Psyllid ID: psy10436

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MRIDLLIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
cccccEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccccccHHHHHcccccEEEEHHHHHHHHHHHHHHHHccccccEEccccccccccEEEEEccccccccccccHHHHHHHHHHHHccccccc
ccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEEHccccccccHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccEEEEcccccEEEccccccHHHHHHHHHHHHccccEcc
MRIDLLIAVsiqpdknlvsdapkvdisniklssppsykkgeLVATRLAYGIGLAKLAASNSRVialdgdtknstfSDKLKKAFHEasqvkgkptaLIAKtfkgkdfpniedkeewhgkplgsssadvLKAYPDRYIECFIAEQNLVGVAIGAacrnrtvpfirmgaisqtnvnfvgshcgvsigedgpsqmalEDIAMfrtipaclvf
MRIDLLIAvsiqpdknlvsdapkvdisniklssppsykkgELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFheasqvkgkptaliaKTFKGKDFPNIEDKeewhgkplgssSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
MRIDLLIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
****LLIAVSI***************************KGELVATRLAYGIGLAKLAASNSRVIALD****************************LIAKTF***********************ADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLV*
****LLI*******************SNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
MRIDLLIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
MRIDLLIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRIDLLIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPFIRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query208 2.2.26 [Sep-21-2011]
Q9D4D4 627 Transketolase-like protei yes N/A 0.745 0.247 0.472 2e-49
P40142 623 Transketolase OS=Mus musc no N/A 0.677 0.226 0.472 2e-46
Q6B855 623 Transketolase OS=Bos taur yes N/A 0.740 0.247 0.452 5e-46
P50137 623 Transketolase OS=Rattus n no N/A 0.677 0.226 0.467 6e-46
P29401 623 Transketolase OS=Homo sap yes N/A 0.740 0.247 0.457 1e-45
Q5R1W6 623 Transketolase OS=Pan trog yes N/A 0.740 0.247 0.457 1e-45
Q60HC7 623 Transketolase OS=Macaca f N/A N/A 0.740 0.247 0.457 1e-45
Q2NL26 596 Transketolase-like protei no N/A 0.745 0.260 0.441 4e-45
Q5R4C1 623 Transketolase OS=Pongo ab yes N/A 0.740 0.247 0.447 2e-44
Q2NKZ4 626 Transketolase-like protei no N/A 0.745 0.247 0.436 7e-43
>sp|Q9D4D4|TKTL2_MOUSE Transketolase-like protein 2 OS=Mus musculus GN=Tktl2 PE=2 SV=1 Back     alignment and function desciption
 Score =  195 bits (495), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 129/222 (58%), Gaps = 67/222 (30%)

Query: 6   LIAVSIQPDKNL-----VSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASN 60
           LI   IQ ++NL     + D+P++ +SN K++S P YK G+++ATR AYG+ LAKL  SN
Sbjct: 278 LIENRIQTNRNLTPKPPIEDSPRISMSNTKMTSLPVYKLGDMIATREAYGLALAKLGQSN 337

Query: 61  SRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPL 120
            RVI LDGDTKNSTFS+  KK                                       
Sbjct: 338 QRVIVLDGDTKNSTFSEVFKKE-------------------------------------- 359

Query: 121 GSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGA 166
                     +P+R+IECFIAEQN+V VA+G A R RT+ F              IRMGA
Sbjct: 360 ----------HPERFIECFIAEQNMVSVALGCATRGRTIAFVSTFAAFLTRAFDQIRMGA 409

Query: 167 ISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
           ISQTN+NFVGSHCGVS+GEDGPSQMALED+AMFR+IP C VF
Sbjct: 410 ISQTNINFVGSHCGVSVGEDGPSQMALEDLAMFRSIPNCTVF 451
Plays an essential role in total transketolase activity and cell proliferation in cancer cells; after transfection with anti-TKTL1 siRNA, total transketolase activity dramatically decreases and proliferation was significantly inhibited in cancer cells. Play a pivotal role in carcinogenesis.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P40142|TKT_MOUSE Transketolase OS=Mus musculus GN=Tkt PE=1 SV=1 Back     alignment and function description
>sp|Q6B855|TKT_BOVIN Transketolase OS=Bos taurus GN=TKT PE=2 SV=1 Back     alignment and function description
>sp|P50137|TKT_RAT Transketolase OS=Rattus norvegicus GN=Tkt PE=1 SV=1 Back     alignment and function description
>sp|P29401|TKT_HUMAN Transketolase OS=Homo sapiens GN=TKT PE=1 SV=3 Back     alignment and function description
>sp|Q5R1W6|TKT_PANTR Transketolase OS=Pan troglodytes GN=TKT PE=2 SV=1 Back     alignment and function description
>sp|Q60HC7|TKT_MACFA Transketolase OS=Macaca fascicularis GN=TKT PE=2 SV=1 Back     alignment and function description
>sp|Q2NL26|TKTL1_BOVIN Transketolase-like protein 1 OS=Bos taurus GN=TKTL1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R4C1|TKT_PONAB Transketolase OS=Pongo abelii GN=TKT PE=2 SV=1 Back     alignment and function description
>sp|Q2NKZ4|TKTL2_BOVIN Transketolase-like protein 2 OS=Bos taurus GN=TKTL2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
383852224 587 PREDICTED: transketolase-like protein 2- 0.759 0.269 0.559 2e-54
383852218 627 PREDICTED: transketolase-like protein 2- 0.730 0.242 0.565 1e-53
383852220 622 PREDICTED: transketolase-like protein 2- 0.730 0.244 0.565 1e-53
383852222 594 PREDICTED: transketolase-like protein 2- 0.730 0.255 0.565 2e-53
289739979 627 transketolase [Glossina morsitans morsit 0.668 0.221 0.572 2e-53
312380681 2724 hypothetical protein AND_07198 [Anophele 0.730 0.055 0.537 8e-53
350423545 594 PREDICTED: transketolase-like protein 2- 0.730 0.255 0.546 1e-52
350423538 627 PREDICTED: transketolase-like protein 2- 0.730 0.242 0.546 1e-52
350423548 577 PREDICTED: transketolase-like protein 2- 0.730 0.263 0.546 1e-52
350423542 622 PREDICTED: transketolase-like protein 2- 0.730 0.244 0.546 1e-52
>gi|383852224|ref|XP_003701628.1| PREDICTED: transketolase-like protein 2-like isoform 4 [Megachile rotundata] Back     alignment and taxonomy information
 Score =  217 bits (552), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 123/220 (55%), Positives = 134/220 (60%), Gaps = 62/220 (28%)

Query: 3   IDLLIAVSIQPDKNLVSDAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSR 62
           I +   +S+ P K LV DAP VDISNIKL+SPPSYK GE VATRLAYG  LAKLA +N R
Sbjct: 240 IQVRTKISLHPQKPLVDDAPVVDISNIKLASPPSYKLGEQVATRLAYGTALAKLAKNNPR 299

Query: 63  VIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGS 122
           VIALDGDTKNSTF++K+K                            + D           
Sbjct: 300 VIALDGDTKNSTFAEKIK----------------------------VVD----------- 320

Query: 123 SSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAIS 168
                    P R+IE FIAEQNLVGVAIGA CR+RTV F              IRMGAIS
Sbjct: 321 ---------PARFIEGFIAEQNLVGVAIGATCRDRTVAFVSAFATFFTRAFDQIRMGAIS 371

Query: 169 QTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
           QTNVNFVGSHCGVSIGEDGPSQM LEDIAMFRTIP   VF
Sbjct: 372 QTNVNFVGSHCGVSIGEDGPSQMGLEDIAMFRTIPGSTVF 411

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383852218|ref|XP_003701625.1| PREDICTED: transketolase-like protein 2-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383852220|ref|XP_003701626.1| PREDICTED: transketolase-like protein 2-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383852222|ref|XP_003701627.1| PREDICTED: transketolase-like protein 2-like isoform 3 [Megachile rotundata] Back     alignment and taxonomy information
>gi|289739979|gb|ADD18737.1| transketolase [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|312380681|gb|EFR26611.1| hypothetical protein AND_07198 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|350423545|ref|XP_003493514.1| PREDICTED: transketolase-like protein 2-like isoform 3 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350423538|ref|XP_003493512.1| PREDICTED: transketolase-like protein 2-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350423548|ref|XP_003493515.1| PREDICTED: transketolase-like protein 2-like isoform 4 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350423542|ref|XP_003493513.1| PREDICTED: transketolase-like protein 2-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query208
FB|FBgn0037607 626 CG8036 [Drosophila melanogaste 0.442 0.146 0.672 1.4e-50
UNIPROTKB|F1PE28 576 TKT "Uncharacterized protein" 0.442 0.159 0.579 2.7e-45
ZFIN|ZDB-GENE-030909-13 625 tkt "transketolase" [Danio rer 0.442 0.147 0.654 2.8e-45
UNIPROTKB|A8U4R4 623 tkt "Uncharacterized protein" 0.384 0.128 0.617 2.1e-44
MGI|MGI:105992 623 Tkt "transketolase" [Mus muscu 0.384 0.128 0.606 2.3e-44
UNIPROTKB|B4E022 576 TKT "Transketolase" [Homo sapi 0.442 0.159 0.560 4.3e-44
UNIPROTKB|A7E3W4 596 TKT "Transketolase" [Bos tauru 0.384 0.134 0.617 4.5e-44
RGD|621036 623 Tkt "transketolase" [Rattus no 0.384 0.128 0.606 4.7e-44
UNIPROTKB|A7Z014 623 TKT "TKT protein" [Bos taurus 0.384 0.128 0.617 5.8e-44
UNIPROTKB|P29401 623 TKT "Transketolase" [Homo sapi 0.442 0.147 0.560 6.9e-44
FB|FBgn0037607 CG8036 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 325 (119.5 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 72/107 (67%), Positives = 76/107 (71%)

Query:   117 GKPLGSSSADVLKAY-PDRYIECFIAEQNLVGVAIGAACRNRTVPF-------------- 161
             G    S+ +D LK   P RYIECFIAEQNLVGVA+GAACR RTV F              
Sbjct:   344 GDTKNSTFSDKLKNLDPQRYIECFIAEQNLVGVAVGAACRRRTVAFVSTFATFFTRAFDQ 403

