Psyllid ID: psy10424


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
MLSEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRTR
cHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHcccHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHccHHHHHEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
MLSEMIMSRIEMLKndivedeevdsrffmssWVPVTVTLVAYLVFVLYIgpkwmatrkpfqiNRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFfasfgpkaqKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRTR
MLSEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKnlvvrrawvqslatrtr
MLSEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYvvssvffvLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRTR
************LKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSL*****
**SEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRT*
MLSEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRTR
MLSEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRT*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLSEMIMSRIEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRAWVQSLATRTR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query187 2.2.26 [Sep-21-2011]
Q9GZR5314 Elongation of very long c yes N/A 0.823 0.490 0.333 4e-28
Q3S8M4314 Elongation of very long c yes N/A 0.871 0.519 0.319 4e-28
Q95K73314 Elongation of very long c N/A N/A 0.871 0.519 0.319 4e-28
Q9EQC4312 Elongation of very long c yes N/A 0.807 0.483 0.326 9e-28
A0JNC4281 Elongation of very long c no N/A 0.877 0.583 0.327 8e-27
A1L3X0281 Elongation of very long c no N/A 0.877 0.583 0.336 2e-26
Q9D2Y9281 Elongation of very long c no N/A 0.877 0.583 0.331 1e-25
D4ADY9281 Elongation of very long c no N/A 0.877 0.583 0.327 1e-24
Q2KJD9299 Elongation of very long c no N/A 0.775 0.484 0.338 6e-24
Q1HRV8 358 Elongation of very long c N/A N/A 0.860 0.449 0.314 6e-23
>sp|Q9GZR5|ELOV4_HUMAN Elongation of very long chain fatty acids protein 4 OS=Homo sapiens GN=ELOVL4 PE=1 SV=1 Back     alignment and function desciption
 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 56/210 (26%)

Query: 15  NDIVE---------DEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRI 65
           ND VE         D+ V++   M S  P       YL+FV ++GPKWM  R+PFQ+  +
Sbjct: 20  NDTVEFYRWTWSIADKRVENWPLMQSPWPTLSISTLYLLFV-WLGPKWMKDREPFQMRLV 78

Query: 66  LMVYNLGQTLASLYV--------------------------------------------- 80
           L++YN G  L +L++                                             
Sbjct: 79  LIIYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYSNNVHEVRIAAALWWYFVSKGVE 138

Query: 81  -VSSVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSY 139
            + +VFF+L+KK + ++FLHVYHH  M    W  ++++ G Q  F   LN  +H IMYSY
Sbjct: 139 YLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVIMYSY 198

Query: 140 YFFASFGPKAQKYLWWKKYITKLQMVSTEV 169
           Y   +FGP  QKYLWWK+Y+T LQ++   V
Sbjct: 199 YGLTAFGPWIQKYLWWKRYLTMLQLIQFHV 228




