Psyllid ID: psy10418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MDDEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKKSESGIRKL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mddeysstltviDVFDIASEIGKEFEKIIDqygpdavtsiMPKVIVALEHLECLAsknerentKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLehegsspmksqqlspeiDISVLQKLRGQVDSLRDQMRLKEKelgyrnsdvdnsdipdlsnkavydlddpnrprftTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLehegsspmksqqlspeiDISALQKLRGQVDSLRDQMRLKEKelgyrnsdvdNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAekenedlynsqettseeerpvqgplpyepddapwkksesgirkl
Flexible Loop (DISEMBL)
mddeysstltvidvFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKrlehegsspmksqqlspEIDISVLQKLRGQVDSLRDQMRLKekelgyrnsdvdnsdipdlsnkavydlddpnrpRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRlehegsspmksqqlspEIDISALQKLRGQVDSLRDQMRLKekelgyrnsdvdnlkrqIDRLtstvrelrrkqrlsqvqvrgLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLynsqettseeerpvqgplpyepddapwkksesgirkl
Low Complexity Region (SEG)
MDDEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLeheklereveeieeswkeeTQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKKSESGIRKL
Disordered region (IsUnstruct)
*******TLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLA***************************************************************************************************************************************************************************************************************************************************************QVQVRGLIDERADFLAALQD***********************************************************
Disordered Region (DISOPRED)
******S**TVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALE************************************************************************************************************************************************************************************************************************************************************************************************************************************************IR*L
Disordered Region (DISEMBL)
********LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKL**************TQQLVEMVNRLQEENKKLS****************SPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS****************SPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEK********************GPLPYEPDD*************
Disordered Region (DISPRO)
*****SSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEG********LSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQE********************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPMKSQQLSPEIDISVxxxxxxxxxxxxxxxxxxxxxLGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPMKSQQLSPEIDISAxxxxxxxxxxxxxxxxxxxxxLGYRNSDxxxxxxxxxxxxxxxxxxxxxQRLSQVQVRGLIDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQETTSEEERPVQGPLPYEPDDAPWKKSESGIRKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
O76878	443	RILP-like protein homolog	yes	N/A	0.912	0.801	0.335	1e-40
Q9JJC6	406	RILP-like protein 1 OS=Mu	yes	N/A	0.411	0.394	0.385	2e-22
Q5EBL4	403	RILP-like protein 1 OS=Ho	yes	N/A	0.413	0.399	0.364	3e-21
D3ZUQ0	406	RILP-like protein 1 OS=Ra	yes	N/A	0.411	0.394	0.379	3e-21
Q17QG3	403	RILP-like protein 1 OS=Bo	yes	N/A	0.413	0.399	0.364	4e-21
A0PJP4	394	RILP-like protein 1 OS=Xe	yes	N/A	0.390	0.385	0.362	8e-21
Q0IHE5	394	RILP-like protein 1 OS=Xe	N/A	N/A	0.413	0.408	0.358	1e-20
A0PJT0	406	RILP-like protein 1 OS=Da	yes	N/A	0.616	0.591	0.277	4e-13
Q6AYA0	197	RILP-like protein 2 OS=Ra	no	N/A	0.172	0.340	0.447	5e-09
Q99LE1	197	RILP-like protein 2 OS=Mu	no	N/A	0.172	0.340	0.447	5e-09

>sp|O76878|RIPL_DROME RILP-like protein homolog OS=Drosophila melanogaster GN=CG11448 PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/408 (33%), Positives = 213/408 (52%), Gaps = 53/408 (12%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           + V+DV+D+AS+IGKE+E+I+D++G DAV+ +MPK+I  LE LE LA+KNEREN  +QEL
Sbjct: 20  IGVVDVYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALATKNERENATIQEL 79

Query: 69  GDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
            D +++LE EKLE+         E+E IEE W+ ET +LV++V+ LQ+ENK+L K+ +  
Sbjct: 80  RDKVAQLESEKLEKAEFRRRFDKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDL 139

Query: 120 GSSPMKSQQLSPEI-----------------DISVLQKLRGQVDSLRDQMRLKEKELGYR 162
            SS  +S  L   +                 D  VLQ+L+ Q+   RD+++ +E+EL  +
Sbjct: 140 QSSSAQSSGLGASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDK 199

Query: 163 NSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMV 222
            S++++ +I     KA  + D   R +   A++K +               EER  F  +
Sbjct: 200 YSELEHLNIQAERLKAS-ERDTRRRHKLMQAQVKTLC--------------EERADF--L 242

Query: 223 NRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR 282
            +LQ++++++++  +  G +  +++ L    D        GQ D  R   R   +EL   
Sbjct: 243 AQLQDQSREINQLRKRLGLAEKENEDLVASYD-------DGQNDPNRP--RYTTRELKEL 293

Query: 283 NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342
            S+ D L   ID L   + EL+   +    + R                        ++ 
Sbjct: 294 ISERDELLTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDDEEE 353

Query: 343 GLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
             AE    +   + ET    + PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 354 AAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRKF 401

Drosophila melanogaster (taxid: 7227)

>sp|Q9JJC6|RIPL1_MOUSE RILP-like protein 1 OS=Mus musculus GN=Rilpl1 PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/174 (38%), Positives = 109/174 (62%), Gaps = 14/174 (8%)

Query: 7   STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQ 66
           + LTV+DV+DIAS +G EFE++IDQ+G +++  +MPKV+  LE LE L S++     +L 
Sbjct: 20  AELTVMDVYDIASLVGHEFERVIDQHGCESIARLMPKVVRVLEILEVLVSRHHV-APELD 78

Query: 67  ELGDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE 117
           EL   + +L  E+++R         E+E +E+ W+ E Q L+  + +LQEENK+L   L 
Sbjct: 79  ELRLELDRLRVERMDRIEKERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLN 138

Query: 118 HE--GSS--PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD 167
           H+  G S    + Q+   E +  V+++L+  VD  RD++R K++ELG +N DV+
Sbjct: 139 HKDVGFSEEEFQKQEGMSERERQVMKRLKEVVDKQRDELRAKDRELGLKNEDVE 192

Neuroprotective protein, which acts by sequestring GAPDH in the cytosol and prevent the apoptotic function of GAPDH in the nucleus. Competes with SIAH1 for binding GAPDH. Does not regulate lysosomal morphology and distribution.

Mus musculus (taxid: 10090)

>sp|Q5EBL4|RIPL1_HUMAN RILP-like protein 1 OS=Homo sapiens GN=RILPL1 PE=1 SV=1

 Score =  103 bits (257), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 104/173 (60%), Gaps = 12/173 (6%)

Query: 7   STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNE------- 59
           + LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++        
Sbjct: 20  AELTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHVAPELDE 79

Query: 60  RENTKLQELGDHISKLEHE-KLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118
                 +   + + ++E E K ++E+E +E+ W+ E Q L+  + +LQEENK+L   L H
Sbjct: 80  LRLELDRLRLERMDRIEKERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSH 139

Query: 119 E----GSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD 167
           +         +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+
Sbjct: 140 KDVNFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVE 192

Neuroprotective protein, which acts by sequestring GAPDH in the cytosol and prevent the apoptotic function of GAPDH in the nucleus. Competes with SIAH1 for binding GAPDH (By similarity). Does not regulate lysosomal morphology and distribution.

Homo sapiens (taxid: 9606)

>sp|D3ZUQ0|RIPL1_RAT RILP-like protein 1 OS=Rattus norvegicus GN=Rilpl1 PE=1 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 108/174 (62%), Gaps = 14/174 (8%)

Query: 7   STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQ 66
           + LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++     +L 
Sbjct: 20  AELTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHV-APELD 78

Query: 67  ELGDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLE 117
           EL   + +L  E+++R         E+E +E+ W+ E Q L+  + +LQEENK+L   L 
Sbjct: 79  ELRLELDRLRVERMDRIEKERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLN 138

Query: 118 HE--GSS--PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD 167
           H+  G S   ++  +   E +  V+++L+  VD  RD++R K++EL  +N DV+
Sbjct: 139 HKDVGFSEEELQKHEGMSERERQVMKRLKEVVDKQRDEIRAKDRELVLKNEDVE 192

Neuroprotective protein, which acts by sequestring GAPDH in the cytosol and prevent the apoptotic function of GAPDH in the nucleus. Competes with SIAH1 for binding GAPDH. Does not regulate lysosomal morphology and distribution.

Rattus norvegicus (taxid: 10116)

>sp|Q17QG3|RIPL1_BOVIN RILP-like protein 1 OS=Bos taurus GN=RILPL1 PE=2 SV=1

 Score =  102 bits (255), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 105/173 (60%), Gaps = 12/173 (6%)

Query: 7   STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNE------- 59
           + LTV+DV+DIAS +G EFE++IDQ+G +A+  ++PKV+  LE LE L S++        
Sbjct: 20  AELTVMDVYDIASLVGHEFERVIDQHGCEAIARLIPKVVRVLEILEVLVSRHHVAPELDE 79

Query: 60  RENTKLQELGDHISKLEHE-KLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118
                 +   + + ++E E K ++E+E +E+ W+ E Q L+  + +LQEENK+L   L H
Sbjct: 80  LRLELDRLRLERMDRIEKERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSH 139

Query: 119 EGSS----PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD 167
           +  S      +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+
Sbjct: 140 KDVSFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVE 192

Neuroprotective protein, which acts by sequestring GAPDH in the cytosol and prevent the apoptotic function of GAPDH in the nucleus. Competes with SIAH1 for binding GAPDH. Does not regulate lysosomal morphology and distribution.

Bos taurus (taxid: 9913)

>sp|A0PJP4|RIPL1_XENTR RILP-like protein 1 OS=Xenopus tropicalis GN=rilpl1 PE=2 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 104/182 (57%), Gaps = 30/182 (16%)

Query: 7   STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNE------- 59
           + LTV+DV+DIAS +G+EFE++IDQYG + +  +MPKV+  LE LE L S+N        
Sbjct: 12  AELTVMDVYDIASAVGQEFERVIDQYGCEVIGRLMPKVVRVLEILEVLVSRNHINPEMEE 71

Query: 60  RENTKLQELGDHISKLEHE-KLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL-- 116
                 +   + + ++E E K ++E+E +E+ W+ E Q L+  + +LQEENK+L   L  
Sbjct: 72  LRLELDRLRLERMDRIEKEKKHQKELELVEDVWRGEAQDLLNQIAQLQEENKQLVSNLSQ 131

Query: 117 -----------EHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSD 165
                      +HEG S  + Q         V++KL+  VD  RD++R K++EL  +N D
Sbjct: 132 KDINLTEEEFQKHEGMSERERQ---------VMKKLKEVVDKQRDEIRAKDRELVLKNED 182

Query: 166 VD 167
           V+
Sbjct: 183 VE 184

Neuroprotective protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q0IHE5|RIPL1_XENLA RILP-like protein 1 OS=Xenopus laevis GN=rilpl1 PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 104/173 (60%), Gaps = 12/173 (6%)

Query: 7   STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNE------- 59
           + LTV+DV+DIAS +G+EFE++IDQYG + +  +MPKV+  LE LE L S+N        
Sbjct: 12  AELTVMDVYDIASAVGQEFERVIDQYGCEVIGRLMPKVVRVLEILEVLVSRNHINPEMEE 71

Query: 60  RENTKLQELGDHISKLEHEKLE-REVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118
                 +   + + ++E EK   +E+E +E+ W+ E Q L+  +++LQEENK+L   L H
Sbjct: 72  LRLELDRLRLERMDRIEKEKKHLKELELVEDVWRGEAQDLLNQISQLQEENKQLLTNLSH 131

Query: 119 EGSS----PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD 167
           +  +      +  +   E +  V++KL+  VD  RD++R +++EL  +N DV+
Sbjct: 132 KDVNLTEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRARDRELVLKNEDVE 184

Neuroprotective protein.

Xenopus laevis (taxid: 8355)

>sp|A0PJT0|RIPL1_DANRE RILP-like protein 1 OS=Danio rerio GN=rilpl1 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 136/256 (53%), Gaps = 16/256 (6%)

Query: 3   DEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN---- 58
           D+ ++ L+V+DV+DIA+ +G E E++I++ G + ++ ++P+V+  LE LE L S++    
Sbjct: 11  DKSAAELSVMDVYDIAAALGLELERVIERTGAELLSRLVPRVVRVLELLEVLVSRSSSSP 70

Query: 59  ----ERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSK 114
                R       L       + +K ++E+E +E+ W+ E Q L+  +++LQEENK L  
Sbjct: 71  DTDELRLELDRLRLERLERLEKEKKHKKELELVEDVWRGEAQDLLCQISQLQEENKTLLN 130

Query: 115 RLEHEGSSPMKSQQLSPEIDIS-----VLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNS 169
            L     SP+  + +  +  ++     V++KL+  VD  RD++R K++EL  +N DV+  
Sbjct: 131 NLSIR-ESPLTEEDIQKQEGMTERERQVMKKLKEVVDKQRDEIRAKDRELTLKNDDVEAL 189

Query: 170 DIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKM-VNRLQEE 228
               +S     + D  +R     A+ K ++  +  L+      ++E    +  V+RL+E+
Sbjct: 190 Q-QQMSRLMKINQDVRHRVSVVEAQGKSLIQQKVELEAAAQTQQQEVSSLRQEVSRLKEK 248

Query: 229 NKKLSKRLEHEGSSPM 244
            K+ S+  E E   P+
Sbjct: 249 LKEQSRSNEEEAQEPV 264

Neuroprotective protein.

Danio rerio (taxid: 7955)

>sp|Q6AYA0|RIPL2_RAT RILP-like protein 2 OS=Rattus norvegicus GN=Rilpl2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 46/67 (68%)

Query: 154 LKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELE 213
           LK++  G R + V  S++    +K V DL DPNRPRFT  EL+++L +RN LK++L  ++
Sbjct: 86  LKQEVEGLRRAGVSGSEVNLGPDKMVVDLTDPNRPRFTLQELRDVLQERNKLKSQLLLVQ 145

Query: 214 EERQCFK 220
           EE QC++
Sbjct: 146 EELQCYR 152

Involved in cell shape and neuronal morphogenesis, positively regulating the establishment and maintenance of dendritic spines. May activate RAC1.

Rattus norvegicus (taxid: 10116)

>sp|Q99LE1|RIPL2_MOUSE RILP-like protein 2 OS=Mus musculus GN=Rilpl2 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 45/67 (67%)

Query: 154 LKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELE 213
           LK++  G R + V  + +    +K V DL DPNRPRFT  EL+E+L +RN LK++L  ++
Sbjct: 86  LKQEVEGLRKAGVSGAQVNLGPDKMVVDLTDPNRPRFTLQELREVLQERNKLKSQLLLVQ 145

Query: 214 EERQCFK 220
           EE QC++
Sbjct: 146 EELQCYR 152

Involved in cell shape and neuronal morphogenesis, positively regulating the establishment and maintenance of dendritic spines. May activate RAC1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
242013391	331	Vimentin, putative [Pediculus humanus co	0.804	0.945	0.352	5e-46
328778610	379	PREDICTED: RILP-like protein homolog [Ap	0.786	0.807	0.376	5e-44
328713434	452	PREDICTED: RILP-like protein homolog iso	0.940	0.809	0.343	6e-43
195131197	426	GI15695 [Drosophila mojavensis] gi|19390	0.874	0.798	0.339	9e-42
195400805	428	GJ15229 [Drosophila virilis] gi|19414165	0.879	0.799	0.337	1e-41
307178015	380	RILP-like protein-like protein [Camponot	0.786	0.805	0.350	1e-41
332022084	380	RILP-like protein-like protein [Acromyrm	0.784	0.802	0.349	2e-41
195347614	443	GM19135 [Drosophila sechellia] gi|194121	0.912	0.801	0.338	7e-40
194763547	439	GF21015 [Drosophila ananassae] gi|190618	0.902	0.799	0.343	9e-40
18543225	443	CG11448, isoform A [Drosophila melanogas	0.912	0.801	0.335	7e-39

>gi|242013391|ref|XP_002427391.1| Vimentin, putative [Pediculus humanus corporis] gi|212511765|gb|EEB14653.1| Vimentin, putative [Pediculus humanus corporis]

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 138/392 (35%), Positives = 215/392 (54%), Gaps = 79/392 (20%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           L+V+DV+DIASEIGKEFEKIID +GPD V S+MPKVI ALEHLE  + +NE+ENT +Q+L
Sbjct: 8   LSVVDVYDIASEIGKEFEKIIDGHGPDIVMSLMPKVIYALEHLENFSLQNEKENTIVQDL 67

Query: 69  GDHISKLEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
              I+KLE EK+         ERE+E+IE+ WK ET+ LVE++ ++QEENK+L   +  +
Sbjct: 68  KSKITKLELEKIEKAEDQKRFERELEQIEDHWKSETKDLVEVLGKVQEENKRLRGTVADQ 127

