Psyllid ID: psy10458

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560---
MWSFKNVFSFSKALKDPSGNVLSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFKKQNLSEKAKSVFFSEKSRPKERMVSVEDLFSTETSEDSQVPVEPDFKKRKPISAQTLKAVQKAMKTK
ccccccccccccccccccccccccccHHHHHHHHHHHccEEEEEEcccEEEEEEccccEEEEEEEccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccEEEEccccccEEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
cccccEEEEHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccEEEEEEEccHHHHHHHHHccccccccccccccccHEEEccccccccHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccccEcEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccHcHHHHcccccccccEEEEccccccccccHHHccccccccccccccHHHHHHHHHHHHHHccccccEEEEEcccEcccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHccc
mwsfknvfsfskalkdpsgnvlskyfvpsieYRRLEAQRSILFGTVqsmhhytlpgqTHFVIVEMKDSQVTRRILNkcghldksqvipvrspflwfranknktklsdesdyakincdthnvfpptedHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALsglfplcaifpfgssvnnfgklgcdLDLVLQLdlqsqgdndqcrlmfhcksslgsersqTLRHLETVGDLLQlflpgcsqlflpgcSQVKRilgarvpiikynhdmsalecDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAkdinltnptpgrwitnFSLTLLVLFYLQsvkvlpplkllideaslkdrrisedgvnctfvrditklqfhpsipeqstdSLTTLLFGFFEfysqydfnnqgislylgspipkpehgalyinnplerglnvsknvsfeELERLKVEVRNAswtlestansnnkpshtpseswGLLELFKKQNLSEKAKSVFfseksrpkermvsVEDLfstetsedsqvpvepdfkkrkpisAQTLKAVQKAMKTK
MWSFKNVFSfskalkdpsgnvlSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNkcghldksqvipvrspflwfRANKNktklsdesdyaKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAkdinltnptpgrWITNFSLTLLVLFYLQSVKVLPPLKLLIDeaslkdrrisedgvnCTFVRDItklqfhpsipeqstDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWtlestansnnkpshtpSESWGLLELFKKQNLSEKAKsvffseksrpkermvSVEDlfstetsedsqvpvepdfkkrkpisaqtlkavqkamktk
MWSFKNVFSFSKALKDPSGNVLSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKlgcdldlvlqldlqsqgdNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFKKQNLSEKAKSVFFSEKSRPKERMVSVEDLFSTETSEDSQVPVEPDFKKRKPISAQTLKAVQKAMKTK
*****NVFSFSKALKDPSGNVLSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKL**ESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSL*****QTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASW*********************LLEL*********************************************************************
*WS***************************EYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQ************************************************************RECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQF********TDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLE*******************************************************************************************
MWSFKNVFSFSKALKDPSGNVLSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLES**************SWGLLELFKKQNLSEKAKSVFF************VEDL***************DFKKRKPISAQT***********
*WSFKNVFSFSKALKDPSGNVLSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNK*****ESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTA************SWGLLE**********************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MWSFKNVFSFSKALKDPSGNVLSKYFVPSIEYRRLEAQRSILFGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTPSESWGLLELFKKQNLSEKAKSVFFSEKSRPKERMVSVEDLFSTETSEDSQVPVEPDFKKRKPISAQTLKAVQKAMKTK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query563 2.2.26 [Sep-21-2011]
Q9D0D3585 Poly(A) RNA polymerase, m yes N/A 0.804 0.774 0.356 3e-73
Q9NVV4582 Poly(A) RNA polymerase, m yes N/A 0.683 0.661 0.375 2e-70
Q4KMD7 797 Speckle targeted PIP5K1A- no N/A 0.630 0.445 0.297 8e-35
Q1JPD6 871 Speckle targeted PIP5K1A- no N/A 0.486 0.314 0.304 1e-28
Q9H6E5 874 Speckle targeted PIP5K1A- no N/A 0.401 0.258 0.329 4e-27
D2HS90 869 Speckle targeted PIP5K1A- no N/A 0.436 0.283 0.300 7e-27
Q3MHT4 866 Speckle targeted PIP5K1A- no N/A 0.401 0.260 0.305 5e-25
Q8R3F9 869 Speckle targeted PIP5K1A- no N/A 0.388 0.252 0.318 3e-23
A9JTS5 843 Speckle targeted PIP5K1A- no N/A 0.630 0.421 0.269 3e-23
Q91YI6484 Poly(A) RNA polymerase GL no N/A 0.465 0.541 0.268 1e-19
>sp|Q9D0D3|PAPD1_MOUSE Poly(A) RNA polymerase, mitochondrial OS=Mus musculus GN=Mtpap PE=2 SV=1 Back     alignment and function desciption
 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 178/499 (35%), Positives = 259/499 (51%), Gaps = 46/499 (9%)

Query: 21  VLSKYFVPSIEYRRLEAQRSIL-----------FGTVQSMH-----HYTLPGQTHFVIVE 64
            L K F    + RR +AQR++L           F    S H     H+       F +VE
Sbjct: 58  TLQKKFSEVQKERREQAQRTVLIHCPNNINEKKFLKYLSQHGPVNNHFFYESFGLFAVVE 117

Query: 65  MKDSQVTRRILNKCGHLDKS--QVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVF 122
                  + + N      +S    IP +S FL  R     +++S +         T N  
Sbjct: 118 FCQKDSIKSLQNGTHTPTQSTEAAIPFKSRFLNLRLKNPSSQVSGQPFV-----QTTNQS 172

Query: 123 PPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFP 182
           PP+   + E L+   +I +Q+ TL    ++ + N RLR L    +E   +  FP C I P
Sbjct: 173 PPSSKKLFELLSYAESIEEQLNTLLKAFQLTEENIRLRHLTCSLIEDIAAAYFPSCVIRP 232

Query: 183 FGSSVNNFGKLGCDLDLVLQLD----LQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETV 238
           FGSSVN FGKLGCDLD+ L LD    L    +     + F  K+ + SER  T + L  +
Sbjct: 233 FGSSVNTFGKLGCDLDMFLDLDETGKLDVHKNTGNFFMEFQVKN-VPSERIATQKILSVI 291

Query: 239 GDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELL 298
           G+        C   F PGC  V++IL AR P+++++H  S  +CDL+  N  AL  +ELL
Sbjct: 292 GE--------CLDNFGPGCVGVQKILNARCPLVRFSHQGSGFQCDLTANNSIALKSSELL 343

Query: 299 YLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQ--SVKVLPPLK 356
           Y++G +D RVR LVF+++ WA+  +LT+  PG WITNFSLT++V+F+LQ  S  +LP L 
Sbjct: 344 YIYGSLDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTVMVIFFLQRRSPPILPTLD 403

Query: 357 LLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFN 416
            L   A  +DR I E G NCTFV+D+ K+Q     P  +T++L  L+  FFE++  + FN
Sbjct: 404 SLKSIADAEDRCILE-GNNCTFVQDVNKIQ-----PSGNTETLELLIKEFFEYFGNFAFN 457

Query: 417 NQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTAN 476
              I++  G    KP+   LYI NP E  LN+SKNVS  +L++     R+++W LE    
Sbjct: 458 KNSINIRQGREQNKPDSSPLYIQNPFETSLNISKNVSQSQLQKFVELARDSAWILEQ--E 515

