Psyllid ID: psy10447

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKTN
ccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccccccHHHHHHHHHHHHHcc
ccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHHHHHcc
mtdihchtlsiesfDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATdgveaqyikdeilppffkNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKTN
mtdihchtlsiesfdsVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIankvgaseiinrvvddlkdenEQYRKMVMESIEKTN
MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKTN
***IHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDD********************
****HCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT*
MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKTN
***IHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTDIHCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVxxxxxxxxxxxxxxxxxxxxxTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query166 2.2.26 [Sep-21-2011]
O57683 1307 Splicing factor 3B subuni N/A N/A 0.933 0.118 0.909 1e-81
Q99NB9 1304 Splicing factor 3B subuni yes N/A 0.933 0.118 0.909 1e-81
O75533 1304 Splicing factor 3B subuni yes N/A 0.933 0.118 0.909 1e-81
Q10178 1205 U2 snRNP component prp10 yes N/A 0.933 0.128 0.606 3e-56
P49955 971 U2 snRNP component HSH155 yes N/A 0.975 0.166 0.470 7e-43
>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1 Back     alignment and function desciption
 Score =  301 bits (771), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 141/155 (90%), Positives = 148/155 (95%)

Query: 10  SIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS 69
            IESFDSVLKPLWKGIR HRGKGLAAFLKAIGYLIPLMDAEYANYYT+EVMLILIREFQS
Sbjct: 723 GIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQS 782

Query: 70  PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVE 129
           PDEEMKKIVLKVVKQCC TDGVEA YIK EILPPFFK+FW HRMALDRRNYRQLVDTTVE
Sbjct: 783 PDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVE 842

Query: 130 IANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
           +ANKVGA+EII+R+VDDLKDE EQYRKMVME+IEK
Sbjct: 843 LANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEK 877
Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Xenopus laevis (taxid: 8355)
>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1 Back     alignment and function description
>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3 Back     alignment and function description
>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp10 PE=1 SV=3 Back     alignment and function description
>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSH155 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
332021647 1317 Splicing factor 3B subunit 1 [Acromyrmex 0.933 0.117 0.967 5e-84
307182141 1267 Splicing factor 3B subunit 1 [Camponotus 0.933 0.122 0.967 5e-84
322788435 1303 hypothetical protein SINV_80122 [Solenop 0.933 0.118 0.967 6e-84
307192374 1304 Splicing factor 3B subunit 1 [Harpegnath 0.933 0.118 0.967 6e-84
340712061 1316 PREDICTED: splicing factor 3B subunit 1- 0.933 0.117 0.961 1e-83
383857066 1316 PREDICTED: splicing factor 3B subunit 1- 0.933 0.117 0.961 1e-83
156542977 1316 PREDICTED: splicing factor 3B subunit 1- 0.933 0.117 0.961 1e-83
66505925 1315 PREDICTED: splicing factor 3B subunit 1- 0.933 0.117 0.961 1e-83
399108175 1343 splicing factor 3b subunit 1 [Rhyzoperth 0.933 0.115 0.954 1e-83
345489666 1314 PREDICTED: splicing factor 3B subunit 1- 0.933 0.117 0.961 1e-83
>gi|332021647|gb|EGI62006.1| Splicing factor 3B subunit 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  315 bits (806), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 150/155 (96%), Positives = 153/155 (98%)

Query: 10  SIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQS 69
            IESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYT+EVMLILIREFQS
Sbjct: 733 GIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQS 792

Query: 70  PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVE 129
           PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILP FFK+FWNHRMALDRRNYRQLVDTTVE
Sbjct: 793 PDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPHFFKHFWNHRMALDRRNYRQLVDTTVE 852

Query: 130 IANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
           IANKVGASEIINRVVDDLKDENEQYRKMVME+IEK
Sbjct: 853 IANKVGASEIINRVVDDLKDENEQYRKMVMETIEK 887

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307182141|gb|EFN69484.1| Splicing factor 3B subunit 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322788435|gb|EFZ14106.1| hypothetical protein SINV_80122 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307192374|gb|EFN75618.1| Splicing factor 3B subunit 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340712061|ref|XP_003394583.1| PREDICTED: splicing factor 3B subunit 1-like [Bombus terrestris] gi|350398721|ref|XP_003485287.1| PREDICTED: splicing factor 3B subunit 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383857066|ref|XP_003704027.1| PREDICTED: splicing factor 3B subunit 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|156542977|ref|XP_001602756.1| PREDICTED: splicing factor 3B subunit 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|66505925|ref|XP_623732.1| PREDICTED: splicing factor 3B subunit 1-like isoform 1 [Apis mellifera] gi|380030470|ref|XP_003698871.1| PREDICTED: splicing factor 3B subunit 1-like [Apis florea] Back     alignment and taxonomy information
>gi|399108175|gb|AFP20535.1| splicing factor 3b subunit 1 [Rhyzopertha dominica] Back     alignment and taxonomy information
>gi|345489666|ref|XP_001599854.2| PREDICTED: splicing factor 3B subunit 1-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
FB|FBgn0031266 1340 CG2807 [Drosophila melanogaste 0.927 0.114 0.954 1.2e-74
ZFIN|ZDB-GENE-040827-3 1315 sf3b1 "splicing factor 3b, sub 0.927 0.117 0.922 1.6e-72
UNIPROTKB|E1C2C3 1301 SF3B1 "Uncharacterized protein 0.927 0.118 0.915 4.1e-72
UNIPROTKB|F1SMZ9 1303 SF3B1 "Uncharacterized protein 0.927 0.118 0.915 4.2e-72
UNIPROTKB|F1MX61 1304 SF3B1 "Uncharacterized protein 0.927 0.118 0.915 4.2e-72
UNIPROTKB|O75533 1304 SF3B1 "Splicing factor 3B subu 0.927 0.118 0.915 4.2e-72
MGI|MGI:1932339 1304 Sf3b1 "splicing factor 3b, sub 0.927 0.118 0.915 4.2e-72
UNIPROTKB|G3V7T6 1304 Sf3b1 "Splicing factor 3b, sub 0.927 0.118 0.915 4.2e-72
WB|WBGene00011605 1322 T08A11.2 [Caenorhabditis elega 0.921 0.115 0.875 3.3e-68
TAIR|locus:2173333 1269 AT5G64270 [Arabidopsis thalian 0.927 0.121 0.779 1.5e-62
FB|FBgn0031266 CG2807 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 147/154 (95%), Positives = 151/154 (98%)

Query:    11 IESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSP 70
             IESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYT+EVMLILIREFQSP
Sbjct:   757 IESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP 816

Query:    71 DEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEI 130
             DEEMKKIVLKVVKQCCATDGVE QYIK+EILP FFK FWNHRMALDRRNYRQLVDTTVEI
Sbjct:   817 DEEMKKIVLKVVKQCCATDGVEPQYIKEEILPHFFKFFWNHRMALDRRNYRQLVDTTVEI 876

Query:   131 ANKVGASEIINRVVDDLKDENEQYRKMVMESIEK 164
             ANKVGASEIINRVVDDLKDENEQYRKMVME++EK
Sbjct:   877 ANKVGASEIINRVVDDLKDENEQYRKMVMETVEK 910
GO:0005681 "spliceosomal complex" evidence=ISS
GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS
GO:0005686 "U2 snRNP" evidence=ISS;IDA
GO:0071011 "precatalytic spliceosome" evidence=IDA
GO:0071013 "catalytic step 2 spliceosome" evidence=IDA
ZFIN|ZDB-GENE-040827-3 sf3b1 "splicing factor 3b, subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2C3 SF3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMZ9 SF3B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MX61 SF3B1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O75533 SF3B1 "Splicing factor 3B subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1932339 Sf3b1 "splicing factor 3b, subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3V7T6 Sf3b1 "Splicing factor 3b, subunit 1, isoform CRA_b" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
WB|WBGene00011605 T08A11.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2173333 AT5G64270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O75533SF3B1_HUMANNo assigned EC number0.90960.93370.1188yesN/A
Q10178SF3B1_SCHPONo assigned EC number0.60640.93370.1286yesN/A
Q99NB9SF3B1_MOUSENo assigned EC number0.90960.93370.1188yesN/A
O57683SF3B1_XENLANo assigned EC number0.90960.93370.1185N/AN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
COG5181 975 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA 5e-56
>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information 
 Score =  188 bits (478), Expect = 5e-56
 Identities = 71/157 (45%), Positives = 97/157 (61%)

Query: 9   LSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQ 68
             IE FD VL PLW+G   HRGK L +FLKA+G++IPLM  EYA + T+E M I+ REF+
Sbjct: 392 YGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFK 451

Query: 69  SPDEEMKKIVLKVVKQCCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTV 128
           SPDEEMKK +L V + C          ++D++ P FF  FW  R A DRR+Y+Q+V TTV
Sbjct: 452 SPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTV 511

Query: 129 EIANKVGASEIINRVVDDLKDENEQYRKMVMESIEKT 165
            +A   G   +  ++++   DE E YRKM    + + 
Sbjct: 512 ILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRI 548

Length = 975

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 166
KOG0213|consensus 1172 100.0
COG5181 975 HSH155 U2 snRNP spliceosome subunit [RNA processin 100.0
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 96.22
PTZ00429 746 beta-adaptin; Provisional 95.05
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 95.02
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 94.58
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 94.43
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 93.97
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 91.21
PF12719 298 Cnd3: Nuclear condensing complex subunits, C-term 90.55
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 90.27
COG4748365 Uncharacterized conserved protein [Function unknow 88.2
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 87.99
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 86.28
PTZ00429 746 beta-adaptin; Provisional 86.14
PF05004309 IFRD: Interferon-related developmental regulator ( 83.47
KOG3961|consensus262 82.7
PF01602 526 Adaptin_N: Adaptin N terminal region; InterPro: IP 81.99
PF0657595 DUF1132: Protein of unknown function (DUF1132); In 81.76
KOG1060|consensus 968 80.59
PRK09687280 putative lyase; Provisional 80.44
PF01603 409 B56: Protein phosphatase 2A regulatory B subunit ( 80.43
>KOG0213|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.4e-74  Score=544.34  Aligned_cols=161  Identities=77%  Similarity=1.201  Sum_probs=159.8

Q ss_pred             ccCCcchhhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhhHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q psy10447          5 HCHTLSIESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSPDEEMKKIVLKVVKQ   84 (166)
Q Consensus         5 as~PYGIEsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yYt~evm~il~rEF~SPDeEMKkiVLkVv~q   84 (166)
                      |++|||||+||+||+|||+|||+||||+|||||||||||||||||+||+|||+|||.|++|||+||||||||||||||+|
T Consensus       583 aa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~q  662 (1172)
T KOG0213|consen  583 AATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQ  662 (1172)
T ss_pred             hcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccCcchhhHhhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhCHHHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447         85 CCATDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANKVGASEIINRVVDDLKDENEQYRKMVMESIEK  164 (166)
Q Consensus        85 c~~t~gv~~~yir~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~Kvg~~~il~~iv~~lKDesE~~R~M~~eti~k  164 (166)
                      ||.++||+|+|+|.+|+|+||++||+||||+||+||+|||+|||+||+|+|+.++++|+|.+||||+||||+|++||++|
T Consensus       663 cc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~r  742 (1172)
T KOG0213|consen  663 CCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSR  742 (1172)
T ss_pred             HhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q psy10447        165 T  165 (166)
Q Consensus       165 v  165 (166)
                      +
T Consensus       743 i  743 (1172)
T KOG0213|consen  743 I  743 (1172)
T ss_pred             H
Confidence            6

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>COG4748 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG3961|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF06575 DUF1132: Protein of unknown function (DUF1132); InterPro: IPR009509 This family consists of several hypothetical proteins from Neisseria meningitidis Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 4e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
 Score = 70.8 bits (173), Expect = 4e-15
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 27/162 (16%)

Query: 12  ESFDSVLKPLWKG-IRTHRGKGLAAFLKAIGYLIPLMDAEYANYYTKEVMLILIREFQSP 70
             F  ++K L  G   T R      F      +   + AE            L + F++ 
Sbjct: 125 AHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE------------LRQYFRNL 172

Query: 71  DEEMKKIVLKVVKQCCA--TDGVEAQYIKDEILPPFFKNFWNHRMALDRRNYRQL--VDT 126
             +   +V +            +E   +K EI+P F        +A D ++  +L  V+ 
Sbjct: 173 CSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMF------SNLASDEQDSVRLLAVEA 226

Query: 127 TVEIANKVGASEIINRVVDDLK----DENEQYRKMVMESIEK 164
            V IA  +   ++   V+  L+    D++ + R MV +   +
Sbjct: 227 CVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTE 268
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.77
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 97.72
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 97.39
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 97.3
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 97.3
1qgr_A 876 Protein (importin beta subunit); transport recepto 97.21
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 97.18
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 97.05
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.93
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.93
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 96.72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 96.62
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.57
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.52
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.44
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.33
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.32
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 96.3
1qgr_A 876 Protein (importin beta subunit); transport recepto 96.29
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.28
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 96.18
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.99
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.95
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 95.83
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 95.78
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.66
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 95.6
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.54
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 95.43
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 95.27
1wa5_B 530 Importin alpha subunit; nuclear transport/complex, 94.94
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 94.87
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 94.84
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 94.36
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 93.65
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 93.42
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 93.38
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 93.14
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 92.91
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 92.29
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 92.19
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 92.1
1oyz_A 280 Hypothetical protein YIBA; structural genomics, PS 91.22
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 90.66
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 90.1
3fga_B 403 Serine/threonine-protein phosphatase 2A 56 kDa RE 90.08
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 89.71
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 89.6
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 88.2
3tpo_A 529 Importin subunit alpha-2; nuclear import, protein 86.17
2vgl_A 621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 86.1
2jak_A 392 Serine/threonine-protein phosphatase 2A 56 kDa RE 84.16
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 82.26
2x19_B 963 Importin-13; nuclear transport, protein transport; 81.97
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
Probab=97.77  E-value=0.00014  Score=68.36  Aligned_cols=151  Identities=12%  Similarity=0.157  Sum_probs=105.9

Q ss_pred             hhhhhhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChh-----HHhhhHHHHHHHHHhhcC-CCcHHHHHHHHHHHHhh
Q psy10447         12 ESFDSVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAE-----YANYYTKEVMLILIREFQ-SPDEEMKKIVLKVVKQC   85 (166)
Q Consensus        12 EsFd~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~e-----yA~yYt~evm~il~rEF~-SPDeEMKkiVLkVv~qc   85 (166)
                      +..+.++..||.++.......-.+-..|+|.|...+.++     +...|..++++.|.+-++ +++.+.|...|.++.++
T Consensus        82 ~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           82 YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  161 (1230)
T ss_dssp             HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            567788999999987655544445567888888888765     467788999999999999 69999999999999998


Q ss_pred             hcc--cCcchhhHhhhhchHHHHHHH-----HHHhhhh------------------------------hhhhhHHHHHHH
Q psy10447         86 CAT--DGVEAQYIKDEILPPFFKNFW-----NHRMALD------------------------------RRNYRQLVDTTV  128 (166)
Q Consensus        86 ~~t--~gv~~~yir~~i~~~FF~~FW-----~rR~AlD------------------------------r~~~~~vv~TTv  128 (166)
                      +..  +.+.+ |+ +++++.++..++     +|+.|..                              ....+..+++-.
T Consensus       162 ~~~~~~~l~~-~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~  239 (1230)
T 1u6g_C          162 LSRQGGLLVN-FH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIA  239 (1230)
T ss_dssp             HHHTCSSCTT-TH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             HHHhHhHHHH-HH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence            863  44665 54 778888887765     3443320                              011223445555


Q ss_pred             HHHHhhCH------HHHHHHhhcccccchHHHHHHHHHHHhh
Q psy10447        129 EIANKVGA------SEIINRVVDDLKDENEQYRKMVMESIEK  164 (166)
Q Consensus       129 ~lA~Kvg~------~~il~~iv~~lKDesE~~R~M~~eti~k  164 (166)
                      .|+..+|.      .+++..++..+.|+++..|..+++++..
T Consensus       240 ~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~  281 (1230)
T 1u6g_C          240 AISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES  281 (1230)
T ss_dssp             HHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            56654442      4567777777778888888888777654
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.09
d1b3ua_588 Constant regulatory domain of protein phosphatase 96.96
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 96.84
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 96.78
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 96.72
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.54
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 94.41
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.4
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 94.2
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 93.72
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 93.59
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.23
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 92.55
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 92.38
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 92.01
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 91.99
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 91.97
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 91.55
d2vgla_ 584 Adaptin alpha C subunit N-terminal fragment {Mouse 91.33
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 90.23
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 90.09
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 89.95
d1oyza_ 276 Hypothetical protein YibA {Escherichia coli [TaxId 82.76
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 82.29
d2jaka1 343 Serine/threonine-protein phosphatase 2A regulatory 81.8
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 80.14
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.003  Score=48.41  Aligned_cols=145  Identities=12%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             hhhHHHHHHHHhhhcchHHHHHHHHhhhcccCChhHHhhh-HHHHHHHHHhhcCCCcHHHHHHHHHHHHhhhcccCcchh
Q psy10447         16 SVLKPLWKGIRTHRGKGLAAFLKAIGYLIPLMDAEYANYY-TKEVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEAQ   94 (166)
Q Consensus        16 ~VL~plW~Gir~hRGK~LAaFLKaiG~IIPLMD~eyA~yY-t~evm~il~rEF~SPDeEMKkiVLkVv~qc~~t~gv~~~   94 (166)
                      .++++|-+-++..-.....+.+++++++..- +++.+.+- ...++..|..=.+||+++.|+..+..+.+++....-...
T Consensus       230 ~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  308 (434)
T d1q1sc_         230 GVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ  308 (434)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             ccchhcccccccchhhhhhchhhhhhhHHhh-hhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHH
Confidence            4667777777777677778889999998753 44444433 345666788888999999999999999999875544444


Q ss_pred             hH-hhhhchHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh--------hCHHHHHHHhhcccccchHHHHHHHHHHHhhc
Q psy10447         95 YI-KDEILPPFFKNFWNHRMALDRRNYRQLVDTTVEIANK--------VGASEIINRVVDDLKDENEQYRKMVMESIEKT  165 (166)
Q Consensus        95 yi-r~~i~~~FF~~FW~rR~AlDr~~~~~vv~TTv~lA~K--------vg~~~il~~iv~~lKDesE~~R~M~~eti~kv  165 (166)
                      ++ +..++|.+++.+= .   .|.+.....+.+-..++..        +.-..+++.|+..+++.++.++..+++++.++
T Consensus       309 ~i~~~~~i~~li~~l~-~---~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~l  384 (434)
T d1q1sc_         309 QVVNHGLVPFLVGVLS-K---ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI  384 (434)
T ss_dssp             HHHHTTCHHHHHHHHH-S---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHh-c---cChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            44 4557777776541 1   1222222233332223322        22223577788889999999999999998753
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure