Psyllid ID: psy10439

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSFLVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccccEEEcccccccccEEEEEEEEEccccccccccEEEEEEEccEEEEEEccccEEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEccccEEEEEEccEEEEEEEccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHccHccccccccccccccccccccccccccccccccccEEEEcccccccccHcHHHHHHcccccEcccccEEEEEEcccEEEEEccccccEEEEEEEccccccEccccEEEEEEcccccHHHcccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHHHcccEEccccEEEEEEccccEEEcccccccEEHHEc
Coil and Loop (DISEMBL)
MSFLVRSRLTKLASkfinptynnaflnksKIICLHTTNILDAqqeikmpslsptmteGTIVKWLKkegdavapgdvlcEIQTDKAVMSFETEEEGILAKilvpenttdvkVGTLIAVMVEEGedwqnvsvsatspsatasassasppppppapssggsvpgqiinmpslsptmteGTIVKWLKkegdavvpgdvlcEIQTDKAVMSFETEEEGILAKIL
Flexible Loop (DISEMBL)
MSFLVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQeikmpslsptMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGIlakilvpenttdvKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQtdkavmsfeteeegilakil
Low Complexity Region (SEG)
MSFLVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNvsvsatspsatasassasppppppapssggsvpgQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL
Disordered region (IsUnstruct)
****VRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKM**L*PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDW************************************************TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSF************
Disordered Region (DISOPRED)
*****************************************AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGED*****************************SSGGSV****************GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL
Disordered Region (DISEMBL)
MSFLVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQN******************************SVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL
Disordered Region (DISPRO)
***************************************LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE**************************************QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSFLVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q0WQF7	637	Dihydrolipoyllysine-resid	no	N/A	0.812	0.279	0.491	9e-43
P36413	635	Dihydrolipoyllysine-resid	yes	N/A	0.799	0.275	0.464	6e-38
Q8BMF4	642	Dihydrolipoyllysine-resid	yes	N/A	0.821	0.280	0.460	2e-34
P08461	632	Dihydrolipoyllysine-resid	yes	N/A	0.821	0.284	0.468	2e-34
P10515	647	Dihydrolipoyllysine-resid	yes	N/A	0.817	0.276	0.431	3e-33
P22439	501	Pyruvate dehydrogenase pr	no	N/A	0.506	0.221	0.524	4e-28
O66119	440	Dihydrolipoyllysine-resid	yes	N/A	0.410	0.204	0.644	4e-28
Q8BKZ9	501	Pyruvate dehydrogenase pr	no	N/A	0.442	0.193	0.561	4e-27
Q19749	507	Dihydrolipoyllysine-resid	yes	N/A	0.680	0.293	0.421	7e-27
O00330	501	Pyruvate dehydrogenase pr	no	N/A	0.484	0.211	0.504	8e-27

>sp|Q0WQF7|OPD21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2

 Score =  173 bits (438), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/187 (49%), Positives = 119/187 (63%), Gaps = 9/187 (4%)

Query: 42  AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
           +Q  + MP+LSPTM+ G +VKW+KKEGD V  GDVLCEI+TDKA + FE++EEG LAKIL
Sbjct: 84  SQTVLAMPALSPTMSHGNVVKWMKKEGDKVEVGDVLCEIETDKATVEFESQEEGFLAKIL 143

Query: 102 VPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPP---------A 152
           V E + D+ V   IA+MVEE +D +NV  +          +SA     P           
Sbjct: 144 VTEGSKDIPVNEPIAIMVEEEDDIKNVPATIEGGRDGKEETSAHQVMKPDESTQQKSSIQ 203

Query: 153 PSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEE 212
           P +    P  ++ MP+LSPTM +G I KW KKEGD +  GDV+ EI+TDKA + FE+ EE
Sbjct: 204 PDASDLPPHVVLEMPALSPTMNQGNIAKWWKKEGDKIEVGDVIGEIETDKATLEFESLEE 263

Query: 213 GILAKIL 219
           G LAKIL
Sbjct: 264 GYLAKIL 270

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=1 SV=2

 Score =  157 bits (396), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 120/183 (65%), Gaps = 8/183 (4%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEE-EGILAKILV 102
           +EI MP+LSP+MTEG IV+W KKEGD +  GDV+ E++TDKA M F+ E+  G LAKIL+
Sbjct: 84  KEITMPALSPSMTEGNIVQWKKKEGDQIKAGDVIAEVETDKATMDFQYEDGNGYLAKILI 143

Query: 103 PENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASAS---SASPPPPPPAP-SSGGS 158
           PE T  +++   IA++V + ED ++ +V    PS+ AS++     +P P   AP  S  +
Sbjct: 144 PEGTKGIEINKPIAIIVSKKEDIES-AVKNYKPSSQASSTPVQEEAPKPKQEAPKKSTKT 202

Query: 159 VPGQ-IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEE-EGILA 216
            P   ++ MP+LSP+M  G I  W KKEGD +  GD + E++TDKA M F+ E+  G LA
Sbjct: 203 YPAHKVVGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGYLA 262

Query: 217 KIL 219
           KIL
Sbjct: 263 KIL 265

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/189 (46%), Positives = 126/189 (66%), Gaps = 9/189 (4%)

Query: 40  LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
           L   Q++ +PSLSPTM  GTI +W KKEG+ ++ GD++ E++TDKA + FE+ EE  +AK
Sbjct: 87  LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLEECYMAK 146

Query: 100 ILVPENTTDVKVGTLIAVMVEEGED---WQNVSVS-----ATSPSATASASSASPPPPPP 151
           ILVPE T DV VG++I + VE+ +D   ++N ++      A   +  A+ + A+ P  P 
Sbjct: 147 ILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDLAAAAAPQAAPAAAPAPAAAPAAPS 206

Query: 152 APSSGGSVPGQI-INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETE 210
           A + G S P  + I +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +
Sbjct: 207 ASAPGSSYPTHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQ 266

Query: 211 EEGILAKIL 219
           EEG LAKIL
Sbjct: 267 EEGYLAKIL 275

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/188 (46%), Positives = 127/188 (67%), Gaps = 8/188 (4%)

Query: 40  LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
           L   Q++ +PSLSPTM  GTI +W KKEG+ ++ GD++ E++TDKA + FE+ EE  +AK
Sbjct: 79  LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLEECYMAK 138

Query: 100 ILVPENTTDVKVGTLIAVMVEEGED---WQNVSVS----ATSPSATASASSASPPPPPPA 152
           ILVPE T DV VG++I + VE+ +D   ++N ++     AT  +   +A+ A+ P  P A
Sbjct: 139 ILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDSATAATQAAPAPAAAPAAAPAAPSA 198

Query: 153 PSSGGSVPGQI-INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEE 211
            + G S P  + I +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +E
Sbjct: 199 SAPGSSYPVHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 258

Query: 212 EGILAKIL 219
           EG LAKIL
Sbjct: 259 EGYLAKIL 266

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 121/190 (63%), Gaps = 11/190 (5%)

Query: 40  LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
           L   Q++ +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AK
Sbjct: 88  LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAK 147

Query: 100 ILVPENTTDVKVGTLIAVMVEEGED---WQNVSVSATSPSATASASSASPPPPPPAPSSG 156
           ILV E T DV +G +I + V + ED   ++N ++ +++     +A + +P      P+  
Sbjct: 148 ILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAAPTPQAAPAPTPAATASPPTPS 207

Query: 157 GSVPG-------QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFET 209
              PG       Q++ +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE 
Sbjct: 208 AQAPGSSYPPHMQVL-LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEV 266

Query: 210 EEEGILAKIL 219
           +EEG LAKIL
Sbjct: 267 QEEGYLAKIL 276

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P22439|ODPX_BOVIN Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 86/122 (70%), Gaps = 11/122 (9%)

Query: 34  LHTTNILDAQQ-EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE 92
            H+T  L A   +I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  
Sbjct: 46  FHSTQWLRADPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDAS 105

Query: 93  EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPA 152
           ++GILAKI+V E + ++++G+LI ++VEEGEDW++V +    P  T       PPPP   
Sbjct: 106 DDGILAKIVVAEGSKNIRLGSLIGLLVEEGEDWKHVEI----PKDTG------PPPPAAK 155

Query: 153 PS 154
           PS
Sbjct: 156 PS 157

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Bos taurus (taxid: 9913)

>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 72/90 (80%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E+KMP+LSPTMTEGT+ KWL KEGDAV  GD+L EI+TDKA+M FET + GI+AKILVPE
Sbjct: 4   EVKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPE 63

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATS 134
            + ++ VG +IAVM E GED   V+ SA+S
Sbjct: 64  GSENIAVGQVIAVMAEAGEDVSQVAASASS 93

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8BKZ9|ODPX_MOUSE Pyruvate dehydrogenase protein X component, mitochondrial OS=Mus musculus GN=Pdhx PE=2 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 78/98 (79%), Gaps = 1/98 (1%)

Query: 34  LHTTNILDAQQ-EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE 92
            H+T +L A   ++ MPSLSPTM +G IVKWL+KEG+AV+ GD LCEI+TDKAV++ +  
Sbjct: 46  FHSTQLLQADPIKVLMPSLSPTMEQGNIVKWLRKEGEAVSAGDSLCEIETDKAVVTLDAN 105

Query: 93  EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSV 130
           ++GILAKI+V E   ++++G+LIA+MVEEGEDW+ V +
Sbjct: 106 DDGILAKIVVEEGAKNIQLGSLIALMVEEGEDWKQVEI 143

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Mus musculus (taxid: 10090)

>sp|Q19749|ODP2_CAEEL Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Caenorhabditis elegans GN=F23B12.5 PE=1 SV=1

 Score =  120 bits (301), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 91/152 (59%), Gaps = 3/152 (1%)

Query: 21  YNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEI 80
           Y NA     K + L+++  L     + +P+LSPTM  GT+V W KKEGD ++ GD+LCEI
Sbjct: 55  YPNAAAFSIKQVRLYSSGNLPKHNRVALPALSPTMELGTVVSWQKKEGDQLSEGDLLCEI 114

Query: 81  QTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGED---WQNVSVSATSPSA 137
           +TDKA M FET EEG LAKIL+ E + DV +G L+ ++V+   D   +++      S   
Sbjct: 115 ETDKATMGFETPEEGYLAKILIQEGSKDVPIGKLLCIIVDNEADVAAFKDFKDDGASSGG 174

Query: 138 TASASSASPPPPPPAPSSGGSVPGQIINMPSL 169
           +A A+  +P P  PA SS  S P Q+   PS+
Sbjct: 175 SAPAAEKAPEPAKPAASSQPSPPAQMYQAPSV 206

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/117 (50%), Positives = 81/117 (69%), Gaps = 11/117 (9%)

Query: 34  LHTTNILDAQQ-EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE 92
            H+T  L     +I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  
Sbjct: 46  FHSTQWLRGDPIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDAS 105

Query: 93  EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPP 149
           ++GILAKI+V E + ++++G+LI ++VEEGEDW++V +               PPPP
Sbjct: 106 DDGILAKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVEIP----------KDVGPPPP 152

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
328697856	592	PREDICTED: dihydrolipoyllysine-residue a	0.981	0.363	0.614	3e-68
322790253	618	hypothetical protein SINV_09465 [Solenop	1.0	0.354	0.498	7e-58
307183310	588	Dihydrolipoyllysine-residue acetyltransf	1.0	0.372	0.531	5e-57
332024671	585	Dihydrolipoyllysine-residue acetyltransf	0.990	0.370	0.545	2e-56
242011723	539	Lipoamide acyltransferase component of b	0.735	0.298	0.662	9e-55
340729384	597	PREDICTED: LOW QUALITY PROTEIN: dihydrol	0.963	0.353	0.523	1e-54
307206702	1490	Dihydrolipoyllysine-residue acetyltransf	0.894	0.131	0.555	1e-54
383855506	587	PREDICTED: dihydrolipoyllysine-residue a	0.876	0.327	0.567	4e-51
350417800	601	PREDICTED: dihydrolipoyllysine-residue a	0.876	0.319	0.531	1e-47
380019888	621	PREDICTED: LOW QUALITY PROTEIN: dihydrol	0.876	0.309	0.528	9e-47

>gi|328697856|ref|XP_001945646.2| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Acyrthosiphon pisum]

 Score =  263 bits (673), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 134/218 (61%), Positives = 165/218 (75%), Gaps = 3/218 (1%)

Query: 4   LVRSRLTK-LASKFINPTYNNAFLNKSKIICLHTTNILDAQ-QEIKMPSLSPTMTEGTIV 61
           L RS L   L   ++  T   +F N  KI+C+HT+++L+ + QEI MPSLSPTMTEG IV
Sbjct: 5   LFRSALKGGLHKNYLRKTLCASF-NLEKILCIHTSSLLNVKGQEINMPSLSPTMTEGNIV 63

Query: 62  KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE 121
           KWLKKEGD ++ GDVLCEIQTDKAVMSFETEEEG+LAKILVP++  ++KVG+LIA+MV E
Sbjct: 64  KWLKKEGDKISAGDVLCEIQTDKAVMSFETEEEGVLAKILVPDDAKEIKVGSLIALMVAE 123

Query: 122 GEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKW 181
           GEDW++V        A+ + +S    P     ++GG+ PG  +NMPSLSPTM+EGTI+KW
Sbjct: 124 GEDWKSVETPDAKDVASIATNSQEDEPQESEQTTGGNTPGIELNMPSLSPTMSEGTIIKW 183

Query: 182 LKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
            KK GD V  GDVLC+IQTDKAVMSFETEEEG LAKIL
Sbjct: 184 HKKPGDKVSAGDVLCDIQTDKAVMSFETEEEGTLAKIL 221

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790253|gb|EFZ15252.1| hypothetical protein SINV_09465 [Solenopsis invicta]

 Score =  229 bits (584), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 126/253 (49%), Positives = 160/253 (63%), Gaps = 34/253 (13%)

Query: 1   MSFLVRSRLTKLASKFINPTYNNAFLN-KSKIICLHTTNILDAQ---------------- 43
           M+ L+RS+   L+ K+ N       +  K + +C HT++ILD                  
Sbjct: 1   MAHLIRSKFVLLSLKYANRVAPRITVPLKYQRLCFHTSDILDVYANFNLQSKDDEEIVFF 60

Query: 44  ----QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
               +E+ MPSLSPTM  GTIVKW KKEGD + PGD + +IQTDKAV++ E ++EGI+AK
Sbjct: 61  LVMGKELLMPSLSPTMESGTIVKWFKKEGDKINPGDAIADIQTDKAVVTMEFDDEGIMAK 120

Query: 100 ILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPP-----PAPS 154
           I++PE T D+KVGTLIA+ VE  EDW+ V + A S  A+++  S++ P PP     P P 
Sbjct: 121 IMIPEGTKDIKVGTLIALTVEADEDWKTVEMPAGSAQASSTTPSSAEPSPPVTKAEPPPG 180

Query: 155 SGGSVPG--------QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS 206
              S+          Q I MP+LSPTMT GTIVKWLKKEGD + PGD L EIQTDKAVMS
Sbjct: 181 QYDSLINIDYNLFLKQNIAMPALSPTMTTGTIVKWLKKEGDEIQPGDALAEIQTDKAVMS 240

Query: 207 FETEEEGILAKIL 219
           FE EEEGILAKIL
Sbjct: 241 FELEEEGILAKIL 253

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183310|gb|EFN70179.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Camponotus floridanus]

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/222 (53%), Positives = 155/222 (69%), Gaps = 3/222 (1%)

Query: 1   MSFLVRSRLTKLASKFINPTYNNAFLN-KSKIICLHTTNILDAQ-QEIKMPSLSPTMTEG 58
           M+ ++RS+L  L+ K+ +       +  K + +C HTT ILD + +E+ MPSLSPTM  G
Sbjct: 1   MAHIIRSKLMLLSLKYTSCVAPRILVPLKHQRLCFHTTRILDVKGKELLMPSLSPTMETG 60

Query: 59  TIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118
           TIVKW KKEGD++ PGD + +IQTDKA+++ E ++EG+LAKI+VPE T D+KVGTLIA+ 
Sbjct: 61  TIVKWFKKEGDSINPGDAIADIQTDKAIVTMEFDDEGVLAKIIVPEGTKDIKVGTLIALT 120

Query: 119 VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQI-INMPSLSPTMTEGT 177
           VE  EDW++V V   S       ++AS    P         PGQ  I MP+LSPTMT GT
Sbjct: 121 VEADEDWKSVEVPDKSVEPAPKIAAASVEKSPAVTKVEAPPPGQQNIPMPALSPTMTTGT 180

Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I+KWLK+EGD + PGD L +IQTDKAVM+FE EEEG+LAKIL
Sbjct: 181 IIKWLKQEGDEIQPGDALADIQTDKAVMTFELEEEGVLAKIL 222

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024671|gb|EGI64864.1| Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Acromyrmex echinatior]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/222 (54%), Positives = 160/222 (72%), Gaps = 5/222 (2%)

Query: 1   MSFLVRSRLTKLASKFINPTYNNAFLN-KSKIICLHTTNILDA-QQEIKMPSLSPTMTEG 58
           M+ ++RS+   L+ K+ NP   +  +  K + +C HT+ ILD   +++ MPSLSPTM  G
Sbjct: 1   MAHILRSKFMHLSLKYANPIALHVPVPLKYQRLCFHTSTILDVIGKKLSMPSLSPTMESG 60

Query: 59  TIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118
           TIVKWLKKEGD + PGD + EIQTDKA+++ E ++EG++AKI+VPE T D+KVGTLIA+ 
Sbjct: 61  TIVKWLKKEGDKIEPGDAIAEIQTDKAIVTMEFDDEGVMAKIIVPEGTKDIKVGTLIALT 120

Query: 119 VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQI-INMPSLSPTMTEGT 177
           VE  E+W+ V + A    A+++A S++   PP   +     PGQ  I MP+LSPTMT GT
Sbjct: 121 VEADENWKTVEMPADLAEASSAAPSSTEASPP--VTKAEPPPGQQNIAMPALSPTMTTGT 178

Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           IVKWLKKEGD + PGD L +IQTDKAVMSFE EEEG+LAKIL
Sbjct: 179 IVKWLKKEGDEIQPGDALADIQTDKAVMSFELEEEGVLAKIL 220

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011723|ref|XP_002426596.1| Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Pediculus humanus corporis] gi|212510745|gb|EEB13858.1| Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Pediculus humanus corporis]

 Score =  219 bits (557), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 118/178 (66%), Positives = 131/178 (73%), Gaps = 17/178 (9%)

Query: 48  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 107
           MPSLSPTM EG IVKWLKKEGD V PGDVLC+I+TDKAV+S ETEEEGILAKILVPEN +
Sbjct: 1   MPSLSPTMMEGKIVKWLKKEGDTVNPGDVLCDIETDKAVVSMETEEEGILAKILVPENVS 60

Query: 108 DVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQ----- 162
            +KVG+LIA+MV  GEDW+NV V ++S S   +             SSGG+         
Sbjct: 61  QIKVGSLIALMVPVGEDWKNVDVKSSSLSDNDNNE-----------SSGGNDLKHDGPEP 109

Query: 163 -IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
            +I MPSLSPTMT G IVKWLK EG  V  GDVLCEIQTDKAVMS ETEEEGILAKIL
Sbjct: 110 IVIKMPSLSPTMTSGIIVKWLKSEGSTVSAGDVLCEIQTDKAVMSLETEEEGILAKIL 167

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729384|ref|XP_003402984.1| PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Bombus terrestris]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/235 (52%), Positives = 160/235 (68%), Gaps = 24/235 (10%)

Query: 1   MSFLVRSRLTKLASKFINPTYNNAFLN-KSKIICLHTTNILDAQ-QEIKMPSLSPTMTEG 58
           M+ ++  R+  L+ K  N      F+  K + +C HT+ +LD   +E+ MPSLSPTM  G
Sbjct: 1   MAQMMIPRIALLSIKNSNRLIPRIFVPLKYQRLCFHTSWVLDVTGKEVLMPSLSPTMESG 60

Query: 59  TIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM 118
           TIVKWLKKEGD + PGD L +IQTDKAV++ E ++E +LAKI+V E T D+KVGTLIA+ 
Sbjct: 61  TIVKWLKKEGDKIEPGDALADIQTDKAVVTMEVDDESVLAKIIVQEGTKDIKVGTLIALT 120

Query: 119 VEEGEDWQNV----SVSAT---------SPSATASASSASPPPPPPAPSSGGSVPGQI-I 164
           V+  EDW++V    S+S T         +P+AT  AS+AS   PPP        PGQ  +
Sbjct: 121 VDVDEDWKSVEMPDSISTTPAAPSPTPSAPTATTVASTASTSAPPP--------PGQTNV 172

Query: 165 NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +MP+LSPTMT GTIVKWLKKEG+ + PGD L EIQTDKAVM+FE E+EG+ AKIL
Sbjct: 173 SMPALSPTMTTGTIVKWLKKEGEEIEPGDALAEIQTDKAVMTFEVEDEGVFAKIL 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206702|gb|EFN84657.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Harpegnathos saltator]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 115/207 (55%), Positives = 143/207 (69%), Gaps = 11/207 (5%)

Query: 17   INPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDV 76
            +N       + KSK++ +    +L       MPSLSPTM  GTIVKW+KKEGD + PGD 
Sbjct: 917  LNQILAKQVMEKSKMVAVKGKEML-------MPSLSPTMETGTIVKWIKKEGDKIEPGDA 969

Query: 77   LCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSV--SATS 134
            + +IQTDKAV++ E E+E ILAKI+VPE T DVKVGTLIA+ VE  EDW+ V +   AT+
Sbjct: 970  VADIQTDKAVVTMEFEDESILAKIIVPEGTKDVKVGTLIALTVEIDEDWKTVEMPDGATA 1029

Query: 135  PSATASASSASPPPPPPAPSSGGSVP--GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPG 192
            P A+    +A+ PP  PA +     P   Q I MP+LSPTMT GTIVKWLK+EGD + PG
Sbjct: 1030 PEASVDKPAAAQPPSTPATTQAAEPPPGQQNIPMPALSPTMTTGTIVKWLKQEGDEIQPG 1089

Query: 193  DVLCEIQTDKAVMSFETEEEGILAKIL 219
            D L EIQTDKAVM+FE E+EG+LAKIL
Sbjct: 1090 DALAEIQTDKAVMTFELEDEGVLAKIL 1116

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855506|ref|XP_003703251.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Megachile rotundata]

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 145/194 (74%), Gaps = 2/194 (1%)

Query: 28  KSKIICLHTTNILDAQ-QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV 86
           K +  C HT+ +LD + +E+ MPSLSPTM  GTI+KWLKKEGD +  GD + +IQTDKAV
Sbjct: 29  KYQRTCFHTSWVLDVKGKELLMPSLSPTMESGTIIKWLKKEGDKIEAGDAIADIQTDKAV 88

Query: 87  MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASP 146
           ++ E +++ ILAKILV E T D+K+GTLIA+ V+ GEDW++V +  ++P+A  S  +++P
Sbjct: 89  VTMEGDDDSILAKILVQEGTKDIKIGTLIALTVDPGEDWKSVEMPDSAPAAAPSMPASAP 148

Query: 147 PPPPPAPSSGGSVPGQ-IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM 205
              PPA +     PGQ  + MP+LSPTMT GTIVKWLKKEGD++ PGD L EIQTDKAVM
Sbjct: 149 ASVPPASAVAEPPPGQNNVAMPALSPTMTTGTIVKWLKKEGDSIEPGDALAEIQTDKAVM 208

Query: 206 SFETEEEGILAKIL 219
           +FE E+E I AKIL
Sbjct: 209 TFEFEDEAIFAKIL 222

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417800|ref|XP_003491601.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Bombus impatiens]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 111/209 (53%), Positives = 143/209 (68%), Gaps = 17/209 (8%)

Query: 28  KSKIICLHTTNILDAQ-QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV 86
           K + +C HT+ +LD   +E+ MPSLSPTM  GTIVKWLKKEGD + PGD L +IQTDKAV
Sbjct: 29  KYQRLCFHTSWVLDVTGREVLMPSLSPTMESGTIVKWLKKEGDKIEPGDALADIQTDKAV 88

Query: 87  MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSV---------------S 131
           ++ E ++E +LAKI+V E T D+KVGTLIA+ V+  EDW++V +               S
Sbjct: 89  VTMEVDDESVLAKIIVQEGTKDIKVGTLIALTVDVDEDWKSVEMPDSISTAPAAPSPTPS 148

Query: 132 ATSPSATASASSASPPPPPPAPSSGGSVPGQI-INMPSLSPTMTEGTIVKWLKKEGDAVV 190
           A + +     + A+    P A +S    PGQ  ++MP+LSPTMT GTIVKWLKKEGD + 
Sbjct: 149 APAAATATPTAPAAATATPTASTSAPPPPGQTNVSMPALSPTMTTGTIVKWLKKEGDEIE 208

Query: 191 PGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           PGD L EIQTDKAVM+FE E+EG+ AKIL
Sbjct: 209 PGDALAEIQTDKAVMTFEIEDEGVFAKIL 237

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019888|ref|XP_003693833.1| PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Apis florea]

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 139/212 (65%), Gaps = 20/212 (9%)

Query: 28  KSKIICLHTTNILDAQ-QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV 86
           K + +C HT+ + D Q + I MPSLSPTM +GTIVKW KKEGD +  GD + +IQTDKAV
Sbjct: 29  KYQRLCFHTSWVFDVQGKSILMPSLSPTMEKGTIVKWFKKEGDKIEAGDAVADIQTDKAV 88

Query: 87  MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNV----SVSATSPSATASAS 142
           ++ E E+E ILAKI+V E   D+KVGTLIA+ V+  EDW++V    +VS  SP   +S +
Sbjct: 89  VTLELEDESILAKIIVGEGIQDIKVGTLIALTVDVDEDWKSVEMPENVSVASPVTASSTT 148

Query: 143 SASPPPPPPAPSSGGSV--------------PGQI-INMPSLSPTMTEGTIVKWLKKEGD 187
                P     S   S               PGQ  I MP+LSPTMT GTIVKWLKKEG+
Sbjct: 149 GPPSSPTSSPSSPISSPSSPPSPPSTPVQTPPGQTNIGMPALSPTMTSGTIVKWLKKEGE 208

Query: 188 AVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           A+ PGD + EIQTDKAVM+FE E+E ILAKIL
Sbjct: 209 AIEPGDAVAEIQTDKAVMTFEIEDESILAKIL 240

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
UNIPROTKB|E1C6N5	632	DLAT "Uncharacterized protein"	0.383	0.132	0.535	6.6e-35
UNIPROTKB|F1SMB2	647	DLAT "Dihydrolipoyllysine-resi	0.365	0.123	0.525	1.5e-18
RGD|619859	632	Dlat "dihydrolipoamide S-acety	0.817	0.283	0.417	8.3e-34
UNIPROTKB|E2RQS9	647	DLAT "Uncharacterized protein"	0.365	0.123	0.537	3.4e-19
UNIPROTKB|P10515	647	DLAT "Dihydrolipoyllysine-resi	0.365	0.123	0.537	1.2e-18
MGI|MGI:2385311	642	Dlat "dihydrolipoamide S-acety	0.817	0.278	0.415	2.5e-33
UNIPROTKB|F1N690	647	DLAT "Dihydrolipoyllysine-resi	0.365	0.123	0.525	3.1e-18
DICTYBASE|DDB_G0277847	635	pdhC "dihydrolipoyllysine-resi	0.908	0.313	0.390	6.5e-33
ZFIN|ZDB-GENE-030131-2921	652	dlat "dihydrolipoamide S-acety	0.365	0.122	0.5	1.8e-17
UNIPROTKB|E2RM20	501	PDHX "Uncharacterized protein"	0.429	0.187	0.589	7.3e-26

UNIPROTKB|E1C6N5 DLAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 241 (89.9 bits), Expect = 6.6e-35, Sum P(2) = 6.6e-35
 Identities = 45/84 (53%), Positives = 61/84 (72%)

Query:    40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
             L A Q++ +P+LSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  LAK
Sbjct:    67 LPAHQKVALPALSPTMQMGTIARWEKKEGDKIGEGDLIAEVETDKATVGFESLEECYLAK 126

Query:   100 ILVPENTTDVKVGTLIAVMVEEGE 123
             ILVPE T DV +G +I + VE+ E
Sbjct:   127 ILVPEGTRDVPIGAIICITVEKPE 150

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SMB2 DLAT "Dihydrolipoyllysine-residue acetyltransferase" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 42/80 (52%), Positives = 61/80 (76%)

Query:    45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKIL+PE
Sbjct:   220 QVVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILIPE 279

Query:   105 NTTDVKVGTLIAVMVEEGED 124
              T DV +GT + ++VE+  D
Sbjct:   280 GTRDVPLGTPLCIIVEKEAD 299

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

RGD|619859 Dlat "dihydrolipoamide S-acetyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 373 (136.4 bits), Expect = 8.3e-34, P = 8.3e-34
 Identities = 79/189 (41%), Positives = 111/189 (58%)

Query:    40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
             L   Q++ +PSLSPTM  GTI +W KKEG+ ++ GD++ E++TDKA + FE+ EE  +AK
Sbjct:    79 LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLEECYMAK 138

Query:   100 ILVPENTTDVKVGTLIAVMVEEGED---WQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156
             ILVPE T DV VG++I + VE+ +D   ++N                             
Sbjct:   139 ILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDSATAATQAAPAPAAAPAAAPAAPSA 198

Query:   157 XXXXX------QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETE 210
                        QI+ +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +
Sbjct:   199 SAPGSSYPVHMQIV-LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQ 257

Query:   211 EEGILAKIL 219
             EEG LAKIL
Sbjct:   258 EEGYLAKIL 266

GO:0000166 "nucleotide binding" evidence=TAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030431 "sleep" evidence=IEP

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA;TAS

UNIPROTKB|E2RQS9 DLAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.4e-19, P = 3.4e-19
 Identities = 43/80 (53%), Positives = 62/80 (77%)

Query:    45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKIL+PE
Sbjct:   220 QVVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILIPE 279

Query:   105 NTTDVKVGTLIAVMVEEGED 124
              T DV +GT + ++VE+ ED
Sbjct:   280 GTRDVPLGTPLCIIVEKEED 299

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

UNIPROTKB|P10515 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 234 (87.4 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 43/80 (53%), Positives = 61/80 (76%)

Query:    45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE
Sbjct:   220 QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 279

Query:   105 NTTDVKVGTLIAVMVEEGED 124
              T DV +GT + ++VE+  D
Sbjct:   280 GTRDVPLGTPLCIIVEKEAD 299

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=NAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=NAS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 79/190 (41%), Positives = 111/190 (58%)

Query:    40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
             L   Q++ +PSLSPTM  GTI +W KKEG+ ++ GD++ E++TDKA + FE+ EE  +AK
Sbjct:    87 LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLEECYMAK 146

Query:   100 ILVPENTTDVKVGTLIAVMVEEGED---WQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 156
             ILVPE T DV VG++I + VE+ +D   ++N                             
Sbjct:   147 ILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDLAAAAAPQAAPAAAPAPAAAPAAPS 206

Query:   157 XXX-------XXQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFET 209
                         QI+ +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE 
Sbjct:   207 ASAPGSSYPTHMQIV-LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEV 265

Query:   210 EEEGILAKIL 219
             +EEG LAKIL
Sbjct:   266 QEEGYLAKIL 275

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IC

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;TAS

UNIPROTKB|F1N690 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex" [Bos taurus (taxid:9913)]

 Score = 230 (86.0 bits), Expect = 3.1e-18, P = 3.1e-18
 Identities = 42/80 (52%), Positives = 60/80 (75%)

Query:    45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
             ++ +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +EEG LAKIL+PE
Sbjct:   220 QVLLPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEVQEEGYLAKILIPE 279

Query:   105 NTTDVKVGTLIAVMVEEGED 124
              T DV +GT + ++VE+  D
Sbjct:   280 GTRDVPLGTPLCIIVEKEAD 299

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0277847 pdhC "dihydrolipoyllysine-residue acetyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 365 (133.5 bits), Expect = 6.5e-33, P = 6.5e-33
 Identities = 82/210 (39%), Positives = 117/210 (55%)

Query:    16 FINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGD 75
             F +P+ +N F   S+I  L+  +     +EI MP+LSP+MTEG IV+W KKEGD +  GD
Sbjct:    61 FSSPSSSNVF---SEI--LNKRSYSSKGKEITMPALSPSMTEGNIVQWKKKEGDQIKAGD 115

Query:    76 VLCEIQTDKAVMSFETEE-EGILAKILVPENTTDVKVGTLIAVMVEEGEDWQ----NXXX 130
             V+ E++TDKA M F+ E+  G LAKIL+PE T  +++   IA++V + ED +    N   
Sbjct:   116 VIAEVETDKATMDFQYEDGNGYLAKILIPEGTKGIEINKPIAIIVSKKEDIESAVKNYKP 175

Query:   131 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIINMPSLSPTMTEGTIVKWLKKEGDAVV 190
                                            +++ MP+LSP+M  G I  W KKEGD + 
Sbjct:   176 SSQASSTPVQEEAPKPKQEAPKKSTKTYPAHKVVGMPALSPSMETGGIASWTKKEGDQIK 235

Query:   191 PGDVLCEIQTDKAVMSFETEE-EGILAKIL 219
              GD + E++TDKA M F+ E+  G LAKIL
Sbjct:   236 AGDAIAEVETDKATMDFQYEDGNGYLAKIL 265

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030131-2921 dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Danio rerio (taxid:7955)]

 Score = 223 (83.6 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 40/80 (50%), Positives = 60/80 (75%)

Query:    45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKI++ E
Sbjct:   220 KVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIMISE 279

Query:   105 NTTDVKVGTLIAVMVEEGED 124
              T DV +GT + ++VE+  D
Sbjct:   280 GTRDVPLGTPLCIIVEKESD 299

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA;IMP

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IMP

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0009583 "detection of light stimulus" evidence=IMP

UNIPROTKB|E2RM20 PDHX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 297 (109.6 bits), Expect = 7.3e-26, P = 7.3e-26
 Identities = 56/95 (58%), Positives = 77/95 (81%)

Query:    34 LHTTNILDAQQ-EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETE 92
             LH+T  L A   +I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  
Sbjct:    46 LHSTQRLRADPIKILMPSLSPTMEEGNIVKWLKKEGEAVSTGDALCEIETDKAVVTLDAS 105

Query:    93 EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQN 127
             ++GILAKI+V E + ++++G+LI ++VEEGEDW++
Sbjct:   106 DDGILAKIVVEEGSKNIRLGSLIGLLVEEGEDWKH 140

GO:0005739 "mitochondrion" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4ULG1	ODP2_RICFE	2, ., 3, ., 1, ., 1, 2	0.5096	0.4474	0.2378	yes	N/A
O66119	ODP2_ZYMMO	2, ., 3, ., 1, ., 1, 2	0.6444	0.4109	0.2045	yes	N/A
Q92HK7	ODP2_RICCN	2, ., 3, ., 1, ., 1, 2	0.5192	0.4474	0.2378	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	1e-45
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	2e-40
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	9e-40
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	3e-37
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	6e-32
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	2e-31
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	7e-30
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-25
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	5e-25
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	9e-25
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	4e-24
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	7e-24
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	1e-23
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	8e-22
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	1e-21
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	6e-21
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-20
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-18
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	5e-18
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	2e-16
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	8e-16
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	3e-15
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	8e-15
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-13
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	6e-13
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	7e-13
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	9e-13
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-11
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	4e-11
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-10
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	6e-10
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-09
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	4e-08
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	6e-08
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	2e-07
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	1e-05
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	1e-05
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	4e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	1e-04
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	4e-04
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	0.003
PRK12999	1146	PRK12999, PRK12999, pyruvate carboxylase; Reviewed	0.004

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  156 bits (397), Expect = 1e-45
 Identities = 65/137 (47%), Positives = 82/137 (59%), Gaps = 7/137 (5%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           EI MP+LSPTM EGT+ KWLKKEGD V  GDV+ EI+TDKA M  E  +EG L KILVPE
Sbjct: 4   EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPE 63

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
            T  VKV T IAV++EEGE     S +  +P+A A A++A+P     A +   +      
Sbjct: 64  GTEGVKVNTPIAVLLEEGES---ASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAP 120

Query: 165 NMP----SLSPTMTEGT 177
             P    +  P +  GT
Sbjct: 121 AAPAAEVAADPDIPAGT 137

Length = 464

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  143 bits (361), Expect = 2e-40
 Identities = 65/118 (55%), Positives = 75/118 (63%), Gaps = 9/118 (7%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +I MP+LSPTMT G + KWLKKEGD V PGDV+ EI+TDKA M FE  EEG LAKILVPE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 105 NTTDVKVGTLIAVMVEEGED---------WQNVSVSATSPSATASASSASPPPPPPAP 153
            T DV V   IAV+VEE ED          ++ +  A  PS  A  +  S P P PAP
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAP 118

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  142 bits (360), Expect = 9e-40
 Identities = 62/114 (54%), Positives = 75/114 (65%)

Query: 40  LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
           L   QEI MPSLSPTMTEG I +WLKKEGD V+PG+VLCE++TDKA +  E  EEG LAK
Sbjct: 109 LPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAK 168

Query: 100 ILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAP 153
           I+  +   ++KVG +IA+ VEE ED         S SA  +A  A P PPPP  
Sbjct: 169 IVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKE 222

Length = 539

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  133 bits (338), Expect = 3e-37
 Identities = 45/117 (38%), Positives = 62/117 (52%), Gaps = 4/117 (3%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E KMP L   MTEG IV+WL K GD V  G  L E++TDKA +   +   G +AK+LV E
Sbjct: 4   EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEE 63

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
               V VG++IAV+ EEGE     + +A   +  A A   +P     A ++  +   
Sbjct: 64  GDV-VPVGSVIAVIEEEGEA---EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAA 116

Length = 411

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  110 bits (278), Expect = 6e-32
 Identities = 45/75 (60%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
            EIKMP L  +MTEGTIV+WL KEGD+V  GDVL E++TDKA +  E    G+LAKILV 
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 104 ENTTDVKVGTLIAVM 118
           E  T V VG +IAV+
Sbjct: 61  EGDT-VPVGQVIAVI 74

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  117 bits (296), Expect = 2e-31
 Identities = 55/114 (48%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 42  AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
              EIKMP L  TMTEGTIV+WLKK GD V  GDVL E++TDKA M     + G+LAKIL
Sbjct: 1   MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 102 VPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSS 155
           V E  T V VG +IA + EEG D    + +   P+A A AS+ +      A   
Sbjct: 61  VEEGDT-VPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRV 113

Length = 404

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  115 bits (290), Expect = 7e-30
 Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   + E  +++WL KEGD V     L  ++TDKA M   +   G++ +I V  
Sbjct: 4   EFKVPDIG-EVVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV 62

Query: 105 NTTDVKVGTLIAVMVEEGE---DWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
             T V VG L+AV+   G         + +A + +A A+ + A+  P   A ++GG V  
Sbjct: 63  GDT-VSVGGLLAVIEAAGAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGV-- 119

Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM 205
             + +P +   +TE  +++WL K GD V     L  ++TDKA M
Sbjct: 120 VEVKVPDIG-EITEVEVIEWLVKVGDTVEEDQSLITVETDKATM 162

Length = 547

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  103 bits (258), Expect = 1e-25
 Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 18/186 (9%)

Query: 46  IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 105
           +KMP+L  ++TEGT+  WLK  GD V   + L E+ TDK      +   G+L +I  PE+
Sbjct: 5   VKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPED 64

Query: 106 TTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPS----------- 154
            T V+VG ++A++ E GE     + S  +P+A    ++  P  P PAP+           
Sbjct: 65  DT-VEVGGVLAIIGEPGE-----AGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAP 118

Query: 155 -SGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEG 213
            +GGS     + MP L  ++TEGT+  WLK  GD V   + L E+ TDK      +   G
Sbjct: 119 QAGGSGEATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAG 178

Query: 214 ILAKIL 219
            L +I 
Sbjct: 179 TLLEIR 184

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  101 bits (254), Expect = 5e-25
 Identities = 47/93 (50%), Positives = 54/93 (58%)

Query: 127 NVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEG 186
                 T      S SS+         SS    P Q I MPSLSPTMTEG I +WLKKEG
Sbjct: 78  KNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEG 137

Query: 187 DAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           D V PG+VLCE++TDKA +  E  EEG LAKI+
Sbjct: 138 DKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 170

Length = 539

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  100 bits (251), Expect = 9e-25
 Identities = 37/56 (66%), Positives = 42/56 (75%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I MP+LSPTM EGT+ KWLKKEGD V  GDV+ EI+TDKA M  E  +EG L KIL
Sbjct: 5   ILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKIL 60

Length = 464

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 98.4 bits (246), Expect = 4e-24
 Identities = 52/163 (31%), Positives = 78/163 (47%), Gaps = 14/163 (8%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           EIK+P+L  ++TE TI  W KK GDAV   +VL EI+TDK V+       G+L++IL  E
Sbjct: 4   EIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEE 63

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
             T V VG ++  + E          +A + +A A+A++A+   P  A ++  +      
Sbjct: 64  GDT-VTVGQVLGRIDEGA--------AAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDA 114

Query: 165 NMPSLSPTMTEGTI----VKWLKKEGDAVVPGDVLCEIQTDKA 203
             P+      E  +    VK   K G  V   DVL  +    A
Sbjct: 115 LSPAARKLAAENGLDASAVKGTGKGG-RVTKEDVLAALAAAAA 156

Length = 407

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 97.9 bits (244), Expect = 7e-24
 Identities = 40/57 (70%), Positives = 44/57 (77%)

Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
            I MP+LSPTMT G + KWLKKEGD V PGDV+ EI+TDKA M FE  EEG LAKIL
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKIL 57

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 89.4 bits (223), Expect = 1e-23
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             I MP L  +MTEGTIV+WL KEGD+V  GDVL E++TDKA +  E    G+LAKIL
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKIL 58

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 91.8 bits (229), Expect = 8e-22
 Identities = 26/57 (45%), Positives = 33/57 (57%)

Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
              MP L   MTEG IV+WL K GD V  G  L E++TDKA +   +   G +AK+L
Sbjct: 4   EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL 60

Length = 411

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 90.8 bits (226), Expect = 1e-21
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
             I MP    +MTEG +  WL +EGD V  GD L +++TDK     E    G L + +  
Sbjct: 3   TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ 62

Query: 104 ENTTDVKVGTLIAVMVEEG 122
           E  T + VG L+AV+ +  
Sbjct: 63  EGET-LPVGALLAVVADAE 80

Length = 371

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 89.4 bits (222), Expect = 6e-21
 Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 13/130 (10%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           EIK+P L+ ++TEGT+ +W KK GD V   + + EI+TDK V+   +  +G+L +IL  E
Sbjct: 2   EIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKE 61

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
             T V+ G ++A+ +EEG D       AT+     S       P   A ++  +      
Sbjct: 62  GDT-VESGQVLAI-LEEGND-------ATAAPPAKSGEEKEETPAASAAAAPTAAA---- 108

Query: 165 NMPSLSPTMT 174
           N PSLSP   
Sbjct: 109 NRPSLSPAAR 118

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 87.8 bits (218), Expect = 4e-20
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 17/176 (9%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
            EIK+P +     E  + + L K GD V     L  ++ DKA M   + + G++ +I V 
Sbjct: 3   IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVK 60

Query: 104 ENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQI 163
                V+ G LI +                + +A A A       P  AP++  +   + 
Sbjct: 61  VGDK-VETGALIMIFESA---------DGAADAAPAQAEEKKEAAPAAAPAAAAA---KD 107

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +++P +     E  + + L K GD V     L  ++ DKA M       G + +I 
Sbjct: 108 VHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 161

Length = 633

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 35/56 (62%), Positives = 40/56 (71%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I MP L  TMTEGTIV+WLKK GD V  GDVL E++TDKA M     + G+LAKIL
Sbjct: 5   IKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Length = 404

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 81.6 bits (202), Expect = 5e-18
 Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 19/164 (11%)

Query: 42  AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
           A +++ +P +     E  + + L K GD V     L  ++ DKA M       G + +I 
Sbjct: 104 AAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 161

Query: 102 VPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPG 161
           V      V  G+LI V    GE            +  A+ ++A    P  AP++   V  
Sbjct: 162 VNVGDK-VSTGSLIMVFEVAGE------------APAAAPAAAEAAAPAAAPAAAAGV-- 206

Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM 205
           + +N+P +     E  + + + K GD V     L  ++ DKA M
Sbjct: 207 KDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASM 248

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 70.3 bits (173), Expect = 2e-16
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           EIK P +  ++ EGT  +WL K GD V  G VLCE++  K  M       G++ +ILV E
Sbjct: 2   EIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKE 60

Query: 105 NTTDVKVGTLIAVM 118
             T V+VG  +A +
Sbjct: 61  GDT-VEVGDPLAKI 73

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 75.2 bits (186), Expect = 8e-16
 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)

Query: 42  AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
              E+K+P +   +TE  +++WL K GD V     L  ++TDKA M   +   G++ +I 
Sbjct: 118 GVVEVKVPDIG-EITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176

Query: 102 VPENTTDVKVGTLIAVM-VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
           V      V VG+L+ V+ V         + +A +P+A A+A+ A  P    AP++     
Sbjct: 177 VKVGDK-VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAA 235

Length = 547

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 22/58 (37%), Positives = 30/58 (51%)

Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             I MP    +MTEG +  WL +EGD V  GD L +++TDK     E    G L + +
Sbjct: 3   TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQV 60

Length = 371

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 66.3 bits (162), Expect = 8e-15
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
            I +P L+  + +GT+VKWLKK GD V  GDVL EI+  KA    E  + G + K+LV E
Sbjct: 1   TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60

Query: 105 NTT 107
            T 
Sbjct: 61  GTK 63

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 1/157 (0%)

Query: 4   LVRSRLTKLASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKW 63
           LV+     L S         +          H +    + + IK+P++  +++EGT+V+W
Sbjct: 5   LVKRLNKPLLSSVKGMFRRFSLRKLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEW 64

Query: 64  LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE 123
            KK GD V   +V+C I+TDK  +       G++ KI   E  T V+VG  ++ +   G 
Sbjct: 65  KKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDTGGA 123

Query: 124 DWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVP 160
                  +A +  A  +         P       S P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKP 160

Length = 418

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 66.8 bits (163), Expect = 6e-13
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 7/176 (3%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           EIK+P +     EG +++ L K GD V  G  L  +++DKA M   +   GI+ +I V  
Sbjct: 2   EIKVPDIG-DNEEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPP--PPAPSSGGSVPGQ 162
             T + VG +IA +  E          A   +A A  + A  P      AP++G S   Q
Sbjct: 61  GDT-LPVGGVIATL--EVGAGAQAQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQ 117

Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
            + +P +   + + T+++ L K GD V     L  +++DKA M       G++  +
Sbjct: 118 EVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSV 172

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 61.3 bits (149), Expect = 7e-13
 Identities = 26/57 (45%), Positives = 35/57 (61%)

Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
            I +P L+  + +GT+VKWLKK GD V  GDVL EI+  KA    E  + G + K+L
Sbjct: 1   TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVL 57

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 66.2 bits (161), Expect = 9e-13
 Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 11/119 (9%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E+KMP L  ++TEGT+  WLK  GD V   + L E+ TDK      +   G L +I  PE
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187

Query: 105 NTTDVKVGTLIAVM----------VEEGEDWQNVSVSATSPSATASASSASPPPPPPAP 153
           + T V+VGT++A++           EE     + + S  +P   A A  A+P PP PAP
Sbjct: 188 DDT-VEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAP 245

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 26/56 (46%), Positives = 36/56 (64%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I +P+L  ++TE TI  W KK GDAV   +VL EI+TDK V+       G+L++IL
Sbjct: 5   IKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 23/56 (41%), Positives = 37/56 (66%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I +P L+ ++TEGT+ +W KK GD V   + + EI+TDK V+   +  +G+L +IL
Sbjct: 3   IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEIL 58

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 41  DAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI 100
              +++ +P +     E  + + + K GD V     L  ++ DKA M       G + +I
Sbjct: 204 AGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI 261

Query: 101 LVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSS 155
            V      VK G+LI     EG      +  A +P+   +A+ A       AP++
Sbjct: 262 KVNVGDK-VKTGSLIMRFEVEG------AAPAAAPAKQEAAAPAPAAAKAEAPAA 309

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I  P +  ++ EGT  +WL K GD V  G VLCE++  K  M       G++ +IL
Sbjct: 3   IKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEIL 57

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +I +P++  +++EGT+V+W KK GD V   +V+C I+TDK  +       G++ KI 
Sbjct: 46  VIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIF 102

Length = 418

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 52.4 bits (125), Expect = 4e-08
 Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 6/106 (5%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E  +P +  ++T+GT+  +LKK G+ V   + + +I+TDK  +   +   G++ + LV E
Sbjct: 93  EAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKE 152

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPP 150
             T V+ GT +A+ + + ED    + S  +PS     ++   P PP
Sbjct: 153 GDT-VEPGTKVAI-ISKSED----AASQVTPSQKIPETTDPKPSPP 192

Length = 463

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 47.8 bits (115), Expect = 6e-08
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           GT+VK L KEGD V  G  L  ++  K          G++ +ILV E    V+ G L+ V
Sbjct: 8   GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVV 66

Query: 118 M 118
           +
Sbjct: 67  I 67

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 12/111 (10%)

Query: 60  IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL-VPENTTDVKVG-TLIAV 117
           +++W  KEGD V     LCE+Q+DKA +   +  +G +A+I   P +   VKVG TL+ +
Sbjct: 15  LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI--VKVGETLLKI 72

Query: 118 MVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPS 168
           MVE+ +     S S   P+ +++  S +           GS    +++ P+
Sbjct: 73  MVEDSQH--LRSDSLLLPTDSSNIVSLA------ESDERGSNLSGVLSTPA 115

Length = 416

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
           QE+ +P +   + + T+++ L K GD V+    L  +++DKA M       G++  + V 
Sbjct: 117 QEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV- 174

Query: 104 ENTTD-VKVGTLIAVM-VEEGEDWQNVSVSATSPSATASASSASPPPPPPAPS 154
               D V  G LI  + V         + ++  P+A + A++   P   PA +
Sbjct: 175 -KVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAA 226

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 126 QNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKE 185
               + A+SPSA A+  +AS P P PA ++GG            SP +  GT+ K   + 
Sbjct: 39  APAPIEASSPSAAAAQPAASAPAPAPAAAAGG--------TQVTSPMV--GTVYKPFVEV 88

Query: 186 GDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           GD V  G  L  I+  K     E   +G++ +IL
Sbjct: 89  GDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL 122

Length = 140

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           GT+ K   + GD V  G  L  I+  K     E   +G++ +ILV +N   V+ G  +AV
Sbjct: 79  GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILV-KNGDPVEYGDPLAV 137

Query: 118 M 118
           +
Sbjct: 138 I 138

Length = 140

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           GT+VK L KEGD V  G  L  ++  K          G++ +IL
Sbjct: 8   GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEIL 51

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 22/103 (21%)

Query: 109 VKV-GTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMP 167
           V+V G    V V EG D     +S  +P+A A+A +A+    P A +      G+ +  P
Sbjct: 482 VEVEGKAYVVKVSEGGD-----ISQITPAAPAAAPAAAAAAAPAAAA------GEPVTAP 530

Query: 168 SLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETE 210
            L+     G I K +  EG  V  GDVL  ++     M  ETE
Sbjct: 531 -LA-----GNIFKVIVTEGQTVAEGDVLLILEA----MKMETE 563

Length = 593

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 178 IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +++W  KEGD V     LCE+Q+DKA +   +  +G +A+I 
Sbjct: 15  LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQIN 56

Length = 416

>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 58   GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFET----EEEGILAKILVPENTTDVKVGT 113
            G++V  L KEGD V  GD L  I+     M  ET      +G + ++LV      V+ G 
Sbjct: 1085 GSVVTVLVKEGDEVKAGDPLAVIE----AMKMETTITAPVDGTVKRVLVKAGDQ-VEAGD 1139

Query: 114  LIAVMVE 120
            L+  +  
Sbjct: 1140 LLVELEP 1146

Length = 1146

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.97
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.96
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.96
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.95
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.95
KOG0557|consensus	470		99.9
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.87
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.83
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.8
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.8
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.77
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.75
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.75
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.72
KOG0559|consensus	457		99.71
PRK06748	83	hypothetical protein; Validated	99.71
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.7
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.68
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.66
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.63
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.63
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	99.62
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.61
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.59
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.58
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	99.57
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.55
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.5
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.48
KOG0558|consensus	474		99.48
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.47
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.43
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.43
PRK07051	80	hypothetical protein; Validated	99.42
KOG0557|consensus	470		99.39
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.38
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.34
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.34
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.33
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.32
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.31
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.3
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.29
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.29
PRK06748	83	hypothetical protein; Validated	99.28
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.25
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.21
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.21
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.14
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.14
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.14
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.13
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.12
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.12
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.11
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.11
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.1
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.07
PRK09282	592	pyruvate carboxylase subunit B; Validated	99.02
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.96
KOG0559|consensus	457		98.94
PRK12999	1146	pyruvate carboxylase; Reviewed	98.93
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	98.88
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.88
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	98.85
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.82
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.77
KOG0558|consensus	474		98.75
PRK07051	80	hypothetical protein; Validated	98.68
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.67
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.61
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.6
KOG0369|consensus	1176		98.52
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.47
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.44
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.43
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.4
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.34
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.27
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.27
KOG0238|consensus	670		98.26
PRK10476	346	multidrug resistance protein MdtN; Provisional	98.25
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.25
PRK09783	409	copper/silver efflux system membrane fusion protei	98.24
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.21
PRK12999	1146	pyruvate carboxylase; Reviewed	98.2
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.19
PRK00624	114	glycine cleavage system protein H; Provisional	98.18
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.15
PRK00624	114	glycine cleavage system protein H; Provisional	98.14
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	98.13
PRK13380	144	glycine cleavage system protein H; Provisional	98.13
PRK13380	144	glycine cleavage system protein H; Provisional	98.1
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	98.06
KOG0368|consensus	2196		98.0
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.96
PRK01202	127	glycine cleavage system protein H; Provisional	97.92
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	97.91
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.9
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.9
PRK01202	127	glycine cleavage system protein H; Provisional	97.89
PRK09859	385	multidrug efflux system protein MdtE; Provisional	97.82
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.8
KOG0369|consensus	1176		97.74
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.74
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.73
PRK12784	84	hypothetical protein; Provisional	97.67
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	97.66
PRK11578	370	macrolide transporter subunit MacA; Provisional	97.64
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.6
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.54
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	97.47
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	97.44
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.37
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	97.34
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	97.27
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	97.22
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	97.09
KOG0238|consensus	670		97.08
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	97.07
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.95
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	96.94
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	96.88
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	96.82
PRK12784	84	hypothetical protein; Provisional	96.69
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	96.54
COG3608	331	Predicted deacylase [General function prediction o	96.39
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	96.25
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	96.23
PRK09783	409	copper/silver efflux system membrane fusion protei	96.21
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	96.14
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	96.1
KOG0368|consensus	2196		96.07
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	95.88
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	95.82
PF13437	105	HlyD_3: HlyD family secretion protein	95.6
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	95.55
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	95.43
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.97
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	94.79
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	94.76
PF00529	305	HlyD: HlyD family secretion protein the correspond	94.75
PF00529	305	HlyD: HlyD family secretion protein the correspond	94.68
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	94.54
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	94.43
PRK10476	346	multidrug resistance protein MdtN; Provisional	94.21
KOG3373|consensus	172		94.2
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	94.19
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	94.16
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	94.1
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	93.91
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	93.69
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	93.63
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	93.37
COG3608	331	Predicted deacylase [General function prediction o	93.36
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	93.31
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	93.12
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	93.12
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	93.12
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	92.98
KOG3373|consensus	172		92.92
PRK09859	385	multidrug efflux system protein MdtE; Provisional	92.83
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.82
PRK05035	695	electron transport complex protein RnfC; Provision	92.8
PRK11578	370	macrolide transporter subunit MacA; Provisional	92.74
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	92.7
PRK09439	169	PTS system glucose-specific transporter subunit; P	92.7
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	92.67
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	92.65
PRK03598	331	putative efflux pump membrane fusion protein; Prov	92.63
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	92.58
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	92.56
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	92.52
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	92.51
PRK15136	390	multidrug efflux system protein EmrA; Provisional	92.45
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.3
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	92.19
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	92.15
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	92.15
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	92.02
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	91.96
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	91.87
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.83
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	91.38
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	90.97
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	90.8
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	90.73
COG4072	161	Uncharacterized protein conserved in archaea [Func	90.66
PRK05035	695	electron transport complex protein RnfC; Provision	90.27
PF13437	105	HlyD_3: HlyD family secretion protein	89.93
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	89.72
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	89.68
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	89.5
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	89.07
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	88.16
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	88.05
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	87.89
COG2190	156	NagE Phosphotransferase system IIA components [Car	87.65
PRK05305	206	phosphatidylserine decarboxylase; Provisional	87.51
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	87.39
COG4072	161	Uncharacterized protein conserved in archaea [Func	87.13
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	87.09
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	86.66
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	86.58
PF06898	385	YqfD: Putative stage IV sporulation protein YqfD;	86.57
PRK10255	648	PTS system N-acetyl glucosamine specific transport	86.54
PRK05305	206	phosphatidylserine decarboxylase; Provisional	86.31
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	85.79
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	84.09
PRK09439	169	PTS system glucose-specific transporter subunit; P	83.14
PF02666	202	PS_Dcarbxylase: Phosphatidylserine decarboxylase;	82.75
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	82.31
PRK14844	2836	bifunctional DNA-directed RNA polymerase subunit b	82.3
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	81.96
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	81.14
PRK09824	627	PTS system beta-glucoside-specific transporter sub	80.34

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.97  E-value=6.4e-30  Score=240.75  Aligned_cols=177  Identities=32%  Similarity=0.518  Sum_probs=136.3

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.+.|+||++|.+|.+|+|.+|+|++||.|+.||.||++|+||+.+++.|+.+|+|.++++++|+. |.+|+.|+.+...
T Consensus         1 M~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~-v~vG~~ia~i~~~   79 (590)
T TIGR02927         1 MAFSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDT-VDIGGEIAIIGEA   79 (590)
T ss_pred             CCeeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCE-EeeeeeEEEEeec
Confidence            456899999999999999999999999999999999999999999999999999999999999999 9999999998754


Q ss_pred             Ccccccccc--ccCCC-CccccC-----CCCCCCCC----CCCC---CCCCC-CCceeeccCCCCCCcccceeeeEeecC
Q psy10439        122 GEDWQNVSV--SATSP-SATASA-----SSASPPPP----PPAP---SSGGS-VPGQIINMPSLSPTMTEGTIVKWLKKE  185 (219)
Q Consensus       122 ~~~~~~~~~--~~~~~-a~~a~a-----~a~a~~~a----~~~a---a~~~~-~~~~~i~~P~lg~~~~~~~i~~~~v~~  185 (219)
                      ++.......  ..+.. +..++.     ......+.    ..+.   ++... .....+.||++|.++.+|+|.+|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~v~~  159 (590)
T TIGR02927        80 GEASAEAGAEDSAAAAEPEEAPAEEAPKEEPKAAPAESVEQAPAESSAPSQGGGAATDIEMPELGESVTEGTITQWLKAV  159 (590)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEcCCCCCCcceEEEEEEEeCC
Confidence            332110100  00000 000000     00000000    0000   01101 223689999999999999999999999


Q ss_pred             CCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        186 GDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       186 Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ||.|++||.||+||+||+++||+||++|+|.+|+
T Consensus       160 Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~  193 (590)
T TIGR02927       160 GDKIEVDEPILEVSTDKVDTEIPSPVAGTILEIL  193 (590)
T ss_pred             CCEecCCCEeEEEEecceeeEEcCCCCeEEEEEe
Confidence            9999999999999999999999999999999974

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.96  E-value=1.8e-28  Score=229.63  Aligned_cols=175  Identities=30%  Similarity=0.503  Sum_probs=134.7

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++|+||++|+ +.+|+|.+|+|++||.|++||.|++||+||+.++|+|+.+|+|.++++++|+. |..|++|+.+.+.
T Consensus         1 M~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~~G~~L~~i~~~   78 (547)
T PRK11855          1 MAIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLLAVIEAA   78 (547)
T ss_pred             CCceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ecCCceeeEeccc
Confidence            557899999999 99999999999999999999999999999999999999999999999999999 9999999999754


Q ss_pred             CccccccccccCCCCccccCCCCCCC-CCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439        122 GEDWQNVSVSATSPSATASASSASPP-PPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT  200 (219)
Q Consensus       122 ~~~~~~~~~~~~~~a~~a~a~a~a~~-~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~  200 (219)
                      ..................+..++... +.+....+........+.+|++|. +.+|+|.+|++++||.|++||.|+++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vet  157 (547)
T PRK11855         79 GAAAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVET  157 (547)
T ss_pred             ccccccccccccccccccccccccccccccccccCcccCCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEe
Confidence            43111110000000000000000000 000000011111246899999999 9999999999999999999999999999


Q ss_pred             cceeeeeeCCCCeEEEEcC
Q psy10439        201 DKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       201 ~K~~~~i~a~~~G~v~~i~  219 (219)
                      ||+.++|.||++|+|.+|+
T Consensus       158 dK~~~ev~Ap~~G~v~~i~  176 (547)
T PRK11855        158 DKATMEIPSPVAGVVKEIK  176 (547)
T ss_pred             cceeEEecCCCCeEEEEEe
Confidence            9999999999999999874

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.96  E-value=9.8e-28  Score=224.28  Aligned_cols=171  Identities=25%  Similarity=0.418  Sum_probs=131.4

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      ++|+||+||.. .+|+|++|+|++||.|++||.|++||+||+.++|.|+.+|+|.+++++.|+. |..|++|+.|...+.
T Consensus         1 ~~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~-V~~G~~La~i~~~~~   78 (546)
T TIGR01348         1 TEIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAG   78 (546)
T ss_pred             CceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCE-EeccceEEEEecccc
Confidence            36899999987 8999999999999999999999999999999999999999999999999999 999999999964332


Q ss_pred             cccccccccCCCCccccCCCCCCCCCCCCCCCCC--CCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        124 DWQNVSVSATSPSATASASSASPPPPPPAPSSGG--SVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       124 ~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~--~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      ..... ......++...+....+. ......+..  ......+.||++|. +++|+|.+|+|++||.|++||.||++|+|
T Consensus        79 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetd  155 (546)
T TIGR01348        79 AQAQA-EAKKEAAPAPTAGAPAPA-AQAQAAPAAGQSSGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESD  155 (546)
T ss_pred             ccccc-cccccccccccccccccc-ccccccccccccCCceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEec
Confidence            11100 000000000000000000 000000111  11236899999999 99999999999999999999999999999


Q ss_pred             ceeeeeeCCCCeEEEEcC
Q psy10439        202 KAVMSFETEEEGILAKIL  219 (219)
Q Consensus       202 K~~~~i~a~~~G~v~~i~  219 (219)
                      |+.++|+||++|+|.+|+
T Consensus       156 K~~~ei~a~~~G~v~~i~  173 (546)
T TIGR01348       156 KASMEVPAPASGVVKSVK  173 (546)
T ss_pred             ceeeEecCCCCcEEEEEe
Confidence            999999999999999874

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.95  E-value=1.5e-26  Score=219.84  Aligned_cols=161  Identities=24%  Similarity=0.368  Sum_probs=129.9

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |..+|+||+||  +++|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|+..
T Consensus         1 m~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~-V~~G~~l~~i~~~   77 (633)
T PRK11854          1 MAIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMIFESA   77 (633)
T ss_pred             CCceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCE-EeCCCEEEEEecc
Confidence            45689999999  99999999999999999999999999999999999999999999999999999 9999999999654


Q ss_pred             CccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        122 GEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       122 ~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      +.. .    .  ..+  +..........   ++.........+.+|.+|  +.+|++.+|++++||.|++||.|+.+|+|
T Consensus        78 ~~~-~----~--~~~--~~~~~~~~~~~---~~~~~~~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~  143 (633)
T PRK11854         78 DGA-A----D--AAP--AQAEEKKEAAP---AAAPAAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGD  143 (633)
T ss_pred             ccc-c----c--ccc--ccccccccccc---ccccccCCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehh
Confidence            211 0    0  000  00000000000   001111223579999999  88999999999999999999999999999


Q ss_pred             ceeeeeeCCCCeEEEEcC
Q psy10439        202 KAVMSFETEEEGILAKIL  219 (219)
Q Consensus       202 K~~~~i~a~~~G~v~~i~  219 (219)
                      |+.++|.||++|+|.+++
T Consensus       144 K~~~~I~Ap~~G~V~~i~  161 (633)
T PRK11854        144 KASMEVPAPFAGTVKEIK  161 (633)
T ss_pred             hceeEEeCCCCEEEEEEE
Confidence            999999999999998863

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.95  E-value=1.7e-26  Score=219.50  Aligned_cols=160  Identities=26%  Similarity=0.357  Sum_probs=132.3

Q ss_pred             cceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         41 DAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        41 ~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .+.+.++||++|  +.+|+|.+|+|++||.|++||.|+.+|+||+..+|.||++|+|.++++++|+. |..|++|+.+..
T Consensus       103 ~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~  179 (633)
T PRK11854        103 AAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEV  179 (633)
T ss_pred             CCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEec
Confidence            456789999999  89999999999999999999999999999999999999999999999999999 999999999975


Q ss_pred             cCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439        121 EGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT  200 (219)
Q Consensus       121 ~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~  200 (219)
                      .+....    ..+ +.    +....+..     .+........+.||++|  +++|+|.+|++++||.|++||+||++|+
T Consensus       180 ~~~~~~----~~~-~~----~~~~~~~~-----~~~~a~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vet  243 (633)
T PRK11854        180 AGEAPA----AAP-AA----AEAAAPAA-----APAAAAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEG  243 (633)
T ss_pred             cccccc----ccc-cc----cccccccc-----cccccCCceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEe
Confidence            432211    000 00    00000000     01111234689999999  8999999999999999999999999999


Q ss_pred             cceeeeeeCCCCeEEEEcC
Q psy10439        201 DKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       201 ~K~~~~i~a~~~G~v~~i~  219 (219)
                      ||+.++|+||++|+|.+|+
T Consensus       244 dK~~~~i~ap~~G~l~~i~  262 (633)
T PRK11854        244 DKASMEVPAPFAGTVKEIK  262 (633)
T ss_pred             cceeeEeeCCCCeEEEEEe
Confidence            9999999999999999874

>KOG0557|consensus

Probab=99.90  E-value=8.9e-24  Score=188.79  Aligned_cols=102  Identities=47%  Similarity=0.785  Sum_probs=92.9

Q ss_pred             eeeeeccC-CcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeee
Q psy10439         32 ICLHTTNI-LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVK  110 (219)
Q Consensus        32 ~~~~~~~~-~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~  110 (219)
                      +|+|.+.. ++.++.|.||.|+++|++|.|++|++++||++++||+||+|||||++++++++.+|+|++|++++|..+|.
T Consensus        26 ~~~~~~a~~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvp  105 (470)
T KOG0557|consen   26 KCAHHSASKLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVP  105 (470)
T ss_pred             hhhccccccCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCccccc
Confidence            34443333 89999999999999999999999999999999999999999999999999999999999999999977799


Q ss_pred             cCcEEEEEeecCccccccccccC
Q psy10439        111 VGTLIAVMVEEGEDWQNVSVSAT  133 (219)
Q Consensus       111 ~G~~l~~i~~~~~~~~~~~~~~~  133 (219)
                      +|.+|+.|.+.+++++++..+.+
T Consensus       106 VGk~Iaiive~e~di~~~k~~k~  128 (470)
T KOG0557|consen  106 VGKPIAIIVEDEDDIAAFKLPKD  128 (470)
T ss_pred             CCCceEEEecccccHHHhhcccc
Confidence            99999999999999887776655

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.87  E-value=6.9e-22  Score=178.86  Aligned_cols=82  Identities=60%  Similarity=0.866  Sum_probs=78.7

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++|+||+||++|+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+. |.+|++|++|...
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~   79 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEE   79 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecC
Confidence            568999999999999999999999999999999999999999999999999999999999999999 9999999999877


Q ss_pred             Ccc
Q psy10439        122 GED  124 (219)
Q Consensus       122 ~~~  124 (219)
                      +++
T Consensus        80 ~~~   82 (404)
T COG0508          80 GAD   82 (404)
T ss_pred             CCc
Confidence            654

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.83  E-value=3.3e-20  Score=167.79  Aligned_cols=109  Identities=28%  Similarity=0.420  Sum_probs=93.2

Q ss_pred             ccccccccccccccccccceeeeeeccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEec
Q psy10439         12 LASKFINPTYNNAFLNKSKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFET   91 (219)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~a   91 (219)
                      +|+---++|.++.+ -+.+.-..|.+.+....++|+||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+|
T Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~A   92 (418)
T PTZ00144         14 LSSVKGMFRRFSLR-KLQPACSAHFSKSYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRA   92 (418)
T ss_pred             cccchhHHHHHhhh-ccchhhhhhcccccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEec
Confidence            33333444444444 33444446888888889999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         92 EEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        92 p~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      |.+|+|.++++++|+. |.+|++|+.|+..+
T Consensus        93 p~~G~v~~i~v~~G~~-V~~G~~L~~I~~~~  122 (418)
T PTZ00144         93 PASGVITKIFAEEGDT-VEVGAPLSEIDTGG  122 (418)
T ss_pred             CCCeEEEEEEeCCCCE-ecCCCEEEEEcCCC
Confidence            9999999999999999 99999999997544

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.80  E-value=3.3e-19  Score=162.65  Aligned_cols=80  Identities=30%  Similarity=0.574  Sum_probs=76.2

Q ss_pred             CcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        40 ~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..| ++|+||++|++|++|+|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++||. |.+|++|+.|+
T Consensus        89 ~~m-~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~  166 (463)
T PLN02226         89 GDT-VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIIS  166 (463)
T ss_pred             CCc-eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEec
Confidence            345 6999999999999999999999999999999999999999999999999999999999999999 99999999996


Q ss_pred             ec
Q psy10439        120 EE  121 (219)
Q Consensus       120 ~~  121 (219)
                      +.
T Consensus       167 ~~  168 (463)
T PLN02226        167 KS  168 (463)
T ss_pred             cC
Confidence            54

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.80  E-value=1.7e-19  Score=126.33  Aligned_cols=74  Identities=50%  Similarity=0.755  Sum_probs=71.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ++|++|.+|..+.+++|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4799999999999999999999999999999999999999999999999999999999999999 9999999876

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.77  E-value=3.7e-18  Score=158.56  Aligned_cols=93  Identities=54%  Similarity=0.847  Sum_probs=88.0

Q ss_pred             cceeeeeeccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-e
Q psy10439         29 SKIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-T  107 (219)
Q Consensus        29 ~~~~~~~~~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~  107 (219)
                      .+.|+|+.....+.+++|+||++|++|++|+|.+|+|++||.|++||.||+|||||++++++|+.+|+|.++++++|+ .
T Consensus        98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~  177 (539)
T PLN02744         98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE  177 (539)
T ss_pred             cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence            668999999889999999999999999999999999999999999999999999999999999999999999999996 7


Q ss_pred             eeecCcEEEEEeecC
Q psy10439        108 DVKVGTLIAVMVEEG  122 (219)
Q Consensus       108 ~V~~G~~l~~i~~~~  122 (219)
                       |++|++|+++.+.+
T Consensus       178 -v~vG~~ia~i~~~~  191 (539)
T PLN02744        178 -IKVGEVIAITVEEE  191 (539)
T ss_pred             -cCCCCEEEEEccCc
Confidence             99999999885443

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.75  E-value=6.2e-18  Score=149.56  Aligned_cols=80  Identities=36%  Similarity=0.608  Sum_probs=76.3

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++++||++|++|++|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|+.|+.+.+.
T Consensus         1 ~~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~   79 (371)
T PRK14875          1 SITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADA   79 (371)
T ss_pred             CceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            357999999999999999999999999999999999999999999999999999999999999999 9999999999754


Q ss_pred             C
Q psy10439        122 G  122 (219)
Q Consensus       122 ~  122 (219)
                      .
T Consensus        80 ~   80 (371)
T PRK14875         80 E   80 (371)
T ss_pred             C
Confidence            3

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.75  E-value=1.3e-17  Score=151.12  Aligned_cols=81  Identities=42%  Similarity=0.652  Sum_probs=77.1

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++|+||++|++|++|+|.+|+|++||.|++||.||+||+||+.++|+||.+|+|.++++++|+. |.+|++|+.+++.
T Consensus         1 m~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~   79 (407)
T PRK05704          1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEG   79 (407)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence            457999999999999999999999999999999999999999999999999999999999999999 9999999999765


Q ss_pred             Cc
Q psy10439        122 GE  123 (219)
Q Consensus       122 ~~  123 (219)
                      ++
T Consensus        80 ~~   81 (407)
T PRK05704         80 AA   81 (407)
T ss_pred             Cc
Confidence            43

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.72  E-value=5.4e-17  Score=146.95  Aligned_cols=78  Identities=40%  Similarity=0.698  Sum_probs=74.8

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ++|+||++|++|++|+|++|+|++||.|++||.|+++|+||+.++++|+.+|+|.++++++|+. |.+|++|++|++.+
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~   78 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGN   78 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence            4789999999999999999999999999999999999999999999999999999999999999 99999999997543

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>KOG0559|consensus

Probab=99.71  E-value=2.3e-17  Score=143.55  Aligned_cols=78  Identities=29%  Similarity=0.590  Sum_probs=75.6

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ..++..|.++++++||.|.+|++++||.|++++.+|+|||||.+++|.||.+|+|.++++++||. |..|+.|+.|...
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~g  149 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISPG  149 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999 9999999999764

>PRK06748 hypothetical protein; Validated

Probab=99.71  E-value=9.8e-17  Score=114.16  Aligned_cols=63  Identities=21%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec-cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT-DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet-~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .|+|.+|+|++||.|++||+|++||| ||+..+|+||.+|+|.++++++||. |.+|++|+.|.+
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence            39999999999999999999999999 9999999999999999999999999 999999999953

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.70  E-value=1.6e-16  Score=150.08  Aligned_cols=82  Identities=37%  Similarity=0.598  Sum_probs=77.5

Q ss_pred             cceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         41 DAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        41 ~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .+.++|+||+||++|++|+|.+|+|++||.|++||.||+|||||++++|+||.+|+|.++++++|+. |.+|++|+.|+.
T Consensus       133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~  211 (590)
T TIGR02927       133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGD  211 (590)
T ss_pred             CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEec
Confidence            4458999999999999999999999999999999999999999999999999999999999999999 999999999975


Q ss_pred             cCc
Q psy10439        121 EGE  123 (219)
Q Consensus       121 ~~~  123 (219)
                      .++
T Consensus       212 ~~~  214 (590)
T TIGR02927       212 AGA  214 (590)
T ss_pred             CCC
Confidence            443

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.68  E-value=5.3e-16  Score=142.62  Aligned_cols=84  Identities=63%  Similarity=0.906  Sum_probs=77.6

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-eeeecCcEEEEEee
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TDVKVGTLIAVMVE  120 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~V~~G~~l~~i~~  120 (219)
                      |.++|+||++|+++++|+|.+|+|++||.|++||.|++|||||+++++.||.+|+|.++++++|+ . |++|++|+.|++
T Consensus         1 M~~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~-V~vG~~i~~i~~   79 (464)
T PRK11892          1 MAIEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEG-VKVNTPIAVLLE   79 (464)
T ss_pred             CCcceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcE-eCCCCEEEEEcc
Confidence            45689999999999999999999999999999999999999999999999999999999999996 6 999999999976


Q ss_pred             cCcccc
Q psy10439        121 EGEDWQ  126 (219)
Q Consensus       121 ~~~~~~  126 (219)
                      ++++..
T Consensus        80 ~~~~~~   85 (464)
T PRK11892         80 EGESAS   85 (464)
T ss_pred             CCCccc
Confidence            554433

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.66  E-value=7.4e-16  Score=144.53  Aligned_cols=78  Identities=27%  Similarity=0.464  Sum_probs=74.9

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      .+.|+||++|+ |++|+|++|+|++||.|++||.|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|...+
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~  193 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAG  193 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCC
Confidence            37999999999 99999999999999999999999999999999999999999999999999999 99999999997544

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.63  E-value=4.1e-15  Score=135.35  Aligned_cols=81  Identities=49%  Similarity=0.742  Sum_probs=76.8

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.+.++||++|+++++|+|.+|+|++||.|++||.|++||+||+.++++||.+|+|.++++++|+. |.+|++|+.+.+.
T Consensus         1 M~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~   79 (411)
T PRK11856          1 MMFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEE   79 (411)
T ss_pred             CCeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecC
Confidence            456899999999999999999999999999999999999999999999999999999999999999 9999999999765


Q ss_pred             Cc
Q psy10439        122 GE  123 (219)
Q Consensus       122 ~~  123 (219)
                      ++
T Consensus        80 ~~   81 (411)
T PRK11856         80 GE   81 (411)
T ss_pred             CC
Confidence            44

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.63  E-value=2.3e-15  Score=104.53  Aligned_cols=61  Identities=26%  Similarity=0.459  Sum_probs=59.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      .|+|.+|+|++||.|++||.|+.+|+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i   70 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVI   70 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEE
Confidence            499999999999999999999999999999999999999999999999999 9999999987

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=99.62  E-value=4.9e-15  Score=134.85  Aligned_cols=76  Identities=29%  Similarity=0.514  Sum_probs=72.8

Q ss_pred             EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      |+||+||++|++|+|++|+|++||.|++||.|+++|+||+.++++|+.+|+|.++++++|+. |.+|++|+.|+..+
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~   76 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVED   76 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccC
Confidence            57999999999999999999999999999999999999999999999999999999999999 99999999996544

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.61  E-value=4.9e-15  Score=139.25  Aligned_cols=79  Identities=32%  Similarity=0.548  Sum_probs=75.4

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      +.++|+||+||+ |++|+|++|+|++||.|++||.|++||+||+.++|+||++|+|.++++++|+. |.+|++|+.+.+.
T Consensus       118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~  195 (547)
T PRK11855        118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVA  195 (547)
T ss_pred             CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecC
Confidence            347999999999 99999999999999999999999999999999999999999999999999999 9999999999765


Q ss_pred             C
Q psy10439        122 G  122 (219)
Q Consensus       122 ~  122 (219)
                      +
T Consensus       196 ~  196 (547)
T PRK11855        196 A  196 (547)
T ss_pred             C
Confidence            3

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.59  E-value=1.3e-14  Score=100.83  Aligned_cols=72  Identities=43%  Similarity=0.670  Sum_probs=69.0

Q ss_pred             EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      |.+|+++..+.+|++.+|++++||.|++||.|+.+|++|+..+++||.+|+|.+++++.|+. +..|+.|+.+
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence            67899999999999999999999999999999999999999999999999999999999999 9999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.58  E-value=5.9e-15  Score=115.56  Aligned_cols=62  Identities=31%  Similarity=0.444  Sum_probs=60.3

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      -|++.+.+|++||+|++||.||+||+||+.++|.||.+|+|.+|++++|+. |..|++|+.|.
T Consensus        78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~  139 (140)
T COG0511          78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE  139 (140)
T ss_pred             ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence            499999999999999999999999999999999999999999999999999 99999999885

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.57  E-value=3.2e-14  Score=130.24  Aligned_cols=77  Identities=69%  Similarity=1.023  Sum_probs=73.4

Q ss_pred             EecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         46 IKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        46 i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      |+||++|+++++|+|.+|+|++||.|++||.||+||+||+.+++.||.+|++.++++++|+..|.+|++|++|++.+
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~   78 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK   78 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence            78999999999999999999999999999999999999999999999999999999999986699999999996543

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.55  E-value=3.4e-14  Score=98.21  Aligned_cols=62  Identities=27%  Similarity=0.377  Sum_probs=60.0

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .|+|.+|++++||+|++||+|+.+|+||+.+++.++.+|+|.+++++.|+. |..|++|+.|+
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence            399999999999999999999999999999999999999999999999999 99999999874

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.50  E-value=3.4e-14  Score=99.43  Aligned_cols=57  Identities=49%  Similarity=0.708  Sum_probs=54.7

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.+|..++++.+.+|++++||.|++||+||++|+||+.++|.||.+|+|++++
T Consensus         2 ~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~   58 (74)
T PF00364_consen    2 EIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEIL   58 (74)
T ss_dssp             EEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEES
T ss_pred             EEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEE
Confidence            578999999999999999999999999999999999999999999999999999874

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.48  E-value=4.8e-14  Score=127.90  Aligned_cols=58  Identities=60%  Similarity=0.896  Sum_probs=56.2

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.||++|+++++|+|.+|++++||+|++||+|++|||||+++||+||.+|+|.+|+
T Consensus         3 ~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~   60 (404)
T COG0508           3 IEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL   60 (404)
T ss_pred             ceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEe
Confidence            4689999999999999999999999999999999999999999999999999999985

>KOG0558|consensus

Probab=99.48  E-value=4.3e-14  Score=122.82  Aligned_cols=85  Identities=29%  Similarity=0.470  Sum_probs=78.6

Q ss_pred             ccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439         37 TNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA  116 (219)
Q Consensus        37 ~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~  116 (219)
                      +.+......|++-|+|+++.|.++.+|+|++||+|++-|.||++++||+++.|.+.++|+|++++...+|. ..+|++|.
T Consensus        58 t~s~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lv  136 (474)
T KOG0558|consen   58 TDSNSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLV  136 (474)
T ss_pred             cccccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCccee
Confidence            34444578999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             EEeecC
Q psy10439        117 VMVEEG  122 (219)
Q Consensus       117 ~i~~~~  122 (219)
                      .++..+
T Consensus       137 d~eve~  142 (474)
T KOG0558|consen  137 DLEVED  142 (474)
T ss_pred             eeeecc
Confidence            886443

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.47  E-value=3.2e-13  Score=104.11  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=59.9

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.+++++.||. |..|+.|+.|
T Consensus        68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  129 (130)
T PRK06549         68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI  129 (130)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence            3499999999999999999999999999999999999999999999999999 9999999986

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.43  E-value=6.8e-13  Score=103.90  Aligned_cols=54  Identities=26%  Similarity=0.411  Sum_probs=48.3

Q ss_pred             CceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       160 ~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ....+..|+.|+      +.+.+|++||+|++||+||+||+||++|+|.||.+|+|.+|+
T Consensus        69 ~~~~V~SPm~Gt------v~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il  122 (140)
T COG0511          69 GGTQVTSPMVGT------VYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL  122 (140)
T ss_pred             cCceEecCcceE------EEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE
Confidence            356788887765      556999999999999999999999999999999999999985

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.43  E-value=7.4e-13  Score=104.95  Aligned_cols=62  Identities=29%  Similarity=0.438  Sum_probs=59.9

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|+|++||.|++||.|+++|+||+..+|.||.+|+|.+++++.|+. |..|+.|+.|
T Consensus        91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I  152 (153)
T PRK05641         91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL  152 (153)
T ss_pred             CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence            3499999999999999999999999999999999999999999999999999 9999999986

>PRK07051 hypothetical protein; Validated

Probab=99.42  E-value=1.8e-12  Score=92.03  Aligned_cols=70  Identities=34%  Similarity=0.458  Sum_probs=64.1

Q ss_pred             eeEEecCCCCCCCceEEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439         43 QQEIKMPSLSPTMTEGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLI  115 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l  115 (219)
                      ...|..|..      |++.+       |++++||.|++||.++.+|+||+.++|+||.+|+|.++++++|+. |..|++|
T Consensus         3 ~~~~~ap~~------g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l   75 (80)
T PRK07051          3 QHEIVSPLP------GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVL   75 (80)
T ss_pred             ccEEeCCCc------eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEE
Confidence            345666754      78888       999999999999999999999999999999999999999999999 9999999


Q ss_pred             EEEe
Q psy10439        116 AVMV  119 (219)
Q Consensus       116 ~~i~  119 (219)
                      +.++
T Consensus        76 ~~i~   79 (80)
T PRK07051         76 ARIE   79 (80)
T ss_pred             EEEe
Confidence            9984

>KOG0557|consensus

Probab=99.39  E-value=4.4e-13  Score=120.58  Aligned_cols=61  Identities=56%  Similarity=0.895  Sum_probs=58.9

Q ss_pred             CCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       159 ~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      +.+..+.||.|+++|++|.|+.|.+++||++.+||+||+|||||+++++++..+|++.+|+
T Consensus        36 p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKIL   96 (470)
T KOG0557|consen   36 PAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKIL   96 (470)
T ss_pred             CcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeee
Confidence            4578999999999999999999999999999999999999999999999999999999985

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.38  E-value=4e-12  Score=86.00  Aligned_cols=62  Identities=35%  Similarity=0.523  Sum_probs=59.2

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|++.+|++++||.|++||.|+.++++|...+|+||.+|+|.+++++.|+. |..|++|+.|
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4599999999999999999999999999999999999999999999999999 9999999864

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.34  E-value=3.7e-12  Score=101.44  Aligned_cols=60  Identities=28%  Similarity=0.486  Sum_probs=58.1

Q ss_pred             EEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         58 GTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        58 g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      |++.+       |+|++||.|++||.||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus        89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i  155 (156)
T TIGR00531        89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI  155 (156)
T ss_pred             EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence            88876       999999999999999999999999999999999999999999999 9999999987

The gene name is accB or fabE.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.34  E-value=4e-12  Score=107.61  Aligned_cols=62  Identities=31%  Similarity=0.489  Sum_probs=58.8

Q ss_pred             eEEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .|++.+       |+|++||.|++||.|++||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence            377777       999999999999999999999999999999999999999999999 99999999884

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.33  E-value=2e-11  Score=94.17  Aligned_cols=54  Identities=24%  Similarity=0.282  Sum_probs=47.4

Q ss_pred             CceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       160 ~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ....+..|      -.|.|.+|++++||.|++||+|+.+|+||+.++|.||.+|+|.+|+
T Consensus        60 ~~~~v~Ap------~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~  113 (130)
T PRK06549         60 GADAMPSP------MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIH  113 (130)
T ss_pred             CCcEEECC------CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEE
Confidence            34456666      3478999999999999999999999999999999999999999873

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.32  E-value=3e-12  Score=113.19  Aligned_cols=58  Identities=38%  Similarity=0.625  Sum_probs=55.7

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.+|++|+++++|+|.+|+|++||.|++||+|+++|+||++++|+||.+|+|.+|+
T Consensus         3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~   60 (371)
T PRK14875          3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQV   60 (371)
T ss_pred             eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEE
Confidence            4789999999999999999999999999999999999999999999999999999874

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.31  E-value=3.3e-12  Score=116.95  Aligned_cols=58  Identities=26%  Similarity=0.564  Sum_probs=56.3

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.||++|+++++|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+|+
T Consensus        92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~il  149 (463)
T PLN02226         92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFL  149 (463)
T ss_pred             eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEE
Confidence            5899999999999999999999999999999999999999999999999999999974

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.30  E-value=4.8e-11  Score=80.64  Aligned_cols=73  Identities=62%  Similarity=0.935  Sum_probs=69.7

Q ss_pred             EEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         45 EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        45 ~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ++.+|+++....+|+|.+|++..|+.+..|+.|+.++++|+...+.++.+|++.+.++..|+. +..|++|+.+
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence            478999999999999999999999999999999999999999999999999999999999999 9999999864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.29  E-value=1.1e-11  Score=98.67  Aligned_cols=60  Identities=30%  Similarity=0.542  Sum_probs=57.8

Q ss_pred             EEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         58 GTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        58 g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      |++..       |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus        88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i  154 (155)
T PRK06302         88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI  154 (155)
T ss_pred             EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence            77776       999999999999999999999999999999999999999999999 9999999987

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.29  E-value=5.3e-12  Score=114.64  Aligned_cols=59  Identities=36%  Similarity=0.735  Sum_probs=56.5

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      -..+.+|++|.++++|+|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.+|+
T Consensus        44 i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~  102 (418)
T PTZ00144         44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIF  102 (418)
T ss_pred             ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEE
Confidence            35899999999999999999999999999999999999999999999999999999874

>PRK06748 hypothetical protein; Validated

Probab=99.28  E-value=7e-12  Score=89.27  Aligned_cols=45  Identities=22%  Similarity=0.277  Sum_probs=42.5

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEee-cceeeeeeCCCCeEEEEcC
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQT-DKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~-~K~~~~i~a~~~G~v~~i~  219 (219)
                      .|+|.+|++++||.|++||+|+++|| ||++++|+||.+|+|.+|+
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~   57 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLE   57 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEE
Confidence            37899999999999999999999999 9999999999999999874

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.25  E-value=2.4e-11  Score=114.66  Aligned_cols=62  Identities=23%  Similarity=0.381  Sum_probs=60.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .|+|++|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus       533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~  594 (596)
T PRK14042        533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVE  594 (596)
T ss_pred             ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEe
Confidence            599999999999999999999999999999999999999999999999999 99999999985

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.21  E-value=3.9e-10  Score=89.42  Aligned_cols=53  Identities=26%  Similarity=0.456  Sum_probs=47.1

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+..|.      .|+|.+|++++||.|++||.|+++|+||+.++|.||.+|+|.+|+
T Consensus        84 ~~~v~ap~------~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~  136 (153)
T PRK05641         84 ENVVTAPM------PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKIL  136 (153)
T ss_pred             CCEEECCC------CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEE
Confidence            44566663      467999999999999999999999999999999999999999873

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.21  E-value=2.4e-11  Score=110.51  Aligned_cols=57  Identities=46%  Similarity=0.736  Sum_probs=55.1

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|++|.++++|+|.+|++++||.|++||+||++|+||+.++|+||++|+|.+|+
T Consensus         4 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~   60 (407)
T PRK05704          4 EIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL   60 (407)
T ss_pred             eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEE
Confidence            688999999999999999999999999999999999999999999999999999874

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.14  E-value=3.5e-10  Score=90.13  Aligned_cols=59  Identities=24%  Similarity=0.391  Sum_probs=51.4

Q ss_pred             ceeeccCCCCCCcccc-eeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEG-TIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~-~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+..|..|.++... .-..|++++||.|++||+||.+|+||++++|.|+.+|+|.+|+
T Consensus        80 ~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~  139 (156)
T TIGR00531        80 GHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEIL  139 (156)
T ss_pred             CCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEE
Confidence            4578999999887533 3345999999999999999999999999999999999999874

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.14  E-value=1.2e-10  Score=92.66  Aligned_cols=59  Identities=24%  Similarity=0.450  Sum_probs=52.0

Q ss_pred             ceeeccCCCCCCcccce-eeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGT-IVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~-i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+..|.+|.++.... -..|++++||.|++||+||.+|+||++++|.|+.+|+|.+|+
T Consensus        79 ~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~  138 (155)
T PRK06302         79 GHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEIL  138 (155)
T ss_pred             CCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEE
Confidence            45799999999875433 345999999999999999999999999999999999999874

>TIGR02712 urea_carbox urea carboxylase

Probab=99.14  E-value=1.4e-10  Score=117.46  Aligned_cols=63  Identities=29%  Similarity=0.390  Sum_probs=60.6

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..|+|.+|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus      1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence            3599999999999999999999999999999999999999999999999999 99999999873

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.13  E-value=7.6e-11  Score=110.03  Aligned_cols=61  Identities=67%  Similarity=1.065  Sum_probs=58.0

Q ss_pred             CCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       159 ~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      +.+..+.||.++.++++|+|.+|++++||.|++||+||++|+||+++|++|+.+|+|.+|+
T Consensus       110 ~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~  170 (539)
T PLN02744        110 PPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV  170 (539)
T ss_pred             CCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEE
Confidence            3477899999999999999999999999999999999999999999999999999999874

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.12  E-value=2.2e-10  Score=79.43  Aligned_cols=55  Identities=45%  Similarity=0.750  Sum_probs=51.8

Q ss_pred             eccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       164 i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      +.+|+++..+.++.+.+|++++|+.|++||+|+.+|+||+..+|.||.+|+|.++
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~   56 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKV   56 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEE
Confidence            5678888888899999999999999999999999999999999999999999986

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.12  E-value=1.4e-10  Score=80.30  Aligned_cols=44  Identities=23%  Similarity=0.397  Sum_probs=42.2

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      .|+|.+|++++||.|++||+|+.+|+||+..+|.||.+|+|.++
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i   53 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKV   53 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEE
Confidence            37899999999999999999999999999999999999999986

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.11  E-value=3.6e-10  Score=95.82  Aligned_cols=59  Identities=24%  Similarity=0.330  Sum_probs=49.2

Q ss_pred             ceeeccCCCCCCccccee-eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTI-VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i-~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      +..+..|..|.++..... ..|+|++||.|++||+|++||+||+.++|.|+.+|+|.+|+
T Consensus       197 ~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIl  256 (274)
T PLN02983        197 HPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEIL  256 (274)
T ss_pred             CCeEeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEe
Confidence            457788877766542111 25999999999999999999999999999999999999874

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.11  E-value=2.7e-10  Score=107.84  Aligned_cols=62  Identities=31%  Similarity=0.440  Sum_probs=60.0

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|+|++||.|++||+|+.||+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus       531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  592 (593)
T PRK14040        531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL  592 (593)
T ss_pred             ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            3599999999999999999999999999999999999999999999999999 9999999987

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.10  E-value=2e-10  Score=108.63  Aligned_cols=59  Identities=32%  Similarity=0.469  Sum_probs=56.6

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLI  115 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l  115 (219)
                      ..|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+. |.+|++|
T Consensus       524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l  582 (582)
T TIGR01108       524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL  582 (582)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence            3599999999999999999999999999999999999999999999999999 9999864

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.07  E-value=3.9e-10  Score=113.46  Aligned_cols=62  Identities=23%  Similarity=0.409  Sum_probs=60.1

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus      1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i 1142 (1143)
T TIGR01235      1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVL 1142 (1143)
T ss_pred             CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            4599999999999999999999999999999999999999999999999999 9999999987

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=99.02  E-value=9.7e-10  Score=104.22  Aligned_cols=63  Identities=30%  Similarity=0.430  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..|+|.+|+|++||.|++||+|+.||+||+..+|+||.+|+|.+++++.|+. |..|++|+.|.
T Consensus       529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~  591 (592)
T PRK09282        529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE  591 (592)
T ss_pred             CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence            3599999999999999999999999999999999999999999999999999 99999999884

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.96  E-value=1.4e-09  Score=100.32  Aligned_cols=63  Identities=32%  Similarity=0.506  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..|+|+.+.|++|+.|.+||+|+.+|+|||++.|+||.+|+|+++.+.+|+. |..|++|+.++
T Consensus       582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~  644 (645)
T COG4770         582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE  644 (645)
T ss_pred             CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence            3599999999999999999999999999999999999999999999999999 99999999875

>KOG0559|consensus

Probab=98.94  E-value=2.8e-10  Score=99.67  Aligned_cols=59  Identities=31%  Similarity=0.651  Sum_probs=56.3

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+++..|..++++++|.+.+|++++||.|++++.||+|||||.+++|+||.+|+|.+++
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~l  130 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELL  130 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEe
Confidence            56788999999999999999999999999999999999999999999999999999874

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.93  E-value=2.9e-09  Score=107.56  Aligned_cols=63  Identities=30%  Similarity=0.482  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..|+|.+|+|++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+. |..|+.|+.|+
T Consensus      1083 m~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999       1083 MPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred             ceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence            3599999999999999999999999999999999999999999999999999 99999999884

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=98.88  E-value=2.7e-09  Score=98.46  Aligned_cols=57  Identities=65%  Similarity=0.975  Sum_probs=54.9

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.++++++++++.+|++++||.|++||.|+++|+||++++++|+.+|+|.+|+
T Consensus         4 ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~   60 (464)
T PRK11892          4 EILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKIL   60 (464)
T ss_pred             ceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEE
Confidence            688999999999999999999999999999999999999999999999999999874

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.88  E-value=4.1e-09  Score=72.67  Aligned_cols=44  Identities=30%  Similarity=0.418  Sum_probs=42.1

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      .|.+.+|++++||.|++||+|+.+|+||+..++.|+.+|+|.++
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~   52 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKI   52 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEE
Confidence            37899999999999999999999999999999999999999886

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=98.85  E-value=6e-09  Score=94.98  Aligned_cols=57  Identities=46%  Similarity=0.724  Sum_probs=54.8

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.++.++.+|+|.+|++++||.|++||+|+++|+||+..++.||++|+|.+++
T Consensus         4 ~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~   60 (411)
T PRK11856          4 EFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLL   60 (411)
T ss_pred             eEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEe
Confidence            588999999999999999999999999999999999999999999999999999863

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.82  E-value=7.2e-09  Score=98.82  Aligned_cols=62  Identities=29%  Similarity=0.462  Sum_probs=59.8

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .|.|+++.|+.||+|++||+|+.+|+|||+..|.||.+|+|.+++|..||. |..|+.|..++
T Consensus      1087 pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038        1087 PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred             CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence            489999999999999999999999999999999999999999999999999 99999998764

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.77  E-value=9.5e-08  Score=90.55  Aligned_cols=44  Identities=27%  Similarity=0.445  Sum_probs=42.3

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus       534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~  577 (596)
T PRK14042        534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEIL  577 (596)
T ss_pred             eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEE
Confidence            78999999999999999999999999999999999999999874

>KOG0558|consensus

Probab=98.75  E-value=3.9e-09  Score=92.26  Aligned_cols=62  Identities=31%  Similarity=0.507  Sum_probs=58.3

Q ss_pred             CCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        158 SVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       158 ~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ......+++.++|+++.+.++.+|+|++||.|+.=|.||+|+.||++++|.+.++|+|++|+
T Consensus        61 ~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~  122 (474)
T KOG0558|consen   61 NSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIY  122 (474)
T ss_pred             ccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEe
Confidence            34467899999999999999999999999999999999999999999999999999999984

>PRK07051 hypothetical protein; Validated

Probab=98.68  E-value=3e-08  Score=70.23  Aligned_cols=57  Identities=25%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             eeeccCCCCCCcc-cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        162 QIINMPSLSPTMT-EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       162 ~~i~~P~lg~~~~-~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      +++.+|..|..+. ...-..|++++||.|++||.|+.+|+||+..+|.||.+|+|.++
T Consensus         4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i   61 (80)
T PRK07051          4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEF   61 (80)
T ss_pred             cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEE
Confidence            3566776665543 12223599999999999999999999999999999999999886

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.67  E-value=6.2e-08  Score=91.84  Aligned_cols=44  Identities=32%  Similarity=0.464  Sum_probs=42.2

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus       526 G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~  569 (582)
T TIGR01108       526 GSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREIL  569 (582)
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEE
Confidence            77999999999999999999999999999999999999999873

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.61  E-value=1.2e-07  Score=63.84  Aligned_cols=45  Identities=33%  Similarity=0.448  Sum_probs=42.0

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      -.|.+.+|++++|+.|++||.|+.++++|...+|.||.+|+|.++
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~   50 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEI   50 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEE
Confidence            347888999999999999999999999999999999999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.60  E-value=1.5e-07  Score=95.09  Aligned_cols=44  Identities=25%  Similarity=0.437  Sum_probs=42.4

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus      1083 G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~ 1126 (1143)
T TIGR01235      1083 GVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVL 1126 (1143)
T ss_pred             cEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEE
Confidence            78999999999999999999999999999999999999999874

This enzyme plays a role in gluconeogensis but not glycolysis.

>KOG0369|consensus

Probab=98.52  E-value=1.7e-07  Score=88.27  Aligned_cols=62  Identities=29%  Similarity=0.399  Sum_probs=59.9

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .|+|+++.|++|++|++||+|+.+.+|||++-|.||.+|+++++++..|+. +..|+.+++++
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence            599999999999999999999999999999999999999999999999999 99999998875

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.47  E-value=2.9e-07  Score=67.38  Aligned_cols=64  Identities=17%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             eeEEecCCCCCCCceEEEEE-EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439         43 QQEIKMPSLSPTMTEGTIVK-WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~-w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      ...+-|-+.+..+ -|.|.. |++++|+.|++||.|+.||++|+..++.||.+|+|.+++.+..+.
T Consensus        15 ~~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          15 IATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            3445454444332 377888 566669999999999999999999999999999999998877765

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.44  E-value=5.8e-07  Score=85.39  Aligned_cols=44  Identities=30%  Similarity=0.434  Sum_probs=42.1

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.+|+|++||.|++||+|+.+|+||+.++|.||.+|+|.+|+
T Consensus       533 G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~  576 (593)
T PRK14040        533 GNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIA  576 (593)
T ss_pred             EEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEE
Confidence            67999999999999999999999999999999999999999873

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.43  E-value=5.9e-07  Score=65.76  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=39.6

Q ss_pred             ceeee-EeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVK-WLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~-~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.. |++++|+.|++||.|+.+|++|+..+|.||.+|+|.++
T Consensus        29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~   72 (96)
T cd06848          29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEV   72 (96)
T ss_pred             CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEE
Confidence            66777 77788999999999999999999999999999999886

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>TIGR02712 urea_carbox urea carboxylase

Probab=98.40  E-value=3.7e-07  Score=92.98  Aligned_cols=45  Identities=31%  Similarity=0.381  Sum_probs=42.8

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .|.|.+|+|++||.|++||+|++||+||+.++|.||.+|+|++|+
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~ 1184 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKIL 1184 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEE
Confidence            378999999999999999999999999999999999999999874

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.34  E-value=3e-06  Score=56.69  Aligned_cols=55  Identities=60%  Similarity=0.949  Sum_probs=51.1

Q ss_pred             eccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       164 i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      +.+|.++.....+.+..|++..|+.+..|+.++.++++|+...+.++.+|++.+.
T Consensus         3 ~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~   57 (74)
T cd06849           3 IKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKI   57 (74)
T ss_pred             EECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEE
Confidence            5678888888899999999999999999999999999999999999999998754

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.27  E-value=1.4e-06  Score=65.50  Aligned_cols=43  Identities=19%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.-+.. ++|+.|++||+++.||++|+..+|.||.+|+|.++
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~v   73 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEV   73 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence            34444333 67999999999999999999999999999999987

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.27  E-value=5.3e-06  Score=79.76  Aligned_cols=44  Identities=32%  Similarity=0.472  Sum_probs=42.3

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.++.|+.||+|++||+|+++|+|||..-|.||.+|+|.+++
T Consensus      1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~ 1131 (1149)
T COG1038        1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVL 1131 (1149)
T ss_pred             CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEE
Confidence            88999999999999999999999999999999999999999873

>KOG0238|consensus

Probab=98.26  E-value=8.5e-07  Score=81.33  Aligned_cols=61  Identities=26%  Similarity=0.347  Sum_probs=58.7

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      -|.|.+++|++||.|++||.|+.+++|||...++||.+|++..+.++.|+. |..|.+|+++
T Consensus       609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~  669 (670)
T KOG0238|consen  609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF  669 (670)
T ss_pred             CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence            489999999999999999999999999999999999999999999999999 9999999876

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=98.25  E-value=3.2e-06  Score=75.28  Aligned_cols=36  Identities=8%  Similarity=0.084  Sum_probs=32.4

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      ..|+||++|+|.++.++.|+. |..|++|+.|.+.+.
T Consensus       209 ~~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~~  244 (346)
T PRK10476        209 TTVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTDH  244 (346)
T ss_pred             CEEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCCC
Confidence            358999999999999999999 999999999976653

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.25  E-value=1.8e-06  Score=80.11  Aligned_cols=43  Identities=33%  Similarity=0.543  Sum_probs=41.7

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|..+.|++|+.|.+||+|+++|+|||.+.|.||.+|+|.+|
T Consensus       584 G~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v  626 (645)
T COG4770         584 GTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKL  626 (645)
T ss_pred             ceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEE
Confidence            6799999999999999999999999999999999999999987

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.24  E-value=6.3e-06  Score=75.23  Aligned_cols=70  Identities=16%  Similarity=0.287  Sum_probs=59.8

Q ss_pred             ceEEEEEEE-eCCCCeEcCCCeEEEEecc------------------------------------------------Cce
Q psy10439         56 TEGTIVKWL-KKEGDAVAPGDVLCEIQTD------------------------------------------------KAV   86 (219)
Q Consensus        56 ~~g~i~~w~-v~~Gd~V~~gd~l~~iet~------------------------------------------------K~~   86 (219)
                      ..|.|.+++ +.+||.|++||+|++|++.                                                ...
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            359999998 9999999999999999831                                                013


Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCcccc
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQ  126 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~  126 (219)
                      ..|+||++|+|.++.+..|+. |..|++|+.|.+...-+.
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~~l~v  248 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDPVWV  248 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCCeEEE
Confidence            579999999999999999999 999999999987664433

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.21  E-value=2.2e-06  Score=64.42  Aligned_cols=49  Identities=16%  Similarity=0.294  Sum_probs=42.0

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT  106 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd  106 (219)
                      |.|..+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++-+..+
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~   79 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED   79 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence            56666655 66999999999999999999999999999999999755544

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.20  E-value=2.4e-06  Score=86.80  Aligned_cols=44  Identities=34%  Similarity=0.534  Sum_probs=42.3

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.+|++++||.|++||+|+.+|+||+.++|.||.+|+|++|+
T Consensus      1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~ 1128 (1146)
T PRK12999       1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVL 1128 (1146)
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEE
Confidence            88999999999999999999999999999999999999999873

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.19  E-value=9.4e-06  Score=77.29  Aligned_cols=45  Identities=33%  Similarity=0.462  Sum_probs=42.5

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .|.|.+|++++||.|++||+|+.+|+||+.++|.||.+|+|.+++
T Consensus       530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~  574 (592)
T PRK09282        530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEIL  574 (592)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEE
Confidence            378999999999999999999999999999999999999998863

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.18  E-value=4.5e-06  Score=63.05  Aligned_cols=43  Identities=19%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.-+.. ++|+.|++||.|+.||++|+..+|.||.+|+|.++
T Consensus        32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~v   75 (114)
T PRK00624         32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEV   75 (114)
T ss_pred             CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEE
Confidence            44444333 66999999999999999999999999999999986

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.15  E-value=8.7e-06  Score=71.75  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=32.6

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      ..|+||++|+|..+.++.|+. |..|++|+.|.+.+.
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~~  240 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAEQ  240 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCCc
Confidence            469999999999999999999 999999999976544

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.14  E-value=4.8e-06  Score=62.91  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE  104 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~  104 (219)
                      ..|-|-+.+.. .-|.|..+.. ++|+.|++||.+++||++|+..+|.||.+|+|.+++-..
T Consensus        19 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l   79 (114)
T PRK00624         19 VRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTAL   79 (114)
T ss_pred             EEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence            34444443332 2256666665 569999999999999999999999999999999986433

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=98.13  E-value=1.2e-05  Score=70.89  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=57.9

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------   84 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------   84 (219)
                      ..|+|.+++|++||.|++||+|+.++...                                                   
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~  133 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT  133 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            34999999999999999999999998721                                                   


Q ss_pred             -------------------ceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         85 -------------------AVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        85 -------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                                         ....|+||++|+|.++.++.|+. |..|++++.+.+...
T Consensus       134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~~~  190 (310)
T PRK10559        134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQNS  190 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeCCC
Confidence                               01359999999999999999999 999999999876543

>PRK13380 glycine cleavage system protein H; Provisional

Probab=98.13  E-value=4e-06  Score=65.92  Aligned_cols=63  Identities=14%  Similarity=0.159  Sum_probs=51.4

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeC-CCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKK-EGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT  106 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~-~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd  106 (219)
                      ...|-|-+.... .-|.|..+.++ +|+.|++||.++.||++|+..+|.||.+|+|.+++....+
T Consensus        30 ~~~vGitd~aq~-~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~   93 (144)
T PRK13380         30 TVTVGITDYAQT-MAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED   93 (144)
T ss_pred             EEEEecCHHHHH-hcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence            345555554433 23889998887 8999999999999999999999999999999999876544

>PRK13380 glycine cleavage system protein H; Provisional

Probab=98.10  E-value=6.8e-06  Score=64.62  Aligned_cols=43  Identities=19%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             ceeeeEeec-CCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKK-EGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~-~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|..+.++ +|+.|++||.++.||++|+..+|.||.+|+|.++
T Consensus        44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~v   87 (144)
T PRK13380         44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEV   87 (144)
T ss_pred             CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEE
Confidence            667776665 8999999999999999999999999999999986

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=98.06  E-value=1.1e-05  Score=70.18  Aligned_cols=66  Identities=26%  Similarity=0.401  Sum_probs=57.6

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA--------------------------------------------------   85 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~--------------------------------------------------   85 (219)
                      ..|+|.+++|++||.|++||+|+.+++...                                                  
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~  112 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE  112 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            349999999999999999999999975211                                                  


Q ss_pred             ---------------------eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         86 ---------------------VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        86 ---------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                                           ...|+||.+|+|..+.+..|+. +..|++|+.+.+..
T Consensus       113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~  169 (322)
T TIGR01730       113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDLD  169 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcCC
Confidence                                 2369999999999999999999 99999999997654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>KOG0368|consensus

Probab=98.00  E-value=1.2e-05  Score=81.17  Aligned_cols=66  Identities=23%  Similarity=0.512  Sum_probs=61.1

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      +.|++++|+|+.|++|..||.-++||.|||.+.+.|+.+|+| +...++|+. +..|.+|+.+..+.+
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDdp  757 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDDP  757 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCCh
Confidence            569999999999999999999999999999999999999998 777899999 999999999875543

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.96  E-value=1.1e-05  Score=62.11  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=33.7

Q ss_pred             cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        184 KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       184 ~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ++|++|++||+++.||++|+..+|.||.+|+|.++
T Consensus        45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v   79 (127)
T TIGR00527        45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEV   79 (127)
T ss_pred             CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEe
Confidence            68999999999999999999999999999999986

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.92  E-value=1.6e-05  Score=61.30  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=33.7

Q ss_pred             cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        184 KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       184 ~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ++|+.|++||+++.||++|+..+|.||.+|+|.++
T Consensus        46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~v   80 (127)
T PRK01202         46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEV   80 (127)
T ss_pred             CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEE
Confidence            67999999999999999999999999999999986

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=97.91  E-value=4.3e-05  Score=69.39  Aligned_cols=66  Identities=26%  Similarity=0.312  Sum_probs=55.2

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------   84 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------   84 (219)
                      ..|+|.+++|++||.|++||+|+.|+...                                                   
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~  151 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  151 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            34999999999999999999999998510                                                   


Q ss_pred             --------------------ceeeEecCCCeEEEEEEecCCCeeeecCcE--EEEEeecC
Q psy10439         85 --------------------AVMSFETEEEGILAKILVPENTTDVKVGTL--IAVMVEEG  122 (219)
Q Consensus        85 --------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~--l~~i~~~~  122 (219)
                                          ....|+||++|+|.+.+++.|+. |..|++  |+.+.+..
T Consensus       152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~  210 (397)
T PRK15030        152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLD  210 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEecC
Confidence                                01359999999999999999999 999985  67765444

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.90  E-value=4.1e-05  Score=69.51  Aligned_cols=36  Identities=11%  Similarity=0.130  Sum_probs=32.6

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      ..|+||++|+|..+.++.|+. |..|++|+.|.+...
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~~  251 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPATN  251 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCCc
Confidence            369999999999999999999 999999999976553

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.90  E-value=5e-05  Score=68.60  Aligned_cols=66  Identities=21%  Similarity=0.270  Sum_probs=55.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA--------------------------------------------------   85 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~--------------------------------------------------   85 (219)
                      ..|+|.++++++||.|++||+|+.|+....                                                  
T Consensus        70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~  149 (385)
T PRK09578         70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER  149 (385)
T ss_pred             CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            459999999999999999999999977210                                                  


Q ss_pred             ---------------------eeeEecCCCeEEEEEEecCCCeeeecC--cEEEEEeecC
Q psy10439         86 ---------------------VMSFETEEEGILAKILVPENTTDVKVG--TLIAVMVEEG  122 (219)
Q Consensus        86 ---------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G--~~l~~i~~~~  122 (219)
                                           ...|+||++|+|.+.+++.|+. |..|  .+|+.|.+..
T Consensus       150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~~  208 (385)
T PRK09578        150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQLD  208 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEecC
Confidence                                 1369999999999999999999 9885  4888886543

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.89  E-value=4.4e-05  Score=58.81  Aligned_cols=76  Identities=16%  Similarity=0.176  Sum_probs=52.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCC---Ceeee---cC-cEE
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN---TTDVK---VG-TLI  115 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~G---d~~V~---~G-~~l  115 (219)
                      ..|-|-+.+.. .=|.|..+.. +.|++|++||.++.||++|...+|.||.+|+|.+++....   +. +.   -| .-|
T Consensus        24 ~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl  101 (127)
T PRK01202         24 ATVGITDHAQE-QLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWL  101 (127)
T ss_pred             EEEeeCHHHHh-hcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceE
Confidence            44444443322 2256655554 5699999999999999999999999999999999954433   33 33   33 367


Q ss_pred             EEEeec
Q psy10439        116 AVMVEE  121 (219)
Q Consensus       116 ~~i~~~  121 (219)
                      +.+...
T Consensus       102 ~~v~~~  107 (127)
T PRK01202        102 FKIKPS  107 (127)
T ss_pred             EEEEeC
Confidence            776543

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=97.82  E-value=6.9e-05  Score=67.71  Aligned_cols=66  Identities=23%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------   84 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------   84 (219)
                      ..|+|.++++++||.|++||+|+.|+...                                                   
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~  147 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN  147 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            35999999999999999999999998620                                                   


Q ss_pred             --------------------ceeeEecCCCeEEEEEEecCCCeeeecCc--EEEEEeecC
Q psy10439         85 --------------------AVMSFETEEEGILAKILVPENTTDVKVGT--LIAVMVEEG  122 (219)
Q Consensus        85 --------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~--~l~~i~~~~  122 (219)
                                          ....|+||++|+|.+.+++.|+. |..|+  +|+.+.+..
T Consensus       148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~  206 (385)
T PRK09859        148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRLD  206 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEecC
Confidence                                11469999999999999999999 99985  688776544

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.80  E-value=5.4e-05  Score=66.93  Aligned_cols=35  Identities=11%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ..|+||++|+|..+.+..|+. |..|++|+.|.+..
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~~  238 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLTR  238 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecCC
Confidence            479999999999999999999 99999999997554

>KOG0369|consensus

Probab=97.74  E-value=4.7e-05  Score=72.25  Aligned_cols=43  Identities=28%  Similarity=0.418  Sum_probs=41.8

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |+|+++.|++|++|++||+|+.+.+|||.+=|.||.+|+|+++
T Consensus      1115 G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v 1157 (1176)
T KOG0369|consen 1115 GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKV 1157 (1176)
T ss_pred             CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEE
Confidence            7799999999999999999999999999999999999999986

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.74  E-value=4.1e-05  Score=49.27  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=26.5

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      .|+|.+|+|++||.|++||+|+.+++...
T Consensus        10 ~G~V~~v~V~~G~~VkkGd~L~~ld~~~~   38 (50)
T PF13533_consen   10 SGRVESVYVKEGQQVKKGDVLLVLDSPDL   38 (50)
T ss_pred             CEEEEEEEecCCCEEcCCCEEEEECcHHH
Confidence            59999999999999999999999987654

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.73  E-value=4.4e-05  Score=58.80  Aligned_cols=49  Identities=18%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT  106 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd  106 (219)
                      |.|..+.. ++|++|++||.++.||++|+..+|.||.+|+|.+++-..-+
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   85 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED   85 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence            55555543 57999999999999999999999999999999998755433

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK12784 hypothetical protein; Provisional

Probab=97.67  E-value=0.00037  Score=48.46  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCc-eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~-~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      -.|+|.++++.+++.|-+.+.|+-|+++.. ...|.-..+|.|..++++.|+. |..+..|+.++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence            359999999999999999999999998655 5568889999999999999999 9999999998754

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=97.66  E-value=0.00013  Score=66.82  Aligned_cols=65  Identities=22%  Similarity=0.321  Sum_probs=54.4

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccC---------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------   84 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K---------------------------------------------------   84 (219)
                      ..|+|.++++++||.|++||+|+.|+...                                                   
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~  173 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS  173 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            45999999999999999999999996521                                                   


Q ss_pred             --------------------ceeeEecCCCeEEEEEEecCCCeeeecCc--EEEEEeec
Q psy10439         85 --------------------AVMSFETEEEGILAKILVPENTTDVKVGT--LIAVMVEE  121 (219)
Q Consensus        85 --------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~--~l~~i~~~  121 (219)
                                          ....|+||++|+|..+.+..|+. |..|+  +++.|.+.
T Consensus       174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~~  231 (415)
T PRK11556        174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQT  231 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEecC
Confidence                                02369999999999999999999 99984  67776543

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=97.64  E-value=0.00019  Score=64.46  Aligned_cols=65  Identities=17%  Similarity=0.204  Sum_probs=54.3

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK----------------------------------------------------   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K----------------------------------------------------   84 (219)
                      .|.|.++++++||.|++||+|+.++...                                                    
T Consensus        69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~  148 (370)
T PRK11578         69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT  148 (370)
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            4999999999999999999999998631                                                    


Q ss_pred             ---------------------------------ceeeEecCCCeEEEEEEecCCCeeeecC---cEEEEEeecC
Q psy10439         85 ---------------------------------AVMSFETEEEGILAKILVPENTTDVKVG---TLIAVMVEEG  122 (219)
Q Consensus        85 ---------------------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G---~~l~~i~~~~  122 (219)
                                                       ....|+||++|+|..+++..|+. |..|   .+|+.|.+..
T Consensus       149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~~  221 (370)
T PRK11578        149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS  221 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcE-eecccCCceEEEEecCC
Confidence                                             01269999999999999999999 9765   3688775543

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.60  E-value=0.00012  Score=47.05  Aligned_cols=36  Identities=19%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      +..|.+|.+|+|.++++++|+. |+.|++|+.+....
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDSPD   37 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECcHH
Confidence            3578999999999999999999 99999999997543

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.54  E-value=0.0002  Score=54.77  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE  104 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~  104 (219)
                      |.|+.+.. ++|+.+++|+.++.||+.|...++.||.+|+|.+++-..
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l   78 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL   78 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence            55555544 559999999999999999999999999999999987543

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=97.47  E-value=0.00012  Score=63.79  Aligned_cols=25  Identities=40%  Similarity=0.625  Sum_probs=19.7

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT   82 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet   82 (219)
                      .|+| +|+|++||.|++||+|+.+++
T Consensus        29 ~G~v-~~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   29 SGRV-SVNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             -EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred             CEEE-EEEeCCcCEECCCCEEEEEEC
Confidence            4999 999999999999999999988

...

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=97.44  E-value=0.00034  Score=53.47  Aligned_cols=43  Identities=28%  Similarity=0.402  Sum_probs=33.8

Q ss_pred             ceeeeEe-ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWL-KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~-v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|..+. .++|+.+++|++++.||+.|+..++.||.+|+|.++
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~v   74 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEV   74 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEE
Confidence            4454433 366999999999999999999999999999999986

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.37  E-value=0.00057  Score=60.15  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=29.0

Q ss_pred             eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      .|+||++|+|..+++..|+. |.. ++|+.|.+...
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~-v~~-~~l~~i~~~~~  239 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEV-IGS-EGILEMGDTSQ  239 (327)
T ss_pred             EEECCCCeEEEEEecCCCCc-cCC-CccEEEecCCc
Confidence            57899999999999999998 886 88888876543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=97.34  E-value=0.00024  Score=54.60  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=34.0

Q ss_pred             ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        183 KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       183 v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      .++|+.|++|+.++.||+-|+..+|.||.+|+|.++
T Consensus        47 pe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvev   82 (131)
T COG0509          47 PEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEV   82 (131)
T ss_pred             CCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEe
Confidence            478899999999999999999999999999999886

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=97.27  E-value=0.0014  Score=59.92  Aligned_cols=65  Identities=28%  Similarity=0.358  Sum_probs=53.1

Q ss_pred             CCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCC
Q psy10439         93 EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT  172 (219)
Q Consensus        93 ~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~  172 (219)
                      ..|.|.++++++||. |..|++|+.++.+.....                                     +..|     
T Consensus        13 ~eg~i~~w~v~~Gd~-V~~g~~l~~vEtdK~~~e-------------------------------------i~a~-----   49 (403)
T TIGR01347        13 TEGTVAEWHKKVGDT-VKRDENIVEIETDKVVLE-------------------------------------VPSP-----   49 (403)
T ss_pred             ceEEEEEEEeCCcCE-eCCCCEEEEEEEcceeeE-------------------------------------EecC-----
Confidence            469999999999999 999999999976543211                                     1111     


Q ss_pred             cccceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                       .+|.+.++++++|+.|..|++|+.++.+
T Consensus        50 -~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        50 -ADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             -CCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence             3589999999999999999999999865

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00056  Score=52.60  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=45.9

Q ss_pred             eeEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE  104 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~  104 (219)
                      ...|-|-+.+.. .=|.|+-+.. +.|+.|++|+.++.||+-|+..++.||.+|.|.+++-..
T Consensus        25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l   86 (131)
T COG0509          25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEAL   86 (131)
T ss_pred             EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhh
Confidence            334444444332 2266666644 779999999999999999999999999999998887443

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=97.09  E-value=0.0031  Score=56.51  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      .|+||.+|+|.+..+..|++ |..|.+|+.+.+...
T Consensus       210 ~IrAP~dG~V~~~~v~~G~~-V~~G~~l~alVp~~~  244 (352)
T COG1566         210 VIRAPVDGYVTNLSVRVGQY-VSAGTPLMALVPLDS  244 (352)
T ss_pred             EEECCCCceEEeecccCCCe-ecCCCceEEEecccc
Confidence            39999999999999999999 999999999877543

>KOG0238|consensus

Probab=97.08  E-value=0.00047  Score=63.73  Aligned_cols=43  Identities=30%  Similarity=0.402  Sum_probs=41.2

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.+++|++||+|++||.|+.+++||+..-+.||.+|+|+.+
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v  652 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDV  652 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeE
Confidence            5789999999999999999999999999999999999999876

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=97.07  E-value=0.0017  Score=55.07  Aligned_cols=34  Identities=12%  Similarity=0.110  Sum_probs=30.6

Q ss_pred             eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      .|+||++|+|..+.+..|+. |..|++|+.|.+..
T Consensus        90 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~~  123 (265)
T TIGR00999        90 EVRSPFDGYITQKSVTLGDY-VAPQAELFRVADLG  123 (265)
T ss_pred             EEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcCC
Confidence            47999999999999999999 99999999987644

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.95  E-value=0.0015  Score=48.33  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=37.7

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      -|...+..|++||+|++||.|+.-+. -....|-|+.+|+|..|
T Consensus        38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I   80 (101)
T PF13375_consen   38 IGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAI   80 (101)
T ss_pred             CCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEE
Confidence            36667899999999999999999874 55789999999999987

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=96.94  E-value=0.0043  Score=56.90  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCC
Q psy10439         93 EEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPT  172 (219)
Q Consensus        93 ~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~  172 (219)
                      ..|.|.++++++||. |..|++|+.++.+.....                                     +..|     
T Consensus        11 ~eg~i~~w~v~~Gd~-V~~g~~l~~vEtdK~~~e-------------------------------------v~a~-----   47 (416)
T PLN02528         11 AECELLRWFVKEGDQ-VEEFQPLCEVQSDKATIE-------------------------------------ITSR-----   47 (416)
T ss_pred             cEEEEEEEEeCCCCE-ECCCCEEEEEEeCceeEE-------------------------------------EecC-----
Confidence            468999999999999 999999999975543211                                     1111     


Q ss_pred             cccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        173 MTEGTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       173 ~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                       ..|.+.+|++++|+.|..|++|+.++.+.
T Consensus        48 -~~G~v~~i~v~~G~~v~vG~~l~~i~~~~   76 (416)
T PLN02528         48 -YKGKVAQINFSPGDIVKVGETLLKIMVED   76 (416)
T ss_pred             -CCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence             34889999999999999999999997654

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=96.88  E-value=0.0039  Score=53.25  Aligned_cols=59  Identities=29%  Similarity=0.427  Sum_probs=49.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      .|.+ +..++.||.|++||+|+.|..    .+|+||.+|+|.- ++++|-. |..|..|+.|.+-.
T Consensus       172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~-V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLT-VTEGLKIGDVDPRG  230 (256)
T ss_pred             CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCC-cCCCCEEEEECCCC
Confidence            3555 559999999999999999975    7999999999954 5678888 99999999986543

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=96.82  E-value=0.0057  Score=45.21  Aligned_cols=47  Identities=19%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecC
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE  104 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~  104 (219)
                      -|.-.+-.|++||.|++||.|++-+. -....|.|+.+|+|..+.-..
T Consensus        38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~   84 (101)
T PF13375_consen   38 IGAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRP   84 (101)
T ss_pred             CCCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeE
Confidence            36666889999999999999999974 568899999999999987544

>PRK12784 hypothetical protein; Provisional

Probab=96.69  E-value=0.013  Score=40.93  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=58.6

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeecc
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINM  166 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~  166 (219)
                      -+|.||.-|+|.++++.++++ |-.=.+|+.|..-+....                                    ++. 
T Consensus         6 e~iyS~~~G~Vekifi~esSy-VYEWEkL~~I~~~dg~le------------------------------------~v~-   47 (84)
T PRK12784          6 EEICSSYEGKVEEIFVNESSY-VYEWEKLMMIRKNNGELE------------------------------------KVA-   47 (84)
T ss_pred             hhhcCccccEEEEEEEcCCce-EEeeeeeeEEeecCCcEE------------------------------------EEE-
Confidence            358999999999999999999 999999999864432211                                    011 


Q ss_pred             CCCCCCcccceeeeEeecCCCeecCCCeEEEEeecce
Q psy10439        167 PSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKA  203 (219)
Q Consensus       167 P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~  203 (219)
                        +|   -.|.|....|.+||.|..+..|+.+|.|-.
T Consensus        48 --vG---iSG~I~~v~Ve~Gq~i~~dtlL~~~edDll   79 (84)
T PRK12784         48 --VG---ISGNIRLVNVVVGQQIHTDTLLVRLEDDLL   79 (84)
T ss_pred             --Ee---eeeeEEEEEeecCceecCCcEEEEEeeceE
Confidence              11   248899999999999999999999998853

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=96.54  E-value=0.0096  Score=54.97  Aligned_cols=67  Identities=27%  Similarity=0.320  Sum_probs=53.1

Q ss_pred             CCCeEEEEEEecCCCeeeecCcEEEEEeecCccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCC
Q psy10439         92 EEEGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSP  171 (219)
Q Consensus        92 p~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~  171 (219)
                      -.+|.|.++++++||. |..|++|+.++.+.....                                     +..|    
T Consensus        11 ~~eg~i~~w~v~~Gd~-V~~g~~l~~vetdKa~~e-------------------------------------i~a~----   48 (435)
T TIGR01349        11 MTTGNLAKWLKKEGDK-VNPGDVIAEIETDKATME-------------------------------------FEAV----   48 (435)
T ss_pred             cceEEEEEEEeCCCCc-cCCCCEEEEEEecceeeE-------------------------------------EcCC----
Confidence            3578999999999999 999999999965443211                                     1111    


Q ss_pred             CcccceeeeEeecCCCe-ecCCCeEEEEeecc
Q psy10439        172 TMTEGTIVKWLKKEGDA-VVPGDVLCEIQTDK  202 (219)
Q Consensus       172 ~~~~~~i~~~~v~~Gd~-V~~g~~l~~ve~~K  202 (219)
                        ..|.+.++++++|+. |..|++|+.++.+.
T Consensus        49 --~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~   78 (435)
T TIGR01349        49 --EEGYLAKILVPEGTKDVPVNKPIAVLVEEK   78 (435)
T ss_pred             --CCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence              348899999999999 99999999997653

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>COG3608 Predicted deacylase [General function prediction only]

Probab=96.39  E-value=0.011  Score=52.47  Aligned_cols=60  Identities=28%  Similarity=0.418  Sum_probs=48.7

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEecc---CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTD---KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~---K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ++-+++.+|+.||+|++||.|+.|-..   +...+|+|+.+|+|..+....  . ++.|+.++.+.
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~  325 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVG  325 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeec
Confidence            466789999999999999999999764   678999999999998876433  4 66776666654

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=96.25  E-value=0.0072  Score=51.78  Aligned_cols=44  Identities=34%  Similarity=0.400  Sum_probs=37.1

Q ss_pred             EEEEEEeCCCCeEcCCCeEEEEeccCce--eeEecCCCeEEEEEEecCCCe
Q psy10439         59 TIVKWLKKEGDAVAPGDVLCEIQTDKAV--MSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        59 ~i~~w~v~~Gd~V~~gd~l~~iet~K~~--~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      -.-+..|++||+|+.||+|++   ||..  +-+.||.+|+|.+|.-  |++
T Consensus        39 ~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r   84 (257)
T PF05896_consen   39 MKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER   84 (257)
T ss_pred             CCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence            335899999999999999998   7764  6678999999999874  665

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=96.23  E-value=0.0055  Score=52.51  Aligned_cols=37  Identities=41%  Similarity=0.498  Sum_probs=32.8

Q ss_pred             eeEeecCCCeecCCCeEEEEeecceeee--eeCCCCeEEEEc
Q psy10439        179 VKWLKKEGDAVVPGDVLCEIQTDKAVMS--FETEEEGILAKI  218 (219)
Q Consensus       179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~--i~a~~~G~v~~i  218 (219)
                      -+.+|++||+|+.||+|+.   ||..-+  +.||.+|+|.+|
T Consensus        41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I   79 (257)
T PF05896_consen   41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAI   79 (257)
T ss_pred             ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEE
Confidence            4788999999999999998   786655  789999999987

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=96.21  E-value=0.038  Score=50.49  Aligned_cols=116  Identities=14%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             EEEEeccC-ceeeEecCCCeEEEEEE-ecCCCeeeecCcEEEEEeecCccccc--cc-cccCCCCccccC-------CCC
Q psy10439         77 LCEIQTDK-AVMSFETEEEGILAKIL-VPENTTDVKVGTLIAVMVEEGEDWQN--VS-VSATSPSATASA-------SSA  144 (219)
Q Consensus        77 l~~iet~K-~~~~i~ap~~G~v~~i~-v~~Gd~~V~~G~~l~~i~~~~~~~~~--~~-~~~~~~a~~a~a-------~a~  144 (219)
                      ...|+.+. ....|.++.+|+|.+++ +..||. |+.|++|+.|...+-..+.  .. ............       ...
T Consensus       113 ~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~-VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~  191 (409)
T PRK09783        113 PANVSYNEYQYAIVQARAAGFIDKVYPLTVGDK-VQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAG  191 (409)
T ss_pred             eEEEEECCCceEEEeCCcCEEEEEEEecCCCCE-ECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Confidence            34455443 35679999999999998 899999 9999999999643211000  00 000000000000       000


Q ss_pred             CCCCC-CCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEe
Q psy10439        145 SPPPP-PPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQ  199 (219)
Q Consensus       145 a~~~a-~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve  199 (219)
                      .+... ..-...........|..|      -.|.|.+..+.+|+.|..|+.|+.|.
T Consensus       192 i~~~~i~~l~~~~~~~~~~~I~AP------~dGvV~~~~v~~G~~V~~g~~L~~I~  241 (409)
T PRK09783        192 MPEADIRRLIATRKIQTRFTLKAP------IDGVITAFDLRAGMNIAKDNVVAKIQ  241 (409)
T ss_pred             CCHHHHHHHHHcCCCCCcEEEECC------CCeEEEEEECCCCCEECCCCeEEEEE
Confidence            00000 000000011123467777      35889999999999999999999984

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.14  E-value=0.027  Score=49.08  Aligned_cols=58  Identities=22%  Similarity=0.300  Sum_probs=45.2

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEecc--CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~--K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      +-+.+..++.||.|++||+|+.|..-  ....+++||.+|+|.-+.  ..-. |..|+.++.|
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI  286 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence            34457899999999999999999652  234789999999995554  4445 8888888865

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.10  E-value=0.027  Score=49.43  Aligned_cols=59  Identities=29%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec---cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT---DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet---~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      .+-+....++.||.|++||.|++|-.   +....++.||.+|+|.-+..  .-. |..|+.|+.|
T Consensus       236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~--~p~-v~~G~~l~~i  297 (298)
T cd06253         236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLRE--YPL-VYEGSLVARI  297 (298)
T ss_pred             CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeec--CCe-ecCCceEEEe
Confidence            35567888999999999999999965   34577899999999977654  446 8899988876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>KOG0368|consensus

Probab=96.07  E-value=0.0078  Score=61.78  Aligned_cols=45  Identities=29%  Similarity=0.528  Sum_probs=42.3

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..|+..+|+|+.|++|..||+-+++|.|||.+.+.|+.+|+|.-|
T Consensus       692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i  736 (2196)
T KOG0368|consen  692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLI  736 (2196)
T ss_pred             CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEEEe
Confidence            458899999999999999999999999999999999999999865

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=95.88  E-value=0.044  Score=48.39  Aligned_cols=60  Identities=25%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEecc----CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~----K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .+-+....++.||.|++||+|++|-.-    ....+++||.+|+|.-+...  -. |..|+.|+.+.
T Consensus       251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~--~~-v~~G~~l~~i~  314 (316)
T cd06252         251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPP--GL-VRRGDCLAVLA  314 (316)
T ss_pred             CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCC--Cc-cCCCCEEEEEe
Confidence            456778999999999999999998653    44678999999999866543  34 77888888774

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=95.82  E-value=0.038  Score=49.78  Aligned_cols=59  Identities=27%  Similarity=0.403  Sum_probs=46.7

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      .|-+...+++.||.|++||.|++|-.    +....+|.||.+|+|.-+.  ..-. |..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~-V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRF-VRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCcc-ccCCCeEEEe
Confidence            46677899999999999999999954    2334457999999987665  4446 8889988876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>PF13437 HlyD_3: HlyD family secretion protein

Probab=95.60  E-value=0.023  Score=41.40  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=29.3

Q ss_pred             eEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      .|+||++|+|..+.++.|+. |..|++|+.+.+..
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~   34 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDTD   34 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEccc
Confidence            37899999999999999999 99999999887653

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=95.55  E-value=0.06  Score=47.88  Aligned_cols=59  Identities=25%  Similarity=0.477  Sum_probs=47.3

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      .+-+....++.||.|++||.|++|-.    .....++.||.+|+|.-+.  ..-. |..|+.|+.+
T Consensus       262 ~~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i  324 (325)
T TIGR02994       262 DDGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL  324 (325)
T ss_pred             CCeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence            35566889999999999999999965    2246789999999998755  4456 8889988875

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=95.43  E-value=0.025  Score=44.69  Aligned_cols=49  Identities=29%  Similarity=0.313  Sum_probs=36.6

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCce-eeEecCCCeEEEEEEecC
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-MSFETEEEGILAKILVPE  104 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~-~~i~ap~~G~v~~i~v~~  104 (219)
                      .+|..+-..+.+||.|.+||.|+.+.|.|-. .-++||.+|+|.-+.--.
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p  136 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIP  136 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEET
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecC
Confidence            4677788899999999999999999999996 559999999998776433

; PDB: 3D4R_D.

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.97  E-value=0.044  Score=46.92  Aligned_cols=47  Identities=26%  Similarity=0.433  Sum_probs=38.0

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..-+..|.-|       +....++.||.|++||+|+.+..    .+|.||.+|+|..+
T Consensus       164 Er~IrAp~~G-------i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl  210 (256)
T TIGR03309       164 ERVLRAPADG-------IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL  210 (256)
T ss_pred             eEEEECCCCe-------EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE
Confidence            3456666443       44668999999999999999965    79999999999865

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=94.79  E-value=0.037  Score=51.24  Aligned_cols=42  Identities=26%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |...+.+|++||+|++||+|++-... ....+.||.+|+|++|
T Consensus        38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I   79 (447)
T TIGR01936        38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAI   79 (447)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEE
Confidence            55667999999999999999985322 5677999999999987

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=94.76  E-value=0.064  Score=49.71  Aligned_cols=44  Identities=25%  Similarity=0.282  Sum_probs=37.1

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV  102 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v  102 (219)
                      |.-.+..|++||+|+.||+|++-.. -....+.||.+|+|..|.-
T Consensus        38 G~~~k~~Vk~GD~V~~Gq~I~~~~~-~~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        38 GMRPKMKVRPGDKVKAGQPLFEDKK-NPGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEec
Confidence            5666899999999999999998542 2578899999999999953

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=94.75  E-value=0.031  Score=48.09  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=24.0

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ..|.++..|+|.+++|++|+. |+.|++|+.|++.
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~~   35 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDPT   35 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--H
T ss_pred             EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEee
Confidence            468899999999999999999 9999999999753

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=94.68  E-value=0.023  Score=48.90  Aligned_cols=27  Identities=33%  Similarity=0.565  Sum_probs=20.2

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQT   82 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet   82 (219)
                      ..|.|.+++|++||.|++||+|++|+.
T Consensus         8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~   34 (305)
T PF00529_consen    8 VGGIVTEILVKEGQRVKKGQVLARLDP   34 (305)
T ss_dssp             S-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred             CCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence            349999999999999999999999985

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=94.54  E-value=0.046  Score=50.65  Aligned_cols=42  Identities=31%  Similarity=0.391  Sum_probs=35.3

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |...+.+|++||+|++||.|+.-... ....+.||.+|+|++|
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I   80 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAI   80 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEE
Confidence            55668999999999999999964332 4678999999999987

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=94.43  E-value=0.12  Score=44.91  Aligned_cols=56  Identities=16%  Similarity=0.261  Sum_probs=41.9

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec--cCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT--DKAVMSFETEEEGILAKILVPENTTDVKVGTLI  115 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet--~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l  115 (219)
                      .+-+.+.+++.||.|++||+|++|-.  .....+|.||.+|+|.-+...  -. |..|+.|
T Consensus       230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l  287 (288)
T cd06254         230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL  287 (288)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence            45677888999999999999999843  244678999999999776543  23 5555544

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=94.21  E-value=0.093  Score=46.65  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=30.4

Q ss_pred             eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ...|.++.+|+|.++++++|+. |+.|++|+.|+..
T Consensus        48 ~v~v~~~v~G~V~~v~V~~G~~-VkkGq~L~~ld~~   82 (346)
T PRK10476         48 VVHVASEVGGRIVELAVTENQA-VKKGDLLFRIDPR   82 (346)
T ss_pred             eEEEcccCceEEEEEEeCCCCE-EcCCCEEEEECcH
Confidence            6778889999999999999998 9999999998754

>KOG3373|consensus

Probab=94.20  E-value=0.031  Score=44.38  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        183 KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       183 v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      -++|..|.+||.++.+|.=|+..+|.+|.+|+|.+|
T Consensus        88 Pe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEi  123 (172)
T KOG3373|consen   88 PEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEI  123 (172)
T ss_pred             CCCCCccccCcceeeeeehhhhhhhhCcCCceEEEe
Confidence            367889999999999999999999999999999997

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=94.19  E-value=0.083  Score=46.41  Aligned_cols=42  Identities=19%  Similarity=0.383  Sum_probs=34.7

Q ss_pred             EEeccCceeeEecCCC---eEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         79 EIQTDKAVMSFETEEE---GILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        79 ~iet~K~~~~i~ap~~---G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .|+...-...|.++.+   |+|.++++++|+. |+.|++|+.|++.
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~~G~~L~~ld~~   50 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQAGQVLAELDSR   50 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCE-ecCCcEEEEecCc
Confidence            3444444567889999   9999999999999 9999999999764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=94.16  E-value=0.062  Score=48.02  Aligned_cols=41  Identities=34%  Similarity=0.447  Sum_probs=35.2

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCc--eeeEecCCCeEEEEEEecCCCe
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKA--VMSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~--~~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      ..+|++||.|++||+|++   ||-  .+-+.||.+|+|..|+  .|+.
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~--RG~K   84 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIH--RGEK   84 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEee--cccc
Confidence            578999999999999998   776  4678999999999987  5555

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=94.10  E-value=0.069  Score=46.94  Aligned_cols=37  Identities=14%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             ceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         85 AVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        85 ~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ....|.++.+|+|.++++++|+. |+.|++|+.|+...
T Consensus        41 ~~~~v~a~~~G~V~~i~v~~G~~-V~kGq~L~~ld~~~   77 (334)
T TIGR00998        41 NQLQVSSQVSGSVIEVNVDDTDY-VKQGDVLVRLDPTN   77 (334)
T ss_pred             ceEEEcccCceEEEEEEeCCCCE-EcCCCEEEEECchH
Confidence            36788999999999999999999 99999999997543

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=93.91  E-value=0.064  Score=49.51  Aligned_cols=42  Identities=19%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |...+..|++||+|++||+|+.-+ ......|.||.+|+|++|
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i   81 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAI   81 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEe
Confidence            455678999999999999999972 225788999999999987

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=93.69  E-value=0.062  Score=48.05  Aligned_cols=37  Identities=38%  Similarity=0.487  Sum_probs=31.3

Q ss_pred             eEeecCCCeecCCCeEEEEeeccee--eeeeCCCCeEEEEcC
Q psy10439        180 KWLKKEGDAVVPGDVLCEIQTDKAV--MSFETEEEGILAKIL  219 (219)
Q Consensus       180 ~~~v~~Gd~V~~g~~l~~ve~~K~~--~~i~a~~~G~v~~i~  219 (219)
                      ..+|.+||.|++||+|++   ||-.  .-+.||.+|+|.+|.
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~   80 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIH   80 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEee
Confidence            467899999999999998   5644  448999999999883

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=93.63  E-value=0.18  Score=46.63  Aligned_cols=53  Identities=19%  Similarity=0.273  Sum_probs=39.5

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |+|-.+-...|          .|....-...|.++..|+|.+++|++||. |+.|++|+.+.+.
T Consensus        41 ~~~~~~v~a~G----------~v~p~~~~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~~   93 (457)
T TIGR01000        41 AKKEIVIRTTG----------TIEPAKILSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDNG   93 (457)
T ss_pred             EeeeEEEEEeE----------EEEecCceEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECch
Confidence            45545555555          33434445678899999999999999999 9999999999753

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=93.37  E-value=0.16  Score=40.16  Aligned_cols=44  Identities=32%  Similarity=0.392  Sum_probs=33.3

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeee-eeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS-FETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~-i~a~~~G~v~~i  218 (219)
                      +|...-..+.+|+.|.+||.|+.+.|-|-..- +.||.+|+|.-|
T Consensus        88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v  132 (150)
T PF09891_consen   88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFV  132 (150)
T ss_dssp             ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEE
T ss_pred             cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEE
Confidence            56777788999999999999999999997665 999999999754

; PDB: 3D4R_D.

>COG3608 Predicted deacylase [General function prediction only]

Probab=93.36  E-value=0.16  Score=45.20  Aligned_cols=44  Identities=30%  Similarity=0.468  Sum_probs=38.7

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeec---ceeeeeeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTD---KAVMSFETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~---K~~~~i~a~~~G~v~~i  218 (219)
                      ++-+.+.+++.||+|++||+|+.+-..   +...||.|+.+|+|..+
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~  309 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIAR  309 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEE
Confidence            445789999999999999999999775   78899999999999764

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=93.31  E-value=0.09  Score=48.76  Aligned_cols=44  Identities=30%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV  102 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v  102 (219)
                      |.-.+..|++||+|++||.|++-... .+..+.||.+|+|..|..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            55668899999999999999964422 468899999999999953

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=93.12  E-value=0.21  Score=45.78  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             EEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         60 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        60 i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.-..++.|+.-..=+....|+. .-...|.++.+|+|.++++++|+. |+.|++|+.|.+.
T Consensus        62 V~v~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~~-VkkGq~La~ld~~  121 (415)
T PRK11556         62 VQAATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQQ-VKAGDLLAEIDPR  121 (415)
T ss_pred             eEEEEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCCE-ecCCCEEEEECcH
Confidence            44445555554444445567776 356789999999999999999999 9999999999754

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=93.12  E-value=0.91  Score=34.76  Aligned_cols=26  Identities=31%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      |+--++++++||.|++||+|+.+.-+
T Consensus        79 g~gF~~~vk~Gd~V~~G~~l~~~D~~  104 (124)
T cd00210          79 GEGFTSHVEEGQRVKQGDKLLEFDLP  104 (124)
T ss_pred             CCceEEEecCCCEEcCCCEEEEEcHH
Confidence            56678999999999999999998543

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=93.12  E-value=0.71  Score=35.74  Aligned_cols=27  Identities=41%  Similarity=0.501  Sum_probs=20.7

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      |+.-++++++||+|++||+|+.+.-++
T Consensus        83 G~gF~~~v~~G~~V~~G~~L~~~D~~~  109 (132)
T PF00358_consen   83 GEGFETLVKEGDKVKAGQPLIEFDLEK  109 (132)
T ss_dssp             TTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred             CcceEEEEeCCCEEECCCEEEEEcHHH
Confidence            667899999999999999999985444

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=92.98  E-value=0.12  Score=47.61  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=36.6

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL  101 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~  101 (219)
                      |.-.+-.|++||+|+.||.|++.+ ......+.||.+|+|.+|.
T Consensus        40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            444578999999999999999973 3358899999999999986

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>KOG3373|consensus

Probab=92.92  E-value=0.079  Score=42.12  Aligned_cols=42  Identities=19%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439         66 KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        66 ~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      +.|-.|.+||.++.+|+=|+..+|.+|.+|.|.+|+-+-.+.
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En  130 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN  130 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence            678999999999999999999999999999999998765553

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=92.83  E-value=0.29  Score=44.25  Aligned_cols=56  Identities=14%  Similarity=0.098  Sum_probs=44.1

Q ss_pred             EeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         64 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        64 ~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .++.|+....-+....|+.. -...|.++.+|+|.++++++|+. |+.|++|+.|++.
T Consensus        40 ~v~~~~~~~~~~~~G~v~~~-~~~~l~~~v~G~V~~i~v~~G~~-VkkGqvLa~ld~~   95 (385)
T PRK09859         40 TLSPGSVNVLSELPGRTVPY-EVAEIRPQVGGIIIKRNFIEGDK-VNQGDSLYQIDPA   95 (385)
T ss_pred             EeEEEeccceEEEEEEEEEE-EEEEEeccCcEEEEEEEcCCcCE-ecCCCEEEEECcH
Confidence            44555544444556677655 36789999999999999999999 9999999999754

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.82  E-value=0.21  Score=45.06  Aligned_cols=33  Identities=36%  Similarity=0.556  Sum_probs=26.0

Q ss_pred             eeeccCCCCCCcccceeeeEee-cCCCeecCCCeEEEEee
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLK-KEGDAVVPGDVLCEIQT  200 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v-~~Gd~V~~g~~l~~ve~  200 (219)
                      ..+..|      -.|.|..+.+ .+|+.|..|++|+.+-.
T Consensus       272 ~~i~AP------~dG~V~~~~~~~~G~~v~~g~~l~~i~~  305 (423)
T TIGR01843       272 LIIRSP------VDGTVQSLKVHTVGGVVQPGETLMEIVP  305 (423)
T ss_pred             cEEECC------CCcEEEEEEEEccCceecCCCeeEEEec
Confidence            456666      4577888775 79999999999999953

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=92.80  E-value=0.14  Score=50.10  Aligned_cols=42  Identities=21%  Similarity=0.301  Sum_probs=34.8

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |...+.+|++||+|.+||+|+.-.. -....|.||.+|+|..|
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I   87 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAI   87 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeee
Confidence            5556789999999999999996432 14688999999999987

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=92.74  E-value=0.28  Score=44.02  Aligned_cols=41  Identities=20%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             EEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         79 EIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        79 ~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .++.. -...|.++.+|+|.++++++|+. |+.|++|+.+...
T Consensus        55 ~v~~~-~~~~l~a~~~G~V~~v~v~~G~~-V~kG~~L~~ld~~   95 (370)
T PRK11578         55 KLDAL-RKVDVGAQVSGQLKTLSVAIGDK-VKKDQLLGVIDPE   95 (370)
T ss_pred             EEEee-eEEEEecccceEEEEEEcCCCCE-EcCCCEEEEECcH
Confidence            44433 35689999999999999999999 9999999999653

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=92.70  E-value=0.14  Score=44.43  Aligned_cols=40  Identities=20%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             EEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         79 EIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        79 ~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      .++.  -...+.++.+|+| ++++++|+. |..|++|+.+....
T Consensus        16 ~v~~--~~~~v~~~~~G~v-~~~v~~G~~-V~kG~~L~~ld~~~   55 (328)
T PF12700_consen   16 TVEP--NEVSVSAPVSGRV-SVNVKEGDK-VKKGQVLAELDSSD   55 (328)
T ss_dssp             EEEE--SEEEE--SS-EEE-EE-S-TTSE-EETT-EEEEEE-HH
T ss_pred             EEEE--EEEEEECCCCEEE-EEEeCCcCE-ECCCCEEEEEEChh
Confidence            4443  5677999999999 999999999 99999999997543

...

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=92.70  E-value=1.1  Score=36.25  Aligned_cols=27  Identities=30%  Similarity=0.376  Sum_probs=23.2

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      |+--+++++.||+|++||+|+++.-+.
T Consensus       101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~  127 (169)
T PRK09439        101 GEGFKRIAEEGQRVKVGDPIIEFDLPL  127 (169)
T ss_pred             CCceEEEecCCCEEeCCCEEEEEcHHH
Confidence            667899999999999999999985443

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=92.67  E-value=0.11  Score=48.54  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=36.7

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.-...+|++||+|.+||.|..-+.  -+..+.||.+|+|.+|
T Consensus        42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I   82 (529)
T COG4656          42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAI   82 (529)
T ss_pred             CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeee
Confidence            4456789999999999999998776  8899999999999987

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=92.65  E-value=0.16  Score=43.95  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ...+.+|.+|+|.+++++.|+. |+.|++|+.+...
T Consensus        26 ~~~v~a~~~G~V~~i~v~~G~~-V~kG~~L~~l~~~   60 (322)
T TIGR01730        26 EADLAAEVAGKITKISVREGQK-VKKGQVLARLDDD   60 (322)
T ss_pred             EEEEEccccEEEEEEEcCCCCE-EcCCCEEEEECCH
Confidence            5679999999999999999999 9999999999653

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=92.63  E-value=0.16  Score=44.87  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.1

Q ss_pred             eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ...|.++.+|+|.++++++||. |+.|++|+.+...
T Consensus        43 ~i~v~a~~~G~V~~i~v~~Gd~-V~kG~~L~~ld~~   77 (331)
T PRK03598         43 TVNLGFRVGGRLASLAVDEGDA-VKAGQVLGELDAA   77 (331)
T ss_pred             EEEeecccCcEEEEEEcCCCCE-EcCCCEEEEEChH
Confidence            5678999999999999999999 9999999999654

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=92.58  E-value=1.2  Score=34.01  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=23.0

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      |+--+++++.||+|++||+|+.+.-+.
T Consensus        79 G~gF~~~v~~Gd~V~~G~~l~~~D~~~  105 (121)
T TIGR00830        79 GEGFTSHVEEGQRVKKGDPLLEFDLKA  105 (121)
T ss_pred             CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence            566789999999999999999986443

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=92.56  E-value=0.13  Score=35.81  Aligned_cols=29  Identities=31%  Similarity=0.400  Sum_probs=21.6

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   84 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K   84 (219)
                      ..+.=..++++.||.|++||+|++|=++.
T Consensus        29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   29 DPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            33444589999999999999999997654

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=92.52  E-value=0.17  Score=44.58  Aligned_cols=35  Identities=17%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ..|.++.+|+|.++++++|+. |+.|++|+.++...
T Consensus        48 v~i~~~v~G~V~~v~V~~Gd~-VkkGqvLa~Ld~~~   82 (310)
T PRK10559         48 VAIAPDVSGLITQVNVHDNQL-VKKGQVLFTIDQPR   82 (310)
T ss_pred             EEEccCCceEEEEEEeCCcCE-EcCCCEEEEECcHH
Confidence            458999999999999999999 99999999997643

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=92.51  E-value=0.12  Score=46.49  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=28.8

Q ss_pred             EecCCCeEEEEEEe-cCCCeeeecCcEEEEEeec
Q psy10439         89 FETEEEGILAKILV-PENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        89 i~ap~~G~v~~i~v-~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |+||++|+|..+.+ ..|+. |..|++|+.|.+.
T Consensus       274 i~AP~dG~V~~~~~~~~G~~-v~~g~~l~~i~~~  306 (423)
T TIGR01843       274 IRSPVDGTVQSLKVHTVGGV-VQPGETLMEIVPE  306 (423)
T ss_pred             EECCCCcEEEEEEEEccCce-ecCCCeeEEEecC
Confidence            88999999999876 69999 9999999999754

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=92.45  E-value=0.2  Score=45.56  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ...|.++.+|+|.++++++|+. |+.|++|+.|++.
T Consensus        61 ~v~v~a~v~G~V~~v~V~~Gd~-VkkGqvL~~LD~~   95 (390)
T PRK15136         61 QVQIMSQVSGSVTKVWADNTDF-VKEGDVLVTLDPT   95 (390)
T ss_pred             EEEEeccCCeEEEEEEcCCCCE-ECCCCEEEEECcH
Confidence            6788999999999999999999 9999999999754

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.30  E-value=0.27  Score=44.98  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=27.0

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT  200 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~  200 (219)
                      .+..|      -.|.|....+.+|+.|..|++|+.|..
T Consensus       255 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~~  286 (421)
T TIGR03794       255 RIVSQ------HSGRVIELNYTPGQLVAAGAPLASLEV  286 (421)
T ss_pred             eEEcC------CCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence            45566      467899999999999999999999954

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=92.19  E-value=0.38  Score=43.41  Aligned_cols=56  Identities=11%  Similarity=0.092  Sum_probs=42.3

Q ss_pred             EeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         64 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        64 ~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .++.++.-..-.....|+.. -...|.++.+|+|.++++++|+. |+.|++|+.|.+.
T Consensus        42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~-VkkGq~La~ld~~   97 (385)
T PRK09578         42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQE-VKQGAVLFRIDPA   97 (385)
T ss_pred             EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCE-EcCCCEEEEECCH
Confidence            44444433333444566654 46789999999999999999999 9999999999653

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.15  E-value=0.41  Score=41.66  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=33.7

Q ss_pred             eeeEeecCCCeecCCCeEEEEeec--ceeeeeeCCCCeEEEEc
Q psy10439        178 IVKWLKKEGDAVVPGDVLCEIQTD--KAVMSFETEEEGILAKI  218 (219)
Q Consensus       178 i~~~~v~~Gd~V~~g~~l~~ve~~--K~~~~i~a~~~G~v~~i  218 (219)
                      +....++.||.|++||+|+.+...  ....++.||.+|+|..+
T Consensus       229 ~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~  271 (287)
T cd06251         229 LLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR  271 (287)
T ss_pred             EEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe
Confidence            567899999999999999999542  23478999999999653

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=92.15  E-value=0.17  Score=46.28  Aligned_cols=32  Identities=13%  Similarity=0.186  Sum_probs=29.4

Q ss_pred             eEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         88 SFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        88 ~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .|+||++|+|..+.+..|+. |..|++|+.|..
T Consensus       255 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~  286 (421)
T TIGR03794       255 RIVSQHSGRVIELNYTPGQL-VAAGAPLASLEV  286 (421)
T ss_pred             eEEcCCCeEEEEeeCCCCCE-ecCCCcEEEEEc
Confidence            48899999999999999999 999999999953

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.02  E-value=0.61  Score=40.75  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEecc--CceeeEecCCCeEEEEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKI  100 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~--K~~~~i~ap~~G~v~~i  100 (219)
                      +-+.+..++.||.|++||.|++|-.-  ....++.||.+|+|.-+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            55667888999999999999988542  22456889999988665

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=91.96  E-value=0.4  Score=42.05  Aligned_cols=43  Identities=30%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEee---cceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQT---DKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~---~K~~~~i~a~~~G~v~~i  218 (219)
                      +-+....++.||.|++||+|.+|=.   +....++.||.+|+|-.+
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~  282 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL  282 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe
Confidence            3367888999999999999999955   345778999999999754

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=91.87  E-value=0.26  Score=34.30  Aligned_cols=29  Identities=31%  Similarity=0.378  Sum_probs=22.5

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      +.+.-..++++.||.|++||+|+.|-++.
T Consensus        29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   29 DPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            34555789999999999999999997665

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.83  E-value=0.17  Score=46.90  Aligned_cols=27  Identities=26%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEec
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQT   82 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet   82 (219)
                      ..|.|.+++|++||.|++||+|+.++.
T Consensus        66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~   92 (457)
T TIGR01000        66 SNNAIKENYLKENKFVKKGDLLVVYDN   92 (457)
T ss_pred             CCcEEEEEEcCCCCEecCCCEEEEECc
Confidence            349999999999999999999999987

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=91.38  E-value=0.44  Score=42.95  Aligned_cols=43  Identities=30%  Similarity=0.438  Sum_probs=33.9

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEe----ecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQ----TDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve----~~K~~~~i~a~~~G~v~~i  218 (219)
                      +-+....+++||.|++||+|+.|-    .+....+|.||.+|+|..+
T Consensus       297 ~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~  343 (359)
T cd06250         297 GGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR  343 (359)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe
Confidence            446789999999999999999993    2233444699999998754

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=90.97  E-value=0.34  Score=43.98  Aligned_cols=42  Identities=12%  Similarity=0.170  Sum_probs=35.7

Q ss_pred             EEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         78 CEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        78 ~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ..++. .-...|.+..+|+|.++++++|+. |+.|++|+.|+..
T Consensus        58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~-VkkGqvLa~ld~~   99 (397)
T PRK15030         58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSD-IEAGVSLYQIDPA   99 (397)
T ss_pred             EEEEE-EEEEEEEecCcEEEEEEEcCCCCE-ecCCCEEEEECCH
Confidence            34543 346789999999999999999999 9999999999754

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.80  E-value=0.65  Score=40.40  Aligned_cols=43  Identities=16%  Similarity=0.258  Sum_probs=34.9

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEee--cceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQT--DKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~--~K~~~~i~a~~~G~v~~i  218 (219)
                      +-+...+++.||.|++||+|+.+-.  .....+|.||.+|+|..+
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~  275 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYN  275 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            4467888999999999999999933  234678999999998653

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=90.73  E-value=0.56  Score=41.41  Aligned_cols=42  Identities=24%  Similarity=0.351  Sum_probs=34.9

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeec----ceeeeeeCCCCeEEEE
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTD----KAVMSFETEEEGILAK  217 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~----K~~~~i~a~~~G~v~~  217 (219)
                      +-+....++.||.|++||+|+.|-..    ....++.||.+|+|..
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~  297 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAA  297 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEE
Confidence            33678889999999999999999553    3466899999999865

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.66  E-value=0.62  Score=36.14  Aligned_cols=46  Identities=24%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceee-EecCCCeEEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMS-FETEEEGILAKIL  101 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~-i~ap~~G~v~~i~  101 (219)
                      .||-++.--+..|+.|.+||+++-+.|.|..+. +++|.+|++.-+.
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~  144 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID  144 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence            468999999999999999999999999998755 8899999987654

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=90.27  E-value=0.28  Score=48.01  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=36.0

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL  101 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~  101 (219)
                      |.-.+..|++||+|.+||+|++-. .-.+..|.||.+|+|..|.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence            555678999999999999999653 2356889999999999986

>PF13437 HlyD_3: HlyD family secretion protein

Probab=89.93  E-value=0.71  Score=33.38  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=25.5

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   83 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~   83 (219)
                      ..|.|..+.+++|+.|..|+.|+.|...
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            4599999999999999999999999864

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=89.72  E-value=0.36  Score=41.68  Aligned_cols=65  Identities=26%  Similarity=0.418  Sum_probs=52.8

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEec-c-------------------------------------C-----c-------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQT-D-------------------------------------K-----A-------   85 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet-~-------------------------------------K-----~-------   85 (219)
                      ..|.|.+++|++||.|++||+|+.++. .                                     +     .       
T Consensus        73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~  152 (372)
T COG0845          73 VAGIVAEILVKEGDRVKKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVSQAELDAAQA  152 (372)
T ss_pred             cccEEEEEEccCCCeecCCCEEEEECCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            469999999999999999999999987 0                                     0     0       


Q ss_pred             ------------------------eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         86 ------------------------VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        86 ------------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                                              ...+.+|.+|++....+..|+. +..++.+..+...
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~~g~~~~~~~~~g~~-v~~~~~~~~~~~~  211 (372)
T COG0845         153 LLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGARLVRVGQL-VSAGQALATIADL  211 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCeeEEeCCCCceEeeeEcCcCce-EcCCCcceEEEEe
Confidence                                    0118999999999999999999 9988666655433

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=89.68  E-value=0.72  Score=41.01  Aligned_cols=43  Identities=23%  Similarity=0.486  Sum_probs=35.1

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeec----ceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTD----KAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~----K~~~~i~a~~~G~v~~i  218 (219)
                      +-+....++.||.|++||+|+.|-.-    ....++.||.+|+|-.+
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~  309 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAAR  309 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEE
Confidence            33677889999999999999999652    24668999999998653

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=89.50  E-value=0.38  Score=45.11  Aligned_cols=42  Identities=24%  Similarity=0.273  Sum_probs=37.1

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL  101 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~  101 (219)
                      |.=....|++||+|.+||.|..=+.  ....+.||.+|+|.+|.
T Consensus        42 g~~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          42 GAPGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             CCccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            4445789999999999999998775  88889999999999998

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=89.07  E-value=3.9  Score=33.38  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             eEEEEEEEeCCCCeEc--------CCCeE-EEEeccCceeeEecCCCeEE-EEE--EecCCCeeeecCcEEEEEeecCcc
Q psy10439         57 EGTIVKWLKKEGDAVA--------PGDVL-CEIQTDKAVMSFETEEEGIL-AKI--LVPENTTDVKVGTLIAVMVEEGED  124 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~--------~gd~l-~~iet~K~~~~i~ap~~G~v-~~i--~v~~Gd~~V~~G~~l~~i~~~~~~  124 (219)
                      .|+|.+....+|+...        .++.+ +.+|++...+-+.. ..|.+ .++  ++++|+. +..|+.++.+.-.   
T Consensus        80 ~G~v~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~-v~~~~~~~i~~~~~~g~~-v~kGeeiG~f~fG---  154 (189)
T TIGR00164        80 GGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQ-IAGFVARRIVCYVKEGEK-VSRGQRIGMIRFG---  154 (189)
T ss_pred             ccEEEEEEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEE-ECeEEccEEEEecCCCCE-EecCcEEEEEecC---
Confidence            5888888888886332        34443 56676543222221 12322 222  4567887 8888888877421   


Q ss_pred             ccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEE
Q psy10439        125 WQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCE  197 (219)
Q Consensus       125 ~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~  197 (219)
                                                         +...+.+|.       +  .+|.+++||+|+-||.|+-
T Consensus       155 -----------------------------------Stv~ll~p~-------~--~~~~v~~G~~V~~G~tli~  183 (189)
T TIGR00164       155 -----------------------------------SRVDLYLPE-------N--AQAQVKVGEKVTAGETVLA  183 (189)
T ss_pred             -----------------------------------CeEEEEEcC-------C--CccccCCCCEEEeceEEEE
Confidence                                               123455552       1  3678999999999997753

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=88.16  E-value=1.5  Score=35.88  Aligned_cols=53  Identities=25%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA  116 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~  116 (219)
                      ++|.. ++++|+.+++||.+.-++-. .++.+-.|.+   .++.++.|+. |..|+.|.
T Consensus       130 ~~i~~-~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~-V~~G~tli  182 (189)
T TIGR00164       130 RRIVC-YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK-VTAGETVL  182 (189)
T ss_pred             cEEEE-ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE-EEeceEEE
Confidence            34433 45899999999999999966 6666777765   3788999999 99999764

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=88.05  E-value=1.3  Score=38.10  Aligned_cols=59  Identities=31%  Similarity=0.415  Sum_probs=45.8

Q ss_pred             EEEEEEEeCCCCeEcCCCeE--EEEec--cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         58 GTIVKWLKKEGDAVAPGDVL--CEIQT--DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l--~~iet--~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      +-+....++.||.|++||+|  ..+-.  +-...++.||.+|+|.-+  ...-. |..|+.|+.+.
T Consensus       228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~--~~~~~-v~~G~~l~~v~  290 (292)
T PF04952_consen  228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFI--RESPY-VEQGDALAKVA  290 (292)
T ss_dssp             SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESE--CTSSE-CTTTEEEEEEE
T ss_pred             cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEe--Ccccc-cCCCCeEEEEe
Confidence            55669999999999999999  55532  233568999999999544  46667 88999998774

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=87.89  E-value=0.47  Score=33.82  Aligned_cols=22  Identities=59%  Similarity=1.103  Sum_probs=18.3

Q ss_pred             EEEEeCCCCeEcCCCeEEEEec
Q psy10439         61 VKWLKKEGDAVAPGDVLCEIQT   82 (219)
Q Consensus        61 ~~w~v~~Gd~V~~gd~l~~iet   82 (219)
                      ++|+++.|+.|++|+.|++++-
T Consensus        47 v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   47 VEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEeCCCCCccCCcEEEEEEe
Confidence            4799999999999999999985

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=87.65  E-value=1.7  Score=34.61  Aligned_cols=29  Identities=41%  Similarity=0.486  Sum_probs=25.5

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      +|+--+-+|++||+|++||.|+++.-+..
T Consensus        85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I  113 (156)
T COG2190          85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI  113 (156)
T ss_pred             CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence            47777999999999999999999988754

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=87.51  E-value=1.6  Score=36.13  Aligned_cols=52  Identities=25%  Similarity=0.252  Sum_probs=41.9

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEE
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLI  115 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l  115 (219)
                      +.|.. ++++|+.+++||.+.-++-. .++++--|.+   .++.++.|++ |..|+.+
T Consensus       150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k-V~~Getv  201 (206)
T PRK05305        150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK-VVAGETV  201 (206)
T ss_pred             cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE-EEcccEE
Confidence            45544 56899999999999999976 5677777765   3889999999 9999855

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=87.39  E-value=1.2  Score=38.94  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeec--ceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTD--KAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~--K~~~~i~a~~~G~v~~i  218 (219)
                      +-+....++.|+.|++||+|+.|-.-  ....++.||.+|+|-.+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            44678899999999999999999321  12456899999998653

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=87.13  E-value=1.3  Score=34.36  Aligned_cols=45  Identities=24%  Similarity=0.362  Sum_probs=40.2

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeee-eeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS-FETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~-i~a~~~G~v~~i  218 (219)
                      .+|-+...-..+|+.|.+||.++-+.+-|.... +.+|.+|+|.-|
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi  143 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI  143 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence            467888888999999999999999999998777 789999999765

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=87.09  E-value=1.9  Score=37.13  Aligned_cols=41  Identities=29%  Similarity=0.401  Sum_probs=34.1

Q ss_pred             EEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         78 CEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        78 ~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      ..++. .....+.++..|.+.++++++|+. |+.|+.|+.+++
T Consensus        59 G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~   99 (372)
T COG0845          59 GRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDP   99 (372)
T ss_pred             eEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECC
Confidence            34444 334478888999999999999999 999999999976

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=86.66  E-value=1.1  Score=40.39  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=30.8

Q ss_pred             eeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         86 VMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        86 ~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ...|-+..+|+|.++++.+++. |+.|++|+.|++.
T Consensus        53 vv~Iap~VsG~V~eV~V~dnq~-Vk~Gd~L~~iD~~   87 (352)
T COG1566          53 VVPIAPQVSGRVTEVNVKDNQL-VKKGDVLFRIDPR   87 (352)
T ss_pred             EEEEcCcCceEEEEEEecCCCE-ecCCCeEEEECcH
Confidence            4567888899999999999999 9999999999764

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=86.58  E-value=0.68  Score=35.30  Aligned_cols=29  Identities=28%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      +|+--+++|++||+|++||.|+++.-+..
T Consensus        78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i  106 (121)
T TIGR00830        78 NGEGFTSHVEEGQRVKKGDPLLEFDLKAI  106 (121)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHHHH
Confidence            46667999999999999999999876543

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins

Probab=86.57  E-value=4.7  Score=36.67  Aligned_cols=52  Identities=21%  Similarity=0.264  Sum_probs=31.4

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe-------cCCCeeeecCcEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV-------PENTTDVKVGTLIA  116 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v-------~~Gd~~V~~G~~l~  116 (219)
                      +|+-..+.|.+-...       +...+..-.+|-|-.+|+|.++.+       +.||. |..||+|.
T Consensus       167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~-VkkGdvLI  225 (385)
T PF06898_consen  167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDT-VKKGDVLI  225 (385)
T ss_pred             EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCCE-ECCCCEEE
Confidence            566666666654433       222234456788888888888765       44555 55555554

YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=86.54  E-value=3.6  Score=40.05  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=24.1

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      .|+--+.+|++||+|++||+|+++.-++
T Consensus       578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~  605 (648)
T PRK10255        578 EGKGFKRLVEEGAQVSAGQPILEMDLDY  605 (648)
T ss_pred             CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence            4677889999999999999999996554

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=86.31  E-value=8.3  Score=31.91  Aligned_cols=92  Identities=18%  Similarity=0.219  Sum_probs=55.7

Q ss_pred             ceEEEEEEEeCCCCeEcC--------CC-eEEEEeccCce-ee---EecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         56 TEGTIVKWLKKEGDAVAP--------GD-VLCEIQTDKAV-MS---FETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~--------gd-~l~~iet~K~~-~~---i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      -+|+|.++...+|+....        ++ .+..+|+++.. +.   +-+-..+.+. .++.+|+. +..|+.++.+.-. 
T Consensus        98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~-v~kGe~~G~f~fG-  174 (206)
T PRK05305         98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDE-VERGERFGLIRFG-  174 (206)
T ss_pred             ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCE-EccCcEEeEEecC-
Confidence            368999988888874443        33 33466665321 21   2222222221 24577888 9999988887421 


Q ss_pred             ccccccccccCCCCccccCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEE
Q psy10439        123 EDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLC  196 (219)
Q Consensus       123 ~~~~~~~~~~~~~a~~a~a~a~a~~~a~~~aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~  196 (219)
                                                           +...+.+|.       +  .+|.+++||+|+.||.++
T Consensus       175 -------------------------------------StV~l~~p~-------~--~~~~V~~G~kV~~Getvi  202 (206)
T PRK05305        175 -------------------------------------SRVDVYLPL-------G--TEPLVSVGQKVVAGETVL  202 (206)
T ss_pred             -------------------------------------CeEEEEEcC-------C--CcccccCCCEEEcccEEE
Confidence                                                 123455552       1  278899999999999664

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=85.79  E-value=0.83  Score=34.98  Aligned_cols=29  Identities=28%  Similarity=0.290  Sum_probs=24.5

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      +|+--++++++||+|++||+|+++.-+..
T Consensus        78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~i  106 (124)
T cd00210          78 NGEGFTSHVEEGQRVKQGDKLLEFDLPAI  106 (124)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHHHH
Confidence            46777999999999999999999876543

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=84.09  E-value=1.1  Score=31.91  Aligned_cols=24  Identities=54%  Similarity=0.938  Sum_probs=19.1

Q ss_pred             eeeEeecCCCeecCCCeEEEEeec
Q psy10439        178 IVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       178 i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      -.+|++++|+.|++||+|++++.+
T Consensus        46 ~v~~~~~dG~~v~~g~~i~~i~G~   69 (88)
T PF02749_consen   46 EVEWLVKDGDRVEPGDVILEIEGP   69 (88)
T ss_dssp             EEEESS-TT-EEETTCEEEEEEEE
T ss_pred             EEEEEeCCCCCccCCcEEEEEEeC
Confidence            357999999999999999999753

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=83.14  E-value=1.1  Score=36.08  Aligned_cols=29  Identities=28%  Similarity=0.365  Sum_probs=24.2

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      +|+--+++|++||+|++||+|+++.-+..
T Consensus       100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i  128 (169)
T PRK09439        100 KGEGFKRIAEEGQRVKVGDPIIEFDLPLL  128 (169)
T ss_pred             CCCceEEEecCCCEEeCCCEEEEEcHHHH
Confidence            46777899999999999999999876543

>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria

Probab=82.75  E-value=2.9  Score=34.35  Aligned_cols=58  Identities=26%  Similarity=0.337  Sum_probs=43.9

Q ss_pred             ceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439         56 TEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIA  116 (219)
Q Consensus        56 ~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~  116 (219)
                      .-|+|.-+.- ++|+.|++||.+..++= -.++.+--|.+-.. ++.++.|+. |..|+.|+
T Consensus       143 ~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~~-V~~Ge~i~  201 (202)
T PF02666_consen  143 LVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQK-VRAGETIG  201 (202)
T ss_pred             eeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCCE-EEeeeEEe
Confidence            3467766554 69999999999999986 55555555544333 889999999 99999886

The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=82.31  E-value=0.83  Score=35.36  Aligned_cols=29  Identities=38%  Similarity=0.483  Sum_probs=22.2

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      +|+--+++|++||+|++||+|+++.-++.
T Consensus        82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~i  110 (132)
T PF00358_consen   82 NGEGFETLVKEGDKVKAGQPLIEFDLEKI  110 (132)
T ss_dssp             TTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred             CCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence            46677999999999999999999986554

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional

Probab=82.30  E-value=11  Score=42.20  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=37.2

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      .++|+.|+.|++|+.||+..  --+..|-+..+|++.-..+.+|-.
T Consensus      2423 ~l~v~~g~~V~~g~~la~wd--p~~~piisE~~G~v~f~d~~~g~t 2466 (2836)
T PRK14844       2423 KLYVDEGGSVKIGDKVAEWD--PYTLPIITEKTGTVSYQDLKDGIS 2466 (2836)
T ss_pred             EEEecCCCEecCCCEEEEEc--CCCcceEeecceEEEEEEEeccee
Confidence            57899999999999999875  557778899999998887777765

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=81.96  E-value=2.2  Score=41.21  Aligned_cols=29  Identities=34%  Similarity=0.452  Sum_probs=25.1

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~   85 (219)
                      +|+--+.+|++||+|++||.|++++-++.
T Consensus       542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i  570 (610)
T TIGR01995       542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI  570 (610)
T ss_pred             CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence            57777999999999999999999987644

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=81.14  E-value=6.7  Score=37.95  Aligned_cols=28  Identities=36%  Similarity=0.462  Sum_probs=24.2

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      +|+--+.++++||+|++||+|+++.-++
T Consensus       542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~  569 (610)
T TIGR01995       542 NGEGFEILVKVGDHVKAGQLLLTFDLDK  569 (610)
T ss_pred             CCCCeEEEecCcCEEcCCCEEEEecHHH
Confidence            4777899999999999999999995544

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=80.34  E-value=6.2  Score=38.29  Aligned_cols=28  Identities=29%  Similarity=0.410  Sum_probs=24.0

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      +|+--+.++++||+|++||+|+++.-++
T Consensus       558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~  585 (627)
T PRK09824        558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA  585 (627)
T ss_pred             CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence            4677899999999999999999996544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		4e-26
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		1e-16
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		8e-26
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		2e-16
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		4e-19
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		2e-12
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		4e-19
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		2e-12
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		2e-18
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		2e-12
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		3e-18
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		1e-11
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		4e-10
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		3e-06
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		8e-10
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		4e-06
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		5e-07
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		3e-06
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		6e-07
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		3e-05
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		3e-05
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		3e-04
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		5e-05

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 71/83 (85%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E
Sbjct: 9   KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 68
Query: 105 NTTDVKVGTLIAVMVEEGEDWQN 127
            + ++++G+LI ++VEEGEDW++
Sbjct: 69  GSKNIRLGSLIGLIVEEGEDWKH 91

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 47/56 (83%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I MPSLSPTM EG IVKWLKKEG+AV  GD LCEI+TDKAV++ +  ++GILAKI+
Sbjct: 10  ILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 61/82 (74%)
Query: 43  QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILV
Sbjct: 27  HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILV 86
Query: 103 PENTTDVKVGTLIAVMVEEGED 124
           PE T DV +GT + ++VE+  D
Sbjct: 87  PEGTRDVPLGTPLCIIVEKEAD 108

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +EEG LAKIL
Sbjct: 32  LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 85

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 61/82 (74%)
Query: 43  QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILV
Sbjct: 9   HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILV 68
Query: 103 PENTTDVKVGTLIAVMVEEGED 124
           PE T DV +GT + ++VE+  D
Sbjct: 69  PEGTRDVPLGTPLCIIVEKEAD 90

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +EEG LAKIL
Sbjct: 14  LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 67

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
           Q++ +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AKILV 
Sbjct: 8   QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 104 ENTTDVKVGTLIAVMVEEGED 124
           E T DV +G +I + V + ED
Sbjct: 68  EGTRDVPIGAIICITVGKPED 88

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           Q + +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AKIL
Sbjct: 8   QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKIL 65

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 60/82 (73%)
Query: 43  QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 102
             ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAKILV
Sbjct: 5   HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILV 64
Query: 103 PENTTDVKVGTLIAVMVEEGED 124
           PE T DV +GT + ++VE+  D
Sbjct: 65  PEGTRDVPLGTPLCIIVEKEAD 86

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/54 (57%), Positives = 41/54 (75%)
Query: 166 MPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TD A + FE +EEG LAKIL
Sbjct: 10  LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE
Sbjct: 4   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 105 NTTDVKVGTLI 115
            T      TLI
Sbjct: 64  GTVATVGQTLI 74

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +IL
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE
Sbjct: 3   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62
Query: 105 NTTDVKVGTLI 115
            T      TLI
Sbjct: 63  GTVATVGQTLI 73

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +IL
Sbjct: 4   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +I +P L  ++ + T+  W KK GDAV   +VL EI+TDK V+      +GIL  +L  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 105 NTT 107
            TT
Sbjct: 64  GTT 66

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I +P L  ++ + T+  W KK GDAVV  +VL EI+TDK V+      +GIL  +L
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +IK P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 105 NTTDVKVGTLIAVMVEEG 122
             T V  G L+  + E G
Sbjct: 63  GDT-VLSGELLGKLTEGG 79

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I  P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 101
           + K+  +   + E T+ +W  KEGD V+  D +CE+Q+DKA ++  +  +G++ K+ 
Sbjct: 6   QFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +  +   + E T+ +W  KEGD V   D +CE+Q+DKA ++  +  +G++ K+ 
Sbjct: 7   FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   +TEG IV+W  KEGD V     L E+ TDK  +   +   G + KIL  E
Sbjct: 3   EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 105 NTTDVKVGT 113
               V VG+
Sbjct: 63  GQV-VPVGS 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	3e-48
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	2e-31
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	8e-48
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	1e-32
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	1e-47
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	4e-32
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	2e-46
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	1e-27
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	7e-41
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	1e-27
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	7e-26
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	9e-13
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	1e-19
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	2e-12
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	8e-19
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	3e-12
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	1e-18
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	7e-12
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	1e-17
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	5e-12
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	3e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	7e-06
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	6e-08
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	6e-05
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	1e-04
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	3e-04
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	4e-04
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	9e-04

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  152 bits (387), Expect = 3e-48
 Identities = 46/101 (45%), Positives = 64/101 (63%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
           Q++ +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AKILV 
Sbjct: 8   QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67

Query: 104 ENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSA 144
           E T DV +G +I + V + ED +         SA +  SS 
Sbjct: 68  EGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSSG 108

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  110 bits (276), Expect = 2e-31
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
            GQ + +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AKIL
Sbjct: 6   SGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKIL 65

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  152 bits (386), Expect = 8e-48
 Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 5/116 (4%)

Query: 34  LHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEE 93
               +      ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +E
Sbjct: 18  YFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 77

Query: 94  EGILAKILVPENTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPP 149
           EG LAKILVPE T DV +GT + ++VE+  D     +SA +       +   P  P
Sbjct: 78  EGYLAKILVPEGTRDVPLGTPLCIIVEKEAD-----ISAFADYRPTEVTDLKPQVP 128

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  113 bits (285), Expect = 1e-32
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 1/85 (1%)

Query: 136 SATASASSASPPPPPPAPSSGGSVP-GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDV 194
             +                 G S P    + +P+LSPTMT GT+ +W KK G+ +  GD+
Sbjct: 1   GGSHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 60

Query: 195 LCEIQTDKAVMSFETEEEGILAKIL 219
           L EI+TDKA + FE +EEG LAKIL
Sbjct: 61  LAEIETDKATIGFEVQEEGYLAKIL 85

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  151 bits (383), Expect = 1e-47
 Identities = 53/90 (58%), Positives = 75/90 (83%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
            +I MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V 
Sbjct: 8   IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVE 67

Query: 104 ENTTDVKVGTLIAVMVEEGEDWQNVSVSAT 133
           E + ++++G+LI ++VEEGEDW++VS  ++
Sbjct: 68  EGSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  111 bits (280), Expect = 4e-32
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
            G  I MPSLSPTM EG IVKWLKKEG+AV  GD LCEI+TDKAV++ +  ++GILAKI+
Sbjct: 6   SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV 65

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score =  133 bits (337), Expect = 7e-41
 Identities = 42/85 (49%), Positives = 60/85 (70%)

Query: 40  LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK 99
                ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK 61

Query: 100 ILVPENTTDVKVGTLIAVMVEEGED 124
           ILVPE T DV +GT + ++VE+  D
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEAD 86

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 99.8 bits (249), Expect = 1e-27
 Identities = 32/60 (53%), Positives = 43/60 (71%)

Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           P   + +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TD A + FE +EEG LAKIL
Sbjct: 4   PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL 63

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  102 bits (257), Expect = 7e-26
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE
Sbjct: 4   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63

Query: 105 NTTDVKVGTLIAVMVEEGEDWQNVSVSATSPSATASASSASPPPPPPAPSSGGSVPGQII 164
            T    VG  +  +   G +           +     +            +  +   +  
Sbjct: 64  GTV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAE 122

Query: 165 NMPSLSP 171
             P+   
Sbjct: 123 AGPNRRV 129

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 65.3 bits (160), Expect = 9e-13
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +IL
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 60

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 78.8 bits (195), Expect = 1e-19
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +IK P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62

Query: 105 NTTDVKVGTLIAVMVEEG 122
             T V  G L+  + E G
Sbjct: 63  GDT-VLSGELLGKLTEGG 79

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 59.6 bits (145), Expect = 2e-12
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I  P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 76.5 bits (189), Expect = 8e-19
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +I +P L  ++ + T+  W KK GDAV   +VL EI+TDK V+      +GIL  +L  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63

Query: 105 NTTDVKVGTLIAVMVEEG 122
            TT V    ++   + EG
Sbjct: 64  GTT-VTSRQILGR-LREG 79

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 59.2 bits (144), Expect = 3e-12
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I +P L  ++ + T+  W KK GDAVV  +VL EI+TDK V+      +GIL  +L
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 76.2 bits (188), Expect = 1e-18
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
            + K+  +   + E T+ +W  KEGD V+  D +CE+Q+DKA ++  +  +G++ K+   
Sbjct: 5   VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYN 64

Query: 104 ENTTDVKVGTLIAVMVEEGED 124
            +     VG  +  +  E   
Sbjct: 65  LDDI-AYVGKPLVDIETEALK 84

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 58.5 bits (142), Expect = 7e-12
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +  +   + E T+ +W  KEGD V   D +CE+Q+DKA ++  +  +G++ K+ 
Sbjct: 7   FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 73.8 bits (182), Expect = 1e-17
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   +TEG IV+W  KEGD V     L E+ TDK  +   +   G + KIL  E
Sbjct: 3   EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62

Query: 105 NTTDVKVGTLIAVM 118
               V VG+ +  +
Sbjct: 63  GQV-VPVGSTLLQI 75

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 58.8 bits (143), Expect = 5e-12
 Identities = 21/56 (37%), Positives = 29/56 (51%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +P +   +TEG IV+W  KEGD V     L E+ TDK  +   +   G + KIL
Sbjct: 4   FKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKIL 59

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           G + ++  ++G  V  G    E++  K +M+   +E G +  I  P     ++ G ++A 
Sbjct: 14  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAV--LEAGCVVAR 71

Query: 118 M 118
           +
Sbjct: 72  L 72

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 41.9 bits (99), Expect = 7e-06
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI 218
           G + ++  ++G  V  G    E++  K +M+   +E G +  I
Sbjct: 14  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYI 56

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 48.2 bits (115), Expect = 6e-08
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           G + ++  ++G  V  G    E++  K +M+   +E G + K +       ++ G ++A 
Sbjct: 26  GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVAR 83

Query: 118 M 118
           +
Sbjct: 84  L 84

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 165 NMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGIL 215
           N P++  + + G + ++  ++G  V  G    E++  K +M+   +E G +
Sbjct: 15  NDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 40/246 (16%), Positives = 66/246 (26%), Gaps = 98/246 (39%)

Query: 5   VRSRLTKLASKFINPTYNN---------------AFLNKSKIICLHTTNILDAQQEIKMP 49
           +++ L +L     +  Y N               AF    KI  L TT     Q      
Sbjct: 230 IQAELRRL---LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTR--FKQ------ 276

Query: 50  SLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEE-EGILAKIL------V 102
                     +        D ++       I  D   M+   +E + +L K L      +
Sbjct: 277 ----------VT-------DFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 103 PENTTDVK--VGTLIAVMVEEGED-WQNVSVSATSPSATASASSASPPPPPPAPSSGGSV 159
           P           ++IA  + +G   W N          T   SS                
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS---------------- 362

Query: 160 PGQIINMPSLSPTMTEGTIVKWLKK--------EGDAVVPGDVLCEIQTDKAVMSFETEE 211
               +N   L P   E       +K           A +P  +L  I  D      +++ 
Sbjct: 363 ----LN--VLEP--AE------YRKMFDRLSVFPPSAHIPTILLSLIWFDVI----KSDV 404

Query: 212 EGILAK 217
             ++ K
Sbjct: 405 MVVVNK 410

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 58   GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
            G   K +   GD V  GD +  I+  K  M     + G + KIL       V+ G L+AV
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAV 1234

Query: 118  MV 119
            +V
Sbjct: 1235 IV 1236

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
           +E+ +P +        + + + K GD VA    L  ++ DKA M       G++ ++ V 
Sbjct: 3   KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 56

Query: 104 ENTTDVKVGTLIAVMVEEGE 123
                VK G+LI +   EG 
Sbjct: 57  VGDK-VKTGSLIMIFEVEGA 75

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 10/66 (15%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 58   GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
            G++ +     G+ V     L   +  K   + +   +G++ ++ V    T +  G L+  
Sbjct: 1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIE 1144

Query: 118  MVEEGE 123
            + +  +
Sbjct: 1145 IEKATD 1150

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           G ++      G  VA G  LC +   K      +  EG + K+ V ++ T ++   LI  
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILE 716

Query: 118 M 118
           +
Sbjct: 717 I 717

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Length = 72

 Score = 36.0 bits (84), Expect = 9e-04
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           G + K   K GD +  G  +  +++ K  +    +  GI+ ++   E    V  G ++  
Sbjct: 8   GNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLE 66

Query: 118 MVEEGE 123
           +    +
Sbjct: 67  LSNSTQ 72

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.86
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.85
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.83
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.83
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.8
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.77
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.75
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.74
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.73
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.73
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.71
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.69
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.67
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.58
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.5
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.48
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.45
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.44
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.44
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.42
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.42
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.41
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.4
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.39
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.37
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.35
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.35
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.33
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.26
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.25
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.25
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.23
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.21
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.2
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.18
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.17
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.15
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.14
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.14
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	99.02
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	98.94
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.93
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.9
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.9
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.88
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	98.84
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	98.8
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	98.76
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	98.74
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.71
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	98.7
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	98.67
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.66
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.64
1hpc_A	131	H protein of the glycine cleavage system; transit	98.61
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.58
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.58
1hpc_A	131	H protein of the glycine cleavage system; transit	98.58
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.56
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.55
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.55
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.5
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.42
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.23
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.21
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.21
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.21
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.19
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.15
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.14
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.09
3mxu_A	143	Glycine cleavage system H protein; seattle structu	98.04
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.99
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.97
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.94
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	97.93
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.92
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.73
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.71
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.6
2xha_A	193	NUSG, transcription antitermination protein NUSG;	97.08
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.02
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	96.99
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	96.83
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	96.74
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	96.31
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	96.21
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	96.05
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	95.77
2qj8_A	332	MLR6093 protein; structural genomics, joint center	95.65
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	95.34
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	95.09
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	94.96
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	94.75
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	94.73
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	94.22
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	94.18
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	93.97
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	91.91
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	91.57
2xha_A	193	NUSG, transcription antitermination protein NUSG;	91.57
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	91.47
3our_B	183	EIIA, phosphotransferase system IIA component; exh	90.89
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	89.89
2qj8_A	332	MLR6093 protein; structural genomics, joint center	89.43
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	85.1
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	83.6
3our_B	183	EIIA, phosphotransferase system IIA component; exh	81.0

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.86  E-value=2.2e-21  Score=148.44  Aligned_cols=96  Identities=44%  Similarity=0.689  Sum_probs=82.2

Q ss_pred             ceeeeeeccCCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-ee
Q psy10439         30 KIICLHTTNILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TD  108 (219)
Q Consensus        30 ~~~~~~~~~~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~  108 (219)
                      ..|.|......+|.++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+ . 
T Consensus        14 ~~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-   92 (128)
T 1y8o_B           14 LENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-   92 (128)
T ss_dssp             ---------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-
T ss_pred             hccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-
Confidence            34666777778999999999999999999999999999999999999999999999999999999999999999998 8 


Q ss_pred             eecCcEEEEEeecCcccc
Q psy10439        109 VKVGTLIAVMVEEGEDWQ  126 (219)
Q Consensus       109 V~~G~~l~~i~~~~~~~~  126 (219)
                      |..|++|+.|.+.+++..
T Consensus        93 V~~G~~L~~i~~~~~~~~  110 (128)
T 1y8o_B           93 VPLGTPLCIIVEKEADIS  110 (128)
T ss_dssp             EETTCEEEEEESSGGGGG
T ss_pred             ecCCCEEEEEecCccchh
Confidence            999999999987654433

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.85  E-value=1.8e-21  Score=144.91  Aligned_cols=88  Identities=47%  Similarity=0.748  Sum_probs=81.9

Q ss_pred             CCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-eeeecCcEEEE
Q psy10439         39 ILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TDVKVGTLIAV  117 (219)
Q Consensus        39 ~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~V~~G~~l~~  117 (219)
                      ..+|.++|+||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ . |..|++|+.
T Consensus         3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~   81 (108)
T 2dne_A            3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI   81 (108)
T ss_dssp             CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred             CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence            47788999999999999999999999999999999999999999999999999999999999999998 8 999999999


Q ss_pred             EeecCccccc
Q psy10439        118 MVEEGEDWQN  127 (219)
Q Consensus       118 i~~~~~~~~~  127 (219)
                      |...+++...
T Consensus        82 i~~~~~~~~~   91 (108)
T 2dne_A           82 TVGKPEDIEA   91 (108)
T ss_dssp             EESCHHHHHH
T ss_pred             EecCccchhh
Confidence            9876554433

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=2.7e-20  Score=136.24  Aligned_cols=84  Identities=58%  Similarity=0.956  Sum_probs=79.0

Q ss_pred             CCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeee-ecCcEEEE
Q psy10439         39 ILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDV-KVGTLIAV  117 (219)
Q Consensus        39 ~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V-~~G~~l~~  117 (219)
                      +..|.++|+||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+. | ..|++|+.
T Consensus         3 ~~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~   81 (98)
T 2dnc_A            3 SGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGL   81 (98)
T ss_dssp             CCCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEE
T ss_pred             CCcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEE
Confidence            445788999999999999999999999999999999999999999999999999999999999999999 9 99999999


Q ss_pred             EeecCc
Q psy10439        118 MVEEGE  123 (219)
Q Consensus       118 i~~~~~  123 (219)
                      |...++
T Consensus        82 i~~~~~   87 (98)
T 2dnc_A           82 IVEEGE   87 (98)
T ss_dssp             EECTTS
T ss_pred             EecCCC
Confidence            976543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.83  E-value=5e-20  Score=131.78  Aligned_cols=82  Identities=49%  Similarity=0.823  Sum_probs=77.6

Q ss_pred             CcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC-eeeecCcEEEEE
Q psy10439         40 LDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT-TDVKVGTLIAVM  118 (219)
Q Consensus        40 ~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd-~~V~~G~~l~~i  118 (219)
                      .++.++|+||++|+++.+|+|.+|+|++||.|++||.|++||+||+.++|+||.+|+|.+++++.|+ . |..|++|+.+
T Consensus         2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i   80 (87)
T 3crk_C            2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCII   80 (87)
T ss_dssp             CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEE
T ss_pred             CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEE
Confidence            3567899999999999999999999999999999999999999999999999999999999999999 8 9999999999


Q ss_pred             eecC
Q psy10439        119 VEEG  122 (219)
Q Consensus       119 ~~~~  122 (219)
                      .+.+
T Consensus        81 ~~~~   84 (87)
T 3crk_C           81 VEKE   84 (87)
T ss_dssp             ESSS
T ss_pred             Eccc
Confidence            7543

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.80  E-value=2.7e-19  Score=129.63  Aligned_cols=79  Identities=27%  Similarity=0.486  Sum_probs=75.5

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      +.+.|+||++|.++.+|+|.+|+|++||.|++||+|++||++|+..+|+||.+|+|.+++++.|+. |..|++|+.+...
T Consensus         3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~   81 (93)
T 1k8m_A            3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE   81 (93)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred             cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            357899999999999999999999999999999999999999999999999999999999999999 9999999999643

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.77  E-value=1.2e-18  Score=122.19  Aligned_cols=76  Identities=36%  Similarity=0.671  Sum_probs=73.4

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      ++++||++|.++.+|+|.+|+|++||.|++||+|+++|++|+..+|+||++|+|.+++++.|+. |..|++|+.+..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            5799999999999999999999999999999999999999999999999999999999999999 999999999853

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.75  E-value=7e-20  Score=165.87  Aligned_cols=82  Identities=40%  Similarity=0.689  Sum_probs=0.0

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++|+||+||++|++|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|+..
T Consensus         1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~   79 (428)
T 3dva_I            1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   79 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence            567899999999999999999999999999999999999999999999999999999999999999 9999999999865


Q ss_pred             Ccc
Q psy10439        122 GED  124 (219)
Q Consensus       122 ~~~  124 (219)
                      +++
T Consensus        80 ~~~   82 (428)
T 3dva_I           80 GYE   82 (428)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            544

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.74  E-value=4.8e-18  Score=119.21  Aligned_cols=77  Identities=27%  Similarity=0.413  Sum_probs=73.2

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.+.|+||++|.+  +|+|.+|++++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+. |..|++|+.|...
T Consensus         1 m~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~   77 (80)
T 1qjo_A            1 MVKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             CCeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence            4578999999997  899999999999999999999999999999999999999999999999999 9999999999753

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.73  E-value=1.3e-19  Score=127.50  Aligned_cols=77  Identities=35%  Similarity=0.600  Sum_probs=73.7

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      |.++++||++|+++.+|+|.+|+|++||.|++||.|++||++|+..+|+||++|+|.++++++|+. |..|++|+.+.
T Consensus         1 m~~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~   77 (80)
T 1pmr_A            1 SSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLR   77 (80)
T ss_dssp             CCCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCC
T ss_pred             CCcEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            346799999999999999999999999999999999999999999999999999999999999999 99999999875

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.73  E-value=7.5e-18  Score=117.42  Aligned_cols=75  Identities=36%  Similarity=0.556  Sum_probs=72.7

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ++++||++|++...|+|.+|++++||.|++||.|+.+|++|+...|+||.+|+|.+++++.|+. |..|++|+.+.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence            5799999999999999999999999999999999999999999999999999999999999999 99999999875

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.69  E-value=9.4e-17  Score=112.42  Aligned_cols=74  Identities=20%  Similarity=0.353  Sum_probs=70.3

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ++++||++|.+  + +|.+|+|++||.|++||+|+.||++|+..+|+||.+|+|.+++++.|+. |..|++|+.+...
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~   75 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            57899999996  7 9999999999999999999999999999999999999999999999999 9999999998653

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.67  E-value=3e-17  Score=115.46  Aligned_cols=76  Identities=28%  Similarity=0.409  Sum_probs=72.1

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .++++||++| +...|+|.+|++++||.|++||.|+.+|++|+..+|+||.+|+|.+++++.|+. +..|++|+.+..
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA   77 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence            4578999999 678999999999999999999999999999999999999999999999999999 999999999854

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.58  E-value=1.6e-16  Score=112.96  Aligned_cols=73  Identities=27%  Similarity=0.425  Sum_probs=68.3

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++|++|++      |+|.+|++++||.|++||+|+.||++|+...|+||.+|+|.+++++.|+. |..|++|+.|...
T Consensus         1 m~~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~   73 (85)
T 2k7v_A            1 MVKEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   73 (85)
T ss_dssp             CCSCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECC
T ss_pred             CCcEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcC
Confidence            3457889988      89999999999999999999999999999999999999999999999999 9999999999754

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.50  E-value=5.8e-15  Score=106.85  Aligned_cols=84  Identities=24%  Similarity=0.381  Sum_probs=28.9

Q ss_pred             eeeccCCcceeEEecCCCCCCC----ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeee
Q psy10439         34 LHTTNILDAQQEIKMPSLSPTM----TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDV  109 (219)
Q Consensus        34 ~~~~~~~~~~~~i~~P~~~~~~----~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V  109 (219)
                      -|++....+...|.+|+.....    ..|+|.+|++++||.|++||+|++||++|+..+|+||.+|+|.+++++.|+. |
T Consensus         6 ~~~~~~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V   84 (94)
T 2jku_A            6 HHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-V   84 (94)
T ss_dssp             ------------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC---------------------------
T ss_pred             cccccccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-E
Confidence            4566677788899999998763    5899999999999999999999999999999999999999999999999999 9


Q ss_pred             ecCcEEEEE
Q psy10439        110 KVGTLIAVM  118 (219)
Q Consensus       110 ~~G~~l~~i  118 (219)
                      ..|++|+.|
T Consensus        85 ~~G~~L~~i   93 (94)
T 2jku_A           85 GEGDLLVEL   93 (94)
T ss_dssp             ---------
T ss_pred             CCCCEEEEE
Confidence            999999876

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.48  E-value=1e-13  Score=94.75  Aligned_cols=64  Identities=19%  Similarity=0.324  Sum_probs=61.2

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      ..|+|.+|++++||.|++||+|+.|+++|+...|+||.+|+|.+++++.|+. |..|++|+.+.+
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~   69 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN   69 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence            3599999999999999999999999999999999999999999999999999 999999999854

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.45  E-value=6.2e-14  Score=99.31  Aligned_cols=65  Identities=18%  Similarity=0.406  Sum_probs=61.4

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ..|+|.+|++++||.|++||.|+.||++|+..+|+||.+|+|.+++ +.|+. |..|++|+.|.+..
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELDD   76 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECSC
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCCC
Confidence            4599999999999999999999999999999999999999999999 99999 99999999997544

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.3e-13  Score=99.22  Aligned_cols=59  Identities=68%  Similarity=1.098  Sum_probs=56.3

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+.+|.++.++.+|+|.+|++++||.|++||+||++|+||+.++|.||++|+|.+++
T Consensus         7 ~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~   65 (98)
T 2dnc_A            7 GIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIV   65 (98)
T ss_dssp             CEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECS
T ss_pred             cEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999874

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.44  E-value=2.6e-13  Score=96.59  Aligned_cols=59  Identities=53%  Similarity=0.839  Sum_probs=56.1

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+.+|.++.++.+|.|.+|++++||.|++||+|+++|+||+.++|.||++|+|.+++
T Consensus         5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~   63 (87)
T 3crk_C            5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKIL   63 (87)
T ss_dssp             EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEES
T ss_pred             ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEE
Confidence            46789999999999999999999999999999999999999999999999999999864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=4.3e-13  Score=97.96  Aligned_cols=64  Identities=17%  Similarity=0.415  Sum_probs=60.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ..|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|. ++++.|+. |..|++|+.+...
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~~   87 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLELD   87 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECCS
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEcC
Confidence            4599999999999999999999999999999999999999999 99999999 9999999998643

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.42  E-value=4e-13  Score=99.66  Aligned_cols=59  Identities=56%  Similarity=0.909  Sum_probs=56.4

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+.+|.++.++.+|+|.+|++++||.|++||+||++|+||+.++|.||++|+|.+++
T Consensus         7 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~   65 (108)
T 2dne_A            7 GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKIL   65 (108)
T ss_dssp             CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECS
T ss_pred             ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999874

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.41  E-value=4.4e-13  Score=102.25  Aligned_cols=59  Identities=54%  Similarity=0.861  Sum_probs=56.5

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+.+|.++.++.+|+|.+|++++||.|++||+||+||+||+.++|.||++|+|.+|+
T Consensus        27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~   85 (128)
T 1y8o_B           27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL   85 (128)
T ss_dssp             EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEES
T ss_pred             ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999874

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.40  E-value=1.2e-12  Score=89.59  Aligned_cols=62  Identities=24%  Similarity=0.408  Sum_probs=59.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|++++||.|++||+|+.++++|....++||.+|+|.+++++.|+. |..|++|+.+
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i   73 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL   73 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence            3599999999999999999999999999999999999999999999999999 9999999887

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.39  E-value=5.2e-13  Score=96.38  Aligned_cols=58  Identities=29%  Similarity=0.586  Sum_probs=55.4

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.+|.++.++.+|+|.+|++++||.|++||+|+.+|+||+.++|.||++|+|.+++
T Consensus         5 ~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~   62 (93)
T 1k8m_A            5 VQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY   62 (93)
T ss_dssp             EEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEEC
T ss_pred             eEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEE
Confidence            5688999999999999999999999999999999999999999999999999999864

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.37  E-value=1.6e-12  Score=89.98  Aligned_cols=62  Identities=29%  Similarity=0.425  Sum_probs=59.7

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|++++||.|++||+|+.|+++|+...|+||.+|+|.+++++.|+. |..|++|+.|
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i   76 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEE
Confidence            4599999999999999999999999999999999999999999999999999 9999999987

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.35  E-value=1.3e-12  Score=91.23  Aligned_cols=60  Identities=27%  Similarity=0.464  Sum_probs=57.2

Q ss_pred             EEEEE-------EEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         58 GTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        58 g~i~~-------w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      |+|.+       |++++||.|++||.|+.||++|+..+|+||.+|+|.++++++|+. |..|++|+.|
T Consensus        13 G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i   79 (80)
T 1bdo_A           13 GTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI   79 (80)
T ss_dssp             EEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred             eEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEE
Confidence            77776       599999999999999999999999999999999999999999999 9999999987

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.35  E-value=2e-12  Score=94.23  Aligned_cols=66  Identities=27%  Similarity=0.352  Sum_probs=62.4

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ..|+|.+|++++||.|++||+|+.|+++|+...|+||.+|+|.+++++.|+. |..|++|+.|.+..
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEE   86 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCC
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCC
Confidence            4599999999999999999999999999999999999999999999999999 99999999996543

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.33  E-value=2e-12  Score=90.11  Aligned_cols=58  Identities=34%  Similarity=0.691  Sum_probs=54.8

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.+|.++.+..+|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.+++
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~   59 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV   59 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEES
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEE
Confidence            3578999999999999999999999999999999999999999999999999999863

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.26  E-value=6.4e-13  Score=93.02  Aligned_cols=57  Identities=42%  Similarity=0.712  Sum_probs=54.1

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.++.++.+|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.+++
T Consensus         4 ~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~   60 (80)
T 1pmr_A            4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL   60 (80)
T ss_dssp             CEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCT
T ss_pred             EEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEE
Confidence            578999999999999999999999999999999999999999999999999998753

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.25  E-value=1.1e-11  Score=118.03  Aligned_cols=63  Identities=29%  Similarity=0.407  Sum_probs=60.6

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus       619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~  681 (681)
T 3n6r_A          619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEFE  681 (681)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred             CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEEC
Confidence            4599999999999999999999999999999999999999999999999999 99999999873

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.23  E-value=1.1e-11  Score=85.86  Aligned_cols=57  Identities=37%  Similarity=0.593  Sum_probs=54.1

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.++.+...|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus         3 ~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~   59 (77)
T 2l5t_A            3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKIL   59 (77)
T ss_dssp             EEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEEC
T ss_pred             EEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEE
Confidence            578999999999999999999999999999999999999999999999999998763

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.21  E-value=1.2e-12  Score=118.34  Aligned_cols=58  Identities=41%  Similarity=0.720  Sum_probs=0.0

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.||++|+++++|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.+|+
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~   60 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL   60 (428)
T ss_dssp             ----------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEE
Confidence            3689999999999999999999999999999999999999999999999999999874

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.20  E-value=3.3e-11  Score=83.98  Aligned_cols=56  Identities=23%  Similarity=0.383  Sum_probs=52.4

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.+|.++.+  +|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~   58 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK   58 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEe
Confidence            35789999987  899999999999999999999999999999999999999999863

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.18  E-value=3.6e-11  Score=120.14  Aligned_cols=64  Identities=16%  Similarity=0.284  Sum_probs=61.2

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      ..|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|+.
T Consensus      1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEK 1147 (1150)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC-
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEec
Confidence            3599999999999999999999999999999999999999999999999999 999999999964

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.17  E-value=3.5e-11  Score=120.80  Aligned_cols=61  Identities=31%  Similarity=0.395  Sum_probs=59.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      .|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEe
Confidence            399999999999999999999999999999999999999999999999999 9999999987

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.15  E-value=2.4e-11  Score=84.95  Aligned_cols=56  Identities=23%  Similarity=0.395  Sum_probs=52.2

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..+.+|.++ ....|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.++
T Consensus         3 ~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~   58 (81)
T 1gjx_A            3 VELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEV   58 (81)
T ss_dssp             EECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCC
T ss_pred             EEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEE
Confidence            457899999 57899999999999999999999999999999999999999999875

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.14  E-value=7.5e-11  Score=82.06  Aligned_cols=54  Identities=22%  Similarity=0.421  Sum_probs=50.3

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.++..  + .|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus         3 ~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~   56 (79)
T 1iyu_A            3 IIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVS   56 (79)
T ss_dssp             EEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEES
T ss_pred             EEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEE
Confidence            5789999985  6 9999999999999999999999999999999999999998763

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=99.02  E-value=3.3e-10  Score=84.29  Aligned_cols=69  Identities=26%  Similarity=0.319  Sum_probs=61.8

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCcee-----------------------------eEecCCCeEEEEEEecCCC
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-----------------------------SFETEEEGILAKILVPENT  106 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~-----------------------------~i~ap~~G~v~~i~v~~Gd  106 (219)
                      ..|+|.+|+|++||.|++||+|+.|++.++..                             .|+||.+|+|.++.+..|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            35999999999999999999999999886553                             8999999999999999999


Q ss_pred             eeeecC-cEEEEEeecCccc
Q psy10439        107 TDVKVG-TLIAVMVEEGEDW  125 (219)
Q Consensus       107 ~~V~~G-~~l~~i~~~~~~~  125 (219)
                      . |..| ++|+.|.+...-+
T Consensus        88 ~-v~~g~~~l~~i~~~~~~~  106 (116)
T 2k32_A           88 Y-VSASTTELVRVTNLNPIY  106 (116)
T ss_dssp             E-ECTTTSCCEEEECSCTHH
T ss_pred             E-EcCCCcEEEEEECCCeEE
Confidence            9 9998 9999998765443

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=98.94  E-value=1.1e-09  Score=77.16  Aligned_cols=46  Identities=22%  Similarity=0.450  Sum_probs=43.0

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.+++
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~   57 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK   57 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc
Confidence            3478999999999999999999999999999999999999999864

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.93  E-value=2.5e-10  Score=108.97  Aligned_cols=62  Identities=24%  Similarity=0.352  Sum_probs=59.8

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |..|++|+.|
T Consensus       656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i  717 (718)
T 3bg3_A          656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI  717 (718)
T ss_dssp             SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred             CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence            3699999999999999999999999999999999999999999999999999 9999999875

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.90  E-value=1.9e-09  Score=82.87  Aligned_cols=71  Identities=20%  Similarity=0.217  Sum_probs=59.6

Q ss_pred             EEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEE---EecCCCeeee---cCc-EEE
Q psy10439         45 EIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI---LVPENTTDVK---VGT-LIA  116 (219)
Q Consensus        45 ~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i---~v~~Gd~~V~---~G~-~l~  116 (219)
                      .+.+|.+|      .|..+.+ ++||.|++||.||.||++|+..+|.||.+|+|.++   ++..|+. |.   .|+ .|+
T Consensus        38 ~~a~~~lG------~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~  110 (136)
T 1zko_A           38 NHAQEQLG------DVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLF  110 (136)
T ss_dssp             HHHHHHHC------SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCE
T ss_pred             hhhcccCC------CcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEE
Confidence            44566664      3555555 99999999999999999999999999999999999   6788998 98   787 888


Q ss_pred             EEeecC
Q psy10439        117 VMVEEG  122 (219)
Q Consensus       117 ~i~~~~  122 (219)
                      .|....
T Consensus       111 ~i~~~~  116 (136)
T 1zko_A          111 KMEISD  116 (136)
T ss_dssp             EEEESC
T ss_pred             EEEECC
Confidence            887543

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.90  E-value=8.3e-10  Score=110.58  Aligned_cols=63  Identities=30%  Similarity=0.476  Sum_probs=54.1

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+. |..|++|+.|.
T Consensus      1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp             SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred             CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence            3699999999999999999999999999999999999999999999999999 99999999874

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.88  E-value=1e-10  Score=117.56  Aligned_cols=54  Identities=26%  Similarity=0.286  Sum_probs=47.6

Q ss_pred             CceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       160 ~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ....+..|..      |+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.+|+
T Consensus      1166 ~~~~v~ap~~------G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~ 1219 (1236)
T 3va7_A         1166 DAELLYSEYT------GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKIL 1219 (1236)
T ss_dssp             TCEEEECSSC------EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred             CCcEEeCCCc------EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEE
Confidence            3445666633      77999999999999999999999999999999999999999985

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=98.84  E-value=4.1e-10  Score=79.46  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=46.1

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|.+      |.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus         4 ~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~   54 (85)
T 2k7v_A            4 EVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK   54 (85)
T ss_dssp             CCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEEC
T ss_pred             EEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEE
Confidence            4567766      78999999999999999999999999999999999999998763

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=98.80  E-value=1e-08  Score=69.52  Aligned_cols=44  Identities=20%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      .|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.++
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~   50 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEV   50 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEE
Confidence            58899999999999999999999999999999999999999876

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=98.76  E-value=7.8e-09  Score=71.78  Aligned_cols=43  Identities=28%  Similarity=0.424  Sum_probs=39.3

Q ss_pred             eeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        177 TIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       177 ~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+.+|++++||.|++||+|+.+|++|+..+|.||++|+|.+++
T Consensus        21 ~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~   63 (80)
T 1bdo_A           21 PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAIL   63 (80)
T ss_dssp             TTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred             cCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEE
Confidence            3456799999999999999999999999999999999999863

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=1.2e-08  Score=74.18  Aligned_cols=43  Identities=21%  Similarity=0.483  Sum_probs=41.1

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA  216 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~  216 (219)
                      ..|.|.+|++++||.|++||+|+.+|+||+..+|.||++|+|.
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~   66 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK   66 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE
Confidence            3588999999999999999999999999999999999999997

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.71  E-value=5.5e-08  Score=66.74  Aligned_cols=45  Identities=29%  Similarity=0.443  Sum_probs=42.3

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..|.|.+|++++||.|++||+|+.++++|+..+|.||++|+|.++
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~   59 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKV   59 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEE
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEE
Confidence            347899999999999999999999999999999999999999875

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=98.70  E-value=6.3e-09  Score=74.85  Aligned_cols=45  Identities=29%  Similarity=0.445  Sum_probs=25.6

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..|.|.+|++++||.|++||+|+.+|++|+..+|.||++|+|.++
T Consensus        32 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~   76 (94)
T 2jku_A           32 MPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSV   76 (94)
T ss_dssp             SSCEEEEECCCTTCCCCTTCCCEEEEC------------------
T ss_pred             CCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEE
Confidence            458899999999999999999999999999999999999999875

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=98.67  E-value=4.4e-08  Score=66.53  Aligned_cols=45  Identities=22%  Similarity=0.386  Sum_probs=42.3

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..|.+.+|++++||.|++||+|+.++++|...+|.||.+|+|.++
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~   56 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRI   56 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEE
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEE
Confidence            348899999999999999999999999999999999999999875

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.66  E-value=3.9e-08  Score=93.68  Aligned_cols=44  Identities=36%  Similarity=0.499  Sum_probs=42.4

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.+|+
T Consensus       621 G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~  664 (681)
T 3n6r_A          621 GLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKIN  664 (681)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEEC
T ss_pred             EEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEE
Confidence            78999999999999999999999999999999999999999874

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.64  E-value=4.2e-08  Score=75.26  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=38.4

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|..+.+ ++||.|++||+||+||+||+.++|.||.+|+|.+|
T Consensus        45 G~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~ei   88 (136)
T 1zko_A           45 GDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEV   88 (136)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEE
T ss_pred             CCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEE
Confidence            34555544 99999999999999999999999999999999987

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.61  E-value=6.3e-08  Score=73.85  Aligned_cols=44  Identities=18%  Similarity=0.215  Sum_probs=39.7

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|..+.+ ++|+.|++||+||+||+||+.++|.||.+|+|.+|.
T Consensus        36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn   80 (131)
T 1hpc_A           36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVN   80 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEEC
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEh
Confidence            44666666 999999999999999999999999999999999873

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.58  E-value=7e-08  Score=69.90  Aligned_cols=45  Identities=31%  Similarity=0.437  Sum_probs=42.5

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      ..|.|.+|++++||.|++||+|+.++++|+..+|.||++|+|.++
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~   65 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKV   65 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEE
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEE
Confidence            358899999999999999999999999999999999999999875

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.58  E-value=9.3e-08  Score=72.65  Aligned_cols=44  Identities=16%  Similarity=0.236  Sum_probs=38.8

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|..+.+ ++|+.|++||.||+||++|+.++|.||.+|+|.+|.
T Consensus        36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn   80 (128)
T 1onl_A           36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVN   80 (128)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEEC
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEh
Confidence            44555544 999999999999999999999999999999999873

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.58  E-value=3e-08  Score=75.69  Aligned_cols=71  Identities=13%  Similarity=0.125  Sum_probs=55.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC---eeee---cCc-EE
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT---TDVK---VGT-LI  115 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd---~~V~---~G~-~l  115 (219)
                      +.+.+|.+      |.|+.+.+ ++||.|++||.||.||++|+..+|.||.+|+|.+++.+.++   . |.   -|+ -|
T Consensus        28 td~a~~~l------G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl  100 (131)
T 1hpc_A           28 TDHAQDHL------GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGL-INSSPYEDGWM  100 (131)
T ss_dssp             CHHHHHHH------CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTH-HHHCTTTTTCC
T ss_pred             ehhhcccC------CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhh-hccCCCCCceE
Confidence            44455655      45777777 99999999999999999999999999999999999865544   4 43   233 67


Q ss_pred             EEEeec
Q psy10439        116 AVMVEE  121 (219)
Q Consensus       116 ~~i~~~  121 (219)
                      +.|...
T Consensus       101 ~~i~~~  106 (131)
T 1hpc_A          101 IKIKPT  106 (131)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            777643

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.56  E-value=7.5e-08  Score=73.18  Aligned_cols=71  Identities=17%  Similarity=0.081  Sum_probs=54.3

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC---eeee---cCc-EE
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT---TDVK---VGT-LI  115 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd---~~V~---~G~-~l  115 (219)
                      +.+.+|.+|      .|+.+.+ ++||.|++||.||.||++|+..+|.||.+|+|.+++...++   . |.   -|+ -|
T Consensus        29 td~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~l-vn~dpy~~gWl  101 (128)
T 3a7l_A           29 TEHAQELLG------DMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPEL-VNSEPYAGGWI  101 (128)
T ss_dssp             CHHHHHHHC------SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTH-HHHCTTTTTCC
T ss_pred             ehHHhccCC------ceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHH-hccCCCCCccE
Confidence            445566664      4666655 99999999999999999999999999999999999875443   3 33   343 66


Q ss_pred             EEEeec
Q psy10439        116 AVMVEE  121 (219)
Q Consensus       116 ~~i~~~  121 (219)
                      +.+...
T Consensus       102 ~~i~~~  107 (128)
T 3a7l_A          102 FKIKAS  107 (128)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            666543

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.55  E-value=1.2e-07  Score=72.09  Aligned_cols=44  Identities=20%  Similarity=0.172  Sum_probs=38.9

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|..+.+ ++|+.|++||.||+||++|+.++|.||.+|+|.+|.
T Consensus        37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN   81 (128)
T 3a7l_A           37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVN   81 (128)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred             CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEh
Confidence            44555544 899999999999999999999999999999999873

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.55  E-value=1.4e-07  Score=94.36  Aligned_cols=44  Identities=14%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      |.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus      1086 G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~ 1129 (1150)
T 3hbl_A         1086 GSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVT 1129 (1150)
T ss_dssp             EEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEEC
T ss_pred             EEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEE
Confidence            78999999999999999999999999999999999999999874

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.50  E-value=1.4e-07  Score=71.61  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=54.4

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEec---CCCeee---ecCc-EE
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP---ENTTDV---KVGT-LI  115 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~---~Gd~~V---~~G~-~l  115 (219)
                      +.+.+|.+|      .|..+.+ ++||+|++||.||.||++|+..+|.||.+|+|.+++..   ..+. +   +-|+ -|
T Consensus        28 t~~a~~~lG------~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl  100 (128)
T 1onl_A           28 TDYAQDALG------DVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWI  100 (128)
T ss_dssp             CHHHHHHHC------SEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCC
T ss_pred             ehHHhhcCC------CceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccE
Confidence            444556664      4666655 99999999999999999999999999999999999864   3443 4   3454 67


Q ss_pred             EEEeec
Q psy10439        116 AVMVEE  121 (219)
Q Consensus       116 ~~i~~~  121 (219)
                      +.+...
T Consensus       101 ~~i~~~  106 (128)
T 1onl_A          101 FRLKPR  106 (128)
T ss_dssp             EEEEES
T ss_pred             EEEEEC
Confidence            777643

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.23  E-value=1.9e-06  Score=77.25  Aligned_cols=67  Identities=15%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             ceEEEEEEEe-CCCCeEcCCCeEEEEecc------------------------------------------------Cce
Q psy10439         56 TEGTIVKWLK-KEGDAVAPGDVLCEIQTD------------------------------------------------KAV   86 (219)
Q Consensus        56 ~~g~i~~w~v-~~Gd~V~~gd~l~~iet~------------------------------------------------K~~   86 (219)
                      ..|.|.+++| ++||.|++||+|++|++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            3599999998 999999999999999942                                                124


Q ss_pred             eeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecCc
Q psy10439         87 MSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEGE  123 (219)
Q Consensus        87 ~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~~  123 (219)
                      ..|+||++|+|.++.+..|+. |..|++|+.|.+...
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~~~~  243 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDP  243 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCE-ECTTSCSEEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeCCCe
Confidence            579999999999999999999 999999999976543

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.21  E-value=8.1e-07  Score=84.86  Aligned_cols=45  Identities=22%  Similarity=0.353  Sum_probs=42.5

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~  701 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVH  701 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCC
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEe
Confidence            388999999999999999999999999999999999999998763

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.21  E-value=1.7e-06  Score=75.53  Aligned_cols=66  Identities=20%  Similarity=0.303  Sum_probs=58.4

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCc---------------------------------------------------
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKA---------------------------------------------------   85 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~---------------------------------------------------   85 (219)
                      .|+|.+++|++||.|++||+|+.|++...                                                   
T Consensus        65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~  144 (359)
T 3lnn_A           65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE  144 (359)
T ss_dssp             CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            49999999999999999999999987532                                                   


Q ss_pred             -------------------------eeeEecCCCeEEEEEEecCCCeeeec-CcEEEEEeecCc
Q psy10439         86 -------------------------VMSFETEEEGILAKILVPENTTDVKV-GTLIAVMVEEGE  123 (219)
Q Consensus        86 -------------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~-G~~l~~i~~~~~  123 (219)
                                               ...|+||++|+|..+.+..|+. |.. |++|+.|.+...
T Consensus       145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~~~  207 (359)
T 3lnn_A          145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADLSH  207 (359)
T ss_dssp             HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECCSE
T ss_pred             HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecCCe
Confidence                                     2469999999999999999999 998 999999876543

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.21  E-value=5.4e-07  Score=76.02  Aligned_cols=66  Identities=27%  Similarity=0.322  Sum_probs=57.7

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK----------------------------------------------------   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K----------------------------------------------------   84 (219)
                      .|+|.+++|++||.|++||+|+.|++..                                                    
T Consensus        30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~  109 (277)
T 2f1m_A           30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  109 (277)
T ss_dssp             CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence            4999999999999999999999998731                                                    


Q ss_pred             -------------------ceeeEecCCCeEEEEEEecCCCeeeecC--cEEEEEeecCc
Q psy10439         85 -------------------AVMSFETEEEGILAKILVPENTTDVKVG--TLIAVMVEEGE  123 (219)
Q Consensus        85 -------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G--~~l~~i~~~~~  123 (219)
                                         ....|+||++|+|..+.+..|+. |..|  ++|+.|.+...
T Consensus       110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~~~  168 (277)
T 2f1m_A          110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecCCc
Confidence                               12479999999999999999999 9999  58999876543

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.19  E-value=1.8e-06  Score=74.91  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=56.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK----------------------------------------------------   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K----------------------------------------------------   84 (219)
                      .|+|.+++|++||.|++||+|+.|++..                                                    
T Consensus        39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  118 (341)
T 3fpp_A           39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN  118 (341)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred             CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence            4999999999999999999999998741                                                    


Q ss_pred             ---------------------------------ceeeEecCCCeEEEEEEecCCCeeeecCcE---EEEEeecC
Q psy10439         85 ---------------------------------AVMSFETEEEGILAKILVPENTTDVKVGTL---IAVMVEEG  122 (219)
Q Consensus        85 ---------------------------------~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~---l~~i~~~~  122 (219)
                                                       ....|+||++|+|.++.+..|+. |..|++   |+.|.+..
T Consensus       119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecCC
Confidence                                             01459999999999999999999 999987   88887544

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.15  E-value=4e-06  Score=63.25  Aligned_cols=43  Identities=16%  Similarity=0.210  Sum_probs=38.4

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~Vvev   75 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEI   75 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEE
Confidence            55665544 78999999999999999999999999999999987

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.14  E-value=1.4e-06  Score=87.39  Aligned_cols=45  Identities=33%  Similarity=0.545  Sum_probs=36.5

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .|.|.+|+|++||.|++||+|+++|+||+.++|.||.+|+|.+|+
T Consensus      1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~ 1147 (1165)
T 2qf7_A         1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVL 1147 (1165)
T ss_dssp             CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEEC
T ss_pred             CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEE
Confidence            378999999999999999999999999999999999999998864

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.09  E-value=4.8e-06  Score=62.80  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=43.4

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT  106 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd  106 (219)
                      |.|+.+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++....+
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~   81 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE   81 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence            67777766 78999999999999999999999999999999999865544

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=98.04  E-value=8.9e-06  Score=62.57  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=37.8

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+|
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~Vvev   97 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEI   97 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence            44555433 78999999999999999999999999999999987

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.99  E-value=8.8e-06  Score=62.24  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=37.9

Q ss_pred             ceeeeEee-cCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLK-KEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.++
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vvev   92 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEV   92 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEE
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEe
Confidence            45555433 79999999999999999999999999999999987

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.97  E-value=1.1e-05  Score=62.06  Aligned_cols=49  Identities=18%  Similarity=0.220  Sum_probs=42.7

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCC
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT  106 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd  106 (219)
                      |.|+-+.. ++|+.|++||.++.||++|+..+|.||.+|+|.+++-...+
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d  103 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE  103 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence            66666655 78999999999999999999999999999999999865543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.94  E-value=3.3e-06  Score=74.41  Aligned_cols=65  Identities=26%  Similarity=0.344  Sum_probs=56.7

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC----------------------------------------------------
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK----------------------------------------------------   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K----------------------------------------------------   84 (219)
                      .|+|.+++|++||.|++||+|+.|+...                                                    
T Consensus        51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~  130 (369)
T 1vf7_A           51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  130 (369)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            4999999999999999999999998632                                                    


Q ss_pred             -----ceeeEecCCCeEEEEEEecCCCeeeecC--cEEEEEeecC
Q psy10439         85 -----AVMSFETEEEGILAKILVPENTTDVKVG--TLIAVMVEEG  122 (219)
Q Consensus        85 -----~~~~i~ap~~G~v~~i~v~~Gd~~V~~G--~~l~~i~~~~  122 (219)
                           ....|+||++|+|..+.+..|+. |..|  ++|+.|.+..
T Consensus       131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~~  174 (369)
T 1vf7_A          131 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQLD  174 (369)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECCS
T ss_pred             HHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecCC
Confidence                 12479999999999999999999 9995  8899887543

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=97.93  E-value=8.4e-06  Score=60.11  Aligned_cols=45  Identities=31%  Similarity=0.428  Sum_probs=40.0

Q ss_pred             ccceeeeEeecCCCeecCCCeEEEEeecceee-----------------------------eeeCCCCeEEEEc
Q psy10439        174 TEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVM-----------------------------SFETEEEGILAKI  218 (219)
Q Consensus       174 ~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~-----------------------------~i~a~~~G~v~~i  218 (219)
                      ..|.|.+|++++||.|++||+|+.+++.++..                             .|.||++|+|.++
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~   81 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDA   81 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEE
Confidence            35899999999999999999999999986654                             8999999999764

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.92  E-value=1.1e-05  Score=61.73  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=41.0

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEec
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP  103 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~  103 (219)
                      |.|+.+.. ++|++|++||.++.||++|+..+|.||.+|+|.+++-.
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~   95 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA   95 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence            66766655 78999999999999999999999999999999998743

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.73  E-value=6e-05  Score=58.65  Aligned_cols=43  Identities=23%  Similarity=0.373  Sum_probs=37.3

Q ss_pred             ceeeeEe-ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWL-KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~-v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|.-+. .++|+.|++||.++.||+.|+..+|.||.+|+|.++
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~Vvev  102 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEV  102 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEE
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEE
Confidence            4454432 278999999999999999999999999999999987

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.71  E-value=5.3e-05  Score=58.95  Aligned_cols=45  Identities=22%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEe
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV  102 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v  102 (219)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|.|.+++-
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            56666655 7899999999999999999999999999999988874

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.60  E-value=2.8e-06  Score=74.30  Aligned_cols=64  Identities=27%  Similarity=0.378  Sum_probs=54.8

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCc--------------------------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA--------------------------------------------------   85 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~--------------------------------------------------   85 (219)
                      ..|+|.+++|++||.|++||+|++|++...                                                  
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  118 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN  118 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            359999999999999999999999987420                                                  


Q ss_pred             -----------------------------------eeeEecCCCeEEEEEEecCCCeeeecCcE---EEEEee
Q psy10439         86 -----------------------------------VMSFETEEEGILAKILVPENTTDVKVGTL---IAVMVE  120 (219)
Q Consensus        86 -----------------------------------~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~---l~~i~~  120 (219)
                                                         ...|+||++|+|.++.+..|+. |..|++   |+.+.+
T Consensus       119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~  190 (369)
T 4dk0_A          119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVAD  190 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEcC
Confidence                                               1349999999999999999999 999998   666544

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=97.08  E-value=0.0024  Score=51.26  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=27.7

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEE
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK   99 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~   99 (219)
                      .++|+.|+.|++||.||+-.      .|-+..+|++.+
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d   53 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   53 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence            67899999999999999866      788888888843

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.02  E-value=0.0026  Score=55.73  Aligned_cols=61  Identities=21%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             EEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         59 TIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        59 ~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      -+.+..++.||.|++||+|+.|..    .+...+|.||.+|+|..+.  .... |..|+.|+.|....
T Consensus       276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~~  340 (354)
T 3cdx_A          276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMEDY  340 (354)
T ss_dssp             EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEEC
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeeec
Confidence            377888999999999999999997    4778999999999998665  6667 99999999986543

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=96.99  E-value=0.0026  Score=55.30  Aligned_cols=61  Identities=18%  Similarity=0.311  Sum_probs=50.8

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEecc----CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~----K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      +-+.+.+++.||.|++||+|++|...    ....+|+||.+|+|.....  .-. |..|+.|+.|...
T Consensus       265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~~  329 (331)
T 3na6_A          265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGVV  329 (331)
T ss_dssp             CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEECB
T ss_pred             CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEecc
Confidence            44778899999999999999999973    4578999999999987654  456 8999999998643

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=96.83  E-value=0.0055  Score=53.76  Aligned_cols=31  Identities=23%  Similarity=0.430  Sum_probs=26.8

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEE
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILA   98 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~   98 (219)
                      .++|+.||.|++||.||+-.      .|-+..+|+|.
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~   92 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   92 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEE
Confidence            68999999999999999966      77778888774

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=96.74  E-value=0.004  Score=54.91  Aligned_cols=61  Identities=18%  Similarity=0.304  Sum_probs=51.3

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEec------cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQT------DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet------~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .+-|.+.+++.||.|++||+|++|..      .....+|+||.+|+|.-....  -. |..|+.|+.|..
T Consensus       297 ~~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~--p~-V~~G~~l~~i~~  363 (368)
T 3fmc_A          297 KAGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFAS--AS-VHQGTELYKVMT  363 (368)
T ss_dssp             SCEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSS--SE-ECTTCEEEEEEE
T ss_pred             CCEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCC--Cc-cCCCCEEEEEee
Confidence            35566799999999999999999997      456789999999999777644  56 999999998864

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=96.31  E-value=0.038  Score=44.23  Aligned_cols=44  Identities=25%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      .++|+.||.|++|+.||+.  |..+..|-+..+|+|.=-.+.+|..
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t  106 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT  106 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence            6799999999999999976  6899999999999997776666654

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=96.21  E-value=0.016  Score=49.71  Aligned_cols=55  Identities=18%  Similarity=0.178  Sum_probs=40.5

Q ss_pred             eCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         65 KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        65 v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ++.|+.-..=..-..|+.. ....|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus        11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~-V~kG~~L~~ld~~   65 (341)
T 3fpp_A           11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDK-VKKDQLLGVIDPE   65 (341)
T ss_dssp             --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCE-ECTTCEEEEECCH
T ss_pred             EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCE-ECCCCEEEEEChH
Confidence            3444433333334455554 46789999999999999999999 9999999999754

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=96.05  E-value=0.0022  Score=57.16  Aligned_cols=118  Identities=13%  Similarity=0.133  Sum_probs=68.4

Q ss_pred             eEEEEecc-CceeeEecCCCeEEEEEEe-cCCCeeeecCcEEEEEeecCccccc--ccccc-CCCCc-c-cc-----CCC
Q psy10439         76 VLCEIQTD-KAVMSFETEEEGILAKILV-PENTTDVKVGTLIAVMVEEGEDWQN--VSVSA-TSPSA-T-AS-----ASS  143 (219)
Q Consensus        76 ~l~~iet~-K~~~~i~ap~~G~v~~i~v-~~Gd~~V~~G~~l~~i~~~~~~~~~--~~~~~-~~~a~-~-a~-----a~a  143 (219)
                      ....|+.+ .....|.++.+|+|.++++ ++|+. |+.|++|+.|...+-..+.  ..... -.... . ..     ...
T Consensus       110 ~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~-VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~  188 (413)
T 3ne5_B          110 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDK-VQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLA  188 (413)
T ss_dssp             EEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCE-ECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCceEEEecccCEEEEEEEeCCCCCE-EcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHc
Confidence            34455543 4467899999999999998 99999 9999999999744311000  00000 00000 0 00     000


Q ss_pred             CCCCCCCCC-CCCCCCCCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEee
Q psy10439        144 ASPPPPPPA-PSSGGSVPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQT  200 (219)
Q Consensus       144 ~a~~~a~~~-aa~~~~~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~  200 (219)
                      ......-+. ...........+..|      -.|.|.+..+.+|+.|..|++|+.|-.
T Consensus       189 ~~~~~~~~~l~~~~~~~~~~~I~AP------~~G~V~~~~v~~G~~V~~G~~l~~I~~  240 (413)
T 3ne5_B          189 GMPEADIRRLIATQKIQTRFTLKAP------IDGVITAFDLRAGMNIAKDNVVAKIQG  240 (413)
T ss_dssp             TCCHHHHHHHHHHTSCCCEEEEECS------SSEEEEECCCCTTCEECTTSCSEEEEE
T ss_pred             CCCHHHHHHHHHhccccccEEEEcC------CCeEEEEEEcCCCCEECCCCcEEEEeC
Confidence            000000000 000111224567777      457899999999999999999999953

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=95.77  E-value=0.0076  Score=47.12  Aligned_cols=59  Identities=27%  Similarity=0.322  Sum_probs=50.2

Q ss_pred             ceEEEEEEEeCCCCeEcC----CCeEEEEeccCceeeEecCCCeEEEEE-------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI-------------------------------  100 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~----gd~l~~iet~K~~~~i~ap~~G~v~~i-------------------------------  100 (219)
                      -.|+|..+. +..|.+-.    |+.++..-++   ..++||.+|+|..+                               
T Consensus        19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~   94 (161)
T 1f3z_A           19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE   94 (161)
T ss_dssp             SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence            349998876 77888766    8888888775   57899999999988                               


Q ss_pred             ----EecCCCeeeecCcEEEEEe
Q psy10439        101 ----LVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus       101 ----~v~~Gd~~V~~G~~l~~i~  119 (219)
                          +++.||. |..|++|+.+.
T Consensus        95 gF~~~V~~Gd~-V~~G~~L~~~d  116 (161)
T 1f3z_A           95 GFKRIAEEGQR-VKVGDTVIEFD  116 (161)
T ss_dssp             TEEECSCTTCE-ECTTCEEEEEC
T ss_pred             ccEEEEeCcCE-ECCCCEEEEEC
Confidence                8899999 99999999884

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=95.65  E-value=0.048  Score=47.07  Aligned_cols=60  Identities=17%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEec----cCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet----~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      +.+...+++.|+.|++||+|+++-.    .....+|.||.+|+|.-..  .... |..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence            4466688999999999999999965    4567889999999996665  4456 889999988854

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=95.34  E-value=0.011  Score=45.87  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=49.2

Q ss_pred             eEEEEEEEeCCCCeEcC----CCeEEEEeccCceeeEecCCCeEEEE---------------------------------
Q psy10439         57 EGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAK---------------------------------   99 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~----gd~l~~iet~K~~~~i~ap~~G~v~~---------------------------------   99 (219)
                      .|+|..+. +..|.+-.    |+.++...++   ..++||.+|+|..                                 
T Consensus        15 ~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g   90 (154)
T 2gpr_A           15 DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG   90 (154)
T ss_dssp             SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred             CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence            48998875 77888766    8889888875   5899999999998                                 


Q ss_pred             --EEecCCCeeeecCcEEEEEe
Q psy10439        100 --ILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus       100 --i~v~~Gd~~V~~G~~l~~i~  119 (219)
                        ++++.||. |+.|++|+.+.
T Consensus        91 F~~~V~~Gd~-V~~G~~L~~~d  111 (154)
T 2gpr_A           91 FESFVTQDQE-VNAGDKLVTVD  111 (154)
T ss_dssp             EEECCCTTCE-ECTTCEEEEEC
T ss_pred             eEEEEcCCCE-EcCCCEEEEEC
Confidence              48899999 99999999884

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=95.09  E-value=0.012  Score=46.08  Aligned_cols=59  Identities=19%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             ceEEEEEEEeCCCCeEcC----CCeEEEEeccCceeeEecCCCeEEEEE-------------------------------
Q psy10439         56 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI-------------------------------  100 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~----gd~l~~iet~K~~~~i~ap~~G~v~~i-------------------------------  100 (219)
                      -.|+|+.+ .+..|.+-.    |+.++..-+   ...++||.+|+|..+                               
T Consensus        19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~   94 (162)
T 1ax3_A           19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   94 (162)
T ss_dssp             CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred             CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence            35999987 677888766    888887776   457899999999988                               


Q ss_pred             ----EecCCCeeeecCcEEEEEe
Q psy10439        101 ----LVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus       101 ----~v~~Gd~~V~~G~~l~~i~  119 (219)
                          +++.||. |+.|++|+.+.
T Consensus        95 gF~~~V~~Gd~-V~~G~~L~~~d  116 (162)
T 1ax3_A           95 GFTSFVSEGDR-VEPGQKLLEVD  116 (162)
T ss_dssp             TEEESCCCCSE-ECSEEEEEEEC
T ss_pred             ccEEEEeCCCE-EcCCCEEEEEC
Confidence                8889999 99999999884

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=94.96  E-value=0.023  Score=47.32  Aligned_cols=45  Identities=11%  Similarity=0.170  Sum_probs=37.8

Q ss_pred             CeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         75 DVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        75 d~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ..-..|+.. ....|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus        12 ~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~-V~kGq~L~~ld~~   56 (277)
T 2f1m_A           12 ELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSD-IEAGVSLYQIDPA   56 (277)
T ss_dssp             EEEEEEECS-EEEEECCSSCEEEEEECSCTTCE-ECTTSCSEEECCH
T ss_pred             EEEEEEEee-eEEEEEccccEEEEEEEcCCCCE-ecCCCEEEEECcH
Confidence            344566654 46789999999999999999999 9999999999754

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=94.75  E-value=0.038  Score=47.87  Aligned_cols=41  Identities=17%  Similarity=0.418  Sum_probs=35.7

Q ss_pred             eeeeEeecCCCeecCCCeEEEEeec----ceeeeeeCCCCeEEEE
Q psy10439        177 TIVKWLKKEGDAVVPGDVLCEIQTD----KAVMSFETEEEGILAK  217 (219)
Q Consensus       177 ~i~~~~v~~Gd~V~~g~~l~~ve~~----K~~~~i~a~~~G~v~~  217 (219)
                      -+....++.||.|++||+|+.|...    ....+|.||.+|+|..
T Consensus       266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~  310 (331)
T 3na6_A          266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLIS  310 (331)
T ss_dssp             EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEE
T ss_pred             eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEE
Confidence            3667789999999999999999984    4678999999999865

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=94.73  E-value=0.042  Score=42.84  Aligned_cols=49  Identities=18%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             ceEEEEEEEeCCCCeEcCCCeEEEEeccCcee-eEecCCCeEEEEEEecC
Q psy10439         56 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-SFETEEEGILAKILVPE  104 (219)
Q Consensus        56 ~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~-~i~ap~~G~v~~i~v~~  104 (219)
                      .+|.-+-..+.+|+.|.+||.|+-|.|.|..+ -++||.+|+|.-+.=-.
T Consensus       107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p  156 (169)
T 3d4r_A          107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIP  156 (169)
T ss_dssp             ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEET
T ss_pred             eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecC
Confidence            35667778899999999999999999999965 59999999998776433

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=94.22  E-value=0.057  Score=46.52  Aligned_cols=48  Identities=13%  Similarity=0.147  Sum_probs=40.7

Q ss_pred             CCeEEEEecc-CceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         74 GDVLCEIQTD-KAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        74 gd~l~~iet~-K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      -..-..|+.+ .....|.++.+|+|.++++++|+. |+.|++|+.|...+
T Consensus        44 ~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~-V~kGq~L~~ld~~~   92 (359)
T 3lnn_A           44 FNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDE-VKAGDVLFTIDSAD   92 (359)
T ss_dssp             EEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCE-ECTTCEEEEEECSS
T ss_pred             EEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCE-EcCCCEEEEEChHH
Confidence            3444577765 667899999999999999999999 99999999997643

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=94.18  E-value=0.057  Score=47.49  Aligned_cols=43  Identities=19%  Similarity=0.292  Sum_probs=37.1

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEee------cceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQT------DKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~------~K~~~~i~a~~~G~v~~i  218 (219)
                      +-+....++.||.|++||+|+.|..      .....+|.||.+|+|-..
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~  346 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH  346 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE
Confidence            3467899999999999999999998      457789999999998653

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=93.97  E-value=0.083  Score=46.04  Aligned_cols=42  Identities=19%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             eeeeEeecCCCeecCCCeEEEEee----cceeeeeeCCCCeEEEEc
Q psy10439        177 TIVKWLKKEGDAVVPGDVLCEIQT----DKAVMSFETEEEGILAKI  218 (219)
Q Consensus       177 ~i~~~~v~~Gd~V~~g~~l~~ve~----~K~~~~i~a~~~G~v~~i  218 (219)
                      -+....++.|+.|++||+|+.++.    .+...+|.||.+|+|..+
T Consensus       276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~  321 (354)
T 3cdx_A          276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG  321 (354)
T ss_dssp             EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE
Confidence            367778899999999999999998    478899999999998653

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=91.91  E-value=0.15  Score=40.65  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             eeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEE
Q psy10439        179 VKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILA  216 (219)
Q Consensus       179 ~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~  216 (219)
                      ...+|+.|+.|++||+||+.  |..+..|-+..+|+|.
T Consensus        62 a~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~   97 (190)
T 2auk_A           62 AVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR   97 (190)
T ss_dssp             CEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEE
T ss_pred             CEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEE
Confidence            35789999999999999976  7999999999999986

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=91.57  E-value=0.32  Score=37.87  Aligned_cols=44  Identities=20%  Similarity=0.223  Sum_probs=38.4

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecceeee-eeCCCCeEEEEc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMS-FETEEEGILAKI  218 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~-i~a~~~G~v~~i  218 (219)
                      +|.-.-..+.+|+.|.+||.|+-+.|-|-..- +.||.+|+|.-|
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v  152 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFM  152 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEE
Confidence            56666788999999999999999999997665 999999999764

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=91.57  E-value=0.064  Score=42.95  Aligned_cols=45  Identities=22%  Similarity=0.297  Sum_probs=35.1

Q ss_pred             eCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEE--------------------------E--EecCCCeeeecCcEEE
Q psy10439         65 KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK--------------------------I--LVPENTTDVKVGTLIA  116 (219)
Q Consensus        65 v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~--------------------------i--~v~~Gd~~V~~G~~l~  116 (219)
                      |+.|+.|+.||+|+      -...|-|..+|+|.-                          +  +|++||. |..|+.|+
T Consensus        85 V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~-V~~Ge~L~  157 (193)
T 2xha_A           85 LRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKE-VKQGEMLA  157 (193)
T ss_dssp             CCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCE-ECTTCEEE
T ss_pred             cCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCE-ECCCCCcc
Confidence            78999999999998      345567788887742                          3  6788888 88888775

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=91.47  E-value=0.11  Score=45.29  Aligned_cols=44  Identities=18%  Similarity=0.224  Sum_probs=36.5

Q ss_pred             eEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         76 VLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        76 ~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .-..|+.. -...|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus        34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~-V~kGq~L~~ld~~   77 (369)
T 1vf7_A           34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSD-VKAGQQLYQIDPA   77 (369)
T ss_dssp             EEEECEES-CEEEECCSSCEEEEECCSCSSEE-ECTTSEEEEECCH
T ss_pred             EEEEEEee-eEEEEEeeCceEEEEEEcCCCCE-EcCCCEEEEECcH
Confidence            33455543 45789999999999999999999 9999999999754

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=90.89  E-value=1.1  Score=35.52  Aligned_cols=27  Identities=26%  Similarity=0.393  Sum_probs=23.2

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      |+--+++|++||+|++||+|+.+.-++
T Consensus       115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~  141 (183)
T 3our_B          115 GEGFTRIAEEGQTVKAGDTVIEFDLAL  141 (183)
T ss_dssp             TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred             CccceEEEeCcCEEcCCCEEEEECHHH
Confidence            666789999999999999999996443

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=89.89  E-value=0.085  Score=45.52  Aligned_cols=52  Identities=19%  Similarity=0.217  Sum_probs=39.9

Q ss_pred             CCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         68 GDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        68 Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |+.-..=..-..|+.. ....|.++.+|+|.++++++|+. |+.|++|+.|...
T Consensus        15 ~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~-V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           15 GNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQ-VKKGDLLAEIDST   66 (369)
T ss_dssp             ECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSC-CCSSCCCEECCCH
T ss_pred             cceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCE-ECCCCEEEEEcCH
Confidence            3333333344566643 46689999999999999999999 9999999999754

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=89.43  E-value=0.51  Score=40.50  Aligned_cols=42  Identities=17%  Similarity=0.149  Sum_probs=34.8

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEee----cceeeeeeCCCCeEEEE
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQT----DKAVMSFETEEEGILAK  217 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~----~K~~~~i~a~~~G~v~~  217 (219)
                      +.+....++.|+.|++||+|+.+-.    .....+|.||.+|+|.-
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~  310 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFA  310 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEE
Confidence            3455677889999999999999965    45778899999999864

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=85.10  E-value=3.4  Score=41.95  Aligned_cols=44  Identities=25%  Similarity=0.308  Sum_probs=36.4

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCe
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT  107 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~  107 (219)
                      .++|+.||.|++||.||+.  |--+..|-+..+|+|.=..+.+|-.
T Consensus      1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~g~t 1045 (1407)
T 3lu0_D         1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 1045 (1407)
T ss_dssp             EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCBTTT
T ss_pred             EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeeccCce
Confidence            5789999999999999987  5678899999999997655555554

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=83.60  E-value=0.72  Score=35.50  Aligned_cols=28  Identities=18%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K   84 (219)
                      +|+=-+.+|++||+|++||+|+++.-++
T Consensus        87 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~  114 (154)
T 2gpr_A           87 DGNGFESFVTQDQEVNAGDKLVTVDLKS  114 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHH
T ss_pred             CCCceEEEEcCCCEEcCCCEEEEECHHH
Confidence            4444568999999999999999998654

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=81.00  E-value=0.87  Score=36.05  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=23.8

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K   84 (219)
                      +|+--+++|++||+|++||+|+++.-++
T Consensus       114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~  141 (183)
T 3our_B          114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL  141 (183)
T ss_dssp             TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred             CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence            4566689999999999999999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	2e-27
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	2e-16
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	4e-24
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	1e-16
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	6e-24
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	2e-15
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-23
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	1e-14
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-23
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-15
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-19
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-11
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-18
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-10
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-15
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	1e-10
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	3e-11
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	2e-07

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (245), Expect = 2e-27
 Identities = 43/80 (53%), Positives = 61/80 (76%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           ++ +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE
Sbjct: 7   QVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPE 66

Query: 105 NTTDVKVGTLIAVMVEEGED 124
            T DV +GT + ++VE+  D
Sbjct: 67  GTRDVPLGTPLCIIVEKEAD 86

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 2e-16
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 160 PGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           P   + +P+LSPTMT GT+ +W KK G+ +  GD+L EI+TDKA + FE +EEG LAKIL
Sbjct: 4   PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL 63

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 89.1 bits (221), Expect = 4e-24
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +I +P L  ++ + T+  W KK GDAV   +VL EI+TDK V+      +GIL  +L  E
Sbjct: 4   DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63

Query: 105 NTTDVKVGTLIAVMVE 120
            TT V    ++  + E
Sbjct: 64  GTT-VTSRQILGRLRE 78

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 69.4 bits (170), Expect = 1e-16
 Identities = 24/56 (42%), Positives = 34/56 (60%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I +P L  ++ + T+  W KK GDAVV  +VL EI+TDK V+      +GIL  +L
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (221), Expect = 6e-24
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           + K+  +   + E T+ +W  KEGD V+  D +CE+Q+DKA ++  +  +G++ K+    
Sbjct: 6   QFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNL 65

Query: 105 NTTDVKVGTLIAVMVEEGED 124
           +     VG  +  +  E   
Sbjct: 66  DDI-AYVGKPLVDIETEALK 84

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (163), Expect = 2e-15
 Identities = 17/56 (30%), Positives = 32/56 (57%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +  +   + E T+ +W  KEGD V   D +CE+Q+DKA ++  +  +G++ K+ 
Sbjct: 7   FKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 87.6 bits (217), Expect = 2e-23
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           +IK P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+  E
Sbjct: 3   DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62

Query: 105 NTTDVKVGTLIAVMVEEG 122
             T V  G L+  + E G
Sbjct: 63  GDT-VLSGELLGKLTEGG 79

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           I  P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV 59

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 87.5 bits (217), Expect = 2e-23
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E K+P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE
Sbjct: 3   EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62

Query: 105 NTTDVKVGTLIAVMVEEG 122
            T    VG  +  +   G
Sbjct: 63  GTV-ATVGQTLITLDAPG 79

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 65.9 bits (161), Expect = 3e-15
 Identities = 24/56 (42%), Positives = 33/56 (58%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
             +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +IL
Sbjct: 4   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL 59

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 76.7 bits (189), Expect = 3e-19
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 45  EIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 104
           E+K+P +        I+      GD +A  D L  ++TDKA M    E  G++ ++ V  
Sbjct: 4   ELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKV 62

Query: 105 NTTDVKVGTLIAVMVEEGE 123
               +  G LI V+  EG 
Sbjct: 63  GDK-ISEGGLIVVVEAEGT 80

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           + +P +        I+      GD +   D L  ++TDKA M    E  G++ ++ 
Sbjct: 5   LKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 74.1 bits (182), Expect = 2e-18
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
           +E+ +P +     E  + + + K GD VA    L  ++ DKA M       G++ ++ V 
Sbjct: 3   KEVNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 60

Query: 104 ENTTDVKVGTLIAVMVEEGE 123
                VK G+LI +   EG 
Sbjct: 61  VGDK-VKTGSLIMIFEVEGA 79

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 164 INMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +N+P +     E  + + + K GD V     L  ++ DKA M       G++ ++ 
Sbjct: 5   VNVPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK 58

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 66.8 bits (163), Expect = 1e-15
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 44  QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 103
           + I++P +     +G +++ L K GD +     L  +++ KA M   + + G++  + V 
Sbjct: 2   EIIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVK 58

Query: 104 ENTTDVKVGTLIAVMVEEG 122
                +K G  I  +    
Sbjct: 59  LGDK-LKEGDAIIELEPAA 76

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           +II +P +     +G +++ L K GD +     L  +++ KA M   + + G++  + 
Sbjct: 2   EIIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVS 56

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 55.7 bits (134), Expect = 3e-11
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 58  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAV 117
           GT+ K L KEGD V  G  +  ++  K         +G + K+LV E    V+ G  +  
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIK 75

Query: 118 M 118
           +
Sbjct: 76  I 76

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 176 GTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL 219
           GT+ K L KEGD V  G  +  ++  K         +G + K+L
Sbjct: 17  GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.92
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.89
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.88
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.87
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.86
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.84
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.83
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.83
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.67
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.66
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.64
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.64
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.6
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.57
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.52
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.5
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.47
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.46
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.33
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.21
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.6
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	97.54
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.51
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	97.48
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	97.11
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	94.95
d1e2wa2	64	Cytochrome f, small domain {Chlamydomonas reinhard	92.98
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	92.53
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	92.18
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	91.74
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	90.87
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	90.23
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	89.66
d1ci3m2	62	Cytochrome f, small domain {Phormidium laminosum [	89.03
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	88.91
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	88.73
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	88.52
d1tu2b2	66	Cytochrome f, small domain {Anabaena sp., strain P	88.41
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	88.1
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	86.13
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	85.49
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	85.19
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	84.76
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	84.09
d1o4ua2	103	Quinolinic acid phosphoribosyltransferase (Nicotin	82.8
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	81.27
d1o4ua2	103	Quinolinic acid phosphoribosyltransferase (Nicotin	80.39

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-25  Score=160.46  Aligned_cols=87  Identities=49%  Similarity=0.812  Sum_probs=80.6

Q ss_pred             CCcceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         39 ILDAQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        39 ~~~~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      +++++++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+..|++|++|+.|
T Consensus         1 ~~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i   80 (102)
T d1y8ob1           1 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII   80 (102)
T ss_dssp             CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEE
T ss_pred             CCCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999997339999999999


Q ss_pred             eecCccc
Q psy10439        119 VEEGEDW  125 (219)
Q Consensus       119 ~~~~~~~  125 (219)
                      ...+++.
T Consensus        81 ~~~~~~~   87 (102)
T d1y8ob1          81 VEKEADI   87 (102)
T ss_dssp             ESSGGGG
T ss_pred             ecCCccc
Confidence            7665543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.89  E-value=9.5e-24  Score=146.96  Aligned_cols=77  Identities=35%  Similarity=0.659  Sum_probs=74.6

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ++|+||+||+++++|+|.+|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |.+|++|+.|++.
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~-v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCE-ECCCCEEEEEeCC
Confidence            6799999999999999999999999999999999999999999999999999999999999999 9999999999754

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.7e-23  Score=146.36  Aligned_cols=79  Identities=27%  Similarity=0.489  Sum_probs=75.7

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      .++|+||+||+++++|+|++|++++||.|++||+||+|||||+.++|+||.+|+|.++++++|+. |.+|++|+.|+.+.
T Consensus         4 ~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~-v~~G~~l~~i~~~~   82 (87)
T d1k8ma_           4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETEA   82 (87)
T ss_dssp             CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECSC
T ss_pred             cEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999 99999999997543

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=4.5e-24  Score=148.91  Aligned_cols=77  Identities=42%  Similarity=0.709  Sum_probs=74.0

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      ++|+||+||+++++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |.+|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~-v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSE-ECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            5789999999999999999999999999999999999999999999999999999999999999 9999999988643

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=6.8e-24  Score=147.95  Aligned_cols=77  Identities=36%  Similarity=0.611  Sum_probs=74.4

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEee
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVE  120 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~  120 (219)
                      .++|+||++|+++++|+|.+|+|++||.|++||+||+|||||+.++|+||.+|+|.++++++|+. |.+|++|+.|++
T Consensus         2 ~iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~-v~~G~~l~~i~e   78 (80)
T d1pmra_           2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             CeEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCE-ECCCCEEEEEeC
Confidence            46899999999999999999999999999999999999999999999999999999999999999 999999999863

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2e-21  Score=135.43  Aligned_cols=77  Identities=27%  Similarity=0.413  Sum_probs=73.3

Q ss_pred             ceeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         42 AQQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        42 ~~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      |.++|+||++|.  ++++|++|++++||.|++||+||+||+||+.++++||.+|+|.++++++|+. |.+|++|+.|+.+
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~e   77 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            678999999986  4799999999999999999999999999999999999999999999999999 9999999999743

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.83  E-value=7.3e-22  Score=138.00  Aligned_cols=77  Identities=29%  Similarity=0.419  Sum_probs=73.2

Q ss_pred             eeEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         43 QQEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        43 ~~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .++|+||+|| ++.+++|.+|++++||.|++||+||+||+||++++++||.+|+|.++++++|+. |.+|++|+.++..
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~-v~~G~~l~~ie~~   78 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEAE   78 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECCS
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCE-ECCCCEEEEEecc
Confidence            4679999999 589999999999999999999999999999999999999999999999999999 9999999999643

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.83  E-value=1.3e-20  Score=130.92  Aligned_cols=75  Identities=21%  Similarity=0.395  Sum_probs=70.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeecC
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEEG  122 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~~  122 (219)
                      ..|+||++|.   +|+|.+|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |..|++|+.|+..+
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~~~   76 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCC
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCE-ECCCCEEEEEecCc
Confidence            5789999984   799999999999999999999999999999999999999999999999999 99999999997543

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.3e-17  Score=117.58  Aligned_cols=61  Identities=54%  Similarity=0.865  Sum_probs=58.1

Q ss_pred             CCceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        159 VPGQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       159 ~~~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      +.+..+.||.+|.++++|+|.+|++++||.|++||+||+||+||++++|+||++|+|.+|+
T Consensus         3 p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~   63 (102)
T d1y8ob1           3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKIL   63 (102)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEES
T ss_pred             CCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEE
Confidence            3478899999999999999999999999999999999999999999999999999999874

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.66  E-value=8.9e-17  Score=110.73  Aligned_cols=68  Identities=31%  Similarity=0.447  Sum_probs=63.2

Q ss_pred             eEEecCCCCCCCceEEEEEEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         44 QEIKMPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        44 ~~i~~P~~~~~~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      ..+..|-      .|+|.+|+|++||+|++||+|+.+|+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus         9 ~~v~ap~------~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~-V~~G~~L~~i   76 (77)
T d1dcza_           9 GEIPAPL------AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             SEEEBSS------SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             CEEECCC------CcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCE-ECCCCEEEEe
Confidence            4566662      389999999999999999999999999999999999999999999999999 9999999987

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.64  E-value=1.3e-16  Score=110.40  Aligned_cols=58  Identities=34%  Similarity=0.691  Sum_probs=55.8

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+.+|.+++++++|+|.+|++++||.|++||+||++|+||+.++|+||++|+|.+|+
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~   59 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIV   59 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEES
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEE
Confidence            4689999999999999999999999999999999999999999999999999999875

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.64  E-value=6.8e-17  Score=112.05  Aligned_cols=58  Identities=41%  Similarity=0.720  Sum_probs=55.3

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+++|++|+++++++|.+|++++||.|++||+||++|+||+.++|+||.+|+|.+|+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~   59 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEIL   59 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEE
Confidence            3688999999999999999999999999999999999999999999999999998874

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.2e-16  Score=109.15  Aligned_cols=59  Identities=29%  Similarity=0.557  Sum_probs=56.2

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+.+|++|+++++++|.+|++++||.|++||+||++|+||+.++|+||++|+|.+|+
T Consensus         4 ~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~   62 (87)
T d1k8ma_           4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY   62 (87)
T ss_dssp             CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEEC
T ss_pred             cEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEE
Confidence            35689999999999999999999999999999999999999999999999999999874

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.2e-16  Score=110.71  Aligned_cols=59  Identities=41%  Similarity=0.682  Sum_probs=56.1

Q ss_pred             ceeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ...+.+|.+++++.++.|.+|++++||+|++||+||++|+||++++|+||++|+|.+|+
T Consensus         2 ~iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~   60 (80)
T d1pmra_           2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL   60 (80)
T ss_dssp             CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCT
T ss_pred             CeEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEE
Confidence            35689999999999999999999999999999999999999999999999999998874

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=1e-14  Score=100.81  Aligned_cols=57  Identities=26%  Similarity=0.428  Sum_probs=55.1

Q ss_pred             EEEeCCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEe
Q psy10439         62 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMV  119 (219)
Q Consensus        62 ~w~v~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~  119 (219)
                      .++|++||+|++||+||.||+||+.++|+||.+|+|.+++++.|+. |..|++|+.|+
T Consensus        24 ~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~-V~~G~~L~~ie   80 (80)
T d1bdoa_          24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE   80 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred             CeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCE-ECCCCEEEEEC
Confidence            6889999999999999999999999999999999999999999999 99999999874

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.50  E-value=5e-15  Score=102.78  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=53.7

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+++|++|. +.+++|.+|++++||.|++||+||++|+||+.++++||.+|+|.+|+
T Consensus         3 iei~~P~lg~-~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~   59 (81)
T d1gjxa_           3 VELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK   59 (81)
T ss_dssp             EECCCCCCSS-CSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCC
T ss_pred             EEEECCCCCC-CcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEE
Confidence            4689999994 78999999999999999999999999999999999999999999874

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.9e-14  Score=97.91  Aligned_cols=56  Identities=23%  Similarity=0.383  Sum_probs=52.3

Q ss_pred             eeeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        162 QIINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       162 ~~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      ..+++|++|.  ++++|.+|++++||.|++||+||++|+||+.++|.||.+|+|.+|+
T Consensus         3 ~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~   58 (80)
T d1qjoa_           3 KEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELK   58 (80)
T ss_dssp             EEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECC
T ss_pred             eEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEE
Confidence            4688999986  4799999999999999999999999999999999999999999975

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.46  E-value=4.5e-14  Score=97.40  Aligned_cols=54  Identities=24%  Similarity=0.483  Sum_probs=51.0

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+++|++|.   +|+|.+|++++||.|++||+||++|+||+.++|+||.+|+|.+|+
T Consensus         3 ~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~   56 (79)
T d1iyua_           3 IIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVS   56 (79)
T ss_dssp             EEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEES
T ss_pred             EEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEe
Confidence            578999994   799999999999999999999999999999999999999999874

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.33  E-value=2e-12  Score=88.50  Aligned_cols=51  Identities=31%  Similarity=0.452  Sum_probs=46.2

Q ss_pred             eeccCCCCCCcccceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        163 IINMPSLSPTMTEGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       163 ~i~~P~lg~~~~~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      .+..|..      |+|.+|++++||+|++||+||.+|+||+.++|.||++|+|++|+
T Consensus        10 ~v~ap~~------G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~   60 (77)
T d1dcza_          10 EIPAPLA------GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVL   60 (77)
T ss_dssp             EEEBSSS------CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEEC
T ss_pred             EEECCCC------cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEe
Confidence            5666633      67999999999999999999999999999999999999999974

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5e-12  Score=87.03  Aligned_cols=59  Identities=25%  Similarity=0.420  Sum_probs=49.6

Q ss_pred             ceeeccCCCCCCcc-cceeeeEeecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEcC
Q psy10439        161 GQIINMPSLSPTMT-EGTIVKWLKKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKIL  219 (219)
Q Consensus       161 ~~~i~~P~lg~~~~-~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i~  219 (219)
                      +..+..|..|..+. ...-.+++|++||+|++||+||.+|+||+.++|.||.+|+|++|+
T Consensus         4 g~~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~   63 (80)
T d1bdoa_           4 GHIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAIL   63 (80)
T ss_dssp             SEEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEEC
T ss_pred             CCEEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEE
Confidence            44677888777653 222346899999999999999999999999999999999999985

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.60  E-value=4.7e-05  Score=55.71  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=40.8

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEec
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP  103 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~  103 (219)
                      |.|+.+.. ++|+.|++|+.++.||+.|+..+|.||.+|+|.+++-.
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~   81 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   81 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhh
Confidence            56666654 89999999999999999999999999999999988754

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=7.8e-05  Score=54.49  Aligned_cols=43  Identities=16%  Similarity=0.276  Sum_probs=37.9

Q ss_pred             ceeeeEe-ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWL-KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~-v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|..+. .++|+.|++|+.++.||+.|+..+|.||.+|+|.++
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~v   78 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEV   78 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEE
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEE
Confidence            4555543 489999999999999999999999999999999986

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.51  E-value=6.3e-05  Score=55.29  Aligned_cols=46  Identities=17%  Similarity=0.198  Sum_probs=40.4

Q ss_pred             EEEEEEEe-CCCCeEcCCCeEEEEeccCceeeEecCCCeEEEEEEec
Q psy10439         58 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP  103 (219)
Q Consensus        58 g~i~~w~v-~~Gd~V~~gd~l~~iet~K~~~~i~ap~~G~v~~i~v~  103 (219)
                      |.|+.+.. ++|+.|++|+.++.||+.|+..++.||.+|+|.+++-.
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~   82 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTG   82 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTH
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeehhh
Confidence            55666654 79999999999999999999999999999999888753

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=97.48  E-value=9.5e-05  Score=54.31  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=37.8

Q ss_pred             ceeeeEe-ecCCCeecCCCeEEEEeecceeeeeeCCCCeEEEEc
Q psy10439        176 GTIVKWL-KKEGDAVVPGDVLCEIQTDKAVMSFETEEEGILAKI  218 (219)
Q Consensus       176 ~~i~~~~-v~~Gd~V~~g~~l~~ve~~K~~~~i~a~~~G~v~~i  218 (219)
                      |.|..+. .++|+.|++||.++.||+.|+..++.||.+|+|.++
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~v   79 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEV   79 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEE
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheee
Confidence            4455543 479999999999999999999999999999999986

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.11  E-value=8.7e-05  Score=58.37  Aligned_cols=59  Identities=29%  Similarity=0.358  Sum_probs=50.4

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEecc----------------------------------------------------C
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTD----------------------------------------------------K   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~----------------------------------------------------K   84 (219)
                      .|.|.+|+|++||.|++||+|+.|++.                                                    .
T Consensus        23 ~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~~  102 (237)
T d1vf7a_          23 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  102 (237)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHHH
Confidence            499999999999999999999999870                                                    0


Q ss_pred             -----ceeeEecCCCeEEEEEEecCCCeeeecCcEEE
Q psy10439         85 -----AVMSFETEEEGILAKILVPENTTDVKVGTLIA  116 (219)
Q Consensus        85 -----~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~  116 (219)
                           ....+.||.+|++.+..+..|+. +..|....
T Consensus       103 a~~~l~~~~i~ap~~G~v~~~~~~~g~~-~~~~~~~~  138 (237)
T d1vf7a_         103 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANA  138 (237)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSC
T ss_pred             HhhhhcccccccchhceeeeEEeccCcE-EcCCccee
Confidence                 12349999999999999999998 88887544

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.95  E-value=0.0058  Score=47.33  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             EEeccCceeeEecCCCeEEEEEEecCCCeeeecCcEEEEEeec
Q psy10439         79 EIQTDKAVMSFETEEEGILAKILVPENTTDVKVGTLIAVMVEE  121 (219)
Q Consensus        79 ~iet~K~~~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i~~~  121 (219)
                      .|+.. -..+|.|+.+|+|.+++|++|+. |+.|++|+.|...
T Consensus         9 ~i~a~-~~~~V~s~v~G~V~~v~V~~G~~-VkkGq~L~~ld~~   49 (237)
T d1vf7a_           9 RTNAF-RIAEVRPQVNGIILKRLFKEGSD-VKAGQQLYQIDPA   49 (237)
T ss_dssp             ECEES-CEEEECCSSCEEEEECCSCSSEE-ECTTSEEEEECCH
T ss_pred             EEEee-EEEEEEeecCEEEEEEECCCcCE-ECCCCEEEEEehH
Confidence            34543 34679999999999999999999 9999999999653

>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=92.98  E-value=0.14  Score=31.99  Aligned_cols=17  Identities=29%  Similarity=0.407  Sum_probs=14.9

Q ss_pred             eEeecCCCeecCCCeEE
Q psy10439        180 KWLKKEGDAVVPGDVLC  196 (219)
Q Consensus       180 ~~~v~~Gd~V~~g~~l~  196 (219)
                      .++|++||.|++||.|.
T Consensus        45 ~l~V~eGd~V~~G~~LT   61 (64)
T d1e2wa2          45 DLIVKEGQTVQADQPLT   61 (64)
T ss_dssp             CBCCCTTCEECTTCBCB
T ss_pred             eEEECCCCEEeCCCccc
Confidence            56799999999999875

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.28  Score=35.85  Aligned_cols=27  Identities=30%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      .|+--++++++||+|++||+|+.+.-+
T Consensus        81 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~  107 (150)
T d2f3ga_          81 KGEGFKRIAEEGQRVKVGDTVIEFDLP  107 (150)
T ss_dssp             TTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred             CCcceEEEecCCCEECCCCEEEEEcHH
Confidence            366678999999999999999998543

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=92.18  E-value=0.31  Score=35.87  Aligned_cols=27  Identities=37%  Similarity=0.534  Sum_probs=23.3

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      .|+.-+++++.||+|++||+|+.+.-+
T Consensus        89 ~G~gF~~~v~~Gd~Vk~G~~L~~~D~~  115 (158)
T d1gpra_          89 KGEGFTSFVSEGDRVEPGQKLLEVDLD  115 (158)
T ss_dssp             TTTTEEECCCTTCEECTTCEEEEECHH
T ss_pred             CCcceEEEEcCCCEEcCCCEEEEeCHH
Confidence            466789999999999999999998543

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=91.74  E-value=0.35  Score=35.41  Aligned_cols=27  Identities=19%  Similarity=0.305  Sum_probs=23.4

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      .|+.-++++++||+|++||+|+.+.-+
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~  113 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDLK  113 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHH
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcHH
Confidence            477789999999999999999999543

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.87  E-value=0.13  Score=35.17  Aligned_cols=29  Identities=28%  Similarity=0.385  Sum_probs=24.5

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecce
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDKA  203 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K~  203 (219)
                      .+.-..++++.||.|++||+|+.+-+++.
T Consensus        44 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~~   72 (103)
T d1brwa3          44 LAVGIVLHKKIGDRVQKGEALATIHSNRP   72 (103)
T ss_dssp             TTCEEEESCCTTCEECTTCEEEEEEESSS
T ss_pred             cccceEEeccCCCEEcCCCeEEEEEcCCc
Confidence            34457899999999999999999987653

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.23  E-value=0.097  Score=35.89  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=24.1

Q ss_pred             CceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439         55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   84 (219)
Q Consensus        55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K   84 (219)
                      ++.+.=..++++.||.|++||+|+.|-+++
T Consensus        42 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          42 IDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             cCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            344455689999999999999999987754

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=89.66  E-value=0.06  Score=39.82  Aligned_cols=58  Identities=17%  Similarity=0.330  Sum_probs=37.5

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCce---------eeEecCCCeEEEEEEecCCCeeeecCcEEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAV---------MSFETEEEGILAKILVPENTTDVKVGTLIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~---------~~i~ap~~G~v~~i~v~~Gd~~V~~G~~l~~i  118 (219)
                      +|+--+++|++||+|++||+|+++.-+...         +-+.-....   .+....... |..|+.++.+
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~---~~~~~~~g~-V~~Gd~i~~i  153 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGK---TLEIVKMGE-VKQGDVVAIL  153 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSC---CCSCBCCEE-ECTTCEEEEE
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcHHHHHhcCCCCceEEEEEcCCCc---eEEecccCc-CcCCCEEEEe
Confidence            577789999999999999999999764331         112221111   122223334 8888888765

>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Phormidium laminosum [TaxId: 32059]

Probab=89.03  E-value=0.48  Score=29.06  Aligned_cols=17  Identities=29%  Similarity=0.556  Sum_probs=14.7

Q ss_pred             eEeecCCCeecCCCeEE
Q psy10439        180 KWLKKEGDAVVPGDVLC  196 (219)
Q Consensus       180 ~~~v~~Gd~V~~g~~l~  196 (219)
                      ..+|++||.|++||.|.
T Consensus        43 ~l~V~eGd~V~aG~~LT   59 (62)
T d1ci3m2          43 ELIVSEGEEVAAGAALT   59 (62)
T ss_dssp             CBCCCTTCEECTTCBSB
T ss_pred             EEEECCCCEEeCCCccc
Confidence            46789999999999875

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=88.91  E-value=0.13  Score=38.02  Aligned_cols=28  Identities=36%  Similarity=0.533  Sum_probs=24.4

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDK   84 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K   84 (219)
                      +|+--+++|++||+|++||+|+++.-+.
T Consensus        89 ~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~  116 (158)
T d1gpra_          89 KGEGFTSFVSEGDRVEPGQKLLEVDLDA  116 (158)
T ss_dssp             TTTTEEECCCTTCEECTTCEEEEECHHH
T ss_pred             CCcceEEEEcCCCEEcCCCEEEEeCHHH
Confidence            4666799999999999999999997753

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.73  E-value=0.16  Score=34.91  Aligned_cols=30  Identities=17%  Similarity=0.239  Sum_probs=23.8

Q ss_pred             CceEEEEEEEeCCCCeEcCCCeEEEEeccC
Q psy10439         55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   84 (219)
Q Consensus        55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~K   84 (219)
                      ++.+.=..++++.||.|++||+|+.|-++.
T Consensus        40 ID~~vGi~l~~k~Gd~V~~G~~l~~ih~~~   69 (105)
T d1uoua3          40 LRLGVGAELLVDVGQRLRRGTPWLRVHRDG   69 (105)
T ss_dssp             CCSSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred             cCccccEEEeecCCCEEcCCCeEEEEECCC
Confidence            344445689999999999999999987653

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.52  E-value=0.21  Score=34.26  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=24.0

Q ss_pred             cceeeeEeecCCCeecCCCeEEEEeecc
Q psy10439        175 EGTIVKWLKKEGDAVVPGDVLCEIQTDK  202 (219)
Q Consensus       175 ~~~i~~~~v~~Gd~V~~g~~l~~ve~~K  202 (219)
                      -+.-..++++.||.|++||+||.|-++.
T Consensus        42 ~~vGi~l~~k~Gd~V~~G~~l~~ih~~~   69 (105)
T d1uoua3          42 LGVGAELLVDVGQRLRRGTPWLRVHRDG   69 (105)
T ss_dssp             SSCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred             ccccEEEeecCCCEEcCCCeEEEEECCC
Confidence            3455789999999999999999997764

>d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Anabaena sp., strain PCC 7120 [TaxId: 1167]

Probab=88.41  E-value=0.41  Score=29.97  Aligned_cols=16  Identities=44%  Similarity=0.715  Sum_probs=13.8

Q ss_pred             eEeecCCCeecCCCeE
Q psy10439        180 KWLKKEGDAVVPGDVL  195 (219)
Q Consensus       180 ~~~v~~Gd~V~~g~~l  195 (219)
                      +..|++||.|+.||+|
T Consensus        47 eLiVseG~~VkadqpL   62 (66)
T d1tu2b2          47 ELIVSEGQAVTAGDAL   62 (66)
T ss_dssp             CBSCCTTCEECTTCBS
T ss_pred             eEEEcCCCEEecCCcc
Confidence            4568999999999987

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.10  E-value=0.21  Score=34.68  Aligned_cols=26  Identities=27%  Similarity=0.435  Sum_probs=22.2

Q ss_pred             EEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439         58 GTIVKWLKKEGDAVAPGDVLCEIQTD   83 (219)
Q Consensus        58 g~i~~w~v~~Gd~V~~gd~l~~iet~   83 (219)
                      +--..|+++.|+.|++||.|++|+-.
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G~   95 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEAQ   95 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEech
Confidence            34458999999999999999999853

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=0.24  Score=33.86  Aligned_cols=26  Identities=19%  Similarity=0.118  Sum_probs=22.8

Q ss_pred             ceeeeEeecCCCeecCCCeEEEEeec
Q psy10439        176 GTIVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       176 ~~i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      +.-..++++.||.|++||+|+.|-++
T Consensus        45 ~vGi~l~~k~Gd~V~~Gd~l~~i~~~   70 (105)
T d2tpta3          45 SVGFTDMARLGDQVDGQRPLAVIHAK   70 (105)
T ss_dssp             SCEEESCCCTTCEEBTTBCSEEEEES
T ss_pred             cccEEEEecCCCEEcCCCeEEEEECC
Confidence            44578999999999999999999775

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=85.49  E-value=0.14  Score=35.25  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=23.5

Q ss_pred             CceEEEEEEEeCCCCeEcCCCeEEEEecc
Q psy10439         55 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   83 (219)
Q Consensus        55 ~~~g~i~~w~v~~Gd~V~~gd~l~~iet~   83 (219)
                      ++.+.=..++++.||.|++||+|+.|-++
T Consensus        42 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~   70 (105)
T d2tpta3          42 IDYSVGFTDMARLGDQVDGQRPLAVIHAK   70 (105)
T ss_dssp             CCSSCEEESCCCTTCEEBTTBCSEEEEES
T ss_pred             CCCcccEEEEecCCCEEcCCCeEEEEECC
Confidence            33444568999999999999999999775

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=85.19  E-value=0.45  Score=34.67  Aligned_cols=60  Identities=18%  Similarity=0.255  Sum_probs=37.6

Q ss_pred             eEEEEEEEeCCCCeEcCCCeEEEEeccCce-------eeEecCCCeEEEEEEecCCCeeeecCc-EEEEE
Q psy10439         57 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-------MSFETEEEGILAKILVPENTTDVKVGT-LIAVM  118 (219)
Q Consensus        57 ~g~i~~w~v~~Gd~V~~gd~l~~iet~K~~-------~~i~ap~~G~v~~i~v~~Gd~~V~~G~-~l~~i  118 (219)
                      +|+--+++|++||+|++||+|+++.-+...       ..+--.-......+....| . +..|+ +|+.+
T Consensus        81 ~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvitn~~~~~~~~~~~g-~-v~~g~~~i~~i  148 (150)
T d2f3ga_          81 KGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-S-VTVGETPVIRI  148 (150)
T ss_dssp             TTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEETTGGGCSEEEECCS-E-ECTTTSEEEEE
T ss_pred             CCcceEEEecCCCEECCCCEEEEEcHHHHHhcCCCCeeEEEEECcHhcceeeecCC-c-EeeCCcEEEEE
Confidence            466678999999999999999999764331       1111112223334444455 4 77776 56655

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.76  E-value=0.29  Score=34.33  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.4

Q ss_pred             EEEEeCCCCeEcCCCeEEEEec
Q psy10439         61 VKWLKKEGDAVAPGDVLCEIQT   82 (219)
Q Consensus        61 ~~w~v~~Gd~V~~gd~l~~iet   82 (219)
                      .+|+++.||.|++|+.|++|+-
T Consensus        80 ~~~~~~DG~~v~~G~~i~~i~G  101 (122)
T d1qapa2          80 LTWHVDDGDAIHANQTVFELQG  101 (122)
T ss_dssp             EEESCCTTCEECTTCEEEEEEE
T ss_pred             EEecccCccEEecCceEEEEEE
Confidence            5899999999999999999985

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.09  E-value=0.41  Score=33.12  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=21.3

Q ss_pred             eeeEeecCCCeecCCCeEEEEeec
Q psy10439        178 IVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       178 i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      -..|+++.|+.|++||+|+.++..
T Consensus        72 ~~~~~~~DG~~v~~G~~I~~i~G~   95 (115)
T d1qpoa2          72 RVLDRVEDGARVPPGEALMTLEAQ   95 (115)
T ss_dssp             EEEEECCTTCEECTTCEEEEEEEE
T ss_pred             ceeeecCCCCEEecceeEEEEech
Confidence            357999999999999999999864

>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.80  E-value=0.31  Score=32.96  Aligned_cols=22  Identities=23%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             EEEEeCCCCeEcCCCeEEEEec
Q psy10439         61 VKWLKKEGDAVAPGDVLCEIQT   82 (219)
Q Consensus        61 ~~w~v~~Gd~V~~gd~l~~iet   82 (219)
                      +.|+++.||.|++|+.|++++-
T Consensus        61 v~~~~~dG~~v~~g~~I~~i~G   82 (103)
T d1o4ua2          61 SKFNVEDGEYLEGTGVIGEIEG   82 (103)
T ss_dssp             EEESCCTTCEEESCEEEEEEEE
T ss_pred             eeeecCCCCEEEcCceEEEEec
Confidence            5899999999999999999975

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.27  E-value=0.51  Score=32.94  Aligned_cols=24  Identities=25%  Similarity=0.529  Sum_probs=21.4

Q ss_pred             eeeEeecCCCeecCCCeEEEEeec
Q psy10439        178 IVKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       178 i~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      -..|+++.|+.|++|++|+.++..
T Consensus        79 ~~~~~~~DG~~v~~G~~i~~i~G~  102 (122)
T d1qapa2          79 RLTWHVDDGDAIHANQTVFELQGP  102 (122)
T ss_dssp             EEEESCCTTCEECTTCEEEEEEEE
T ss_pred             EEEecccCccEEecCceEEEEEEc
Confidence            468999999999999999999754

>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.39  E-value=0.48  Score=31.92  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             eeEeecCCCeecCCCeEEEEeec
Q psy10439        179 VKWLKKEGDAVVPGDVLCEIQTD  201 (219)
Q Consensus       179 ~~~~v~~Gd~V~~g~~l~~ve~~  201 (219)
                      ..|+++.|+.|++|++|++++.+
T Consensus        61 v~~~~~dG~~v~~g~~I~~i~G~   83 (103)
T d1o4ua2          61 SKFNVEDGEYLEGTGVIGEIEGN   83 (103)
T ss_dssp             EEESCCTTCEEESCEEEEEEEEE
T ss_pred             eeeecCCCCEEEcCceEEEEecc
Confidence            58999999999999999999753