Query: 477 SNNKPSHTPSESWGLLELF 495
             N+P  +  + WGL  L 
Sbjct: 516 DKNQPFSSSRQPWGLAALL 534
Polymerase that creates the 3' poly(A) tail of mitochondrial transcripts. Can use all four nucleotides, but has higher activity with ATP and UTP (in vitro). Plays a role in replication-dependent histone mRNA degradation. May be involved in the terminal uridylation of mature histone mRNAs before their degradation is initiated. Might be responsible for the creation of some UAA stop codons which are not encoded in mtDNA.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q9NVV4|PAPD1_HUMAN Poly(A) RNA polymerase, mitochondrial OS=Homo sapiens GN=MTPAP PE=1 SV=1 Back     alignment and function description
>sp|Q4KMD7|STPAP_DANRE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Danio rerio GN=tut1 PE=2 SV=1 Back     alignment and function description
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus GN=TUT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H6E5|STPAP_HUMAN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Homo sapiens GN=TUT1 PE=1 SV=2 Back     alignment and function description
>sp|D2HS90|STPAP_AILME Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Ailuropoda melanoleuca GN=TUT1 PE=3 SV=1 Back     alignment and function description
>sp|Q3MHT4|STPAP_RAT Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Rattus norvegicus GN=Tut1 PE=2 SV=1 Back     alignment and function description
>sp|Q8R3F9|STPAP_MOUSE Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Mus musculus GN=Tut1 PE=1 SV=1 Back     alignment and function description
>sp|A9JTS5|STPAP_XENTR Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Xenopus tropicalis GN=tut1 PE=2 SV=1 Back     alignment and function description
>sp|Q91YI6|GLD2_MOUSE Poly(A) RNA polymerase GLD2 OS=Mus musculus GN=Papd4 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
270009992577 hypothetical protein TcasGA2_TC009322 [T 0.857 0.837 0.479 1e-131
91085789581 PREDICTED: similar to CG11418 CG11418-PA 0.861 0.834 0.475 1e-131
328711103557 PREDICTED: poly(A) RNA polymerase, mitoc 0.833 0.842 0.476 1e-123
195044023610 GH11902 [Drosophila grimshawi] gi|193901 0.861 0.795 0.438 1e-121
195393058618 GJ19221 [Drosophila virilis] gi|19414968 0.847 0.771 0.442 1e-121
198470955660 GA10992 [Drosophila pseudoobscura pseudo 0.868 0.740 0.440 1e-120
195162231628 GL14387 [Drosophila persimilis] gi|19410 0.861 0.772 0.438 1e-119
195130965613 GI15633 [Drosophila mojavensis] gi|19390 0.909 0.835 0.412 1e-117
194763565611 GF21267 [Drosophila ananassae] gi|190618 0.912 0.841 0.428 1e-117
195469707612 GE16534 [Drosophila yakuba] gi|194187302 0.888 0.816 0.430 1e-116
>gi|270009992|gb|EFA06440.1| hypothetical protein TcasGA2_TC009322 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/538 (47%), Positives = 347/538 (64%), Gaps = 55/538 (10%)

Query: 26  FVPSIEYRRLEAQRSILF------------------GTVQSMHHYTLPGQ-THFVIVEMK 66
           F+  I++RR EA+RSIL                   G V+ M HYT+  +  +F++VE  
Sbjct: 42  FMDVIKFRREEARRSILVQVQSAQSFKELHSYCNSVGNVRQMLHYTVGVEPLNFIVVEFA 101

Query: 67  DSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHN-VFPPT 125
             +    +L +  +L+ SQV+PV+S FLWFRA+  K     +S  A ++ +  N    P+
Sbjct: 102 SEKDVTNVLERSSYLEDSQVVPVQSQFLWFRASNRKLPKLKQSKSAILSIENGNQCVTPS 161

Query: 126 EDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGS 185
           E  +   L+ C+++++QM  L+N TK+ND+ TRLRFL A QVE A+ G+FP    +PFGS
Sbjct: 162 E--IVNLLSKCDSVSEQMNVLYNSTKLNDLGTRLRFLTARQVENAVRGMFPKAKAYPFGS 219

Query: 186 SVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLLQLF 245
           SVN +GK+GCDLDLVL+L    +  ND  RLMFHCK  +GSER+ + R++E +GDLLQLF
Sbjct: 220 SVNGYGKMGCDLDLVLRL-CDDKVKND-ARLMFHCKGLVGSERTASQRNMEAIGDLLQLF 277

Query: 246 LPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEID 305
           LPGCSQ        V+RIL ARVPIIKY   ++ +ECDLSM N++ ++M++ LY+ G +D
Sbjct: 278 LPGCSQ--------VRRILQARVPIIKYYQQLTDVECDLSMANMSGVHMSDFLYIMGSLD 329

Query: 306 WRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQ----SVKVLPPLKLLIDE 361
            R+RPLVFTI+KWA +I LTN +PGRWITNFSLTLLVL +LQ    S  +LP L  L+  
Sbjct: 330 ARIRPLVFTIRKWASEIGLTNSSPGRWITNFSLTLLVLAFLQKPINSKPILPSLNTLVKL 389

Query: 362 ASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGIS 421
           A  KD  ++EDG+NCTF+RDITKL+     P ++ +SL TLL  FFEFYSQ+DF ++ + 
Sbjct: 390 AEPKDSYMTEDGINCTFLRDITKLK----TPTENKESLETLLVEFFEFYSQFDFASKALC 445

Query: 422 LYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKP 481
           L     I KPEH ALYI NPLERGLNVSKNVS EEL+R +VE RNA+W LES  N N   
Sbjct: 446 LNESVAITKPEHCALYIVNPLERGLNVSKNVSMEELDRFRVEARNAAWILESQENKN--- 502

Query: 482 SHTPSESWGLLELFKKQNLSEKAKSVFFSEKSRPKERMVSVEDLFSTETSEDSQVPVE 539
                E+WG+L +F+ +    KA SV     +    R+V V  LF     E++  PVE
Sbjct: 503 -----ENWGILSIFENK---RKASSVVNFAFANKHGRLVEVSTLF----EENTDKPVE 548

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91085789|ref|XP_974515.1| PREDICTED: similar to CG11418 CG11418-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328711103|ref|XP_001945875.2| PREDICTED: poly(A) RNA polymerase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195044023|ref|XP_001991738.1| GH11902 [Drosophila grimshawi] gi|193901496|gb|EDW00363.1| GH11902 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195393058|ref|XP_002055171.1| GJ19221 [Drosophila virilis] gi|194149681|gb|EDW65372.1| GJ19221 [Drosophila virilis] Back     alignment and taxonomy information
>gi|198470955|ref|XP_001355451.2| GA10992 [Drosophila pseudoobscura pseudoobscura] gi|198145697|gb|EAL32510.2| GA10992 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195162231|ref|XP_002021959.1| GL14387 [Drosophila persimilis] gi|194103857|gb|EDW25900.1| GL14387 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195130965|ref|XP_002009921.1| GI15633 [Drosophila mojavensis] gi|193908371|gb|EDW07238.1| GI15633 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|194763565|ref|XP_001963903.1| GF21267 [Drosophila ananassae] gi|190618828|gb|EDV34352.1| GF21267 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195469707|ref|XP_002099778.1| GE16534 [Drosophila yakuba] gi|194187302|gb|EDX00886.1| GE16534 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query563
UNIPROTKB|E2RCU9584 MTPAP "Uncharacterized protein 0.902 0.869 0.319 7.6e-64
UNIPROTKB|F1MSM5583 MTPAP "Uncharacterized protein 0.825 0.797 0.336 2e-63
MGI|MGI:1914690585 Mtpap "mitochondrial poly(A) p 0.799 0.769 0.346 7.9e-62
RGD|1310900584 Mtpap "mitochondrial poly(A) p 0.726 0.700 0.358 7.9e-62
UNIPROTKB|Q9NVV4582 MTPAP "Poly(A) RNA polymerase, 0.772 0.747 0.336 1.9e-60
UNIPROTKB|F1NBW0518 MTPAP "Uncharacterized protein 0.696 0.756 0.343 5.3e-56
UNIPROTKB|F1RPX0 872 TUT1 "Uncharacterized protein" 0.461 0.298 0.304 8.9e-29
UNIPROTKB|Q9H6E5 874 TUT1 "Speckle targeted PIP5K1A 0.454 0.292 0.315 1e-28
UNIPROTKB|F5H0R1 912 TUT1 "Speckle targeted PIP5K1A 0.454 0.280 0.315 1.2e-28
UNIPROTKB|D2HS90 869 TUT1 "Speckle targeted PIP5K1A 0.461 0.299 0.301 1.7e-28
UNIPROTKB|E2RCU9 MTPAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
 Identities = 179/560 (31%), Positives = 280/560 (50%)

Query:    16 DPSGNVLSKYFVPSIEYRRLEAQRSIL-----------FGTVQSMH-----HYTLPGQTH 59
             D  G    K F    + RR +AQR++L           F    S H     H+       
Sbjct:    52 DSEGRTPKKKFSELQKERREQAQRTVLIHCPNKISEKKFLKYLSQHGPINNHFFYESFGL 111

Query:    60 FVIVEM--KDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCD 117
             + +VE   K+S  + + + +   +D    IP +S F  F   K K   S  S+ + I C 
Sbjct:   112 YAVVEFCQKESVTSLQNITRTPSMDTEAAIPFKSRF--FNL-KMKNPSSQTSEQSCIQCS 168

Query:   118 THNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPL 177
              H+  PP+   + E L    +I  Q+ TL    ++ + + +LR+L    +E   +  F  
Sbjct:   169 NHS--PPSSKKLSELLCYAESIDDQLNTLLKEFQLTEEDIKLRYLTCSLIEDIAAAYFLD 226

Query:   178 CAIFPFGSSVNNFGKXXXXXXXXXXXXXXXXXXNDQCR---LM-FHCKSSLGSERSQTLR 233
             C + PFGSSVN+FGK                   ++     LM F  KS + SER  T +
Sbjct:   227 CTVRPFGSSVNSFGKLGCDLDMFLDLDEIGKLNTNKTSGNFLMEFQVKS-VPSERVATQK 285

Query:   234 HLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALY 293
              L  +G+        C   F PGC  V++IL AR P+++++H  S  +CDL+  N  AL 
Sbjct:   286 VLSVIGE--------CLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCDLTTNNRIALK 337

Query:   294 MAELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQ--SVKV 351
              +ELLY++G +D RVR +VF+I+ WA+  +LT+  PG WITNFSLT++V+F+LQ  S  +
Sbjct:   338 SSELLYIYGALDSRVRAMVFSIRCWARAHSLTSSIPGSWITNFSLTMMVIFFLQRRSPPI 397

Query:   352 LPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS 411
             LP L  L   A  +D+ I E G NCTF+RD+ +++     P  +T++L +LL  FFE++ 
Sbjct:   398 LPTLDYLKTLADAEDKCIIE-GHNCTFIRDLNRIK-----PSGNTETLESLLKEFFEYFG 451

Query:   412 QYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTL 471
              + FN   I++  G    KPE   L+I NP E  LN+SKNVS  +L++     R ++W L
Sbjct:   452 NFAFNKNSINIRQGREQNKPESSPLHIQNPFETSLNISKNVSQSQLQKFVDLARESAWIL 511

Query:   472 ESTANSNNKPSHTPSESWGLLELFKKQNLSEKAKSVFFSEKSRPKERMVSVEDLFSTETS 531
                    ++PS + ++ WGL  L     L     SV  ++K R K     +++L   E+ 
Sbjct:   512 SQ--EDKDRPSPSSNQPWGLAALL----LPSVVNSVSLAKKKRKKPASERIKNLL--ESI 563

Query:   532 EDSQVPVEPDFKKRKPISAQ 551
             + S    + +   ++ +S Q
Sbjct:   564 KSSSPENDTNTNGKRTVSTQ 583
GO:0071044 "histone mRNA catabolic process" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0030145 "manganese ion binding" evidence=IEA
GO:0006378 "mRNA polyadenylation" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0005794 "Golgi apparatus" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=IEA
GO:0002134 "UTP binding" evidence=IEA
GO:0000287 "magnesium ion binding" evidence=IEA
UNIPROTKB|F1MSM5 MTPAP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1914690 Mtpap "mitochondrial poly(A) polymerase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310900 Mtpap "mitochondrial poly(A) polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NVV4 MTPAP "Poly(A) RNA polymerase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBW0 MTPAP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RPX0 TUT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H6E5 TUT1 "Speckle targeted PIP5K1A-regulated poly(A) polymerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5H0R1 TUT1 "Speckle targeted PIP5K1A-regulated poly(A) polymerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D2HS90 TUT1 "Speckle targeted PIP5K1A-regulated poly(A) polymerase" [Ailuropoda melanoleuca (taxid:9646)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9D0D3PAPD1_MOUSE2, ., 7, ., 7, ., 1, 90.35670.80460.7743yesN/A
Q9NVV4PAPD1_HUMAN2, ., 7, ., 7, ., 1, 90.3750.68380.6615yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.7LOW CONFIDENCE prediction!
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 3e-21
COG5260482 COG5260, TRF4, DNA polymerase sigma [DNA replicati 1e-13
pfam0382859 pfam03828, PAP_assoc, Cid1 family poly A polymeras 2e-06
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information 
 Score = 88.4 bits (220), Expect = 3e-21
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 30/144 (20%)

Query: 159 LRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCRLMF 218
            R  V  +++  +   FP   ++PFGS V   G  G D+DL L                 
Sbjct: 1   KREEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGP-------------- 46

Query: 219 HCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMS 278
                  + R      L  +  LL+               +V+ I+ ARVPIIK+    +
Sbjct: 47  -------NHRVDREDFLRKLAKLLKKS---------GEVVEVEPIINARVPIIKFVDKPT 90

Query: 279 ALECDLSMTNLTALYMAELLYLFG 302
            +E D+S  NL  +   +LL  + 
Sbjct: 91  GIEVDISFNNLNGIRNTKLLRAYV 114

Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxylate residues are conserved. Length = 114
>gnl|CDD|227585 COG5260, TRF4, DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|217750 pfam03828, PAP_assoc, Cid1 family poly A polymerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 563
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 100.0
KOG1906|consensus514 100.0
KOG2277|consensus596 100.0
PTZ00418 593 Poly(A) polymerase; Provisional 100.0
KOG2245|consensus 562 100.0
COG5186 552 PAP1 Poly(A) polymerase [RNA processing and modifi 99.91
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.89
PF04928254 PAP_central: Poly(A) polymerase central domain; In 99.84
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.7
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.65
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.53
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 99.15
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 98.33
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.28
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 98.28
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.83
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 97.81
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.79
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.55
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 97.28
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 97.28
KOG2054|consensus 1121 96.66
COG166997 Predicted nucleotidyltransferases [General functio 96.48
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 95.98
COG1708128 Predicted nucleotidyltransferases [General functio 95.74
PRK13746262 aminoglycoside resistance protein; Provisional 95.11
PF1389356 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or 94.44
PF14091152 DUF4269: Domain of unknown function (DUF4269) 92.28
KOG3793|consensus362 91.45
KOG2054|consensus1121 90.89
KOG0148|consensus321 90.65
PF1425970 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or 89.43
smart0036272 RRM_2 RNA recognition motif. 89.17
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 88.39
KOG0130|consensus170 87.65
KOG0415|consensus479 87.27
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 85.55
smart0036071 RRM RNA recognition motif. 85.01
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 84.93
PLN03120260 nucleic acid binding protein; Provisional 84.93
PLN03134144 glycine-rich RNA-binding protein 4; Provisional 84.51
TIGR01649481 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor 83.37
PLN03121243 nucleic acid binding protein; Provisional 82.79
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-43  Score=370.24  Aligned_cols=282  Identities=24%  Similarity=0.357  Sum_probs=233.4

Q ss_pred             cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCCCcccc
Q psy10458        136 CNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGDNDQCR  215 (563)
Q Consensus       136 ~~~l~~qI~~l~~~~~pt~~e~~~R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~~~~~~  215 (563)
                      ...++.++..||.++.|+++|.+.|..+++.|+.++.+.||++.+++|||+.+|+++++||||+||..+..-.       
T Consensus        54 ~~~lt~el~~~y~~I~ps~eEl~~R~~~leklr~~lk~~~pda~l~vFGS~~t~L~l~~SDiDl~I~s~~~~~-------  126 (482)
T COG5260          54 SDELTSELLEFYDYIAPSDEELKRRKALLEKLRTLLKKEFPDADLKVFGSTETGLALPKSDIDLCIISDPRGY-------  126 (482)
T ss_pred             HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHhCCccceeEecccccccccCcccccEEEecCCccc-------
Confidence            3457899999999999999999999999999999999999999999999999999999999999999876411       


Q ss_pred             hhhcccccCCcchHHHHHHHHHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhH
Q psy10458        216 LMFHCKSSLGSERSQTLRHLETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMA  295 (563)
Q Consensus       216 l~~~~k~~~~~~R~~~~~~L~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS  295 (563)
                         .      ..|.   . +..+..++...          +...++.|.+||||||||++..+|++|||++||..|+.|+
T Consensus       127 ---~------et~~---~-~~l~~~l~~~~----------~~~~~~~v~tarVPIIKl~d~~s~l~~Disfn~~~~~~~a  183 (482)
T COG5260         127 ---K------ETRN---A-GSLASHLFKKN----------LAKEVVVVSTARVPIIKLVDPQSGLHCDISFNNTNGIVNA  183 (482)
T ss_pred             ---c------cccc---H-HHHHHHHHHhc----------cCeeeEEEEecccceEEEecCccceEEEeecCchhHHHHH
Confidence               1      0111   1 12222333321          5678889999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcCCCCCchhhhhhhhcccCcceeeCCcc
Q psy10458        296 ELLYLFGEIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKDRRISEDGVN  375 (563)
Q Consensus       296 ~LL~~y~~~dpr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~pvLP~Lq~l~~~~~~~d~~~~~~g~d  375 (563)
                      ++++.|...||++|||+++||+||+.|.|++++.|| |+||++++||+.|||++|..|-++.               |. 
T Consensus       184 kl~~~~~~~~P~lrpLvliIKhwl~~R~ln~~~~Gt-L~sy~i~cmV~sfLq~~~~~~~~~~---------------~~-  246 (482)
T COG5260         184 KLIRSYLKEDPRLRPLVLIIKHWLKRRALNDVATGT-LSSYTISCMVLSFLQMHPPFLFFDN---------------GL-  246 (482)
T ss_pred             HHHHHHHhcCcccchHHHHHHHHHHHHhhcccccCc-chhhhhHHHHHHHHHhCCccccccc---------------cc-
Confidence            999999999999999999999999999999999887 9999999999999999763222111               00 