Query:   162 IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
             IRMGAISQTNVNFVGSHCG SIGEDGPSQM LEDIAMFRTIP   +F
Sbjct:   404 IRMGAISQTNVNFVGSHCGCSIGEDGPSQMGLEDIAMFRTIPGSTIF 450
GO:0004802 "transketolase activity" evidence=ISS
GO:0005811 "lipid particle" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0031122 "cytoplasmic microtubule organization" evidence=IMP
GO:0031935 "regulation of chromatin silencing" evidence=IMP
UNIPROTKB|F1PE28 TKT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030909-13 tkt "transketolase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A8U4R4 tkt "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:105992 Tkt "transketolase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4E022 TKT "Transketolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7E3W4 TKT "Transketolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|621036 Tkt "transketolase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z014 TKT "TKT protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P29401 TKT "Transketolase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.2.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
PRK05899 586 PRK05899, PRK05899, transketolase; Reviewed 4e-40
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 3e-35
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 5e-29
COG3958 312 COG3958, COG3958, Transketolase, C-terminal subuni 7e-20
COG0021 663 COG0021, TktA, Transketolase [Carbohydrate transpo 5e-16
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 3e-15
cd02012255 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami 1e-14
pfam00456333 pfam00456, Transketolase_N, Transketolase, thiamin 3e-11
COG0021 663 COG0021, TktA, Transketolase [Carbohydrate transpo 2e-09
TIGR00232 653 TIGR00232, tktlase_bact, transketolase, bacterial 5e-07
PLN02790 654 PLN02790, PLN02790, transketolase 6e-06
TIGR00204 617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 8e-06
TIGR00232 653 TIGR00232, tktlase_bact, transketolase, bacterial 1e-05
PTZ00089 661 PTZ00089, PTZ00089, transketolase; Provisional 1e-05
PRK12753 663 PRK12753, PRK12753, transketolase; Reviewed 2e-05
COG1154 627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 3e-05
PRK05444 580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 6e-04
cd02017386 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate 7e-04
PRK12753 663 PRK12753, PRK12753, transketolase; Reviewed 0.001
PRK12754 663 PRK12754, PRK12754, transketolase; Reviewed 0.001
PTZ00089 661 PTZ00089, PTZ00089, transketolase; Provisional 0.002
COG2609 887 COG2609, AceE, Pyruvate dehydrogenase complex, deh 0.002
>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed Back     alignment and domain information 
 Score =  143 bits (363), Expect = 4e-40
 Identities = 63/253 (24%), Positives = 87/253 (34%), Gaps = 92/253 (36%)

Query: 44  ATRLAYGIGLAKLAA---SNSRVIALDGDTKNSTFSDKLKK------------------- 81
           A  LA  + L  L      N   I++DG T+   F++ +KK                   
Sbjct: 170 ACSLAGHLKLGNLIVIYDDNR--ISIDGPTEGW-FTEDVKKRFEAYGWHVIEVDGHDVEA 226

Query: 82  ---AFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG----------------S 122
              A  EA     KPT +IAKT  GK  PN E   + HG PLG                 
Sbjct: 227 IDAAIEEAKAST-KPTLIIAKTIIGKGAPNKEGTHKVHGAPLGAEEIAAAKKELGWDYRK 285

Query: 123 SSADVLKA---------------------------------YPDRYIECFIAEQNLVGVA 149
           +S   L A                                 Y  RYI   + E  +  +A
Sbjct: 286 ASGKALNALAKALPELVGGSADLAGSNNTKIKGSKDFAPEDYSGRYIHYGVREFAMAAIA 345

Query: 150 IGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALED 195
            G A     +PF              IR+ A+ +  V +V +H  + +GEDGP+   +E 
Sbjct: 346 NGLALHGGFIPFGGTFLVFSDYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTHQPVEQ 405

Query: 196 IAMFRTIPACLVF 208
           +A  R IP   V 
Sbjct: 406 LASLRAIPNLTVI 418

Length = 586
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain Back     alignment and domain information
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast Back     alignment and domain information
>gnl|CDD|215424 PLN02790, PLN02790, transketolase Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast Back     alignment and domain information
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional Back     alignment and domain information
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|238975 cd02017, TPP_E1_EcPDC_like, Thiamine pyrophosphate (TPP) family, E1 of E Back     alignment and domain information
>gnl|CDD|183723 PRK12753, PRK12753, transketolase; Reviewed Back     alignment and domain information
>gnl|CDD|183724 PRK12754, PRK12754, transketolase; Reviewed Back     alignment and domain information
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional Back     alignment and domain information
>gnl|CDD|225329 COG2609, AceE, Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 208
PRK12754 663 transketolase; Reviewed 100.0
COG0021 663 TktA Transketolase [Carbohydrate transport and met 100.0
PRK12753 663 transketolase; Reviewed 100.0
PLN02790 654 transketolase 100.0
KOG0523|consensus 632 100.0
PTZ00089 661 transketolase; Provisional 100.0
PLN02234 641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
TIGR00232 653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PRK12571 641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PLN02582 677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
COG1154 627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
TIGR00204 617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
PRK12315 581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK05444 580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK05899 624 transketolase; Reviewed 100.0
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
PLN02225 701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
COG3958 312 Transketolase, C-terminal subunit [Carbohydrate tr 99.97
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 99.91
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 99.83
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 99.83
PLN02683 356 pyruvate dehydrogenase E1 component subunit beta 99.82
CHL00144 327 odpB pyruvate dehydrogenase E1 component beta subu 99.82
PRK09212 327 pyruvate dehydrogenase subunit beta; Validated 99.81
PTZ00182 355 3-methyl-2-oxobutanate dehydrogenase; Provisional 99.81
PF00456332 Transketolase_N: Transketolase, thiamine diphospha 99.8
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.8
PRK11892 464 pyruvate dehydrogenase subunit beta; Provisional 99.79
TIGR00759 885 aceE pyruvate dehydrogenase E1 component, homodime 99.77
PRK05261 785 putative phosphoketolase; Provisional 99.72
COG3959243 Transketolase, N-terminal subunit [Carbohydrate tr 99.72
cd02017386 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam 99.71
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 99.47
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 99.0
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 98.84
COG2609 887 AceE Pyruvate dehydrogenase complex, dehydrogenase 98.79
COG0022 324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 98.59
cd02011227 TPP_PK Thiamine pyrophosphate (TPP) family, Phosph 98.06
PF13292270 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn 97.59
KOG0524|consensus 359 97.41
PF09364379 XFP_N: XFP N-terminal domain; InterPro: IPR018970 96.03
KOG0525|consensus 362 95.9
PLN02374433 pyruvate dehydrogenase (acetyl-transferring) 95.8
PLN02269362 Pyruvate dehydrogenase E1 component subunit alpha 95.65
CHL00149341 odpA pyruvate dehydrogenase E1 component alpha sub 95.48
cd02000293 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) 95.14
TIGR00239 929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 94.61
KOG0523|consensus 632 94.29
TIGR03181341 PDH_E1_alph_x pyruvate dehydrogenase E1 component, 93.92
PRK09404 924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 93.81
TIGR03182315 PDH_E1_alph_y pyruvate dehydrogenase E1 component, 93.8
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 92.97
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 92.87
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 92.63
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 92.15
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 90.93
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 90.06
PF00676300 E1_dh: Dehydrogenase E1 component; InterPro: IPR00 87.66
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 87.3
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 87.19
cd02016265 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami 84.96
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 84.73
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 84.53
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 81.75
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 80.69
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 80.19
>PRK12754 transketolase; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=2.3e-44  Score=348.16  Aligned_cols=177  Identities=30%  Similarity=0.449  Sum_probs=155.8

Q ss_pred             CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEE-EcCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436         27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIA-LDGDTKNSTFSDKLKKAFHEASQVKGK   92 (208)
Q Consensus        27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~-VDGhd~~~~~~~~l~~Al~~ak~~~~k   92 (208)
                      .+|++++|++++|+||++++|.++             ++..+|++|||+++. |||||+     ++|.+|+++++..++|
T Consensus       163 ~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~~~~~~~r~~a~Gw~vi~vvDG~D~-----~ai~~A~~~a~~~~~~  237 (663)
T PRK12754        163 SHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRGIDGHDA-----DSIKRAVEEARAVTDK  237 (663)
T ss_pred             HHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhccCccHHHHHHhcCCeEEeeECCCCH-----HHHHHHHHHHHhcCCC
Confidence            345555999999999999998432             457899999999998 899998     9999999999877789


Q ss_pred             CEEEEEEeecCCCCCccCCCccccCCcCCC--------------------------------------------------
Q psy10436         93 PTALIAKTFKGKDFPNIEDKEEWHGKPLGS--------------------------------------------------  122 (208)
Q Consensus        93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~~--------------------------------------------------  122 (208)
                      |++|+++|+||+|++++|++.+|||.+++.                                                  
T Consensus       238 Pt~I~~~T~~g~G~~~~e~~~~~Hg~~l~~~~~~~~~~~l~~~~~~F~v~~~v~~~~~~~~~~~~~~~~w~~~~~~~~~~  317 (663)
T PRK12754        238 PSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKA  317 (663)
T ss_pred             CEEEEEEeeeccCccccCCCccccCCCCCHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999875210                                                  


Q ss_pred             ------------------------------------C--------------------------------------ccccc
Q psy10436        123 ------------------------------------S--------------------------------------SADVL  128 (208)
Q Consensus       123 ------------------------------------~--------------------------------------l~~f~  128 (208)
                                                          .                                      ..+|+
T Consensus       318 ~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~atR~~~~~~L~~la~~~~~lv~~sADl~~s~~~~~~~~~~f~  397 (663)
T PRK12754        318 YPQEAAEFTRRMKGEMPADFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSGSKAIN  397 (663)
T ss_pred             CHHHHHHHHHHhcCCCchhHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhhCCCEEEEeCCcccccCcccccccccc
Confidence                                                0                                      13466


Q ss_pred             ccCCCcceeeccccccHHHHHHHHHhCCCcccE--------------EEeccccCCCcEEEEecCCccccCCCCCCCChh
Q psy10436        129 KAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALE  194 (208)
Q Consensus       129 ~~~P~r~~~~GIaE~~mv~~AaGlA~~G~~~~~--------------ir~~a~~~~~v~~v~~~~G~~~g~dG~TH~~ie  194 (208)
                      ++||+|||++|||||+|+++|||||++|.++||              ||+.||+++||++|+||+|+++|+||+|||++|
T Consensus       398 ~~~p~r~i~~GIaE~~Mv~iaaGlA~~~G~~Pf~~tf~~F~~r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iE  477 (663)
T PRK12754        398 EDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVE  477 (663)
T ss_pred             ccCCCCeEeeccchhhHHHHHhhHHhcCCCeEEEEeeHHHHHHHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHH
Confidence            789999999999999999999999995543565              888899999999999999999999999999999