Query: 120 GSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAV 179
            +    +  ++ E+DI VLQ+L+  VDS R+Q+R KEKEL  + S++++           
Sbjct: 128 KNLSASNSTIATEVDIVVLQRLKAMVDSQREQIRNKEKELANKVSELES---------LT 178

Query: 180 YDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHE 239
            ++D     R T    +E+      ++ ++  L EER  F  + +LQ++ K++    ++ 
Sbjct: 179 TEVD-----RLTKTG-RELRRKHKIVQNQVRTLIEERADF--ITQLQDQQKEIVTLKQNL 230

Query: 240 GSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST 299
           G +  +++ L+                               +NS VD   + +  L   
Sbjct: 231 GVAEKENEDLT-------------------------------KNSIVDLTNKAVFDLDDP 259

Query: 300 VRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETT 359
            R      R +  +++ ++ ER +  A + D + E+               +LY  + TT
Sbjct: 260 DR-----PRFTTSELKEILQERNELRAKISDLEDEL---------------ELYRPKGTT 299

Query: 360 -SEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
            ++ + PVQGPLPYEPDDAPWKK S + IRKL
Sbjct: 300 ENDTDAPVQGPLPYEPDDAPWKKTSGTNIRKL 331

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778610|ref|XP_393625.4| PREDICTED: RILP-like protein homolog [Apis mellifera]

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 148/393 (37%), Positives = 216/393 (54%), Gaps = 87/393 (22%)

Query: 15  FDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISK 74
           +DIASEIGKE EK+ID YG ++VT++MPKVI ALE LE LA+KNERENT +QEL   IS+
Sbjct: 16  YDIASEIGKECEKLIDSYGVESVTNLMPKVIHALELLENLATKNERENTTVQELRAKISQ 75

Query: 75  LEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL-EHEGSSPM 124
           LE++K+         E+E+E+IEE W++E++ LVEMV RLQEEN++LS+ L E    S  
Sbjct: 76  LENDKIGKAEDRQRFEKELEQIEEHWRQESRDLVEMVTRLQEENRRLSEALQESRSDSQY 135

Query: 125 KSQQL---SPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYD 181
            S+Q    S E+DI+VLQ LR  +D  RDQ+R ++KEL  +NS+++N     L+ + V  
Sbjct: 136 SSKQTFTASQEVDIAVLQHLRSMIDKQRDQIRGRDKELLQKNSEIEN-----LTGQ-VEK 189

Query: 182 LDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGS 241
           L    R         E+   +   + +   L EER  F  + +LQ++N++L         
Sbjct: 190 LGVVGR---------ELKRKQRQAQMQARGLVEERADF--LAQLQDQNRELI-------- 230

Query: 242 SPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR 301
                                    +LR ++ L +KE    N D+  L+   D     V 
Sbjct: 231 -------------------------NLRARLGLAKKE----NEDLSKLQGCPDLTNKAVY 261

Query: 302 ELR--RKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETT 359
           +L    + R +  +++ ++ ER +  A + D + E+               +LY  +   
Sbjct: 262 DLDDPDRPRFTTAELKEILHERNELKARVSDLEDEL---------------ELYRPKPEI 306

Query: 360 SEEER--PVQGPLPYEPDDAPWKK-SESGIRKL 389
            E+++  PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 307 VEDDKDAPVQGPLPYEPDDAPWKKTSESGIRKF 339

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328713434|ref|XP_001947770.2| PREDICTED: RILP-like protein homolog isoform 1 [Acyrthosiphon pisum]

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 144/419 (34%), Positives = 228/419 (54%), Gaps = 53/419 (12%)

Query: 3   DEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNEREN 62
           D Y  +L+V+DV+D+A +IG+EFE IID YG DA+T +MPKV+ ALE +E LA KNEREN
Sbjct: 12  DNYKCSLSVVDVYDMAQDIGREFESIIDAYGTDAITGLMPKVVSALEQMEILAMKNEREN 71

Query: 63  TKLQELGDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLS 113
           T + +L   I +LE +K ER         E+E+IE+ W+E+  +L+  V+RLQ++N+KL+
Sbjct: 72  TTVDDLRATIQQLEMDKQERTEDRIKYEKEMEQIEDKWREDYNELLTTVSRLQDDNRKLT 131

Query: 114 KRL---EHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSD 170
           + L   E +     KSQ LSP++D   LQ+LR  VD +RD +R  E +L  ++++VD+ +
Sbjct: 132 ESLQAAEKDKIVDSKSQVLSPDVDTVALQRLRHTVDQMRDSIRSYEHQLYSKSNEVDSLN 191

Query: 171 IP-DLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEE----RQCFKMVNRL 225
           +  D     + DL    + RF   + + ++ +R  + ++L + ++E    RQ F +    
Sbjct: 192 VQMDRLQTTLKDLR--RKHRFAQLQCRGLVEERADILSQLQKQQKEFISLRQRFGVA--- 246

Query: 226 QEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSD 285
           Q+EN+ LSK  +             P++   A+  L        D+ +    EL    ++
Sbjct: 247 QKENEDLSKYRDD-----------LPDLKNKAIYDLDDP-----DRPKFTTNELKDILTE 290

Query: 286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLA 345
            + LK +++ L   + + R  ++ +  Q R  I E       L++      + +Q    A
Sbjct: 291 RNELKTRVNDLEDELLQYRPVEQSTISQERDEIQETRVRRILLRNCTTRTDSHRQNPDTA 350

Query: 346 EKENEDLYN-------SQETTS-------EEERPVQGPLPYEPDDAPWKKS-ESGIRKL 389
             + ED          S + TS       +EE PVQGPLP EPDDAPWK++ ESGIRKL
Sbjct: 351 PGDKEDTQVSIITPEISSDVTSPIRSDDEQEEGPVQGPLPLEPDDAPWKRNPESGIRKL 409

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195131197|ref|XP_002010037.1| GI15695 [Drosophila mojavensis] gi|193908487|gb|EDW07354.1| GI15695 [Drosophila mojavensis]

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 140/412 (33%), Positives = 219/412 (53%), Gaps = 72/412 (17%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           + V+DV+D+AS+IGKE+E+I+D+YG DAV+ +MPK+I  LE LE LA+KNERENT +QEL
Sbjct: 20  IGVVDVYDLASDIGKEYERIMDRYGTDAVSGLMPKIINTLELLEALATKNERENTTIQEL 79

Query: 69  GDHISKLEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
            + I++LE EKL         E+E+E IEE W+ ET +LVE+V+ LQ+ENK+L K+ +  
Sbjct: 80  REKIAQLESEKLEKAEFRRRFEKELELIEEQWRSETNELVELVSSLQDENKRLVKQTQDL 139

Query: 120 GSSPMKSQQLSPEI-----------------DISVLQKLRGQVDSLRDQMRLKEKELGYR 162
            SS  +S  L   +                 D  VLQ+L+ Q+   RD+++ +E+EL  +
Sbjct: 140 QSSSAQSSGLGASLTESIISMTNNELHSALSDTQVLQRLKEQIYKQRDELKQRERELQDK 199

Query: 163 NSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRL-NELEEERQCFKM 221
            S++++ +I     KA  + D   R +   A++K +  +R     +L ++  E  Q  K 
Sbjct: 200 YSELEHVNIQAERLKA-SERDTRRRHKLMQAQVKTLCEERADFLAQLQDQCREINQLRKR 258

Query: 222 VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEID--ISALQKLRGQVDSLRDQM-RLKEKE 278
           +   ++EN+ L +  + + + P + +  + E+   IS   +L   +D+L +Q+  LK   
Sbjct: 259 LGLAEKENEDLVQSYDDDQNDPNRPRYTTRELKELISERDELLTTIDNLNEQLAELKPAN 318

Query: 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAAL 338
            G R        RQI     +  +    +    V+                         
Sbjct: 319 SGKRT-------RQISSSDDSDDDDDDNEADDGVE------------------------- 346

Query: 339 KQQLGLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
                 A+ E+E++  + ET    + PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 347 ------ADVEDENV--AGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRKF 390

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400805|ref|XP_002059006.1| GJ15229 [Drosophila virilis] gi|194141658|gb|EDW58075.1| GJ15229 [Drosophila virilis]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/409 (33%), Positives = 213/409 (52%), Gaps = 67/409 (16%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           + V+DV+D+AS+IGKE+E+I+D+YG DAV+ +MPK+I  LE LE LA+KNEREN+ +QEL
Sbjct: 20  IGVVDVYDLASDIGKEYERIMDRYGTDAVSGLMPKIINTLELLEALATKNERENSTIQEL 79

Query: 69  GDHISKLEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
            + I++LE EKL         E+E+E IEE W+ ET +LV++V+ LQ+ENK+L K+ +  
Sbjct: 80  REKIAQLESEKLEKAEFRRRFEKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDL 139

Query: 120 GSSPMKSQQLSPEI-----------------DISVLQKLRGQVDSLRDQMRLKEKELGYR 162
            SS  +S  L   +                 D  VLQ+L+ Q+   RD+++ +E+EL  +
Sbjct: 140 QSSSAQSSGLGASLTESIISMTNNELHSALSDTQVLQRLKEQIYKQRDELKQRERELQDK 199

Query: 163 NSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRL-NELEEERQCFKM 221
            S++++ +I     KA  + D   R +   A++K +  +R     +L ++  E  Q  K 
Sbjct: 200 YSELEHVNIQAERLKA-SERDTRRRHKLMQAQVKTLCEERADFLAQLQDQCREINQLRKR 258

Query: 222 VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGY 281
           +   ++EN+ L +  + + + P +     P      L++L  + D L             
Sbjct: 259 LGLAEKENEDLVQSYDDDQNDPNR-----PRYTTRELKELISERDELL------------ 301

Query: 282 RNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQ 341
             + +DNL +Q+  L       R +Q  S        D  AD                  
Sbjct: 302 --TTIDNLNQQLAELKPATSAKRTRQISSSDDSDDDDDNEAD------------------ 341

Query: 342 LGLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
               E + +D   + ET    + PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 342 -DGVEADVDDDNVAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRKF 389

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178015|gb|EFN66876.1| RILP-like protein-like protein [Camponotus floridanus]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 138/394 (35%), Positives = 208/394 (52%), Gaps = 88/394 (22%)

Query: 15  FDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISK 74
           +DIASEIGKE EK+ID +G  +VT++MPKVI ALE LE LA KNERENT +QEL   IS+
Sbjct: 16  YDIASEIGKECEKLIDLFGAQSVTNLMPKVINALELLENLAIKNERENTTVQELSAKISQ 75

Query: 75  LEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL-EHEGSSPM 124
           LE +K+         E+E+E+IEE W++E++ LV MV RLQEEN++L++ L E +  S  
Sbjct: 76  LESDKIGKAEDRQRFEKELEQIEEHWRQESRDLVAMVTRLQEENRRLAEALQESQSDSQY 135

Query: 125 KSQQL----SPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVY 180
            S+Q     S E+D++VLQ LR  +D  RDQ+R +++EL  + ++++N          V 
Sbjct: 136 SSKQTTITPSQEVDVAVLQHLRSMIDKQRDQIRARDRELSQKTAEIEN------LTAQVE 189

Query: 181 DLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEG 240
            L         T   +E+   +   + +   L EER  F  + +LQ++N++L        
Sbjct: 190 KL---------TVVGRELKRKQRQAQMQARGLVEERADF--LAQLQDQNRELI------- 231

Query: 241 SSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTV 300
                               LRG++   R +           N D+  L+   D     +
Sbjct: 232 -------------------NLRGRLGMARKE-----------NEDLSKLQGCPDLTNKAI 261

Query: 301 REL--RRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQET 358
            +L    + R +  +++ ++ ER +  A + D + E+               +LY  +  
Sbjct: 262 YDLDDPDRPRFTTAELKEILHERNELKARVSDLEDEL---------------ELYRPKPE 306

Query: 359 TSEEER--PVQGPLPYEPDDAPWKK-SESGIRKL 389
             E+++  PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 307 IPEDDKDAPVQGPLPYEPDDAPWKKSSESGIRKF 340

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022084|gb|EGI62409.1| RILP-like protein-like protein [Acromyrmex echinatior] gi|332022086|gb|EGI62411.1| RILP-like protein-like protein [Acromyrmex echinatior]

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/395 (34%), Positives = 212/395 (53%), Gaps = 90/395 (22%)

Query: 15  FDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISK 74
           +DIASEIGKE EK+ID +G ++VT++MPKVI ALE LE LA+KNERENT +QEL   IS+
Sbjct: 16  YDIASEIGKECEKLIDLFGVESVTNLMPKVINALELLENLATKNERENTMVQELSAKISQ 75

Query: 75  LEHEKL---------EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEG----- 120
           LE +K+         E+E+E+IEE W++E++ LV MV RLQEEN++L++ L HE      
Sbjct: 76  LESDKIGKAEDRQRFEKELEQIEEHWRQESRDLVAMVTRLQEENRRLAESL-HESRSDSQ 134

Query: 121 -SSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAV 179
            SS   +   S E+DI+VLQ LR  +D  R+Q+R +++EL  + ++++N     LS +  
Sbjct: 135 YSSKQTTITASQEVDIAVLQHLRSMIDKQREQIRARDRELSQKTAEIEN-----LSAQV- 188

Query: 180 YDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHE 239
                       T   +E+   +   + +   L EER  F  + +LQ++N++L       
Sbjct: 189 ---------EKLTVLGRELKRKQRQAQMQARGLVEERADF--LAQLQDQNRELI------ 231

Query: 240 GSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST 299
                                      +LR ++ + +KE    N D+  L+   D     
Sbjct: 232 ---------------------------NLRGRLGMAKKE----NEDLSKLQGCPDLTNKA 260

Query: 300 VRELR--RKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQE 357
           + +L    + R +  +++ ++ ER +  A + D + E+               +LY  + 
Sbjct: 261 IYDLDDPDRPRFTTAELKEILHERNELKARVSDLEDEL---------------ELYRPKP 305

Query: 358 TTSEEER--PVQGPLPYEPDDAPWKK-SESGIRKL 389
              E+++  PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 306 EIPEDDKDAPVQGPLPYEPDDAPWKKSSESGIRKF 340

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195347614|ref|XP_002040347.1| GM19135 [Drosophila sechellia] gi|194121775|gb|EDW43818.1| GM19135 [Drosophila sechellia]

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 138/408 (33%), Positives = 213/408 (52%), Gaps = 53/408 (12%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           + V+DV+D+AS+IGKE+E+I+D++G DAV+ +MPK+I  LE LE LA+KNEREN  +QEL
Sbjct: 20  IGVVDVYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALATKNERENATIQEL 79

Query: 69  GDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
            D +++LE EKLE+         E+E IEE W+ ET +LV++V+ LQ+ENK+L K+ +  
Sbjct: 80  RDKVAQLESEKLEKAEFRRRFDKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDL 139

Query: 120 GSSPMKSQQLSPEI-----------------DISVLQKLRGQVDSLRDQMRLKEKELGYR 162
            SS  +S  L   +                 D  VLQ+L+ Q+   RD+++ +E+EL  +
Sbjct: 140 QSSSAQSSGLGASLTESIISMTNHELHGALSDTQVLQRLKEQIYKQRDELKHRERELADK 199

Query: 163 NSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMV 222
            S++++ +I     KA  + D   R +   A++K +               EER  F  +
Sbjct: 200 YSELEHLNIQAERLKAS-ERDTRRRHKLMQAQVKTLC--------------EERADF--L 242

Query: 223 NRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR 282
            +LQ++N+++++  +  G +  +++ L    D        GQ D  R   R   +EL   
Sbjct: 243 AQLQDQNREINQLRKRLGLAEKENEDLVASYD-------DGQNDPNRP--RYTTRELKEL 293

Query: 283 NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342
            S+ D L   ID L   + EL+   +    + R                        ++ 
Sbjct: 294 ISERDELLTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDDEEE 353

Query: 343 GLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
             AE    +   + ET    + PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 354 AAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRKF 401

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763547|ref|XP_001963894.1| GF21015 [Drosophila ananassae] gi|190618819|gb|EDV34343.1| GF21015 [Drosophila ananassae]

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 140/408 (34%), Positives = 217/408 (53%), Gaps = 57/408 (13%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           + V+DV+D+AS+IGKE+E+I+D++G DAV+ +MPK+I  LE LE LA+KNEREN+ +QEL
Sbjct: 20  IGVVDVYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALATKNERENSTIQEL 79

Query: 69  GDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
            D +++LE EKLE+         E+E IEE W+ ET +LV++V+ LQ+ENK+L K+ +  
Sbjct: 80  RDKVAQLESEKLEKAEFRRRFEKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDL 139

Query: 120 GSSPMKSQQLSPEI-----------------DISVLQKLRGQVDSLRDQMRLKEKELGYR 162
            SS  +S  L   +                 D  VLQ+L+ Q+   RD+++ +E+EL  +
Sbjct: 140 QSSSAQSSGLGASLTESIISMTNNELHSALSDTQVLQRLKEQIYKQRDELKQRERELQDK 199

Query: 163 NSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMV 222
            S++++ +I     KA  + D   R +   A++K +               EER  F  +
Sbjct: 200 YSELEHLNIQAERLKAS-ERDTRRRHKLMQAQVKTLC--------------EERADF--L 242

Query: 223 NRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR 282
            +LQ++++++++  +  G +  +++ L    D        GQ D  R   R   +EL   
Sbjct: 243 AQLQDQSREINQLRKRLGLAEKENEDLVASYD-------DGQNDPNRP--RYTTRELKEL 293

Query: 283 NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342
            S+ D L   ID L   + EL+   +    + R           +  +    VA      
Sbjct: 294 ISERDELLTTIDGLNEQLAELKPPSQAKAKRQRHFSSSDD----SDDEDDGHVADNDDDE 349

Query: 343 GLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
              E    D+  + ET  E + PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 350 EEEEAAEADVPAAGETPPEHDAPVQGPLPYEPDDAPWKKSSESGIRKF 397

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|18543225|ref|NP_569910.1| CG11448, isoform A [Drosophila melanogaster] gi|74893562|sp|O76878.1|RIPL_DROME RecName: Full=RILP-like protein homolog gi|3219569|emb|CAA19654.1| EG:132E8.4 [Drosophila melanogaster] gi|7290155|gb|AAF45619.1| CG11448, isoform A [Drosophila melanogaster] gi|16648230|gb|AAL25380.1| GH23825p [Drosophila melanogaster] gi|220947180|gb|ACL86133.1| CG11448-PA [synthetic construct] gi|220956706|gb|ACL90896.1| CG11448-PA [synthetic construct]

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/408 (33%), Positives = 213/408 (52%), Gaps = 53/408 (12%)

Query: 9   LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQEL 68
           + V+DV+D+AS+IGKE+E+I+D++G DAV+ +MPK+I  LE LE LA+KNEREN  +QEL
Sbjct: 20  IGVVDVYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALATKNERENATIQEL 79

Query: 69  GDHISKLEHEKLER---------EVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHE 119
            D +++LE EKLE+         E+E IEE W+ ET +LV++V+ LQ+ENK+L K+ +  
Sbjct: 80  RDKVAQLESEKLEKAEFRRRFDKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDL 139

Query: 120 GSSPMKSQQLSPEI-----------------DISVLQKLRGQVDSLRDQMRLKEKELGYR 162
            SS  +S  L   +                 D  VLQ+L+ Q+   RD+++ +E+EL  +
Sbjct: 140 QSSSAQSSGLGASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDK 199

Query: 163 NSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMV 222
            S++++ +I     KA  + D   R +   A++K +               EER  F  +
Sbjct: 200 YSELEHLNIQAERLKAS-ERDTRRRHKLMQAQVKTLC--------------EERADF--L 242

Query: 223 NRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR 282
            +LQ++++++++  +  G +  +++ L    D        GQ D  R   R   +EL   
Sbjct: 243 AQLQDQSREINQLRKRLGLAEKENEDLVASYD-------DGQNDPNRP--RYTTRELKEL 293

Query: 283 NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL 342
            S+ D L   ID L   + EL+   +    + R                        ++ 
Sbjct: 294 ISERDELLTTIDTLNEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDDEEE 353

Query: 343 GLAEKENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKK-SESGIRKL 389
             AE    +   + ET    + PVQGPLPYEPDDAPWKK SESGIRK 
Sbjct: 354 AAAEANELEPPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRKF 401

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
FB|FBgn0024985	443	CG11448 [Drosophila melanogast	0.922	0.810	0.321	1.3e-36
UNIPROTKB|F1NJ88	401	RILPL1 "Uncharacterized protei	0.676	0.655	0.307	2.6e-24
UNIPROTKB|E2RDX1	403	RILPL1 "Uncharacterized protei	0.933	0.900	0.262	5.3e-21
UNIPROTKB|Q0IHE5	394	rilpl1 "RILP-like protein 1" [	0.663	0.654	0.297	8.9e-21
UNIPROTKB|A0PJP4	394	rilpl1 "RILP-like protein 1" [	0.668	0.659	0.302	8.9e-21
MGI|MGI:1922945	406	Rilpl1 "Rab interacting lysoso	0.933	0.894	0.260	1.1e-20
UNIPROTKB|Q5EBL4	403	RILPL1 "RILP-like protein 1" [	0.748	0.722	0.299	5.6e-20
UNIPROTKB|F1RFL4	403	RILPL1 "Uncharacterized protei	0.748	0.722	0.299	1.4e-19
UNIPROTKB|F1MSP7	403	RILPL1 "RILP-like protein 1" [	0.663	0.640	0.303	2.5e-19
RGD|1307973	406	Rilpl1 "Rab interacting lysoso	0.933	0.894	0.260	2.6e-19

FB|FBgn0024985 CG11448 [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 128/398 (32%), Positives = 200/398 (50%)

Query:    11 VIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGD 70
             V+DV+D+AS+IGKE+E+I+D++G DAV+ +MPK+I  LE LE LA+KNEREN  +QEL D
Sbjct:    22 VVDVYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALATKNERENATIQELRD 81

Query:    71 HISKLXXXXXXXXXXXXXXXXX---------XXTQQLVEMVNRLQEENKKLSKRLEHEGS 121
              +++L                            T +LV++V+ LQ+ENK+L K+ +   S
Sbjct:    82 KVAQLESEKLEKAEFRRRFDKELELIEEQWRSETNELVDLVSSLQDENKRLVKQTQDLQS 141

Query:   122 SPMKSQQLSPEIDISVLQKLRGQVDS-LRDQMRLKE-KELGYRNSDVDNSDIPDLSNKAV 179
             S  +S  L   +  S++     ++ S L D   L+  KE  Y+  D       +L +K  
Sbjct:   142 SSAQSSGLGASLTESIISMTNHELHSALSDTQVLQRLKEQIYKQRDELKHRERELQDK-Y 200

Query:   180 YDLDDPN--RPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLE 237
              +L+  N    R   +E ++       ++ ++  L EER  F  + +LQ++++++++  +
Sbjct:   201 SELEHLNIQAERLKASE-RDTRRRHKLMQAQVKTLCEERADF--LAQLQDQSREINQLRK 257

Query:   238 HEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKE-KELGYRNSDVDNLKRQIDRL 296
               G +  +++ L    D        GQ D  R +   +E KEL    S+ D L   ID L
Sbjct:   258 RLGLAEKENEDLVASYD-------DGQNDPNRPRYTTRELKEL---ISERDELLTTIDTL 307

Query:   297 TSTVRELRRKQRLSQVQVRGLI-----DERADFLAALQDHQREVAALKQQLGLAEKENED 351
                + EL+   +    + R        DE  D   A  D   +     ++   AE    +
Sbjct:   308 NEQLAELKPPSQAKGKRQRHFSSSDDSDEDDDGHVADNDDDDD-----EEEAAAEANELE 362

Query:   352 LYNSQETTSEEERPVQGPLPYEPDDAPWKKS-ESGIRK 388
                + ET    + PVQGPLPYEPDDAPWKKS ESGIRK
Sbjct:   363 PPAAGETPPGHDAPVQGPLPYEPDDAPWKKSSESGIRK 400

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0048812 "neuron projection morphogenesis" evidence=IMP

UNIPROTKB|F1NJ88 RILPL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 90/293 (30%), Positives = 146/293 (49%)

Query:     3 DEYSSTLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN---- 58
             ++ ++ LTV+DV+DIAS +G+EFE++IDQ+G +A+  +MPKV+  LE LE L S+N    
Sbjct:    15 EKNAAELTVMDVYDIASAVGQEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRNHINP 74

Query:    59 ERENTKLQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKL 112
             E E  +L+      E  D I K                     Q L+  + +LQEENK+L
Sbjct:    75 EMEELRLELDRLRLERMDRIEK--ERKHQKELELVEDVWRGEAQDLLTQIAQLQEENKQL 132

Query:   113 SKRLEHEG----SSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 168
                L H+         +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+ 
Sbjct:   133 MTNLSHKDINFTEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVEA 192

Query:   169 SDIPDLSNKAVYDLDDPNRPRFTTAEL--KEILHDRNTLKTRLNELEEERQCFKMVNRLQ 226
               +    N+ +  ++   R R T  E   K ++  +  L+  L   E+E      +  L+
Sbjct:   193 --LQQQQNRLM-KINHDLRHRITVVEAQGKALIEQKVELEAYLQTKEQE------MGTLR 243

Query:   227 EENKKLSKRLEHEGSSPMKSQQLSPEID--ISALQKLRGQV-DSLRDQMRLKE 276
              E  KL ++L+ E S   +  Q  P  D  +S  +KL   + D  R +  L+E
Sbjct:   244 AELGKLREKLQGEDSQNGEEIQTEPNNDDCLSESEKLAMDLKDPNRPRFTLQE 296

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:1901214 "regulation of neuron death" evidence=IEA

UNIPROTKB|E2RDX1 RILPL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 260 (96.6 bits), Expect = 5.3e-21, P = 5.3e-21
 Identities = 105/400 (26%), Positives = 184/400 (46%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++    E +  +
Sbjct:    22 LTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHVAPELDELR 81

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L H
Sbjct:    82 LELDRLRLERMDRIEK--ERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSH 139

Query:   119 EGSS----PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             + +S      +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+       
Sbjct:   140 KDASFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVEALQQQQT 199

Query:   175 S-NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233
                K  +DL   +R     A+ K ++  +  L+  L   E+E      +  L+ E  KL 
Sbjct:   200 RLMKINHDLR--HRVTVVEAQGKALIEQKVELEADLQTKEQE------MGSLRAELGKLR 251

Query:   234 KRLEHEGSSPMKSQ-QLSP--EIDISALQKLRGQV-DSLRDQMRLKEKELGYRNSDVDNL 289
             +RL+ E S   + + Q  P  E  IS  +K+   + D  R +  L+E        DV + 
Sbjct:   252 ERLQGELSQNGEEEPQTEPGGEESISEAEKVAMDLKDPNRPRFTLQELR------DVLHE 305

Query:   290 KRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKEN 349
             + ++      ++E     +  +++    I +    +      Q E + +K+      ++ 
Sbjct:   306 RNELKSKVFLLQEELAYYKSEEIEEENRIPQPPPVVHPRMSPQPE-SGIKRLFSFFSRDK 364

Query:   350 EDLYNSQETTSEEERPVQGPLPYEPDDAPWKKSESGIRKL 389
             + L N+Q     +E   Q    +  DD+  ++ +  ++ L
Sbjct:   365 KRLANTQRNVHIQESFGQWANSHR-DDSYTEQGQEALQHL 403

GO:1901214 "regulation of neuron death" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q0IHE5 rilpl1 "RILP-like protein 1" [Xenopus laevis (taxid:8355)]

 Score = 258 (95.9 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 85/286 (29%), Positives = 142/286 (49%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G+EFE++IDQYG + +  +MPKV+  LE LE L S+N    E E  +
Sbjct:    14 LTVMDVYDIASAVGQEFERVIDQYGCEVIGRLMPKVVRVLEILEVLVSRNHINPEMEELR 73

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  +++LQEENK+L   L H
Sbjct:    74 LELDRLRLERMDRIEK--EKKHLKELELVEDVWRGEAQDLLNQISQLQEENKQLLTNLSH 131

Query:   119 EG----SSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +         +  +   E +  V++KL+  VD  RD++R +++EL  +N DV+   +   
Sbjct:   132 KDVNLTEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRARDRELVLKNEDVEA--LQQQ 189

Query:   175 SNKAVYDLDDPNRPRFTTAEL--KEILHDRNTLKTRLNELEEERQCFKM-VNRLQEENKK 231
              ++ +  ++   R R T  E   K ++  +  L+  L   E+E    ++ + +L++   K
Sbjct:   190 QSRLI-KINHDLRHRVTVVEAQGKALIEQKVELEAYLQTKEQEAASMRIEIGKLRD---K 245

Query:   232 LSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQV-DSLRDQMRLKE 276
             L K   H     +K++ L+ E  I   +K    + DS R +  L+E
Sbjct:   246 L-KGEHHTNGEEIKTETLNEEC-IFETEKFSLDLKDSNRPRFTLQE 289

GO:0005829 "cytosol" evidence=ISS

GO:1901214 "regulation of neuron death" evidence=ISS

UNIPROTKB|A0PJP4 rilpl1 "RILP-like protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 258 (95.9 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 86/284 (30%), Positives = 139/284 (48%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G+EFE++IDQYG + +  +MPKV+  LE LE L S+N    E E  +
Sbjct:    14 LTVMDVYDIASAVGQEFERVIDQYGCEVIGRLMPKVVRVLEILEVLVSRNHINPEMEELR 73

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L  
Sbjct:    74 LELDRLRLERMDRIEK--EKKHQKELELVEDVWRGEAQDLLNQIAQLQEENKQLVSNLSQ 131

Query:   119 EG----SSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +         +  +   E +  V++KL+  VD  RD++R K++EL  +N DV+       
Sbjct:   132 KDINLTEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELVLKNEDVEALQ-QQQ 190

Query:   175 SNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKM-VNRLQEENKKLS 233
             S     + D  +R     A+ K ++  +  L+  L   E+E    ++ + +L++   KL 
Sbjct:   191 SRLMKINHDLRHRVTVVEAQGKALIEQKVELEAYLQTKEQEAASMRLEIGKLRD---KL- 246

Query:   234 KRLEHEGSSPMKSQQLSPEIDISALQKLRGQV-DSLRDQMRLKE 276
             K  +H     +K++ L+ E  I   +KL   + DS R +  L+E
Sbjct:   247 KGEQHTNGEEIKTETLNEE-SILETEKLSLDLKDSNRPRFTLQE 289

GO:0005829 "cytosol" evidence=ISS

GO:1901214 "regulation of neuron death" evidence=ISS

MGI|MGI:1922945 Rilpl1 "Rab interacting lysosomal protein-like 1" [Mus musculus (taxid:10090)]

 Score = 258 (95.9 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 105/403 (26%), Positives = 184/403 (45%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G EFE++IDQ+G +++  +MPKV+  LE LE L S++    E +  +
Sbjct:    22 LTVMDVYDIASLVGHEFERVIDQHGCESIARLMPKVVRVLEILEVLVSRHHVAPELDELR 81

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L H
Sbjct:    82 LELDRLRVERMDRIEK--ERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLNH 139

Query:   119 E--GSSP--MKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +  G S    + Q+   E +  V+++L+  VD  RD++R K++ELG +N DV+       
Sbjct:   140 KDVGFSEEEFQKQEGMSERERQVMKRLKEVVDKQRDELRAKDRELGLKNEDVEALQQQQT 199

Query:   175 S-NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233
                K  +DL   +R     A+ K ++  +  L+  L   E+E      +  L+ E  KL 
Sbjct:   200 RLMKINHDLR--HRVTVVEAQGKALIEQKVELEADLQTKEQE------MGSLRAELGKLR 251

Query:   234 KRL--EHEGSSPMKSQQLSPEID----ISALQKLRGQV-DSLRDQMRLKEKELGYRNSDV 286
             +RL  EH  +   +  ++ P+ D    IS  +K    + D  R +  L+E        DV
Sbjct:   252 ERLQGEHSQNGEEEEAEIQPQPDGEESISDAEKAALDLKDPNRPRFTLQELR------DV 305

Query:   287 DNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAE 346
              + + ++      ++E     +  +++    I +           Q E + +K+      
Sbjct:   306 LHERNELKSKVFLLQEELAYYKSEEIEEENRIPQPPPITHPRTSPQPE-SGIKRLFSFFS 364

Query:   347 KENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKKSESGIRKL 389
             ++ + L N+Q  T   E   Q  +  + DD   ++ +  ++ L
Sbjct:   365 RDKKRLANTQRPTHIHESFGQWAIT-QRDDGYTEQGQEALQHL 406

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:1901214 "regulation of neuron death" evidence=ISO;IMP

UNIPROTKB|Q5EBL4 RILPL1 "RILP-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 98/327 (29%), Positives = 156/327 (47%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++    E +  +
Sbjct:    22 LTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHVAPELDELR 81

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L H
Sbjct:    82 LELDRLRLERMDRIEK--ERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSH 139

Query:   119 E----GSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +         +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+       
Sbjct:   140 KDVNFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVEALQQQQT 199

Query:   175 S-NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233
                K  +DL   +R     A+ K ++  +  L+  L   E+E      +  L+ E  KL 
Sbjct:   200 RLMKINHDLR--HRVTVVEAQGKALIEQKVELEADLQTKEQE------MGSLRAELGKLR 251

Query:   234 KRLEHEGSSPMKSQ-QLSP--EIDISALQKLRGQV-DSLRDQMRLKEKE--LGYRN---S 284
             +RL+ E S   + + +  P  E  IS  +K+   + D  R +  L+E    L  RN   S
Sbjct:   252 ERLQGEHSQNGEEEPETEPVGEESISDAEKVAMDLKDPNRPRFTLQELRDVLHERNELKS 311

Query:   285 DVDNLKRQIDRLTSTVRELRRKQRLSQ 311
              V  L+ ++    S   E+  + R+ Q
Sbjct:   312 KVFLLQEELAYYKS--EEMEEENRIPQ 336

GO:0005829 "cytosol" evidence=ISS

GO:1901214 "regulation of neuron death" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1RFL4 RILPL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 250 (93.1 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 98/327 (29%), Positives = 157/327 (48%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++    E +  +
Sbjct:    22 LTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHVAPELDELR 81

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L H
Sbjct:    82 LELDRLRLERMDRIEK--ERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSH 139

Query:   119 EGSS----PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +  S      +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+       
Sbjct:   140 KDVSFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVEALQQQQT 199

Query:   175 S-NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233
                K  +DL   +R     A+ K ++  +  L+  L   E+E      +  L+ E  KL 
Sbjct:   200 RLMKINHDLR--HRVTVVEAQGKALIEQKVELEADLQTKEQE------MGSLRAELGKLR 251

Query:   234 KRLEHEGSSPMKSQ-QLSP--EIDISALQKLRGQV-DSLRDQMRLKEKE--LGYRN---S 284
             +RL+ E S     + ++ P  E  +S  +K+   + D  R +  L+E    L  RN   S
Sbjct:   252 ERLQGELSQNGDEEPEMEPGGEECVSEAEKVAMDLKDPNRPRFTLQELRDVLHERNELKS 311

Query:   285 DVDNLKRQIDRLTSTVRELRRKQRLSQ 311
              V  L+ ++    S   E+  + R+ Q
Sbjct:   312 KVFLLQEELAYYKS--EEIEEENRIPQ 336

GO:1901214 "regulation of neuron death" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MSP7 RILPL1 "RILP-like protein 1" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 87/287 (30%), Positives = 141/287 (49%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++    E +  +
Sbjct:    22 LTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHVAPELDELR 81

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L H
Sbjct:    82 LELDRLRLERMDRIEK--ERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLSH 139

Query:   119 EGSS----PMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +  S      +  +   E +  V++KL+  VD  RD++R K++ELG +N DV+       
Sbjct:   140 KDVSFSEEEFQKHEGMSERERQVMKKLKEVVDKQRDEIRAKDRELGLKNEDVEALQQQQT 199

Query:   175 S-NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233
                K  +DL   +R     A+ K ++  +  L+  L   E+E      +  L+ E  KL 
Sbjct:   200 RLMKINHDLR--HRVTVVEAQGKALIEQKVELEADLQTKEQE------MGSLRAELGKLR 251

Query:   234 KRLEHEGSSPMKSQ---QLSPEIDISALQKLRGQV-DSLRDQMRLKE 276
             +RL+ E +   + +   +L  E  +S  +K+   + D  R +  L+E
Sbjct:   252 ERLQGELNQNGEEEPVAELGGEECVSEAEKVAMDLKDPNRPRFTLQE 298

GO:1901214 "regulation of neuron death" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1307973 Rilpl1 "Rab interacting lysosomal protein-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 2.6e-19, P = 2.6e-19
 Identities = 105/403 (26%), Positives = 182/403 (45%)

Query:     9 LTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKN----ERENTK 64
             LTV+DV+DIAS +G EFE++IDQ+G +A+  +MPKV+  LE LE L S++    E +  +
Sbjct:    22 LTVMDVYDIASLVGHEFERVIDQHGCEAIARLMPKVVRVLEILEVLVSRHHVAPELDELR 81

Query:    65 LQ------ELGDHISKLXXXXXXXXXXXXXXXXXXXTQQLVEMVNRLQEENKKLSKRLEH 118
             L+      E  D I K                     Q L+  + +LQEENK+L   L H
Sbjct:    82 LELDRLRVERMDRIEK--ERKHQKELELVEDVWRGEAQDLLSQIAQLQEENKQLMTNLNH 139

Query:   119 E--GSSPMKSQQLS--PEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDL 174
             +  G S  + Q+     E +  V+++L+  VD  RD++R K++EL  +N DV+       
Sbjct:   140 KDVGFSEEELQKHEGMSERERQVMKRLKEVVDKQRDEIRAKDRELVLKNEDVEALQQQQT 199

Query:   175 S-NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLS 233
                K  +DL   +R     A+ K ++  +  L+  L   E+E      +  L+ E  KL 
Sbjct:   200 RLMKINHDLR--HRVTVVEAQGKALIEQKVELEADLQTKEQE------MGSLRAELGKLR 251

Query:   234 KRL--EHEGSSPMKSQQLSPEID----ISALQKLRGQV-DSLRDQMRLKEKELGYRNSDV 286
             +RL  EH  +   +  ++ P+ D    IS  +K    + D  R +  L+E        DV
Sbjct:   252 ERLQGEHSQNGEEEEAEIPPQPDGEESISDAEKAALDLKDPNRPRFTLQELR------DV 305

Query:   287 DNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAE 346
              + + ++      ++E     +  +++    I +           Q E + +K+      
Sbjct:   306 LHERNELKSKVFLLQEELAYYKSEEIEEENRIPQPPPITHPRTSPQPE-SGIKRLFSFFS 364

Query:   347 KENEDLYNSQETTSEEERPVQGPLPYEPDDAPWKKSESGIRKL 389
             ++   L N+Q  T   E   Q  + +  DD   ++ +  ++ L
Sbjct:   365 RDKRRLANTQRPTHIHESFGQWAITHR-DDGYTEQGQEALQHL 406

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:1901214 "regulation of neuron death" evidence=ISO;IDA

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O76878	RIPL_DROME	No assigned EC number	0.3357	0.9125	0.8013	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	389
pfam09744	158	pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated prot	1e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
pfam11461	60	pfam11461, RILP, Rab interacting lysosomal protein	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	0.003

>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 39/105 (37%), Positives = 69/105 (65%), Gaps = 5/105 (4%)

Query: 14  VFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHIS 73
           V+D+A+ I +EFE++ID YG + V ++MP VI  LE+L+ LAS+N+    +L+ L     
Sbjct: 1   VYDLANSIYQEFERLIDNYGEEVVKNLMPLVIRVLENLDSLASENQELEVELELL----- 55

Query: 74  KLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEH 118
           + ++E+L  + E  +E  K+  Q+L+E  + L++E K+L K++E 
Sbjct: 56  REDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIED 100

This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end. Length = 158

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 202 RNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRL-------EHEGSSPMKSQQLSPEID 254
            N L+ +L  LE + +  +    L+ E ++L   L         E    ++ +    E +
Sbjct: 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEE 254

Query: 255 I----SALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS 310
           +    + LQ+L  +++ LR ++   E+E+     ++  L  +I RL    + LR +    
Sbjct: 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314

Query: 311 QVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEEER 364
           + Q+  L  +  +  + L +   E+A L+++L   ++E E L    E    E  
Sbjct: 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 45/238 (18%), Positives = 101/238 (42%), Gaps = 7/238 (2%)

Query: 120 GSSPMKSQQLSPEIDISVLQK----LRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLS 175
           G S  K   L+ + ++  L++    L  Q++ L ++++  + EL      ++        
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713

Query: 176 NKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEER-QCFKMVNRLQEENKKLSK 234
            +   +            EL+++      L+  L ELEEE  +  + +  L+EE + L +
Sbjct: 714 LERQLEELK-RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEE 772

Query: 235 RLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQID 294
            L        + ++    +    L++L  +++    ++   E+EL       + L+++I+
Sbjct: 773 ALAKLKEEIEELEEKRQALQ-EELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 295 RLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDL 352
            L   + EL  K    + ++  L  E  +    L++ + E   L+ +L   E+E E+L
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEEL 889

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 64/322 (19%), Positives = 137/322 (42%), Gaps = 30/322 (9%)

Query: 59  ERENTKLQELGDHISKLEH--EKLEREVEEIEE----SWKEETQQLVEMVNRLQEENKKL 112
           ER    L+ L D + +LE   EKLER+ E+ E       +    +L  ++ +L+E  K+L
Sbjct: 182 ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKEL 241

Query: 113 SKRLEHEGSSPMKSQQLSPEID--ISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVD--N 168
            +  E       + ++L  E++     +++L+ +++ LR+++   ++EL     +++   
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELE 301

Query: 169 SDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228
            +I  L  +     ++         ELKE +            L EE         L++ 
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEE---------LEQL 352

Query: 229 NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 288
             +L +  E              E   + L++L    ++LR+++   E EL    ++++ 
Sbjct: 353 LAELEEAKEEL-----------EEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401

Query: 289 LKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKE 348
           LKR+I+ L   +  L  +    + +++ L  E  +    L++   E+  L++QL      
Sbjct: 402 LKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDR 461

Query: 349 NEDLYNSQETTSEEERPVQGPL 370
            ++L        EE + ++  L
Sbjct: 462 LKELERELAELQEELQRLEKEL 483

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 56/267 (20%), Positives = 120/267 (44%), Gaps = 30/267 (11%)

Query: 54  LASKNERENTKLQELGDHISKLEHE--KLEREVEEIEESWKE----------ETQQLVEM 101
              + E    +LQEL + + +L  E  +LE E+EE+++              + Q L E 
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER 310

Query: 102 VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGY 161
           +  L+ + ++L  +LE   S   +  +   E++   L++L+ +++SL  +  L+E E   
Sbjct: 311 LANLERQLEELEAQLEELESKLDELAEELAELE-EKLEELKEELESLEAE--LEELEAEL 367

Query: 162 RNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKM 221
              +    ++ +        +           ++  + ++   L+ RL  LE+ R+    
Sbjct: 368 EELESRLEELEEQLETLRSKVAQLEL------QIASLNNEIERLEARLERLEDRRE---- 417

Query: 222 VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGY 281
             RLQ+E ++L K+LE    + +K  Q   E     L++L+ +++ L + +    +EL  
Sbjct: 418 --RLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472

Query: 282 RNSDVDNLKRQIDRLTSTVRELRRKQR 308
               +D  +R++ +L + +  L R Q 
Sbjct: 473 AEQALDAAERELAQLQARLDSLERLQE 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 59/275 (21%), Positives = 122/275 (44%), Gaps = 23/275 (8%)

Query: 51  LECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENK 110
           LE    + E   ++L+EL + + +L+ E LE  ++E  E  + E   L E +  L+ E +
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLE--LKEEIEELEGEISLLRERLEELENELE 319

Query: 111 KLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSD 170
           +L +RLE       K +  + + ++   + L  +++ L  ++   ++EL  + S +    
Sbjct: 320 ELEERLEEL-----KEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374

Query: 171 IPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKM-VNRLQEEN 229
                                  EL E+  +   ++  L EL+ E +  +  + RL E  
Sbjct: 375 EELFEALR--------------EELAELEAELAEIRNELEELKREIESLEERLERLSERL 420

Query: 230 KKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNL 289
           + L + L+ E  + ++  Q   E     L++L  Q++ LRD+++  E+EL     ++  L
Sbjct: 421 EDLKEELK-ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRL 479

Query: 290 KRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADF 324
           ++++  L + +  L  +QR SQ     L    +  
Sbjct: 480 EKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|221118 pfam11461, RILP, Rab interacting lysosomal protein

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 191 TTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQ 247
           T  EL+E+L +RN LK ++  L+EE   +K  + L  E ++    L     +P K +
Sbjct: 1   TLQELREVLQERNELKAKVFLLQEELAYYK--SELLPEERRPGLPLPSTKLAPSKQR 55

RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol. RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. Length = 60

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 61/330 (18%), Positives = 123/330 (37%), Gaps = 68/330 (20%)

Query: 47  ALEHLECLASKNERENT----KLQELGDHISKLEHE--KLEREVEEIEESWKEETQQLVE 100
           A  +   L  K E E      + + L      +E +   LE E+E++ E   E  ++L E
Sbjct: 210 AERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEE 269

Query: 101 MVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELG 160
           +   L+E NKK+    E E    +K +    E +I+    L   +     ++   E+ L 
Sbjct: 270 IEQLLEELNKKIKDLGEEE-QLRVKEKIGELEAEIA---SLERSIAEKERELEDAEERLA 325

Query: 161 YRNSDVDN--SDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQC 218
              +++D   ++I +L                   E++E    R+ L     EL+EE + 
Sbjct: 326 KLEAEIDKLLAEIEELER-----------------EIEEERKRRDKLTEEYAELKEELE- 367

Query: 219 FKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKE 278
             +   L+E +K+                                     RD+++   ++
Sbjct: 368 -DLRAELEEVDKEF---------------------------------AETRDELKDYREK 393

Query: 279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAAL 338
           L     +++ LKR++DRL   ++ L  +       + G+  +  +     +D   E+   
Sbjct: 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453

Query: 339 KQQLGLA----EKENEDLYNSQETTSEEER 364
           + +L        K  ++LY+ +E     E+
Sbjct: 454 EWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 39/191 (20%), Positives = 78/191 (40%), Gaps = 26/191 (13%)

Query: 203 NTLKTRLNELEEERQCFKM--------VNRLQEENKKLSKRLEHEGSSPM---------- 244
             L+  L  L  E    +         +  L+ + ++L  +LE   S             
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343

Query: 245 -KSQQLSPEID--ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR 301
            K ++L  E++   + L++L  +++ L  ++   E++L    S V  L+ QI  L + + 
Sbjct: 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403

Query: 302 ELRRKQRLSQVQVRGLIDERADFL-----AALQDHQREVAALKQQLGLAEKENEDLYNSQ 356
            L  +    + +   L  E  + L     A L++ Q E+  L+++L   ++E E L  + 
Sbjct: 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463

Query: 357 ETTSEEERPVQ 367
           E   EE    +
Sbjct: 464 EELREELEEAE 474

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 64/293 (21%), Positives = 125/293 (42%), Gaps = 38/293 (12%)

Query: 72  ISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSP 131
           +SK +  K E E +       E T++ +E +  L EE +K  ++LE +     + Q+L  
Sbjct: 167 VSKYKERKEEAERKL------ERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKA 220

Query: 132 EIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFT 191
           E+    L  L  ++  LR ++   E+EL     +++                        
Sbjct: 221 ELRELELALLLAKLKELRKELEELEEELSRLEEELEE----------------------L 258

Query: 192 TAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSP 251
             EL+E   +   LK+ L EL EE      +  LQEE  +L + +E E    +   +   
Sbjct: 259 QEELEEAEKEIEELKSELEELREE------LEELQEELLELKEEIE-ELEGEISLLRERL 311

Query: 252 EIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ 311
           E   + L++L  +++ L++++   ++EL  R + ++ L++ +  L     EL  K     
Sbjct: 312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL 371

Query: 312 VQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQETTSEEER 364
            ++  L +   +    L + + E+A ++ +L   ++E E L    E  SE   
Sbjct: 372 EELEELFEALRE---ELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421

Length = 1163

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 47/238 (19%), Positives = 96/238 (40%), Gaps = 28/238 (11%)

Query: 138 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTA---- 193
           LQ+    + S   + +  E++L   N++++     +   +        +  R        
Sbjct: 609 LQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSL 668

Query: 194 --ELKEILHDR--------NTLKTRLNELEEERQCFKMV---NRLQEENKKLSKRLEHEG 240
             +L+  + +R          L  +L +L E++Q F      +  +   ++L+K    EG
Sbjct: 669 KDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAKWQVVEG 728

Query: 241 SSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTST- 299
               +  QLS  I+ +A  + + ++  L+ Q   +   L    + V  LKRQI+ L +T 
Sbjct: 729 ELDNQLAQLSAAIE-AARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEELETTI 787

Query: 300 ---------VRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKE 348
                    VRE R   + + +    L +ER +    L++ +     L+Q+L    K+
Sbjct: 788 ERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKD 845

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	100.0
KOG2077|consensus	832		99.71
PF11461	60	RILP: Rab interacting lysosomal protein; InterPro:	99.29
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	96.29
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	96.27
KOG2077|consensus	832		95.94
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	95.87
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.67
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.6
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	95.51
KOG0250|consensus	1074		95.09
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	94.84
KOG0161|consensus	1930		94.62
KOG4673|consensus	961		94.11
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	94.07
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.06
KOG0161|consensus	1930		93.8
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.76
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.55
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	93.04
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	92.7
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	92.09
PRK11637	428	AmiB activator; Provisional	91.81
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	91.52
PHA02562	562	46 endonuclease subunit; Provisional	91.08
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	91.01
KOG1029|consensus	1118		90.65
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	90.65
KOG0933|consensus	1174		89.2
KOG1853|consensus	333		89.13
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	88.94
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	88.87
PRK09039	343	hypothetical protein; Validated	88.75
PF15294	278	Leu_zip: Leucine zipper	88.63
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	88.57
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	88.44
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	88.41
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	88.2
KOG0996|consensus	1293		87.44
PRK04863	1486	mukB cell division protein MukB; Provisional	87.0
KOG4674|consensus	1822		85.69
PF10186	302	Atg14: UV radiation resistance protein and autopha	84.97
KOG0995|consensus	581		83.88
PF14662	193	CCDC155: Coiled-coil region of CCDC155	83.23
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	82.72
KOG0995|consensus	581		82.41
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	82.25
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	82.11
PRK02224	880	chromosome segregation protein; Provisional	81.83
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	81.8
KOG0612|consensus	1317		81.24

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=100.00  E-value=4.5e-34  Score=257.71  Aligned_cols=139  Identities=40%  Similarity=0.662  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHH----HhHH-----HHHH
Q psy10418         14 VFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLE----HEKL-----EREV   84 (389)
Q Consensus        14 VydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle----~Ek~-----~~El   84 (389)
                      ||+||++||+|||+|||.||+|+|+|||||||+|||+||+++++|+.++.+++.|+.++++|.    ++|.     +.++
T Consensus         1 Vy~lA~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l   80 (158)
T PF09744_consen    1 VYDLASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEEL   80 (158)
T ss_pred             ChHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999999998764    4443     6789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCC----------ccCCCCchHHHHHHHHHHHHHHHHHHHH
Q psy10418         85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPM----------KSQQLSPEIDISVLQKLRGQVDSLRDQM  152 (389)
Q Consensus        85 e~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~----------~~~~~~~e~er~vm~kLKe~VdkQRDei  152 (389)
                      .+++|.|++++++|.++|++|+++|++|...+...+....          .....+.+++++||+++++.|++|||+|
T Consensus        81 ~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~  158 (158)
T PF09744_consen   81 LELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI  158 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999966654333211          1223455789999999999999999986

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG2077|consensus

Probab=99.71  E-value=1.1e-17  Score=173.68  Aligned_cols=104  Identities=26%  Similarity=0.402  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhH----HHHhHH-----
Q psy10418         10 TVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISK----LEHEKL-----   80 (389)
Q Consensus        10 tveDVydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~q----le~Ek~-----   80 (389)
                      |++.|..||++||+|||+||.-||+|+|+.|||+||+|||.|+++++.|++|.++++.|+.+|+|    ||+||.     
T Consensus         1 MSerVs~lAgsIYREfErlIh~~~Ee~VKeLMPLVVNVLEnLD~v~~EnqEhevELElLrEDNEQl~tqYErEkalR~q~   80 (832)
T KOG2077|consen    1 MSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLITQYEREKALRTQL   80 (832)
T ss_pred             CchhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999885    688887     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418         81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLS  113 (389)
Q Consensus        81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~  113 (389)
                      ++.+..++|++.+.+++|..++..++...+.|-
T Consensus        81 eqKfie~eD~Le~~~kel~~k~e~~e~~~r~Le  113 (832)
T KOG2077|consen   81 EQKFIEGEDQLESTAKELIRKEEPIELGIRPLE  113 (832)
T ss_pred             HhhhcchHHHHHhhHHHHHhhhcchhheeeeec
Confidence            556677999999999999999999887766663

>PF11461 RILP: Rab interacting lysosomal protein; InterPro: IPR021563 RILP contains a domain which contains two coiled-coil regions and is found mainly in the cytosol

Probab=99.29  E-value=1.5e-12  Score=100.82  Aligned_cols=31  Identities=48%  Similarity=0.662  Sum_probs=28.6

Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHhhhh
Q psy10418        191 TTAELKEILHDRNTLKTRLNELEEERQCFKM  221 (389)
Q Consensus       191 Tl~ELreVL~ERNELKa~vf~LqEEl~~~~~  221 (389)
                      |++|||+||||||+||++||+|||||+||++
T Consensus         1 Tl~ELr~VL~ERNeLK~~v~~leEEL~~yk~   31 (60)
T PF11461_consen    1 TLQELREVLQERNELKARVFLLEEELAYYKS   31 (60)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999997

RILP is recruited onto late endosomal and lysosomal membranes by Rab7 and acts as a downstream effector of Rab7. This recruitment process is important for phagosome maturation and fusion with late endosomes and lysosomes. ; PDB: 1YHN_B.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=96.29  E-value=2.8  Score=47.44  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=29.1

Q ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        282 RNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       282 k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      ...++..+..++.++..-...+.......+.++..+-.+-.++...+.....++..+..++.
T Consensus       397 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~~~  458 (1164)
T TIGR02169       397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE  458 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444555555555555555555554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=96.27  E-value=0.087  Score=48.36  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=20.3

Q ss_pred             CCchhhHHHHHHHHHHHHHhHHHH
Q psy10418        249 LSPEIDISALQKLRGQVDSLRDQM  272 (389)
Q Consensus       249 ~~~~~d~~vm~kLKe~VdkQRdei  272 (389)
                      ++.++++++|+++++.|++|||+|
T Consensus       135 ~l~er~~e~l~~~~e~ver~k~~~  158 (158)
T PF09744_consen  135 RLHERERELLRKLKEHVERQKDEI  158 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455778999999999999999876

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG2077|consensus

Probab=95.94  E-value=0.044  Score=59.12  Aligned_cols=107  Identities=29%  Similarity=0.432  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcccccCCCCCC
Q psy10418         95 TQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKEL---GYRNSDVDNSDI  171 (389)
Q Consensus        95 ~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL---~~k~~dve~l~~  171 (389)
                      ..+|-.+|..|-.||-=|.+.+-.               -.++=.||.++|-+...|||---.++   +.+..+.+.-.+
T Consensus       324 KNDLIakVDeL~~E~~vLrgElea---------------~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddi  388 (832)
T KOG2077|consen  324 KNDLIAKVDELTCEKDVLRGELEA---------------VKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDI  388 (832)
T ss_pred             HHHHHHHHHhhccHHHHHhhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            456777777777777777665532               23566788899999999987532222   233333322222


Q ss_pred             cccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHH
Q psy10418        172 PDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQE  227 (389)
Q Consensus       172 ~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqe  227 (389)
                      |           =.-|-|||..|..-||-|||.+|.+++.|||-+..--|+..-++
T Consensus       389 P-----------mAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre  433 (832)
T KOG2077|consen  389 P-----------MAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRE  433 (832)
T ss_pred             c-----------HHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhc
Confidence            2           12378999999999999999999999999998876665554443

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=95.87  E-value=1.3  Score=49.85  Aligned_cols=223  Identities=22%  Similarity=0.274  Sum_probs=116.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy10418         87 IEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDV  166 (389)
Q Consensus        87 ~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dv  166 (389)
                      -.+.++.........-+.|+.++..|...|.+.+......+.. .+.=-.=+..++--|.+.+|.++.+++.+..--..+
T Consensus       323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~-~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~ki  401 (775)
T PF10174_consen  323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQ-IEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKI  401 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555666666677777788888877777666542211100 001111122233345555555555555443222222


Q ss_pred             CCCCCc---------ccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHH--------HHHHHhh-hhhHHHHHH
Q psy10418        167 DNSDIP---------DLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNEL--------EEERQCF-KMVNRLQEE  228 (389)
Q Consensus       167 e~l~~~---------~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~L--------qEEl~~~-~~V~qLqee  228 (389)
                      +++...         .+..+... ..|...-.+.+..|.+.+.|+--+-..+..+        .+++..| +-+..|...
T Consensus       402 e~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~  480 (775)
T PF10174_consen  402 ENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAK  480 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222110         00000000 1122223356677888888887777776655        4555555 334444555


Q ss_pred             HHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHH
Q psy10418        229 NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQR  308 (389)
Q Consensus       229 Nk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~  308 (389)
                      +..|.+.++....+-        ..-+.=..+|-.--.|++.+|+-..-++..++.+++.|..|+.+ ...+.+++-+..
T Consensus       481 ~~~LQ~eLsEk~~~l--------~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k-~~~~~e~~~r~~  551 (775)
T PF10174_consen  481 LESLQKELSEKELQL--------EDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEK-LRANAELRDRIQ  551 (775)
T ss_pred             HHHHhhhhHHHHHHH--------HHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHH-HHhCHhhcchHH
Confidence            555555555443100        00111222334444677788888888888888888888888888 555567777777


Q ss_pred             HHHHHHHHHHHH
Q psy10418        309 LSQVQVRGLIDE  320 (389)
Q Consensus       309 ~~q~Q~r~l~ee  320 (389)
                      .+...+-..-++
T Consensus       552 ~Le~ev~~~~ee  563 (775)
T PF10174_consen  552 QLEQEVTRYREE  563 (775)
T ss_pred             HHHHHHHHHHHH
Confidence            777766444443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.67  E-value=2.4  Score=41.51  Aligned_cols=70  Identities=17%  Similarity=0.470  Sum_probs=36.6

Q ss_pred             HHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        264 QVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       264 ~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      .+..-+.+++...+.+.....+++.|+.+...|.+...++.+.+.          .++.++.+.+...+.+|..++..+.
T Consensus       210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~----------~~~~~~~~~i~~le~el~~l~~~~~  279 (312)
T PF00038_consen  210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD----------EEREEYQAEIAELEEELAELREEMA  279 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH----------HHHHHHHHhhhccchhHHHHHHHHH
Confidence            344445555555555555555555555555555555555444443          3445555555555555555555554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.60  E-value=0.5  Score=46.21  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHH-hhhhhHHHHHHHHHHhhhhhhcC
Q psy10418        206 KTRLNELEEERQ-CFKMVNRLQEENKKLSKRLEHEG  240 (389)
Q Consensus       206 Ka~vf~LqEEl~-~~~~V~qLqeeNk~L~~~ls~~~  240 (389)
                      |..+..|+.=|+ |.-.|..|..+|+.|...+....
T Consensus         3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~   38 (312)
T PF00038_consen    3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELR   38 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            456677888897 55999999999999999999765

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=95.51  E-value=3.1  Score=48.55  Aligned_cols=70  Identities=26%  Similarity=0.264  Sum_probs=45.1

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhCcchhhchhhHHHHHHHhHHHHhccccccchhHHHhhhhhhHHHHh
Q psy10418          7 STLTVIDVFDIASEIGKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNERENTKLQELGDHISKLEHE   78 (389)
Q Consensus         7 ~~ltveDVydiA~~IG~EfErli~~~G~d~V~~LmpkVV~vLElLEs~~~~~~~e~~~~e~L~~~~~qle~E   78 (389)
                      +-|+=.+|..|+.+=..|.-.||+.  .--|..+-.+...+...|+.....-..-..-+.+|...++.|+.+
T Consensus       139 ~iV~QG~V~~i~~~kp~err~iiEE--aaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q  208 (1163)
T COG1196         139 SIVSQGKVEEIINAKPEERRKLIEE--AAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQ  208 (1163)
T ss_pred             ceeecccHHHHHcCCHHHHHHHHHH--HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567789999999999999998872  112666677777777777766544333234445555555555443

>KOG0250|consensus

Probab=95.09  E-value=8.9  Score=44.60  Aligned_cols=112  Identities=20%  Similarity=0.302  Sum_probs=65.0

Q ss_pred             HHHHHHHHHH-HhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhh
Q psy10418        207 TRLNELEEER-QCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSD  285 (389)
Q Consensus       207 a~vf~LqEEl-~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~e  285 (389)
                      -.+..++++. .....+.+++.....|.+++.+..+              +++.    .+-.++.++.-|   +.....+
T Consensus       351 re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~--------------~~~~----~~~~~~~e~e~k---~~~L~~e  409 (1074)
T KOG0250|consen  351 REVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEK--------------QTNN----ELGSELEERENK---LEQLKKE  409 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHh----hhhhhHHHHHHH---HHHHHHH
Confidence            3333444444 2344555555566666666665531              1111    223344444333   3344567


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK  339 (389)
Q Consensus       286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~  339 (389)
                      ||.++.|+.+|..--.++..+....+--.-..-.+..++.-.++..+.+|..|+
T Consensus       410 vek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk  463 (1074)
T KOG0250|consen  410 VEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLK  463 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788888888887777777777777766655555666666666666666666666

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=94.84  E-value=8.8  Score=43.27  Aligned_cols=26  Identities=15%  Similarity=0.325  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        318 IDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       318 ~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      -.+...+...+.+.+.++..++.++.
T Consensus       446 ~~~~~~l~~~~~~~~~~~~~l~~~~~  471 (1179)
T TIGR02168       446 EEELEELQEELERLEEALEELREELE  471 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444445555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0161|consensus

Probab=94.62  E-value=16  Score=45.27  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=93.1

Q ss_pred             ccHH-HHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHH
Q psy10418        190 FTTA-ELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDS  267 (389)
Q Consensus       190 FTl~-ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vdk  267 (389)
                      .+++ .+|.+-.+..+|.+.+-.++.++..- .-+-+++-++..+.....+.-.+   ..+++-..-+..-..+......
T Consensus      1515 ~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~e---k~Ee~E~~rk~~~~~i~~~q~~ 1591 (1930)
T KOG0161|consen 1515 HELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQE---KDEEIEELRKNLQRQLESLQAE 1591 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHh
Confidence            4444 67888889999999999999987532 22223444444444443332200   1111111122333333333333


Q ss_pred             hHHHHHHhhhhhhhhhh---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418        268 LRDQMRLKEKELGYRNS---DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL  342 (389)
Q Consensus       268 QRdeiRak~~el~~k~~---evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l  342 (389)
                      --.+-|+|.--+..|..   ||.-|..+++=..+.|.|+....+..|.|++.|.-+.-|-.++.++..-......+++
T Consensus      1592 Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~ 1669 (1930)
T KOG0161|consen 1592 LEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRL 1669 (1930)
T ss_pred             hhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33777777777777663   7889999999999999999999999999999888777666665555553333333333

>KOG4673|consensus

Probab=94.11  E-value=12  Score=41.91  Aligned_cols=98  Identities=18%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRR--------KQRLSQVQVRGLIDERADFLAALQD  330 (389)
Q Consensus       259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRr--------k~~~~q~Q~r~l~eekadl~a~lq~  330 (389)
                      +.+.++|.|---++...+.++.....++++|+.|.--+...|-++|-        |+.-...+--+|+.+=.||.-.|+.
T Consensus       519 k~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~  598 (961)
T KOG4673|consen  519 KLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSK  598 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666666666667777777888888888777777766554        3445566777888888888888886


Q ss_pred             HHH-----------HHHHHHHHhhHHHHhhhhhhccc
Q psy10418        331 HQR-----------EVAALKQQLGLAEKENEDLYNSQ  356 (389)
Q Consensus       331 ~~~-----------ei~~L~~~lg~~~k~~~dl~~~~  356 (389)
                      +++           ||..|.+||--|+.-++.+++..
T Consensus       599 ~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v  635 (961)
T KOG4673|consen  599 KEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQV  635 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            654           68888888888888888887753

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=94.07  E-value=12  Score=41.45  Aligned_cols=167  Identities=22%  Similarity=0.312  Sum_probs=94.0

Q ss_pred             HhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy10418        200 HDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKEL  279 (389)
Q Consensus       200 ~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el  279 (389)
                      .---+||.++-.|++=      ...|.++|-.|-..|.+..        .+...=..-|..|++.++..+..|..|+.++
T Consensus       160 sQN~eLK~QL~Elq~~------Fv~ltne~~elt~~lq~Eq--------~~~keL~~kl~~l~~~l~~~~e~le~K~qE~  225 (617)
T PF15070_consen  160 SQNRELKEQLAELQDA------FVKLTNENMELTSALQSEQ--------HVKKELQKKLGELQEKLHNLKEKLELKSQEA  225 (617)
T ss_pred             HhHHHHHHHHHHHHHH------HHHHHHhhhHhhHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3334888888888873      3344566655555554432        0000011234455666666677777777666


Q ss_pred             hhhhhhHHHHHHHHHHHH------HhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh
Q psy10418        280 GYRNSDVDNLKRQIDRLT------STVRELRRKQRLSQVQV-RGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDL  352 (389)
Q Consensus       280 ~~k~~evEaLq~Q~~RL~------~~n~eLRrk~~~~q~Q~-r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl  352 (389)
                      ......-+.+-.++....      ..-.|--||+-+.|+|. -.|-.+-+.--+++.-.++++...+..|..+...|+.|
T Consensus       226 ~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL  305 (617)
T PF15070_consen  226 QSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQL  305 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            666555444444444332      33345567777778774 55555555555566666677777777777777777776


Q ss_pred             hccc-c-ccC---------CCCCCCCCCCCCCCCC-CCCc
Q psy10418        353 YNSQ-E-TTS---------EEERPVQGPLPYEPDD-APWK  380 (389)
Q Consensus       353 ~~~~-~-~~~---------~~~~pvqgp~p~ep~~-~pwk  380 (389)
                      ...- . ..+         +.+--++-|+|.=|.| ..|.
T Consensus       306 ~~qls~~~~~~eg~~~~~~~~~ee~~~~~~~ipEd~es~E  345 (617)
T PF15070_consen  306 QAQLSLMALPGEGDGLESESEEEEAPQPMPSIPEDLESRE  345 (617)
T ss_pred             HHHHHhhcCCCCCcccccccccccccCcCcccccccccHH
Confidence            6432 1 111         1122355678888877 3453

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.06  E-value=3.9  Score=40.11  Aligned_cols=143  Identities=19%  Similarity=0.290  Sum_probs=103.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHH
Q psy10418        193 AELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQ  271 (389)
Q Consensus       193 ~ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRde  271 (389)
                      ..|+.+-.+.+.++..+-.++.++.-| .+|++++.+.+..........               .   +|+.+-|  -++
T Consensus        31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e---------------~---kl~~v~~--~~e   90 (239)
T COG1579          31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE---------------E---KLSAVKD--ERE   90 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------H---HHhcccc--HHH
Confidence            378889999999999999999999766 788999888888877766543               1   1222222  356


Q ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHH
Q psy10418        272 MRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ----VQVRGLIDERADFLAALQDHQREVAALKQQL-GLAE  346 (389)
Q Consensus       272 iRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q----~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l-g~~~  346 (389)
                      ++|..++++.-.....+|..++.+|+.--+.|.-....++    .+-+.+.+.++.+.+.+....++...+..+- -|..
T Consensus        91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~  170 (239)
T COG1579          91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKE  170 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888887777777776665554    4445667777788888888877755555444 4888


Q ss_pred             Hhhhhhhcc
Q psy10418        347 KENEDLYNS  355 (389)
Q Consensus       347 k~~~dl~~~  355 (389)
                      +.+.++...
T Consensus       171 ~l~~ell~~  179 (239)
T COG1579         171 KLDPELLSE  179 (239)
T ss_pred             hcCHHHHHH
Confidence            887777654

>KOG0161|consensus

Probab=93.80  E-value=23  Score=43.96  Aligned_cols=82  Identities=23%  Similarity=0.351  Sum_probs=67.4

Q ss_pred             HHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        261 LRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQ  340 (389)
Q Consensus       261 LKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~  340 (389)
                      ++..+...-..++-+.-+++..+..++.++..+.-|.+...+|-.+++-++-.+..-.-.++.++.+..+...++.+|+.
T Consensus      1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566667888888888888888888888888888888888888888888888888888888888888888888887


Q ss_pred             Hh
Q psy10418        341 QL  342 (389)
Q Consensus       341 ~l  342 (389)
                      +|
T Consensus      1140 ~L 1141 (1930)
T KOG0161|consen 1140 EL 1141 (1930)
T ss_pred             HH
Confidence            77

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.76  E-value=15  Score=41.72  Aligned_cols=238  Identities=21%  Similarity=0.267  Sum_probs=154.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q psy10418         85 EEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNS  164 (389)
Q Consensus        85 e~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~  164 (389)
                      ..+.+.-...+..|-.++..|+.+..+|.+.+.....+.+.. ....+..+.....+|..+|..+-+|--++.||.....
T Consensus       230 q~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~-~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt  308 (775)
T PF10174_consen  230 QTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRL-DKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQT  308 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555677777888888999999988775444331110 0123446777888999999999999999988753332


Q ss_pred             cCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCC
Q psy10418        165 DVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSP  243 (389)
Q Consensus       165 dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~  243 (389)
                                                   +|.+.-+.=++++..+-+|++.|.-. +.-..||.++..|...+..++..-
T Consensus       309 -----------------------------~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l  359 (775)
T PF10174_consen  309 -----------------------------RLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQL  359 (775)
T ss_pred             -----------------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                                         23334444566788888999999655 566778889999999888776211


Q ss_pred             CccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        244 MKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERAD  323 (389)
Q Consensus       244 ~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekad  323 (389)
                      .+.+ .....--.=+..++.-|.+-+|.++.+++++......||+|..++..=-+...+++.|+.. ++=.-+-=.-.+.
T Consensus       360 ~kk~-~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~-~~d~~~~~~~~~~  437 (775)
T PF10174_consen  360 EKKQ-AQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSS-QADSSNEDEALET  437 (775)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHH
Confidence            0000 0001111234455666888999999999999999999999999886555555566666665 4333332333457


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHh-hhhhhc
Q psy10418        324 FLAALQDHQREVAALKQQLGLAEKE-NEDLYN  354 (389)
Q Consensus       324 l~a~lq~~~~ei~~L~~~lg~~~k~-~~dl~~  354 (389)
                      ++-.+.+.++-+..|...-.-++++ .+++..
T Consensus       438 lEea~~eker~~e~l~e~r~~~e~e~~Eele~  469 (775)
T PF10174_consen  438 LEEALREKERLQERLEEQRERAEKERQEELET  469 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888777776432344433 344433

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.55  E-value=9.5  Score=38.75  Aligned_cols=80  Identities=18%  Similarity=0.234  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhhhhhcCCCCCccCCC-CchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHH
Q psy10418        224 RLQEENKKLSKRLEHEGSSPMKSQQL-SPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRE  302 (389)
Q Consensus       224 qLqeeNk~L~~~ls~~~~~~~~~~e~-~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~e  302 (389)
                      .|.+||..|....++-.     +... .-+.+..+|.--=.-.+-=...|.....+|..|+.|....|++|.+|..-..+
T Consensus       171 ~LEeEN~~LR~Ea~~L~-----~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqivd  245 (306)
T PF04849_consen  171 SLEEENEQLRSEASQLK-----TETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVD  245 (306)
T ss_pred             HHHHHHHHHHHHHHHhh-----HHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666665555432     0001 11234455443222223335567777888888888888888888888877777


Q ss_pred             HHHHHH
Q psy10418        303 LRRKQR  308 (389)
Q Consensus       303 LRrk~~  308 (389)
                      |-+|.+
T Consensus       246 lQ~r~k  251 (306)
T PF04849_consen  246 LQQRCK  251 (306)
T ss_pred             HHHHHH
Confidence            655543

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=93.04  E-value=16  Score=39.88  Aligned_cols=86  Identities=19%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVR----ELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA  337 (389)
Q Consensus       262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~----eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~  337 (389)
                      |+-|-+...++.-+..-+...-.+-..|+-|+-+..--|.    |.||.+.=+++.+|.+-.||..|.+--|+.-+.|..
T Consensus       370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~  449 (546)
T PF07888_consen  370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER  449 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444566666677788988888887775    999999999999999999999999999999999999


Q ss_pred             HHHHhh-HHHH
Q psy10418        338 LKQQLG-LAEK  347 (389)
Q Consensus       338 L~~~lg-~~~k  347 (389)
                      |+.+|| +|..
T Consensus       450 Le~r~~~~~~~  460 (546)
T PF07888_consen  450 LEQRLDKVADE  460 (546)
T ss_pred             HHHHHHHhhhh
Confidence            999999 5443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=92.70  E-value=18  Score=39.53  Aligned_cols=68  Identities=26%  Similarity=0.414  Sum_probs=44.4

Q ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhc
Q psy10418        284 SDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYN  354 (389)
Q Consensus       284 ~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg~~~k~~~dl~~  354 (389)
                      ..|+.|+..++++.+...|=|.---.++.|+..   ++.-=..+|.+..++|+.|+.-|-++.++.+.+..
T Consensus       371 ~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k---e~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~  438 (546)
T PF07888_consen  371 DEIEKLSRELQMLEEHLQEERMERQKLEKQLGK---EKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQE  438 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788888888777776666555566666643   22222457778888888888777766666554443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=92.09  E-value=2.3  Score=45.38  Aligned_cols=90  Identities=14%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy10418        259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLID-ERADFLAALQDHQREVAA  337 (389)
Q Consensus       259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~e-ekadl~a~lq~~~~ei~~  337 (389)
                      +.|----|-=+|.||-..-++.....++..|..|.++|.+-|..||.|...+-.|+.+.++ ++.++..+.+....++..
T Consensus        48 kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~  127 (472)
T TIGR03752        48 KALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQ  127 (472)
T ss_pred             HhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3333344555777777777777888889999999999999999999999999999999985 466777666666666666


Q ss_pred             HHHHhh-HHHHh
Q psy10418        338 LKQQLG-LAEKE  348 (389)
Q Consensus       338 L~~~lg-~~~k~  348 (389)
                      ++..|. |..++
T Consensus       128 ~~~~l~~l~~~l  139 (472)
T TIGR03752       128 LQGLIDQLQRRL  139 (472)
T ss_pred             HHHHHHHHHHHH
Confidence            666665 43333

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PRK11637 AmiB activator; Provisional

Probab=91.81  E-value=18  Score=37.53  Aligned_cols=17  Identities=18%  Similarity=0.155  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy10418        139 QKLRGQVDSLRDQMRLK  155 (389)
Q Consensus       139 ~kLKe~VdkQRDeiRak  155 (389)
                      ..++..++.+++.+...
T Consensus       113 ~~~q~~l~~~~~~l~~r  129 (428)
T PRK11637        113 AKLEQQQAAQERLLAAQ  129 (428)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34444444444444443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=91.52  E-value=28  Score=39.29  Aligned_cols=56  Identities=18%  Similarity=0.281  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQ  341 (389)
Q Consensus       286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~  341 (389)
                      +..++.++..+..-..+++.+...+..+++.+-.+...+...+...+.++..++.+
T Consensus       875 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~  930 (1179)
T TIGR02168       875 LEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR  930 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444443333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PHA02562 46 endonuclease subunit; Provisional

Probab=91.08  E-value=23  Score=37.35  Aligned_cols=28  Identities=11%  Similarity=0.357  Sum_probs=22.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10418        193 AELKEILHDRNTLKTRLNELEEERQCFK  220 (389)
Q Consensus       193 ~ELreVL~ERNELKa~vf~LqEEl~~~~  220 (389)
                      ..|.++-.+.+.++.++-.++.++.+|+
T Consensus       255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~~  282 (562)
T PHA02562        255 AALNKLNTAAAKIKSKIEQFQKVIKMYE  282 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4577777888888888888888888886

>TIGR00606 rad50 rad50

Probab=91.01  E-value=40  Score=40.10  Aligned_cols=11  Identities=36%  Similarity=0.196  Sum_probs=6.6

Q ss_pred             HHHhhhhhhcc
Q psy10418        345 AEKENEDLYNS  355 (389)
Q Consensus       345 ~~k~~~dl~~~  355 (389)
                      .+-...||..+
T Consensus      1113 ~~~~~~d~~~~ 1123 (1311)
T TIGR00606      1113 TELVNKDLDIY 1123 (1311)
T ss_pred             HHHHHHHHHHH
Confidence            33347777776

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1029|consensus

Probab=90.65  E-value=34  Score=39.15  Aligned_cols=78  Identities=19%  Similarity=0.288  Sum_probs=48.1

Q ss_pred             HHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        262 RGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQ  341 (389)
Q Consensus       262 Ke~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~  341 (389)
                      -+.+++|||-.++-..+|   ...|--+|+-+.+|+---++|-|+++.+|.=...--.++..|.|....++--+.+++..
T Consensus       474 ie~~~~q~e~~isei~ql---qarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdq  550 (1118)
T KOG1029|consen  474 IEEVTKQRELMISEIDQL---QARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQ  550 (1118)
T ss_pred             HHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            345577777666544444   44455566667777777788888888887655544455556666555555545555544


Q ss_pred             h
Q psy10418        342 L  342 (389)
Q Consensus       342 l  342 (389)
                      |
T Consensus       551 l  551 (1118)
T KOG1029|consen  551 L  551 (1118)
T ss_pred             H
Confidence            4

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=90.65  E-value=9  Score=39.00  Aligned_cols=136  Identities=19%  Similarity=0.295  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHH----------
Q psy10418        204 TLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM----------  272 (389)
Q Consensus       204 ELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdei----------  272 (389)
                      .|...--.|.-|+.+| -.+..|+++|+.|....-..+..--+--+.++.   .+|++|.. +.+..+.|          
T Consensus        31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN---~LlKkl~~-l~keKe~L~~~~e~EEE~  106 (310)
T PF09755_consen   31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISN---TLLKKLQQ-LKKEKETLALKYEQEEEF  106 (310)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            3444444555566655 356777777777766544322000000012222   56666654 33333333          


Q ss_pred             -----HHhhhhhhhhhhhHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy10418        273 -----RLKEKELGYRNSDVDNLKR-----QIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE-VAALKQQ  341 (389)
Q Consensus       273 -----Rak~~el~~k~~evEaLq~-----Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e-i~~L~~~  341 (389)
                           -.|-.+|..-..++|+.-+     .+.+|++.-..|+......+..+-.|..+|.|++-.|..-|.. +..|.++
T Consensus       107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq  186 (310)
T PF09755_consen  107 LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQ  186 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence                 2222333333334444322     2788889888999888899999999999999999999765555 7778888


Q ss_pred             hh
Q psy10418        342 LG  343 (389)
Q Consensus       342 lg  343 (389)
                      ..
T Consensus       187 m~  188 (310)
T PF09755_consen  187 MD  188 (310)
T ss_pred             HH
Confidence            86

>KOG0933|consensus

Probab=89.20  E-value=52  Score=38.61  Aligned_cols=198  Identities=18%  Similarity=0.266  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccC
Q psy10418         87 IEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDV  166 (389)
Q Consensus        87 ~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~~k~~dv  166 (389)
                      .+.+.-++.+.|-.++..++.++-+..+.+.-...+        ...+..=+..+...+..+|.-+++|+.+....-.+.
T Consensus       288 rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~t--------l~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~  359 (1174)
T KOG0933|consen  288 RDAEMGGEVKALEDKLDSLQNEITREETSLNLKKET--------LNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGY  359 (1174)
T ss_pred             HHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhH
Confidence            344566677888888888888888877777644332        233555566666777777777777776654322221


Q ss_pred             CCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh----hhhhcCCC
Q psy10418        167 DNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSK----RLEHEGSS  242 (389)
Q Consensus       167 e~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~----~ls~~~~~  242 (389)
                      +.++.+                                              ++..+-+-+.-..+..    -+|+..+ 
T Consensus       360 ~~~ke~----------------------------------------------~~~~s~~~e~~e~~~eslt~G~Ss~~~-  392 (1174)
T KOG0933|consen  360 EKLKEA----------------------------------------------FQEDSKLLEKAEELVESLTAGLSSNED-  392 (1174)
T ss_pred             HHHHHH----------------------------------------------HHHHHHHHHHHHHHHHHHhcccccCcc-
Confidence            111111                                              0000111111112222    2222210 


Q ss_pred             CCccCCCCch-----------hhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHH-
Q psy10418        243 PMKSQQLSPE-----------IDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLS-  310 (389)
Q Consensus       243 ~~~~~e~~~~-----------~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~-  310 (389)
                          .+.+-+           .-..-+...+-....-|.+|+-+.-++.+.+.+-.....-++-+.+-..+|+++...+ 
T Consensus       393 ----~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~  468 (1174)
T KOG0933|consen  393 ----EEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLG  468 (1174)
T ss_pred             ----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence                001110           0112233444445555667777776766666654444444444444444444443332 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        311 --QVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       311 --q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                        -.|...|-+.++.+-........+..+|..+|+
T Consensus       469 ~~~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~  503 (1174)
T KOG0933|consen  469 YKIGQEEALKQRRAKLHEDIGRLKDELDRLLARLA  503 (1174)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence              356778888888888888888888888887775

>KOG1853|consensus

Probab=89.13  E-value=23  Score=35.57  Aligned_cols=39  Identities=13%  Similarity=0.258  Sum_probs=24.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHh
Q psy10418        195 LKEILHDRNTLKTRLNELEEER-----QCFKMVNRLQEENKKLS  233 (389)
Q Consensus       195 LreVL~ERNELKa~vf~LqEEl-----~~~~~V~qLqeeNk~L~  233 (389)
                      +|++..+-|-|++.+--+.|-+     +.|+++++|.-+|..++
T Consensus        61 nrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~  104 (333)
T KOG1853|consen   61 NRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTH  104 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555556666665555554     37888888877765554

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=88.94  E-value=30  Score=35.47  Aligned_cols=137  Identities=23%  Similarity=0.259  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhhhhhhcC--CCCCccCCCCchh--hHHHHHHHHHHHHHhHHHHHHhhhh
Q psy10418        204 TLKTRLNELEEERQCF-KMVNRLQEENKKLSKRLEHEG--SSPMKSQQLSPEI--DISALQKLRGQVDSLRDQMRLKEKE  278 (389)
Q Consensus       204 ELKa~vf~LqEEl~~~-~~V~qLqeeNk~L~~~ls~~~--~~~~~~~e~~~~~--d~~vm~kLKe~VdkQRdeiRak~~e  278 (389)
                      +.+.+..-|+.|+..+ +.+.-++.+++.|...+..-.  ..+.-+..+..++  =..=|.+++..+..---++++.--|
T Consensus        76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDE  155 (319)
T PF09789_consen   76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDE  155 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555556667777544 455666778888888777433  1111122222233  3344678888888888888888888


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQ---VRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q---~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      ......|-++.+.-++||   |.||=+-++--..-   +-+||-|=-=+...+...+.|...+++-++
T Consensus       156 keEl~~ERD~yk~K~~RL---N~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~  220 (319)
T PF09789_consen  156 KEELVTERDAYKCKAHRL---NHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN  220 (319)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888999999999999   88886665543333   788999999999999999999998888775

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=88.87  E-value=55  Score=38.51  Aligned_cols=26  Identities=42%  Similarity=0.630  Sum_probs=14.6

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10418        194 ELKEILHDRNTLKTRLNELEEERQCF  219 (389)
Q Consensus       194 ELreVL~ERNELKa~vf~LqEEl~~~  219 (389)
                      ++.++..+++++..++..+++++..+
T Consensus       745 ~~~~~~~~~~~~~~~~~~~~~~l~~~  770 (1163)
T COG1196         745 ELEELEEELEELQERLEELEEELESL  770 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555666666666666544

>PRK09039 hypothetical protein; Validated

Probab=88.75  E-value=20  Score=36.54  Aligned_cols=29  Identities=17%  Similarity=0.208  Sum_probs=11.0

Q ss_pred             HHHHhhhhhhhhhhhHHHHHHHHHHHHHh
Q psy10418        271 QMRLKEKELGYRNSDVDNLKRQIDRLTST  299 (389)
Q Consensus       271 eiRak~~el~~k~~evEaLq~Q~~RL~~~  299 (389)
                      +|.......+..+.+|..|+.||+.|...
T Consensus       124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Q  152 (343)
T PRK09039        124 ELDSEKQVSARALAQVELLNQQIAALRRQ  152 (343)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333

>PF15294 Leu_zip: Leucine zipper

Probab=88.63  E-value=8  Score=38.81  Aligned_cols=54  Identities=26%  Similarity=0.388  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        286 VDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALK  339 (389)
Q Consensus       286 vEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~  339 (389)
                      ++.|+.-++||..=|.-|+-|+.-++.|.-...++|..++++|.+.+...+...
T Consensus       127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~  180 (278)
T PF15294_consen  127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK  180 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            577999999999999999999999999999999999999999998888554444

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=88.57  E-value=14  Score=32.87  Aligned_cols=93  Identities=22%  Similarity=0.347  Sum_probs=75.0

Q ss_pred             chhhHHHHHHHHHHHHHhHHHHHHh---hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        251 PEIDISALQKLRGQVDSLRDQMRLK---EKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAA  327 (389)
Q Consensus       251 ~~~d~~vm~kLKe~VdkQRdeiRak---~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~  327 (389)
                      +.....|+.-+-+.+...+......   ...+.....|++.|+..++||..-++++-|+...++...+++-..-..+.+.
T Consensus        30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~  109 (151)
T PF11559_consen   30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAK  109 (151)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457778888777775443333332   3455666778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy10418        328 LQDHQREVAALKQQLG  343 (389)
Q Consensus       328 lq~~~~ei~~L~~~lg  343 (389)
                      +.....++..+...+.
T Consensus       110 ~k~~kee~~klk~~~~  125 (151)
T PF11559_consen  110 LKQEKEELQKLKNQLQ  125 (151)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999888888886664

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.44  E-value=5.2  Score=40.31  Aligned_cols=123  Identities=21%  Similarity=0.311  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhh
Q psy10418        203 NTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYR  282 (389)
Q Consensus       203 NELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k  282 (389)
                      ..|+.++..++.|.+.|..          ....++...  +  ..+. ...-..-+.+|+.-......+|+..+.+-...
T Consensus        12 ~~l~~~~~~~~~E~~~Y~~----------fL~~l~~~~--~--~~~~-~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l   76 (314)
T PF04111_consen   12 EQLDKQLEQAEKERDTYQE----------FLKKLEEES--D--SEED-IEELEEELEKLEQEEEELLQELEELEKEREEL   76 (314)
T ss_dssp             --------------------------------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH----------HHHHHHhcC--C--cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577788888888888864          111111100  0  0000 11123456667777788888888888888888


Q ss_pred             hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        283 NSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQ  340 (389)
Q Consensus       283 ~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~  340 (389)
                      ..++.+|+.+...|...-...-+-....+.++..+.+++..+.+++.-....+..|++
T Consensus        77 ~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   77 DQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999988888888888889999999999999999988888888888874

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=88.41  E-value=4.9  Score=32.09  Aligned_cols=59  Identities=24%  Similarity=0.400  Sum_probs=53.0

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      |+.+|...+++|+.....|++-...+..|..++..+|+.|.......-.-|.+|=.+|-
T Consensus         1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk   59 (65)
T TIGR02449         1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK   59 (65)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            46789999999999999999999999999999999999999998888888887766663

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=88.20  E-value=47  Score=36.85  Aligned_cols=53  Identities=28%  Similarity=0.312  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        291 RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       291 ~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      .-+.|...-|.+|...+.=+|.-.-.|..+++++.-+||.-++-...|..+||
T Consensus       153 ~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~  205 (617)
T PF15070_consen  153 ATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLG  205 (617)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence            34778888999999999999998888899999998888887777777766666

>KOG0996|consensus

Probab=87.44  E-value=71  Score=38.07  Aligned_cols=134  Identities=25%  Similarity=0.319  Sum_probs=92.1

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHH
Q psy10418        194 ELKEILHDRNTLKTRLNELEEERQCFK-MVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM  272 (389)
Q Consensus       194 ELreVL~ERNELKa~vf~LqEEl~~~~-~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdei  272 (389)
                      +|-..+..-|+.++.+.+.+.||..|. +-..+.-....|.+.|.....+        -......+..++.++++-.+++
T Consensus       487 el~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~--------~~e~~~~l~~~k~~l~~~k~e~  558 (1293)
T KOG0996|consen  487 ELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSES--------LKEKKTELDDLKEELPSLKQEL  558 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhhHHHHH
Confidence            677778888999999999999998764 3233333334444444433211        2346678899999999999999


Q ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Q psy10418        273 RLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE--VAALKQQLG  343 (389)
Q Consensus       273 Rak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e--i~~L~~~lg  343 (389)
                      +-+..+|.....+...++.|+.++.-=..|++--....        .-+....++|...+..  |...-+|||
T Consensus       559 ~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~--------~s~~kVl~al~r~kesG~i~Gf~GRLG  623 (1293)
T KOG0996|consen  559 KEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSS--------RSRNKVLDALMRLKESGRIPGFYGRLG  623 (1293)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHHHHcCCCCccccccc
Confidence            99999999999999999998888776666655433332        3344455555544433  555567777

>PRK04863 mukB cell division protein MukB; Provisional

Probab=87.00  E-value=43  Score=40.80  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Q psy10418        192 TAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE  228 (389)
Q Consensus       192 l~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqee  228 (389)
                      +.++.+++   .+++.++-.|+++..-+.....+..+
T Consensus       309 L~rI~diL---~ELe~rL~kLEkQaEkA~kyleL~ee  342 (1486)
T PRK04863        309 LVEMAREL---AELNEAESDLEQDYQAASDHLNLVQT  342 (1486)
T ss_pred             HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555665   67888888888888777665555553

>KOG4674|consensus

Probab=85.69  E-value=1e+02  Score=38.31  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy10418         81 EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELG  160 (389)
Q Consensus        81 ~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm~kLKe~VdkQRDeiRake~eL~  160 (389)
                      +..+..++..|..=.+.|+..+..+.+-+..+...+......        -+....-+..++..++..++.|--.+..+.
T Consensus       804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~--------i~~~~~~~~~~~~~l~~~~~~~~~le~k~~  875 (1822)
T KOG4674|consen  804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNL--------VDELESELKSLLTSLDSVSTNIAKLEIKLS  875 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555555555555555555544444444333322111        123445567778888999998887766655


Q ss_pred             cccccCCCCCCccc--cc-ccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhh
Q psy10418        161 YRNSDVDNSDIPDL--SN-KAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMV  222 (389)
Q Consensus       161 ~k~~dve~l~~~~L--~~-~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~LqEEl~~~~~V  222 (389)
                      .-+..+.....+-+  .. ....|.      -+-...||..+-+-+-||.+|-.-..++..|+..
T Consensus       876 eL~k~l~~~~~~~~~l~~~~~~~d~------~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~  934 (1822)
T KOG4674|consen  876 ELEKRLKSAKTQLLNLDSKSSNEDA------TILEDTLRKELEEITDLKEELTDALSQIREYQEE  934 (1822)
T ss_pred             HHHHHHHHhHHHHhhccccchhhhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444332222211  00 001111      0111239999999999999999988888887753

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=84.97  E-value=37  Score=32.45  Aligned_cols=89  Identities=15%  Similarity=0.349  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        255 ISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQRE  334 (389)
Q Consensus       255 ~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~e  334 (389)
                      ..-...++..+...++.+......+......+++.+..+..+...+...+........-.....+...+....+......
T Consensus        55 ~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (302)
T PF10186_consen   55 LLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQR  134 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666666666666666666666666666666666655533333444444444455555555555


Q ss_pred             HHHHHHHhh
Q psy10418        335 VAALKQQLG  343 (389)
Q Consensus       335 i~~L~~~lg  343 (389)
                      +..+...+.
T Consensus       135 l~~l~~~l~  143 (302)
T PF10186_consen  135 LSQLQSQLA  143 (302)
T ss_pred             HHHHHHHHH
Confidence            555544444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG0995|consensus

Probab=83.88  E-value=23  Score=38.87  Aligned_cols=69  Identities=25%  Similarity=0.325  Sum_probs=48.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        275 KEKELGYRNSDVDNLKRQIDRLTSTVRELR---RKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       275 k~~el~~k~~evEaLq~Q~~RL~~~n~eLR---rk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      -...|...+++++.--+++++|...|.+|+   .++++.-++++-..-||-.+...|-+.+-++..|++.++
T Consensus       292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw  363 (581)
T KOG0995|consen  292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW  363 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555555554   356778888888889999999999999999999998886

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=83.23  E-value=44  Score=32.01  Aligned_cols=109  Identities=24%  Similarity=0.344  Sum_probs=73.3

Q ss_pred             HhhHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhh
Q psy10418        200 HDRNTLKTRLNELEEERQ-CFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKE  278 (389)
Q Consensus       200 ~ERNELKa~vf~LqEEl~-~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~e  278 (389)
                      -+.+-|-++.-.++.|-. ....|.-||++|.++......-..   .+.+-+.  ...   .|+-.|-.=-.-|.-++..
T Consensus        81 E~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~---~~~eL~~--~~~---~Lq~Ql~~~e~l~~~~da~  152 (193)
T PF14662_consen   81 EENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKK---RSKELAT--EKA---TLQRQLCEFESLICQRDAI  152 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH---HHHHHHH--hhH---HHHHHHHHHHHHHHHHHHH
Confidence            356667777777777775 447788888999888876664320   0000000  111   1222222222345666778


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy10418        279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRG  316 (389)
Q Consensus       279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~  316 (389)
                      +..++..|+.|-..++....+..+||-..+.++.|+..
T Consensus       153 l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql~q  190 (193)
T PF14662_consen  153 LSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQLSQ  190 (193)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999998854

>TIGR00606 rad50 rad50

Probab=82.72  E-value=1.1e+02  Score=36.42  Aligned_cols=97  Identities=13%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhh-------hhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHH
Q psy10418        194 ELKEILHDRNTLKTRLNELEEERQCF-------KMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVD  266 (389)
Q Consensus       194 ELreVL~ERNELKa~vf~LqEEl~~~-------~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~Vd  266 (389)
                      +++++-.+-.++.+.+-.+..++...       .-|.++..+...+...+..-... ..  ...+  + .-+..|..-+.
T Consensus       759 ~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~-l~--~~~~--~-~s~~ele~ei~  832 (1311)
T TIGR00606       759 DIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK-LQ--GSDL--D-RTVQQVNQEKQ  832 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc--cccc--c-CCHHHHHHHHH
Confidence            45555555555566666666666433       22344455555555555532200 00  0000  1 13344555556


Q ss_pred             HhHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q psy10418        267 SLRDQMRLKEKELGYRNSDVDNLKRQIDRL  296 (389)
Q Consensus       267 kQRdeiRak~~el~~k~~evEaLq~Q~~RL  296 (389)
                      .-..+|++...++.....+.+.++.++.+|
T Consensus       833 ~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       833 EKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666566666666666666666666

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0995|consensus

Probab=82.41  E-value=84  Score=34.66  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=28.3

Q ss_pred             cccHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10418        189 RFTTAELKEILHDRNTLKTRLNELEEERQCF  219 (389)
Q Consensus       189 rFTl~ELreVL~ERNELKa~vf~LqEEl~~~  219 (389)
                      .||..+++.+=+|||+|+-.|..++=+++-+
T Consensus       328 ~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l  358 (581)
T KOG0995|consen  328 GISGEDVERMNLERNKLKRELNKIQSELDRL  358 (581)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999888754

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=82.25  E-value=93  Score=35.05  Aligned_cols=222  Identities=22%  Similarity=0.305  Sum_probs=128.4

Q ss_pred             hHHHhhhhhhHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCccCCCCchHHHHHH
Q psy10418         64 KLQELGDHISKLEHEKL-----EREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISVL  138 (389)
Q Consensus        64 ~~e~L~~~~~qle~Ek~-----~~Ele~~Ed~~r~E~~eL~~~V~~LqeeN~~L~~~Ls~~~~~~~~~~~~~~e~er~vm  138 (389)
                      ....|..++.+|+.|-+     ++||-.....+....+.|...+.+++-+|..|...+.....        +.+.|++-|
T Consensus       419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~--------aRq~DKq~l  490 (697)
T PF09726_consen  419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQ--------ARQQDKQSL  490 (697)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence            34456666666655522     66666665556666677888888888888888888876543        234588888


Q ss_pred             HHHHHHHHHHHHHHHHH---Hhhhhc----ccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHH
Q psy10418        139 QKLRGQVDSLRDQMRLK---EKELGY----RNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNE  211 (389)
Q Consensus       139 ~kLKe~VdkQRDeiRak---e~eL~~----k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~  211 (389)
                      .-|...+   ++|.|++   |.+|..    +-.+.+....+ +.           .+.-|..|--+              
T Consensus       491 ~~LEkrL---~eE~~~R~~lEkQL~eErk~r~~ee~~aar~-~~-----------~~~~~r~e~~e--------------  541 (697)
T PF09726_consen  491 QQLEKRL---AEERRQRASLEKQLQEERKARKEEEEKAARA-LA-----------QAQATRQECAE--------------  541 (697)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhc-cc-----------cchhccchhHH--------------
Confidence            8776653   4444432   444421    11111100000 00           01111111111              


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHH
Q psy10418        212 LEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKR  291 (389)
Q Consensus       212 LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~  291 (389)
                           .|-++..+|..|.++|...|..++               +-+..|..-+-..|.-=+.-..+.....+-+-|||+
T Consensus       542 -----~~r~r~~~lE~E~~~lr~elk~ke---------------e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd  601 (697)
T PF09726_consen  542 -----SCRQRRRQLESELKKLRRELKQKE---------------EQIRELESELQELRKYEKESEKDTEVLMSALSAMQD  601 (697)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence                 345667788889999998888774               222222222211111101122344444444557888


Q ss_pred             HHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        292 QIDRLTS-TVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       292 Q~~RL~~-~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      -...|-+ .-+|-|=|+.++.+=|.+ -.+-..++.++..+++||..|++++.
T Consensus       602 k~~~LE~sLsaEtriKldLfsaLg~a-krq~ei~~~~~~~~d~ei~~lk~ki~  653 (697)
T PF09726_consen  602 KNQHLENSLSAETRIKLDLFSALGDA-KRQLEIAQGQLRKKDKEIEELKAKIA  653 (697)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777765 457889999998875543 34455677889999999999999886

; GO: 0016021 integral to membrane

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=82.11  E-value=70  Score=33.48  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc---ccccCCCCCCcccccccccCCCCCCCCcccHHHHHHHHHhhHHHHHHHHHHH
Q psy10418        137 VLQKLRGQVDSLRDQMRLKEKELGY---RNSDVDNSDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELE  213 (389)
Q Consensus       137 vm~kLKe~VdkQRDeiRake~eL~~---k~~dve~l~~~~L~~~~~~d~~dpnrPrFTl~ELreVL~ERNELKa~vf~Lq  213 (389)
                      ...=|..++++.++++...+..|..   ++..+                 +|...-+....+.++-++.+..++++..++
T Consensus       162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~-----------------~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~  224 (498)
T TIGR03007       162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI-----------------LPDQEGDYYSEISEAQEELEAARLELNEAI  224 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----------------CccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556677777777777766642   22111                 122222344566666666666666666555


Q ss_pred             HHHHhhh
Q psy10418        214 EERQCFK  220 (389)
Q Consensus       214 EEl~~~~  220 (389)
                      .-++.++
T Consensus       225 a~~~~l~  231 (498)
T TIGR03007       225 AQRDALK  231 (498)
T ss_pred             HHHHHHH
Confidence            5555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK02224 chromosome segregation protein; Provisional

Probab=81.83  E-value=96  Score=34.89  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=41.0

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHHHH
Q psy10418        194 ELKEILHDRNTLKTRLNELEEERQCFKM-VNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM  272 (389)
Q Consensus       194 ELreVL~ERNELKa~vf~LqEEl~~~~~-V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRdei  272 (389)
                      .|.++-.+.++++.++-.++..+.+|+. +..+.       ..+....| |.=....+.+....++..++..+++-++.+
T Consensus       413 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-------~~l~~~~C-p~C~r~~~~~~~~~~~~~~~~~~~~~~~~~  484 (880)
T PRK02224        413 FLEELREERDELREREAELEATLRTARERVEEAE-------ALLEAGKC-PECGQPVEGSPHVETIEEDRERVEELEAEL  484 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcccC-CCCCCcCCCcchhhhHHHHHHHHHHHHHHH
Confidence            4555556666777777777776666652 22221       11111111 110001111222366777777777655555


Q ss_pred             HHhhhhhhhhhhhHH
Q psy10418        273 RLKEKELGYRNSDVD  287 (389)
Q Consensus       273 Rak~~el~~k~~evE  287 (389)
                      .....++......++
T Consensus       485 ~~le~~l~~~~~~~e  499 (880)
T PRK02224        485 EDLEEEVEEVEERLE  499 (880)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555554444443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=81.80  E-value=19  Score=28.86  Aligned_cols=57  Identities=26%  Similarity=0.377  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHh
Q psy10418        285 DVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG-LAEKE  348 (389)
Q Consensus       285 evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg-~~~k~  348 (389)
                      .+.+|+..++++.       ||..+.+.=.++|..||.-+..+|.....++..|+.++. +++++
T Consensus         6 ~~~~Lr~rLd~~~-------rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el   63 (69)
T PF14197_consen    6 EIATLRNRLDSLT-------RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL   63 (69)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777777665       566888999999999999999999999999999999998 55543

>KOG0612|consensus

Probab=81.24  E-value=1.3e+02  Score=36.09  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=17.2

Q ss_pred             CcccHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10418        188 PRFTTAELKEILHDRNTLKTRLNELEEERQ  217 (389)
Q Consensus       188 PrFTl~ELreVL~ERNELKa~vf~LqEEl~  217 (389)
                      ++++++.+.+   +.+.+-..+-.+++...
T Consensus       572 ~~~~iq~~~e---~~~~~~d~l~~le~~k~  598 (1317)
T KOG0612|consen  572 LSKQIQQELE---ENRDLEDKLSLLEESKS  598 (1317)
T ss_pred             hhHHHHHHhh---ccccHHHHHHHHHHHHH
Confidence            3455554444   77777777777777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 3e-12
 Identities = 77/476 (16%), Positives = 145/476 (30%), Gaps = 141/476 (29%)

Query: 3   DEYSSTLTVIDVFDIASEI--GKEFEKIIDQYGPDAVTSIMPKVIVALEHLECLASKNER 60
           D +       DV D+   I   +E + II     DAV+         L     L SK E 
Sbjct: 27  DAFVDNFDCKDVQDMPKSILSKEEIDHIIMS--KDAVSGT-------LRLFWTLLSKQEE 77

Query: 61  ENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQ-------LVEMVNRLQEENKKLS 113
              K  E          E L    + +    K E +Q        +E  +RL  +N+  +
Sbjct: 78  MVQKFVE----------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 114 K----RLEHEGSSPMKSQQLSPEIDISVLQKLRG---QV---DSLRDQMRLKEKE----- 158
           K    RL+          +L P  ++ ++  + G        D         + +     
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 159 --LGYRNSDVDNSDI---------PDLSNKAVYDLDDPNRPRFTTAELKEILH------- 200
             L   NS     ++         P+ ++++ +  +   R     AEL+ +L        
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 201 --------DRNTLK-----------TR----LNELEEERQCFKMVNRLQ-----EENKKL 232
                   +                TR     + L         ++        +E K L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 233 -SKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQM-RLKEKELGYRNSDVDNLK 290
             K L+       + Q L  E+  +  ++L    +S+RD +         +++ + D L 
Sbjct: 307 LLKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNCDKLT 356

Query: 291 RQIDRLTSTVRELRRKQRLSQVQVRGLIDERADF----------LAAL-----QDHQREV 335
             I+   S++        L   + R + D  + F          L+ +     +     V
Sbjct: 357 TIIE---SSLNV------LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 336 AALKQQLGLAEKENE-------DLYNSQETTSEEERPV--------QGPLPYEPDD 376
                +  L EK+ +        +Y   +   E E  +          P  ++ DD
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 9e-11
 Identities = 45/330 (13%), Positives = 87/330 (26%), Gaps = 117/330 (35%)

Query: 151 QMRLKEKELGYRNSDVDNSDIPDLSNKAVYDLD-----DPNRPRFTTAELKEILHDRNT- 204
            M  +  E  Y+  D+    +    +  V + D     D  +   +  E+  I+  ++  
Sbjct: 6   HMDFETGEHQYQYKDI----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61

Query: 205 ------------------------------------LKTRLNELEEERQCF-KMVNRLQE 227
                                               +KT   +     + + +  +RL  
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 228 ENKKLSK----RLEHEGSSPMKSQQLSPEIDISALQKLRG---QV---DSLRDQMRLKEK 277
           +N+  +K    RL+          +L P  ++  +  + G        D         + 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 278 E-------LGYRNSDVD------NLKRQID---------------RLTSTVRELRRKQRL 309
           +       L   NS          L  QID               R+ S   ELRR  + 
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 310 SQ---------------------VQVRGLIDER----ADFLAALQDHQREVAALKQQLGL 344
                                  +  + L+  R     DFL+A       ++     + L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTHISLDHHSMTL 298

Query: 345 AEKENEDLYNSQETTSEEERPVQ----GPL 370
              E + L         ++ P +     P 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 57/318 (17%), Positives = 121/318 (38%), Gaps = 38/318 (11%)

Query: 54   LASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWK-----EETQQLVEMVNRLQEE 108
            L  K + E     E  +   +L  +K E E    E   +     E +QQL     ++Q++
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 109  NKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 168
               L ++LE E ++  K Q               G++  + D + + E +      +   
Sbjct: 957  MLDLEEQLEEEEAARQKLQL--------EKVTADGKIKKMEDDILIMEDQNNKLTKERKL 1008

Query: 169  SDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228
             +  +  +    +L +         + K +   +N  ++ ++ELE   +      + ++E
Sbjct: 1009 LE--ERVSDLTTNLAE------EEEKAKNLTKLKNKHESMISELEVRLK---KEEKSRQE 1057

Query: 229  NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 288
             +K+ ++LE E S   +            + +L+ Q+  L+ Q+  KE+EL    + +++
Sbjct: 1058 LEKIKRKLEGESSDLHEQ-----------IAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 289  LKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL---GLA 345
               Q +     +REL       Q  +      R       +D   E+ ALK +L      
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166

Query: 346  EKENEDLYNSQETTSEEE 363
                ++L  S     +++
Sbjct: 1167 TATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 59/324 (18%), Positives = 129/324 (39%), Gaps = 38/324 (11%)

Query: 49   EHLECLASKNERENTKLQELGDHISKLEHEKLEREVEEIEESWKEETQQLVEMVNRLQEE 108
            E L+    + ++   +L+EL    ++L  EK    ++E  ++  E   +  EM  RL  +
Sbjct: 864  EELQRTKERQQKAEAELKELEQKHTQLCEEK--NLLQEKLQAETELYAEAEEMRVRLAAK 921

Query: 109  NKKLSKRLEHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 168
             ++L + L HE  + ++ ++   +   +  +K++ Q+  L +Q+  +E        +   
Sbjct: 922  KQELEEIL-HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980

Query: 169  SDIPDLSNKAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEE 228
            +D                + +    ++  +    N L      LEE      +   L EE
Sbjct: 981  AD---------------GKIKKMEDDILIMEDQNNKLTKERKLLEERVS--DLTTNLAEE 1023

Query: 229  NKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDN 288
             +K    L    +   +S     E+ +   +K R +++ ++ ++  +  +L  +   +  
Sbjct: 1024 EEKAKN-LTKLKNK-HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ---IAE 1078

Query: 289  LKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERA----------DFLAALQDHQREVAAL 338
            L+ QI  L +   +L +K+   Q  +  L DE +          +  + + D Q ++ + 
Sbjct: 1079 LQAQIAELKA---QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESE 1135

Query: 339  KQQLGLAEKENEDLYNSQETTSEE 362
            K     AEK+  DL    E    E
Sbjct: 1136 KAARNKAEKQKRDLSEELEALKTE 1159

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 26/215 (12%), Positives = 75/215 (34%), Gaps = 51/215 (23%)

Query: 59   ERENTKLQELGDHISKLEHE--KLEREVEEIEESWKEETQQLVEMVNRLQEENKKLSKRL 116
             R   + ++L      LE++  +L+R+++E  + +K   +++  +      E +KL   +
Sbjct: 913  ARSVERYKKL---HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 117  EHEGSSPMKSQQLSPEIDISVLQKLRGQVDSLRDQMRLKEKELGYRNSDVDNSDIPDLSN 176
            E                    L+    +  +  +++   ++E+     ++  +       
Sbjct: 970  ER-------------------LRMSEEEAKNATNRVLSLQEEIAKLRKELHQT------- 1003

Query: 177  KAVYDLDDPNRPRFTTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRL 236
                             E K I    +  K    +L  E +  +    L+ E ++L++R+
Sbjct: 1004 ---------------QTEKKTIEEWADKYKHETEQLVSELK--EQNTLLKTEKEELNRRI 1046

Query: 237  EHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRDQ 271
              +     ++ +          ++L   ++  R +
Sbjct: 1047 HDQAKEITETMEKKLV---EETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 21/165 (12%), Positives = 62/165 (37%), Gaps = 14/165 (8%)

Query: 194  ELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEI 253
            +LK         K     LE +    ++  ++ E+NK+    LE   +  +     + ++
Sbjct: 908  KLKIEARSVERYKKLHIGLENKIM--QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965

Query: 254  --DISALQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQ 311
              D+  L+    +  +  +++   ++E+         L++++ +  +  + +       +
Sbjct: 966  RSDVERLRMSEEEAKNATNRVLSLQEEI-------AKLRKELHQTQTEKKTIEEWADKYK 1018

Query: 312  VQVRGLIDERADFLAALQDHQREVAALKQQLGLAEKENEDLYNSQ 356
             +   L+ E  +    L   + E   L +++    KE  +    +
Sbjct: 1019 HETEQLVSELKEQNTLL---KTEKEELNRRIHDQAKEITETMEKK 1060

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
1yhn_B	65	RILP, RAB interacting lysosomal protein; protein t	99.67
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	92.71
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	90.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.1
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.42
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	83.22
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	82.33
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	80.16

>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1

Probab=99.67  E-value=5.6e-17  Score=124.01  Aligned_cols=63  Identities=27%  Similarity=0.428  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhhcCCCCCccCCCCchhhHHHHHHHHHHHHHhHH
Q psy10418        191 TTAELKEILHDRNTLKTRLNELEEERQCFKMVNRLQEENKKLSKRLEHEGSSPMKSQQLSPEIDISALQKLRGQVDSLRD  270 (389)
Q Consensus       191 Tl~ELreVL~ERNELKa~vf~LqEEl~~~~~V~qLqeeNk~L~~~ls~~~~~~~~~~e~~~~~d~~vm~kLKe~VdkQRd  270 (389)
                      |++|||+|||||||||++||+|+|||+||++      +               ..+.+++|.   .+|..+|.+|.|||.
T Consensus         1 T~~Elr~iLqERNELKa~vf~lqeEL~yY~~------e---------------~l~~~~~p~---~ll~a~k~aikkqr~   56 (65)
T 1yhn_B            1 SREEFEQILQERNELKAKVFLLKEELAYFQR------E---------------LLTDHRVPS---LLLEAMKVAVRKQRK   56 (65)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---------------HSSTTCCCH---HHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------c---------------cCCcccccH---HHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999997      1               224557787   999999999999999


Q ss_pred             HHHHhhh
Q psy10418        271 QMRLKEK  277 (389)
Q Consensus       271 eiRak~~  277 (389)
                      .|+||+-
T Consensus        57 ~ikakml   63 (65)
T 1yhn_B           57 KIKAKML   63 (65)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999973

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=92.71  E-value=0.11  Score=58.67  Aligned_cols=70  Identities=23%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10418        273 RLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQL  342 (389)
Q Consensus       273 Rak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~l  342 (389)
                      +....++......++.++.++..+.+-..+|..+...+..++...-.++..+..+..+.++++..|+.++
T Consensus      1091 ~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~I 1160 (1184)
T 1i84_S         1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTEL 1160 (1184)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333334444444445555555555544

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=90.93  E-value=0.45  Score=53.62  Aligned_cols=9  Identities=33%  Similarity=0.305  Sum_probs=3.3

Q ss_pred             HHHHHHHHH
Q psy10418        101 MVNRLQEEN  109 (389)
Q Consensus       101 ~V~~LqeeN  109 (389)
                      ++..|+.+.
T Consensus       886 ~l~~Le~e~  894 (1184)
T 1i84_S          886 KHTQLCEEK  894 (1184)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            333333333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.10  E-value=3.7  Score=41.67  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQR  333 (389)
Q Consensus       259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~  333 (389)
                      .+++.++.+-+..+.....++.....++++.+.+.+.+.+-..+++++..-.+.++..+.++-+.+.++++..+.
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            456666666666777777777777777888888888888888888888877777777777666666555555443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.42  E-value=3.6  Score=35.72  Aligned_cols=65  Identities=14%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10418        279 LGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAALKQQLG  343 (389)
Q Consensus       279 l~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~L~~~lg  343 (389)
                      +-....+++.|..+++.+.+-..+|.|.....+.+...+-.+..++...+...++++..|...++
T Consensus        70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~  134 (138)
T 3hnw_A           70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN  134 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445566666666666666666666666666666666666666666666666666655544

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=83.22  E-value=17  Score=29.53  Aligned_cols=83  Identities=18%  Similarity=0.189  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10418        258 LQKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGLIDERADFLAALQDHQREVAA  337 (389)
Q Consensus       258 m~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l~eekadl~a~lq~~~~ei~~  337 (389)
                      |..|+.-=.+.-.+|...+++=.....+++++..+..+|-.-....-|.++..+.|+-.+.+++.-+.+++.-.+..+..
T Consensus        13 L~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdk   92 (96)
T 3q8t_A           13 LKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDK   92 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556667777777777788899999999999999999999999999999999999999999999988888887


Q ss_pred             HHH
Q psy10418        338 LKQ  340 (389)
Q Consensus       338 L~~  340 (389)
                      |++
T Consensus        93 L~K   95 (96)
T 3q8t_A           93 LKK   95 (96)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            764

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=82.33  E-value=18  Score=31.33  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy10418        259 QKLRGQVDSLRDQMRLKEKELGYRNSDVDNLKRQIDRLTSTVRELRRKQRLSQVQVRGL  317 (389)
Q Consensus       259 ~kLKe~VdkQRdeiRak~~el~~k~~evEaLq~Q~~RL~~~n~eLRrk~~~~q~Q~r~l  317 (389)
                      .+++..++..+.+|..+..++.....++..++.+++-+.+-+.+|+++...++.|+.-|
T Consensus        71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566677777777777777777777777778877777777777777777777776655

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=80.16  E-value=37  Score=31.42  Aligned_cols=18  Identities=6%  Similarity=0.086  Sum_probs=7.5

Q ss_pred             HhhHHHHHHHHHHHHHHH
Q psy10418        200 HDRNTLKTRLNELEEERQ  217 (389)
Q Consensus       200 ~ERNELKa~vf~LqEEl~  217 (389)
                      +.+..|.+.|..++.++.
T Consensus        25 ~~~~~lp~el~~le~~~~   42 (256)
T 3na7_A           25 PLIREKRKDLDKALNDKE   42 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHH
Confidence            334444444444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00