Condensing enzyme that elongates saturated and monounsaturated very long chain fatty acids (VLCFAs). Elongates C24:0 and C26:0 acyl-CoAs. Seems to represent a photoreceptor-specific component of the fatty acid elongation system residing on the endoplasmic reticulum. May be implicated in docosahexaenoic acid (DHA) biosynthesis, which requires dietary consumption of the essential alpha-linolenic acid and a subsequent series of three elongation steps. May play a critical role in early brain and skin development.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: nEC: 8
>sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty acids protein 4 OS=Macaca mulatta GN=ELOVL4 PE=3 SV=1 Back     alignment and function description
>sp|Q95K73|ELOV4_MACFA Elongation of very long chain fatty acids protein 4 OS=Macaca fascicularis GN=ELOVL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQC4|ELOV4_MOUSE Elongation of very long chain fatty acids protein 4 OS=Mus musculus GN=Elovl4 PE=1 SV=2 Back     alignment and function description
>sp|A0JNC4|ELOV7_BOVIN Elongation of very long chain fatty acids protein 7 OS=Bos taurus GN=ELOVL7 PE=2 SV=1 Back     alignment and function description
>sp|A1L3X0|ELOV7_HUMAN Elongation of very long chain fatty acids protein 7 OS=Homo sapiens GN=ELOVL7 PE=1 SV=1 Back     alignment and function description
>sp|Q9D2Y9|ELOV7_MOUSE Elongation of very long chain fatty acids protein 7 OS=Mus musculus GN=Elovl7 PE=2 SV=1 Back     alignment and function description
>sp|D4ADY9|ELOV7_RAT Elongation of very long chain fatty acids protein 7 OS=Rattus norvegicus GN=Elovl7 PE=3 SV=1 Back     alignment and function description
>sp|Q2KJD9|ELOV5_BOVIN Elongation of very long chain fatty acids protein 5 OS=Bos taurus GN=ELOVL5 PE=2 SV=1 Back     alignment and function description
>sp|Q1HRV8|ELVL1_AEDAE Elongation of very long chain fatty acids protein AAEL008004 OS=Aedes aegypti GN=AAEL008004 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
193596491273 PREDICTED: elongation of very long chain 0.839 0.575 0.402 2e-39
239791051278 ACYPI007931 [Acyrthosiphon pisum] 0.877 0.589 0.375 5e-37
193676359278 PREDICTED: elongation of very long chain 0.877 0.589 0.375 6e-37
328699135282 PREDICTED: elongation of very long chain 0.882 0.585 0.387 6e-36
322800875165 hypothetical protein SINV_09525 [Solenop 0.770 0.872 0.479 1e-34
390346365 350 PREDICTED: elongation of very long chain 0.893 0.477 0.441 3e-34
312374286271 hypothetical protein AND_16226 [Anophele 0.802 0.553 0.439 4e-33
91093290 298 PREDICTED: similar to CG6921 CG6921-PA [ 0.802 0.503 0.4 5e-33
332016756219 Elongation of very long chain fatty acid 0.780 0.666 0.442 5e-32
195454024 322 GK12817 [Drosophila willistoni] gi|19417 0.828 0.481 0.374 1e-31
>gi|193596491|ref|XP_001942907.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/206 (40%), Positives = 121/206 (58%), Gaps = 49/206 (23%)

Query: 10  IEMLKNDIVEDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVY 69
           + +L  ++  D+ VDS   MS+  PV   L+AY++FVL +GPK M  R+PF+I  I+M Y
Sbjct: 18  LNLLNQELKFDKNVDSWMLMSTPWPVISILIAYMLFVLKLGPKMMENREPFKIKHIMMGY 77

Query: 70  NLGQTLASLYVVS----------------------------------------------- 82
           N+ QT+ +++++S                                               
Sbjct: 78  NMVQTIYNIFIISEVFFTPGIYRYLMINICNPDESESNHRIINVFYVQSWHFFISKIFDL 137

Query: 83  --SVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYY 140
             +VFFVL+KKQSH++FLHVYHHA M++T+W +LRFIKG+Q    G LN ++H IMYSYY
Sbjct: 138 LDTVFFVLRKKQSHVSFLHVYHHANMVVTTWTFLRFIKGQQGAICGILNAMIHTIMYSYY 197

Query: 141 FFASFGPKAQKYLWWKKYITKLQMVS 166
           F ++ GP+ QKYLWWKKY+T+LQ++ 
Sbjct: 198 FLSALGPQMQKYLWWKKYLTRLQIIQ 223




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239791051|dbj|BAH72041.1| ACYPI007931 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|193676359|ref|XP_001952377.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328699135|ref|XP_003240836.1| PREDICTED: elongation of very long chain fatty acids protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|322800875|gb|EFZ21719.1| hypothetical protein SINV_09525 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|390346365|ref|XP_784120.3| PREDICTED: elongation of very long chain fatty acids protein 4-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|312374286|gb|EFR21869.1| hypothetical protein AND_16226 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|91093290|ref|XP_967030.1| PREDICTED: similar to CG6921 CG6921-PA [Tribolium castaneum] gi|270014195|gb|EFA10643.1| hypothetical protein TcasGA2_TC016280 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332016756|gb|EGI57585.1| Elongation of very long chain fatty acids protein 7 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195454024|ref|XP_002074051.1| GK12817 [Drosophila willistoni] gi|194170136|gb|EDW85037.1| GK12817 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query187
FB|FBgn0260942322 bond "james bond" [Drosophila 0.417 0.242 0.538 8.2e-37
ZFIN|ZDB-GENE-030131-5485282 elovl7b "ELOVL family member 7 0.417 0.276 0.564 7.9e-33
UNIPROTKB|A5PKE6314 ELOVL4 "ELOVL4 protein" [Bos t 0.438 0.261 0.487 5.5e-32
UNIPROTKB|J9PBB9314 ELOVL4 "Uncharacterized protei 0.438 0.261 0.487 5.5e-32
UNIPROTKB|F1RQL1309 F1RQL1 "Uncharacterized protei 0.438 0.265 0.487 8.8e-32
UNIPROTKB|Q9GZR5314 ELOVL4 "Elongation of very lon 0.438 0.261 0.475 1.1e-31
MGI|MGI:1933331312 Elovl4 "elongation of very lon 0.438 0.262 0.475 1.1e-31
UNIPROTKB|Q3S8M4314 ELOVL4 "Elongation of very lon 0.438 0.261 0.487 1.4e-31
UNIPROTKB|Q95K73314 ELOVL4 "Elongation of very lon 0.438 0.261 0.487 1.4e-31
UNIPROTKB|I3LVJ0304 LOC100623120 "Uncharacterized 0.438 0.269 0.487 1.4e-31
FB|FBgn0260942 bond "james bond" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 257 (95.5 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
 Identities = 42/78 (53%), Positives = 57/78 (73%)

Query:    88 LKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGP 147
             L+KK + ++FLHVYHH   +L SW YL++  GEQ + +G LN  VH IMY YY  A+ GP
Sbjct:   134 LRKKDNQVSFLHVYHHTITVLFSWGYLKYAPGEQGVIIGILNSGVHIIMYFYYMVAAMGP 193

Query:   148 KAQKYLWWKKYITKLQMV 165
             + QKYLWWKKY+T +Q++
Sbjct:   194 QYQKYLWWKKYMTSIQLI 211


GO:0016021 "integral to membrane" evidence=IEA
GO:0000915 "cytokinesis, actomyosin contractile ring assembly" evidence=IMP
GO:0051225 "spindle assembly" evidence=IMP
GO:0007111 "cytokinesis after meiosis II" evidence=IMP
GO:0007110 "cytokinesis after meiosis I" evidence=IMP
GO:0007112 "male meiosis cytokinesis" evidence=IMP
GO:0000212 "meiotic spindle organization" evidence=IMP
ZFIN|ZDB-GENE-030131-5485 elovl7b "ELOVL family member 7, elongation of long chain fatty acids (yeast) b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A5PKE6 ELOVL4 "ELOVL4 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9PBB9 ELOVL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RQL1 F1RQL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GZR5 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1933331 Elovl4 "elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3S8M4 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q95K73 ELOVL4 "Elongation of very long chain fatty acids protein 4" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
UNIPROTKB|I3LVJ0 LOC100623120 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query187
pfam01151244 pfam01151, ELO, GNS1/SUR4 family 1e-43
PTZ00251272 PTZ00251, PTZ00251, fatty acid elongase; Provision 2e-04
>gnl|CDD|216332 pfam01151, ELO, GNS1/SUR4 family Back     alignment and domain information
 Score =  145 bits (367), Expect = 1e-43
 Identities = 71/187 (37%), Positives = 93/187 (49%), Gaps = 50/187 (26%)

Query: 27  FFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVS---- 82
             +SS  PV + +V YLVFV ++GPK M  RKPF + R+L+V+NL   L SLY       
Sbjct: 1   PLLSSPWPVILIIVLYLVFV-FLGPKIMRNRKPFDLKRLLIVHNLFLVLLSLYGFYGLLA 59

Query: 83  --------------------------------------------SVFFVLKKKQSHITFL 98
                                                       +VF VL+KKQ  ++FL
Sbjct: 60  GAGWGRGLYLALCVCYSFDPGAIRMGLVGFWYWLFLSKFLELLDTVFLVLRKKQRQLSFL 119

Query: 99  HVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCLVHAIMYSYYFFASFGPKAQKYLWWKKY 158
           HVYHHA MLL SW  L++  G    F+  LN  VH IMY YYF A+ G +    +WWKKY
Sbjct: 120 HVYHHATMLLYSWLGLKYGPGGHFWFIALLNSFVHVIMYFYYFLAALGAR-GLPVWWKKY 178

Query: 159 ITKLQMV 165
           IT+LQ++
Sbjct: 179 ITQLQII 185


Members of this family are involved in long chain fatty acid elongation systems that produce the 26-carbon precursors for ceramide and sphingolipid synthesis. Predicted to be integral membrane proteins, in eukaryotes they are probably located on the endoplasmic reticulum. Yeast ELO3 affects plasma membrane H+-ATPase activity, and may act on a glucose-signaling pathway that controls the expression of several genes that are transcriptionally regulated by glucose such as PMA1. Length = 244

>gnl|CDD|140278 PTZ00251, PTZ00251, fatty acid elongase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 187
KOG3071|consensus274 100.0
PF01151250 ELO: GNS1/SUR4 family; InterPro: IPR002076 This gr 100.0
PTZ00251272 fatty acid elongase; Provisional 100.0
KOG3072|consensus282 100.0
>KOG3071|consensus Back     alignment and domain information
Probab=100.00  E-value=7e-50  Score=345.65  Aligned_cols=164  Identities=44%  Similarity=0.766  Sum_probs=153.7

Q ss_pred             cCcccccccCccCchHHHHHHHhhhheeeecccccccCCCCcccchhHHhHHHHHHHHHHHHHH----------------
Q psy10424         19 EDEEVDSRFFMSSWVPVTVTLVAYLVFVLYIGPKWMATRKPFQINRILMVYNLGQTLASLYVVS----------------   82 (187)
Q Consensus        19 ~d~r~~~wpl~~s~~~~~~i~~~Yl~~V~~~g~~~M~~Rkp~~L~~~~~~~N~~l~~~S~~~~~----------------   82 (187)
                      +|++++ ||++++|+++..++.+|+ +|...||++|+||||++||+++.+||++|++.|++++.                
T Consensus        18 ~~~~v~-~~~l~s~~~~~~il~~yl-~v~~~G~~~m~nrkp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c   95 (274)
T KOG3071|consen   18 PDDRVR-SPLLSSPWPLLSILLAYL-FVLKLGPKLMRNRKPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRC   95 (274)
T ss_pred             CCcccc-chhccCcHHHHHHHHHHH-HHHHhcHhhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEE
Confidence            677777 999999999999999999 77689999999999999999999999999999999665                


Q ss_pred             -------------------------------HHHHHHhcCCCceeEEeeecchhhhhhhhhhccccccchhHHHHHHHHH
Q psy10424         83 -------------------------------SVFFVLKKKQSHITFLHVYHHAAMLLTSWAYLRFIKGEQVIFLGALNCL  131 (187)
Q Consensus        83 -------------------------------Tvf~VLRKK~~qvsfLHvYHH~~~~~~~w~~~~~~~~~~~~~~~~~Ns~  131 (187)
                                                     |+|+|||||++|+||||+|||++|+..+|.++++.++|++++.+.+|++
T Consensus        96 ~~~~~~~~~~~~r~~~~~~~yylsKflel~DTvFfVLRKk~rqlsFLHvyHH~~m~~~~~~~l~~~~~g~~~~~~~lNs~  175 (274)
T KOG3071|consen   96 QPCFPSDHEPKLRERFWSYLYYLSKFLELLDTVFFVLRKKDRQLSFLHVYHHGVMAFLSYLWLKFYGGGHGFFAILLNSF  175 (274)
T ss_pred             EecCCCCCCcceeehHHHHHHHHHHHHHHHhheeeEEEccCCceEEEEEEecchHHHhhhheeEEeCCceeeeeeehhhh
Confidence                                           9999999999999999999999999999999999998999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCcccchhHHHHhhHHHHHHHhHHhHHHHHH-HHh-hhhh
Q psy10424        132 VHAIMYSYYFFASFGPKAQKYLWWKKYITKLQMVSTEVKNLVVRRA-WVQ-SLAT  184 (187)
Q Consensus       132 VH~iMY~YY~lsa~g~~~~~~~~~k~~iT~~QivQF~~~~~~~~~~-~~~-~~~~  184 (187)
                      ||++||+||++||+|++.++.+|||+++|..|++||++....+..+ +++ +|..
T Consensus       176 VHviMY~YYflsa~G~~v~~~lWWkky~t~vQlvqf~~~~~~~~~~~~~~~~c~~  230 (274)
T KOG3071|consen  176 VHVIMYGYYFLSAFGPRVQWYLWWKKYITIVQLVQFLILFVHTLYVHLFKPGCCF  230 (274)
T ss_pred             HHHHHHHHHHHHhhCcCccccchHHHHHHHHHHHHHHHHHHHHhheeeecCCCCC
Confidence            9999999999999999999999999999999999999997777666 677 6754



>PF01151 ELO: GNS1/SUR4 family; InterPro: IPR002076 This group of eukaryotic integral membrane proteins are evolutionary related, but exact function has not yet clearly been established Back     alignment and domain information
>PTZ00251 fatty acid elongase; Provisional Back     alignment and domain information
>KOG3072|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00