Q ss_pred             HHHHhccCCCceeC
Q psy10436        195 DIAMFRTIPACLVF  208 (208)
Q Consensus       195 Dia~~r~lPn~~V~  208 (208)
                      ||++||+||||+|+
T Consensus       478 dla~lR~iPn~~V~  491 (663)
T PRK12754        478 QVASLRVTPNMSTW  491 (663)
T ss_pred             HHHHHhcCCCcEEe
Confidence            99999999999986

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>KOG0523|consensus Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2 Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O Back     alignment and domain information
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B Back     alignment and domain information
>KOG0524|consensus Back     alignment and domain information
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>KOG0525|consensus Back     alignment and domain information
>PLN02374 pyruvate dehydrogenase (acetyl-transferring) Back     alignment and domain information
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha Back     alignment and domain information
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed Back     alignment and domain information
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC) Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>KOG0523|consensus Back     alignment and domain information
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC) Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3mos_A 616 The Structure Of Human Transketolase Length = 616 1e-46
3ooy_A 616 Crystal Structure Of Human Transketolase (Tkt) Leng 1e-46
1r9j_A 673 Transketolase From Leishmania Mexicana Length = 673 2e-05
1trk_A 680 Refined Structure Of Transketolase From Saccharomyc 3e-05
1ay0_A 680 Identification Of Catalytically Important Residues 3e-05
1tka_A 678 Specificity Of Coenzyme Binding In Thiamin Diphosph 3e-05
3hyl_A 690 Crystal Structure Of Transketolase From Bacillus An 1e-04
1itz_A 675 Maize Transketolase In Complex With Tpp Length = 67 2e-04
3l84_A 632 High Resolution Crystal Structure Of Transketolase 3e-04
3m7i_A 635 Crystal Structure Of Transketolase In Complex With 3e-04
>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (463), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/221 (45%), Positives = 125/221 (56%), Gaps = 67/221 (30%)
Query: 7   IAVSIQPDKNLVS-----DAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNS 61
           I   IQ  K +++     DAP VDI+NI++ S PSYK G+ +ATR AYG  LAKL  ++ 
Sbjct: 272 IYSQIQSKKKILATPPQEDAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASD 331
Query: 62  RVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLG 121
           R+IALDGDTKNSTFS+  KK                                        
Sbjct: 332 RIIALDGDTKNSTFSEIFKKE--------------------------------------- 352
Query: 122 SSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNRTVPF--------------IRMGAI 167
                    +PDR+IEC+IAEQN+V +A+G A RNRTVPF              IRM AI
Sbjct: 353 ---------HPDRFIECYIAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAI 403
Query: 168 SQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF 208
           S++N+N  GSHCGVSIGEDGPSQMALED+AMFR++P   VF
Sbjct: 404 SESNINLCGSHCGVSIGEDGPSQMALEDLAMFRSVPTSTVF 444
>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616 Back     alignment and structure
>pdb|1R9J|A Chain A, Transketolase From Leishmania Mexicana Length = 673 Back     alignment and structure
>pdb|1TRK|A Chain A, Refined Structure Of Transketolase From Saccharomyces Cerevisiae At 2.0 Angstroms Resolution Length = 680 Back     alignment and structure
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In Yeast Transketolase Length = 680 Back     alignment and structure
>pdb|1TKA|A Chain A, Specificity Of Coenzyme Binding In Thiamin Diphosphate Dependent Enzymes: Crystal Structures Of Yeast Transketolase In Complex With Analogs Of Thiamin Diphosphate Length = 678 Back     alignment and structure
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis Length = 690 Back     alignment and structure
>pdb|1ITZ|A Chain A, Maize Transketolase In Complex With Tpp Length = 675 Back     alignment and structure
>pdb|3L84|A Chain A, High Resolution Crystal Structure Of Transketolase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168 Length = 632 Back     alignment and structure
>pdb|3M7I|A Chain A, Crystal Structure Of Transketolase In Complex With Thiamine Diphosphate, Ribose-5-Phosphate(Pyranose Form) And Magnesium Ion Length = 635 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query208
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 2e-58
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 3e-15
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 5e-06
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 1e-05
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 7e-06
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 2e-05
3l84_A 632 Transketolase; TKT, structural genomics, center fo 1e-05
3l84_A 632 Transketolase; TKT, structural genomics, center fo 1e-04
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 1e-05
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 2e-05
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 1e-05
3uk1_A 711 Transketolase; structural genomics, seattle struct 1e-05
3uk1_A 711 Transketolase; structural genomics, seattle struct 4e-04
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 2e-05
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 2e-04
1r9j_A 673 Transketolase; domains, EACH of the alpha/beta typ 2e-05
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 2e-05
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 2e-05
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 3e-05
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 3e-05
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
 Score =  192 bits (491), Expect = 2e-58
 Identities = 97/203 (47%), Positives = 118/203 (58%), Gaps = 62/203 (30%)

Query: 20  DAPKVDISNIKLSSPPSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKL 79
           DAP VDI+NI++ S PSYK G+ +ATR AYG  LAKL  ++ R+IALDGDTKNSTFS+  
Sbjct: 290 DAPSVDIANIRMPSLPSYKVGDKIATRKAYGQALAKLGHASDRIIALDGDTKNSTFSEIF 349

Query: 80  KKAFHEASQVKGKPTALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECF 139
           KK                                                 +PDR+IEC+
Sbjct: 350 KKE------------------------------------------------HPDRFIECY 361

Query: 140 IAEQNLVGVAIGAACRNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGE 185
           IAEQN+V +A+G A RNRTVPF              IRM AIS++N+N  GSHCGVSIGE
Sbjct: 362 IAEQNMVSIAVGCATRNRTVPFCSTFAAFFTRAFDQIRMAAISESNINLCGSHCGVSIGE 421

Query: 186 DGPSQMALEDIAMFRTIPACLVF 208
           DGPSQMALED+AMFR++P   VF
Sbjct: 422 DGPSQMALEDLAMFRSVPTSTVF 444
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616 Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Length = 663 Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Length = 663 Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Length = 669 Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Length = 669 Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Length = 632 Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Length = 690 Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Length = 690 Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Length = 651 Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Length = 711 Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Length = 711 Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Length = 680 Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Length = 680 Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 673 Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Length = 700 Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Length = 700 Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 675 Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Length = 675 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
3rim_A 700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
3l84_A 632 Transketolase; TKT, structural genomics, center fo 100.0
3m49_A 690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3kom_A 663 Transketolase; rossmann fold, csgid, transferase, 100.0
3uk1_A 711 Transketolase; structural genomics, seattle struct 100.0
3mos_A 616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
1itz_A 675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
2r8o_A 669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
1r9j_A 673 Transketolase; domains, EACH of the alpha/beta typ 100.0
1gpu_A 680 Transketolase; transferase(ketone residues); HET: 100.0
2e6k_A 651 Transketolase; structural genomics, NPPSFA, nation 100.0
2o1x_A 629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 99.97
2o1s_A 621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 99.97
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 99.96
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 99.95
1ik6_A 369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 99.79
1qs0_B 338 2-oxoisovalerate dehydrogenase beta-subunit; heter 99.77
2bfd_B 342 2-oxoisovalerate dehydrogenase beta subunit; oxido 99.76
2ozl_B 341 PDHE1-B, pyruvate dehydrogenase E1 component subun 99.73
2yic_A 868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 99.73
2jgd_A 933 2-oxoglutarate dehydrogenase E1 component; flavopr 99.73
1w85_B 324 Pyruvate dehydrogenase E1 component, beta subunit; 99.71
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 99.7
1umd_B 324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 99.69
1umd_A367 E1-alpha, 2-OXO acid dehydrogenase alpha subunit; 97.85
1qs0_A407 2-oxoisovalerate dehydrogenase alpha-subunit; hete 97.58
1w85_A368 Pyruvate dehydrogenase E1 component, alpha subunit 97.56
2bfd_A400 2-oxoisovalerate dehydrogenase alpha subunit; oxid 97.55
2ozl_A365 PDHE1-A type I, pyruvate dehydrogenase E1 componen 95.39
4feg_A603 Pyruvate oxidase; carbanion, structure activity re 92.86
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 92.0
1yd7_A 395 2-keto acid:ferredoxin oxidoreductase subunit alph 89.39
1ozh_A566 ALS, acetolactate synthase, catabolic; acetohydrox 88.26
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 86.63
1q6z_A528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 85.12
2pan_A616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 84.07
2iht_A573 Carboxyethylarginine synthase; thiamin diphosphate 83.99
2pgn_A589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 82.35
2uz1_A563 Benzaldehyde lyase; thiamine diphosphate, thiamine 81.35
1v5e_A590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 80.4
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
Probab=100.00  E-value=5e-40  Score=318.51  Aligned_cols=177  Identities=21%  Similarity=0.297  Sum_probs=155.4

Q ss_pred             CccccCCCCCCCCCcchHHHHHhh-------------hHHHHHHhcCCeEEEE-cCCCCCCchHHHHHHHHHHhhcCCCC
Q psy10436         27 SNIKLSSPPSYKKGELVATRLAYG-------------IGLAKLAASNSRVIAL-DGDTKNSTFSDKLKKAFHEASQVKGK   92 (208)
Q Consensus        27 ~~~~~~~A~~~kLdNLi~i~D~~G-------------~~~~k~~a~G~~vi~V-DGhd~~~~~~~~l~~Al~~ak~~~~k   92 (208)
                      .+|++++|++++|+||++++|.++             +...+|+++||+|+.| ||||+     ++|.+|+++++...+|
T Consensus       185 ~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~~~~~~~~~~a~G~~~~~V~DG~D~-----~al~~Al~~A~~~~~~  259 (700)
T 3rim_A          185 TSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIALCEDTAARYRAYGWHVQEVEGGENV-----VGIEEAIANAQAVTDR  259 (700)
T ss_dssp             HHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTCCCCHHHHHHHHTCEEEEEECTTCH-----HHHHHHHHHHHHCCSS
T ss_pred             HHHHHHHHHHcCCCcEEEEEECCCcccccchhhccchhHHHHHHHcCCeEEEECCCCCH-----HHHHHHHHHHHHcCCC
Confidence            356778999999999999997332             3568999999999999 99998     9999999999987789


Q ss_pred             CEEEEEEeecCCCCCccCCCccccCCcCC---------------------------------------------------
Q psy10436         93 PTALIAKTFKGKDFPNIEDKEEWHGKPLG---------------------------------------------------  121 (208)
Q Consensus        93 P~vIi~~T~KG~G~~~~e~~~~~H~~~~~---------------------------------------------------  121 (208)
                      |++|+++|+||+|++++|++.+|||.+++                                                   
T Consensus       260 P~lI~~~T~kG~G~~~~e~~~~~Hg~~~~~e~~~~~~~~l~~~~~~~f~v~~~v~~~~~~~~~~g~~~~~~w~~~~~~~~  339 (700)
T 3rim_A          260 PSFIALRTVIGYPAPNLMDTGKAHGAALGDDEVAAVKKIVGFDPDKTFQVREDVLTHTRGLVARGKQAHERWQLEFDAWA  339 (700)
T ss_dssp             CEEEEEECCTTTTCTTTTTSHHHHHSCCCHHHHHHHHHHHTCCTTCSSCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEeeecCCccCCCccccCCCCCHHHHHHHHHHcCCCcccCccCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999998889985420                                                   


Q ss_pred             ---------------------------------C---------------------------------C-----ccccccc
Q psy10436        122 ---------------------------------S---------------------------------S-----SADVLKA  130 (208)
Q Consensus       122 ---------------------------------~---------------------------------~-----l~~f~~~  130 (208)
                                                       .                                 +     +..|+++
T Consensus       340 ~~~p~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~atr~a~~~~L~~l~~~~p~vv~~saDl~~s~~t~~~~~~~f~~~  419 (700)
T 3rim_A          340 RREPERKALLDRLLAQKLPDGWDADLPHWEPGSKALATRAASGAVLSALGPKLPELWGGSADLAGSNNTTIKGADSFGPP  419 (700)
T ss_dssp             HHCHHHHHHHHHHHTTCCCTTTTSSCCCCCTTSSCEEHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTCSCTTCCEESCG
T ss_pred             hhChHHHHHHHHHhccCCCcchhhhcccccccccchHHHHHHHHHHHHHHhhCCCEEEEeCCccCCCCcccccchhhccc
Confidence                                             0                                 0     1356777


Q ss_pred             C------C----CcceeeccccccHHHHHHHHHhC-CCcccE-------------EEeccccCCCcEEEEecCCccccCC
Q psy10436        131 Y------P----DRYIECFIAEQNLVGVAIGAACR-NRTVPF-------------IRMGAISQTNVNFVGSHCGVSIGED  186 (208)
Q Consensus       131 ~------P----~r~~~~GIaE~~mv~~AaGlA~~-G~~~~~-------------ir~~a~~~~~v~~v~~~~G~~~g~d  186 (208)
                      |      |    +||||+|||||+|+++|+|||++ |++|++             ||+.|++++||+++++|+|+++|+|
T Consensus       420 ~~~~~~~p~~~~~R~id~GIaE~~mv~~A~GlA~~gG~~Pv~~tF~~F~d~~~~~ir~~al~~lpvv~v~thdg~gvG~d  499 (700)
T 3rim_A          420 SISTKEYTAHWYGRTLHFGVREHAMGAILSGIVLHGPTRAYGGTFLQFSDYMRPAVRLAALMDIDTIYVWTHDSIGLGED  499 (700)
T ss_dssp             GGCCSSCCEETTCCEEECCSCHHHHHHHHHHHHHHSSCEEEEEEEGGGGGGGHHHHHHHHHHTCCCEEEEECCSGGGCTT
T ss_pred             ccccccCCcccCCceeecCccHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCC
Confidence            8      9    59999999999999999999999 775432             7788999999999999999999999


Q ss_pred             CCCCCChhHHHHhccCCCceeC
Q psy10436        187 GPSQMALEDIAMFRTIPACLVF  208 (208)
Q Consensus       187 G~TH~~ieDia~~r~lPn~~V~  208 (208)
                      |+|||++||+++||+||||+|+
T Consensus       500 G~THq~ied~a~lr~iPnl~V~  521 (700)
T 3rim_A          500 GPTHQPIEHLSALRAIPRLSVV  521 (700)
T ss_dssp             CTTTSCSSHHHHHHTSTTCEEE
T ss_pred             CCccCChhHHHHHhcCCCCEEE
Confidence            9999999999999999999985
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Back     alignment and structure
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Back     alignment and structure
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Back     alignment and structure
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Back     alignment and structure
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 208
d1r9ja1190 c.36.1.6 (A:337-526) Transketolase (TK), Pyr modul 5e-15
d1gpua2197 c.36.1.6 (A:338-534) Transketolase (TK), Pyr modul 7e-11
d1itza2192 c.36.1.6 (A:348-539) Transketolase (TK), Pyr modul 2e-10
d1itza1338 c.36.1.10 (A:10-347) Transketolase (TK), PP module 6e-06
d2r8oa1195 c.36.1.6 (A:333-527) Transketolase (TK), Pyr modul 4e-05
d2ieaa2415 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com 5e-05
d2r8oa2331 c.36.1.10 (A:2-332) Transketolase (TK), PP module 0.001
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Length = 190 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

 Score = 68.2 bits (166), Expect = 5e-15
 Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 56/188 (29%)

Query: 35  PSYKKGELVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPT 94
           P+      +ATR A    LA L  +   ++    D   S  +                  
Sbjct: 8   PTNSSA--IATRKASENCLAVLFPAIPALMGGSADLTPSNLT------------------ 47

Query: 95  ALIAKTFKGKDFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAAC 154
               +                                  RYI   + E  +  +  G   
Sbjct: 48  ----RPASANLVDFSSSS------------------KEGRYIRFGVREHAMCAILNGLDA 85

Query: 155 RNRTVPF--------------IRMGAISQTNVNFVGSHCGVSIGEDGPSQMALEDIAMFR 200
            +  +PF              +R+ AIS   V +V +H  + +GEDGP+   +E +A  R
Sbjct: 86  HDGIIPFGGTFLNFIGYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAALR 145

Query: 201 TIPACLVF 208
            +P   V 
Sbjct: 146 AMPNLQVI 153
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Length = 192 Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Length = 338 Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415 Back     information, alignment and structure
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Length = 331 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query208
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 99.97
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 99.97
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 99.97
d2r8oa2331 Transketolase (TK), PP module {Escherichia coli [T 99.76
d1itza1338 Transketolase (TK), PP module {Maize (Zea mays) [T 99.74
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 99.68
d1gpua1335 Transketolase (TK), PP module {Baker's yeast (Sacc 99.66
d1r9ja2336 Transketolase (TK), PP module {Leishmania mexicana 99.64
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 99.61
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 99.5
d2ieaa2415 Pyruvate dehydrogenase E1 component, PP module {Es 99.43
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 99.39
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 99.33
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 99.09
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 95.3
d1w85a_365 Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st 94.25
d1qs0a_407 2-oxoisovalerate dehydrogenase (E1B), PP module {P 92.93
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 90.19
d1umda_362 Branched-chain alpha-keto acid dehydrogenase, PP m 90.12
d2bfda1395 Branched-chain alpha-keto acid dehydrogenase, PP m 88.81
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 86.59
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 81.31
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 81.22
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=241.29  Aligned_cols=146  Identities=25%  Similarity=0.390  Sum_probs=120.5

Q ss_pred             cCccccCCCCCCCCCc-chHHHHHhhhHHHHHHhcCCeEEEEcCCCCCCchHHHHHHHHHHhhcCCCCCEEEEEEeecCC
Q psy10436         26 ISNIKLSSPPSYKKGE-LVATRLAYGIGLAKLAASNSRVIALDGDTKNSTFSDKLKKAFHEASQVKGKPTALIAKTFKGK  104 (208)
Q Consensus        26 ~~~~~~~~A~~~kLdN-Li~i~D~~G~~~~k~~a~G~~vi~VDGhd~~~~~~~~l~~Al~~ak~~~~kP~vIi~~T~KG~  104 (208)
                      ++++|....+.|..+. -+++|+++|+.+.++.+...+++..++|...|+.+                            
T Consensus         1 lP~~w~~~lp~~~~~~~~~aTR~a~g~~L~~la~~~p~lv~~sADL~~St~t----------------------------   52 (197)
T d1gpua2           1 LPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQLPELIGGSADLTPSNLT----------------------------   52 (197)
T ss_dssp             CCTTGGGGSCCCCTTSCCBCHHHHHHHHHHHHTTTCTTEEEEESSCHHHHTC----------------------------
T ss_pred             CCcchhhhCcccCCCCCCcchHHHHHHHHHHHHhhChhhcccccccCCcccc----------------------------
Confidence            4678888888887754 58999999999999999999999999998533321                            


Q ss_pred             CCCccCCCccccCCcCCCCcccccccCCCcceeeccccccHHHHHHHHHhCCC-cccE--------------EEeccccC
Q psy10436        105 DFPNIEDKEEWHGKPLGSSSADVLKAYPDRYIECFIAEQNLVGVAIGAACRNR-TVPF--------------IRMGAISQ  169 (208)
Q Consensus       105 G~~~~e~~~~~H~~~~~~~l~~f~~~~P~r~~~~GIaE~~mv~~AaGlA~~G~-~~~~--------------ir~~a~~~  169 (208)
                               +|.+...-...+.|+++||+||||+|||||||+++|+|||++|+ .+||              +|+.||++
T Consensus        53 ---------~~~~~~~f~~~~~~~~~~p~R~i~~GIaEq~m~~iaaGlA~~G~~~~p~~~t~~~f~~~~~~~~~~~~~~~  123 (197)
T d1gpua2          53 ---------RWKEALDFQPPSSGSGNYSGRYIRYGIREHAMGAIMNGISAFGANYKPYGGTFLNFVSYAAGAVRLSALSG  123 (197)
T ss_dssp             ---------SCTTCCEECCTTTSSEETTCCEEECCSCHHHHHHHHHHHHHHCTTCEEEEEEEHHHHGGGHHHHHHHHHHT
T ss_pred             ---------ccccccccccccccccCCCCceeecccchhhHHHHHHHHHHcCCceeEEEEeehhhhhhhHHHHHHhhhcC
Confidence                     01111111122446779999999999999999999999999996 2455              66779999


Q ss_pred             CCcEEEEecCCccccCCCCCCCChhHHHHhccCCCceeC
Q psy10436        170 TNVNFVGSHCGVSIGEDGPSQMALEDIAMFRTIPACLVF  208 (208)
Q Consensus       170 ~~v~~v~~~~G~~~g~dG~TH~~ieDia~~r~lPn~~V~  208 (208)
                      +||++|++|+|+++|+||+|||++|||++||+||||+|+
T Consensus       124 ~~v~~v~t~~g~~~g~dG~THq~ieDia~~r~iPn~~v~  162 (197)
T d1gpua2         124 HPVIWVATHDSIGVGEDGPTHQPIETLAHFRSLPNIQVW  162 (197)
T ss_dssp             CCCEEEEECCSGGGCTTCTTTCCSSHHHHHHTSSSCEEE
T ss_pred             CceEEEEecccccccccccchhhHHHHHHHhcCCCcEEE
Confidence            999999999999999999999999999999999999985
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure