Psyllid ID: psy10440

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60----
Protein Sequence
MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEccccEEccccEEEEEEEccEEEEEEEcccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHEEHccccccccccEEEEEEccccEEEEEcccccEEEEEEEccccccccc
Coil and Loop (DISEMBL)
mpslsptmteGTIVKWLKkegdavapgdvlcEIQTDKAVMSFETEEEGILAKIlvpenttdgkv
Flexible Loop (DISEMBL)
mpslsptmtEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFEteeegilakilvpenttdgkv
Low Complexity Region (SEG)
MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV
Disordered region (IsUnstruct)
***********TIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV*********
Disordered Region (DISOPRED)
*PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT*****
Disordered Region (DISEMBL)
********TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV
Disordered Region (DISPRO)
*********EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	64	2.2.26 [Sep-21-2011]
O66119	440	Dihydrolipoyllysine-resid	yes	N/A	0.953	0.138	0.688	6e-19
Q0WQF7	637	Dihydrolipoyllysine-resid	yes	N/A	0.953	0.095	0.672	2e-18
Q92HK7	412	Dihydrolipoyllysine-resid	yes	N/A	0.953	0.148	0.622	1e-17
P12695	482	Dihydrolipoyllysine-resid	yes	N/A	0.953	0.126	0.639	2e-17
Q9ZD20	408	Dihydrolipoyllysine-resid	yes	N/A	0.953	0.149	0.606	2e-17
Q4ULG1	412	Dihydrolipoyllysine-resid	yes	N/A	0.953	0.148	0.622	3e-17
Q5M729	539	Dihydrolipoyllysine-resid	no	N/A	1.0	0.118	0.640	5e-17
P22439	501	Pyruvate dehydrogenase pr	yes	N/A	0.953	0.121	0.655	5e-17
Q8RWN9	539	Dihydrolipoyllysine-resid	no	N/A	1.0	0.118	0.640	6e-17
O00330	501	Pyruvate dehydrogenase pr	no	N/A	0.953	0.121	0.655	7e-17

>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 51/61 (83%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+LSPTMTEGT+ KWL KEGDAV  GD+L EI+TDKA+M FET + GI+AKILVPE + 
Sbjct: 7  MPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPEGSE 66

Query: 61 D 61
          +
Sbjct: 67 N 67

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q0WQF7|OPD21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 50/61 (81%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MP+LSPTM+ G +VKW+KKEGD V  GDVLCEI+TDKA + FE++EEG LAKILV E + 
Sbjct: 90  MPALSPTMSHGNVVKWMKKEGDKVEVGDVLCEIETDKATVEFESQEEGFLAKILVTEGSK 149

Query: 61  D 61
           D
Sbjct: 150 D 150

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q92HK7|ODP2_RICCN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhC PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 50/61 (81%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+LSPTMTEG + +WLKKEGD V PG+V+ EI+TDKA M  E  +EGILAKI++P+N+ 
Sbjct: 7  MPALSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQNSQ 66

Query: 61 D 61
          +
Sbjct: 67 N 67

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P12695|ODP2_YEAST Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LAT1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+LSPTMT+G +  W KKEGD ++PG+V+ EI+TDKA M FE +E+G LAKILVPE T 
Sbjct: 39 MPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTK 98

Query: 61 D 61
          D
Sbjct: 99 D 99

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9ZD20|ODP2_RICPR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia prowazekii (strain Madrid E) GN=pdhC PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 50/61 (81%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+LSPTM EG + +WLKKEGD V PG+V+ EI+TDKA M  E+ +EGILAKI++P+N+ 
Sbjct: 7  MPALSPTMREGNLARWLKKEGDKVNPGEVIAEIETDKATMEVESVDEGILAKIIIPQNSQ 66

Query: 61 D 61
          +
Sbjct: 67 N 67

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q4ULG1|ODP2_RICFE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhC PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 49/61 (80%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP LSPTMTEG + +WLKKEGD V PG+V+ EI+TDKA M  E  +EGILAKI++P+N+ 
Sbjct: 7  MPVLSPTMTEGNLARWLKKEGDKVNPGEVIAEIETDKATMEVEAVDEGILAKIVIPQNSQ 66

Query: 61 D 61
          +
Sbjct: 67 N 67

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTMTEG I +WLKKEGD VAPG+VLCE++TDKA +  E  EEG LAKI+  E + 
Sbjct: 116 MPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYLAKIVKAEGSK 175

Query: 61  DGKV 64
           + +V
Sbjct: 176 EIQV 179

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P22439|ODPX_BOVIN Pyruvate dehydrogenase protein X component OS=Bos taurus GN=PDHX PE=1 SV=3

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 51/61 (83%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E + 
Sbjct: 61  MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAEGSK 120

Query: 61  D 61
           +
Sbjct: 121 N 121

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Bos taurus (taxid: 9913)

>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 49/64 (76%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTMTEG I +WLKKEGD VAPG+VLCE++TDKA +  E  EEG LAKI+  E   
Sbjct: 116 MPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGFLAKIVKEEGAK 175

Query: 61  DGKV 64
           + +V
Sbjct: 176 EIQV 179

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O00330|ODPX_HUMAN Pyruvate dehydrogenase protein X component, mitochondrial OS=Homo sapiens GN=PDHX PE=1 SV=3

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 51/61 (83%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E + 
Sbjct: 61  MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 120

Query: 61  D 61
           +
Sbjct: 121 N 121

Required for anchoring dihydrolipoamide dehydrogenase (E3) to the dihydrolipoamide transacetylase (E2) core of the pyruvate dehydrogenase complexes of eukaryotes. This specific binding is essential for a functional PDH complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
328697856	592	PREDICTED: dihydrolipoyllysine-residue a	1.0	0.108	0.812	2e-22
242011723	539	Lipoamide acyltransferase component of b	1.0	0.118	0.812	3e-21
321479230	474	hypothetical protein DAPPUDRAFT_299977 [	1.0	0.135	0.75	1e-20
322790253	618	hypothetical protein SINV_09465 [Solenop	0.921	0.095	0.813	3e-20
332024671	585	Dihydrolipoyllysine-residue acetyltransf	0.921	0.100	0.779	1e-19
350417800	601	PREDICTED: dihydrolipoyllysine-residue a	0.921	0.098	0.762	6e-19
307183310	588	Dihydrolipoyllysine-residue acetyltransf	0.921	0.100	0.745	9e-19
391342826	464	PREDICTED: pyruvate dehydrogenase protei	0.875	0.120	0.767	1e-18
380019888	621	PREDICTED: LOW QUALITY PROTEIN: dihydrol	0.921	0.095	0.762	1e-18
340729384	597	PREDICTED: LOW QUALITY PROTEIN: dihydrol	0.921	0.098	0.745	2e-18

>gi|328697856|ref|XP_001945646.2| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Acyrthosiphon pisum]

 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 58/64 (90%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTMTEG IVKWLKKEGD ++ GDVLCEIQTDKAVMSFETEEEG+LAKILVP++  
Sbjct: 50  MPSLSPTMTEGNIVKWLKKEGDKISAGDVLCEIQTDKAVMSFETEEEGVLAKILVPDDAK 109

Query: 61  DGKV 64
           + KV
Sbjct: 110 EIKV 113

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011723|ref|XP_002426596.1| Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Pediculus humanus corporis] gi|212510745|gb|EEB13858.1| Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase, putative [Pediculus humanus corporis]

 Score =  105 bits (263), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/64 (81%), Positives = 56/64 (87%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MPSLSPTM EG IVKWLKKEGD V PGDVLC+I+TDKAV+S ETEEEGILAKILVPEN +
Sbjct: 1  MPSLSPTMMEGKIVKWLKKEGDTVNPGDVLCDIETDKAVVSMETEEEGILAKILVPENVS 60

Query: 61 DGKV 64
            KV
Sbjct: 61 QIKV 64

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321479230|gb|EFX90186.1| hypothetical protein DAPPUDRAFT_299977 [Daphnia pulex]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 57/64 (89%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTMT GTIV W KKEG+ V+PGDVLCEIQTDKAVM+FETEEEG+LAKI V ++++
Sbjct: 47  MPSLSPTMTSGTIVNWHKKEGETVSPGDVLCEIQTDKAVMAFETEEEGVLAKIYVGDDSS 106

Query: 61  DGKV 64
           D +V
Sbjct: 107 DVQV 110

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790253|gb|EFZ15252.1| hypothetical protein SINV_09465 [Solenopsis invicta]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
           MP+LSPTMT GTIVKWLKKEGD + PGD L EIQTDKAVMSFE EEEGILAKIL+PE +
Sbjct: 200 MPALSPTMTTGTIVKWLKKEGDEIQPGDALAEIQTDKAVMSFELEEEGILAKILIPEGS 258

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024671|gb|EGI64864.1| Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Acromyrmex echinatior]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
           MP+LSPTMT GTIVKWLKKEGD + PGD L +IQTDKAVMSFE EEEG+LAKIL+PE +
Sbjct: 167 MPALSPTMTTGTIVKWLKKEGDEIQPGDALADIQTDKAVMSFELEEEGVLAKILIPEGS 225

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417800|ref|XP_003491601.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Bombus impatiens]

 Score = 98.2 bits (243), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 51/59 (86%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
           MP+LSPTMT GTIVKWLKKEGD + PGD L EIQTDKAVM+FE E+EG+ AKILVPE +
Sbjct: 184 MPALSPTMTTGTIVKWLKKEGDEIEPGDALAEIQTDKAVMTFEIEDEGVFAKILVPEGS 242

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183310|gb|EFN70179.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Camponotus floridanus]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 52/59 (88%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
           MP+LSPTMT GTI+KWLK+EGD + PGD L +IQTDKAVM+FE EEEG+LAKILVPE +
Sbjct: 169 MPALSPTMTTGTIIKWLKQEGDEIQPGDALADIQTDKAVMTFELEEEGVLAKILVPEGS 227

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391342826|ref|XP_003745716.1| PREDICTED: pyruvate dehydrogenase protein X component-like [Metaseiulus occidentalis]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 49/56 (87%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
          MPSLSPTMTEG IV+W+K EGDA+ PGDVLCEIQTDKAV++FE EE G LAKI+ P
Sbjct: 43 MPSLSPTMTEGVIVRWMKNEGDAIQPGDVLCEIQTDKAVVAFEVEEPGTLAKIIAP 98

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019888|ref|XP_003693833.1| PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Apis florea]

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 52/59 (88%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
           MP+LSPTMT GTIVKWLKKEG+A+ PGD + EIQTDKAVM+FE E+E ILAKILVPE +
Sbjct: 187 MPALSPTMTSGTIVKWLKKEGEAIEPGDAVAEIQTDKAVMTFEIEDESILAKILVPEGS 245

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729384|ref|XP_003402984.1| PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [Bombus terrestris]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 51/59 (86%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
           MP+LSPTMT GTIVKWLKKEG+ + PGD L EIQTDKAVM+FE E+EG+ AKILVPE +
Sbjct: 174 MPALSPTMTTGTIVKWLKKEGEEIEPGDALAEIQTDKAVMTFEVEDEGVFAKILVPEGS 232

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	64
UNIPROTKB|Q0C0R7	470	pdhB "Pyruvate dehydrogenase c	1.0	0.136	0.656	1.1e-17
UNIPROTKB|E9PLU0	151	PDHX "Pyruvate dehydrogenase p	0.921	0.390	0.677	1.2e-17
TIGR_CMR|SPO_2242	437	SPO_2242 "pyruvate dehydrogena	1.0	0.146	0.656	2.5e-17
SGD|S000005015	482	LAT1 "Dihydrolipoamide acetylt	0.953	0.126	0.639	6.9e-17
UNIPROTKB|E9PB14	486	PDHX "Pyruvate dehydrogenase p	0.921	0.121	0.677	7.1e-17
UNIPROTKB|F1SGT3	500	PDHX "Uncharacterized protein"	0.921	0.118	0.677	7.6e-17
UNIPROTKB|P22439	501	PDHX "Pyruvate dehydrogenase p	0.921	0.117	0.677	7.6e-17
UNIPROTKB|E2RM20	501	PDHX "Uncharacterized protein"	0.921	0.117	0.677	7.6e-17
UNIPROTKB|O00330	501	PDHX "Pyruvate dehydrogenase p	0.921	0.117	0.677	7.6e-17
TAIR|locus:2020173	539	AT1G54220 [Arabidopsis thalian	1.0	0.118	0.640	9e-17

UNIPROTKB|Q0C0R7 pdhB "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, beta subunit" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 42/64 (65%), Positives = 51/64 (79%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
             MP+LSPTM EGT+ KWLKKEGDA+  GDV+ EI+TDKA M  E  +EG+LAKI+VPE T 
Sbjct:     7 MPALSPTMEEGTLSKWLKKEGDAIKSGDVIAEIETDKATMEVEAVDEGVLAKIVVPEGTE 66

Query:    61 DGKV 64
             + KV
Sbjct:    67 NVKV 70

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

UNIPROTKB|E9PLU0 PDHX "Pyruvate dehydrogenase protein X component, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
             MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E +
Sbjct:     1 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS 59

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TIGR_CMR|SPO_2242 SPO_2242 "pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 218 (81.8 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 42/64 (65%), Positives = 50/64 (78%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
             MP+LSPTM EGT+ KWL KEGD+V+ GD+L EI+TDKA M FE  +EGI+ KILVPE T 
Sbjct:     7 MPALSPTMEEGTLAKWLVKEGDSVSSGDLLAEIETDKATMEFEAVDEGIVGKILVPEGTE 66

Query:    61 DGKV 64
               KV
Sbjct:    67 GVKV 70

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

SGD|S000005015 LAT1 "Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 215 (80.7 bits), Expect = 6.9e-17, P = 6.9e-17
 Identities = 39/61 (63%), Positives = 49/61 (80%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
             MP+LSPTMT+G +  W KKEGD ++PG+V+ EI+TDKA M FE +E+G LAKILVPE T 
Sbjct:    39 MPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTK 98

Query:    61 D 61
             D
Sbjct:    99 D 99

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=IEA;IDA;IPI

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IEA;IDA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

UNIPROTKB|E9PB14 PDHX "Pyruvate dehydrogenase protein X component, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 7.1e-17, P = 7.1e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
             MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E +
Sbjct:    46 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS 104

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|F1SGT3 PDHX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 215 (80.7 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
             MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E +
Sbjct:    59 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAEGS 117

GO:0005739 "mitochondrion" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|P22439 PDHX "Pyruvate dehydrogenase protein X component" [Bos taurus (taxid:9913)]

 Score = 215 (80.7 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
             MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E +
Sbjct:    61 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVAEGS 119

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|E2RM20 PDHX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
             MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E +
Sbjct:    61 MPSLSPTMEEGNIVKWLKKEGEAVSTGDALCEIETDKAVVTLDASDDGILAKIVVEEGS 119

GO:0005739 "mitochondrion" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|O00330 PDHX "Pyruvate dehydrogenase protein X component, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 215 (80.7 bits), Expect = 7.6e-17, P = 7.6e-17
 Identities = 40/59 (67%), Positives = 50/59 (84%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
             MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E +
Sbjct:    61 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS 119

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

TAIR|locus:2020173 AT1G54220 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 9.0e-17, P = 9.0e-17
 Identities = 41/64 (64%), Positives = 50/64 (78%)

Query:     1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
             MPSLSPTMTEG I +WLKKEGD VAPG+VLCE++TDKA +  E  EEG LAKI+  E + 
Sbjct:   116 MPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYLAKIVKAEGSK 175

Query:    61 DGKV 64
             + +V
Sbjct:   176 EIQV 179

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q19749	ODP2_CAEEL	2, ., 3, ., 1, ., 1, 2	0.6393	0.9531	0.1203	yes	N/A
Q0WQF7	OPD21_ARATH	2, ., 3, ., 1, ., 1, 2	0.6721	0.9531	0.0957	yes	N/A
Q4ULG1	ODP2_RICFE	2, ., 3, ., 1, ., 1, 2	0.6229	0.9531	0.1480	yes	N/A
Q9ZD20	ODP2_RICPR	2, ., 3, ., 1, ., 1, 2	0.6065	0.9531	0.1495	yes	N/A
Q68WK6	ODP2_RICTY	2, ., 3, ., 1, ., 1, 2	0.5901	0.9531	0.1509	yes	N/A
P12695	ODP2_YEAST	2, ., 3, ., 1, ., 1, 2	0.6393	0.9531	0.1265	yes	N/A
Q9R9N3	ODP2_RHIME	2, ., 3, ., 1, ., 1, 2	0.5937	1.0	0.1431	yes	N/A
Q8BKZ9	ODPX_MOUSE	No assigned EC number	0.6229	0.9531	0.1217	yes	N/A
O66119	ODP2_ZYMMO	2, ., 3, ., 1, ., 1, 2	0.6885	0.9531	0.1386	yes	N/A
P36413	ODP2_DICDI	2, ., 3, ., 1, ., 1, 2	0.6166	0.9218	0.0929	yes	N/A
P08461	ODP2_RAT	2, ., 3, ., 1, ., 1, 2	0.6065	0.9531	0.0965	yes	N/A
Q1RJT3	ODP2_RICBR	2, ., 3, ., 1, ., 1, 2	0.5737	0.9531	0.1459	yes	N/A
P22439	ODPX_BOVIN	No assigned EC number	0.6557	0.9531	0.1217	yes	N/A
O59816	ODP2_SCHPO	2, ., 3, ., 1, ., 1, 2	0.6065	0.9531	0.1262	yes	N/A
Q92HK7	ODP2_RICCN	2, ., 3, ., 1, ., 1, 2	0.6229	0.9531	0.1480	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	64
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	3e-30
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	3e-29
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	1e-26
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	9e-26
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	5e-25
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-21
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	9e-18
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-14
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	7e-14
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	1e-13
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	4e-12
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-09
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	4e-09
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	1e-08
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	3e-08
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-07
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	7e-07
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	4e-06
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	2e-05
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	6e-05
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	7e-05
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	4e-04
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	4e-04
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	7e-04
pfam02749	88	pfam02749, QRPTase_N, Quinolinate phosphoribosyl t	0.001
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	0.002
cd01572	268	cd01572, QPRTase, Quinolinate phosphoribosyl trans	0.003

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  108 bits (273), Expect = 3e-30
 Identities = 42/64 (65%), Positives = 47/64 (73%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+LSPTM EGT+ KWLKKEGD V  GDV+ EI+TDKA M  E  +EG L KILVPE T 
Sbjct: 7  MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTE 66

Query: 61 DGKV 64
            KV
Sbjct: 67 GVKV 70

Length = 464

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  106 bits (265), Expect = 3e-29
 Identities = 45/64 (70%), Positives = 49/64 (76%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+LSPTMT G + KWLKKEGD V PGDV+ EI+TDKA M FE  EEG LAKILVPE T 
Sbjct: 4  MPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTK 63

Query: 61 DGKV 64
          D  V
Sbjct: 64 DVPV 67

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =   99 bits (249), Expect = 1e-26
 Identities = 40/64 (62%), Positives = 49/64 (76%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MPSLSPTMTEG I +WLKKEGD V+PG+VLCE++TDKA +  E  EEG LAKI+  +   
Sbjct: 117 MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAK 176

Query: 61  DGKV 64
           + KV
Sbjct: 177 EIKV 180

Length = 539

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 96.4 bits (241), Expect = 9e-26
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP L   MTEG IV+WL K GD V  G  L E++TDKA +   +   G +AK+LV E   
Sbjct: 7  MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66

Length = 411

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score = 87.5 bits (218), Expect = 5e-25
 Identities = 36/60 (60%), Positives = 43/60 (71%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP L  +MTEGTIV+WL KEGD+V  GDVL E++TDKA +  E    G+LAKILV E  T
Sbjct: 5  MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT 64

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score = 84.8 bits (210), Expect = 1e-21
 Identities = 37/60 (61%), Positives = 42/60 (70%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP L  TMTEGTIV+WLKK GD V  GDVL E++TDKA M     + G+LAKILV E  T
Sbjct: 7  MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT 66

Length = 404

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 74.2 bits (183), Expect = 9e-18
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP    +MTEG +  WL +EGD V  GD L +++TDK     E    G L + +  E  T
Sbjct: 7  MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET 66

Length = 371

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 64.9 bits (159), Expect = 2e-14
 Identities = 27/59 (45%), Positives = 36/59 (61%)

Query: 2  PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          P+L  ++TE TI  W KK GDAV   +VL EI+TDK V+       G+L++IL  E  T
Sbjct: 8  PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT 66

Length = 407

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 59.0 bits (143), Expect = 7e-14
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query: 2  PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          P L+  + +GT+VKWLKK GD V  GDVL EI+  KA    E  + G + K+LV E T 
Sbjct: 5  PDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK 63

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 2  PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          P L+ ++TEGT+ +W KK GD V   + + EI+TDK V+   +  +G+L +IL  E  T
Sbjct: 6  PELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT 64

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 54.5 bits (132), Expect = 4e-12
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           P +  ++ EGT  +WL K GD V  G VLCE++  K  M       G++ +ILV E  T
Sbjct: 5  SPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 2   PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           P++  +++EGT+V+W KK GD V   +V+C I+TDK  +       G++ KI   E  T
Sbjct: 50  PTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT 108

Length = 418

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 49.8 bits (120), Expect = 4e-09
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 9  TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           E  +++WL KEGD V     L  ++TDKA M   +   G++ +I V    T
Sbjct: 14 VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT 65

Length = 547

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 48.9 bits (116), Expect = 1e-08
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MP+L  ++TEGT+  WLK  GD V   + L E+ TDK      +   G+L +I  PE+ T
Sbjct: 7  MPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPEDDT 66

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 47.5 bits (114), Expect = 3e-08
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 9   TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           TE  +++WL K GD V     L  ++TDKA M   +   G++ +I V     
Sbjct: 131 TEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK 182

Length = 547

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 32/60 (53%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           MP L  ++TEGT+  WLK  GD V   + L E+ TDK      +   G L +I  PE+ T
Sbjct: 131 MPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDT 190

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 41.2 bits (98), Expect = 7e-07
 Identities = 18/50 (36%), Positives = 24/50 (48%)

Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          GT+VK L KEGD V  G  L  ++  K          G++ +ILV E   
Sbjct: 8  GTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ 57

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 1   MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           +P +  ++T+GT+  +LKK G+ V   + + +I+TDK  +   +   G++ + LV E  T
Sbjct: 96  VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT 155

Length = 463

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 9  TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
           E  + + L K GD V     L  ++ DKA M   + + G++ +I V  
Sbjct: 13 DEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKV 61

Length = 633

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54
          +++W  KEGD V     LCE+Q+DKA +   +  +G +A+I 
Sbjct: 15 LLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQIN 56

Length = 416

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 11  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
           GT+ K   + GD V  G  L  I+  K     E   +G++ +ILV
Sbjct: 79  GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILV 123

Length = 140

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score = 35.9 bits (84), Expect = 4e-04
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEE 47
           GT+ K L +EGD V  G V+  I+ +    +    E 
Sbjct: 53 AGTVAKLLVEEGDVVPVGSVIAVIEEEGEAEAAAAAEA 90

Length = 411

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 9   TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
            E  + + L K GD V     L  ++ DKA M       G + +I V     
Sbjct: 116 DEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 167

Length = 633

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 13/52 (25%), Positives = 20/52 (38%)

Query: 9   TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
            E  + + + K GD V     L  ++ DKA M       G + +I V     
Sbjct: 217 DEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK 268

Length = 633

>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase, N-terminal domain

 Score = 33.6 bits (78), Expect = 0.001
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
          V+WL K+G+ V  GDV+ EI+
Sbjct: 47 VEWLVKDGERVEAGDVILEIE 67

Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyzes the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The N-terminal domain has an alpha/beta hammerhead fold. Length = 88

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 17/46 (36%), Positives = 26/46 (56%)

Query: 10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV 55
          EG +++ L K GD V  G  L  +++DKA M   +   GI+ +I V
Sbjct: 13 EGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKV 58

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

 Score = 33.2 bits (77), Expect = 0.003
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
          V+WL K+GD V PG VL  ++
Sbjct: 60 VEWLVKDGDRVEPGQVLATVE 80

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	64
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.79
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.79
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.77
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.74
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.74
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.7
PRK06748	83	hypothetical protein; Validated	99.7
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.7
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.69
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.68
KOG0557|consensus	470		99.66
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.65
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.61
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.59
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.59
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.59
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.59
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	99.59
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.57
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.54
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.53
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.53
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	99.52
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.51
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.51
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.48
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.48
KOG0559|consensus	457		99.46
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.45
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.4
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.4
PRK07051	80	hypothetical protein; Validated	99.4
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	99.38
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.38
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.38
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.35
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.35
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	99.33
PRK14040	593	oxaloacetate decarboxylase; Provisional	99.3
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	99.29
PRK09282	592	pyruvate carboxylase subunit B; Validated	99.2
PRK12999	1146	pyruvate carboxylase; Reviewed	99.17
KOG0558|consensus	474		99.13
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	99.12
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	99.1
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.1
PRK13380	144	glycine cleavage system protein H; Provisional	99.01
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	98.99
PRK00624	114	glycine cleavage system protein H; Provisional	98.95
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	98.85
PRK01202	127	glycine cleavage system protein H; Provisional	98.82
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	98.73
KOG0369|consensus	1176		98.68
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	98.67
PRK09783	409	copper/silver efflux system membrane fusion protei	98.4
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	98.39
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	98.39
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	98.36
KOG0238|consensus	670		98.36
PRK09859	385	multidrug efflux system protein MdtE; Provisional	98.35
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	98.35
KOG0368|consensus	2196		98.27
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	98.15
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	98.13
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	98.12
PRK11578	370	macrolide transporter subunit MacA; Provisional	98.08
PRK10476	346	multidrug resistance protein MdtN; Provisional	98.06
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	98.03
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.87
KOG3373|consensus	172		97.76
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	97.63
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	97.62
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	97.5
PRK12784	84	hypothetical protein; Provisional	97.36
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	97.35
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	97.33
PRK06748	83	hypothetical protein; Validated	97.3
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	97.27
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	97.23
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	97.2
PRK07051	80	hypothetical protein; Validated	97.2
COG3608	331	Predicted deacylase [General function prediction o	97.18
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	97.15
PF00529	305	HlyD: HlyD family secretion protein the correspond	97.14
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	97.12
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	97.1
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	97.1
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	97.02
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	96.98
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	96.95
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	96.93
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	96.87
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	96.81
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	96.81
PRK15136	390	multidrug efflux system protein EmrA; Provisional	96.77
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	96.7
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	96.66
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	96.61
PRK05035	695	electron transport complex protein RnfC; Provision	96.58
COG4656	529	RnfC Predicted NADH:ubiquinone oxidoreductase, sub	96.58
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	96.52
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	96.46
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	96.24
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.2
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	96.16
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	96.06
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	95.78
PF13437	105	HlyD_3: HlyD family secretion protein	95.65
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	95.64
COG4072	161	Uncharacterized protein conserved in archaea [Func	95.53
COG1566	352	EmrA Multidrug resistance efflux pump [Defense mec	95.51
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	95.46
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	95.44
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	95.39
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	95.35
PF02749	88	QRPTase_N: Quinolinate phosphoribosyl transferase,	95.15
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	94.97
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	94.84
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	94.58
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	94.33
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	93.98
TIGR00830	121	PTBA PTS system, glucose subfamily, IIA component.	93.95
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	93.94
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	93.94
cd00210	124	PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose s	93.75
PRK14042	596	pyruvate carboxylase subunit B; Provisional	93.72
KOG0559|consensus	457		93.39
PRK09282	592	pyruvate carboxylase subunit B; Validated	93.23
PRK09439	169	PTS system glucose-specific transporter subunit; P	93.03
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	93.01
PF13437	105	HlyD_3: HlyD family secretion protein	92.59
PF00358	132	PTS_EIIA_1: phosphoenolpyruvate-dependent sugar ph	92.25
PF04952	292	AstE_AspA: Succinylglutamate desuccinylase / Aspar	91.8
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	91.6
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	91.42
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	91.35
COG2190	156	NagE Phosphotransferase system IIA components [Car	91.32
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	91.31
PRK02597	1331	rpoC2 DNA-directed RNA polymerase subunit beta'; P	91.06
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	90.44
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	90.32
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	89.98
PRK14040	593	oxaloacetate decarboxylase; Provisional	89.96
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.77
PRK12784	84	hypothetical protein; Provisional	89.76
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	89.31
PRK12999	1146	pyruvate carboxylase; Reviewed	89.25
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	89.12
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	88.96
PRK03598	331	putative efflux pump membrane fusion protein; Prov	88.89
PF01551	96	Peptidase_M23: Peptidase family M23; InterPro: IPR	88.73
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	87.77
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	87.73
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	87.73
PRK06096	284	molybdenum transport protein ModD; Provisional	87.56
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	87.54
PRK11578	370	macrolide transporter subunit MacA; Provisional	87.49
TIGR00164	189	PS_decarb_rel phosphatidylserine decarboxylase pre	87.39
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	87.3
PRK05305	206	phosphatidylserine decarboxylase; Provisional	87.19
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	87.01
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	86.98
CHL00117	1364	rpoC2 RNA polymerase beta'' subunit; Reviewed	86.98
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	86.78
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	86.76
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	86.74
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	86.35
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	86.18
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	86.12
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	86.02
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	86.01
PF00529	305	HlyD: HlyD family secretion protein the correspond	85.94
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	85.69
TIGR01334	277	modD putative molybdenum utilization protein ModD.	85.2
PRK10476	346	multidrug resistance protein MdtN; Provisional	85.19
TIGR01995	610	PTS-II-ABC-beta PTS system, beta-glucoside-specifi	85.11
TIGR02643	437	T_phosphoryl thymidine phosphorylase. Thymidine ph	84.83
PRK05820	440	deoA thymidine phosphorylase; Reviewed	84.6
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	84.17
PRK09824	627	PTS system beta-glucoside-specific transporter sub	83.99
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	83.95
PRK09783	409	copper/silver efflux system membrane fusion protei	83.79
PRK15136	390	multidrug efflux system protein EmrA; Provisional	83.78
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	83.77
TIGR02645	493	ARCH_P_rylase putative thymidine phosphorylase. Me	83.72
TIGR02644	405	Y_phosphoryl pyrimidine-nucleoside phosphorylase.	83.48
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	83.3
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	83.01
PRK06078	434	pyrimidine-nucleoside phosphorylase; Reviewed	82.97
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	82.68
TIGR02876	382	spore_yqfD sporulation protein YqfD. YqfD is part	82.55
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	82.46
PRK09859	385	multidrug efflux system protein MdtE; Provisional	82.23
PRK10255	648	PTS system N-acetyl glucosamine specific transport	81.79
TIGR02388	1227	rpoC2_cyan DNA-directed RNA polymerase, beta'' sub	81.2
PRK10871	319	nlpD lipoprotein NlpD; Provisional	80.96
PRK04350	490	thymidine phosphorylase; Provisional	80.31

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.79  E-value=3.3e-19  Score=96.35  Aligned_cols=62  Identities=48%  Similarity=0.686  Sum_probs=58.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++....++++.+|++++|+.|++||+|+.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus         5 ~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~   66 (74)
T PF00364_consen    5 APMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VE   66 (74)
T ss_dssp             ESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EE
T ss_pred             CCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-EC
Confidence            588888888899999999999999999999999999999999999999999999999984 64

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.79  E-value=7.5e-19  Score=118.98  Aligned_cols=63  Identities=60%  Similarity=0.878  Sum_probs=61.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|++||++|++.+|.||.+|+|.++++++|++ |+|
T Consensus         7 mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~V   69 (404)
T COG0508           7 MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPV   69 (404)
T ss_pred             cCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcC
Confidence            799999999999999999999999999999999999999999999999999999999995 875

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.77  E-value=3.4e-18  Score=111.10  Aligned_cols=63  Identities=37%  Similarity=0.587  Sum_probs=60.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++++|+|++|++++||.|++||.|+++|+||+..+|+||.+|+|.++.+++|+ .|.+
T Consensus         7 ~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~   69 (371)
T PRK14875          7 MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPV   69 (371)
T ss_pred             CCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCC
Confidence            79999999999999999999999999999999999999999999999999999999998 4653

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.74  E-value=1.5e-17  Score=114.26  Aligned_cols=63  Identities=27%  Similarity=0.579  Sum_probs=60.5

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|++||+||+..+|.||++|+|.++++++|+ .|++
T Consensus        96 mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd-~V~v  158 (463)
T PLN02226         96 VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD-TVEP  158 (463)
T ss_pred             cCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC-EecC
Confidence            69999999999999999999999999999999999999999999999999999999999 4764

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.74  E-value=1.9e-17  Score=112.66  Aligned_cols=63  Identities=35%  Similarity=0.695  Sum_probs=60.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+ .|++
T Consensus        49 ~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~  111 (418)
T PTZ00144         49 VPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEV  111 (418)
T ss_pred             cCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecC
Confidence            79999999999999999999999999999999999999999999999999999999998 4653

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.70  E-value=2.1e-16  Score=84.67  Aligned_cols=54  Identities=20%  Similarity=0.326  Sum_probs=50.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||+|+.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus         9 ~~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~   62 (71)
T PRK05889          9 IVASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQ   62 (71)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-EC
Confidence            4599999999999999999999999999999999999999999999999983 54

>PRK06748 hypothetical protein; Validated

Probab=99.70  E-value=2.4e-16  Score=87.25  Aligned_cols=55  Identities=22%  Similarity=0.208  Sum_probs=51.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec-CceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT-DKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~-~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ..|+|.+|++++||.|++||+|+++|+ +|+..++.||.+|+|.++++++|++ |++
T Consensus        11 ~~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~v   66 (83)
T PRK06748         11 CYGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IAD   66 (83)
T ss_pred             CcEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECC
Confidence            469999999999999999999999999 8899999999999999999999994 653

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.70  E-value=1.5e-16  Score=107.92  Aligned_cols=63  Identities=43%  Similarity=0.682  Sum_probs=60.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++.++.+|+|.+|++++||.|++||.|+++|++|+..+|.||.+|+|.++++++|+ .|++
T Consensus         7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~   69 (407)
T PRK05704          7 VPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTV   69 (407)
T ss_pred             cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCC
Confidence            79999999999999999999999999999999999999999999999999999999998 4654

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.69  E-value=4.7e-16  Score=82.98  Aligned_cols=62  Identities=45%  Similarity=0.728  Sum_probs=57.4

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.+..+|++.+|++++|+.|++||.|+.+|++|+..+++||++|+|.+++++.|+. ++
T Consensus         4 ~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~   65 (73)
T cd06663           4 IPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VE   65 (73)
T ss_pred             cCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-EC
Confidence            578888778999999999999999999999999999999999999999999999999973 53

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.68  E-value=2.9e-16  Score=106.46  Aligned_cols=63  Identities=37%  Similarity=0.659  Sum_probs=60.5

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||.|+++|++|+..++.||.+|+|.++++++|+ .|++
T Consensus         5 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~v   67 (403)
T TIGR01347         5 VPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVES   67 (403)
T ss_pred             cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCC
Confidence            79999999999999999999999999999999999999999999999999999999998 4764

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>KOG0557|consensus

Probab=99.66  E-value=2.2e-16  Score=107.99  Aligned_cols=64  Identities=58%  Similarity=0.929  Sum_probs=62.5

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||.++.+|++|.|++|..++||.+.+||.||+||++|+++++.+..+|++-+|++.+|.++|+|
T Consensus        43 MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpV  106 (470)
T KOG0557|consen   43 MPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPV  106 (470)
T ss_pred             cCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccC
Confidence            8999999999999999999999999999999999999999999999999999999999888986

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.65  E-value=8.4e-16  Score=107.98  Aligned_cols=63  Identities=35%  Similarity=0.582  Sum_probs=60.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++.++.+|+|.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus       140 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~v  202 (590)
T TIGR02927       140 MPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDV  202 (590)
T ss_pred             cCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecC
Confidence            79999999999999999999999999999999999999999999999999999999998 4764

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.61  E-value=2.2e-15  Score=89.96  Aligned_cols=55  Identities=27%  Similarity=0.361  Sum_probs=51.4

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      -..|++.+.+|++||+|++||.||+||+||+..+|.||.+|+|.++++++|+ .|.
T Consensus        76 Pm~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve  130 (140)
T COG0511          76 PMVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVE  130 (140)
T ss_pred             CcceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccC
Confidence            3469999999999999999999999999999999999999999999999999 353

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.59  E-value=5.4e-15  Score=103.20  Aligned_cols=62  Identities=23%  Similarity=0.392  Sum_probs=59.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++. +.+|+|.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus       121 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~v  182 (546)
T TIGR01348       121 VPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPT  182 (546)
T ss_pred             CCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecC
Confidence            799998 9999999999999999999999999999999999999999999999999998 4764

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.59  E-value=5.4e-15  Score=104.47  Aligned_cols=61  Identities=25%  Similarity=0.304  Sum_probs=57.9

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++  +.+|+|.+|++++||.|++||.|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus       211 ~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~  271 (633)
T PRK11854        211 VPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKT  271 (633)
T ss_pred             cCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecC
Confidence            68899  7899999999999999999999999999999999999999999999999998 4764

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.59  E-value=1.6e-14  Score=76.94  Aligned_cols=54  Identities=28%  Similarity=0.346  Sum_probs=50.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++|+.|++||+|+.+|++|+..++.||.+|+|.++++++|+. |.
T Consensus         8 ~~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~   61 (70)
T PRK08225          8 MAGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VN   61 (70)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-EC
Confidence            4599999999999999999999999999999999999999999999999984 53

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.59  E-value=7e-15  Score=102.65  Aligned_cols=64  Identities=63%  Similarity=1.007  Sum_probs=60.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++.++.+|+|.+|++++||.|++||.|+++|++|+..++.||.+|+|.++++++|+..|+|
T Consensus       117 mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~v  180 (539)
T PLN02744        117 MPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKV  180 (539)
T ss_pred             CCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCC
Confidence            6999999999999999999999999999999999999999999999999999999999634654

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=99.59  E-value=1.4e-14  Score=98.51  Aligned_cols=63  Identities=30%  Similarity=0.497  Sum_probs=59.8

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|+++|++|+..++.||.+|+|.++++++|+ .+++
T Consensus         3 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~v   65 (416)
T PLN02528          3 LAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKV   65 (416)
T ss_pred             CCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCC
Confidence            69999999999999999999999999999999999999999999999999999999998 4653

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.57  E-value=1.2e-14  Score=101.33  Aligned_cols=62  Identities=31%  Similarity=0.529  Sum_probs=58.9

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++. +.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+ .|++
T Consensus       124 ~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~  185 (547)
T PRK11855        124 VPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSV  185 (547)
T ss_pred             cCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecC
Confidence            699999 9999999999999999999999999999999999999999999999999998 4653

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.54  E-value=5.3e-14  Score=83.39  Aligned_cols=54  Identities=24%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||.|+.+|+||+..+|.||++|+|.++++++|+. |.
T Consensus        68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~  121 (130)
T PRK06549         68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VN  121 (130)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eC
Confidence            4699999999999999999999999999999999999999999999999984 53

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.53  E-value=7.5e-14  Score=94.34  Aligned_cols=62  Identities=45%  Similarity=0.693  Sum_probs=59.4

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++.++.+|+|.+|++++|+.|.+||.|+++|++|+..++.||++|+|.++++++|+. |+
T Consensus         7 ~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~   68 (411)
T PRK11856          7 MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VP   68 (411)
T ss_pred             cCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eC
Confidence            699999999999999999999999999999999999999999999999999999999983 54

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.53  E-value=6.6e-14  Score=99.02  Aligned_cols=60  Identities=25%  Similarity=0.383  Sum_probs=57.1

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++  +.+|+|.+|++++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+ .|.
T Consensus         7 ~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~   66 (633)
T PRK11854          7 VPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVE   66 (633)
T ss_pred             eCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEe
Confidence            68999  8899999999999999999999999999999999999999999999999998 465

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.52  E-value=6.9e-14  Score=95.61  Aligned_cols=63  Identities=70%  Similarity=1.068  Sum_probs=59.6

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++.++.+|+|.+|++++||.|+.||.|+++|++|+..++.||.+|++.++++++|+..|+
T Consensus         4 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~   66 (435)
T TIGR01349         4 MPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVP   66 (435)
T ss_pred             cCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEec
Confidence            799999999999999999999999999999999999999999999999999999999983154

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.51  E-value=1.3e-13  Score=83.63  Aligned_cols=55  Identities=29%  Similarity=0.395  Sum_probs=51.3

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      -..|+|.+|++++||.|++||.|+.+|+||+..+|.||.+|+|.+++++.|+. |.
T Consensus        90 p~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~  144 (153)
T PRK05641         90 PMPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VD  144 (153)
T ss_pred             CCCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-EC
Confidence            34699999999999999999999999999999999999999999999999983 53

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.51  E-value=1e-13  Score=95.45  Aligned_cols=64  Identities=66%  Similarity=0.992  Sum_probs=60.0

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||.++.++++|+|.+|++++||.|++||.|+++|++|++.++.||.+|++.++++++|+..|++
T Consensus         7 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~v   70 (464)
T PRK11892          7 MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKV   70 (464)
T ss_pred             cCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCC
Confidence            6999999999999999999999999999999999999999999999999999999999634653

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.48  E-value=2e-13  Score=96.07  Aligned_cols=62  Identities=37%  Similarity=0.616  Sum_probs=59.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++.++.+|+|.+|++++||.|+.||.|+++|++|+..++.||.+|+|.++++++|+ .|+
T Consensus         7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd-~v~   68 (590)
T TIGR02927         7 MPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDD-TVD   68 (590)
T ss_pred             CCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCC-EEe
Confidence            69999999999999999999999999999999999999999999999999999999998 454

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.48  E-value=8e-13  Score=68.49  Aligned_cols=51  Identities=35%  Similarity=0.479  Sum_probs=48.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      ..|++.+|+++.|+.|++||.|+.+++++...+++||.+|+|..+++..|+
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~   56 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD   56 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC
Confidence            469999999999999999999999999999999999999999999999887

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>KOG0559|consensus

Probab=99.46  E-value=1.7e-14  Score=97.09  Aligned_cols=62  Identities=32%  Similarity=0.665  Sum_probs=59.6

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.+++++.+|.|.+|+++.||.|++++.+++||++|.+.+|.||.+|+|.++++++|++ |.
T Consensus        77 vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~  138 (457)
T KOG0559|consen   77 VPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VT  138 (457)
T ss_pred             cCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-cc
Confidence            589999999999999999999999999999999999999999999999999999999994 64

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.45  E-value=7.8e-13  Score=92.27  Aligned_cols=61  Identities=31%  Similarity=0.554  Sum_probs=57.8

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++. +.+|+|.+|++++||.|++||.|+++|++|+...+.||.+|+|.++++++|+. |.
T Consensus         7 ~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~   67 (547)
T PRK11855          7 VPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VS   67 (547)
T ss_pred             cCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ec
Confidence            589999 99999999999999999999999999999999999999999999999999983 53

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.40  E-value=1.5e-12  Score=91.95  Aligned_cols=54  Identities=22%  Similarity=0.354  Sum_probs=51.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus       532 m~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~  585 (596)
T PRK14042        532 IPGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VT  585 (596)
T ss_pred             cceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-EC
Confidence            3699999999999999999999999999999999999999999999999984 64

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.40  E-value=2.1e-12  Score=90.29  Aligned_cols=61  Identities=30%  Similarity=0.492  Sum_probs=57.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++.. .+|+|.+|++++||.|++||.|+++|++|+...|.|+.+|+|.++++++|+ .|.
T Consensus         5 ~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd-~V~   65 (546)
T TIGR01348         5 VPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGD-TLP   65 (546)
T ss_pred             cCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCC-EEe
Confidence            6899976 889999999999999999999999999999999999999999999999998 354

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK07051 hypothetical protein; Validated

Probab=99.40  E-value=3.4e-12  Score=69.76  Aligned_cols=54  Identities=31%  Similarity=0.393  Sum_probs=50.2

Q ss_pred             CeEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|++.+       |++++|+.|++||.++.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus        10 ~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~   70 (80)
T PRK07051         10 LPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VE   70 (80)
T ss_pred             CceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-EC
Confidence            4588989       999999999999999999999999999999999999999999983 53

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=99.38  E-value=2.6e-12  Score=90.54  Aligned_cols=55  Identities=29%  Similarity=0.360  Sum_probs=51.7

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ...|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus       523 p~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~  577 (582)
T TIGR01108       523 PIAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VS  577 (582)
T ss_pred             CccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eC
Confidence            34699999999999999999999999999999999999999999999999984 64

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.38  E-value=2e-12  Score=78.49  Aligned_cols=53  Identities=26%  Similarity=0.421  Sum_probs=49.0

Q ss_pred             eEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         10 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        10 ~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .|++.+       |++++||.|++||.||.||+||+..+|.||.+|+|.+++++.|+ .|.
T Consensus        88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~  147 (156)
T TIGR00531        88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVE  147 (156)
T ss_pred             CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EEC
Confidence            477776       99999999999999999999999999999999999999999998 353

The gene name is accB or fabE.

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.38  E-value=2.4e-12  Score=83.62  Aligned_cols=53  Identities=28%  Similarity=0.473  Sum_probs=49.7

Q ss_pred             eEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         10 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        10 ~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .|++.+       |++++||.|++||.|+.||+||+..+|+||.+|+|.++++++|+ .|.
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~  264 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVS  264 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeC
Confidence            588888       99999999999999999999999999999999999999999998 354

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.35  E-value=2.7e-11  Score=62.17  Aligned_cols=60  Identities=60%  Similarity=0.928  Sum_probs=56.4

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      +|+++.+..+|++.+|++..|+.+..|+.++.++++++...+.+|.+|++.+.+..+|+.
T Consensus         5 ~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~   64 (74)
T cd06849           5 MPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT   64 (74)
T ss_pred             CCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE
Confidence            578888889999999999999999999999999999999999999999999999988873

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.35  E-value=5.9e-12  Score=76.32  Aligned_cols=53  Identities=28%  Similarity=0.487  Sum_probs=48.5

Q ss_pred             eEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         10 EGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        10 ~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      -|++..       |+++.||.|++||.||.+|+||+..+|+||.+|+|.+++++.|+ .|.
T Consensus        87 ~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~  146 (155)
T PRK06302         87 VGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVE  146 (155)
T ss_pred             CEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeC
Confidence            467665       99999999999999999999999999999999999999999998 353

>TIGR02712 urea_carbox urea carboxylase

Probab=99.33  E-value=7.4e-12  Score=93.51  Aligned_cols=54  Identities=26%  Similarity=0.295  Sum_probs=51.2

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus      1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~ 1192 (1201)
T TIGR02712      1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VD 1192 (1201)
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eC
Confidence            4699999999999999999999999999999999999999999999999984 64

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=99.30  E-value=1.5e-11  Score=86.92  Aligned_cols=54  Identities=30%  Similarity=0.383  Sum_probs=50.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+. |.
T Consensus       531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~  584 (593)
T PRK14040        531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VA  584 (593)
T ss_pred             ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-EC
Confidence            3699999999999999999999999999999999999999999999999984 54

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=99.29  E-value=1.4e-11  Score=91.81  Aligned_cols=54  Identities=22%  Similarity=0.356  Sum_probs=51.2

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |.
T Consensus      1081 ~~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~ 1134 (1143)
T TIGR01235      1081 MPGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-ID 1134 (1143)
T ss_pred             CCcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-EC
Confidence            4699999999999999999999999999999999999999999999999984 64

This enzyme plays a role in gluconeogensis but not glycolysis.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=99.20  E-value=8.5e-11  Score=83.04  Aligned_cols=54  Identities=31%  Similarity=0.415  Sum_probs=50.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||.|+.+|++|+..+|+||.+|+|.++++++|+. |.
T Consensus       529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~  582 (592)
T PRK09282        529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VN  582 (592)
T ss_pred             CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eC
Confidence            4699999999999999999999999999999999999999999999999983 53

>PRK12999 pyruvate carboxylase; Reviewed

Probab=99.17  E-value=1.2e-10  Score=86.97  Aligned_cols=54  Identities=30%  Similarity=0.444  Sum_probs=50.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||.|+.+|+||+..+|+||.+|+|.++++++|+. |.
T Consensus      1083 m~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~ 1136 (1146)
T PRK12999       1083 MPGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VE 1136 (1146)
T ss_pred             ceEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-EC
Confidence            4699999999999999999999999999999999999999999999999984 53

>KOG0558|consensus

Probab=99.13  E-value=3e-11  Score=81.49  Aligned_cols=58  Identities=33%  Similarity=0.575  Sum_probs=55.4

Q ss_pred             CCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          2 PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         2 p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      .++|+++.+.++.+|+|++||+|.+-|.||++.++|++++|.+.++|.|.+++.+.++
T Consensus        70 sdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd  127 (474)
T KOG0558|consen   70 SDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD  127 (474)
T ss_pred             hhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh
Confidence            5788999999999999999999999999999999999999999999999999988876

>cd06848 GCS_H Glycine cleavage H-protein

Probab=99.12  E-value=2.9e-10  Score=63.85  Aligned_cols=49  Identities=22%  Similarity=0.235  Sum_probs=43.8

Q ss_pred             EEEEE-EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440         11 GTIVK-WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus        11 g~i~~-w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      |+|.. |+++.|+.|++|+.++.||++|+..+++||.+|+|++++.+..+
T Consensus        29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~   78 (96)
T cd06848          29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD   78 (96)
T ss_pred             CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence            66777 66677999999999999999999999999999999999877665

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=99.10  E-value=2.1e-10  Score=80.75  Aligned_cols=54  Identities=30%  Similarity=0.456  Sum_probs=51.0

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .+|+|+.+.|++|++|.+||.|+.+|+|||...|+||.+|+|.++.+.+|+. |.
T Consensus       582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~  635 (645)
T COG4770         582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VA  635 (645)
T ss_pred             CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cc
Confidence            4699999999999999999999999999999999999999999999999994 53

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.10  E-value=1.8e-10  Score=83.84  Aligned_cols=58  Identities=28%  Similarity=0.416  Sum_probs=52.9

Q ss_pred             CCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccc
Q psy10440          3 SLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDG   62 (64)
Q Consensus         3 ~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v   62 (64)
                      +++..| .|.|+++.|..|+.|++||+|+.+|+||++..|.||++|+|.++++..|+. +
T Consensus      1081 higApm-pG~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i 1138 (1149)
T COG1038        1081 HIGAPM-PGVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-I 1138 (1149)
T ss_pred             ccCCCC-CCceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-c
Confidence            345554 599999999999999999999999999999999999999999999999984 5

>PRK13380 glycine cleavage system protein H; Provisional

Probab=99.01  E-value=1e-09  Score=66.05  Aligned_cols=48  Identities=17%  Similarity=0.165  Sum_probs=43.1

Q ss_pred             EEEEEEEcC-CCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440         11 GTIVKWLKK-EGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN   58 (64)
Q Consensus        11 g~i~~w~v~-~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g   58 (64)
                      |.|..+.+. .|++|++||+++.||++|+..+|+||++|+|++++..--
T Consensus        44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~   92 (144)
T PRK13380         44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALE   92 (144)
T ss_pred             CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhh
Confidence            678888776 899999999999999999999999999999999876543

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=98.99  E-value=1.3e-09  Score=63.03  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN   58 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g   58 (64)
                      |.|..+.. +.|+.|++||++++||++|+..+|+||++|+|++++....
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~   78 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE   78 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence            44444443 6699999999999999999999999999999999865443

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK00624 glycine cleavage system protein H; Provisional

Probab=98.95  E-value=3.6e-09  Score=61.56  Aligned_cols=46  Identities=17%  Similarity=0.280  Sum_probs=39.0

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP   56 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~   56 (64)
                      |.|..+.. +.|+.|++||.|++||++|+..+|+||++|+|++++-.
T Consensus        32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~   78 (114)
T PRK00624         32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA   78 (114)
T ss_pred             CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence            44555444 66999999999999999999999999999999998543

>TIGR00527 gcvH glycine cleavage system H protein

Probab=98.85  E-value=7e-09  Score=61.16  Aligned_cols=46  Identities=22%  Similarity=0.280  Sum_probs=38.9

Q ss_pred             EEEEEE-EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440         11 GTIVKW-LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP   56 (64)
Q Consensus        11 g~i~~w-~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~   56 (64)
                      |.|..+ +.+.|++|++||.++.||++|+..+|+||++|+|++++-.
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~   82 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA   82 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence            444444 3467999999999999999999999999999999998644

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK01202 glycine cleavage system protein H; Provisional

Probab=98.82  E-value=1.2e-08  Score=60.22  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=39.2

Q ss_pred             EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCC
Q psy10440         11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE   57 (64)
Q Consensus        11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~   57 (64)
                      |.|..+. .+.|++|++||+++.||++|+..+|+||++|+|++++.+.
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l   84 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEAL   84 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHh
Confidence            4444443 3579999999999999999999999999999999985443

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=98.73  E-value=1.8e-08  Score=59.86  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP   56 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~   56 (64)
                      +.+.|+.|++|+.++.||+.|+..+|+||++|+|++++-.
T Consensus        46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~   85 (131)
T COG0509          46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA   85 (131)
T ss_pred             cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence            4678999999999999999999999999999999998643

>KOG0369|consensus

Probab=98.68  E-value=5.4e-08  Score=70.61  Aligned_cols=52  Identities=27%  Similarity=0.376  Sum_probs=49.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+|+++.+.+|+.|++||+|+.+.+||+++-|.||.+|+++++++..|++
T Consensus      1113 MpG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~ 1164 (1176)
T KOG0369|consen 1113 MPGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK 1164 (1176)
T ss_pred             CCCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc
Confidence            3599999999999999999999999999999999999999999999999874

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=98.67  E-value=8.9e-08  Score=56.05  Aligned_cols=45  Identities=27%  Similarity=0.358  Sum_probs=34.5

Q ss_pred             EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      |.|..+. .+.|+.+++|++++.||+.|+..+++||++|+|++++-
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~   76 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE   76 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence            3344433 46699999999999999999999999999999999864

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=98.40  E-value=2.4e-06  Score=58.16  Aligned_cols=52  Identities=17%  Similarity=0.291  Sum_probs=44.8

Q ss_pred             CeEEEEEEE-cCCCCEEcCCCeEEEEecC------------------------------------------------ceE
Q psy10440          9 TEGTIVKWL-KKEGDAVAPGDVLCEIQTD------------------------------------------------KAV   39 (64)
Q Consensus         9 ~~g~i~~w~-v~~G~~V~~g~~l~~ie~~------------------------------------------------k~~   39 (64)
                      ..|.|.+++ +++||.|++||+|++|++.                                                ...
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            469999998 9999999999999999841                                                013


Q ss_pred             EEEecCCCeEEEEEecCCCCc
Q psy10440         40 MSFETEEEGILAKILVPENTT   60 (64)
Q Consensus        40 ~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+||++|+|.++.+.+|+.
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~  230 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMN  230 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCE
Confidence            579999999999999999983

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=98.39  E-value=1.4e-06  Score=58.38  Aligned_cols=27  Identities=30%  Similarity=0.459  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++||.|++||.|+.|++
T Consensus        70 v~G~V~~v~v~~Gd~VkkGq~La~ld~   96 (385)
T PRK09578         70 VAGIVTARTYEEGQEVKQGAVLFRIDP   96 (385)
T ss_pred             CcEEEEEEECCCCCEEcCCCEEEEECC
Confidence            469999999999999999999999976

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=98.39  E-value=1.4e-06  Score=58.81  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|+|.++++++||.|++||.|+.|+.
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~   98 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDP   98 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECC
Confidence            469999999999999999999999986

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=98.36  E-value=2e-06  Score=56.60  Aligned_cols=27  Identities=26%  Similarity=0.352  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.++++++||.|++||+|+.+++
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~   80 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQ   80 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECc
Confidence            469999999999999999999999987

>KOG0238|consensus

Probab=98.36  E-value=2.9e-07  Score=64.93  Aligned_cols=52  Identities=27%  Similarity=0.332  Sum_probs=49.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|.|.+++++.||.|.+||.++.+++||+...++||.+|++..+.++.|++
T Consensus       608 MpG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~  659 (670)
T KOG0238|consen  608 MPGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT  659 (670)
T ss_pred             CCCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc
Confidence            3589999999999999999999999999999999999999999999999984

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=98.35  E-value=1.6e-06  Score=58.22  Aligned_cols=27  Identities=41%  Similarity=0.537  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.|++||.|+.|++
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~   94 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDP   94 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECc
Confidence            469999999999999999999999986

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=98.35  E-value=1.3e-06  Score=43.85  Aligned_cols=29  Identities=31%  Similarity=0.465  Sum_probs=26.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ..|+|.+|++++|+.|++||+|+.+++..
T Consensus         9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD   37 (50)
T ss_pred             CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence            46999999999999999999999998743

>KOG0368|consensus

Probab=98.27  E-value=1.7e-06  Score=66.56  Aligned_cols=53  Identities=25%  Similarity=0.496  Sum_probs=49.5

Q ss_pred             CCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          6 PTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         6 ~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      .+...|++++|+|+.|+.|.+||.-+++|.||+.+++.|+.+|+| +...++|+
T Consensus       689 rsPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~  741 (2196)
T KOG0368|consen  689 RSPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGD  741 (2196)
T ss_pred             cCCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCC
Confidence            455689999999999999999999999999999999999999999 78888887

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=98.15  E-value=1.1e-05  Score=52.79  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.++++++|+.|++||+|+.+++
T Consensus        49 ~~G~V~~i~v~~G~~V~kGq~L~~ld~   75 (334)
T TIGR00998        49 VSGSVIEVNVDDTDYVKQGDVLVRLDP   75 (334)
T ss_pred             CceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            469999999999999999999999976

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=98.13  E-value=7.8e-06  Score=52.65  Aligned_cols=27  Identities=33%  Similarity=0.539  Sum_probs=25.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.|++||+|+.+++
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~   59 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDD   59 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECC
Confidence            469999999999999999999999975

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=98.12  E-value=8.6e-06  Score=55.48  Aligned_cols=27  Identities=33%  Similarity=0.609  Sum_probs=25.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.|++||.|+.|++
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~  120 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDP  120 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECc
Confidence            469999999999999999999999975

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=98.08  E-value=1.3e-05  Score=53.41  Aligned_cols=27  Identities=22%  Similarity=0.268  Sum_probs=25.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.++++++|+.|++||.|+.+++
T Consensus        68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~   94 (370)
T PRK11578         68 VSGQLKTLSVAIGDKVKKDQLLGVIDP   94 (370)
T ss_pred             cceEEEEEEcCCCCEEcCCCEEEEECc
Confidence            469999999999999999999999986

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=98.06  E-value=1.9e-05  Score=52.31  Aligned_cols=27  Identities=37%  Similarity=0.521  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.++++++|+.|++||+|+.|++
T Consensus        55 v~G~V~~v~V~~G~~VkkGq~L~~ld~   81 (346)
T PRK10476         55 VGGRIVELAVTENQAVKKGDLLFRIDP   81 (346)
T ss_pred             CceEEEEEEeCCCCEEcCCCEEEEECc
Confidence            459999999999999999999999987

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=98.03  E-value=2.1e-05  Score=44.87  Aligned_cols=44  Identities=20%  Similarity=0.258  Sum_probs=37.0

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      |.-.+-.|+.||.|++||.|+.-+. -....|.||.+|+|+.+.-
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~   82 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK   82 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence            3345678999999999999999875 4578999999999998753

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.87  E-value=4.5e-05  Score=50.18  Aligned_cols=27  Identities=37%  Similarity=0.580  Sum_probs=25.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++||.|++||+|+.+++
T Consensus        50 ~~G~V~~i~v~~Gd~V~kG~~L~~ld~   76 (331)
T PRK03598         50 VGGRLASLAVDEGDAVKAGQVLGELDA   76 (331)
T ss_pred             cCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence            469999999999999999999999974

>KOG3373|consensus

Probab=97.76  E-value=1.9e-05  Score=48.52  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=38.8

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      +.+.|..|.+||.++.+|+-|+..+|++|++|+|++++.+-.+
T Consensus        87 LPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~E  129 (172)
T KOG3373|consen   87 LPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEE  129 (172)
T ss_pred             cCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccccc
Confidence            5588999999999999999999999999999999999865444

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=97.63  E-value=0.00015  Score=38.09  Aligned_cols=27  Identities=48%  Similarity=0.597  Sum_probs=24.9

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..+|+|.+|+++.|+.|..||+|+.||
T Consensus        44 ~~~G~v~~~~~~~G~~V~~g~~l~~ie   70 (70)
T PRK08225         44 EEAGTVKKINVQEGDFVNEGDVLLEIE   70 (70)
T ss_pred             CCCEEEEEEEecCCCEECCCCEEEEEC
Confidence            357999999999999999999999986

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=97.62  E-value=0.00033  Score=45.78  Aligned_cols=40  Identities=25%  Similarity=0.485  Sum_probs=33.6

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~   54 (64)
                      .|.+ +..++.|+.|++||.|+.+++    .+|+||++|+|..+.
T Consensus       172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli  211 (256)
T TIGR03309       172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI  211 (256)
T ss_pred             CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence            3554 449999999999999999976    699999999996653

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=97.50  E-value=0.00033  Score=45.78  Aligned_cols=47  Identities=32%  Similarity=0.372  Sum_probs=37.2

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE   57 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~   57 (64)
                      .|-.-+..|++||+|++||+|+.-... ....+.||.+|+|.+++.-+
T Consensus        37 ~g~~Pkm~VkeGD~Vk~Gq~LF~dK~~-p~v~ftsPvsG~V~~I~RG~   83 (257)
T PF05896_consen   37 PGMKPKMLVKEGDRVKAGQPLFEDKKN-PGVKFTSPVSGTVKAINRGE   83 (257)
T ss_pred             CCCCccEEeccCCEEeCCCeeEeeCCC-CCcEEecCCCeEEEEEecCC
Confidence            344578899999999999999983222 35679999999999987644

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>PRK12784 hypothetical protein; Provisional

Probab=97.36  E-value=0.0011  Score=36.37  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=46.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCce-EEEEecCCCeEEEEEecCCCCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA-VMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~-~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      -.|++.++++.+++.|-+.+.|+.|+++.. ...|.--++|.|..+.+.+|+.
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~   64 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ   64 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce
Confidence            469999999999999999999999998654 5568999999999999999984

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=97.35  E-value=0.00067  Score=47.22  Aligned_cols=47  Identities=23%  Similarity=0.268  Sum_probs=38.3

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN   58 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g   58 (64)
                      |.-.+..|++||+|++||.|++-... ....+.||.+|+|+.+....|
T Consensus        38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~~~g   84 (447)
T TIGR01936        38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINRGAK   84 (447)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEecCCC
Confidence            44567899999999999999986543 478999999999999854333

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=97.33  E-value=0.00067  Score=41.26  Aligned_cols=49  Identities=29%  Similarity=0.289  Sum_probs=35.7

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCceE-EEEecCCCeEEEEEecCCC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-MSFETEEEGILAKILVPEN   58 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~-~~i~ap~~G~i~~~~~~~g   58 (64)
                      +|..+-..+.+|+.|.+||.++-+-|.|.. ..++||.+|+|+-+.--++
T Consensus        88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~  137 (150)
T PF09891_consen   88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW  137 (150)
T ss_dssp             ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred             cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence            466677889999999999999999999985 4699999999987764443

; PDB: 3D4R_D.

>PRK06748 hypothetical protein; Validated

Probab=97.30  E-value=0.00089  Score=37.03  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.++++++||.|..|+.|+.|+.+.
T Consensus        48 p~~G~v~~i~v~~Gd~V~vG~~la~I~~~~   77 (83)
T PRK06748         48 GISGYIESLEVVEGQAIADQKLLITVRDDL   77 (83)
T ss_pred             CCCEEEEEEEeCCCCEECCCCEEEEEECCe
Confidence            357999999999999999999999998653

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.27  E-value=0.0024  Score=42.30  Aligned_cols=51  Identities=22%  Similarity=0.294  Sum_probs=41.3

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC----ceEEEEecCCCeEEEEEe----cCCCCc
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKIL----VPENTT   60 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~----k~~~~i~ap~~G~i~~~~----~~~g~~   60 (64)
                      .+-+....++.|+.|++||.|++|-.-    ....+++||.+|+|....    +.+|+.
T Consensus       251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~~v~~G~~  309 (316)
T cd06252         251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPGLVRRGDC  309 (316)
T ss_pred             CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCCccCCCCE
Confidence            355778889999999999999998553    346789999999999876    555763

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.23  E-value=0.0025  Score=41.66  Aligned_cols=44  Identities=25%  Similarity=0.354  Sum_probs=35.6

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecC--ceEEEEecCCCeEEEEEe
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKIL   54 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~--k~~~~i~ap~~G~i~~~~   54 (64)
                      +-+.+..++.|+.|++||.|+.+-..  ....+++||.+|+|..+.
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~  272 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN  272 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec
Confidence            34566799999999999999999652  335789999999997654

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=97.20  E-value=0.00092  Score=46.52  Aligned_cols=44  Identities=30%  Similarity=0.345  Sum_probs=36.3

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      |.-.+..|++||+|++||.|+.-... ....+.||.+|+|+.+..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            44456789999999999999975543 478999999999999953

>PRK07051 hypothetical protein; Validated

Probab=97.20  E-value=0.0012  Score=35.69  Aligned_cols=27  Identities=33%  Similarity=0.708  Sum_probs=24.8

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..+|+|.+|++++|+.|+.||.|+.++
T Consensus        53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~   79 (80)
T PRK07051         53 EAAGRVVEFLVEDGEPVEAGQVLARIE   79 (80)
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence            357999999999999999999999985

>COG3608 Predicted deacylase [General function prediction only]

Probab=97.18  E-value=0.0013  Score=44.31  Aligned_cols=50  Identities=28%  Similarity=0.431  Sum_probs=42.4

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC---ceEEEEecCCCeEEEEEe----cCCCC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD---KAVMSFETEEEGILAKIL----VPENT   59 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~---k~~~~i~ap~~G~i~~~~----~~~g~   59 (64)
                      .+-+++..++.||.|++||.|+.+-..   +...+|+|+.+|+|..++    +++|+
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~~v~~Gd  319 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLRLVQPGD  319 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeeccccCCCC
Confidence            466899999999999999999999664   678899999999998763    55554

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=97.15  E-value=0.00061  Score=44.61  Aligned_cols=26  Identities=42%  Similarity=0.620  Sum_probs=24.9

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      |+|.+++|++||.|++||+|+.|+..
T Consensus        25 G~V~~i~V~eG~~V~~G~~L~~ld~~   50 (327)
T TIGR02971        25 DRIKKLLVAEGDRVQAGQVLAELDSR   50 (327)
T ss_pred             cEEEEEEccCCCEecCCcEEEEecCc
Confidence            99999999999999999999999874

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=97.14  E-value=0.00047  Score=44.08  Aligned_cols=27  Identities=33%  Similarity=0.565  Sum_probs=20.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.+++|++|+.|++||+|+.|+.
T Consensus         8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~   34 (305)
T PF00529_consen    8 VGGIVTEILVKEGQRVKKGQVLARLDP   34 (305)
T ss_dssp             S-EEEEEE-S-TTEEE-TTSECEEE--
T ss_pred             CCeEEEEEEccCcCEEeCCCEEEEEEe
Confidence            469999999999999999999999985

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=97.12  E-value=0.00095  Score=46.03  Aligned_cols=40  Identities=18%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~   54 (64)
                      .+-.|++||+|+.||.|+..+. .....+.||.+|+|+++.
T Consensus        43 ~~~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        43 AEPIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CceeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEec
Confidence            4678999999999999999743 347899999999999985

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=97.10  E-value=0.0037  Score=41.23  Aligned_cols=45  Identities=29%  Similarity=0.324  Sum_probs=37.4

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec---CceEEEEecCCCeEEEEEe
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT---DKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~---~k~~~~i~ap~~G~i~~~~   54 (64)
                      .+-+....++.|+.|++||.|++|-.   .....+++||.+|+|..+.
T Consensus       236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~  283 (298)
T cd06253         236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR  283 (298)
T ss_pred             CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee
Confidence            35567788999999999999999954   3347789999999998764

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=97.10  E-value=0.0018  Score=40.93  Aligned_cols=21  Identities=10%  Similarity=0.127  Sum_probs=18.4

Q ss_pred             EEEecCCCeEEEEEecCCCCc
Q psy10440         40 MSFETEEEGILAKILVPENTT   60 (64)
Q Consensus        40 ~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+||++|+|..+++.+|+.
T Consensus        89 ~~i~AP~dG~V~~~~~~~G~~  109 (265)
T TIGR00999        89 VEVRSPFDGYITQKSVTLGDY  109 (265)
T ss_pred             EEEECCCCeEEEEEEcCCCCE
Confidence            358999999999999999873

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=97.02  E-value=0.0037  Score=42.28  Aligned_cols=45  Identities=29%  Similarity=0.423  Sum_probs=35.9

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEEe
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~~   54 (64)
                      .+-+....++.|+.|++||.|++|-+    ......|+||.+|+|..++
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~  344 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA  344 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec
Confidence            46678889999999999999999943    2233346999999998764

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.98  E-value=0.006  Score=39.88  Aligned_cols=46  Identities=15%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec--CceEEEEecCCCeEEEEEec
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT--DKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~--~k~~~~i~ap~~G~i~~~~~   55 (64)
                      .+-+.+.+++.|+.|++||.|+.+-.  .....+++||.+|.|..+..
T Consensus       230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~  277 (288)
T cd06254         230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTA  277 (288)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeC
Confidence            35677888999999999999999943  23467899999999988653

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=96.95  E-value=0.0025  Score=33.59  Aligned_cols=27  Identities=30%  Similarity=0.464  Sum_probs=24.5

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.++++++|+.|..|+.|+.|+
T Consensus        45 ~~~G~V~~i~v~~G~~V~~G~~l~~i~   71 (71)
T PRK05889         45 EVAGTVSKVSVSVGDVIQAGDLIAVIS   71 (71)
T ss_pred             CCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence            357999999999999999999999874

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=96.93  E-value=0.0065  Score=40.69  Aligned_cols=44  Identities=23%  Similarity=0.499  Sum_probs=36.7

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEEe
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~~   54 (64)
                      +-+....++.|+.|++||.|++|-.    .....+++||.+|+|..++
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~  310 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH  310 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe
Confidence            4566788999999999999999955    2346789999999998864

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=96.87  E-value=0.0018  Score=38.61  Aligned_cols=27  Identities=37%  Similarity=0.549  Sum_probs=25.0

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.+++++.||.|+.||+|+.|+
T Consensus       113 ~~~G~V~~Ilv~~G~~Ve~G~~L~~I~  139 (140)
T COG0511         113 PADGVVKEILVKNGDPVEYGDPLAVIE  139 (140)
T ss_pred             CCCcEEEEEEecCCCccCCCCEEEEec
Confidence            356999999999999999999999987

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=96.81  E-value=0.0018  Score=41.77  Aligned_cols=26  Identities=38%  Similarity=0.601  Sum_probs=20.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+| +|++++|+.|++||+|+.+++
T Consensus        28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~   53 (328)
T PF12700_consen   28 VSGRV-SVNVKEGDKVKKGQVLAELDS   53 (328)
T ss_dssp             S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred             CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence            46999 999999999999999999987

...

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=96.81  E-value=0.0021  Score=34.28  Aligned_cols=25  Identities=44%  Similarity=0.603  Sum_probs=23.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      .+|+|.++++++|+.|..||+|+.|
T Consensus        50 ~~G~i~~i~v~~G~~V~~G~~l~~I   74 (74)
T PF00364_consen   50 VSGIIKEILVEEGDTVEVGQVLAII   74 (74)
T ss_dssp             SSEEEEEESSTTTEEEETTSEEEEE
T ss_pred             CCEEEEEEEECCCCEECCCCEEEEC
Confidence            4699999999999999999999976

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=96.77  E-value=0.0023  Score=43.38  Aligned_cols=27  Identities=30%  Similarity=0.476  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.++++++|+.|++||+|+.|++
T Consensus        68 v~G~V~~v~V~~Gd~VkkGqvL~~LD~   94 (390)
T PRK15136         68 VSGSVTKVWADNTDFVKEGDVLVTLDP   94 (390)
T ss_pred             CCeEEEEEEcCCCCEECCCCEEEEECc
Confidence            469999999999999999999999986

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=96.70  E-value=0.011  Score=38.91  Aligned_cols=44  Identities=20%  Similarity=0.327  Sum_probs=35.9

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC--ceEEEEecCCCeEEEEE
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD--KAVMSFETEEEGILAKI   53 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~--k~~~~i~ap~~G~i~~~   53 (64)
                      .+-+.+..++.|+.|++||.|+.|-.-  ....+++||.+|+|..+
T Consensus       238 ~~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         238 HGGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            355778889999999999999999542  22557899999999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=96.66  E-value=0.004  Score=30.96  Aligned_cols=24  Identities=17%  Similarity=0.281  Sum_probs=20.9

Q ss_pred             EEEEecCCCeEEEEEecCCCCcccc
Q psy10440         39 VMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        39 ~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ...|.||.+|+|.++++.+|+. |.
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~-Vk   25 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQ-VK   25 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCE-Ec
Confidence            4679999999999999999994 63

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=96.61  E-value=0.0039  Score=42.92  Aligned_cols=41  Identities=29%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440         15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP   56 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~   56 (64)
                      ...|++||.|++||+|++-.-. ...-+.||.+|+|+.++..
T Consensus        42 ~mkV~~gD~VkkGq~LfEdKkn-pgv~~Tap~sG~V~aI~RG   82 (447)
T COG1726          42 SMKVREGDAVKKGQVLFEDKKN-PGVVFTAPVSGKVTAIHRG   82 (447)
T ss_pred             cceeccCCeeeccceeeecccC-CCeEEeccCCceEEEeecc
Confidence            4578999999999999983321 3567999999999998743

>PRK05035 electron transport complex protein RnfC; Provisional

Probab=96.58  E-value=0.0047  Score=45.14  Aligned_cols=43  Identities=21%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~   54 (64)
                      |.-.+..|++||+|.+||.|+.-.. -....+.||.+|+|..+.
T Consensus        46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~   88 (695)
T PRK05035         46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE   88 (695)
T ss_pred             CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence            3345678999999999999997543 247899999999999885

>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]

Probab=96.58  E-value=0.0031  Score=44.74  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~   54 (64)
                      ...+|++||+|.+||.|..=+.  ....+.||.+|+|.++.
T Consensus        45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~   83 (529)
T COG4656          45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE   83 (529)
T ss_pred             cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence            4678999999999999998776  78899999999999987

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=96.52  E-value=0.0043  Score=41.38  Aligned_cols=30  Identities=33%  Similarity=0.574  Sum_probs=27.0

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCce
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA   38 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~   38 (64)
                      ..|.|.+++|++||.|++||+|+.++....
T Consensus        50 ~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~   79 (423)
T TIGR01843        50 EGGIVREILVREGDRVKAGQVLVELDATDV   79 (423)
T ss_pred             CCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence            469999999999999999999999987543

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=96.46  E-value=0.006  Score=41.53  Aligned_cols=29  Identities=21%  Similarity=0.341  Sum_probs=26.4

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|.|.++++++|+.|++||+|+.|++.
T Consensus        64 ~~~G~V~~i~V~eG~~V~kGq~L~~l~~~   92 (421)
T TIGR03794        64 PGSGVVIDLDVEVGDQVKKGQVVARLFQP   92 (421)
T ss_pred             CCCeEEEEEECCCcCEECCCCEEEEECcH
Confidence            35699999999999999999999999874

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=96.24  E-value=0.0078  Score=41.49  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|.|.+++|++||.|++||+|+.++..
T Consensus        65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~   93 (457)
T TIGR01000        65 TSNNAIKENYLKENKFVKKGDLLVVYDNG   93 (457)
T ss_pred             CCCcEEEEEEcCCCCEecCCCEEEEECch
Confidence            34699999999999999999999999863

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.20  E-value=0.011  Score=35.10  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=23.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ..|+|.+|+++.||.|..||.|+.|
T Consensus       105 ~~G~V~~i~v~~Gd~V~~G~~L~~I  129 (130)
T PRK06549        105 SAGTVTAIHVTPGQVVNPGDGLITI  129 (130)
T ss_pred             CCeEEEEEEeCCCCEeCCCCEEEEe
Confidence            5699999999999999999999986

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=96.16  E-value=0.011  Score=35.94  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=24.6

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.+|+++.|+.|..||.|+.|+
T Consensus       130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~  156 (156)
T TIGR00531       130 EVAGKVVEILVENGQPVEYGQPLIVIE  156 (156)
T ss_pred             CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence            357999999999999999999999875

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=96.06  E-value=0.013  Score=35.50  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.+|+++.|+.|..||+|+.|+
T Consensus       129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~  155 (155)
T PRK06302        129 DKSGVVTEILVENGQPVEFGQPLFVIE  155 (155)
T ss_pred             CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence            357999999999999999999999874

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=95.78  E-value=0.016  Score=36.95  Aligned_cols=27  Identities=33%  Similarity=0.603  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.++++++||.|++||.|+.+++
T Consensus        73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~   99 (372)
T COG0845          73 VAGIVAEILVKEGDRVKKGQLLARLDP   99 (372)
T ss_pred             cccEEEEEEccCCCeecCCCEEEEECC
Confidence            569999999999999999999999987

>PF13437 HlyD_3: HlyD family secretion protein

Probab=95.65  E-value=0.052  Score=29.93  Aligned_cols=28  Identities=29%  Similarity=0.462  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|.|..+.++.|+.|.+|+.|+.|...
T Consensus         6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~   33 (105)
T PF13437_consen    6 FDGVVVSINVQPGEVVSAGQPLAEIVDT   33 (105)
T ss_pred             CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence            4699999999999999999999999764

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=95.64  E-value=0.033  Score=27.98  Aligned_cols=25  Identities=40%  Similarity=0.623  Sum_probs=22.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ..|.|..++++.|+.|..|+.|+.|
T Consensus        43 ~~G~v~~~~~~~G~~V~~G~~l~~i   67 (67)
T cd06850          43 VAGVVKEILVKEGDQVEAGQLLVVI   67 (67)
T ss_pred             CCEEEEEEEECCCCEECCCCEEEEC
Confidence            4699999999999999999999874

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>COG4072 Uncharacterized protein conserved in archaea [Function unknown]

Probab=95.53  E-value=0.056  Score=32.76  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=39.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEE-EEecCCCeEEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-SFETEEEGILAKIL   54 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~-~i~ap~~G~i~~~~   54 (64)
                      .+|-++---+..|+.+.+||+++-+-+.|... -+.+|.+|+++=+.
T Consensus        98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~  144 (161)
T COG4072          98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID  144 (161)
T ss_pred             cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence            36788888899999999999999999998865 49999999997654

>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]

Probab=95.51  E-value=0.028  Score=38.26  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=25.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|.|.+++++..+.|++||+|+.|+.
T Consensus        60 VsG~V~eV~V~dnq~Vk~Gd~L~~iD~   86 (352)
T COG1566          60 VSGRVTEVNVKDNQLVKKGDVLFRIDP   86 (352)
T ss_pred             CceEEEEEEecCCCEecCCCeEEEECc
Confidence            359999999999999999999999986

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=95.46  E-value=0.031  Score=39.32  Aligned_cols=29  Identities=38%  Similarity=0.617  Sum_probs=26.2

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|+|.+|++++|+.|..|++|+.|+..
T Consensus       140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~  168 (463)
T PLN02226        140 PASGVIQEFLVKEGDTVEPGTKVAIISKS  168 (463)
T ss_pred             CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence            45799999999999999999999999753

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=95.44  E-value=0.04  Score=33.49  Aligned_cols=26  Identities=42%  Similarity=0.629  Sum_probs=23.8

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ...|+|.+++++.|+.|..||.|+.|
T Consensus       127 p~~G~V~~i~v~~Gd~V~~Gq~L~~I  152 (153)
T PRK05641        127 PKDGVVKKILVKEGDTVDTGQPLIEL  152 (153)
T ss_pred             CCCeEEEEEEcCCCCEECCCCEEEEe
Confidence            35799999999999999999999986

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=95.39  E-value=0.031  Score=36.94  Aligned_cols=27  Identities=33%  Similarity=0.446  Sum_probs=24.7

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.+|+++.|+.|..||.|+.|+
T Consensus       247 P~sGtV~eIlVkeGD~V~vGqpL~~IE  273 (274)
T PLN02983        247 DQSGTIVEILAEDGKPVSVDTPLFVIE  273 (274)
T ss_pred             CCCeEEEEEecCCCCEeCCCCEEEEec
Confidence            347999999999999999999999986

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=95.35  E-value=0.031  Score=30.13  Aligned_cols=29  Identities=31%  Similarity=0.400  Sum_probs=21.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +.+.=..++++.||.|++||+|++|-++.
T Consensus        29 D~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   29 DPAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             -TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             CcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            34455788999999999999999996643

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=95.15  E-value=0.03  Score=30.70  Aligned_cols=22  Identities=59%  Similarity=1.103  Sum_probs=18.3

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.+.+|+.|++++.
T Consensus        47 v~~~~~dG~~v~~g~~i~~i~G   68 (88)
T PF02749_consen   47 VEWLVKDGDRVEPGDVILEIEG   68 (88)
T ss_dssp             EEESS-TT-EEETTCEEEEEEE
T ss_pred             EEEEeCCCCCccCCcEEEEEEe
Confidence            5699999999999999999975

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=94.97  E-value=0.068  Score=34.76  Aligned_cols=29  Identities=21%  Similarity=0.480  Sum_probs=26.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ..|+|.++++++|+.|..|+.|+.++...
T Consensus        52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~   80 (371)
T PRK14875         52 AAGTLRRQVAQEGETLPVGALLAVVADAE   80 (371)
T ss_pred             CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence            56999999999999999999999998643

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=94.84  E-value=0.077  Score=27.53  Aligned_cols=25  Identities=40%  Similarity=0.481  Sum_probs=22.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      .+|+|.+++++.|+.+..|+.|+.+
T Consensus        49 ~~G~v~~~~~~~g~~v~~g~~l~~i   73 (73)
T cd06663          49 KSGTVKKVLVKEGTKVEGDTPLVKI   73 (73)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEC
Confidence            4699999999999999999999864

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=94.58  E-value=0.079  Score=36.85  Aligned_cols=29  Identities=41%  Similarity=0.575  Sum_probs=26.3

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|+|.++++++|+.|..|+.|+.|+..
T Consensus        93 p~~G~v~~i~v~~G~~V~~G~~L~~I~~~  121 (418)
T PTZ00144         93 PASGVITKIFAEEGDTVEVGAPLSEIDTG  121 (418)
T ss_pred             CCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence            45799999999999999999999999764

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=94.33  E-value=0.11  Score=35.92  Aligned_cols=30  Identities=33%  Similarity=0.515  Sum_probs=26.9

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.++++++|+.|..|+.|+.|+...
T Consensus        51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (407)
T PRK05704         51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA   80 (407)
T ss_pred             CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            457999999999999999999999998653

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=93.98  E-value=0.14  Score=35.39  Aligned_cols=31  Identities=32%  Similarity=0.545  Sum_probs=27.6

Q ss_pred             CCCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          7 TMTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         7 ~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +...|+|.++++++|++|..|+.|+.|+...
T Consensus        50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~   80 (404)
T COG0508          50 APDAGVLAKILVEEGDTVPVGAVIARIEEEG   80 (404)
T ss_pred             CCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence            3457999999999999999999999998753

>TIGR00830 PTBA PTS system, glucose subfamily, IIA component

Probab=93.95  E-value=0.07  Score=31.32  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=23.6

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +|+-.++++++||+|++||.|+++...
T Consensus        78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~  104 (121)
T TIGR00830        78 NGEGFTSHVEEGQRVKKGDPLLEFDLK  104 (121)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence            466789999999999999999999753

These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=93.94  E-value=0.13  Score=25.34  Aligned_cols=25  Identities=40%  Similarity=0.650  Sum_probs=22.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ..|++.++++..|+.+..|+.|+.+
T Consensus        50 ~~g~v~~~~~~~g~~v~~g~~l~~~   74 (74)
T cd06849          50 AAGVLAKILVEEGDTVPVGQVIAVI   74 (74)
T ss_pred             CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence            3588999999999999999999864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=93.94  E-value=0.14  Score=35.27  Aligned_cols=29  Identities=34%  Similarity=0.559  Sum_probs=26.3

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|+|.++++++|+.|..|+.|+.|+..
T Consensus        49 ~~~G~v~~i~~~eG~~v~vG~~l~~i~~~   77 (403)
T TIGR01347        49 PADGVLQEILFKEGDTVESGQVLAILEEG   77 (403)
T ss_pred             CCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            45799999999999999999999999854

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit

Probab=93.75  E-value=0.085  Score=31.07  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=23.6

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +|+-.++++++||+|++||+|+++...
T Consensus        78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~  104 (124)
T cd00210          78 NGEGFTSHVEEGQRVKQGDKLLEFDLP  104 (124)
T ss_pred             CCCceEEEecCCCEEcCCCEEEEEcHH
Confidence            466789999999999999999998753

The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=93.72  E-value=0.16  Score=36.73  Aligned_cols=28  Identities=32%  Similarity=0.640  Sum_probs=25.6

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ...|+|.++++++|+.|..||.|+.|+.
T Consensus       568 P~~GvV~~i~v~~Gd~V~~G~~L~~I~~  595 (596)
T PRK14042        568 PANGVVAEILCQKGDKVTPGQVLIRVEV  595 (596)
T ss_pred             CCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence            3569999999999999999999999975

>KOG0559|consensus

Probab=93.39  E-value=0.11  Score=36.04  Aligned_cols=29  Identities=38%  Similarity=0.657  Sum_probs=26.4

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      -..|.|.+++|++||+|..|+.|+.|+..
T Consensus       121 P~sGvi~e~lvk~gdtV~~g~~la~i~~g  149 (457)
T KOG0559|consen  121 PASGVITELLVKDGDTVTPGQKLAKISPG  149 (457)
T ss_pred             CCcceeeEEecCCCCcccCCceeEEecCC
Confidence            34699999999999999999999999874

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=93.23  E-value=0.18  Score=36.40  Aligned_cols=27  Identities=56%  Similarity=0.837  Sum_probs=24.8

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.++++++|+.|..||+|+.|+
T Consensus       565 p~~G~V~~i~v~~G~~V~~G~~L~~i~  591 (592)
T PRK09282        565 PVDGTVKEILVKEGDRVNPGDVLMEIE  591 (592)
T ss_pred             CCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence            357999999999999999999999986

>PRK09439 PTS system glucose-specific transporter subunit; Provisional

Probab=93.03  E-value=0.11  Score=32.07  Aligned_cols=26  Identities=31%  Similarity=0.458  Sum_probs=23.4

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +|+-.++++++||+|++||+|+++.-
T Consensus       100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~  125 (169)
T PRK09439        100 KGEGFKRIAEEGQRVKVGDPIIEFDL  125 (169)
T ss_pred             CCCceEEEecCCCEEeCCCEEEEEcH
Confidence            46778999999999999999999975

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=93.01  E-value=0.25  Score=34.17  Aligned_cols=29  Identities=24%  Similarity=0.357  Sum_probs=26.1

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|+|.+|++++|+.+..|+.|+.|+..
T Consensus        47 ~~~G~v~~i~v~~G~~v~vG~~l~~i~~~   75 (416)
T PLN02528         47 RYKGKVAQINFSPGDIVKVGETLLKIMVE   75 (416)
T ss_pred             CCCEEEEEEEeCCCCEeCCCCEEEEEecc
Confidence            45799999999999999999999999754

>PF13437 HlyD_3: HlyD family secretion protein

Probab=92.59  E-value=0.17  Score=27.78  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=17.3

Q ss_pred             EEecCCCeEEEEEecCCCC
Q psy10440         41 SFETEEEGILAKILVPENT   59 (64)
Q Consensus        41 ~i~ap~~G~i~~~~~~~g~   59 (64)
                      .|+||++|+|..+.+.+|+
T Consensus         1 ~i~AP~~G~V~~~~~~~G~   19 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGE   19 (105)
T ss_pred             CEECCCCEEEEEEeCCCCC
Confidence            3899999999999999987

>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria

Probab=92.25  E-value=0.15  Score=30.30  Aligned_cols=28  Identities=39%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +|+-.++++++||+|++||+|+++...+
T Consensus        82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~  109 (132)
T PF00358_consen   82 NGEGFETLVKEGDKVKAGQPLIEFDLEK  109 (132)
T ss_dssp             TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred             CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence            3556889999999999999999997543

The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....

>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3

Probab=91.80  E-value=0.62  Score=30.02  Aligned_cols=44  Identities=32%  Similarity=0.422  Sum_probs=34.2

Q ss_pred             EEEEEEEcCCCCEEcCCCeE--EEEec--CceEEEEecCCCeEEEEEe
Q psy10440         11 GTIVKWLKKEGDAVAPGDVL--CEIQT--DKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l--~~ie~--~k~~~~i~ap~~G~i~~~~   54 (64)
                      +-+....++.|+.|++||.|  ..+-.  .....+++||.+|+|.-++
T Consensus       228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~  275 (292)
T PF04952_consen  228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIR  275 (292)
T ss_dssp             SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESEC
T ss_pred             cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeC
Confidence            44678899999999999999  65532  2345689999999997654

5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....

>TIGR02712 urea_carbox urea carboxylase

Probab=91.60  E-value=0.34  Score=37.60  Aligned_cols=27  Identities=30%  Similarity=0.548  Sum_probs=24.7

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.++++++|+.|..||.|+.||
T Consensus      1175 p~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1175 PVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred             CCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence            357999999999999999999999886

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=91.42  E-value=0.4  Score=37.14  Aligned_cols=52  Identities=10%  Similarity=0.086  Sum_probs=37.9

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|...++.+++++....++.....+... ...|.||.+|.|.++++++|++ |.
T Consensus      1046 NGq~reV~V~D~s~~~~~~~~~KAd~~~-~~~I~a~~~G~v~~~~v~~Gd~-V~ 1097 (1143)
T TIGR01235      1046 NGQPRRIKVPDRSHKAEAAVRRKADPGN-PAHVGAPMPGVIIEVKVSSGQA-VN 1097 (1143)
T ss_pred             CCeEEEEEecCccccccccccccccccc-CceeecCCCcEEEEEEeCCCCE-eC
Confidence            3566777777777766666555444332 4579999999999999999994 64

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=91.35  E-value=0.34  Score=32.23  Aligned_cols=25  Identities=52%  Similarity=0.955  Sum_probs=22.1

Q ss_pred             EEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         12 TIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        12 ~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      .-..|++++|+.+++||.|++++.+
T Consensus        64 i~~~~~~~DG~~v~~g~~i~~~~G~   88 (280)
T COG0157          64 IEIQWLVKDGDRVKPGDVLAEIEGP   88 (280)
T ss_pred             eEEEEEcCCCCEeCCCCEEEEEecc
Confidence            4468999999999999999999863

>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]

Probab=91.32  E-value=0.2  Score=30.76  Aligned_cols=27  Identities=44%  Similarity=0.557  Sum_probs=24.0

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +|+-.+-++++||+|++||.|+++.-+
T Consensus        85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~  111 (156)
T COG2190          85 NGEGFESLVKEGDKVKAGDPLLEFDLD  111 (156)
T ss_pred             CCcceEEEeeCCCEEccCCEEEEECHH
Confidence            477789999999999999999999754

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=91.31  E-value=0.54  Score=32.77  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=25.9

Q ss_pred             CCeEEEEEEEcCCCCE-EcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDA-VAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~-V~~g~~l~~ie~~   36 (64)
                      ...|++.++++++|+. |..|+.|+.|+..
T Consensus        48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~   77 (435)
T TIGR01349        48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEE   77 (435)
T ss_pred             CCCEEEEEEEECCCCEEecCCCEEEEEecc
Confidence            3569999999999999 9999999999653

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional

Probab=91.06  E-value=0.5  Score=37.22  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=31.3

Q ss_pred             EEcCCCCEEcCCCeEEEEecC-------ceEEEEecCCCeEEE
Q psy10440         16 WLKKEGDAVAPGDVLCEIQTD-------KAVMSFETEEEGILA   51 (64)
Q Consensus        16 w~v~~G~~V~~g~~l~~ie~~-------k~~~~i~ap~~G~i~   51 (64)
                      .+|+.|+.|+++|.|+++-+.       |..-.|+|+.+|.|.
T Consensus       405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~  447 (1331)
T PRK02597        405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR  447 (1331)
T ss_pred             EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence            588999999999999999863       456789999999983

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=90.44  E-value=0.91  Score=29.65  Aligned_cols=27  Identities=22%  Similarity=0.490  Sum_probs=24.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|..++++.|+.|..|++|+.|..
T Consensus       211 ~~G~V~~~~~~~G~~v~~g~~l~~i~~  237 (334)
T TIGR00998       211 FDGYVARRFVQVGQVVSPGQPLMAVVP  237 (334)
T ss_pred             CCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence            469999999999999999999999865

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=90.32  E-value=0.69  Score=32.57  Aligned_cols=29  Identities=28%  Similarity=0.376  Sum_probs=25.4

Q ss_pred             CCeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGD-AVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~-~V~~g~~l~~ie~~   36 (64)
                      ...|++.++++++|+ .|+.|++|+.++..
T Consensus        51 ~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~   80 (464)
T PRK11892         51 VDEGTLGKILVPEGTEGVKVNTPIAVLLEE   80 (464)
T ss_pred             CCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence            457999999999996 79999999999653

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=89.98  E-value=0.91  Score=31.08  Aligned_cols=30  Identities=37%  Similarity=0.577  Sum_probs=26.4

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.++++++|+.|..|+.|+.++...
T Consensus        51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~   80 (411)
T PRK11856         51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEG   80 (411)
T ss_pred             CCCeEEEEEecCCCCEeCCCCEEEEEecCC
Confidence            346999999999999999999999997543

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=89.96  E-value=0.69  Score=33.53  Aligned_cols=25  Identities=48%  Similarity=0.606  Sum_probs=23.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ..|+|.++++++|+.|..||.|+.|
T Consensus       568 ~~G~V~~i~v~~Gd~V~~G~~L~~I  592 (593)
T PRK14040        568 QAGTVRGIAVKEGDAVAVGDTLLTL  592 (593)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEe
Confidence            4699999999999999999999986

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.77  E-value=0.59  Score=31.22  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=25.5

Q ss_pred             EEecCceEEEEecCCCeEEEEEecCCCCccc
Q psy10440         32 EIQTDKAVMSFETEEEGILAKILVPENTTDG   62 (64)
Q Consensus        32 ~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v   62 (64)
                      .+........|.||.+|+|.++++.+|+. |
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V   65 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGDR-V   65 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCCE-e
Confidence            55566677789999999999999999994 5

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PRK12784 hypothetical protein; Provisional

Probab=89.76  E-value=0.9  Score=25.04  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=25.7

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +|.|....+++||.|..+-.|+.+|.+-
T Consensus        51 SG~I~~v~Ve~Gq~i~~dtlL~~~edDl   78 (84)
T PRK12784         51 SGNIRLVNVVVGQQIHTDTLLVRLEDDL   78 (84)
T ss_pred             eeeEEEEEeecCceecCCcEEEEEeece
Confidence            5899999999999999999999999764

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=89.31  E-value=0.64  Score=30.42  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=25.9

Q ss_pred             EEEecCceEEEEecCCC---eEEEEEecCCCCcccc
Q psy10440         31 CEIQTDKAVMSFETEEE---GILAKILVPENTTDGK   63 (64)
Q Consensus        31 ~~ie~~k~~~~i~ap~~---G~i~~~~~~~g~~~v~   63 (64)
                      +.++.......|.++.+   |+|.++++++|+. |.
T Consensus         5 G~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~   39 (327)
T TIGR02971         5 GRLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQ   39 (327)
T ss_pred             ceEeecCceEEecCCCCCCCcEEEEEEccCCCE-ec
Confidence            35566555778999999   9999999999994 63

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK12999 pyruvate carboxylase; Reviewed

Probab=89.25  E-value=0.71  Score=35.80  Aligned_cols=26  Identities=42%  Similarity=0.754  Sum_probs=24.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|+|.++++++|+.|..||.|+.||
T Consensus      1120 ~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999       1120 VDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEc
Confidence            46999999999999999999999987

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=89.12  E-value=0.69  Score=30.55  Aligned_cols=22  Identities=36%  Similarity=0.666  Sum_probs=20.8

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.|++|+.|++++.
T Consensus        66 v~~~~~dG~~v~~g~~i~~~~G   87 (277)
T PRK08072         66 VELHKKDGDLVKKGEIIATVQG   87 (277)
T ss_pred             EEEEeCCCCEEcCCCEEEEEEE
Confidence            7899999999999999999986

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=88.96  E-value=0.72  Score=30.18  Aligned_cols=25  Identities=48%  Similarity=0.946  Sum_probs=22.4

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +--.+|++++|+.|++|++|++++.
T Consensus        57 ~l~v~~~~~dG~~v~~g~~i~~i~G   81 (268)
T cd01572          57 GIEVEWLVKDGDRVEPGQVLATVEG   81 (268)
T ss_pred             CeEEEEEeCCCCEecCCCEEEEEEE
Confidence            4457899999999999999999986

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=88.89  E-value=1.5  Score=28.92  Aligned_cols=27  Identities=19%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|..+++..|+.|..|++|+.|-.
T Consensus       210 ~dG~V~~~~~~~G~~V~~G~~l~~I~~  236 (331)
T PRK03598        210 SDGTILTRAVEPGTMLNAGSTVFTLSL  236 (331)
T ss_pred             CCeEEEeccCCCCCCcCCCCeEEEEec
Confidence            469999999999999999999998854

>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities

Probab=88.73  E-value=0.74  Score=24.98  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +....++.||.|++||.|+.+...
T Consensus        52 l~~~~v~~G~~V~~G~~IG~~g~~   75 (96)
T PF01551_consen   52 LDSVSVKVGDRVKAGQVIGTVGNT   75 (96)
T ss_dssp             ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred             cccccceecccccCCCEEEecCCC
Confidence            445568999999999999999854

The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=87.77  E-value=0.96  Score=29.91  Aligned_cols=22  Identities=27%  Similarity=0.643  Sum_probs=20.9

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.+++|++|++++.
T Consensus        68 ~~~~~~dG~~v~~g~~i~~i~G   89 (277)
T PRK05742         68 VHWQVADGERVSANQVLFHLEG   89 (277)
T ss_pred             EEEEeCCCCEEcCCCEEEEEEE
Confidence            7899999999999999999986

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=87.73  E-value=0.96  Score=30.05  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.+++|+.|++++.
T Consensus        66 ~v~~~~~dG~~v~~G~~i~~~~G   88 (281)
T PRK06543         66 TVTLAVADGERFEAGDILATVTG   88 (281)
T ss_pred             EEEEEeCCCCEecCCCEEEEEEe
Confidence            47899999999999999999986

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=87.73  E-value=0.99  Score=29.62  Aligned_cols=23  Identities=35%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.|++|++|++++.
T Consensus        57 ~v~~~~~dG~~v~~g~~i~~i~G   79 (272)
T cd01573          57 EVDLAAASGSRVAAGAVLLEAEG   79 (272)
T ss_pred             EEEEEcCCCCEecCCCEEEEEEE
Confidence            36799999999999999999986

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=87.56  E-value=0.99  Score=30.00  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.|++|+.|++++.
T Consensus        62 ~v~~~~~dG~~v~~G~~i~~~~G   84 (284)
T PRK06096         62 TIDDAVSDGSQANAGQRLISAQG   84 (284)
T ss_pred             EEEEEeCCCCEeCCCCEEEEEEe
Confidence            37899999999999999999985

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=87.54  E-value=1  Score=29.72  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.8

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.+++||+|++++.
T Consensus        60 ~~~~~~dG~~v~~g~~i~~i~G   81 (273)
T PRK05848         60 CVFTIKDGERFKKGDILMEIEG   81 (273)
T ss_pred             EEEEcCCCCEecCCCEEEEEEE
Confidence            6899999999999999999986

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=87.49  E-value=1.6  Score=29.17  Aligned_cols=31  Identities=13%  Similarity=0.107  Sum_probs=24.2

Q ss_pred             EEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         31 CEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        31 ~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +.++.. -...+.|+.+|.|.++++++|++ |.
T Consensus        54 G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~-V~   84 (370)
T PRK11578         54 GKLDAL-RKVDVGAQVSGQLKTLSVAIGDK-VK   84 (370)
T ss_pred             EEEEee-eEEEEecccceEEEEEEcCCCCE-Ec
Confidence            344443 36689999999999999999994 53

>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein

Probab=87.39  E-value=2.4  Score=26.27  Aligned_cols=40  Identities=23%  Similarity=0.263  Sum_probs=32.1

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ++++|+.+++||.++-++-. .+..+.-|.+   .++.+++|++
T Consensus       135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~  174 (189)
T TIGR00164       135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEK  174 (189)
T ss_pred             ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCE
Confidence            45899999999999999977 5666777766   2677888884

It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=87.30  E-value=1  Score=30.11  Aligned_cols=22  Identities=23%  Similarity=0.656  Sum_probs=20.7

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.|++|+.|++++.
T Consensus        87 v~~~~~dG~~v~~G~~i~~i~G  108 (296)
T PRK09016         87 IEWHVDDGDVITANQTLFELTG  108 (296)
T ss_pred             EEEEcCCCCEecCCCEEEEEEE
Confidence            6899999999999999999986

>PRK05305 phosphatidylserine decarboxylase; Provisional

Probab=87.19  E-value=2.3  Score=26.68  Aligned_cols=40  Identities=23%  Similarity=0.215  Sum_probs=32.5

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      +.++|+.+++||.++.++-. .+..+.-|.+   .++.+++|++
T Consensus       155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~k  194 (206)
T PRK05305        155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQK  194 (206)
T ss_pred             eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCE
Confidence            56899999999999999987 4666777766   2778889985

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=87.01  E-value=1.2  Score=32.10  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=24.0

Q ss_pred             CCeEEEEEEEcCCCC-EEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGD-AVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~-~V~~g~~l~~ie   34 (64)
                      ...|+|.++++++|+ .|..|++|+.+.
T Consensus       161 ~~~G~l~ki~~~eG~~~v~vG~~ia~i~  188 (539)
T PLN02744        161 MEEGYLAKIVKGDGAKEIKVGEVIAITV  188 (539)
T ss_pred             CCCcEEEEEEecCCCcccCCCCEEEEEc
Confidence            457999999999996 799999999883

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=86.98  E-value=1.3  Score=27.83  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=24.2

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|..+++..|+.|..|++|+.|-.
T Consensus        95 ~dG~V~~~~~~~G~~v~~g~~l~~i~~  121 (265)
T TIGR00999        95 FDGYITQKSVTLGDYVAPQAELFRVAD  121 (265)
T ss_pred             CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence            469999999999999999999998743

>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed

Probab=86.98  E-value=1.3  Score=35.14  Aligned_cols=40  Identities=20%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             EEEcCCCCEEcCCCeEEEEecC--------ceEEEEecCCCeEEEEEe
Q psy10440         15 KWLKKEGDAVAPGDVLCEIQTD--------KAVMSFETEEEGILAKIL   54 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~~ie~~--------k~~~~i~ap~~G~i~~~~   54 (64)
                      ..+|+.|+.|++||.|++....        |...+|.|..+|.+.--.
T Consensus       405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~  452 (1364)
T CHL00117        405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWST  452 (1364)
T ss_pred             EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEccc
Confidence            4689999999999999999763        344789999999985433

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=86.78  E-value=1.2  Score=29.16  Aligned_cols=24  Identities=46%  Similarity=0.817  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         12 TIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        12 ~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      -=.+|++++|+.+++|++|++++.
T Consensus        57 ~~v~~~~~dG~~v~~g~~i~~i~G   80 (269)
T cd01568          57 IEVEWLVKDGDRVEAGQVLLEVEG   80 (269)
T ss_pred             eEEEEEeCCCCEecCCCEEEEEEE
Confidence            346799999999999999999986

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.76  E-value=1.2  Score=29.72  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.+++|++|++++.
T Consensus        77 ~v~~~~~dG~~v~~g~~i~~i~G   99 (289)
T PRK07896         77 EVLDRVEDGARVPPGQALLTVTA   99 (289)
T ss_pred             EEEEEcCCCCEecCCCEEEEEEE
Confidence            47799999999999999999986

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.74  E-value=1.2  Score=29.62  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      -.+|++++|+.|++|+.|++++.
T Consensus        73 ~~~~~~~dG~~v~~g~~i~~~~G   95 (288)
T PRK07428         73 SFTPLVAEGAACESGQVVAEIEG   95 (288)
T ss_pred             EEEEEcCCCCEecCCCEEEEEEE
Confidence            35799999999999999999986

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.35  E-value=1.3  Score=29.46  Aligned_cols=24  Identities=38%  Similarity=0.565  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         12 TIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        12 ~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      --.+|++++|+.+++|+.|++++.
T Consensus        70 ~~~~~~~~dG~~v~~g~~i~~i~G   93 (281)
T PRK06106         70 IEMRRHLPDGAAVAPGDVIATISG   93 (281)
T ss_pred             eEEEEEeCCCCEEcCCCEEEEEEE
Confidence            347899999999999999999986

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=86.18  E-value=1.7  Score=29.82  Aligned_cols=49  Identities=12%  Similarity=0.062  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +.-..++.++.-..=+..+.+++. ....|.++.+|+|.++++++|++ |.
T Consensus        62 V~v~~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~-Vk  110 (415)
T PRK11556         62 VQAATATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQ-VK  110 (415)
T ss_pred             eEEEEEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCE-ec
Confidence            333344444433333455666664 47789999999999999999984 53

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.12  E-value=1.3  Score=29.59  Aligned_cols=23  Identities=30%  Similarity=0.741  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.|++|+.|++++.
T Consensus        83 ~v~~~~~dG~~v~~G~~i~~~~G  105 (294)
T PRK06978         83 EVTWRYREGDRMTADSTVCELEG  105 (294)
T ss_pred             EEEEEcCCCCEeCCCCEEEEEEe
Confidence            47899999999999999999975

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=86.02  E-value=1.3  Score=29.81  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      -.+|++++|+.|++|+.|++++.
T Consensus        79 ~v~~~~~dG~~v~~G~~i~~v~G  101 (308)
T PLN02716         79 KVEWAAIDGDFVHKGLKFGKVTG  101 (308)
T ss_pred             EEEEEeCCCCEecCCCEEEEEEE
Confidence            36799999999999999999975

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=86.01  E-value=1.4  Score=29.24  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.|++|+.|++++.
T Consensus        59 ~v~~~~~dG~~v~~g~~i~~i~G   81 (278)
T PRK08385         59 KVEVRKRDGEEVKAGEVILELKG   81 (278)
T ss_pred             EEEEEcCCCCEecCCCEEEEEEE
Confidence            36899999999999999999986

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=85.94  E-value=0.71  Score=29.43  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=14.8

Q ss_pred             EEEecCCCeEEEEEecCCCCccc
Q psy10440         40 MSFETEEEGILAKILVPENTTDG   62 (64)
Q Consensus        40 ~~i~ap~~G~i~~~~~~~g~~~v   62 (64)
                      ..|.++.+|+|.++++++|+. |
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~-V   23 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQR-V   23 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEE-E
T ss_pred             EEEeCCCCeEEEEEEccCcCE-E
Confidence            468999999999999999984 5

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=85.69  E-value=1.5  Score=28.74  Aligned_cols=22  Identities=50%  Similarity=1.075  Sum_probs=20.4

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.+++|++|++++.
T Consensus        56 v~~~~~dG~~v~~g~~i~~i~G   77 (265)
T TIGR00078        56 VEWLVKDGDRVEPGEVVAEVEG   77 (265)
T ss_pred             EEEEeCCCCEecCCCEEEEEEE
Confidence            4799999999999999999986

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=85.20  E-value=1.6  Score=28.94  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      -.+|++++|+.|++|+.|++++.
T Consensus        61 ~~~~~~~dG~~v~~g~~i~~~~G   83 (277)
T TIGR01334        61 SIDYAVPSGSRALAGTLLLEAKG   83 (277)
T ss_pred             EEEEEeCCCCEeCCCCEEEEEEe
Confidence            47899999999999999999986

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=85.19  E-value=1.2  Score=29.60  Aligned_cols=27  Identities=19%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.+.+++.|+.|..|++|+.|-.
T Consensus       215 ~dG~V~~~~~~~G~~V~~g~~l~~I~~  241 (346)
T PRK10476        215 FDGRVVGLKVSVGEFAAPMQPIFTLID  241 (346)
T ss_pred             CCcEEEeeecCCCCCcCCCCeEEEEec
Confidence            469999999999999999999999854

>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component

Probab=85.11  E-value=0.86  Score=33.08  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +|+-.+.++++||+|++||.|++++-+
T Consensus       542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~  568 (610)
T TIGR01995       542 NGEGFEILVKVGDHVKAGQLLLTFDLD  568 (610)
T ss_pred             CCCCeEEEecCcCEEcCCCEEEEecHH
Confidence            567789999999999999999999753

This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.

>TIGR02643 T_phosphoryl thymidine phosphorylase

Probab=84.83  E-value=1.2  Score=31.32  Aligned_cols=27  Identities=22%  Similarity=0.211  Sum_probs=22.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +.+-=+.++++.|+.|++||+|++|-+
T Consensus       377 D~~aGi~l~~k~Gd~V~~Gd~l~~i~~  403 (437)
T TIGR02643       377 DYSVGLTDLLPLGDRVEKGEPLAVVHA  403 (437)
T ss_pred             CcccCeEeccCCcCEeCCCCeEEEEEC
Confidence            344457899999999999999999974

Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.

>PRK05820 deoA thymidine phosphorylase; Reviewed

Probab=84.60  E-value=1.3  Score=31.21  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=22.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +.+-=+.++++.|+.|++||+|++|-+
T Consensus       378 d~~aGi~l~~k~G~~V~~Gd~l~~i~~  404 (440)
T PRK05820        378 DYSVGLTLHARLGDRVDAGEPLATLHA  404 (440)
T ss_pred             CcCCCeEEccCCcCEECCCCeEEEEeC
Confidence            344457899999999999999999974

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=84.17  E-value=2.5  Score=27.12  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=24.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|..+.++.|+.+.+|++|+.|-.
T Consensus       141 ~~G~V~~~~~~~G~~v~~g~~l~~i~~  167 (322)
T TIGR01730       141 FDGTIGRRLVEVGAYVTAGQTLATIVD  167 (322)
T ss_pred             CCcEEEEEEcCCCceeCCCCcEEEEEc
Confidence            469999999999999999999999965

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=83.99  E-value=1  Score=32.99  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=23.1

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +|+-.+.++++||+|++||+|++++-
T Consensus       558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~  583 (627)
T PRK09824        558 DGKFFTAHVNVGDKVNTGDLLIEFDI  583 (627)
T ss_pred             CCCCceEEecCCCEEcCCCEEEEEcH
Confidence            46667899999999999999999975

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=83.95  E-value=4.9  Score=26.57  Aligned_cols=26  Identities=12%  Similarity=0.254  Sum_probs=23.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|.|.+.+++.|+.|..|++++.|-
T Consensus       161 ~dGvV~~~~~~~G~~V~~g~~l~~Iv  186 (310)
T PRK10559        161 ADGWVTNLNVYTGEFITRGSTAVALV  186 (310)
T ss_pred             CCeEEEeEecCCCCEecCCCeeEEEE
Confidence            46999999999999999999999764

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=83.79  E-value=3.8  Score=28.11  Aligned_cols=27  Identities=26%  Similarity=0.439  Sum_probs=24.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      -.|.|.+.++++|+.|..|+.|++|-.
T Consensus       216 ~dGvV~~~~v~~G~~V~~g~~L~~I~d  242 (409)
T PRK09783        216 IDGVITAFDLRAGMNIAKDNVVAKIQG  242 (409)
T ss_pred             CCeEEEEEECCCCCEECCCCeEEEEEc
Confidence            369999999999999999999999965

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=83.78  E-value=2.3  Score=29.01  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|...+++.|+.|..|++|+.|-.
T Consensus       222 ~dG~V~~~~v~~G~~V~~g~pl~~Iv~  248 (390)
T PRK15136        222 MTGYVSRRSVQVGAQISPTTPLMAVVP  248 (390)
T ss_pred             CCeEEEEEecCCCCEeCCCCeEEEEEe
Confidence            369999999999999999999998843

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=83.77  E-value=1.7  Score=31.93  Aligned_cols=27  Identities=41%  Similarity=0.594  Sum_probs=24.7

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.++.+.+|+.|..|++|++++
T Consensus       618 ~~dG~V~~v~v~~Gd~V~~g~vLve~~  644 (645)
T COG4770         618 PRDGVVAKLAVAEGDQVAVGTVLVEFE  644 (645)
T ss_pred             CcCcEEEEEEecCCCccccCceEEEec
Confidence            356999999999999999999999986

>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase

Probab=83.72  E-value=2  Score=30.79  Aligned_cols=28  Identities=36%  Similarity=0.448  Sum_probs=23.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..+-=+.++++.|+.|++||+|++|-++
T Consensus       444 d~~aGi~l~~k~Gd~V~~Gd~l~~i~a~  471 (493)
T TIGR02645       444 DKGAGVELHVKVGDQVKKGDPLYTIYAE  471 (493)
T ss_pred             CcCcCeEEeccCCCEecCCCeEEEEECC
Confidence            3444578999999999999999999743

Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.

>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase

Probab=83.48  E-value=2  Score=29.95  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=23.2

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +.+-=+.++++.|+.|++||+|++|-++
T Consensus       371 d~~aGi~l~~k~G~~V~~g~~l~~i~~~  398 (405)
T TIGR02644       371 DHEAGIYLHKKTGDRVKKGDPLATLYSS  398 (405)
T ss_pred             CcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence            3444578899999999999999999754

In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=83.30  E-value=2.8  Score=29.02  Aligned_cols=31  Identities=16%  Similarity=0.220  Sum_probs=24.5

Q ss_pred             EEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         32 EIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        32 ~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .|........|.++..|+|.++++++|+. |.
T Consensus        52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~-V~   82 (457)
T TIGR01000        52 TIEPAKILSKIQSTSNNAIKENYLKENKF-VK   82 (457)
T ss_pred             EEEecCceEEEEcCCCcEEEEEEcCCCCE-ec
Confidence            34444446789999999999999999994 53

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=83.01  E-value=5  Score=27.39  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=24.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|....+..|+.|..|++|+.|..
T Consensus       260 ~dG~V~~~~~~~G~~v~~g~~l~~i~~  286 (421)
T TIGR03794       260 HSGRVIELNYTPGQLVAAGAPLASLEV  286 (421)
T ss_pred             CCeEEEEeeCCCCCEecCCCcEEEEEc
Confidence            469999999999999999999999953

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed

Probab=82.97  E-value=1.9  Score=30.35  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=23.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +.+-=+.++++.||.|++||+|++|-+++
T Consensus       373 d~~aGi~l~~k~g~~V~~g~~l~~i~~~~  401 (434)
T PRK06078        373 DLAVGIVLRKKVGDSVKKGESLATIYANR  401 (434)
T ss_pred             CcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence            44555789999999999999999997543

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=82.68  E-value=2.1  Score=27.58  Aligned_cols=29  Identities=17%  Similarity=0.187  Sum_probs=18.5

Q ss_pred             EEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         31 CEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        31 ~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +.++.  ....+.+|.+|+| ++++.+|++ |.
T Consensus        15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~~-V~   43 (328)
T PF12700_consen   15 GTVEP--NEVSVSAPVSGRV-SVNVKEGDK-VK   43 (328)
T ss_dssp             EEEEE--SEEEE--SS-EEE-EE-S-TTSE-EE
T ss_pred             EEEEE--EEEEEECCCCEEE-EEEeCCcCE-EC
Confidence            35554  4678999999999 999999995 64

...

>TIGR02876 spore_yqfD sporulation protein YqfD

Probab=82.55  E-value=2.7  Score=28.87  Aligned_cols=44  Identities=27%  Similarity=0.372  Sum_probs=26.8

Q ss_pred             CeEEEEEEE-------cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEE
Q psy10440          9 TEGTIVKWL-------KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAK   52 (64)
Q Consensus         9 ~~g~i~~w~-------v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~   52 (64)
                      ..|.|.++.       |++||.|++||.|..=...+....-.-+.+|.|..
T Consensus       193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~a  243 (382)
T TIGR02876       193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVFA  243 (382)
T ss_pred             CCCEEEEEEEcCCeEEEccCCEEcCCCEEEEeEeCCCCceEEEccceEEEE
Confidence            457787775       56789999999998432222222224455666644

YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=82.46  E-value=3.7  Score=27.67  Aligned_cols=33  Identities=12%  Similarity=0.078  Sum_probs=26.0

Q ss_pred             eEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         29 VLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        29 ~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..+.++.. ....|.++.+|+|.++++++|++ |.
T Consensus        54 ~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~-Vk   86 (385)
T PRK09578         54 LPGRLDAY-RQAEVRARVAGIVTARTYEEGQE-VK   86 (385)
T ss_pred             EEEEEEEe-eEEEEeccCcEEEEEEECCCCCE-Ec
Confidence            44566654 36789999999999999999984 53

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=82.23  E-value=4  Score=27.56  Aligned_cols=45  Identities=13%  Similarity=0.071  Sum_probs=31.4

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .++.++.-..-+..+.++... ...+.++.+|+|.++++.+|++ |.
T Consensus        40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~-Vk   84 (385)
T PRK09859         40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDK-VN   84 (385)
T ss_pred             EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCE-ec
Confidence            334444333444556666543 6789999999999999999994 53

>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional

Probab=81.79  E-value=1.3  Score=32.51  Aligned_cols=27  Identities=37%  Similarity=0.531  Sum_probs=23.4

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +|+-.+.++++||+|++||.|++++.+
T Consensus       578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~  604 (648)
T PRK10255        578 EGKGFKRLVEEGAQVSAGQPILEMDLD  604 (648)
T ss_pred             CCCCceEEecCCCEEcCCCEEEEEcHH
Confidence            466678999999999999999999753

>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit

Probab=81.20  E-value=3.4  Score=32.63  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=31.7

Q ss_pred             EEEcCCCCEEcCCCeEEEEecC-------ceEEEEecCCCeEEEE
Q psy10440         15 KWLKKEGDAVAPGDVLCEIQTD-------KAVMSFETEEEGILAK   52 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~~ie~~-------k~~~~i~ap~~G~i~~   52 (64)
                      -.+|+.|+.|+++|.|+++-+.       |..-.|+|..+|.+--
T Consensus       404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~  448 (1227)
T TIGR02388       404 LLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKF  448 (1227)
T ss_pred             EEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEe
Confidence            3579999999999999999864       4467899999998843

The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.

>PRK10871 nlpD lipoprotein NlpD; Provisional

Probab=80.96  E-value=1.3  Score=30.03  Aligned_cols=23  Identities=17%  Similarity=0.291  Sum_probs=19.4

Q ss_pred             EEEEcCCCCEEcCCCeEEEEecC
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      .+++|++||.|++||.|+.+-+.
T Consensus       270 ~~i~Vk~Gq~V~~Gq~Ig~~G~t  292 (319)
T PRK10871        270 DTMLVREQQEVKAGQKIATMGST  292 (319)
T ss_pred             CccccCCcCEECCCCeEEeEcCC
Confidence            34679999999999999998654

>PRK04350 thymidine phosphorylase; Provisional

Probab=80.31  E-value=3.4  Score=29.58  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=23.6

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ++.+-=+.++++.||.|++||+|++|-+.
T Consensus       435 ~d~~aGi~l~~k~Gd~V~~G~~l~~i~a~  463 (490)
T PRK04350        435 KDKGAGIDLHVKVGDKVKKGDPLYTIHAE  463 (490)
T ss_pred             cCcccCeEEeccCCCEecCCCeEEEEecC
Confidence            34455578999999999999999999743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	64
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		3e-18
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		8e-18
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		6e-16
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		7e-16
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		3e-15
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		1e-14
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		5e-09
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		6e-09
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		7e-07
1ghj_A	79	Solution Structure Of The Lipoyl Domain Of The 2- O		9e-06
1k8o_A	93	Solution Structure Of The Lipoic Acid-Bearing Domai		5e-05
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		3e-04

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E + 
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 61 D 61
          +
Sbjct: 72 N 72

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T 
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 91
Query: 61 D 61
          D
Sbjct: 92 D 92

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T 
Sbjct: 14 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 73
Query: 61 D 61
          D
Sbjct: 74 D 74

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 47/61 (77%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAKILVPE T 
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTR 69
Query: 61 D 61
          D
Sbjct: 70 D 70

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 45/61 (73%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AKILV E T 
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 61 D 61
          D
Sbjct: 72 D 72

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT 59
          +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE T
Sbjct: 7  LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 65

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE T 
Sbjct: 6  LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P L  ++ + T+  W KK GDAV   +VL EI+TDK V+      +GIL  +L  E TT
Sbjct: 7  VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 2  PSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+  E  T
Sbjct: 7  PTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65

>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of The E2 Component Of Human, Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKIL 54
          +  +   + E T+ +W  KEGD V+  D +CE+Q+DKA ++  +  +G++ K+ 
Sbjct: 9  LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLY 62

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN 58
          +P +   +TEG IV+W  KEGD V     L E+ TDK  +   +   G + KIL  E 
Sbjct: 6  LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	64
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	2e-34
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	7e-34
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	3e-33
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	8e-32
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	4e-29
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-16
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	4e-14
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	4e-14
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	1e-13
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	3e-13
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	5e-07
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	1e-06
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	4e-04
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	4e-04
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	6e-04
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	7e-04
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	7e-04
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	7e-04
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	7e-04

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  112 bits (281), Expect = 2e-34
 Identities = 37/64 (57%), Positives = 49/64 (76%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T 
Sbjct: 32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 91

Query: 61 DGKV 64
          D  +
Sbjct: 92 DVPL 95

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  110 bits (276), Expect = 7e-34
 Identities = 40/64 (62%), Positives = 53/64 (82%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          MPSLSPTM EG IVKWLKKEG+AV+ GD LCEI+TDKAV++ +  ++GILAKI+V E + 
Sbjct: 12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71

Query: 61 DGKV 64
          + ++
Sbjct: 72 NIRL 75

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  108 bits (272), Expect = 3e-33
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +PSLSPTM  GTI +W KKEGD +  GD++ E++TDKA + FE+ EE  +AKILV E T 
Sbjct: 12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71

Query: 61 DGKV 64
          D  +
Sbjct: 72 DVPI 75

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score = 97.5 bits (243), Expect = 4e-29
 Identities = 36/64 (56%), Positives = 48/64 (75%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TD A + FE +EEG LAKILVPE T 
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTR 69

Query: 61 DGKV 64
          D  +
Sbjct: 70 DVPL 73

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 68.8 bits (169), Expect = 5e-16
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE T 
Sbjct: 7  LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 59.2 bits (144), Expect = 4e-14
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P L  ++ + T+  W KK GDAV   +VL EI+TDK V+      +GIL  +L  E TT
Sbjct: 7  VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 59.2 bits (144), Expect = 4e-14
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+  E  T
Sbjct: 6  APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 58.0 bits (141), Expect = 1e-13
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P +   +TEG IV+W  KEGD V     L E+ TDK  +   +   G + KIL  E   
Sbjct: 6  LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 57.3 bits (139), Expect = 3e-13
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +  +   + E T+ +W  KEGD V+  D +CE+Q+DKA ++  +  +G++ K+    +  
Sbjct: 9  LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 41.6 bits (98), Expect = 5e-07
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
          G + ++  ++G  V  G    E++  K +M+   +E G +  I  P
Sbjct: 14 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRP 59

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 40.9 bits (96), Expect = 1e-06
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP 56
          G + ++  ++G  V  G    E++  K +M+   +E G +  I  P
Sbjct: 26 GKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRP 71

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Length = 285

 Score = 35.2 bits (82), Expect = 4e-04
 Identities = 5/21 (23%), Positives = 12/21 (57%)

Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
           K+  ++G+ +    V+ EI+
Sbjct: 73 SKFNVEDGEYLEGTGVIGEIE 93

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 11   GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPE 57
            G   K +   GD V  GD +  I+  K  M     + G + KIL   
Sbjct: 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKN 1222

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Length = 287

 Score = 34.8 bits (81), Expect = 6e-04
 Identities = 4/21 (19%), Positives = 9/21 (42%)

Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
          + WL  +   V     + E++
Sbjct: 77 ITWLYSDAQKVPANARIFELK 97

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Length = 320

 Score = 34.5 bits (80), Expect = 7e-04
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 14  VKWLKKEGDAVAPGDVLCEIQ 34
           ++W  ++GD + P   LC + 
Sbjct: 110 IEWHVQDGDTLTPNQTLCTLT 130

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Length = 273

 Score = 34.3 bits (80), Expect = 7e-04
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 14 VKWLKKEGDAVAPGDVLCEIQ 34
               K+ +   P D L EI+
Sbjct: 60 CVQTIKDKERFKPKDALMEIR 80

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Length = 300

 Score = 34.4 bits (80), Expect = 7e-04
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 14  VKWLKKEGDAVAPGDVLCEIQ 34
            +  KK+GD       L   +
Sbjct: 86  YEIHKKDGDITGKNSTLVSGE 106

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 34.6 bits (80), Expect = 7e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 11  GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           G ++      G  VA G  LC +   K      +  EG + K+ V ++ T
Sbjct: 658 GKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT 707

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	64
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.79
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.78
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.78
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.77
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.76
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.75
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.73
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.71
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.69
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.67
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.67
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.66
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.66
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.56
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.54
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.51
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.49
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.47
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.47
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.44
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	99.44
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.43
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.43
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.38
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	99.35
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	99.29
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	99.24
1hpc_A	131	H protein of the glycine cleavage system; transit	99.17
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	99.17
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	99.14
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	99.13
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	99.12
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	99.12
3klr_A	125	Glycine cleavage system H protein; antiparallel be	98.98
3mxu_A	143	Glycine cleavage system H protein; seattle structu	98.91
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	98.87
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	98.81
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	98.52
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	98.52
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	98.49
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	98.42
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	98.28
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	97.9
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	97.75
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	97.64
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	97.55
2qj8_A	332	MLR6093 protein; structural genomics, joint center	97.19
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	97.16
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	96.81
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	96.71
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	96.59
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	96.53
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	96.44
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	96.43
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	96.22
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	96.2
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	96.09
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	96.06
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	95.83
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.61
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	95.51
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	95.42
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	95.37
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	95.2
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	95.2
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	94.97
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	94.49
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	94.48
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	94.43
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	94.28
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	93.98
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	93.68
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	93.6
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	92.93
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	92.87
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	92.16
2bco_A	350	Succinylglutamate desuccinylase; NESG, VPR14, stru	91.8
3our_B	183	EIIA, phosphotransferase system IIA component; exh	91.72
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	91.51
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	91.06
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	90.83
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	90.82
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	90.68
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	90.44
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	90.37
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	89.82
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	89.58
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	89.54
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	89.49
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	89.43
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	88.96
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	88.8
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	88.75
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	88.58
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	88.26
3it5_A	182	Protease LASA; metallopeptidase, beta-protein, cel	88.18
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	88.12
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	87.71
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	86.29
2xha_A	193	NUSG, transcription antitermination protein NUSG;	86.29
1brw_A	433	PYNP, protein (pyrimidine nucleoside phosphorylase	84.7
2dsj_A	423	Pyrimidine-nucleoside (thymidine) phosphorylase; p	84.43
3tuf_B	245	Stage II sporulation protein Q; intercellular sign	84.39
2hsi_A	282	Putative peptidase M23; structural genomics, PSI,	83.77
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	83.65
1uou_A	474	Thymidine phosphorylase; transferase, glycosyltran	83.11
3h5q_A	436	PYNP, pyrimidine-nucleoside phosphorylase; structu	83.04
1qwy_A	291	Peptidoglycan hydrolase; LYTM lysostaphin metallop	82.98
3our_B	183	EIIA, phosphotransferase system IIA component; exh	80.73
3nyy_A	252	Putative glycyl-glycine endopeptidase LYTM; struct	80.54

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.79  E-value=1e-18  Score=95.72  Aligned_cols=59  Identities=59%  Similarity=0.973  Sum_probs=57.6

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      +|.++.++.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+
T Consensus        10 ~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~   68 (87)
T 3crk_C           10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGT   68 (87)
T ss_dssp             CCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred             CCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCC
Confidence            68999999999999999999999999999999999999999999999999999999997

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.78  E-value=9.3e-19  Score=97.23  Aligned_cols=62  Identities=27%  Similarity=0.542  Sum_probs=59.0

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.++.+|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+. |.
T Consensus         9 ~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~   70 (93)
T 1k8m_A            9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AY   70 (93)
T ss_dssp             CCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-EC
T ss_pred             cCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eC
Confidence            699999999999999999999999999999999999999999999999999999999984 54

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=97.51  Aligned_cols=60  Identities=67%  Similarity=1.118  Sum_probs=58.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ||.++.++.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+.
T Consensus        12 ~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~   71 (98)
T 2dnc_A           12 MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK   71 (98)
T ss_dssp             CCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC
T ss_pred             CCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE
Confidence            699999999999999999999999999999999999999999999999999999999984

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.77  E-value=1.6e-18  Score=93.14  Aligned_cols=62  Identities=34%  Similarity=0.650  Sum_probs=59.0

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.++.+|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+. +.
T Consensus         6 ~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~   67 (79)
T 1ghj_A            6 APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VL   67 (79)
T ss_dssp             CCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-EC
T ss_pred             CCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-EC
Confidence            689999999999999999999999999999999999999999999999999999999984 54

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.76  E-value=3.3e-18  Score=97.43  Aligned_cols=59  Identities=58%  Similarity=0.924  Sum_probs=57.6

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      ||.++.++.+|+|.+|++++||.|++||.|++||++|+..+|+||++|+|.++++++|+
T Consensus        12 ~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~   70 (108)
T 2dne_A           12 LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGT   70 (108)
T ss_dssp             CCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTC
T ss_pred             cCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999999999997

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.75  E-value=8.8e-18  Score=98.35  Aligned_cols=59  Identities=61%  Similarity=0.995  Sum_probs=57.6

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      ||.++.++.+|+|.+|++++||.|++||.|+++|++|+..+|+||++|+|.++++++|+
T Consensus        32 ~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd   90 (128)
T 1y8o_B           32 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGT   90 (128)
T ss_dssp             CCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTC
T ss_pred             cCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999999999997

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.73  E-value=7.7e-18  Score=89.96  Aligned_cols=62  Identities=35%  Similarity=0.550  Sum_probs=58.9

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.+...|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus         6 ~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~   67 (77)
T 2l5t_A            6 LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VP   67 (77)
T ss_dssp             CCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-EC
T ss_pred             CCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-EC
Confidence            689999999999999999999999999999999999999999999999999999999984 53

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.71  E-value=4e-17  Score=87.58  Aligned_cols=60  Identities=25%  Similarity=0.345  Sum_probs=56.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.+  +|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus         7 ~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~   66 (80)
T 1qjo_A            7 VPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VK   66 (80)
T ss_dssp             CCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-EC
T ss_pred             CCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-EC
Confidence            6888876  899999999999999999999999999999999999999999999999984 53

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.69  E-value=5.7e-19  Score=95.26  Aligned_cols=62  Identities=40%  Similarity=0.670  Sum_probs=58.8

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.++.+|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+. +.
T Consensus         7 ~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~   68 (80)
T 1pmr_A            7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VT   68 (80)
T ss_dssp             CCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-EC
T ss_pred             cCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-EC
Confidence            699999999999999999999999999999999999999999999999999999999983 53

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.67  E-value=3.9e-17  Score=87.90  Aligned_cols=59  Identities=25%  Similarity=0.388  Sum_probs=55.9

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      +|.++ +...|+|.+|++++||.|++||.|+.+|++|+..+|+||++|+|.++++++|+.
T Consensus         7 ~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~   65 (81)
T 1gjx_A            7 VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK   65 (81)
T ss_dssp             CCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE
T ss_pred             cCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE
Confidence            68888 578899999999999999999999999999999999999999999999999983

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.67  E-value=2.5e-16  Score=84.49  Aligned_cols=59  Identities=20%  Similarity=0.346  Sum_probs=54.8

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +|.++.+  + +|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus         6 ~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~   64 (79)
T 1iyu_A            6 VPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LK   64 (79)
T ss_dssp             CCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EE
T ss_pred             CCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-EC
Confidence            6888875  7 9999999999999999999999999999999999999999999999984 53

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.66  E-value=5.6e-18  Score=114.27  Aligned_cols=63  Identities=46%  Similarity=0.790  Sum_probs=0.0

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||.|++||+||+..+|.||++|+|.++++++|+ .|++
T Consensus         7 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~   69 (428)
T 3dva_I            7 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATV   69 (428)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCC
Confidence            79999999999999999999999999999999999999999999999999999999998 4653

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.56  E-value=3.3e-14  Score=74.49  Aligned_cols=52  Identities=19%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+|.+|++++|+.|++||.|+.+++++....|+||++|+|.++++++|+.
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~   57 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF   57 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE
Confidence            4699999999999999999999999999999999999999999999999984

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-14  Score=78.60  Aligned_cols=54  Identities=19%  Similarity=0.359  Sum_probs=49.9

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ...|+|.+|++++|+.|++||.|+.+|++|+..+|+||++|+|.+++ .+|+. |.
T Consensus        11 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~   64 (84)
T 2kcc_A           11 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LE   64 (84)
T ss_dssp             SSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CC
T ss_pred             CCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-EC
Confidence            45699999999999999999999999999999999999999999999 99983 53

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=7.9e-14  Score=77.80  Aligned_cols=52  Identities=17%  Similarity=0.397  Sum_probs=49.1

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ...|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|. +++++|+.
T Consensus        23 ~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~   74 (100)
T 2dn8_A           23 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV   74 (100)
T ss_dssp             SSCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE
T ss_pred             CCCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE
Confidence            35799999999999999999999999999999999999999999 99999983

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.49  E-value=2.9e-13  Score=70.96  Aligned_cols=53  Identities=25%  Similarity=0.392  Sum_probs=49.8

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ...|+|.+|++++|+.|++||.|+.+++++....++||++|+|.++++++|+.
T Consensus        11 ~~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~   63 (74)
T 2d5d_A           11 PMPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA   63 (74)
T ss_dssp             SSCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE
T ss_pred             CCCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE
Confidence            34699999999999999999999999999999999999999999999999973

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.47  E-value=2.8e-13  Score=71.79  Aligned_cols=52  Identities=31%  Similarity=0.464  Sum_probs=49.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+|.+|++++|+.|++||.|+.+++++....|+||++|+|.++++.+|+.
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~   66 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA   66 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE
Confidence            4699999999999999999999999999999999999999999999999983

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.47  E-value=2e-15  Score=82.06  Aligned_cols=52  Identities=25%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      |+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++++|+. |.
T Consensus        11 G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~   62 (85)
T 2k7v_A           11 VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VK   62 (85)
T ss_dssp             CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BC
T ss_pred             EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-EC
Confidence            89999999999999999999999999999999999999999999999983 53

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.44  E-value=3.1e-13  Score=72.31  Aligned_cols=54  Identities=26%  Similarity=0.418  Sum_probs=48.8

Q ss_pred             CeEEEEE-------EEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVK-------WLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~-------w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|++.+       |++++|+.|++||.|+.+|++|+..+|+||++|+|.++++++|+. |.
T Consensus        11 ~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~   71 (80)
T 1bdo_A           11 MVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VE   71 (80)
T ss_dssp             SSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-EC
T ss_pred             CCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-EC
Confidence            3577777       499999999999999999999999999999999999999999983 53

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=99.44  E-value=3.8e-13  Score=94.55  Aligned_cols=54  Identities=30%  Similarity=0.397  Sum_probs=51.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|+|++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+. |.
T Consensus       619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~  672 (681)
T 3n6r_A          619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LA  672 (681)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-EC
T ss_pred             CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eC
Confidence            4699999999999999999999999999999999999999999999999984 64

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.43  E-value=4.3e-14  Score=78.27  Aligned_cols=52  Identities=29%  Similarity=0.405  Sum_probs=26.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+|.+|++++||.|++||.|+.+|++|+...|+||++|+|.++++.+|+.
T Consensus        32 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~   83 (94)
T 2jku_A           32 MPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT   83 (94)
T ss_dssp             SSCEEEEECCCTTCCCCTTCCCEEEEC-------------------------
T ss_pred             CCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE
Confidence            4799999999999999999999999999999999999999999999999983

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.43  E-value=5.6e-13  Score=74.27  Aligned_cols=52  Identities=29%  Similarity=0.400  Sum_probs=49.5

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      ...|+|.+|++++|+.|++||.|+.++++|+...|+||++|+|.++++.+|+
T Consensus        20 ~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~   71 (99)
T 2ejm_A           20 PMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA   71 (99)
T ss_dssp             SSSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE
T ss_pred             CCCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC
Confidence            3479999999999999999999999999999999999999999999999987

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.38  E-value=1.2e-12  Score=96.70  Aligned_cols=54  Identities=26%  Similarity=0.242  Sum_probs=51.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|+|++||.|++||+|++||+||+..+|+||.+|+|.++++++|+ .|.
T Consensus      1174 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~ 1227 (1236)
T 3va7_A         1174 YTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVE 1227 (1236)
T ss_dssp             SCEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EEC
T ss_pred             CcEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeC
Confidence            469999999999999999999999999999999999999999999999999 465

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=99.35  E-value=2.4e-12  Score=94.65  Aligned_cols=54  Identities=15%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|+|++||.|++||+|+++|+||+..+|+||.+|+|.++++++|+. |.
T Consensus      1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~ 1137 (1150)
T 3hbl_A         1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IA 1137 (1150)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-EC
T ss_pred             ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eC
Confidence            4699999999999999999999999999999999999999999999999984 64

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=99.24  E-value=2.6e-11  Score=71.45  Aligned_cols=49  Identities=24%  Similarity=0.312  Sum_probs=42.3

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE---ecCCCC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI---LVPENT   59 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~---~~~~g~   59 (64)
                      |.|..+.+ +.|+.|++||.|+.||++|+..+|+||++|+|+++   ++..++
T Consensus        45 G~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~   97 (136)
T 1zko_A           45 GDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE   97 (136)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT
T ss_pred             CCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc
Confidence            44555555 99999999999999999999999999999999999   555555

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=99.17  E-value=2e-11  Score=71.57  Aligned_cols=48  Identities=17%  Similarity=0.174  Sum_probs=42.6

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN   58 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g   58 (64)
                      |.|..+.+ +.|+.|++||.|+.||++|+..+|+||++|+|++++...+
T Consensus        36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~   84 (131)
T 1hpc_A           36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLT   84 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHH
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhh
Confidence            45666666 9999999999999999999999999999999999986544

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=99.17  E-value=6.2e-11  Score=69.17  Aligned_cols=49  Identities=18%  Similarity=0.138  Sum_probs=42.7

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      |.|..+.+ +.|+.|++||.+++||++|+..+|+||++|+|++++...++
T Consensus        37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~   86 (128)
T 3a7l_A           37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSD   86 (128)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhcc
Confidence            44555555 99999999999999999999999999999999999876544

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=99.14  E-value=1.4e-10  Score=67.69  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVP   56 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~   56 (64)
                      |.|..+.+ +.|++|++||.+++||++|+..+|+||++|+|++++..
T Consensus        36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~   82 (128)
T 1onl_A           36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   82 (128)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhh
Confidence            44555555 99999999999999999999999999999999999764

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=99.13  E-value=1.5e-11  Score=87.32  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=50.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .+|+|.+|++++||.|++||.|+++|+||+...|+||.+|+|.++++++|+. |.
T Consensus       656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~  709 (718)
T 3bg3_A          656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LE  709 (718)
T ss_dssp             SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-EC
T ss_pred             CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eC
Confidence            4799999999999999999999999999999999999999999999999983 53

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=99.12  E-value=9.7e-11  Score=66.16  Aligned_cols=52  Identities=31%  Similarity=0.399  Sum_probs=46.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceE-----------------------------EEEecCCCeEEEEEecCCCC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAV-----------------------------MSFETEEEGILAKILVPENT   59 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~-----------------------------~~i~ap~~G~i~~~~~~~g~   59 (64)
                      ..|+|.+|++++|+.|++||+|+.+++.++.                             ..|+||++|+|..+.+.+|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            4699999999999999999999999987443                             48999999999999999997


Q ss_pred             c
Q psy10440         60 T   60 (64)
Q Consensus        60 ~   60 (64)
                      .
T Consensus        88 ~   88 (116)
T 2k32_A           88 Y   88 (116)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=99.12  E-value=3.9e-11  Score=88.34  Aligned_cols=54  Identities=30%  Similarity=0.458  Sum_probs=45.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..|+|.+|++++||.|++||.|+.+|+||+..+|+||.+|+|.++++++|+. |.
T Consensus      1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~ 1155 (1165)
T 2qf7_A         1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-ID 1155 (1165)
T ss_dssp             SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-EC
T ss_pred             CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-EC
Confidence            4699999999999999999999999999999999999999999999999984 54

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=98.98  E-value=1.6e-09  Score=63.02  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=41.7

Q ss_pred             EEEEEEEc-CCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440         11 GTIVKWLK-KEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus        11 g~i~~w~v-~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      |.|+.+.. +.|+.|++|+.++.||++|+..+|+||++|+|++++..-.+
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~   81 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE   81 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence            44555544 79999999999999999999999999999999999765443

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=98.91  E-value=3.7e-09  Score=62.74  Aligned_cols=48  Identities=19%  Similarity=0.236  Sum_probs=40.5

Q ss_pred             EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440         11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN   58 (64)
Q Consensus        11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g   58 (64)
                      |.|+-+. .+.|+.|++|+.++.||++|+..+|+||++|+|++++..-.
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~  102 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALA  102 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGG
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhh
Confidence            3444443 38999999999999999999999999999999999976543

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=98.87  E-value=4.3e-09  Score=62.10  Aligned_cols=45  Identities=20%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      |.|+-+. .+.|++|++|+.++.||++|+..+|+||++|+|++++.
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~   94 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT   94 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence            3444443 38999999999999999999999999999999999864

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=98.81  E-value=1.1e-08  Score=61.44  Aligned_cols=44  Identities=23%  Similarity=0.331  Sum_probs=38.1

Q ss_pred             EEEEE-EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         12 TIVKW-LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        12 ~i~~w-~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      .|+-+ +.+.|+.|++|+.++.||+.|+..+|+||++|+|++++-
T Consensus        60 dIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           60 DVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            34433 347999999999999999999999999999999999864

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=98.52  E-value=1.6e-07  Score=60.33  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=25.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|++||+|+.+++.
T Consensus        38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~   65 (341)
T 3fpp_A           38 VSGQLKTLSVAIGDKVKKDQLLGVIDPE   65 (341)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence            4699999999999999999999999873

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=98.52  E-value=2.7e-07  Score=59.65  Aligned_cols=28  Identities=43%  Similarity=0.588  Sum_probs=26.0

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|++||+|+.+++.
T Consensus        64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~   91 (359)
T 3lnn_A           64 LAGRIVSLNKQLGDEVKAGDVLFTIDSA   91 (359)
T ss_dssp             SCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred             CCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence            4699999999999999999999999874

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=98.49  E-value=5.3e-07  Score=59.97  Aligned_cols=52  Identities=17%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             CeEEEEEEEc-CCCCEEcCCCeEEEEecC------------------------------------------------ceE
Q psy10440          9 TEGTIVKWLK-KEGDAVAPGDVLCEIQTD------------------------------------------------KAV   39 (64)
Q Consensus         9 ~~g~i~~w~v-~~G~~V~~g~~l~~ie~~------------------------------------------------k~~   39 (64)
                      ..|.|.++++ ++||.|++||+|+.+++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            4699999998 999999999999999851                                                125


Q ss_pred             EEEecCCCeEEEEEecCCCCc
Q psy10440         40 MSFETEEEGILAKILVPENTT   60 (64)
Q Consensus        40 ~~i~ap~~G~i~~~~~~~g~~   60 (64)
                      ..|+||++|+|.++.+.+|+.
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~  228 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMN  228 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCE
T ss_pred             EEEEcCCCeEEEEEEcCCCCE
Confidence            689999999999999999983

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=98.42  E-value=7e-08  Score=60.55  Aligned_cols=27  Identities=33%  Similarity=0.460  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.|++||+|+.+++
T Consensus        29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~   55 (277)
T 2f1m_A           29 VSGIILKRNFKEGSDIEAGVSLYQIDP   55 (277)
T ss_dssp             SCEEEEEECSCTTCEECTTSCSEEECC
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEECc
Confidence            469999999999999999999999986

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=98.28  E-value=2.7e-07  Score=60.33  Aligned_cols=52  Identities=27%  Similarity=0.357  Sum_probs=45.1

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc---------------------------------------------------
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK---------------------------------------------------   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k---------------------------------------------------   37 (64)
                      ..|+|.++++++|+.|++||+|+.|++..                                                   
T Consensus        50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~  129 (369)
T 1vf7_A           50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  129 (369)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            46999999999999999999999998631                                                   


Q ss_pred             ------eEEEEecCCCeEEEEEecCCCCc
Q psy10440         38 ------AVMSFETEEEGILAKILVPENTT   60 (64)
Q Consensus        38 ------~~~~i~ap~~G~i~~~~~~~g~~   60 (64)
                            ....|+||++|+|..+.+.+|+.
T Consensus       130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~  158 (369)
T 1vf7_A          130 QARINLRYTKVLSPISGRIGRSAVTEGAL  158 (369)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCE
T ss_pred             HHHHhhcCCEEECCCCeEEEEEEcCCCCe
Confidence                  12489999999999999999873

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=97.90  E-value=2.7e-07  Score=59.72  Aligned_cols=28  Identities=39%  Similarity=0.589  Sum_probs=25.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|++||+|+.+++.
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~   66 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDST   66 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCH
Confidence            4699999999999999999999999863

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=97.75  E-value=0.00013  Score=47.80  Aligned_cols=48  Identities=19%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             EEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEEe----cCCCC
Q psy10440         12 TIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKIL----VPENT   59 (64)
Q Consensus        12 ~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~~----~~~g~   59 (64)
                      -+.+..++.|+.|++||.|+.+.+    .+...+|+||.+|+|....    +.+|+
T Consensus       276 G~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~~~~V~~Gd  331 (354)
T 3cdx_A          276 GLFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGD  331 (354)
T ss_dssp             EEEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTC
T ss_pred             EEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeCCCccCCCC
Confidence            378888999999999999999997    4677899999999998874    45665

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=97.64  E-value=0.00022  Score=46.50  Aligned_cols=49  Identities=14%  Similarity=0.352  Sum_probs=40.7

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecC----ceEEEEecCCCeEEEEEe----cCCCC
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTD----KAVMSFETEEEGILAKIL----VPENT   59 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~----k~~~~i~ap~~G~i~~~~----~~~g~   59 (64)
                      +-+.+..++.|+.|++||.|+.|.+.    ....+|+||.+|.|....    +.+|+
T Consensus       265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~~~~V~~G~  321 (331)
T 3na6_A          265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHFPGMIKSGD  321 (331)
T ss_dssp             CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEECSSEECTTC
T ss_pred             CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeCCCccCCCC
Confidence            34677789999999999999999873    457899999999998875    45555

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=97.55  E-value=0.00023  Score=47.14  Aligned_cols=49  Identities=20%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEec------CceEEEEecCCCeEEEEEe----cCCCC
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQT------DKAVMSFETEEEGILAKIL----VPENT   59 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~------~k~~~~i~ap~~G~i~~~~----~~~g~   59 (64)
                      +-+....++.|+.|++||.|+.|-.      .....+++||.+|+|...+    +.+|+
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~V~~G~  356 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASVHQGT  356 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEECTTC
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCccCCCC
Confidence            4567789999999999999999988      4577899999999998874    44554

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=97.19  E-value=0.0018  Score=41.89  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEec----CceEEEEecCCCeEEEEE----ecCCCC
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQT----DKAVMSFETEEEGILAKI----LVPENT   59 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~----~k~~~~i~ap~~G~i~~~----~~~~g~   59 (64)
                      +.+....++.|+.|++||.|+.+-.    .....+|+||.+|.|...    .+.+|+
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~~p~V~~Gd  321 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRSAMYVQGNE  321 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTC
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeCCCeeCCCC
Confidence            3455678899999999999999965    456789999999999887    467776

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=97.16  E-value=0.00097  Score=40.33  Aligned_cols=49  Identities=18%  Similarity=0.120  Sum_probs=40.4

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCceEE-EEecCCCeEEEEEecCCC
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVM-SFETEEEGILAKILVPEN   58 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~-~i~ap~~G~i~~~~~~~g   58 (64)
                      +|.-+-..+.+|+.|.+|+.++-+.|.|... .++||.+|+|.-+.--++
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~  157 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS  157 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence            3555667889999999999999999999855 699999999987664433

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=96.81  E-value=0.0024  Score=32.94  Aligned_cols=27  Identities=44%  Similarity=0.646  Sum_probs=24.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.|..|++|+.+++
T Consensus        51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (77)
T 2l5t_A           51 VRGKIVKILYREGQVVPVGSTLLQIDT   77 (77)
T ss_dssp             CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred             CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence            469999999999999999999999864

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=96.71  E-value=0.0027  Score=33.03  Aligned_cols=26  Identities=27%  Similarity=0.367  Sum_probs=23.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|+|.++++++|+.|..|+.|+.|+
T Consensus        55 ~~G~v~~~~v~~G~~V~~G~~L~~i~   80 (80)
T 1bdo_A           55 KSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEEcCCCCEECCCCEEEEEC
Confidence            46999999999999999999999875

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=96.59  E-value=0.0034  Score=31.76  Aligned_cols=28  Identities=43%  Similarity=0.599  Sum_probs=25.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|.|.++++++|+.|..|+.|+.+...
T Consensus        43 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~   70 (72)
T 1z6h_A           43 RSGIVKEVKKKEGDFVNEGDVLLELSNS   70 (72)
T ss_dssp             SCEEEEEESSCTTCEECTTCEEEEEGGG
T ss_pred             CCcEEEEEecCCCCEECCCCEEEEEeCC
Confidence            4699999999999999999999998754

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=96.53  E-value=0.0043  Score=32.16  Aligned_cols=27  Identities=33%  Similarity=0.671  Sum_probs=24.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.+..|++|+.++.
T Consensus        51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~   77 (79)
T 1ghj_A           51 ADGVIAEIVKNEGDTVLSGELLGKLTE   77 (79)
T ss_dssp             SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            469999999999999999999999875

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=96.44  E-value=0.0084  Score=32.34  Aligned_cols=28  Identities=29%  Similarity=0.372  Sum_probs=25.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|..|++|+.++..
T Consensus        54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~   81 (93)
T 1k8m_A           54 YDGVIKKLYYNLDDIAYVGKPLVDIETE   81 (93)
T ss_dssp             SCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence            4699999999999999999999999754

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=96.43  E-value=0.0028  Score=32.88  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|..|++|+.|+..
T Consensus        50 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~   77 (80)
T 1qjo_A           50 FAGVVKELKVNVGDKVKTGSLIMIFEVE   77 (80)
T ss_dssp             SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred             CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence            4699999999999999999999999864

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=96.22  E-value=0.0092  Score=31.60  Aligned_cols=28  Identities=39%  Similarity=0.548  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGD-AVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~-~V~~g~~l~~ie~~   36 (64)
                      ..|+|.+++++.|+ .|..|+.|+.++..
T Consensus        55 ~~G~v~~~~v~~G~~~V~~G~~l~~i~~~   83 (87)
T 3crk_C           55 EEGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (87)
T ss_dssp             SCEEEEEESSCTTCCCEETTCEEEEEESS
T ss_pred             cCcEEEEEEECCCCeEECCCCEEEEEEcc
Confidence            46999999999999 89999999999864

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=96.20  E-value=0.0055  Score=31.76  Aligned_cols=28  Identities=25%  Similarity=0.418  Sum_probs=25.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|..|++|+.++..
T Consensus        48 ~~G~v~~~~v~~G~~V~~g~~l~~i~~~   75 (79)
T 1iyu_A           48 KAGVVKSVSVKLGDKLKEGDAIIELEPA   75 (79)
T ss_dssp             SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            4699999999999999999999998764

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=96.09  E-value=0.01  Score=29.96  Aligned_cols=26  Identities=38%  Similarity=0.634  Sum_probs=23.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|.|.+++++.|+.+..|+.|+.++
T Consensus        49 ~~G~v~~~~~~~G~~v~~g~~l~~i~   74 (74)
T 2d5d_A           49 RDGVVKRILVKEGEAVDTGQPLIELG   74 (74)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEC
Confidence            46999999999999999999999875

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=96.06  E-value=0.016  Score=35.31  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=35.6

Q ss_pred             EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCC
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENT   59 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~   59 (64)
                      ..+++++|+.|++||.||+.+  .-+.+|.|.++|+|.=-...+|.
T Consensus        62 a~L~V~dG~~V~~G~~laewD--p~t~pIisE~~G~V~f~dii~G~  105 (190)
T 2auk_A           62 AVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVRFTDMIDGQ  105 (190)
T ss_dssp             CEESSCTTCEECTTCEEEECC--SSEEEEECSSCEEEEEESCCBTT
T ss_pred             CEEEecCCCEEcCCCEEEEEc--CcCCcEEeccccEEEEEeccCCc
Confidence            367899999999999999774  67899999999999554455443

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=95.83  E-value=0.0076  Score=30.84  Aligned_cols=26  Identities=46%  Similarity=0.537  Sum_probs=23.9

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|.|.++++++|+.+..|+.|+.||
T Consensus        52 ~~G~v~~~~~~~G~~v~~G~~l~~i~   77 (77)
T 1dcz_A           52 TDGKVEKVLVKERDAVQGGQGLIKIG   77 (77)
T ss_dssp             SSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred             CCEEEEEEecCCcCEECCCCEEEEEC
Confidence            46999999999999999999999875

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.61  E-value=0.017  Score=35.56  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=28.8

Q ss_pred             EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440         15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI   53 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~   53 (64)
                      .+++++|+.|++||.||+-.      +|.|.++|++...
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~   54 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV   54 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEee
Confidence            57899999999999999866      8999999998543

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.51  E-value=0.015  Score=31.61  Aligned_cols=27  Identities=22%  Similarity=0.572  Sum_probs=24.2

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|.|. +++++|+.|..|+.|+.++..
T Consensus        61 ~~G~V~-~~v~~G~~V~~G~~l~~i~~~   87 (100)
T 2dn8_A           61 ERGRVK-YIKRPGAVLEAGCVVARLELD   87 (100)
T ss_dssp             SSEEEE-ECSCTTCEECSSCEEEEECCS
T ss_pred             CCEEEE-EEeCCCCEECCCCEEEEEEcC
Confidence            469999 999999999999999999754

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=95.42  E-value=0.022  Score=32.73  Aligned_cols=29  Identities=38%  Similarity=0.543  Sum_probs=26.0

Q ss_pred             CeEEEEEEEcCCCC-EEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGD-AVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~-~V~~g~~l~~ie~~k   37 (64)
                      ..|+|.++++++|+ .|..|+.|+.|+...
T Consensus        77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~  106 (128)
T 1y8o_B           77 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE  106 (128)
T ss_dssp             SCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred             CCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence            46999999999998 899999999998653

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=95.37  E-value=0.0059  Score=32.19  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=25.4

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|..|++|+.|+..
T Consensus        46 ~~G~V~~~~v~~G~~V~~G~~l~~i~~~   73 (85)
T 2k7v_A           46 FAGVVKELKVNVGDKVKTGSLIMIFEVE   73 (85)
T ss_dssp             SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred             CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence            4589999999999999999999999864

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.20  E-value=0.014  Score=31.80  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=26.0

Q ss_pred             CeEEEEEEEcCCCCEE-cCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAV-APGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V-~~g~~l~~ie~~k   37 (64)
                      ..|+|.++++++|+.| ..|++|+.|+...
T Consensus        57 ~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~   86 (98)
T 2dnc_A           57 DDGILAKIVVEEGSKNIRLGSLIGLIVEEG   86 (98)
T ss_dssp             SCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred             CCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence            4699999999999998 9999999998653

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=95.20  E-value=0.017  Score=32.08  Aligned_cols=28  Identities=29%  Similarity=0.416  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGD-AVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~-~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+ .|..|+.|+.|+..
T Consensus        57 ~~G~V~~i~v~~G~~~V~~G~~l~~i~~~   85 (108)
T 2dne_A           57 EECYMAKILVAEGTRDVPIGAIICITVGK   85 (108)
T ss_dssp             SSEEEEECSSCTTCCSEETTCEEEEEESC
T ss_pred             CCEEEEEEEeCCCCeeecCCCEEEEEecC
Confidence            46999999999999 89999999999864

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=94.97  E-value=0.017  Score=34.52  Aligned_cols=41  Identities=27%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             CeEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI   53 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~   53 (64)
                      ..|++..+. +..|.+-.    |+.++...++   ..++||++|+|..+
T Consensus        19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v   63 (161)
T 1f3z_A           19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKI   63 (161)
T ss_dssp             SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEE
T ss_pred             CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEE
Confidence            468888876 67777666    8999987775   47899999999887

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=94.49  E-value=0.0066  Score=32.76  Aligned_cols=26  Identities=35%  Similarity=0.581  Sum_probs=0.0

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|.|.++++++|+.|..|+.|+.||
T Consensus        69 ~~G~V~~~~v~~G~~V~~G~~L~~ie   94 (94)
T 2jku_A           69 KTGTVKSVHCQAGDTVGEGDLLVELE   94 (94)
T ss_dssp             --------------------------
T ss_pred             CCEEEEEEcCCCcCEECCCCEEEEEC
Confidence            46999999999999999999999875

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=94.48  E-value=0.0045  Score=32.26  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.+..|+.|+.++.
T Consensus        52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~   78 (80)
T 1pmr_A           52 ADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence            469999999999999999999998764

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=94.43  E-value=0.051  Score=35.98  Aligned_cols=34  Identities=21%  Similarity=0.429  Sum_probs=29.6

Q ss_pred             EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI   53 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~   53 (64)
                      ..+++++|+.|++||.||+-.      +|.|..+|+|...
T Consensus        61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~   94 (352)
T 2xhc_A           61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDV   94 (352)
T ss_dssp             CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEE
T ss_pred             CEEEecCCCEEcCCCEEEEec------cEEEecceEEEee
Confidence            367899999999999999977      8999999999544

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=94.28  E-value=0.024  Score=29.85  Aligned_cols=28  Identities=18%  Similarity=0.367  Sum_probs=24.8

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ..|+|.+++ +.|+.|..|+.|+.|+...
T Consensus        49 ~~G~v~~~~-~~G~~V~~G~~l~~i~~~~   76 (84)
T 2kcc_A           49 ERGRVKYIK-RPGAVLEAGCVVARLELDD   76 (84)
T ss_dssp             SSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred             CCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence            469999999 9999999999999997643

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=93.98  E-value=0.025  Score=33.77  Aligned_cols=42  Identities=17%  Similarity=0.185  Sum_probs=33.3

Q ss_pred             CCeEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440          8 MTEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI   53 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~   53 (64)
                      -..|++..+ .+..|.+..    |+.++...+.   ..++||++|+|..+
T Consensus        18 P~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v   63 (162)
T 1ax3_A           18 PITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNV   63 (162)
T ss_dssp             CCSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEEC
T ss_pred             cCceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEE
Confidence            346999986 677887766    8999987763   47899999999876

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=93.68  E-value=0.062  Score=29.02  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=25.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ..|.|.+++++.|+.|..|+.|+.|....
T Consensus        58 ~~G~V~~~~v~~G~~V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           58 KDGTVKKVFYREGAQANRHTPLVEFEEEE   86 (99)
T ss_dssp             SCEEEEEESCCTTEEECTTCBCEEECCCC
T ss_pred             CCeEEEEEEcCCCCEECCCCEEEEEECCC
Confidence            46999999999999999999999997643

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=93.60  E-value=0.093  Score=37.09  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=24.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ..|+|.++++++|+.|..|++|+.||
T Consensus       656 ~~G~v~~i~~~~G~~v~~g~~l~~i~  681 (681)
T 3n6r_A          656 KKGVVAKINASAGNSLAVDDVIMEFE  681 (681)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred             CCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence            46999999999999999999999986

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=92.93  E-value=0.011  Score=30.68  Aligned_cols=28  Identities=18%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.+..|+.|+.++..
T Consensus        51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~   78 (81)
T 1gjx_A           51 VAGVVKEVKVKVGDKISEGGLIVVVEAE   78 (81)
T ss_dssp             CSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred             CCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence            3589999999999999999999998753

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=92.87  E-value=0.088  Score=28.81  Aligned_cols=22  Identities=9%  Similarity=0.215  Sum_probs=19.7

Q ss_pred             EEEecCCCeEEEEEecCCCCccc
Q psy10440         40 MSFETEEEGILAKILVPENTTDG   62 (64)
Q Consensus        40 ~~i~ap~~G~i~~~~~~~g~~~v   62 (64)
                      ..|.|+.+|+|.++++++|+. |
T Consensus         2 ~~v~a~~~G~V~~v~v~~G~~-V   23 (116)
T 2k32_A            2 VIIKPQVSGVIVNKLFKAGDK-V   23 (116)
T ss_dssp             EEECCSSCEEEEEECSCTTSE-E
T ss_pred             eEEeCcCCEEEEEEECCCcCE-E
Confidence            578999999999999999984 5

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=92.16  E-value=0.3  Score=30.11  Aligned_cols=34  Identities=12%  Similarity=0.123  Sum_probs=26.9

Q ss_pred             CeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         28 DVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        28 ~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ..-+.++.. ....|.|+.+|+|.++++++|+. |.
T Consensus        12 ~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~-V~   45 (277)
T 2f1m_A           12 ELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSD-IE   45 (277)
T ss_dssp             EEEEEEECS-EEEEECCSSCEEEEEECSCTTCE-EC
T ss_pred             EEEEEEEee-eEEEEEccccEEEEEEEcCCCCE-ec
Confidence            344567765 46789999999999999999984 53

>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A

Probab=91.80  E-value=0.1  Score=34.12  Aligned_cols=39  Identities=8%  Similarity=-0.001  Sum_probs=31.0

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEE---ecCCCC
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKI---LVPENT   59 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~---~~~~g~   59 (64)
                      .++.|+.|++||+|+.+-.    .+++||.+|.+.-.   .+.+|+
T Consensus       280 ~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~p~p~V~~G~  321 (350)
T 2bco_A          280 NVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVFPNRHVAIGQ  321 (350)
T ss_dssp             TCCBTEECCTTCEEEEETT----EEEECSSSSCEEESCCTTCCTTS
T ss_pred             cccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEecCCCCCCCc
Confidence            3688999999999999854    78899999987665   345555

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=91.72  E-value=0.16  Score=31.04  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      |+-.++++++||+|++||.|+++.-
T Consensus       115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~  139 (183)
T 3our_B          115 GEGFTRIAEEGQTVKAGDTVIEFDL  139 (183)
T ss_dssp             TTTEEECSCTTCEECTTCEEEEECH
T ss_pred             CccceEEEeCcCEEcCCCEEEEECH
Confidence            4557889999999999999999964

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=91.51  E-value=0.2  Score=29.61  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+.++++||+|++||.|+++..
T Consensus        91 F~~~V~~Gd~V~~G~~L~~~d~  112 (154)
T 2gpr_A           91 FESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             EEECCCTTCEECTTCEEEEECH
T ss_pred             eEEEEcCCCEEcCCCEEEEECH
Confidence            4579999999999999999974

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=91.06  E-value=0.25  Score=36.97  Aligned_cols=27  Identities=37%  Similarity=0.617  Sum_probs=24.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|+|.++++++|+.|..||+|+.|+.
T Consensus      1121 ~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A         1121 FDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp             SSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred             CCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence            469999999999999999999999975

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=90.83  E-value=0.077  Score=31.39  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=32.7

Q ss_pred             CeEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKI   53 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~   53 (64)
                      ..|++..+. +..|.+-.    |+.++...++   ..++||++|+|..+
T Consensus        14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v   58 (154)
T 2gpr_A           14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTA   58 (154)
T ss_dssp             SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEEC
T ss_pred             CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEE
Confidence            458888865 77777766    8999988775   48999999999874

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=90.82  E-value=0.044  Score=36.92  Aligned_cols=28  Identities=21%  Similarity=0.442  Sum_probs=0.0

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..|+|.++++++|+.|..|++|+.|+..
T Consensus        52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~   79 (428)
T 3dva_I           52 VKGKVLEILVPEGTVATVGQTLITLDAP   79 (428)
T ss_dssp             ----------------------------
T ss_pred             CCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence            4699999999999999999999999754

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=90.68  E-value=0.26  Score=29.30  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+.++++||+|++||.|+++..
T Consensus        96 F~~~V~~Gd~V~~G~~L~~~d~  117 (161)
T 1f3z_A           96 FKRIAEEGQRVKVGDTVIEFDL  117 (161)
T ss_dssp             EEECSCTTCEECTTCEEEEECH
T ss_pred             cEEEEeCcCEECCCCEEEEECH
Confidence            3448999999999999999974

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=90.44  E-value=0.35  Score=31.04  Aligned_cols=23  Identities=26%  Similarity=0.410  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.+++|+++++++.
T Consensus        72 ~v~~~~~dG~~v~~g~~v~~i~G   94 (284)
T 1qpo_A           72 RVLDRVEDGARVPPGEALMTLEA   94 (284)
T ss_dssp             EEEEECCTTCEECTTCEEEEEEE
T ss_pred             EEEEEcCCCCEecCCcEEEEEEE
Confidence            37899999999999999999985

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=90.37  E-value=0.37  Score=36.41  Aligned_cols=25  Identities=40%  Similarity=0.679  Sum_probs=23.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ..|+|.++++++|+.|..||+|+.|
T Consensus      1211 ~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A         1211 KSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEE
T ss_pred             CCeEEEEEEeCCcCEeCCCCEEEEe
Confidence            4699999999999999999999986

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=89.82  E-value=0.33  Score=31.16  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.6

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.+++|+++++++.
T Consensus        74 v~~~~~dG~~v~~g~~v~~i~G   95 (286)
T 1x1o_A           74 FTPLVAEGARVAEGTEVARVRG   95 (286)
T ss_dssp             EEESSCTTCEECTTCEEEEEEE
T ss_pred             EEEEcCCCCCccCCCEEEEEEE
Confidence            6799999999999999999985

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=89.54  E-value=0.46  Score=30.10  Aligned_cols=22  Identities=27%  Similarity=0.323  Sum_probs=20.4

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|.+++|+.|.+|++|++++.
T Consensus        60 v~~~~~eG~~v~~g~~~~~v~G   81 (273)
T 2b7n_A           60 CVQTIKDKERFKPKDALMEIRG   81 (273)
T ss_dssp             EEEECCTTCEECTTCEEEEEEE
T ss_pred             EEEEcCCCCCcCCCCEEEEEEe
Confidence            5799999999999999999986

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=89.49  E-value=0.37  Score=31.16  Aligned_cols=22  Identities=18%  Similarity=0.516  Sum_probs=20.5

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.+++|++|++++.
T Consensus        77 v~~~~~dG~~v~~g~~v~~i~G   98 (287)
T 3tqv_A           77 ITWLYSDAQKVPANARIFELKG   98 (287)
T ss_dssp             EEESSCTTCEECTTCEEEEEEE
T ss_pred             EEEEeCCCCEeeCCCEEEEEEE
Confidence            5899999999999999999985

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=89.43  E-value=0.42  Score=30.46  Aligned_cols=34  Identities=12%  Similarity=0.084  Sum_probs=27.0

Q ss_pred             eEEEEecC-ceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         29 VLCEIQTD-KAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        29 ~l~~ie~~-k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .-+.++.. .....|.|+.+|+|.++++++|++ |.
T Consensus        46 ~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~-V~   80 (359)
T 3lnn_A           46 LPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDE-VK   80 (359)
T ss_dssp             EEEEEECCSSSEEEECCSSCEEEEECCSCTTCE-EC
T ss_pred             EEEEEEECCCcEEEEeccCCEEEEEEEcCCCCE-Ec
Confidence            34566653 557899999999999999999984 53

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=88.96  E-value=0.43  Score=31.06  Aligned_cols=22  Identities=23%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.|++|++|++++.
T Consensus        86 v~~~~~dG~~v~~g~~v~~i~G  107 (300)
T 3l0g_A           86 YEIHKKDGDITGKNSTLVSGEA  107 (300)
T ss_dssp             EEECCCTTCEECSSCEEEEEEE
T ss_pred             EEEEeCCCCEeeCCCEEEEEEE
Confidence            5899999999999999999985

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=88.80  E-value=0.24  Score=29.45  Aligned_cols=22  Identities=36%  Similarity=0.564  Sum_probs=19.4

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+.+++.||+|++||.|+++.-
T Consensus        96 F~~~V~~Gd~V~~G~~L~~~d~  117 (162)
T 1ax3_A           96 FTSFVSEGDRVEPGQKLLEVDL  117 (162)
T ss_dssp             EEESCCCCSEECSEEEEEEECH
T ss_pred             cEEEEeCCCEEcCCCEEEEECH
Confidence            4569999999999999999964

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=88.75  E-value=0.31  Score=31.31  Aligned_cols=22  Identities=23%  Similarity=0.361  Sum_probs=20.5

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ++|++++|+.|++|++|++++.
T Consensus        73 v~~~~~dG~~v~~g~~v~~i~G   94 (285)
T 1o4u_A           73 SKFNVEDGEYLEGTGVIGEIEG   94 (285)
T ss_dssp             EEESCCTTCEEESCEEEEEEEE
T ss_pred             EEEEcCCCCCcCCCCEEEEEEE
Confidence            6799999999999999999985

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=88.58  E-value=0.46  Score=30.85  Aligned_cols=22  Identities=32%  Similarity=0.866  Sum_probs=20.5

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.|.+|++|++++.
T Consensus        88 v~~~~~dG~~v~~g~~l~~v~G  109 (298)
T 3gnn_A           88 VDWRHREGDRMSADSTVCELRG  109 (298)
T ss_dssp             EEESSCTTCEECTTCEEEEEEE
T ss_pred             EEEEcCCCCEecCCCEEEEEEe
Confidence            5799999999999999999985

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=88.26  E-value=0.49  Score=30.46  Aligned_cols=22  Identities=27%  Similarity=0.641  Sum_probs=20.6

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ++|++++|+.|.+|++|++++.
T Consensus        87 v~~~~~dG~~v~~g~~~~~v~G  108 (296)
T 1qap_A           87 LTWHVDDGDAIHANQTVFELQG  108 (296)
T ss_dssp             EEESCCTTCEECTTCEEEEEEE
T ss_pred             EEEEcCCCCEecCCCEEEEEEE
Confidence            6799999999999999999986

>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*

Probab=88.18  E-value=0.29  Score=29.41  Aligned_cols=23  Identities=13%  Similarity=0.084  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +.++.|+.||.|++||.|+.+-.
T Consensus        82 L~~i~V~~G~~V~~Gq~IG~vG~  104 (182)
T 3it5_A           82 MDQIQVSNGQQVSADTKLGVYAG  104 (182)
T ss_dssp             EESCCCCTTCEECTTCEEEEECS
T ss_pred             CCccccCCCCEEcCCCEEEeecC
Confidence            34567999999999999999975

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=88.12  E-value=0.51  Score=30.95  Aligned_cols=23  Identities=26%  Similarity=0.835  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      -.+|++++|+.|.+|++|++++.
T Consensus       109 ~v~~~~~dG~~v~~g~~l~~v~G  131 (320)
T 3paj_A          109 SIEWHVQDGDTLTPNQTLCTLTG  131 (320)
T ss_dssp             EEEESSCTTCEECTTCEEEEEEE
T ss_pred             EEEEEeCCCCEecCCCEEEEEEe
Confidence            36899999999999999999985

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=86.29  E-value=0.57  Score=30.14  Aligned_cols=22  Identities=27%  Similarity=0.616  Sum_probs=20.3

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ++|++++|+.|.+|++|++++.
T Consensus        73 v~~~~~dG~~v~~g~~l~~v~G   94 (299)
T 2jbm_A           73 VSWFLPEGSKLVPVARVAEVRG   94 (299)
T ss_dssp             EEESSCTTCEECSSEEEEEEEE
T ss_pred             EEEEcCCCCCCCCCCEEEEEEE
Confidence            5689999999999999999985

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=86.29  E-value=0.81  Score=28.06  Aligned_cols=28  Identities=29%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             EcCCCCEEcCCCeEEEEecCceEEEEecCCCeEE
Q psy10440         17 LKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGIL   50 (64)
Q Consensus        17 ~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i   50 (64)
                      +|++||.|++|+.|+.      -....|-.+|++
T Consensus       143 ~V~eGd~V~~Ge~L~D------G~~~~~~~~~~~  170 (193)
T 2xha_A          143 RIKKGKEVKQGEMLAE------ARKFFAKVSGRV  170 (193)
T ss_dssp             TSCTTCEECTTCEEEC------CEEEECSSCEEE
T ss_pred             ccCCCCEECCCCCccc------CccccccccceE
Confidence            7899999999999886      456778888887

>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1

Probab=84.70  E-value=1  Score=30.58  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=22.7

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +-=+.++++.||.|++||+|++|-++.
T Consensus       375 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~  401 (433)
T 1brw_A          375 AVGIVLHKKIGDRVQKGEALATIHSNR  401 (433)
T ss_dssp             TCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             CcCeeEeccCCCEECCCCeEEEEEcCC
Confidence            344678999999999999999997653

>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}

Probab=84.43  E-value=1  Score=30.53  Aligned_cols=27  Identities=37%  Similarity=0.500  Sum_probs=22.6

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      +-=+.++++.||.|++||+|++|-++.
T Consensus       367 ~~Gi~~~~k~g~~v~~g~~l~~i~~~~  393 (423)
T 2dsj_A          367 GVGVYLLKKPGDRVERGEALALVYHRR  393 (423)
T ss_dssp             TCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred             CcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence            334678999999999999999997653

>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B

Probab=84.39  E-value=0.7  Score=29.10  Aligned_cols=25  Identities=16%  Similarity=0.280  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         12 TIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        12 ~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      -+.++.|+.|+.|++||.|+.+-..
T Consensus       131 HL~~i~Vk~Gd~V~~Gq~IG~vG~t  155 (245)
T 3tuf_B          131 SLSEVSVEQGDKVKQNQVIGKSGKN  155 (245)
T ss_dssp             EESEESCCTTCEECTTCEEEECBCC
T ss_pred             cCCccccCCCCEECCCCEEEEeCCc
Confidence            3457889999999999999998754

>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}

Probab=83.77  E-value=0.8  Score=29.30  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +.++.|+.||.|++||.|+.+.+.
T Consensus       229 L~~i~V~~G~~V~~Gq~IG~vG~t  252 (282)
T 2hsi_A          229 LSKIDVKLGQQVPRGGVLGKVGAT  252 (282)
T ss_dssp             ESEECSCTTCEECTTCEEEECCCT
T ss_pred             CCccccCCcCEECCCCEEEEECCC
Confidence            446789999999999999998653

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=83.65  E-value=1.2  Score=34.42  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             EEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCC
Q psy10440         15 KWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPEN   58 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g   58 (64)
                      .+++++|+.|++||.|++...  -+.+|.|.++|+|.=....+|
T Consensus      1002 ~l~v~~g~~V~~g~~ia~wDp--~~~piise~~G~v~f~d~~~g 1043 (1407)
T 3lu0_D         1002 VLAKGDGEQVAGGETVANWDP--HTMPVITEVSGFVRFTDMIDG 1043 (1407)
T ss_dssp             EESSCSSCEECTTCEEEECCS--SCCCEECSSCEEEEEESCCBT
T ss_pred             EEEEcCCCEecCCCEEEEEec--CceeEEeccceEEEEeeeccC
Confidence            578999999999999999865  478899999999954334444

>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A

Probab=83.11  E-value=1.3  Score=30.35  Aligned_cols=26  Identities=15%  Similarity=0.193  Sum_probs=22.2

Q ss_pred             EEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440         12 TIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus        12 ~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      -=+.++++.||.|++||+|++|-++.
T Consensus       411 ~Gi~l~~k~G~~V~~g~~l~~i~~~~  436 (474)
T 1uou_A          411 VGAELLVDVGQRLRRGTPWLRVHRDG  436 (474)
T ss_dssp             CEEEECSCTTCEECTTCEEEEEEESS
T ss_pred             CceEEEccCCCEECCCCeEEEEEcCC
Confidence            34678999999999999999997643

>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}

Probab=83.04  E-value=1.1  Score=30.53  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=22.6

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..+-=+.++++.||.|++||+|++|-.
T Consensus       376 d~~~Gi~l~~~~G~~V~~g~~l~~i~~  402 (436)
T 3h5q_A          376 DLAVGIVLNKKIGDKVEEGESLLTIHS  402 (436)
T ss_dssp             CTTCEEEESCCTTCEECTTSEEEEEEE
T ss_pred             CCCCceEEecCCcCEeCCCCeEEEEeC
Confidence            344457889999999999999999973

>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A

Probab=82.98  E-value=0.9  Score=29.44  Aligned_cols=24  Identities=21%  Similarity=0.243  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEecC
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +.++.|+.|+.|++||.|+.+.+.
T Consensus       236 Ls~i~Vk~Gq~V~~GqvIG~vG~T  259 (291)
T 1qwy_A          236 NNRLTVSAGDKVKAGDQIAYSGST  259 (291)
T ss_dssp             ESEECCCTTCEECTTCEEEECCCC
T ss_pred             CCccccCCcCEECCCCEEEEECCC
Confidence            456789999999999999998653

>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1

Probab=80.73  E-value=2.4  Score=25.75  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=18.2

Q ss_pred             CCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440         27 GDVLCEIQTDKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        27 g~~l~~ie~~k~~~~i~ap~~G~i~~~~   54 (64)
                      |+.++..=++   -.|+||++|+|..+.
T Consensus        62 GdG~AI~P~~---g~v~AP~dG~V~~vf   86 (183)
T 3our_B           62 GDGIAIKPTG---NKMVAPVNGTIGKIF   86 (183)
T ss_dssp             CEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred             cCeEEEEcCC---CEEEeCCCeEEEEEC
Confidence            6666665443   379999999998764

>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}

Probab=80.54  E-value=1.2  Score=28.04  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=19.9

Q ss_pred             EEEE-EcCCCCEEcCCCeEEEEecC
Q psy10440         13 IVKW-LKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus        13 i~~w-~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +.++ .|+.||.|++||.|+.+...
T Consensus       178 L~~~~~V~~G~~V~~Gq~IG~vG~t  202 (252)
T 3nyy_A          178 LDSYAELEKGDPVKAGDLLGYMGDS  202 (252)
T ss_dssp             ESEECSCCTTCEECTTCEEEECBCC
T ss_pred             CCCCCcCCCCCEECCCCEEEEECCC
Confidence            4455 79999999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	64
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-17
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	3e-17
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-16
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	6e-16
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	2e-15
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	6e-12
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-11
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-10
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	1e-09
d1vf7a_	237	f.46.1.1 (A:) Multidrug resistance protein MexA do	0.004

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 66.7 bits (163), Expect = 2e-17
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P L  ++ + T+  W KK GDAV   +VL EI+TDK V+      +GIL  +L  E TT
Sbjct: 7  VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 3e-17
 Identities = 37/64 (57%), Positives = 49/64 (76%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P+LSPTMT GT+ +W KK G+ ++ GD+L EI+TDKA + FE +EEG LAKILVPE T 
Sbjct: 10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR 69

Query: 61 DGKV 64
          D  +
Sbjct: 70 DVPL 73

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 63.6 bits (155), Expect = 3e-16
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P +   + EG IVKW  K GD V   DVLCE+Q DKAV+   +  +G + +ILVPE T 
Sbjct: 6  LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 6e-16
 Identities = 17/60 (28%), Positives = 34/60 (56%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +  +   + E T+ +W  KEGD V+  D +CE+Q+DKA ++  +  +G++ K+    +  
Sbjct: 9  LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.4 bits (149), Expect = 2e-15
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           P+   ++ +GT+  W KK G+AV   +++ +I+TDK VM    E +G++A+I+  E  T
Sbjct: 6  APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 52.9 bits (127), Expect = 6e-12
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P +        I+      GD +A  D L  ++TDKA M    E  G++ ++ V     
Sbjct: 7  VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (119), Expect = 7e-11
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 1  MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          +P +     E  + + + K GD VA    L  ++ DKA M       G++ ++ V     
Sbjct: 7  VPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 64

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 48.7 bits (116), Expect = 2e-10
 Identities = 11/52 (21%), Positives = 24/52 (46%)

Query: 9  TEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
           +G +++ L K GD +     L  +++ KA M   + + G++  + V     
Sbjct: 11 GDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK 62

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 46.8 bits (111), Expect = 1e-09
 Identities = 16/50 (32%), Positives = 23/50 (46%)

Query: 11 GTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTT 60
          GT+ K L KEGD V  G  +  ++  K         +G + K+LV E   
Sbjct: 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA 66

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 237

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 31.2 bits (69), Expect = 0.004
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 9  TEGTIVKWLKKEGDAVAPGDVLCEIQTDKA 38
            G I+K L KEG  V  G  L +I     
Sbjct: 22 VNGIILKRLFKEGSDVKAGQQLYQIDPATY 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	64
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.87
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.87
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.86
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.86
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.81
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.79
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.72
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.55
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	98.73
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	98.67
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	98.09
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	97.58
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	97.49
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	97.46
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	97.4
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	97.31
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	97.01
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	96.96
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	96.79
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	96.54
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	95.84
d1qpoa2	115	Quinolinic acid phosphoribosyltransferase (Nicotin	95.39
d1qapa2	122	Quinolinic acid phosphoribosyltransferase (Nicotin	94.78
d1brwa3	103	Pyrimidine nucleoside phosphorylase {Bacillus stea	94.62
d1o4ua2	103	Quinolinic acid phosphoribosyltransferase (Nicotin	94.08
d1uoua3	105	Thymidine phosphorylase {Human (Homo sapiens) [Tax	93.75
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	92.95
d2gpra_	154	Glucose permease IIa domain, IIa-glc {Mycoplasma c	92.64
d1gpra_	158	Glucose permease IIa domain, IIa-glc {Bacillus sub	92.55
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	92.45
d2tpta3	105	Thymidine phosphorylase {Escherichia coli [TaxId:	92.3
d1e2wa2	64	Cytochrome f, small domain {Chlamydomonas reinhard	90.58
d1ci3m2	62	Cytochrome f, small domain {Phormidium laminosum [	88.97
d1hcza2	63	Cytochrome f, small domain {Turnip (Brassica rapa)	83.88
d1tu2b2	66	Cytochrome f, small domain {Anabaena sp., strain P	83.29
d2f3ga_	150	Glucose-specific factor III (glsIII) {Escherichia	81.9

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.2e-22  Score=112.15  Aligned_cols=64  Identities=58%  Similarity=0.930  Sum_probs=60.8

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++.+|+..|++
T Consensus        10 mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~v   73 (102)
T d1y8ob1          10 LPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPL   73 (102)
T ss_dssp             CCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEET
T ss_pred             CCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcC
Confidence            7999999999999999999999999999999999999999999999999999999999744654

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.87  E-value=1.5e-22  Score=109.08  Aligned_cols=63  Identities=32%  Similarity=0.621  Sum_probs=60.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+ .|++
T Consensus         6 ~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd-~v~~   68 (79)
T d1ghja_           6 APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLS   68 (79)
T ss_dssp             CCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECT
T ss_pred             cCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCC-EECC
Confidence            79999999999999999999999999999999999999999999999999999999999 4654

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.86  E-value=8.6e-23  Score=110.24  Aligned_cols=63  Identities=46%  Similarity=0.805  Sum_probs=60.2

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|++|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |++
T Consensus         6 ~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~-v~~   68 (80)
T d1laba_           6 LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATV   68 (80)
T ss_dssp             CSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSE-ECS
T ss_pred             CCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCE-ECC
Confidence            799999999999999999999999999999999999999999999999999999999994 653

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.7e-22  Score=107.67  Aligned_cols=63  Identities=29%  Similarity=0.552  Sum_probs=60.1

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||+++.++.+|+|.+|++++||.|++||+||++|++|+..+|+||++|+|.++++++|+. |++
T Consensus         9 lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~-v~~   71 (87)
T d1k8ma_           9 LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYV   71 (87)
T ss_dssp             CCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECT
T ss_pred             CCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCE-ECC
Confidence            799999999999999999999999999999999999999999999999999999999994 653

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.2e-22  Score=108.66  Aligned_cols=63  Identities=40%  Similarity=0.654  Sum_probs=60.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      ||++++++.+|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|++ |++
T Consensus         7 ~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~-v~~   69 (80)
T d1pmra_           7 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTS   69 (80)
T ss_dssp             CCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECS
T ss_pred             CCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCE-ECC
Confidence            799999999999999999999999999999999999999999999999999999999994 654

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=1.6e-19  Score=96.92  Aligned_cols=59  Identities=22%  Similarity=0.402  Sum_probs=55.3

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      ||+++.   +|+|.+|++++||.|++||.|+.+|++|+..+++||.+|+|.++++++|+. |+
T Consensus         6 ~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~-V~   64 (79)
T d1iyua_           6 VPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LK   64 (79)
T ss_dssp             CCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EE
T ss_pred             CCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCE-EC
Confidence            688883   699999999999999999999999999999999999999999999999994 64

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.79  E-value=2.3e-20  Score=100.68  Aligned_cols=62  Identities=24%  Similarity=0.337  Sum_probs=58.0

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      +|+++ ++.+++|++|++++||.|++||+|+++|++|+..+++||.+|+|.++++++|+ .+++
T Consensus         7 ~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~-~v~~   68 (81)
T d1gjxa_           7 VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISE   68 (81)
T ss_dssp             CCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECS
T ss_pred             CCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCC-EECC
Confidence            69999 47899999999999999999999999999999999999999999999999998 4653

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2.5e-19  Score=96.34  Aligned_cols=61  Identities=25%  Similarity=0.339  Sum_probs=56.4

Q ss_pred             CCCCCCCCCeEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCccccC
Q psy10440          1 MPSLSPTMTEGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGKV   64 (64)
Q Consensus         1 ~p~~~~~~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~v   64 (64)
                      +|+++.  .+++|++|++++||.|++||+|+++|++|+..+++||.+|+|.++++++|+. |++
T Consensus         7 ~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~-V~~   67 (80)
T d1qjoa_           7 VPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKT   67 (80)
T ss_dssp             CCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECT
T ss_pred             CCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCE-ECC
Confidence            688885  4799999999999999999999999999999999999999999999999994 653

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.72  E-value=1.2e-17  Score=89.05  Aligned_cols=53  Identities=30%  Similarity=0.453  Sum_probs=50.5

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .|+|.+|++++||.|++||.|+.+|+||+..+|+||++|+|.++++++|+. |.
T Consensus        16 ~G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~-V~   68 (77)
T d1dcza_          16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQ   68 (77)
T ss_dssp             SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CC
T ss_pred             CcEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCE-EC
Confidence            589999999999999999999999999999999999999999999999994 54

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=4.6e-15  Score=79.48  Aligned_cols=49  Identities=27%  Similarity=0.421  Sum_probs=45.9

Q ss_pred             EEEEcCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      .++++++||.|++||.|+.+|+||+..+|+||.+|+|.++++++|+. |.
T Consensus        23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~-V~   71 (80)
T d1bdoa_          23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VE   71 (80)
T ss_dssp             SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-EC
T ss_pred             CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCE-EC
Confidence            36889999999999999999999999999999999999999999984 54

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=98.73  E-value=1.7e-08  Score=57.32  Aligned_cols=45  Identities=16%  Similarity=0.269  Sum_probs=38.9

Q ss_pred             EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      |.|..+. .+.|+.+++|+.++.||+.|+..+|+||++|+|++++.
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            3444443 48999999999999999999999999999999999864

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=98.67  E-value=2.6e-08  Score=56.76  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             EEEEEEE-cCCCCEEcCCCeEEEEecCceEEEEecCCCeEEEEEec
Q psy10440         11 GTIVKWL-KKEGDAVAPGDVLCEIQTDKAVMSFETEEEGILAKILV   55 (64)
Q Consensus        11 g~i~~w~-v~~G~~V~~g~~l~~ie~~k~~~~i~ap~~G~i~~~~~   55 (64)
                      |.|..+. .+.|+.|++|+.++.||+.|+..+++||++|+|++++-
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~   81 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT   81 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeehh
Confidence            3444443 58999999999999999999999999999999999864

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.09  E-value=7e-07  Score=52.79  Aligned_cols=27  Identities=41%  Similarity=0.594  Sum_probs=25.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ..|.|.+++|++|+.|++||+|+.|++
T Consensus        22 v~G~V~~v~V~~G~~VkkGq~L~~ld~   48 (237)
T d1vf7a_          22 VNGIILKRLFKEGSDVKAGQQLYQIDP   48 (237)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred             cCEEEEEEECCCcCEECCCCEEEEEeh
Confidence            469999999999999999999999987

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=5.7e-05  Score=39.28  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=24.9

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEe
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQ   34 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie   34 (64)
                      ...|+|.++++++|+.|..||+|+.||
T Consensus        54 ~~~G~v~~i~v~~G~~V~~G~~L~~ie   80 (80)
T d1bdoa_          54 DKSGTVKAILVESGQPVEFDEPLVVIE   80 (80)
T ss_dssp             SSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred             CCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence            356999999999999999999999986

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.49  E-value=5.6e-05  Score=39.07  Aligned_cols=30  Identities=23%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.+|++++|+.|..||+|+.||...
T Consensus        47 ~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~   76 (79)
T d1iyua_          47 PKAGVVKSVSVKLGDKLKEGDAIIELEPAA   76 (79)
T ss_dssp             SSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred             ccccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence            346999999999999999999999998754

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00014  Score=38.21  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=27.2

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.++++++|+.|..|++|+.|+.+.
T Consensus        53 ~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~   82 (87)
T d1k8ma_          53 RYDGVIKKLYYNLDDIAYVGKPLVDIETEA   82 (87)
T ss_dssp             SSCEEEEEECCCSSCEECTTSEEEEEECSC
T ss_pred             CCCEEEEEEEeCCCCEECCCCEEEEEEcCC
Confidence            457999999999999999999999998764

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=7e-05  Score=38.77  Aligned_cols=30  Identities=17%  Similarity=0.284  Sum_probs=26.9

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.++++++|+.|..|++|+.||.+-
T Consensus        49 ~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg   78 (80)
T d1qjoa_          49 PFAGVVKELKVNVGDKVKTGSLIMIFEVEG   78 (80)
T ss_dssp             SSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred             CeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence            356999999999999999999999998753

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.31  E-value=0.00021  Score=36.86  Aligned_cols=29  Identities=31%  Similarity=0.603  Sum_probs=26.0

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ...|+|.++++++|+.|..|++|+.|+..
T Consensus        50 ~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~   78 (79)
T d1ghja_          50 EADGVIAEIVKNEGDTVLSGELLGKLTEG   78 (79)
T ss_dssp             SSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred             ceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence            45699999999999999999999999753

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=97.01  E-value=0.00032  Score=35.87  Aligned_cols=25  Identities=48%  Similarity=0.571  Sum_probs=23.5

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEE
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEI   33 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~i   33 (64)
                      ..|.|.++++++|+.|..||+|++|
T Consensus        52 ~~G~V~~i~v~~G~~V~~G~~L~~i   76 (77)
T d1dcza_          52 TDGKVEKVLVKERDAVQGGQGLIKI   76 (77)
T ss_dssp             SSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred             CCEEEEEEeeCCCCEECCCCEEEEe
Confidence            4699999999999999999999987

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.96  E-value=4.7e-05  Score=39.56  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=26.4

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ..+|+|.++++++|+.|+.|+.|+.||..
T Consensus        50 ~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~   78 (80)
T d1laba_          50 PVKGKVLEILVPEGTVATVGQTLITLDAP   78 (80)
T ss_dssp             SSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred             CCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence            45799999999999999999999999864

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.79  E-value=7.6e-05  Score=38.71  Aligned_cols=30  Identities=17%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ...|+|.++++++|+.|..|++|+.+|+..
T Consensus        50 ~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g   79 (81)
T d1gjxa_          50 EVAGVVKEVKVKVGDKISEGGLIVVVEAEG   79 (81)
T ss_dssp             CCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred             eeeEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence            456999999999999999999999998753

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00014  Score=37.71  Aligned_cols=28  Identities=21%  Similarity=0.421  Sum_probs=25.4

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      ...|+|.++++++|+.|..|++|+.|+.
T Consensus        51 ~~~G~l~~i~v~~Gd~v~~G~~l~~i~e   78 (80)
T d1pmra_          51 SADGILDAVLEDEGTTVTSRQILGRLRE   78 (80)
T ss_dssp             CSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred             cCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence            4579999999999999999999999874

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0062  Score=32.50  Aligned_cols=29  Identities=38%  Similarity=0.518  Sum_probs=25.0

Q ss_pred             CCeEEEEEEEcCCCC-EEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGD-AVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~-~V~~g~~l~~ie~~   36 (64)
                      ...|.|.++++++|+ .|..|++|+.|...
T Consensus        54 ~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~   83 (102)
T d1y8ob1          54 QEEGYLAKILVPEGTRDVPLGTPLCIIVEK   83 (102)
T ss_dssp             CSCEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred             CCcEEEEEEEEccCCEEEcCCCEEEEEecC
Confidence            456999999999997 59999999999543

>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.39  E-value=0.011  Score=31.94  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.8

Q ss_pred             EEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         11 GTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        11 g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +.-..|++++|+.|++|+.|++++.
T Consensus        70 ~i~~~~~~~DG~~v~~G~~I~~i~G   94 (115)
T d1qpoa2          70 GYRVLDRVEDGARVPPGEALMTLEA   94 (115)
T ss_dssp             SEEEEEECCTTCEECTTCEEEEEEE
T ss_pred             ccceeeecCCCCEEecceeEEEEec
Confidence            3447899999999999999999975

>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.78  E-value=0.016  Score=31.55  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCEEcCCCeEEEEec
Q psy10440         13 IVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        13 i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      =.+|++++|+.|++|+.|+.++.
T Consensus        79 ~~~~~~~DG~~v~~G~~i~~i~G  101 (122)
T d1qapa2          79 RLTWHVDDGDAIHANQTVFELQG  101 (122)
T ss_dssp             EEEESCCTTCEECTTCEEEEEEE
T ss_pred             EEEecccCccEEecCceEEEEEE
Confidence            37899999999999999999975

>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Pyrimidine nucleoside phosphorylase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.62  E-value=0.02  Score=30.34  Aligned_cols=30  Identities=27%  Similarity=0.411  Sum_probs=24.5

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecCc
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTDK   37 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~k   37 (64)
                      ++.+-=..++++.||.|++||+|+++-+++
T Consensus        42 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   71 (103)
T d1brwa3          42 IDLAVGIVLHKKIGDRVQKGEALATIHSNR   71 (103)
T ss_dssp             CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred             cCcccceEEeccCCCEEcCCCeEEEEEcCC
Confidence            344555789999999999999999997654

>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.08  E-value=0.02  Score=30.07  Aligned_cols=22  Identities=23%  Similarity=0.361  Sum_probs=20.4

Q ss_pred             EEEEcCCCCEEcCCCeEEEEec
Q psy10440         14 VKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        14 ~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      .+|++++|+.|++|+.|++++.
T Consensus        61 v~~~~~dG~~v~~g~~I~~i~G   82 (103)
T d1o4ua2          61 SKFNVEDGEYLEGTGVIGEIEG   82 (103)
T ss_dssp             EEESCCTTCEEESCEEEEEEEE
T ss_pred             eeeecCCCCEEEcCceEEEEec
Confidence            6899999999999999999875

>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.042  Score=29.21  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=23.3

Q ss_pred             CeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          9 TEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         9 ~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      +.+-=..++++.||.|++||+|+.|-++
T Consensus        41 D~~vGi~l~~k~Gd~V~~G~~l~~ih~~   68 (105)
T d1uoua3          41 RLGVGAELLVDVGQRLRRGTPWLRVHRD   68 (105)
T ss_dssp             CSSCEEEECSCTTCEECTTCEEEEEEES
T ss_pred             CccccEEEeecCCCEEcCCCeEEEEECC
Confidence            3444578899999999999999999654

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.95  E-value=0.032  Score=31.88  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=24.6

Q ss_pred             EEEecCceEEEEecCCCeEEEEEecCCCCcccc
Q psy10440         31 CEIQTDKAVMSFETEEEGILAKILVPENTTDGK   63 (64)
Q Consensus        31 ~~ie~~k~~~~i~ap~~G~i~~~~~~~g~~~v~   63 (64)
                      +.|++.+ ..+|+|+.+|+|.++++++|+. |.
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~-Vk   38 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSD-VK   38 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEE-EC
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCE-EC
Confidence            3566644 5689999999999999999984 53

>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Mycoplasma capricolum [TaxId: 2095]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Mycoplasma capricolum [TaxId: 2095]

Probab=92.64  E-value=0.023  Score=32.34  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=23.0

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +|+-.++++++||+|++||+|+++.-
T Consensus        87 ~G~gF~~~v~~Gd~V~~G~~L~~~D~  112 (154)
T d2gpra_          87 DGNGFESFVTQDQEVNAGDKLVTVDL  112 (154)
T ss_dssp             TTCSEEECCCTTCEECTTCEEEEECH
T ss_pred             CCceeEEEecCCCEEcCCCEEEEEcH
Confidence            46668899999999999999999964

>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]

Probab=92.55  E-value=0.059  Score=30.62  Aligned_cols=26  Identities=35%  Similarity=0.519  Sum_probs=22.8

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +|+-.++++++||+|++||+|+++..
T Consensus        89 ~G~gF~~~v~~Gd~Vk~G~~L~~~D~  114 (158)
T d1gpra_          89 KGEGFTSFVSEGDRVEPGQKLLEVDL  114 (158)
T ss_dssp             TTTTEEECCCTTCEECTTCEEEEECH
T ss_pred             CCcceEEEEcCCCEEcCCCEEEEeCH
Confidence            45567899999999999999999965

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=0.063  Score=30.27  Aligned_cols=26  Identities=31%  Similarity=0.468  Sum_probs=22.4

Q ss_pred             eEEEEEEEcCCCCEEcCCCeEEEEec
Q psy10440         10 EGTIVKWLKKEGDAVAPGDVLCEIQT   35 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~g~~l~~ie~   35 (64)
                      +|+-.++++++||+|++||+|+++..
T Consensus        81 ~G~gF~~~v~~Gd~V~~G~~L~~~D~  106 (150)
T d2f3ga_          81 KGEGFKRIAEEGQRVKVGDTVIEFDL  106 (150)
T ss_dssp             TTTTEEECSCTTCEECTTCEEEEECH
T ss_pred             CCcceEEEecCCCEECCCCEEEEEcH
Confidence            34557899999999999999999965

>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Pyrimidine nucleoside phosphorylase C-terminal domain
family: Pyrimidine nucleoside phosphorylase C-terminal domain
domain: Thymidine phosphorylase
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.023  Score=30.24  Aligned_cols=29  Identities=17%  Similarity=0.133  Sum_probs=23.7

Q ss_pred             CCeEEEEEEEcCCCCEEcCCCeEEEEecC
Q psy10440          8 MTEGTIVKWLKKEGDAVAPGDVLCEIQTD   36 (64)
Q Consensus         8 ~~~g~i~~w~v~~G~~V~~g~~l~~ie~~   36 (64)
                      ++.+-=..++++.||.|++||+|+.|-++
T Consensus        42 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~   70 (105)
T d2tpta3          42 IDYSVGFTDMARLGDQVDGQRPLAVIHAK   70 (105)
T ss_dssp             CCSSCEEESCCCTTCEEBTTBCSEEEEES
T ss_pred             CCCcccEEEEecCCCEEcCCCeEEEEECC
Confidence            33445578899999999999999999764

>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=90.58  E-value=0.032  Score=27.28  Aligned_cols=17  Identities=29%  Similarity=0.433  Sum_probs=14.2

Q ss_pred             EEEcCCCCEEcCCCeEE
Q psy10440         15 KWLKKEGDAVAPGDVLC   31 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~   31 (64)
                      +++|++||.|++||.|-
T Consensus        45 ~l~V~eGd~V~~G~~LT   61 (64)
T d1e2wa2          45 DLIVKEGQTVQADQPLT   61 (64)
T ss_dssp             CBCCCTTCEECTTCBCB
T ss_pred             eEEECCCCEEeCCCccc
Confidence            45789999999999874

>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Phormidium laminosum [TaxId: 32059]

Probab=88.97  E-value=0.044  Score=26.41  Aligned_cols=17  Identities=35%  Similarity=0.601  Sum_probs=14.0

Q ss_pred             EEEcCCCCEEcCCCeEE
Q psy10440         15 KWLKKEGDAVAPGDVLC   31 (64)
Q Consensus        15 ~w~v~~G~~V~~g~~l~   31 (64)
                      ++.|++||.|++||.|.
T Consensus        43 ~l~V~eGd~V~aG~~LT   59 (62)
T d1ci3m2          43 ELIVSEGEEVAAGAALT   59 (62)
T ss_dssp             CBCCCTTCEECTTCBSB
T ss_pred             EEEECCCCEEeCCCccc
Confidence            45789999999999864

>d1hcza2 b.84.2.2 (A:168-230) Cytochrome f, small domain {Turnip (Brassica rapa) [TaxId: 3711]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Turnip (Brassica rapa) [TaxId: 3711]

Probab=83.88  E-value=0.12  Score=25.25  Aligned_cols=15  Identities=27%  Similarity=0.430  Sum_probs=12.6

Q ss_pred             EEcCCCCEEcCCCeE
Q psy10440         16 WLKKEGDAVAPGDVL   30 (64)
Q Consensus        16 w~v~~G~~V~~g~~l   30 (64)
                      ..|.+||.|+.||+|
T Consensus        46 LiVseG~~V~adqpL   60 (63)
T d1hcza2          46 LLVSEGESIKLDQPL   60 (63)
T ss_dssp             BCCCTTCEECTTCBS
T ss_pred             EEEcCCCEEECCCcc
Confidence            568899999999876

>d1tu2b2 b.84.2.2 (B:170-235) Cytochrome f, small domain {Anabaena sp., strain PCC 7120 [TaxId: 1167]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Anabaena sp., strain PCC 7120 [TaxId: 1167]

Probab=83.29  E-value=0.12  Score=25.44  Aligned_cols=15  Identities=47%  Similarity=0.749  Sum_probs=11.5

Q ss_pred             EEcCCCCEEcCCCeE
Q psy10440         16 WLKKEGDAVAPGDVL   30 (64)
Q Consensus        16 w~v~~G~~V~~g~~l   30 (64)
                      +.|.+||.|+.||+|
T Consensus        48 LiVseG~~VkadqpL   62 (66)
T d1tu2b2          48 LIVSEGQAVTAGDAL   62 (66)
T ss_dssp             BSCCTTCEECTTCBS
T ss_pred             EEEcCCCEEecCCcc
Confidence            467788888888875

>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose-specific factor III (glsIII)
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=1  Score=25.01  Aligned_cols=41  Identities=27%  Similarity=0.392  Sum_probs=27.0

Q ss_pred             eEEEEEEEcCCCCEEcC----CCeEEEEecCceEEEEecCCCeEEEEEe
Q psy10440         10 EGTIVKWLKKEGDAVAP----GDVLCEIQTDKAVMSFETEEEGILAKIL   54 (64)
Q Consensus        10 ~g~i~~w~v~~G~~V~~----g~~l~~ie~~k~~~~i~ap~~G~i~~~~   54 (64)
                      +|++.. +-+.-|.+-+    |+.++..-++   ..++||++|+|..+.
T Consensus         9 ~G~vi~-L~~v~D~vFs~~~mG~GvAI~P~~---~~v~AP~dG~V~~v~   53 (150)
T d2f3ga_           9 SGEIVN-IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIF   53 (150)
T ss_dssp             SEEEEC-GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred             CceEEE-cccCCChHHhcCCccCeEEEEeCC---CeEEeecCEEEEEEC
Confidence            355555 2244455444    7888877554   379999999998763