Q ss_pred             cccccccccccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEecCC-CCcCCC-------CC-CCeEEecCC-CC
Q psy10458        376 CTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLG-SPIPKP-------EH-GALYINNPL-ER  444 (563)
Q Consensus       376 ~~F~~d~~~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir~G-~~~~K~-------~~-~~L~I~DPf-e~  444 (563)
                            ++.+.     ...|..++|.||.+||+||+ .|+|...+++++.| ..++|.       .+ ..|+||||+ ++
T Consensus       247 ------~~~l~-----~~~~~~~lgvLf~dFf~~yG~~f~Y~~~~~si~~g~~~~~K~e~g~~~~~~p~~LsiqdP~td~  315 (482)
T COG5260         247 ------LSPLK-----YNKNIDNLGVLFDDFFELYGKSFNYSLVVLSINSGDFYLPKYEKGWLKPSKPNSLSIQDPGTDR  315 (482)
T ss_pred             ------cchhh-----ccccccccchHHHHHHHHhccccChhheEEEecCCceeeehhhcccccccCCCcEeecCCCCCc
Confidence                  01110     13677899999999999999 99999999999999 444442       23 789999999 87


Q ss_pred             CCCccccCCHHhHHHHHHHHHHHHHHHHhhhcC
Q psy10458        445 GLNVSKNVSFEELERLKVEVRNASWTLESTANS  477 (563)
Q Consensus       445 ~~NvarnVs~~~~~~i~~ef~~A~~~L~~~~~~  477 (563)
                      .+++++..  .++..++.+|.+|..+|...+..
T Consensus       316 n~~~~a~s--~~ik~i~~~F~~aF~lls~~~~t  346 (482)
T COG5260         316 NNDISAVS--FNIKDIKAAFIRAFELLSNKLFT  346 (482)
T ss_pred             cccccccc--chHHHHHHHHHHHHHHHhhhcch
Confidence            77777644  78899999999998888876543

>KOG1906|consensus Back     alignment and domain information
>KOG2277|consensus Back     alignment and domain information
>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>KOG2245|consensus Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>KOG2054|consensus Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF13893 RRM_5: RNA recognition motif Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>KOG3793|consensus Back     alignment and domain information
>KOG2054|consensus Back     alignment and domain information
>KOG0148|consensus Back     alignment and domain information
>PF14259 RRM_6: RNA recognition motif (a Back     alignment and domain information
>smart00362 RRM_2 RNA recognition motif Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>KOG0130|consensus Back     alignment and domain information
>KOG0415|consensus Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>smart00360 RRM RNA recognition motif Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>PLN03120 nucleic acid binding protein; Provisional Back     alignment and domain information
>PLN03134 glycine-rich RNA-binding protein 4; Provisional Back     alignment and domain information
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family Back     alignment and domain information
>PLN03121 nucleic acid binding protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
3pq1_A464 Crystal Structure Of Human Mitochondrial Poly(A) Po 8e-45
4e7x_A405 Structural Basis For The Activity Of A Cytoplasmic 1e-15
4fh3_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 2e-15
4ep7_A340 Functional Implications From The Cid1 Poly(U) Polym 2e-15
4fhx_A349 Crystal Structures Of The Cid1 Poly (U) Polymerase 3e-15
3hj1_A387 Minor Editosome-Associated Tutase 1 With Bound Utp 1e-04
3hiy_B384 Minor Editosome-Associated Tutase 1 With Bound Utp 9e-04
>pdb|3PQ1|A Chain A, Crystal Structure Of Human Mitochondrial Poly(A) Polymerase (Papd1) Length = 464 Back     alignment and structure 
Iteration: 1

 Score =  178 bits (451), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 182/370 (49%), Gaps = 43/370 (11%)
Query: 131 ECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGSSVNNF 190
           E L    +I  Q+ TL    ++ + NT+LR+L    +E   +  FP C + PFGSSVN F
Sbjct: 126 ELLCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDXAAAYFPDCIVRPFGSSVNTF 185
Query: 191 GKXXXXXXXXXXXXXXXXXXNDQCRLMFHCK---SSLGSERSQTLRHLETVGDLLQLFLP 247
           GK                    +    F  +    ++ SER  T + L  +G+       
Sbjct: 186 GKLGCDLDXFLDLDETRNLSAHKISGNFLXEFQVKNVPSERIATQKILSVLGE------- 238
Query: 248 GCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWR 307
            C   F PGC  V++IL AR P+++++H  S  +C L+  N  AL  +ELLY++G +D R
Sbjct: 239 -CLDHFGPGCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYGALDSR 297
Query: 308 VRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQ--SVKVLPPLKLLIDEASLK 365
           VR LVF+++ WA+  +LT+  PG WITNFSLT  V+F+LQ  S  +LP L  L   A  +
Sbjct: 298 VRALVFSVRCWARAHSLTSSIPGAWITNFSLTXXVIFFLQRRSPPILPTLDSLKTLADAE 357
Query: 366 DRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGISLYLG 425
           D+ + E G NCTFVRD+++++     P Q+T++L  LL  FFE++  +            
Sbjct: 358 DKCVIE-GNNCTFVRDLSRIK-----PSQNTETLELLLKEFFEYFGNFAXXXXXXXXX-- 409
Query: 426 SPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNKPSHTP 485
                                     VS  +L++     R ++W L+      ++PS + 
Sbjct: 410 --------------------XXXXXXVSQSQLQKFVDLARESAWILQQ--EDTDRPSISS 447
Query: 486 SESWGLLELF 495
           +  WGL+ L 
Sbjct: 448 NRPWGLVSLL 457
>pdb|4E7X|A Chain A, Structural Basis For The Activity Of A Cytoplasmic Rna Terminal U- Transferase Length = 405 Back     alignment and structure
>pdb|4FH3|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity Length = 349 Back     alignment and structure
>pdb|4EP7|A Chain A, Functional Implications From The Cid1 Poly(U) Polymerase Crystal Structure Length = 340 Back     alignment and structure
>pdb|4FHX|A Chain A, Crystal Structures Of The Cid1 Poly (U) Polymerase Reveal The Mechanism For Utp Selectivity - H336n Mutant Bound To Mgatp Length = 349 Back     alignment and structure
>pdb|3HJ1|A Chain A, Minor Editosome-Associated Tutase 1 With Bound Utp Length = 387 Back     alignment and structure
>pdb|3HIY|B Chain B, Minor Editosome-Associated Tutase 1 With Bound Utp And Mg Length = 384 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query563
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 6e-75
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 9e-52
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 1e-51
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 6e-51
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 3e-49
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 2e-41
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 5e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
 Score =  244 bits (624), Expect = 6e-75
 Identities = 139/495 (28%), Positives = 217/495 (43%), Gaps = 99/495 (20%)

Query: 24  KYFVPSIEYRRLEAQRSIL------------------FGTVQSMHHYTLPGQTHFVIVEM 65
           + F      RR +AQR++L                  FG + +   Y       + +VE 
Sbjct: 39  RRFSEMQNERREQAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFY--ESFGLYAVVEF 96

Query: 66  KDSQVTRRILNKCGHLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPT 125
              +    + N                                                +
Sbjct: 97  CQKESIGSLQNGTH------------------------------------TPXXXXXXXS 120

Query: 126 EDHVRECLASCNTITQQMTTLHNITKMNDINTRLRFLVAYQVELALSGLFPLCAIFPFGS 185
              + E L    +I  Q+ TL    ++ + NT+LR+L    +E   +  FP C + PFGS
Sbjct: 121 NKQLFELLCYAESIDDQLNTLLKEFQLTEENTKLRYLTCSLIEDMAAAYFPDCIVRPFGS 180

Query: 186 SVNNFGKLGCDLDLVLQLD---LQSQGDNDQCRLMFHCKSSLGSERSQTLRHLETVGDLL 242
           SVN FGKLGCDLD+ L LD     S        LM     ++ SER  T + L  +G+ L
Sbjct: 181 SVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKNVPSERIATQKILSVLGECL 240

Query: 243 QLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFG 302
             F PGC          V++IL AR P+++++H  S  +C L+  N  AL  +ELLY++G
Sbjct: 241 DHFGPGCVG--------VQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYG 292

Query: 303 EIDWRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVK--VLPPLKLLID 360
            +D RVR LVF+++ WA+  +LT+  PG WITNFSLT++V+F+LQ     +LP L  L  
Sbjct: 293 ALDSRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKT 352

Query: 361 EASLKDRRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYSQYDFNNQGI 420
            A  +D+ +  +G NCTFVRD+++++     P Q+T++L  LL  FFE++  +       
Sbjct: 353 LADAEDKCVI-EGNNCTFVRDLSRIK-----PSQNTETLELLLKEFFEYFGNFA------ 400

Query: 421 SLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLESTANSNNK 480
                                          VS  +L++     R ++W L+      ++
Sbjct: 401 ----------------XXXXXXXXXXXXXXXVSQSQLQKFVDLARESAWILQQE--DTDR 442

Query: 481 PSHTPSESWGLLELF 495
           PS + +  WGL+ L 
Sbjct: 443 PSISSNRPWGLVSLL 457
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A 530 Poly(A) polymerase; template-independent RNA polym 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.53
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.33
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 98.44
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 97.41
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.36
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 97.11
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 96.58
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 96.58
2wbr_A89 GW182, gawky, LD47780P; DNA-binding protein, RRM, 95.79
2e5g_A94 U6 snRNA-specific terminal uridylyltransferase 1; 95.63
1x4g_A109 Nucleolysin TIAR; structural genomics, RRM domain, 95.49
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 94.96
1s79_A103 Lupus LA protein; RRM, alpha/beta, RNA binding pro 94.77
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 94.26
2ytc_A85 PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s 94.06
1sjq_A105 Polypyrimidine tract-binding protein 1; babbab mot 94.02
3r27_A100 HnRNP L, heterogeneous nuclear ribonucleoprotein L 93.8
1wex_A104 Hypothetical protein (riken cDNA 2810036L13); stru 93.76
2cq1_A101 PTB-like protein L; RRM domain, structural genomic 93.63
1x4f_A112 Matrin 3; structural genomics, RRM domain, NPPSFA, 93.41
2d9o_A100 DNAJ (HSP40) homolog, subfamily C, member 17; RRM 93.2
2cpj_A99 Non-POU domain-containing octamer-binding protein; 93.16
2ad9_A119 Polypyrimidine tract-binding protein 1; RBD, RRM, 93.1
3ucg_A89 Polyadenylate-binding protein 2; ferredoxin-like, 93.09
1x5p_A97 Negative elongation factor E; structure genomics, 93.06
1x4d_A102 Matrin 3; structural genomics, RRM domain, NPPSFA, 92.78
1uaw_A77 Mouse-musashi-1; RNP-type structure, RNA binding p 92.77
3s7r_A87 Heterogeneous nuclear ribonucleoprotein A/B; ferre 92.73
2la4_A101 Nuclear and cytoplasmic polyadenylated RNA-bindin 92.69
2hvz_A101 Splicing factor, arginine/serine-rich 7; RRM, RNA 92.6
2hzc_A87 Splicing factor U2AF 65 kDa subunit; RNA splicing, 92.43
2voo_A193 Lupus LA protein; RNA-binding protein, RNA recogni 92.41
2krb_A81 Eukaryotic translation initiation factor 3 subunit 92.33
2dgs_A99 DAZ-associated protein 1; RRM domain, structural g 92.3
2cph_A107 RNA binding motif protein 19; RNA recognition moti 92.29
1why_A97 Hypothetical protein riken cDNA 1810017N16; RNA re 92.25
1iqt_A75 AUF1, heterogeneous nuclear ribonucleoprotein D0; 92.24
2bz2_A121 Negative elongation factor E; NELF E, RNA recognit 92.23
2jwn_A124 Embryonic polyadenylate-binding protein 2-B; epabp 92.12
4f25_A115 Polyadenylate-binding protein 1; RRM fold, transla 91.88
2mss_A75 Protein (musashi1); RNA-binding domain, RNA bindin 91.79
2dis_A109 Unnamed protein product; structural genomics, RRM 91.73
4fxv_A99 ELAV-like protein 1; RNA recognition motif, putati 91.73
2dnz_A95 Probable RNA-binding protein 23; RNA recognition m 91.54
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 91.54
2cqd_A116 RNA-binding region containing protein 1; RNA recog 91.51
1p1t_A104 Cleavage stimulation factor, 64 kDa subunit; RNA r 91.5
1x4b_A116 Heterogeneous nuclear ribonucleoproteins A2/B1; st 91.34
2dgv_A92 HnRNP M, heterogeneous nuclear ribonucleoprotein M 91.33
2dnq_A90 RNA-binding protein 4B; RRM domain,RBD, structural 91.33
2fy1_A116 RNA-binding motif protein, Y chromosome, family 1 91.3
2dh8_A105 DAZ-associated protein 1; RRM domain, structural g 91.27
2do4_A100 Squamous cell carcinoma antigen recognized by T- c 91.26
2rs2_A109 Musashi-1, RNA-binding protein musashi homolog 1; 91.22
2d9p_A103 Polyadenylate-binding protein 3; RRM domain, struc 91.19
2cqg_A103 TDP-43, TAR DNA-binding protein-43; RNA recognitio 91.19
2cq2_A114 Hypothetical protein LOC91801; RRM domain, structu 91.18
3bs9_A87 Nucleolysin TIA-1 isoform P40; RNA recognition mot 91.1
2cpf_A98 RNA binding motif protein 19; RNA recognition moti 91.08
2ywk_A95 Putative RNA-binding protein 11; RRM-domain, struc 91.08
1x5s_A102 Cold-inducible RNA-binding protein; structure geno 91.0
3p5t_L90 Cleavage and polyadenylation specificity factor S; 90.99
3mdf_A85 Peptidyl-prolyl CIS-trans isomerase E; RRM domain, 90.85
2x1f_A96 MRNA 3'-END-processing protein RNA15; transcriptio 90.81
2e5i_A124 Heterogeneous nuclear ribonucleoprotein L-like; RR 90.75
4a8x_A88 RNA-binding protein with serine-rich domain 1; tra 90.72
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 90.62
1whw_A99 Hypothetical protein riken cDNA 1200009A02; RNA re 90.53
1whx_A111 Hypothetical protein riken cDNA 1200009A02; RNA re 90.46
2kvi_A96 Nuclear polyadenylated RNA-binding protein 3; RNA- 90.3
1p27_B106 RNA-binding protein 8A; nuclear protein, mRNA spli 90.28
2jvo_A108 Nucleolar protein 3; nucleus, phosphorylation, rib 90.13
1x4h_A111 RNA-binding protein 28; structural genomics, RRM d 90.11
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 90.08
2dnh_A105 Bruno-like 5, RNA binding protein; RRM domain, RBD 89.95
2cq0_A103 Eukaryotic translation initiation factor 3 subunit 89.83
1x5t_A96 Splicing factor 3B subunit 4; structure genomics, 89.68
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 89.67
2cqb_A102 Peptidyl-prolyl CIS-trans isomerase E; RNA recogni 89.62
1x5u_A105 Splicing factor 3B subunit 4 (spliceosome associat 89.59
2nlw_A105 Eukaryotic translation initiation factor 3 subunit 89.39
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 89.35
2cqc_A95 Arginine/serine-rich splicing factor 10; RNA recog 89.34
2dgo_A115 Cytotoxic granule-associated RNA binding protein 1 89.18
2la6_A99 RNA-binding protein FUS; structural genomics, nort 89.11
2xnq_A97 Nuclear polyadenylated RNA-binding protein 3; tran 89.07
1x4c_A108 Splicing factor, arginine/serine-rich 1; structura 89.05
3zzy_A130 Polypyrimidine tract-binding protein 1; protein bi 88.95
2cq4_A114 RNA binding motif protein 23; RRM domain, structur 88.75
1x4e_A85 RNA binding motif, single-stranded interacting pro 88.71
1wf1_A110 RNA-binding protein RALY; structural genomics, RRM 88.69
2jrs_A108 RNA-binding protein 39; RNA binding motif of RBM39 88.66
2xs2_A102 Deleted in azoospermia-like; RNA binding protein-R 88.65
2cpi_A111 CCR4-NOT transcription complex subunit 4; RNA reco 88.64
2dgt_A92 RNA-binding protein 30; RRM domain, structural gen 88.61
3beg_B115 Splicing factor, arginine/serine-rich 1; kinase, S 88.47
2e5h_A94 Zinc finger CCHC-type and RNA-binding motif- conta 88.47
3md1_A83 Nuclear and cytoplasmic polyadenylated RNA-bindin 88.41
2j76_E100 EIF-4B, EIF4B, eukaryotic translation initiation f 88.4
3lqv_A115 PRE-mRNA branch site protein P14; cysless mutant, 88.37
3ulh_A107 THO complex subunit 4; nuclear protein, RNA bindin 88.22
2cpz_A115 CUG triplet repeat RNA-binding protein 1; RRM doma 88.15
1h2v_Z156 20 kDa nuclear CAP binding protein; CAP-binding-co 88.13
3n9u_C156 Cleavage and polyadenylation specificity factor S; 88.04
1wg5_A104 Heterogeneous nuclear ribonucleoprotein H; structu 88.0
2do0_A114 HnRNP M, heterogeneous nuclear ribonucleoprotein M 87.98
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 87.96
2kxn_B129 Transformer-2 protein homolog beta; SR protein, RR 87.87
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 87.84
2ki2_A90 SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA 87.72
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 87.65
2i2y_A150 Fusion protein consists of immunoglobin G- binding 87.6
2cpe_A113 RNA-binding protein EWS; RNA recognition motif, RR 87.51
3ns6_A100 Eukaryotic translation initiation factor 3 subuni; 87.51
3s8s_A110 Histone-lysine N-methyltransferase SETD1A; chromat 87.5
2dnm_A103 SRP46 splicing factor; RRM domain, RBD, structural 87.49
1u6f_A139 Tcubp1, RNA-binding protein UBP1; trypanosome, mRN 87.47
3ex7_B126 RNA-binding protein 8A; protein-RNA complex, mRNA 87.37
2khc_A118 Testis-specific RNP-type RNA binding protein; RRM, 87.24
1oo0_B110 CG8781-PA, drosophila Y14; RNA recognition motif, 87.17
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 87.0
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 86.95
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 86.92
2dhg_A104 TRNA selenocysteine associated protein (SECP43); R 86.91
2dgu_A103 Heterogeneous nuclear ribonucleoprotein Q; RRM dom 86.83
1sjr_A164 Polypyrimidine tract-binding protein 1; extended b 86.75
1wf0_A88 TDP-43, TAR DNA-binding protein-43; structural gen 86.6
2kt5_A124 RNA and export factor-binding protein 2; chaperone 86.49
1wg1_A88 KIAA1579 protein, homolog EXC-7; RBD, structural g 86.43
2dnp_A90 RNA-binding protein 14; RRM domain, RBD, structura 86.43
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 86.3
1l3k_A196 Heterogeneous nuclear ribonucleoprotein A1; nuclea 86.27
2e44_A96 Insulin-like growth factor 2 mRNA binding protein 86.27
1wel_A124 RNA-binding protein 12; structural genomics, NPPSF 86.2
1nu4_A97 U1A RNA binding domain; RNA recognition motif, U1 86.06
1fxl_A167 Paraneoplastic encephalomyelitis antigen HUD; prot 85.8
1fjc_A96 Nucleolin RBD2, protein C23; RNP, RRM, RNA binding 85.54
2dgp_A106 Bruno-like 4, RNA binding protein; RRM domain, str 85.43
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 85.42
2div_A99 TRNA selenocysteine associated protein; structural 85.29
2dgx_A96 KIAA0430 protein; RRM domain, structural genomics, 85.24
1wi8_A104 EIF-4B, eukaryotic translation initiation factor 4 84.67
3md3_A166 Nuclear and cytoplasmic polyadenylated RNA-bindin 84.42
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 84.33
2a3j_A127 U1 small nuclear ribonucleoprotein A; computationa 84.1
2ghp_A292 U4/U6 snRNA-associated splicing factor PRP24; RNA 84.1
2jvr_A111 Nucleolar protein 3; RNA recognition motif, nucleu 83.92
2lea_A135 Serine/arginine-rich splicing factor 2; SR protein 83.77
2cqh_A93 IGF-II mRNA-binding protein 2 isoform A; RNA recog 83.67
2cqp_A98 RNA-binding protein 12; RNA recognition motif, RRM 83.57
1rk8_A165 CG8781-PA, CG8781-PA protein; mRNA processing, RRM 83.52
2kn4_A158 Immunoglobulin G-binding protein G, splicing FACT 83.2
2dit_A112 HIV TAT specific factor 1 variant; structural geno 83.04
2ek1_A95 RNA-binding protein 12; RNA recognition motif, dim 82.81
2fc9_A101 NCL protein; structure genomics, RRM_1 domain, str 82.63
2qfj_A216 FBP-interacting repressor; protein-DNA complex; HE 82.61
1fj7_A101 Nucleolin RBD1, protein C23; RNP, RRM, RNA binding 82.16
2dng_A103 Eukaryotic translation initiation factor 4H; RRM d 82.14
2cjk_A167 Nuclear polyadenylated RNA-binding protein 4; HRP1 81.93
2lkz_A95 RNA-binding protein 5; RRM; NMR {Homo sapiens} 81.81
3u1l_A240 PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 81.73
1x5o_A114 RNA binding motif, single-stranded interacting pro 81.38
2db1_A118 Heterogeneous nuclear ribonucleoprotein F; RRM dom 81.07
2g4b_A172 Splicing factor U2AF 65 kDa subunit; protein-RNA c 80.63
3sde_A261 Paraspeckle component 1; RRM, anti parallel right 80.47
1b7f_A168 Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP 80.41
4f02_A213 Polyadenylate-binding protein 1; mRNA, eukaryotic 80.32
1jmt_A104 Splicing factor U2AF 35 kDa subunit; RRM, RNA spli 80.25
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.7e-85  Score=705.41  Aligned_cols=406  Identities=34%  Similarity=0.630  Sum_probs=310.4

Q ss_pred             CCCccccchHHHHHHHHhhhcceee------------------eeecceEEEeecCCceeEEEEEeCCHHHHHHHHhhcC
Q psy10458         18 SGNVLSKYFVPSIEYRRLEAQRSIL------------------FGTVQSMHHYTLPGQTHFVIVEMKDSQVTRRILNKCG   79 (563)
Q Consensus        18 ~~~~~~~~~~~~~~~r~~qa~rsv~------------------~G~i~~~~~~~~~~~~~~~~vef~~~~~~~~~~~~~~   79 (563)
                      .+++++|+|+|++++||+||+||||                  ||+|++||||+++|  +||||||+++++++++++++ 
T Consensus        33 ~~~~~~~~~~~~~~~r~~qa~rsv~v~~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g--~~~~vef~~~~~~~~~~~~~-  109 (464)
T 3pq1_A           33 EDKIPKRRFSEMQNERREQAQRTVLIHCPEKISENKFLKYLSQFGPINNHFFYESFG--LYAVVEFCQKESIGSLQNGT-  109 (464)
T ss_dssp             -------CCHHHHHHHHHHHHTEEEEEECCC---CHHHHHHGGGSCCCCEEEECSSS--EEEEEECC---CCHHHHSSC-
T ss_pred             ccCCCCCCHHHHHHHHHHHhcceEEEEcCCCCCHHHHHHHHHhcCCcceEEEEccCC--eEEEEEeCCHHHHHHHHhcc-
Confidence            3457899999999999999999999                  99999999999999  99999999999999998874 


Q ss_pred             ccCCCcceeccCccchhccccCcccccCcccccccccCCCCCCCCCHHHHHHHhcccccHHHHHHHHHHHcCCCHHHHHH
Q psy10458         80 HLDKSQVIPVRSPFLWFRANKNKTKLSDESDYAKINCDTHNVFPPTEDHVRECLASCNTITQQMTTLHNITKMNDINTRL  159 (563)
Q Consensus        80 ~~~~~~~~~~k~r~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~l~~qI~~l~~~~~pt~~e~~~  159 (563)
                            .+|+++.                      .       +|+.++|.+.|+++++|++||..|+++++||++|.++
T Consensus       110 ------~~p~~~~----------------------~-------~~~~~~l~~~L~~a~sl~~EI~~f~~~i~PT~eE~~~  154 (464)
T 3pq1_A          110 ------HTPXXXX----------------------X-------XXSNKQLFELLCYAESIDDQLNTLLKEFQLTEENTKL  154 (464)
T ss_dssp             ------CCCCCBC----------------------C-------C--CHHHHHHHTTSSSHHHHHHHHHHHHBCCHHHHHH
T ss_pred             ------CCCcccc----------------------c-------cCCHHHHHHHHhccchHHHHHHHHHHHhCCCHHHHHH
Confidence                  2444422                      1       4788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCceEEEEcceecCCCCCCCccceeeccccCCCCC--C--cccchhhcccccCCcchHHHHHHH
Q psy10458        160 RFLVAYQVELALSGLFPLCAIFPFGSSVNNFGKLGCDLDLVLQLDLQSQGD--N--DQCRLMFHCKSSLGSERSQTLRHL  235 (563)
Q Consensus       160 R~~v~~~L~~il~~~fp~~~V~pFGS~~~Gl~~~~SDLDl~l~~~~~~~~~--~--~~~~l~~~~k~~~~~~R~~~~~~L  235 (563)
                      |..++.+|++++++.||+++|+||||++|||++++|||||||..+......  .  .+..+.|+.|. .+++|.+++++|
T Consensus       155 R~~vv~~le~ii~~~fP~a~V~~FGS~~tGL~lp~SDIDlvl~~~~~~~~~~~~~~g~~~le~~~k~-l~seR~~~~~iL  233 (464)
T 3pq1_A          155 RYLTCSLIEDMAAAYFPDCIVRPFGSSVNTFGKLGCDLDMFLDLDETRNLSAHKISGNFLMEFQVKN-VPSERIATQKIL  233 (464)
T ss_dssp             HHHHHHHHHHHHTTTSTTCEEEEEGGGTSSCCBTTCCEEEEEECC-----CCSCEECC---EECCCC-CSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEEeCCCccCCCCCCCCeEEEEecCCcccccccccccchhhhhhhcc-chhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999876531100  0  11234566663 457899999999


Q ss_pred             HHHHHHHHhhCCCCCCCCCCCceeeEEecCCCeeEEEEeecCCcceEEEeecchhhhhhHHHHHHHhhcCCCchhHHHHH
Q psy10458        236 ETVGDLLQLFLPGCSQLFLPGCSQVKRILGARVPIIKYNHDMSALECDLSMTNLTALYMAELLYLFGEIDWRVRPLVFTI  315 (563)
Q Consensus       236 ~~l~~~L~~~~p~~s~~~~~g~~~V~~I~~ARVPIIKf~~~~~gi~~DIS~nN~~gl~nS~LL~~y~~~dpr~r~Lv~~I  315 (563)
                      +.++++|+.+.|        |+.+|+.|.+||||||||.|..+|++||||+||..|+.||+||+.|.+.||++|+|+++|
T Consensus       234 ~~la~~L~~~~~--------~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn~~gi~ns~ll~~y~~~dprlr~Lvl~v  305 (464)
T 3pq1_A          234 SVLGECLDHFGP--------GCVGVQKILNARCPLVRFSHQASGFQCALTTNNRIALTSSELLYIYGALDSRVRALVFSV  305 (464)
T ss_dssp             HHHHHHHHHSST--------TEEEEEEECSSSSCEEEEEETTTCCEEEEECSCTTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--------CCceeEEecCCCCCEEEEEEcCCCeEEEEecCCCcHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            999999999877        899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcC--CCCCchhhhhhhhcccCcceeeCCcccccccccccccCCCCCCC
Q psy10458        316 KKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEASLKDRRISEDGVNCTFVRDITKLQFHPSIPE  393 (563)
Q Consensus       316 K~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~--pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~~l~~~~~~~~  393 (563)
                      |+||+.+||+++..|||||||+|++|||||||+.  |+||+||++......++ .+.++||||.|.+|++++++     .
T Consensus       306 K~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~-~~~vdg~~~~F~~dl~~l~~-----~  379 (464)
T 3pq1_A          306 RCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAED-KCVIEGNNCTFVRDLSRIKP-----S  379 (464)
T ss_dssp             HHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC---------------------------C
T ss_pred             HHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCccc-ceeeccccccccccHhhcCC-----C
Confidence            9999999999999998899999999999999994  89999999876554333 56789999999999988764     4


Q ss_pred             CCCCCHHHHHHHHHHhhccCCCCCceEEecCCCCcCCCCCCCeEEecCCCCCCCccccCCHHhHHHHHHHHHHHHHHHHh
Q psy10458        394 QSTDSLTTLLFGFFEFYSQYDFNNQGISLYLGSPIPKPEHGALYINNPLERGLNVSKNVSFEELERLKVEVRNASWTLES  473 (563)
Q Consensus       394 ~n~~sl~~LL~~FF~fYs~Fd~~~~vIsir~G~~~~K~~~~~L~I~DPfe~~~NvarnVs~~~~~~i~~ef~~A~~~L~~  473 (563)
                      .|++++++||.+||+||++|||.+.+|||                      .+|+++||+..++++|+.++++|+|+|++
T Consensus       380 ~N~~slgeLL~gFF~yYa~FDf~~~vIsI----------------------~~Nvs~nV~~~~~~r~~~~~r~a~~il~~  437 (464)
T 3pq1_A          380 QNTETLELLLKEFFEYFGNFAXXXXXXXX----------------------XXXXXXXVSQSQLQKFVDLARESAWILQQ  437 (464)
T ss_dssp             CCCCCHHHHHHHHHHHGGGCCCCCCCCCC----------------------C-------CHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCcCCHHHHHHHHHHHHHhCCCccccccc----------------------ccccccccCHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999997                      78999999999999999999999999999


Q ss_pred             hhcCCCCCCCCCCCccccccccccCCc
Q psy10458        474 TANSNNKPSHTPSESWGLLELFKKQNL  500 (563)
Q Consensus       474 ~~~~~~~~~~~~~~~wgl~~ll~~~~~  500 (563)
                      ..+..  ++.+.+.+|||++||.|+..
T Consensus       438 ~~~~~--~~~~~~~~wgl~~ll~~~~~  462 (464)
T 3pq1_A          438 EDTDR--PSISSNRPWGLVSLLLPSAP  462 (464)
T ss_dssp             C-------------CCTTGGGCC----
T ss_pred             ccccC--cCCCCCCCcchHHHhccCcC
Confidence            88765  33456789999999999753
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster} Back     alignment and structure
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens} Back     alignment and structure
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A Back     alignment and structure
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A Back     alignment and structure
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A Back     alignment and structure
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A Back     alignment and structure
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens} Back     alignment and structure
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A Back     alignment and structure
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis} Back     alignment and structure
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Back     alignment and structure
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A Back     alignment and structure
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens} Back     alignment and structure
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Back     alignment and structure
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Back     alignment and structure
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus} Back     alignment and structure
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens} Back     alignment and structure
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Back     alignment and structure
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C Back     alignment and structure
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A* Back     alignment and structure
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B Back     alignment and structure
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens} Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Back     alignment and structure
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Back     alignment and structure
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Back     alignment and structure
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens} Back     alignment and structure
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Back     alignment and structure
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Back     alignment and structure
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Back     alignment and structure
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A Back     alignment and structure
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Back     alignment and structure
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0 Back     alignment and structure
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens} Back     alignment and structure
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B Back     alignment and structure
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Back     alignment and structure
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Back     alignment and structure
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X Back     alignment and structure
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens} Back     alignment and structure
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori} Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A Back     alignment and structure
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A Back     alignment and structure
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Back     alignment and structure
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1 Back     alignment and structure
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D* Back     alignment and structure
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Back     alignment and structure
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D* Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Back     alignment and structure
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Back     alignment and structure
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Back     alignment and structure
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A Back     alignment and structure
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A Back     alignment and structure
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Back     alignment and structure
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A Back     alignment and structure
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A Back     alignment and structure
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Back     alignment and structure
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A Back     alignment and structure
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Back     alignment and structure
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A Back     alignment and structure
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Back     alignment and structure
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A Back     alignment and structure
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A Back     alignment and structure
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1 Back     alignment and structure
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C Back     alignment and structure
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens} Back     alignment and structure
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A Back     alignment and structure
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A Back     alignment and structure
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B Back     alignment and structure
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A Back     alignment and structure
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A* Back     alignment and structure
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 563
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 5e-20
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

 Score = 85.7 bits (211), Expect = 5e-20
 Identities = 30/190 (15%), Positives = 68/190 (35%), Gaps = 35/190 (18%)

Query: 307 RVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSVKVLPPLKLLIDEASLKD 366
             R     +K W K  N+   +    +T++++T++ ++YL   + +  +           
Sbjct: 3   AARHTAMAVKAWGKATNVGAGSGA-MLTSYAVTVMFIYYLLVTRQVLWVDPW-------- 53

Query: 367 RRISEDGVNCTFVRDITKLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLG 425
                   +      + +      + +     L  LL GFF FY+  +D+  + +SL   
Sbjct: 54  --------SLPHPAHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRN 105

Query: 426 SPIPKPEHGA-------------LYINNPLERGL----NVSKNVSFEELERLKVEVRNAS 468
               + + G                I +P E       N+ +++   + + +K E   A+
Sbjct: 106 RRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGGLNLVRHLHPAKFQLVKQEFLRAA 165

Query: 469 WTLESTANSN 478
             +E    +N
Sbjct: 166 QCMERFLPTN 175

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query563
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.96
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 99.77
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 99.76
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 99.74
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 99.71
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.22
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.21
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 98.06
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 98.03
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.76
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 97.56
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 96.61
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 96.51
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 95.92
d1zh5a285 Lupus LA protein {Human (Homo sapiens) [TaxId: 960 95.84
d1x4ga196 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 95.82
d1l3ka184 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 95.3
d1hd0a_75 Heterogeneous nuclear ribonucleoprotein d0 {Human 95.27
d2cpja186 Non-POU domain-containing octamer-binding protein, 95.1
d2cq4a1101 RNA binding protein 23 {Human (Homo sapiens) [TaxI 94.86
d1x4ba1103 Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu 94.68
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 94.67
d2bz2a179 Negative elongation factor E, NELF-E {Human (Homo 94.58
d1x0fa175 Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s 94.34
d1p1ta_104 Cleavage stimulation factor, 64 kda subunit {Human 94.3
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 94.22
d1wexa_104 Heterogeneous nuclear ribonucleoprotein L-like {Mo 94.15
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 94.04
d1x4fa199 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 93.92
d1l3ka279 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 93.9
d2adca1109 Polypyrimidine tract-binding protein {Human (Homo 93.5
d2adca288 Polypyrimidine tract-binding protein {Human (Homo 93.48
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 93.43
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 93.12
d2ghpa386 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 93.08
d1whya_97 Putative RNA-binding protein 15B, Rbm15b {Mouse (M 92.97
d2cq1a188 Polypyrimidine tract-binding protein 2, PTBP2 {Hum 92.92
d1x4ha198 RNA-binding protein 28 {Mouse (Mus musculus) [TaxI 92.88
d2cqda1103 RNA-binding region containing protein 1 {Human (Ho 92.82
d1wwha181 Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090 92.65
d2cq0a190 Eukaryotic translation initiation factor 3 subunit 92.45
d1fxla182 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 92.39
d2cqga190 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 92.34
d1whxa_111 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 92.27
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 92.21
d2cqba189 Peptidyl-prolyl cis-trans isomerase E, N-terminal 91.97
d1x5ua193 Splicing factor 3B subunit 4 {Human (Homo sapiens) 91.95
d1fjca_96 Nucleolin {Golden hamster (Mesocricetus auratus) [ 91.85
d2cqca183 Arginine/serine-rich splicing factor 10 {Human (Ho 91.73
d1x5sa190 Cold-inducible RNA-binding protein {Human (Homo sa 91.71
d2adba1108 Polypyrimidine tract-binding protein {Human (Homo 91.69
d1wf0a_88 TAR DNA-binding protein 43, TDP-43 {Human (Homo sa 91.66
d1x4da189 Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} 91.63
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 91.56
d1wf2a_98 Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu 91.5
d1u6fa1139 RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId 91.41
d1b7fa285 Sex-lethal protein {Drosophila melanogaster [TaxId 91.18
d2cq2a1101 Alkylation repair AlkB homolog 8, ALKBH8 {Human (H 91.14
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 91.0
d2cpda186 APOBEC1 stimulating protein {Human (Homo sapiens) 90.67
d1fxla285 Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9 90.6
d1h2vz_93 CBP20, 20KDa nuclear cap-binding protein {Human (H 90.55
d1cvja180 Poly(A)-binding protein {Human (Homo sapiens) [Tax 90.5
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 90.49
d1b7fa182 Sex-lethal protein {Drosophila melanogaster [TaxId 90.48
d1weya_104 Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090 90.28
d2b0ga183 Splicesomal U1A protein {Drosophila melanogaster [ 90.26
d2cqha180 IGF-II mRNA-binding protein 2 isoform A {Human (Ho 90.21
d1whwa_99 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 90.06
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 89.78
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 89.49
d2cpha194 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 89.45
d1u1qa_183 Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human 88.55
d1x4ea172 RNA-binding motif, single-stranded-interacting pro 88.44
d2cpfa185 Probable RNA-binding protein 19, Rbm19 {Mouse (Mus 88.39
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 88.02
d2ghpa181 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 87.95
d1wi6a175 Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M 87.75
d3begb187 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 87.72
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 87.44
d2u2fa_85 Splicing factor U2AF 65 KDa subunit {Human (Homo s 87.42
d1rk8a_88 RNA-binding protein 8 {Fruit fly (Drosophila melan 87.21
d1nu4a_91 Splicesomal U1A protein {Human (Homo sapiens) [Tax 87.09
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 86.92
d2cpza1102 CUG triplet repeat RNA-binding protein 1 {Human (H 86.34
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 86.22
d1wg1a_88 Probable RNA-binding protein KIAA1579 {Human (Homo 85.41
d1x5ta183 Splicing factor 3B subunit 4 {Human (Homo sapiens) 84.95
d1wg4a_98 Splicing factor, arginine/serine-rich 9 (SFRS9) {M 84.82
d2cpia189 E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc 84.63
d1x5oa1101 RNA-binding motif, single-stranded-interacting pro 84.62
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 84.36
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 83.88
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 83.77
d2cpea1101 RNA-binding protein EWS {Human (Homo sapiens) [Tax 81.42
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: RNA editing terminal uridyl transferase 2, RET2, domain 2
domain: RNA editing terminal uridyl transferase 2, TUTase 2, RET2
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.96  E-value=1.3e-29  Score=239.49  Aligned_cols=154  Identities=22%  Similarity=0.363  Sum_probs=119.0

Q ss_pred             CCchhHHHHHHHHHHHcCCCCCCCCCCcChHHHHHHHHHHhhcC--CCCCchhhhhhhhcccCcceeeCCcccccccccc
Q psy10458        306 WRVRPLVFTIKKWAKDINLTNPTPGRWITNFSLTLLVLFYLQSV--KVLPPLKLLIDEASLKDRRISEDGVNCTFVRDIT  383 (563)
Q Consensus       306 pr~r~Lv~~IK~Wak~~gL~~~~~G~~LsSYsL~LLVI~fLQ~~--pvLP~Lq~l~~~~~~~d~~~~~~g~d~~F~~d~~  383 (563)
                      |++|+|+++||+|||++||+++..|| ||||+|++|||||||+.  +++|+.+++......                  .
T Consensus         2 P~~R~l~~~vK~Wak~~~i~~~~~G~-lsSYal~lmvi~fLQ~~~~~~~~~~~~~~~~~~~------------------~   62 (183)
T d2b4va1           2 VAARHTAMAVKAWGKATNVGAGSGAM-LTSYAVTVMFIYYLLVTRQVLWVDPWSLPHPAHL------------------P   62 (183)
T ss_dssp             TTHHHHHHHHHHHHHTCC-----CCS-SCHHHHHHHHHHHHHHTTSSCCCCGGGSCCGGGS------------------C
T ss_pred             cceeeHHHHHHHHHHHcCCCCccCCC-chHHHHHHHHHHHHHhcCCCCCCCHHHhcccccc------------------c
Confidence            79999999999999999999999997 99999999999999994  566666554321110                  0


Q ss_pred             cccCCCCCCCCCCCCHHHHHHHHHHhhc-cCCCCCceEEecCCCCcCCC-------------CCCCeEEecCCCC----C
Q psy10458        384 KLQFHPSIPEQSTDSLTTLLFGFFEFYS-QYDFNNQGISLYLGSPIPKP-------------EHGALYINNPLER----G  445 (563)
Q Consensus       384 ~l~~~~~~~~~n~~sl~~LL~~FF~fYs-~Fd~~~~vIsir~G~~~~K~-------------~~~~L~I~DPfe~----~  445 (563)
                      .......+.+.|..+|++||.+||+||+ +|||.+.+|+++.|..++|.             ...+|+|+|||++    +
T Consensus        63 ~~~~~~~~~~~~~~sl~~Ll~~FF~~Y~~~fd~~~~~Isi~~g~~~~k~~~~~~~~~~~~~~~~~~l~IeDPfd~~~~~~  142 (183)
T d2b4va1          63 RYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVSLNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYEDVGTGG  142 (183)
T ss_dssp             SSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBCSSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSSTTTTTTC
T ss_pred             cccccccccCCCCCCHHHHHHHHHHHhccccCHHHceeeeccCCccchhhhhccccccCCCCCCcceEEeCCCccccccc
Confidence            0111112235778899999999999999 89999999999999886542             2467999999996    4


Q ss_pred             CCccccCCHHhHHHHHHHHHHHHHHHHhhhcCC
Q psy10458        446 LNVSKNVSFEELERLKVEVRNASWTLESTANSN  478 (563)
Q Consensus       446 ~NvarnVs~~~~~~i~~ef~~A~~~L~~~~~~~  478 (563)
                      +|+||+++...+.+|+.+|++|+++|+.....+
T Consensus       143 ~Nv~r~v~~~~~~~I~~~f~~a~~~l~~~~~~~  175 (183)
T d2b4va1         143 LNLVRHLHPAKFQLVKQEFLRAAQCMERFLPTN  175 (183)
T ss_dssp             CBTTTTCCHHHHHHHHHHHHHHHHHHHHCCTTT
T ss_pred             cchhhhcCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            677777888899999999999999999866543
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure