound To Sod 3e-04
3gjd_A515 Crystal Structure Of Leut With Bound Og Length = 51 2e-07
3gjd_A515 Crystal Structure Of Leut With Bound Og Length = 51 3e-04
3tu0_A519 Crystal Structure Of T355v, S354a, K288a Leut Mutan 2e-07
3tu0_A519 Crystal Structure Of T355v, S354a, K288a Leut Mutan 3e-04
3mpq_A507 I204r1 Mutant Of Leut Length = 507 3e-07
3mpq_A507 I204r1 Mutant Of Leut Length = 507 3e-04
3f3a_A508 Crystal Structure Of Leut Bound To L-Tryptophan And 3e-07
3f3a_A508 Crystal Structure Of Leut Bound To L-Tryptophan And 3e-04
3tt1_A519 Crystal Structure Of Leut In The Outward-Open Confo 4e-07
3tt1_A519 Crystal Structure Of Leut In The Outward-Open Confo 3e-04
3f3d_A517 Crystal Structure Of Leut Bound To L-Methionine And 6e-07
3f3d_A517 Crystal Structure Of Leut Bound To L-Methionine And 3e-04
3qs6_A519 Crystal Structure Of Leut Mutant F259v,I359q Bound 9e-07
3qs4_A519 Crystal Structure Of Leut Mutant F259v Bound To Sod 9e-07
4fxz_A513 Crystal Structure Of Leut-F253a Bound To L-Leucine 1e-06
3tt3_A519 Crystal Structure Of Leut In The Inward-Open Confor 1e-06
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 Back     alignment and structure 
Iteration: 1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 113/259 (43%), Gaps = 44/259 (16%)
Query: 6   GIPIFYLELAIGQRLRKGAIGVWNHVSP---YLVG-------IGIASAVVSFNVALYYNT 55
           GIP+ ++E A+G+    GA G  +  +P   YL+        +G+    +   VA+YY  
Sbjct: 55  GIPLMWIEWAMGRY--GGAQG--HGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVY 110
Query: 56  VIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSID 115
           + +W L +  +     +P  E P    PN +   +P+ +     E+ +    +   P  D
Sbjct: 111 IESWTLGFAIKFLVGLVP--EPP----PNAT---DPDSILRPFKEFLYSYIGV---PKGD 158
Query: 116 EPNGFNWQIAFALVLAWTVVYLCM-------MKGIASSPFVVYVTSMFPYMVLIVFFLRG 168
           EP      I    + A+ V  + M       ++GI+         +M    +L VF +  
Sbjct: 159 EP------ILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIR 212
Query: 169 ITL-----PGMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVD 223
           + L        + GL+ L+TP +  LK+P VW+ A  QIFF+L L FG +I Y+SY   D
Sbjct: 213 VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKD 272
Query: 224 NNCYRDAFIVSFTNCCTSM 242
            +        +  N   S+
Sbjct: 273 QDIVLSGLTAATLNEKASV 291
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound Og Length = 513 Back     alignment and structure
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 Back     alignment and structure
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound Antidepressant Length = 511 Back     alignment and structure
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 Back     alignment and structure
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of Na+/cl--dependent Neurotransmitter Transporters Length = 519 Back     alignment and structure
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 Back     alignment and structure
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og Length = 515 Back     alignment and structure
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 Back     alignment and structure
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In Complex With Alanine And Sodium Length = 519 Back     alignment and structure
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut Length = 507 Back     alignment and structure
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And L- Tryptophan Length = 519 Back     alignment and structure
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From Lipid Bicelles Length = 513 Back     alignment and structure
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation In Complex With Fab Length = 519 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query453
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 8e-29
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 3e-09
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure
 Score =  117 bits (296), Expect = 8e-29
 Identities = 56/268 (20%), Positives = 100/268 (37%), Gaps = 30/268 (11%)

Query: 1   MLAIEGIPIFYLELAIGQRLRKGAIGVWNHVSPYLVG------IGIASAVVSFNVALYYN 54
              + GIP+ ++E A+G+       G    +   L        +G+    +   VA+YY 
Sbjct: 50  AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 109

Query: 55  TVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSI 114
            + +W L +  +     +P             +  +P+ +     E+ +    +      
Sbjct: 110 YIESWTLGFAIKFLVGLVP---------EPPPNATDPDSILRPFKEFLYSYIGVPKGDEP 160

Query: 115 DEPNGFNWQIAFALVLAWT--VVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFL--RGIT 170
                    I F + +     ++   + KGI             P + ++  FL  R   
Sbjct: 161 ILKPSLFAYIVFLITMFINVSILIRGISKGIERF-----AKIAMPTLFILAVFLVIRVFL 215

Query: 171 LP----GMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNC 226
           L       + GL+ L+TP +  LK+P VW+ A  QIFF+L L FG +I Y+SY   D + 
Sbjct: 216 LETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDI 275

Query: 227 YRDAFIVSFTNCCTSMFAA--IVIFAII 252
                  +  N    +     I I A +
Sbjct: 276 VLSGLTAATLNEKAEVILGGSISIPAAV 303
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 100.0
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 99.37
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
Probab=100.00  E-value=3.9e-57  Score=477.40  Aligned_cols=241  Identities=20%  Similarity=0.333  Sum_probs=218.1

Q ss_pred             EeeehHHHHHHHHHHHH----hCCCChHHHHHHhccc--cccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCC--
Q psy10392          2 LAIEGIPIFYLELAIGQ----RLRKGAIGVWNHVSPY--LVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLP--   73 (453)
Q Consensus         2 l~lvGlPll~lE~~lGq----~~~~g~i~~~~~~~p~--~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lp--   73 (453)
                      ++++|+|++++|+++||    ++|+|++++|++++|+  |||+|++++++++++++||++++||+++|+++|+++++|  
T Consensus        51 l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~  130 (519)
T 2a65_A           51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP  130 (519)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            56889999999999999    8889999999999976  999999999999999999999999999999999999999  


Q ss_pred             CCCCCCcccCCCCCCCCccccCCCccchhhhccccccCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcCc-ccccchhhh
Q psy10392         74 WAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSIDEPNGFNWQIAFALVLAWTVVYLCMMKGI-ASSPFVVYV  152 (453)
Q Consensus        74 W~~C~~~~~~n~~~~~~~~~~~s~~~~~F~~~~vl~~s~~i~~~~~l~w~l~~~l~~~Wiiv~~~v~kGI-~~~~Kv~~~  152 (453)
                      |++|++.           ++. .+|.++|| +++++.++++++.+.++|+++++++++|+++++++.||+ |.++|+.++
T Consensus       131 w~~~~~~-----------~~~-~~~~~~~f-~~~l~~~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~  197 (519)
T 2a65_A          131 PPNATDP-----------DSI-LRPFKEFL-YSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKI  197 (519)
T ss_dssp             CC--CCH-----------HHH-HHHHHHHH-HHHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHH
T ss_pred             ccccCCc-----------ccc-cCcHHHHH-HHHHCCCCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            7654310           110 12344555 567888888888999999999999999999999999999 668999999


Q ss_pred             hhhhhHHHHHHhhhhcccCCC----hHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCcccc
Q psy10392        153 TSMFPYMVLIVFFLRGITLPG----MSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYR  228 (453)
Q Consensus       153 ~~~~P~llliiL~ir~ltl~g----a~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r  228 (453)
                      +..+|+++++++++|++||||    +.+|++|+++|||++|.|+++|.+|++|+|||||+|+|++++||||+|+|+|+.|
T Consensus       198 ~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~  277 (519)
T 2a65_A          198 AMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVL  277 (519)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHh
Confidence            999999999999999999999    9999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEeechhhHHHHHHHHHHHHHhh
Q psy10392        229 DAFIVSFTNCCTSMFAAIVIFAIIETA  255 (453)
Q Consensus       229 ~a~~v~~~d~~~sll~gl~if~~~~~~  255 (453)
                      |++++++.|+.+++++|+++|+.++++
T Consensus       278 ~a~~v~~~n~~~sllaG~~IF~~lgf~  304 (519)
T 2a65_A          278 SGLTAATLNEKAEVILGGSISIPAAVA  304 (519)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999876654
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 453
d2a65a1509 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte 3e-33
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score =  129 bits (324), Expect = 3e-33
 Identities = 68/398 (17%), Positives = 127/398 (31%), Gaps = 38/398 (9%)

Query: 1   MLAIEGIPIFYLELAIGQRLRKGAIGVWNHV------SPYLVGIGIASAVVSFNVALYYN 54
              + GIP+ ++E A+G+       G    +      + +   +G+    +   VA+YY 
Sbjct: 46  AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 105

Query: 55  TVIAWCLFYFAQSFRAQLPWAECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDISPSI 114
            + +W L +  +     +P          +         L       + Y         I
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPPNATDPDS--------ILRPFKEFLYSYIGVPKGDEPI 157

Query: 115 DEPNGFNWQI-AFALVLAWTVVYLCMMKGIASSPFVVYVTSMFPYMVLIVFFLRGITLPG 173
            +P+ F + +    + +  +++   + KGI     +   T     + L++      T  G
Sbjct: 158 LKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNG 217

Query: 174 -MSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAFI 232
             + GL+ L+TP +  LK+P VW+ A  QIFF+L L FG +I Y+SY   D +       
Sbjct: 218 TAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLT 277

Query: 233 VSFTNCCTSMFAAIVIFAIIETASLRLGEVH-------------WYMLKEPHVWLEAGTQ 279
            +  N    +     I      A   +                                 
Sbjct: 278 AATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLG 337

Query: 280 IFFSLGLAFGGLIAYSSYNPVDNNCYRDAFIVSFTNCCTSTFAAIVIFAIIERTGLIAYS 339
             +   L F GL +  +          D   +S  +    T A +   A +      +  
Sbjct: 338 FLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLD 397

Query: 340 SYNPVDNNCYRDAFIVSFTNCCTSMFAAIVIFAIIGFK 377
                      D +  +       +   I+ F I G  
Sbjct: 398 EM---------DFWAGTIGVVFFGLTELIIFFWIFGAD 426

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query453
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 100.0
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 99.07
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=7.8e-48  Score=406.48  Aligned_cols=235  Identities=22%  Similarity=0.313  Sum_probs=189.3

Q ss_pred             EeeehHHHHHHHHHHHHhCCCChHHHHHHh------ccccccchhhHHHHhHHhhhhhHHHHHHHHHHHHHhhhCCCCCC
Q psy10392          2 LAIEGIPIFYLELAIGQRLRKGAIGVWNHV------SPYLVGIGIASAVVSFNVALYYNTVIAWCLFYFAQSFRAQLPWA   75 (453)
Q Consensus         2 l~lvGlPll~lE~~lGq~~~~g~i~~~~~~------~p~~~giG~~~~l~~~li~~yY~vi~~W~l~Y~~~s~~~~lpW~   75 (453)
                      ++++|+|++++|+++||++|++++++|+++      +|++||+|++++++++++++||+++++|+++|+++++++++||+
T Consensus        47 l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~  126 (509)
T d2a65a1          47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP  126 (509)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            578999999999999999999999999987      57789999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCccccCCCccchhhhcccccc--CCCCCCCcc-hHHHHHHHHHHHHHHHhhhhhcCcccccchhhh
Q psy10392         76 ECPTRVFPNGSSLVEPECLASTPTEYFWYRTTLDI--SPSIDEPNG-FNWQIAFALVLAWTVVYLCMMKGIASSPFVVYV  152 (453)
Q Consensus        76 ~C~~~~~~n~~~~~~~~~~~s~~~~~F~~~~vl~~--s~~i~~~~~-l~w~l~~~l~~~Wiiv~~~v~kGI~~~~Kv~~~  152 (453)
                      .|++.+.++.          .++.++|+++.+...  ++...++.. ....+++++.++|.+++.++.||+|+.+|+++.
T Consensus       127 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~  196 (509)
T d2a65a1         127 PPNATDPDSI----------LRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMP  196 (509)
T ss_dssp             CC--CCHHHH----------HHHHHHHHHHHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             cccccCcccc----------ccchHHHHHhhhccccCCCccccchHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHH
Confidence            8875532211          134566666544322  222222322 233456678899999999999999999999766


Q ss_pred             hhhhhHHHHHHhhhhcccCC-ChHhhccccccccccccCChhHHHHHHhhHhhcCccccCceeeeccccCCCCcccccee
Q psy10392        153 TSMFPYMVLIVFFLRGITLP-GMSHGLSHLFTPKWYMLKEPHVWLEAGTQIFFSLGLAFGGLIAYSSYNPVDNNCYRDAF  231 (453)
Q Consensus       153 ~~~~P~llliiL~ir~ltl~-ga~~Gl~~lf~pd~s~L~~~~vW~~A~~QaffSLgiG~G~lit~gSy~~~~~n~~r~a~  231 (453)
                      +..+|++++++...+..+++ |+.+|++|+++|||++|.|+++|.+|++|+|||+|+|+|.+++||||+|+|+|+.||++
T Consensus       197 ~l~~~~~~l~i~~~~l~~~~gga~~gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~  276 (509)
T d2a65a1         197 TLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGL  276 (509)
T ss_dssp             HHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccCCCcHHHHhhhccCCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccce
Confidence            65555544444444433334 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeechhhHHHHHH
Q psy10392        232 IVSFTNCCTSMFAAI  246 (453)
Q Consensus       232 ~v~~~d~~~sll~gl  246 (453)
                      +++..|..++++++.
T Consensus       277 ~v~~~~~~~si~~~~  291 (509)
T d2a65a1         277 TAATLNEKAEVILGG  291 (509)
T ss_dssp             HHHHHHHHHHHTTHH
T ss_pred             EEEecccceeecccc
Confidence            988888877776643
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure