Psyllid ID: psy10448

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000-

MFPGAKDIDLAIQRGHWEHRRYDRDREEEKKEKEEARIYGQMARQILLALFLGTGDRYLQTSSPKSPSQNLDFTSFLEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNINDEELEKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGRGKTKTKELQEDEDGASGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELFKEEEEQPENTEIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDDDDFDEKNDGDLTGRRSAKKKEMSKQERDRPLPPLLARVGGNIEVLNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERSILSRLAATSTSTNPSSARESALH

ccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEccHHHHHHcccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHcccccccEEEEEEEEEcccccccEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccccccccccccccccccccccEEEEEccHHHHHHHHHHHccccccEEEEEccccccccccHHHHHHHccccccEEEEccccccccHHHHHHHHccccccccccHHHHHHHHccccHHHHHHHHHHHHccHHHcccHHHHHHccccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHccccccccccccccccccccccccEEEEEEcccHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHcccccccEEEEEEccccccccccccccEEEEEccccccccHHHHHHHHHHHccccccccccccccEEEEcccccccccHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccHHcccccHHHHHHHHHccccccccccccccccc

ccccccHHHHHHHcccccHccHHHcccHccccHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccEEEHHHHHHHHHHHEHHHcHHHccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccccEEEEEEEEEEEEcccccEEEEEEEcccccccccccccccccHcHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEcccccccHcccccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEcccccccccccccccccEEEEEEEEEEEEEEccHHHHccccEEEEEEcHHHHHHHcHHHHHHHHHHccccEEEEEccccHHccHHHHHHHHHHccHHHcccHHHHHHHHHcHcHHHHHHHHHHHHcHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccccEEEEEEEEccccccEEEccccEEEEEEcccccccHHHHHHHHHHHcHcccEEEEEccccccHHHcccccccHHHHHHHHHHccccccEEEEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccccccHccccccccccccccccHHHccccEHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccc

MFPGAKDIDLAIQRghwehrrydrdreEEKKEKEEARIYGQMARQILLALFLGtgdrylqtsspkspsqnldftsfleVYHPQLLKSYMKKMnndfteppaleepldeEDKRMARLNrhnindeelEKKYyrygikpewlIANRVinsktlrdgstiylvkwrdlpydkatwedenedipglkESIEFYNKkkskgrgktktkelqededgasgskprrytpppekpttdlrkkyekqppflddtgMQLHAYQLEGINWLRYSWGQNIDTILAdemglgktIQTITFLYSLFkeghckgpflvsaplstiINWEREFetwapdfyvvtyvgdkdcrivlrdhdiswedtanrggkpcrirsstVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNfltpekfndlTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVlknmpskseFIVRVELSPMQKKYYKYILTRNfealnpkgggqqVSLLNIMMDLKkccnhpylfpaaaeeapvqggQYEIQALTRAAGKLVLLSKMLKKLKEdghrygikpewLIANRVinsktlrdgstiylvkwrdlpydkatwedenedipglkeSIEFYNMTKMLDILEDyldgegykyeridgnitgsmrqesidrfnapgasQFVFLLSTrsgglginlatadtviiydsdwnphndiqAFSRAHRIGqqnkyinlatadtviiydsdwnphndiqAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLvvrpgmggkqanftKQELDDILRFGTEELfkeeeeqpenTEIIKQEAENQDPAYWVKLLRHHYEQHQEDVsrtlgkgkrvrkqtddenddddfdekndgdltgrrsakkkemskqerdrplppllarvggnIEVLNQLEELLSDMKSdvsrlpatlarippvaqrlHMSERSILSRLAatststnpssaresalh

mfpgakdidlaiqrghwehrrydrdreeekKEKEEARIYGQMARQILLALFLGTGDRYLQTSSPKSPSQNLDFTSFLEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARlnrhnindeelekkyyrygikpewlianrvinsktlrdgstiylvkwrdlpydkatwedenedipglkesiefynkkkskgrgktktkelqededgasgskprrytpppekpttdlrkkyEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRdhdiswedtanrggkpcrirsSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADvlknmpsksefivrvelspMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKedghrygikpewlianrvinsktlrdgstiylvkwrdlpydkatwedenedipglkESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVvrpgmggkqanftkQELDDILRFGTEELFKEEEEQPENTEIIKQEAENQDPAYWVKLLRHHYEQhqedvsrtlgkgkrvrkqtddenddddfdekndgdltgrrsakkkemskqerdrplppllarvggNIEVLNQLEELLSDMKSDVSRLPATlarippvaqrlHMSERSILSrlaatststnpssaresalh

MFPGAKDIDLAIQRGHWEHRRYDRDReeekkekeeARIYGQMARQILLALFLGTGDRYLQTSSPKSPSQNLDFTSFLEVYHPQLLKSYMKKMNNDFTeppaleepldeedKRMARLNRHNINDEELEKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNkkkskgrgktktkELQEDEDGASGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPlqnnleelfhllnflTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGklvllskmlkklkEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTeelfkeeeeqpenteIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTddenddddfdekndgdLTGRRSAKKKEMSKQERDRPLPPLLARVGGNIEVLNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERSILSRLaatststnpssaRESALH

*************************************IYGQMARQILLALFLGTGDRYL************DFTSFLEVYHPQLLKSY*************************************LEKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWED********************************************************************DDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGT**************************AYWVKLLRHHY*************************************************************LARVGGNIEVLNQLE********************************************************

****AKDIDLAIQRGH***********************GQMARQILLALFLGTGDR**************DFTSFLEVYHPQLLKSYMKKMNNDFTEPPALE*********************ELEKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFY*********************************************YEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANR*****RIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFA*******VKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFE**************NIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAF*****IGQQNKVMIYRFVTR**V*******AKRKMMLTH*******************DDILRFGTE***********************DPAYWVK**********************VRKQTDDENDDDDFDEKND*************************************************************************************************

MFPGAKDIDLAIQRGHWEHR***************ARIYGQMARQILLALFLGTGDRY**********QNLDFTSFLEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNINDEELEKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKK**************************************LRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELF**********EIIKQEAENQDPAYWVKLLRHHYE***************************DFDEKNDGDLTG***************RPLPPLLARVGGNIEVLNQLEELLSDMKSDVSRLPATLARIPPVAQRLHMSERSILSRL******************

*FPGAKDIDLAIQRGHWEHRRYDRDREEEKKEKEEARIYGQMARQILLALFLGTGDRYLQTSSPKSPSQNLDFTSFLEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNINDEELEKKYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGR***************************EKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTAN*******IRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGM*G**ANFTKQELDDILRFGTEELFKEEEEQPENTEIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDDDDFDEKNDGD**************Q*RDRPLPPLLARVGGNIEVLNQLEELLSDMK*******ATLARIPPVAQRLHMSERSILSRL******************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1001	2.2.26 [Sep-21-2011]
O97159		1982	Chromodomain-helicase-DNA	yes	N/A	0.768	0.387	0.585	0.0
Q12873		2000	Chromodomain-helicase-DNA	yes	N/A	0.758	0.379	0.552	0.0
Q14839		1912	Chromodomain-helicase-DNA	no	N/A	0.752	0.393	0.540	0.0
Q6PDQ2		1915	Chromodomain-helicase-DNA	no	N/A	0.752	0.393	0.540	0.0
Q8TDI0		1954	Chromodomain-helicase-DNA	no	N/A	0.672	0.344	0.585	0.0
O16102		892	Chromodomain-helicase-DNA	no	N/A	0.685	0.769	0.512	0.0
Q22516		1787	Chromodomain-helicase-DNA	yes	N/A	0.665	0.372	0.537	0.0
G5EBZ4		1829	Protein let-418 OS=Caenor	no	N/A	0.678	0.371	0.519	0.0
Q9S775		1384	CHD3-type chromatin-remod	yes	N/A	0.585	0.423	0.427	1e-152
Q7KU24		1883	Chromodomain-helicase-DNA	no	N/A	0.641	0.340	0.375	1e-141

>sp\|O97159\|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2	Back alignment and function desciption

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/963 (58%), Positives = 657/963 (68%), Gaps = 194/963 (20%)

Query: 77   LEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRH--------NINDEELEK 128
            L+V+HP +++S+ +K   D  EPP  EE LDE D R  R+ RH        N + E LE+
Sbjct: 543  LDVHHPLMIRSFQRKY--DMEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDDAEVLEE 600

Query: 129  KYYRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEF 188
            ++Y+ G+KPEWLI  RVIN +T RDGST+YLVKWR+LPYDK+TWE+E +DI GL+++I++
Sbjct: 601  RFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDIQGLRQAIDY 660

Query: 189  YNKKKSKGRGKT-------------KTKELQEDEDGASGSKP-RRYTPPPEKPTTDLRKK 234
            Y   ++    +T                ++++DED     +P + YTPPPEKPTTDL+KK
Sbjct: 661  YQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDED-----RPVKHYTPPPEKPTTDLKKK 715

Query: 235  YEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKE 294
            YE QP FL+ TGMQLH YQ+EGINWLRYSWGQ IDTILADEMGLGKTIQT+TFLYSL+KE
Sbjct: 716  YEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKE 775

Query: 295  GHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGG 354
            GHC+GPFLV+ PLST++NWEREFE WAPDFY +TY+GDKD R V+R++++S+E+ A RG 
Sbjct: 776  GHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGS 835

Query: 355  KPCRIRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYS 414
            K  R+R++  KF+VLLTSYELI+ D A LGSI+WAVLVVDEAHRLKSNQSKFF+ L+ Y+
Sbjct: 836  KVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYT 895

Query: 415  IQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPH 474
            I  KLLLTGTPLQNNLEELFHLLNFL+ +KFNDL +FQ EFAD+SKEEQVKRLH++LGPH
Sbjct: 896  IAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPH 955

Query: 475  MLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMM 534
            MLRRLK DVLKNMPSKSEFIVRVELS MQKK+YK+ILT+N+EALN K GG   SL+NIMM
Sbjct: 956  MLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMM 1015

Query: 535  DLKKCCNHPYLFPAAAEEAPVQGGQ-YEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKP 593
            DLKKCCNHPYLFP+AAEEA    G  YEI +LT+AAGKLVLLSKMLK+LK   HR  I  
Sbjct: 1016 DLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLI-- 1073

Query: 594  EWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDI 653
                                                              F  MTKMLDI
Sbjct: 1074 --------------------------------------------------FSQMTKMLDI 1083

Query: 654  LEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTV 713
            LED+L+GE YKYERIDG ITG++RQE+IDRFNAPGA QFVFLLSTR+GGLGINLATADTV
Sbjct: 1084 LEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTV 1143

Query: 714  IIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 773
            IIYDSDWNPHNDIQAFSRAHRIG                                     
Sbjct: 1144 IIYDSDWNPHNDIQAFSRAHRIG------------------------------------- 1166

Query: 774  QQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTE 833
            Q NKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGK ANFTKQELDDILRFGTE
Sbjct: 1167 QANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDILRFGTE 1226

Query: 834  ELFKE-------------------------EEEQPENTEIIK------------------ 850
            +LFKE                         EE++    E +                   
Sbjct: 1227 DLFKEDDKEEAIHYDDKAVAELLDRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEET 1286

Query: 851  ----QEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQT--------------DD 892
                Q+AEN DPAYWVKLLRHHYEQHQEDV R+LGKGKRVRKQ               DD
Sbjct: 1287 EIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVAADTTRDD 1346

Query: 893  ENDDDDFDEKND------------GDLTGRRSAKKKEMSKQER--DRPLPPLLARVGGNI 938
             N  D+  E N              D   +  A++K   + ER  DRPLPPLLARVGGNI
Sbjct: 1347 SNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRRLERRDDRPLPPLLARVGGNI 1406

Query: 939  EVL 941
            EVL
Sbjct: 1407 EVL 1409

Vital role in development. Protein binds to a portion of Hunchback (HB) protein that is critical for repression of bithorax complex (BXC) genes. May also function in polycomb group (PcG) repression of Hox genes.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2

>sp\|Q12873\|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3	Back alignment and function description

>sp\|Q14839\|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=2	Back alignment and function description

>sp\|Q6PDQ2\|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1	Back alignment and function description

>sp\|Q8TDI0\|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=2 SV=1	Back alignment and function description

>sp\|O16102\|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila melanogaster GN=Chd3 PE=2 SV=3	Back alignment and function description

>sp\|Q22516\|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2	Back alignment and function description

>sp\|G5EBZ4\|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1	Back alignment and function description

>sp\|Q9S775\|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1	Back alignment and function description

>sp\|Q7KU24\|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila melanogaster GN=Chd1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1001
350424653		1965	PREDICTED: chromodomain-helicase-DNA-bin	0.759	0.386	0.610	0.0
383851360		1967	PREDICTED: chromodomain-helicase-DNA-bin	0.769	0.391	0.617	0.0
340726708		1974	PREDICTED: LOW QUALITY PROTEIN: chromodo	0.759	0.385	0.610	0.0
110777198		1966	PREDICTED: chromodomain-helicase-DNA-bin	0.759	0.386	0.611	0.0
380020464		1964	PREDICTED: LOW QUALITY PROTEIN: chromodo	0.759	0.386	0.611	0.0
307180140		1960	Chromodomain-helicase-DNA-binding protei	0.769	0.392	0.620	0.0
270013510		1969	hypothetical protein TcasGA2_TC012115 [T	0.768	0.390	0.612	0.0
189240851		1966	PREDICTED: similar to chromodomain helic	0.768	0.391	0.612	0.0
345481883		2009	PREDICTED: chromodomain-helicase-DNA-bin	0.769	0.383	0.611	0.0
157134600		1983	chromodomain helicase DNA binding protei	0.768	0.387	0.602	0.0

>gi\|350424653\|ref\|XP_003493868.1\| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Bombus impatiens]	Back alignment and taxonomy information

 Score = 1134 bits (2932), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 597/978 (61%), Positives = 675/978 (69%), Gaps = 218/978 (22%)

Query: 77   LEVYHPQLLKSYMKKMNNDFTEPPALEEPLDEEDKRMARLNRHNI----NDEELEKKYYR 132
            L+V+HP + ++Y +K   D  EPP LEEPLDE D R+ RL   ++    ++  LE+++YR
Sbjct: 536  LDVFHPLMFRNYSRKY--DMDEPPKLEEPLDESDSRVKRLKEQDVATNRDEYNLEERFYR 593

Query: 133  YGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFY--- 189
            YG++PEWL+ +RVIN +  RDG   YLVKWR+L YD+ATWEDE+EDIPGLK++IE+Y   
Sbjct: 594  YGVRPEWLVVHRVINHRLSRDGRATYLVKWRELGYDQATWEDEHEDIPGLKQAIEYYLDL 653

Query: 190  -----------NKKKSKGRGKTKTKELQEDEDGASGSKPRRYTPPPEKPTTDLRKKYEKQ 238
                        K K     K+KT+EL +DE+      P+RYTPPP+KPTTDL+KKYE+Q
Sbjct: 654  RAANCCDGSSSRKGKKGKGKKSKTRELIDDEE----RTPKRYTPPPDKPTTDLKKKYERQ 709

Query: 239  PPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCK 298
            P +LD TGMQLH YQLEG+NWLRYSWGQ IDTILADEMGLGKTIQTITFLYSL+KEGHCK
Sbjct: 710  PEYLDQTGMQLHPYQLEGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCK 769

Query: 299  GPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCR 358
            GPFLVS PLSTIINWEREFETWAPDFY VTYVGDKD RIV+R++++S+E+ A RGG+  +
Sbjct: 770  GPFLVSVPLSTIINWEREFETWAPDFYCVTYVGDKDSRIVIRENELSFEEGAVRGGRASK 829

Query: 359  IRSSTVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNK 418
            IRS+ +KF+VLLTSYELI+ D A LGSI+WAVLVVDEAHRLKSNQSKFF+ L+ Y+I  K
Sbjct: 830  IRSNQIKFNVLLTSYELISIDSACLGSIDWAVLVVDEAHRLKSNQSKFFRLLASYNIAYK 889

Query: 419  LLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRR 478
            LLLTGTPLQNNLEELFHLLNFL  +KFNDL +FQ EFADISKEEQVK+LH+LLGPHMLRR
Sbjct: 890  LLLTGTPLQNNLEELFHLLNFLCRDKFNDLAAFQNEFADISKEEQVKKLHELLGPHMLRR 949

Query: 479  LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKK 538
            LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKK
Sbjct: 950  LKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKK 1009

Query: 539  CCNHPYLFPAAAEEAPVQ-GGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLI 597
            CCNHPYLFPAA++EAP    G YE  AL +AAGKLVLLSKMLKKL++DGHR  I      
Sbjct: 1010 CCNHPYLFPAASQEAPTAPNGSYETSALIKAAGKLVLLSKMLKKLRDDGHRVLI------ 1063

Query: 598  ANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDY 657
                                                          F  MTKMLDILEDY
Sbjct: 1064 ----------------------------------------------FSQMTKMLDILEDY 1077

Query: 658  LDGEGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYD 717
            L+GEGYKYERIDGNITG+ RQE+IDRFNAPGA QFVFLLSTR+GGLGINLATADTVIIYD
Sbjct: 1078 LEGEGYKYERIDGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYD 1137

Query: 718  SDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNK 777
            SDWNPHNDIQAFSRAHRIG                                     Q NK
Sbjct: 1138 SDWNPHNDIQAFSRAHRIG-------------------------------------QANK 1160

Query: 778  VMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELFK 837
            VMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGK ANF+KQELDDILRFGTEELFK
Sbjct: 1161 VMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFSKQELDDILRFGTEELFK 1220

Query: 838  EEE-------------------------EQPEN--------------------------T 846
            EEE                         EQ EN                          T
Sbjct: 1221 EEEGKEDEAIHYDDKAVAELLDRSKEGIEQKENWANEYLSSFKVASYVTKEGETEEEADT 1280

Query: 847  EIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDDDDFDEKNDGD 906
            EIIKQEAEN DPAYW+KLLRHHYEQ QED++RTLGKGKR+RKQ +           NDG 
Sbjct: 1281 EIIKQEAENTDPAYWIKLLRHHYEQQQEDIARTLGKGKRIRKQVN----------YNDGG 1330

Query: 907  LTGRRSAKKKE-------------------------------------------MSKQER 923
            +TG +S +  +                                             + E+
Sbjct: 1331 VTGDQSTRDDQPWQENLSDYNSDFSAPSDDDKEDDDFDEKGDGDLLSRRSRRRLERRDEK 1390

Query: 924  DRPLPPLLARVGGNIEVL 941
            DRPLPPLLARV GNIEVL
Sbjct: 1391 DRPLPPLLARVNGNIEVL 1408

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|383851360\|ref\|XP_003701201.1\| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340726708\|ref\|XP_003401695.1\| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Bombus terrestris]	Back alignment and taxonomy information

>gi\|110777198\|ref\|XP_624414.2\| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Apis mellifera]	Back alignment and taxonomy information

>gi\|380020464\|ref\|XP_003694103.1\| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Apis florea]	Back alignment and taxonomy information

>gi\|307180140\|gb\|EFN68184.1\| Chromodomain-helicase-DNA-binding protein Mi-2-like protein [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|270013510\|gb\|EFA09958.1\| hypothetical protein TcasGA2_TC012115 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|189240851\|ref\|XP_001812556.1\| PREDICTED: similar to chromodomain helicase-DNA-binding protein 3 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|345481883\|ref\|XP_001605650.2\| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|157134600\|ref\|XP_001663323.1\| chromodomain helicase DNA binding protein [Aedes aegypti] gi\|108870421\|gb\|EAT34646.1\| AAEL013136-PA [Aedes aegypti]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1001
FB\|FBgn0262519		1982	Mi-2 [Drosophila melanogaster	0.493	0.249	0.607	6.7e-259
UNIPROTKB\|F1N3F6		1934	CHD4 "Uncharacterized protein"	0.494	0.255	0.571	1.1e-239
UNIPROTKB\|E2RHA0		1912	CHD4 "Uncharacterized protein"	0.494	0.258	0.571	1.1e-239
UNIPROTKB\|J9NW81		1932	CHD4 "Uncharacterized protein"	0.494	0.256	0.571	1.1e-239
UNIPROTKB\|F1SLR5		1912	CHD4 "Uncharacterized protein"	0.494	0.258	0.571	1.1e-239
UNIPROTKB\|F5GWX5		1905	CHD4 "Chromodomain-helicase-DN	0.494	0.259	0.571	1.1e-239
UNIPROTKB\|Q14839		1912	CHD4 "Chromodomain-helicase-DN	0.494	0.258	0.571	1.1e-239
MGI\|MGI:1344380		1915	Chd4 "chromodomain helicase DN	0.494	0.258	0.571	1.1e-239
UNIPROTKB\|E9PU01		1915	Chd4 "Protein Chd4" [Rattus no	0.494	0.258	0.571	1.1e-239
UNIPROTKB\|F1LM59		1945	Chd4 "Protein Chd4" [Rattus no	0.494	0.254	0.571	1.1e-239

FB\|FBgn0262519 Mi-2 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1634 (580.3 bits), Expect = 6.7e-259, Sum P(4) = 6.7e-259
 Identities = 310/510 (60%), Positives = 384/510 (75%)

Query:    77 LEVYHPQLLKSYMKKMN-NDFTXXXXXXXXXXXXXKRMARLN-----RHNINDEELEKKY 130
             L+V+HP +++S+ +K +  +               KR+ R       + N + E LE+++
Sbjct:   543 LDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDDAEVLEERF 602

Query:   131 YRYGIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYN 190
             Y+ G+KPEWLI  RVIN +T RDGST+YLVKWR+LPYDK+TWE+E +DI GL+++I++Y 
Sbjct:   603 YKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDIQGLRQAIDYYQ 662

Query:   191 XXXXXXXXXXXXXELQEDEDGASGS--------KP-RRYTPPPEKPTTDLRKKYEKQPPF 241
                            ++ + G            +P + YTPPPEKPTTDL+KKYE QP F
Sbjct:   663 DLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAF 722

Query:   242 LDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPF 301
             L+ TGMQLH YQ+EGINWLRYSWGQ IDTILADEMGLGKTIQT+TFLYSL+KEGHC+GPF
Sbjct:   723 LEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPF 782

Query:   302 LVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRS 361
             LV+ PLST++NWEREFE WAPDFY +TY+GDKD R V+R++++S+E+ A RG K  R+R+
Sbjct:   783 LVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRT 842

Query:   362 STVKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLL 421
             +  KF+VLLTSYELI+ D A LGSI+WAVLVVDEAHRLKSNQSKFF+ L+ Y+I  KLLL
Sbjct:   843 TQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLL 902

Query:   422 TGTPXXXXXXXXXXXXXXXTPEKFNDLTSFQAEFADISKEEQVKRLHDLLGPHMLRRLKA 481
             TGTP               + +KFNDL +FQ EFAD+SKEEQVKRLH++LGPHMLRRLK 
Sbjct:   903 TGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKT 962

Query:   482 DVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCN 541
             DVLKNMPSKSEFIVRVELS MQKK+YK+ILT+N+EALN K GG   SL+NIMMDLKKCCN
Sbjct:   963 DVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCN 1022

Query:   542 HPYLFPAAAEEAPVQ-GGQYEIQALTRAAG 570
             HPYLFP+AAEEA    GG YEI +LT+AAG
Sbjct:  1023 HPYLFPSAAEEATTAAGGLYEINSLTKAAG 1052

GO:0016887 "ATPase activity" evidence=IDA;NAS

GO:0005634 "nucleus" evidence=ISS;IDA;NAS

GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS

GO:0004386 "helicase activity" evidence=ISS

GO:0016581 "NuRD complex" evidence=ISS;TAS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS;IDA

GO:0003678 "DNA helicase activity" evidence=ISS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042766 "nucleosome mobilization" evidence=IDA

GO:0003677 "DNA binding" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0031491 "nucleosome binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA

UNIPROTKB\|F1N3F6 CHD4 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RHA0 CHD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9NW81 CHD4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SLR5 CHD4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GWX5 CHD4 "Chromodomain-helicase-DNA-binding protein 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q14839 CHD4 "Chromodomain-helicase-DNA-binding protein 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1344380 Chd4 "chromodomain helicase DNA binding protein 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E9PU01 Chd4 "Protein Chd4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LM59 Chd4 "Protein Chd4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O97159	CHDM_DROME	3, ., 6, ., 4, ., 1, 2	0.5856	0.7682	0.3879	yes	N/A
Q22516	CHD3_CAEEL	3, ., 6, ., 4, ., 1, 2	0.5372	0.6653	0.3726	yes	N/A
Q12873	CHD3_HUMAN	3, ., 6, ., 4, ., 1, 2	0.5521	0.7582	0.3795	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.4.12	0.914
3rd Layer	3.6.4	0.921

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1001
PLN03142		1033	PLN03142, PLN03142, Probable chromatin-remodeling	1e-140
pfam00176		301	pfam00176, SNF2_N, SNF2 family N-terminal domain	2e-92
COG0553		866	COG0553, HepA, Superfamily II DNA/RNA helicases, S	2e-84
smart00487		201	smart00487, DEXDc, DEAD-like helicases superfamily	7e-23
smart00490		82	smart00490, HELICc, helicase superfamily c-termina	8e-23
cd00079		131	cd00079, HELICc, Helicase superfamily c-terminal d	2e-22
pfam00271		78	pfam00271, Helicase_C, Helicase conserved C-termin	4e-22
cd00046		144	cd00046, DEXDc, DEAD-like helicases superfamily	4e-19
pfam06465		66	pfam06465, DUF1087, Domain of Unknown Function (DU	3e-18
pfam08074		174	pfam08074, CHDCT2, CHDCT2 (NUC038) domain	1e-15
smart00298		55	smart00298, CHROMO, Chromatin organization modifie	4e-08
pfam00385		52	pfam00385, Chromo, Chromo (CHRromatin Organisation	1e-07
pfam00385		52	pfam00385, Chromo, Chromo (CHRromatin Organisation	1e-07
smart00298		55	smart00298, CHROMO, Chromatin organization modifie	4e-07
cd00024		55	cd00024, CHROMO, Chromatin organization modifier (	5e-06
cd00024		55	cd00024, CHROMO, Chromatin organization modifier (	2e-05
PRK04914		956	PRK04914, PRK04914, ATP-dependent helicase HepA; V	2e-05
pfam06461		158	pfam06461, DUF1086, Domain of Unknown Function (DU	3e-04

>gnl\|CDD\|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

 Score =  445 bits (1146), Expect = e-140
 Identities = 258/726 (35%), Positives = 360/726 (49%), Gaps = 152/726 (20%)

Query: 191 KKKSKGRGKTKTKE-------LQEDEDGASGSKPRRYTPPPEKPTTDLRKKYEKQPPFLD 243
           K K +GR  +K  E       L+E+EDG  GS   R    P      +R           
Sbjct: 123 KAKGRGRHASKLTEEEEDEEYLKEEEDGLGGSGGTRLLVQPSCIKGKMRD---------- 172

Query: 244 DTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLFKEGHCKGPFLV 303
                   YQL G+NWL   +   I+ ILADEMGLGKT+QTI+ L  L +     GP +V
Sbjct: 173 --------YQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMV 224

Query: 304 SAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSST 363
            AP ST+ NW  E   + P    V + G+ + R   R+      +    G          
Sbjct: 225 VAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEERAHQRE------ELLVAG---------- 268

Query: 364 VKFHVLLTSYELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTG 423
            KF V +TS+E+   +   L    W  +++DEAHR+K+  S   K +  +S   +LL+TG
Sbjct: 269 -KFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITG 327

Query: 424 TPLQNNLEELFHLLNFLTPEKFNDLTSFQAEFADISKEEQ---VKRLHDLLGPHMLRRLK 480
           TPLQNNL EL+ LLNFL PE F+   +F   F    + +Q   V++LH +L P +LRRLK
Sbjct: 328 TPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLK 387

Query: 481 ADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCC 540
           +DV K +P K E I++V +S MQK+YYK +L ++ + +N   GG++  LLNI M L+KCC
Sbjct: 388 SDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN--AGGERKRLLNIAMQLRKCC 445

Query: 541 NHPYLFPAAAEEAPVQGGQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANR 600
           NHPYLF  A    P   G++    L   +GK+VLL K+L KLKE   R  I         
Sbjct: 446 NHPYLFQGAEPGPPYTTGEH----LVENSGKMVLLDKLLPKLKERDSRVLI--------- 492

Query: 601 VINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDG 660
                                                      F  MT++LDILEDYL  
Sbjct: 493 -------------------------------------------FSQMTRLLDILEDYLMY 509

Query: 661 EGYKYERIDGNITGSMRQESIDRFNAPGASQFVFLLSTRSGGLGINLATADTVIIYDSDW 720
            GY+Y RIDGN  G  R  SID FN PG+ +FVFLLSTR+GGLGINLATAD VI+YDSDW
Sbjct: 510 RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDW 569

Query: 721 NPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVMI 780
           NP    Q                                  D+QA  RAHRIGQ+ +V +
Sbjct: 570 NP----QV---------------------------------DLQAQDRAHRIGQKKEVQV 592

Query: 781 YRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKQANFTKQELDDILRFGTEELFKEEE 840
           +RF T  ++EE+V + A +K+ L  LV++ G   +Q    K EL  ++R+G E +F  ++
Sbjct: 593 FRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKD 652

Query: 841 EQPENTEIIKQEAENQDPAYWVKLLRHHYEQHQEDVSRTLGKGKRVRKQTDDENDDDDFD 900
               + +I +  A+ ++       L    ++  ED          ++ + DD  +  DFD
Sbjct: 653 STITDEDIDRIIAKGEEAT---AELDAKMKKFTEDA---------IKFKMDDTAELYDFD 700

Query: 901 EKNDGD 906
           +++D D
Sbjct: 701 DEDDKD 706

Length = 1033

>gnl\|CDD\|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain	Back alignment and domain information

>gnl\|CDD\|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|214692 smart00487, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|197757 smart00490, HELICc, helicase superfamily c-terminal domain	Back alignment and domain information

>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>gnl\|CDD\|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain	Back alignment and domain information

>gnl\|CDD\|238005 cd00046, DEXDc, DEAD-like helicases superfamily	Back alignment and domain information

>gnl\|CDD\|148208 pfam06465, DUF1087, Domain of Unknown Function (DUF1087)	Back alignment and domain information

>gnl\|CDD\|219716 pfam08074, CHDCT2, CHDCT2 (NUC038) domain	Back alignment and domain information

>gnl\|CDD\|214605 smart00298, CHROMO, Chromatin organization modifier domain	Back alignment and domain information

>gnl\|CDD\|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain	Back alignment and domain information

>gnl\|CDD\|215889 pfam00385, Chromo, Chromo (CHRromatin Organisation MOdifier) domain	Back alignment and domain information

>gnl\|CDD\|214605 smart00298, CHROMO, Chromatin organization modifier domain	Back alignment and domain information

>gnl\|CDD\|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>gnl\|CDD\|237991 cd00024, CHROMO, Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>gnl\|CDD\|235319 PRK04914, PRK04914, ATP-dependent helicase HepA; Validated	Back alignment and domain information

>gnl\|CDD\|219039 pfam06461, DUF1086, Domain of Unknown Function (DUF1086)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1001
KOG0384\|consensus		1373		100.0
KOG0385\|consensus		971		100.0
KOG0386\|consensus		1157		100.0
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	100.0
KOG0391\|consensus		1958		100.0
KOG0389\|consensus		941		100.0
KOG0387\|consensus		923		100.0
KOG0388\|consensus		1185		100.0
KOG0392\|consensus		1549		100.0
KOG0383\|consensus		696		100.0
KOG0390\|consensus		776		100.0
KOG1002\|consensus		791		100.0
KOG1015\|consensus		1567		100.0
KOG4439\|consensus		901		100.0
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	100.0
KOG1016\|consensus		1387		100.0
KOG1000\|consensus		689		100.0
PRK04914		956	ATP-dependent helicase HepA; Validated	100.0
KOG1001\|consensus		674		100.0
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	100.0
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	100.0
KOG0298\|consensus		1394		100.0
PRK13766		773	Hef nuclease; Provisional	100.0
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.97
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.97
PHA02558		501	uvsW UvsW helicase; Provisional	99.96
PTZ00110		545	helicase; Provisional	99.92
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	99.92
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	99.92
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	99.91
KOG0354\|consensus		746		99.91
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	99.91
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	99.91
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	99.91
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	99.91
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	99.91
PTZ00424		401	helicase 45; Provisional	99.9
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	99.9
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	99.89
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.88
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.88
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.88
KOG1123\|consensus		776		99.87
KOG0331\|consensus		519		99.87
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.87
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	99.86
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.86
KOG0330\|consensus		476		99.86
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	99.85
PRK10689		1147	transcription-repair coupling factor; Provisional	99.84
PRK13767		876	ATP-dependent helicase; Provisional	99.84
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	99.83
PRK02362		737	ski2-like helicase; Provisional	99.79
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.77
PRK01172		674	ski2-like helicase; Provisional	99.77
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.77
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.77
KOG0345\|consensus		567		99.76
KOG0350\|consensus		620		99.76
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.75
KOG0328\|consensus		400		99.75
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.73
COG4096		875	HsdR Type I site-specific restriction-modification	99.73
PRK00254		720	ski2-like helicase; Provisional	99.72
KOG0335\|consensus		482		99.71
KOG0340\|consensus		442		99.71
KOG0342\|consensus		543		99.7
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.7
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.7
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	99.7
KOG0333\|consensus		673		99.7
KOG0348\|consensus		708		99.69
KOG4284\|consensus		980		99.69
PHA02653		675	RNA helicase NPH-II; Provisional	99.68
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.68
KOG0338\|consensus		691		99.68
PRK09401		1176	reverse gyrase; Reviewed	99.67
KOG0343\|consensus		758		99.67
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	99.66
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	99.66
PRK09200		790	preprotein translocase subunit SecA; Reviewed	99.65
KOG0326\|consensus		459		99.65
PRK14701		1638	reverse gyrase; Provisional	99.64
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	99.62
PRK05580		679	primosome assembly protein PriA; Validated	99.62
COG4889		1518	Predicted helicase [General function prediction on	99.61
KOG0347\|consensus		731		99.6
COG1205		851	Distinct helicase family with a unique C-terminal	99.59
KOG0336\|consensus		629		99.59
COG1204		766	Superfamily II helicase [General function predicti	99.58
KOG0341\|consensus		610		99.58
KOG0346\|consensus		569		99.57
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.57
KOG0332\|consensus		477		99.57
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.55
KOG0344\|consensus		593		99.54
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.54
KOG0339\|consensus		731		99.54
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.53
PRK09694		878	helicase Cas3; Provisional	99.52
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.52
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.51
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.51
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.49
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.47
COG1202		830	Superfamily II helicase, archaea-specific [General	99.46
KOG0327\|consensus		397		99.43
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.42
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	99.39
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	99.38
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.38
smart00490		82	HELICc helicase superfamily c-terminal domain.	99.36
KOG0351\|consensus		941		99.36
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.32
KOG0334\|consensus		997		99.32
KOG0952\|consensus		1230		99.32
PRK05298		652	excinuclease ABC subunit B; Provisional	99.31
PRK12904		830	preprotein translocase subunit SecA; Reviewed	99.3
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.28
PF08074		173	CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR01295	99.27
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.27
PRK13107		908	preprotein translocase subunit SecA; Reviewed	99.21
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.19
KOG0337\|consensus		529		99.17
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.16
KOG0353\|consensus		695		99.15
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	99.14
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.13
KOG0352\|consensus		641		99.1
PF11496		297	HDA2-3: Class II histone deacetylase complex subun	99.1
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	98.98
PF06465		66	DUF1087: Domain of Unknown Function (DUF1087); Int	98.94
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	98.94
PRK12326		764	preprotein translocase subunit SecA; Reviewed	98.94
PF13872		303	AAA_34: P-loop containing NTP hydrolase pore-1	98.91
PF00385		55	Chromo: Chromo (CHRromatin Organisation MOdifier)	98.83
KOG0951\|consensus		1674		98.81
KOG0947\|consensus		1248		98.79
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	98.72
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	98.72
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	98.62
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	98.6
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	98.6
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	98.53
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.52
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	98.5
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	98.48
PRK15483		986	type III restriction-modification system StyLTI en	98.46
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	98.44
KOG0948\|consensus		1041		98.43
KOG0329\|consensus		387		98.4
cd00024		55	CHROMO Chromatin organization modifier (chromo) do	98.36
KOG0949\|consensus		1330		98.33
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.29
KOG0349\|consensus		725		98.28
COG0610		962	Type I site-specific restriction-modification syst	98.24
CHL00122		870	secA preprotein translocase subunit SecA; Validate	98.23
PF06461		145	DUF1086: Domain of Unknown Function (DUF1086); Int	98.19
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	98.17
KOG0950\|consensus		1008		98.08
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	98.06
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	98.04
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	98.04
KOG1513\|consensus		1300		98.04
smart00298		55	CHROMO Chromatin organization modifier domain.	98.01
PF13871		278	Helicase_C_4: Helicase_C-like	98.0
KOG0920\|consensus		924		97.88
KOG0923\|consensus		902		97.87
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	97.77
KOG0922\|consensus		674		97.76
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	97.74
KOG0924\|consensus		1042		97.74
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	97.72
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.6
KOG0953\|consensus		700		97.49
COG3587		985	Restriction endonuclease [Defense mechanisms]	97.44
TIGR02562		1110	cas3_yersinia CRISPR-associated helicase Cas3. The	97.37
KOG0925\|consensus		699		97.33
KOG0390\|consensus		776		97.29
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	97.21
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	97.18
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	97.15
KOG0926\|consensus		1172		97.12
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	96.96
PRK10536		262	hypothetical protein; Provisional	96.82
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	96.67
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.6
smart00490		82	HELICc helicase superfamily c-terminal domain.	96.53
PF13307		167	Helicase_C_2: Helicase C-terminal domain; PDB: 4A1	96.36
KOG1802\|consensus		935		96.35
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	96.29
KOG1131\|consensus		755		96.15
PRK14873		665	primosome assembly protein PriA; Provisional	96.12
KOG1002\|consensus		791		96.0
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	95.92
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	95.85
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.8
KOG1803\|consensus		649		95.78
smart00492		141	HELICc3 helicase superfamily c-terminal domain.	95.75
KOG1911\|consensus		270		95.35
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	95.34
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	95.19
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	95.18
KOG1132\|consensus		945		95.14
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	95.01
PRK07003		830	DNA polymerase III subunits gamma and tau; Validat	94.9
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	94.78
smart00491		142	HELICc2 helicase superfamily c-terminal domain.	94.68
PRK10875		615	recD exonuclease V subunit alpha; Provisional	94.59
KOG2748\|consensus		369		94.56
KOG4150\|consensus		1034		94.46
PLN03025		319	replication factor C subunit; Provisional	94.3
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	94.19
KOG1001\|consensus		674		94.19
TIGR02881		261	spore_V_K stage V sporulation protein K. Members o	94.13
PRK04296		190	thymidine kinase; Provisional	93.94
PRK09112		351	DNA polymerase III subunit delta'; Validated	93.73
PRK14956		484	DNA polymerase III subunits gamma and tau; Provisi	93.7
KOG1133\|consensus		821		93.06
KOG0951\|consensus		1674		92.87
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	92.52
smart00382		148	AAA ATPases associated with a variety of cellular	92.4
PRK14949		944	DNA polymerase III subunits gamma and tau; Provisi	92.37
PRK12323		700	DNA polymerase III subunits gamma and tau; Provisi	92.23
TIGR03015		269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	91.98
TIGR02880		284	cbbX_cfxQ probable Rubsico expression protein CbbX	91.96
CHL00181		287	cbbX CbbX; Provisional	91.67
PRK07764		824	DNA polymerase III subunits gamma and tau; Validat	91.6
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	91.54
PRK05707		328	DNA polymerase III subunit delta'; Validated	91.22
PRK12402		337	replication factor C small subunit 2; Reviewed	91.22
PRK14960		702	DNA polymerase III subunits gamma and tau; Provisi	91.0
PRK14952		584	DNA polymerase III subunits gamma and tau; Provisi	90.61
PRK06526		254	transposase; Provisional	90.42
PRK14958		509	DNA polymerase III subunits gamma and tau; Provisi	90.38
PF13177		162	DNA_pol3_delta2: DNA polymerase III, delta subunit	90.1
PF13245		76	AAA_19: Part of AAA domain	90.09
PHA02533		534	17 large terminase protein; Provisional	90.09
TIGR03420		226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	89.91
TIGR02928		365	orc1/cdc6 family replication initiation protein. M	89.86
PRK07994		647	DNA polymerase III subunits gamma and tau; Validat	89.82
PRK14961		363	DNA polymerase III subunits gamma and tau; Provisi	89.61
PRK14964		491	DNA polymerase III subunits gamma and tau; Provisi	89.61
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	89.44
PRK08181		269	transposase; Validated	89.33
PRK06645		507	DNA polymerase III subunits gamma and tau; Validat	88.6
PRK07940		394	DNA polymerase III subunit delta'; Validated	88.43
PF06733		174	DEAD_2: DEAD_2; InterPro: IPR010614 This represent	88.4
PRK14955		397	DNA polymerase III subunits gamma and tau; Provisi	88.38
KOG0991\|consensus		333		88.31
KOG1805\|consensus		1100		88.11
PRK09111		598	DNA polymerase III subunits gamma and tau; Validat	87.87
PRK14954		620	DNA polymerase III subunits gamma and tau; Provisi	87.85
PRK08451		535	DNA polymerase III subunits gamma and tau; Validat	87.67
PRK14957		546	DNA polymerase III subunits gamma and tau; Provisi	87.51
PRK07471		365	DNA polymerase III subunit delta'; Validated	87.39
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	87.36
PRK08691		709	DNA polymerase III subunits gamma and tau; Validat	87.07
PRK14951		618	DNA polymerase III subunits gamma and tau; Provisi	86.63
PRK14962		472	DNA polymerase III subunits gamma and tau; Provisi	86.61
PRK14963		504	DNA polymerase III subunits gamma and tau; Provisi	86.55
PRK08769		319	DNA polymerase III subunit delta'; Validated	86.52
PRK00440		319	rfc replication factor C small subunit; Reviewed	86.31
PHA02544		316	44 clamp loader, small subunit; Provisional	85.99
PRK08058		329	DNA polymerase III subunit delta'; Validated	85.85
PRK08084		235	DNA replication initiation factor; Provisional	85.74
PRK06871		325	DNA polymerase III subunit delta'; Validated	85.63
PRK14974		336	cell division protein FtsY; Provisional	85.54
PF05621		302	TniB: Bacterial TniB protein; InterPro: IPR008868	85.43
KOG0387\|consensus		923		84.79
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	84.75
PRK08116		268	hypothetical protein; Validated	84.69
PF14061		50	Mtf2_C: Polycomb-like MTF2 factor 2	84.18
PRK14969		527	DNA polymerase III subunits gamma and tau; Provisi	84.15
COG3267		269	ExeA Type II secretory pathway, component ExeA (pr	83.71
PRK14948		620	DNA polymerase III subunits gamma and tau; Provisi	83.64
cd01121		372	Sms Sms (bacterial radA) DNA repair protein. This	83.62
PF13173		128	AAA_14: AAA domain	83.53
PRK00411		394	cdc6 cell division control protein 6; Reviewed	82.83
PRK06090		319	DNA polymerase III subunit delta'; Validated	82.76
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	82.76
KOG0330\|consensus		476		82.68
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	82.44
PRK06647		563	DNA polymerase III subunits gamma and tau; Validat	82.39
TIGR00678		188	holB DNA polymerase III, delta' subunit. At positi	82.37
PRK00149		450	dnaA chromosomal replication initiation protein; R	82.35
PRK07993		334	DNA polymerase III subunit delta'; Validated	82.2
KOG0989\|consensus		346		82.02
TIGR00362		405	DnaA chromosomal replication initiator protein Dna	81.5
PRK14950		585	DNA polymerase III subunits gamma and tau; Provisi	81.5
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	81.29
PRK14953		486	DNA polymerase III subunits gamma and tau; Provisi	81.13
PRK14965		576	DNA polymerase III subunits gamma and tau; Provisi	81.05
KOG0952\|consensus		1230		81.04
PRK08727		233	hypothetical protein; Validated	81.03
PRK14959		624	DNA polymerase III subunits gamma and tau; Provisi	80.87
PRK13889		988	conjugal transfer relaxase TraA; Provisional	80.56
PRK05896		605	DNA polymerase III subunits gamma and tau; Validat	80.51
PF05876		557	Terminase_GpA: Phage terminase large subunit (GpA)	80.4
COG0470		325	HolB ATPase involved in DNA replication [DNA repli	80.33
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	80.29
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	80.17

>KOG0384\|consensus	Back alignment and domain information

Probab=100.00  E-value=3e-138  Score=1227.05  Aligned_cols=700  Identities=46%  Similarity=0.759  Sum_probs=593.3

Q ss_pred             CCCCCceeeeEEEeecccCCCcEEEEEeCCCCCCCccccccCCCCCcchHHHHHHHHhhcccCC-CCcccccccccccCC
Q psy10448        134 GIKPEWLIANRVINSKTLRDGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNKKKSKGR-GKTKTKELQEDEDGA  212 (1001)
Q Consensus       134 ~~~~~~~~~~ri~~~~~~~~~~~~~lvKW~~L~Y~~~tWe~~~~~~~~~~~~i~~y~~~~~~~~-~k~~~~~~~~~~~~~  212 (1001)
                      .+.|+|.+|||||++....+  .+|||||+||||++||||+.....+..+..++.|..+..++. |....          
T Consensus       280 ~~~~dy~~VdRIia~~~~~d--~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~----------  347 (1373)
T KOG0384|consen  280 DLNKDYVIVDRIIAEQTSKD--PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGC----------  347 (1373)
T ss_pred             hhhhhhhhhhhhhhcccCCC--ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCcc----------
Confidence            34699999999999987666  999999999999999999988766778888999987754332 11111          


Q ss_pred             CCCCCCCCCCCCCCCChhhhhhhhcCCCccccCCCcccHHHHHHHHHHHHhhcCCCCeEEEcCCCCCHHHHHHHHHHHHH
Q psy10448        213 SGSKPRRYTPPPEKPTTDLRKKYEKQPPFLDDTGMQLHAYQLEGINWLRYSWGQNIDTILADEMGLGKTIQTITFLYSLF  292 (1001)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~qP~~l~~~~~~L~pyQ~egv~wL~~~~~~~~g~ILADemGLGKTiqaIa~l~~l~  292 (1001)
                            .+     .|..+-+.++++||+|+.  |.+||+||++|+|||.+.|+++.+||||||||||||+|+|+||.+++
T Consensus       348 ------~~-----~~~rp~~~Kle~qp~~~~--g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~  414 (1373)
T KOG0384|consen  348 ------KY-----RPQRPRFRKLEKQPEYKG--GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLF  414 (1373)
T ss_pred             ------cc-----CccchhHHHhhcCccccc--cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHH
Confidence                  11     122234678999999994  69999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEeCcchHHHHHHHHHHHCCCCeEEEEeCCchhhhhhhccccccccccccCCCCccccCCCccccEEEec
Q psy10448        293 KEGHCKGPFLVSAPLSTIINWEREFETWAPDFYVVTYVGDKDCRIVLRDHDISWEDTANRGGKPCRIRSSTVKFHVLLTS  372 (1001)
Q Consensus       293 ~~~~~~~p~LIV~P~sll~qW~~E~~k~~p~~~vv~y~g~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~dVvItT  372 (1001)
                      ......||||||||+|++.+|++||..|+ ++++++|+|+..+|.++++++++....           ....+|+++|||
T Consensus       415 ~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~-----------~~~lkf~~lltT  482 (1373)
T KOG0384|consen  415 HSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSN-----------TKKLKFNALLTT  482 (1373)
T ss_pred             HhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCC-----------ccccccceeehh
Confidence            99999999999999999999999999999 999999999999999999999976432           245689999999


Q ss_pred             HHHHHhhHhhhcCCceeEEEEcCccccCCcccHHHHHHhcccccceEeeecCCCCCCHHHHHHhhhccCCCCCCChhHHH
Q psy10448        373 YELITNDVALLGSIEWAVLVVDEAHRLKSNQSKFFKFLSGYSIQNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDLTSFQ  452 (1001)
Q Consensus       373 Ye~l~~d~~~L~~~~w~~VIiDEAH~lKN~~Sk~~~al~~l~~~~rllLTGTPlqN~l~EL~~LL~fL~p~~f~~~~~F~  452 (1001)
                      |+++.++...|..++|.+++|||||+|||..|+++..|..++..+|||+||||+||++.|||+||+||.|+.|.+..+|.
T Consensus       483 ye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~  562 (1373)
T KOG0384|consen  483 YEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFL  562 (1373)
T ss_pred             hHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccccHHHHHHHHHhhcCCeeeeeeHhHHhhcCCCceEEEEEEcCCHHHHHHHHHHHHHhhhhhCCCCCCccchHHHH
Q psy10448        453 AEFADISKEEQVKRLHDLLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNI  532 (1001)
Q Consensus       453 ~~f~~~~~~~~~~~L~~lL~~~~lRR~K~dv~~~LP~k~e~~v~v~Ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~~ll~~  532 (1001)
                      ..| +...+.++..|+..|.|+||||+|+||.+.||++.|.++.|+||+.|+++|++|+++|+..|.++..+...+++|+
T Consensus       563 ~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNi  641 (1373)
T KOG0384|consen  563 EEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNI  641 (1373)
T ss_pred             Hhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHH
Confidence            999 7788899999999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             HHHHHHHhcCCCCCchhhhcCCcCC----ChhhHHHHHHhhchHHHHHHHHHHHHHcCCccccchhhhHhhhhccccccc
Q psy10448        533 MMDLKKCCNHPYLFPAAAEEAPVQG----GQYEIQALTRAAGKLVLLSKMLKKLKEDGHRYGIKPEWLIANRVINSKTLR  608 (1001)
Q Consensus       533 l~~LRk~c~HP~L~~~~~~~~~~~~----~~~~~~~l~~~S~Kl~~L~klL~~l~~~g~rvli~~e~~~~~~~~~~~~~~  608 (1001)
                      ||.||||||||||+.++++......    ....++.++.+|||+++|+++|.+|++.||+||                  
T Consensus       642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVL------------------  703 (1373)
T KOG0384|consen  642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVL------------------  703 (1373)
T ss_pred             HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEE------------------
Confidence            9999999999999988776543222    245788999999999999999999999999998                  


Q ss_pred             CCccchhhcccCCCcCccccccccccCCCCceeEEEeccHHHHHHHHHHHhhCCCeEEEEEccCCHHHHHHHHHHhcCCC
Q psy10448        609 DGSTIYLVKWRDLPYDKATWEDENEDIPGLKESIEFYNMTKMLDILEDYLDGEGYKYERIDGNITGSMRQESIDRFNAPG  688 (1001)
Q Consensus       609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KvIIFsq~~~~ldiL~~~L~~~gi~~~ridG~~s~~eRq~~Id~Fn~~~  688 (1001)
                                                        |||||++|||||++||..+||+|.||||++.++.|+++||+||+++
T Consensus       704 ----------------------------------IFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~  749 (1373)
T KOG0384|consen  704 ----------------------------------IFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPD  749 (1373)
T ss_pred             ----------------------------------EhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCC
Confidence                                              9999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeccccccccccccCCEEEEecCCCCcchhhhhhhhhhhccCccccccccccceeEeecCCCCCcchhhHhhh
Q psy10448        689 ASQFVFLLSTRSGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKYINLATADTVIIYDSDWNPHNDIQAFSR  768 (1001)
Q Consensus       689 ~~~~v~LlStragg~GINL~~Ad~VIi~D~~WNP~~~iQriGRi~RiGq~~~~LNL~~A~~Vil~Dp~WNP~~d~QA~~R  768 (1001)
                      ++.|||||||||||+||||++||||||||+||||+                                     +|+||++|
T Consensus       750 SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQ-------------------------------------NDLQAqAR  792 (1373)
T KOG0384|consen  750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQ-------------------------------------NDLQAQAR  792 (1373)
T ss_pred             CCceEEEEecccCcccccccccceEEEeCCCCCcc-------------------------------------hHHHHHHH
Confidence            99999999999999999999999999999999999                                     99999999


Q ss_pred             hhhcCCCCeEEEEEEEeCCCHHHHHHHHHHHHHHHHhHhccCCCC----CcCCCCCHHHHHHHHhcChhhhhccccCCc-
Q psy10448        769 AHRIGQQNKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMG----GKQANFTKQELDDILRFGTEELFKEEEEQP-  843 (1001)
Q Consensus       769 ahRiGQ~k~V~Vyrlvt~~TiEE~I~~~~~~K~~l~~~vv~~~~~----~~~~~~~~~el~~ll~~g~~~lf~~~~~~~-  843 (1001)
                      ||||||++.|.||||||++||||.|++++++||.|+++|++.+..    .+...|+++||.+||+|||+++|+++++++ 
T Consensus       793 aHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s  872 (1373)
T KOG0384|consen  793 AHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEES  872 (1373)
T ss_pred             HHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccc
Confidence            999999999999999999999999999999999999999986542    345689999999999999999999976542 


Q ss_pred             ----cchHHHHhhhh-------------------------cCC--------hhHHHHHhHhHhhhhhhhHH-----hhhC
Q psy10448        844 ----ENTEIIKQEAE-------------------------NQD--------PAYWVKLLRHHYEQHQEDVS-----RTLG  881 (1001)
Q Consensus       844 ----~~~~~~~~~~~-------------------------~~~--------~~~~~~~~~~~~~~~~~~~~-----~~~~  881 (1001)
                          .+.+.|.+.++                         ..|        .--|..+.++.....-++..     ..+-
T Consensus       873 ~~~e~DIDeIL~rae~~~t~~~~~~~a~e~ls~fkvad~~~dd~~~~~~~~didwd~iipe~~r~~~~eeer~ke~ee~~  952 (1373)
T KOG0384|consen  873 KFCEMDIDEILERAETRITEESDFMKASELLSQFKVADIKADDPADLEAERDIDWDRIIPEEERERIEEEERLKELEELY  952 (1373)
T ss_pred             cccccCHHHHHhhcccccccccccchhHHHHhhccccccccCChhhhhhhccCChhhhCCHHHHhcchhhhhHHHHHhhc
Confidence                22222322111                         111        12566666654332111111     0111


Q ss_pred             CCcccc--ccC--CCCC--CcccccccCCCCccccccccccchhhhhcCCCCCcchhccCCceeeccchHHHHHHHhhhh
Q psy10448        882 KGKRVR--KQT--DDEN--DDDDFDEKNDGDLTGRRSAKKKEMSKQERDRPLPPLLARVGGNIEVLNQLEELLSDMKSDV  955 (1001)
Q Consensus       882 ~~~~~r--~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  955 (1001)
                      ...|.|  ++.  +++.  .+.+.+++..+..++++.+-...                  ..-++.++.|.+.++|.+++
T Consensus       953 ~~~rer~~k~~~~~~~~~~~~~~~~e~~~~~~~~~r~r~~~~------------------~g~~~~~~~e~eir~~~ra~ 1014 (1373)
T KOG0384|consen  953 SEPRERERKKNRLNDSHGRAESRSVEKSLGKKGKGRWREILK------------------RGEEKGGFTEKEIRRFYRAY 1014 (1373)
T ss_pred             cchhhhhhhccccCcccccccccccccccccccccccccccc------------------cchhhcCCCHHHHHHHHHHH
Confidence            111221  121  1111  11222222222211111110000                  01136889999999999999


Q ss_pred             ccccccccCCChhhhhcccchHH
Q psy10448        956 SRLPATLARIPPVAQRLHMSERS  978 (1001)
Q Consensus       956 ~~~~~~~~~~~~~~~~~~~~~~~  978 (1001)
                      .+||+++.|+..+++++++++.+
T Consensus      1015 ~kfg~~~~r~d~~~~~a~l~~~s 1037 (1373)
T KOG0384|consen 1015 LKFGLPLERLDEIIKDAELVDKS 1037 (1373)
T ss_pred             HHhccHHHHHHHHHhhceeeccC
Confidence            99999999999999999999877

>KOG0385\|consensus	Back alignment and domain information

>KOG0386\|consensus	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0391\|consensus	Back alignment and domain information

>KOG0389\|consensus	Back alignment and domain information

>KOG0387\|consensus	Back alignment and domain information

>KOG0388\|consensus	Back alignment and domain information

>KOG0392\|consensus	Back alignment and domain information

>KOG0383\|consensus	Back alignment and domain information

>KOG0390\|consensus	Back alignment and domain information

>KOG1002\|consensus	Back alignment and domain information

>KOG1015\|consensus	Back alignment and domain information

>KOG4439\|consensus	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1016\|consensus	Back alignment and domain information

>KOG1000\|consensus	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>KOG1001\|consensus	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>KOG0298\|consensus	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>KOG0354\|consensus	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>KOG1123\|consensus	Back alignment and domain information

>KOG0331\|consensus	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>KOG0330\|consensus	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0345\|consensus	Back alignment and domain information

>KOG0350\|consensus	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>KOG0328\|consensus	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG0335\|consensus	Back alignment and domain information

>KOG0340\|consensus	Back alignment and domain information

>KOG0342\|consensus	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>KOG0333\|consensus	Back alignment and domain information

>KOG0348\|consensus	Back alignment and domain information

>KOG4284\|consensus	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>KOG0338\|consensus	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>KOG0343\|consensus	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0326\|consensus	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>KOG0347\|consensus	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>KOG0336\|consensus	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>KOG0341\|consensus	Back alignment and domain information

>KOG0346\|consensus	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>KOG0332\|consensus	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0344\|consensus	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>KOG0339\|consensus	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>KOG0327\|consensus	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0351\|consensus	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>KOG0334\|consensus	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases []	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>KOG0337\|consensus	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>KOG0353\|consensus	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>KOG0352\|consensus	Back alignment and domain information

>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1	Back alignment and domain information

>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>KOG0947\|consensus	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>KOG0948\|consensus	Back alignment and domain information

>KOG0329\|consensus	Back alignment and domain information

>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus	Back alignment and domain information

>KOG0949\|consensus	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0349\|consensus	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>KOG0950\|consensus	Back alignment and domain information

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>KOG1513\|consensus	Back alignment and domain information

>smart00298 CHROMO Chromatin organization modifier domain	Back alignment and domain information

>PF13871 Helicase_C_4: Helicase_C-like	Back alignment and domain information

>KOG0920\|consensus	Back alignment and domain information

>KOG0923\|consensus	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>KOG0922\|consensus	Back alignment and domain information

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>KOG0924\|consensus	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0953\|consensus	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3	Back alignment and domain information

>KOG0925\|consensus	Back alignment and domain information

>KOG0390\|consensus	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>KOG0926\|consensus	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A	Back alignment and domain information

>KOG1802\|consensus	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>KOG1131\|consensus	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG1002\|consensus	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG1803\|consensus	Back alignment and domain information

>smart00492 HELICc3 helicase superfamily c-terminal domain	Back alignment and domain information

>KOG1911\|consensus	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>KOG1132\|consensus	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>PRK07003 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>smart00491 HELICc2 helicase superfamily c-terminal domain	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>KOG2748\|consensus	Back alignment and domain information

>KOG4150\|consensus	Back alignment and domain information

>PLN03025 replication factor C subunit; Provisional	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG1001\|consensus	Back alignment and domain information

>TIGR02881 spore_V_K stage V sporulation protein K	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PRK09112 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG1133\|consensus	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily	Back alignment and domain information

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX	Back alignment and domain information

>CHL00181 cbbX CbbX; Provisional	Back alignment and domain information

>PRK07764 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>PRK05707 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK12402 replication factor C small subunit 2; Reviewed	Back alignment and domain information

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK06526 transposase; Provisional	Back alignment and domain information

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PHA02533 17 large terminase protein; Provisional	Back alignment and domain information

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda	Back alignment and domain information

>TIGR02928 orc1/cdc6 family replication initiation protein	Back alignment and domain information

>PRK07994 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PRK08181 transposase; Validated	Back alignment and domain information

>PRK06645 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK07940 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin	Back alignment and domain information

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG0991\|consensus	Back alignment and domain information

>KOG1805\|consensus	Back alignment and domain information

>PRK09111 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08451 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK07471 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK08691 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK08769 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK00440 rfc replication factor C small subunit; Reviewed	Back alignment and domain information

>PHA02544 44 clamp loader, small subunit; Provisional	Back alignment and domain information

>PRK08058 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK08084 DNA replication initiation factor; Provisional	Back alignment and domain information

>PRK06871 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins	Back alignment and domain information

>KOG0387\|consensus	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>PRK08116 hypothetical protein; Validated	Back alignment and domain information

>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2	Back alignment and domain information

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>cd01121 Sms Sms (bacterial radA) DNA repair protein	Back alignment and domain information

>PF13173 AAA_14: AAA domain	Back alignment and domain information

>PRK00411 cdc6 cell division control protein 6; Reviewed	Back alignment and domain information

>PRK06090 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>KOG0330\|consensus	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>PRK06647 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>TIGR00678 holB DNA polymerase III, delta' subunit	Back alignment and domain information

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed	Back alignment and domain information

>PRK07993 DNA polymerase III subunit delta'; Validated	Back alignment and domain information

>KOG0989\|consensus	Back alignment and domain information

>TIGR00362 DnaA chromosomal replication initiator protein DnaA	Back alignment and domain information

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>PRK08727 hypothetical protein; Validated	Back alignment and domain information

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional	Back alignment and domain information

>PRK13889 conjugal transfer relaxase TraA; Provisional	Back alignment and domain information

>PRK05896 DNA polymerase III subunits gamma and tau; Validated	Back alignment and domain information

>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA	Back alignment and domain information

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1001
3mwy_W		800	Crystal Structure Of The Chromodomain-atpase Portio		1e-113
1z6a_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN		1e-37
1z63_A		500	Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM		6e-36
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		7e-19
1z3i_X		644	Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA		1e-18
2ee1_A		64	Solution Structures Of The Chromo Domain Of Human C		3e-08
2ee1_A		64	Solution Structures Of The Chromo Domain Of Human C		3e-08
1z5z_A		271	Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal		6e-08

>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800