Psyllid ID: psy10468

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKWDS
cHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cEEEEHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIaffdstrtgelvdsakpniknklnpiHNHVIRMITgafrssplnsihAESMVLGTLYFgghlmasntltaGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDiaffdstrtgelvDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLiispsltlgmlgiVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAfamepyevrLFTDQVSLSCTLQERLGVGVGMFQAgtnlflngkkwds
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRtgelvdsakpniknklnpiHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAkavtigeeaisNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAgtnlflngkkwds
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVsslliispsltlGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKWDS
**LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG*****
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGEL**********KLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKWD*
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLS**********VTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKWDS
AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTR****************NPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKWDS
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AALLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFESILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKKWDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q56A55 714 ATP-binding cassette sub- yes N/A 0.501 0.256 0.502 2e-43
Q9CXJ4 717 ATP-binding cassette sub- yes N/A 0.526 0.267 0.487 5e-41
Q5RKI8 714 ATP-binding cassette sub- yes N/A 0.490 0.250 0.488 1e-40
B2GUP8 688 ATP-binding cassette sub- yes N/A 0.490 0.260 0.513 2e-37
Q9NUT2 735 ATP-binding cassette sub- yes N/A 0.528 0.262 0.453 7e-37
Q5RFQ9 718 ATP-binding cassette sub- yes N/A 0.528 0.268 0.453 3e-36
Q54W24 767 ABC transporter B family yes N/A 0.413 0.196 0.438 5e-32
Q54BU4 909 ABC transporter B family no N/A 0.457 0.183 0.382 3e-26
Q9JI39 715 ATP-binding cassette sub- no N/A 0.391 0.2 0.444 7e-25
Q9NRK6 738 ATP-binding cassette sub- no N/A 0.391 0.193 0.430 2e-24
>sp|Q56A55|ABCB8_DANRE ATP-binding cassette sub-family B member 8, mitochondrial OS=Danio rerio GN=abcb8 PE=2 SV=1 Back     alignment and function desciption
 Score =  177 bits (448), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/185 (50%), Positives = 126/185 (68%), Gaps = 2/185 (1%)

Query: 177 AQMSLLFGSYIKGLSS-GARIF-QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEF 234
           A   LL   YI  LS  G R+   +R  LF S+L+QDIAFFD+ +TG+LV+RLT+D+QEF
Sbjct: 201 ALQGLLTSGYIILLSRVGERVAADMRTTLFTSLLRQDIAFFDANKTGQLVNRLTSDIQEF 260

Query: 235 KSSFKLVVSQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSRE 294
           KSSFKLV+SQGLR+  Q +G   SL  ISP LT   + ++P ++ +G  IGS LR LSR+
Sbjct: 261 KSSFKLVISQGLRSATQTVGCFVSLYFISPKLTGLTVVVLPCLVGAGALIGSFLRKLSRK 320

Query: 295 AQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGT 354
           AQ Q AKA  + +EA+ N+RTVRAFAME  E+ ++  +V  S  + E LG G+ +FQ  +
Sbjct: 321 AQEQVAKATGVADEALGNVRTVRAFAMEDRELEMYAAEVQKSAAMNETLGTGIAVFQGLS 380

Query: 355 NLFLN 359
           N+ LN
Sbjct: 381 NIVLN 385

Danio rerio (taxid: 7955)
>sp|Q9CXJ4|ABCB8_MOUSE ATP-binding cassette sub-family B member 8, mitochondrial OS=Mus musculus GN=Abcb8 PE=2 SV=1 Back     alignment and function description
>sp|Q5RKI8|ABCB8_RAT ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1 Back     alignment and function description
>sp|B2GUP8|ABCB8_XENTR ATP-binding cassette sub-family B member 8, mitochondrial OS=Xenopus tropicalis GN=abcb8 PE=2 SV=1 Back     alignment and function description
>sp|Q9NUT2|ABCB8_HUMAN ATP-binding cassette sub-family B member 8, mitochondrial OS=Homo sapiens GN=ABCB8 PE=1 SV=3 Back     alignment and function description
>sp|Q5RFQ9|ABCB8_PONAB ATP-binding cassette sub-family B member 8, mitochondrial OS=Pongo abelii GN=ABCB8 PE=2 SV=1 Back     alignment and function description
>sp|Q54W24|ABCB4_DICDI ABC transporter B family member 4 OS=Dictyostelium discoideum GN=abcB4 PE=3 SV=1 Back     alignment and function description
>sp|Q54BU4|ABCB1_DICDI ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1 Back     alignment and function description
>sp|Q9JI39|ABCBA_MOUSE ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1 Back     alignment and function description
>sp|Q9NRK6|ABCBA_HUMAN ATP-binding cassette sub-family B member 10, mitochondrial OS=Homo sapiens GN=ABCB10 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
357613192162 hypothetical protein KGM_21535 [Danaus p 0.443 1.0 0.623 7e-47
383858748 694 PREDICTED: ATP-binding cassette sub-fami 0.479 0.252 0.553 8e-47
115533592 668 Protein HAF-6 [Caenorhabditis elegans] g 0.443 0.242 0.558 1e-46
91086531 599 PREDICTED: similar to CG1824 CG1824-PA [ 0.479 0.292 0.559 1e-45
242001904 677 SMDR1, putative [Ixodes scapularis] gi|2 0.479 0.258 0.542 1e-44
321470040 688 ABC transporter [Daphnia pulex] 0.504 0.267 0.566 1e-44
332020849 695 ATP-binding cassette sub-family B member 0.504 0.264 0.529 4e-44
405957922 700 ATP-binding cassette sub-family B member 0.441 0.23 0.546 8e-44
443706343 731 hypothetical protein CAPTEDRAFT_155008 [ 0.441 0.220 0.546 1e-43
350427088 695 PREDICTED: ATP-binding cassette sub-fami 0.479 0.251 0.519 1e-43
>gi|357613192|gb|EHJ68362.1| hypothetical protein KGM_21535 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  194 bits (492), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 101/162 (62%), Positives = 120/162 (74%)

Query: 199 LRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVSS 258
           ++  LF SIL+QDIAFFD  RTGELV+R+T DVQ+FKSSFK  +S GLR   QV+G+  S
Sbjct: 1   MKQDLFVSILQQDIAFFDQERTGELVNRITVDVQDFKSSFKQTISGGLRAITQVVGSAVS 60

Query: 259 LLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRA 318
           LL+ISP LT   L  VP V+I GTFIGSLLR LSREAQ Q  K   + EEAISNI+TVRA
Sbjct: 61  LLVISPHLTGLTLICVPSVVIGGTFIGSLLRKLSREAQAQIEKTTLVAEEAISNIKTVRA 120

Query: 319 FAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG 360
           FA E  E R+F D+ + +  L   LG+GVG+FQAGTNLFLNG
Sbjct: 121 FAGEDNEARMFRDECNAAAELSMELGLGVGLFQAGTNLFLNG 162

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383858748|ref|XP_003704861.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|115533592|ref|NP_490828.3| Protein HAF-6 [Caenorhabditis elegans] gi|351051261|emb|CCD73466.1| Protein HAF-6 [Caenorhabditis elegans] Back     alignment and taxonomy information
>gi|91086531|ref|XP_972133.1| PREDICTED: similar to CG1824 CG1824-PA [Tribolium castaneum] gi|270010345|gb|EFA06793.1| hypothetical protein TcasGA2_TC009730 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242001904|ref|XP_002435595.1| SMDR1, putative [Ixodes scapularis] gi|215498931|gb|EEC08425.1| SMDR1, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|321470040|gb|EFX81018.1| ABC transporter [Daphnia pulex] Back     alignment and taxonomy information
>gi|332020849|gb|EGI61247.1| ATP-binding cassette sub-family B member 8, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|405957922|gb|EKC24099.1| ATP-binding cassette sub-family B member 8, mitochondrial [Crassostrea gigas] Back     alignment and taxonomy information
>gi|443706343|gb|ELU02451.1| hypothetical protein CAPTEDRAFT_155008 [Capitella teleta] Back     alignment and taxonomy information
>gi|350427088|ref|XP_003494648.1| PREDICTED: ATP-binding cassette sub-family B member 8, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
WB|WBGene00001816 668 haf-6 [Caenorhabditis elegans 0.504 0.275 0.508 1.4e-40
UNIPROTKB|Q9BL17 668 haf-6 "Protein HAF-6" [Caenorh 0.504 0.275 0.508 1.4e-40
ZFIN|ZDB-GENE-050410-6 714 abcb8 "ATP-binding cassette, s 0.501 0.256 0.464 2.1e-37
MGI|MGI:1351667 717 Abcb8 "ATP-binding cassette, s 0.526 0.267 0.451 5.3e-35
RGD|1307655 714 Abcb8 "ATP-binding cassette, s 0.526 0.268 0.446 1.1e-34
UNIPROTKB|C9JYI3409 ABCB8 "ATP-binding cassette su 0.526 0.469 0.435 2e-33
UNIPROTKB|E7ENE8467 ABCB8 "ATP-binding cassette su 0.526 0.411 0.435 2e-33
UNIPROTKB|C9JTY4431 ABCB8 "ATP-binding cassette, s 0.526 0.445 0.435 2e-33
FB|FBgn0030403 761 CG1824 [Drosophila melanogaste 0.526 0.252 0.448 2.8e-33
UNIPROTKB|I3LMV8 718 ABCB8 "Uncharacterized protein 0.526 0.267 0.435 3e-33
WB|WBGene00001816 haf-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 435 (158.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 95/187 (50%), Positives = 128/187 (68%)

Query:   176 MAQMSLLFGSYIKGLSS-GARIF-QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQE 233
             +AQ +L F  YI  L+  G R+  ++R  LF+ +L  D+AFFDS ++GEL  RL  DVQE
Sbjct:   156 VAQSALTF-LYITFLTVLGERMATKMRSDLFQKLLHHDMAFFDSHKSGELSARLNADVQE 214

Query:   234 FKSSFKLVVSQGLRNGAQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSR 293
             FKSSFKL VSQGLR  AQ IG +              + +VP +I++G+ IG+ LR LSR
Sbjct:   215 FKSSFKLCVSQGLRTFAQTIGCIGSLYFLSPTMTMYTVAVVPGIILAGSAIGAGLRQLSR 274

Query:   294 EAQNQAAKAVTIGEEAISNIRTVRAFAMEPYEVRLFTDQVSLSCTLQERLGVGVGMFQAG 353
              AQ Q+A A  + +EA++NIRT+RAFAME  E RLF +++  +  +QE+LGVG+G+FQAG
Sbjct:   275 RAQGQSATASAVSDEALTNIRTIRAFAMEKLESRLFDNELDKARAMQEQLGVGIGLFQAG 334

Query:   354 TNLFLNG 360
             TNLFLNG
Sbjct:   335 TNLFLNG 341
GO:0005524 "ATP binding" evidence=IEA
GO:0006810 "transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0016887 "ATPase activity" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0016246 "RNA interference" evidence=IGI;IMP
UNIPROTKB|Q9BL17 haf-6 "Protein HAF-6" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050410-6 abcb8 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1351667 Abcb8 "ATP-binding cassette, sub-family B (MDR/TAP), member 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307655 Abcb8 "ATP-binding cassette, subfamily B (MDR/TAP), member 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|C9JYI3 ABCB8 "ATP-binding cassette sub-family B member 8, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E7ENE8 ABCB8 "ATP-binding cassette sub-family B member 8, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JTY4 ABCB8 "ATP-binding cassette, sub-family B (MDR/TAP), member 8, isoform CRA_c" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0030403 CG1824 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|I3LMV8 ABCB8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q56A55ABCB8_DANRENo assigned EC number0.50270.50130.2563yesN/A
B2GUP8ABCB8_XENTRNo assigned EC number0.51380.49040.2601yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
TIGR00958 711 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) 2e-26
pfam00664274 pfam00664, ABC_membrane, ABC transporter transmemb 9e-26
TIGR02204 576 TIGR02204, MsbA_rel, ABC transporter, permease/ATP 3e-24
COG1132 567 COG1132, MdlB, ABC-type multidrug transport system 2e-19
TIGR02203 571 TIGR02203, MsbA_lipidA, lipid A export permease/AT 5e-16
COG1132 567 COG1132, MdlB, ABC-type multidrug transport system 4e-09
PRK11176 582 PRK11176, PRK11176, lipid transporter ATP-binding/ 4e-09
COG2274 709 COG2274, SunT, ABC-type bacteriocin/lantibiotic ex 1e-08
TIGR00958 711 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) 3e-05
pfam00664274 pfam00664, ABC_membrane, ABC transporter transmemb 1e-04
TIGR02204 576 TIGR02204, MsbA_rel, ABC transporter, permease/ATP 1e-04
COG1132567 COG1132, MdlB, ABC-type multidrug transport system 2e-04
TIGR01846 694 TIGR01846, type_I_sec_HlyB, type I secretion syste 3e-04
TIGR01193 708 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t 3e-04
TIGR00958711 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) 7e-04
PRK10790 592 PRK10790, PRK10790, putative multidrug transporter 0.003
TIGR01271 1490 TIGR01271, CFTR_protein, cystic fibrosis transmemb 0.004
TIGR00957 1522 TIGR00957, MRP_assoc_pro, multi drug resistance-as 0.004
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information 
 Score =  110 bits (276), Expect = 2e-26
 Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 2/143 (1%)

Query: 198 QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNGAQVIGAVS 257
           ++R  LF S+L+QD+ FFD  +TGEL  RL++D Q    S  L V+  LRN   ++G + 
Sbjct: 235 RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLG 294

Query: 258 SLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVR 317
            +L +SP LT+  L  +P+V ++    G   + LS E Q   AKA  + EEA+S +RTVR
Sbjct: 295 FMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVR 354

Query: 318 AFAMEPYEVRLFTDQVSLSCTLQ 340
           +FA E  E   F  + +L  TLQ
Sbjct: 355 SFAAEEGEASRF--KEALEETLQ 375

[Transport and binding proteins, Other]. Length = 711
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region Back     alignment and domain information
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region Back     alignment and domain information
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter Back     alignment and domain information
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
KOG0055|consensus 1228 99.94
KOG0058|consensus 716 99.94
PF00664275 ABC_membrane: ABC transporter transmembrane region 99.93
PRK11174 588 cysteine/glutathione ABC transporter membrane/ATP- 99.89
COG2274 709 SunT ABC-type bacteriocin/lantibiotic exporters, c 99.88
TIGR02857 529 CydD thiol reductant ABC exporter, CydD subunit. U 99.88
TIGR00958 711 3a01208 Conjugate Transporter-2 (CT2) Family prote 99.87
TIGR02868 529 CydC thiol reductant ABC exporter, CydC subunit. T 99.87
PRK11160 574 cysteine/glutathione ABC transporter membrane/ATP- 99.87
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 99.86
TIGR01846 694 type_I_sec_HlyB type I secretion system ABC transp 99.86
TIGR01192 585 chvA glucan exporter ATP-binding protein. This mod 99.86
TIGR01193 708 bacteriocin_ABC ABC-type bacteriocin transporter. 99.86
PRK10789 569 putative multidrug transporter membrane\ATP-bindin 99.86
TIGR03797 686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 99.85
TIGR02203 571 MsbA_lipidA lipid A export permease/ATP-binding pr 99.85
TIGR03375 694 type_I_sec_LssB type I secretion system ATPase, Ls 99.85
TIGR03796 710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 99.85
COG4988 559 CydD ABC-type transport system involved in cytochr 99.84
PRK11176 582 lipid transporter ATP-binding/permease protein; Pr 99.84
TIGR02204 576 MsbA_rel ABC transporter, permease/ATP-binding pro 99.82
PRK10790 592 putative multidrug transporter membrane\ATP-bindin 99.82
TIGR00954 659 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA 99.81
PRK13657 588 cyclic beta-1,2-glucan ABC transporter; Provisiona 99.81
TIGR01194 555 cyc_pep_trnsptr cyclic peptide transporter. This m 99.8
PTZ00265 1466 multidrug resistance protein (mdr1); Provisional 99.79
TIGR01842 544 type_I_sec_PrtD type I secretion system ABC transp 99.79
COG1132 567 MdlB ABC-type multidrug transport system, ATPase a 99.78
KOG0055|consensus 1228 99.75
PRK10522 547 multidrug transporter membrane component/ATP-bindi 99.74
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 99.73
COG4987 573 CydC ABC-type transport system involved in cytochr 99.69
PLN03130 1622 ABC transporter C family member; Provisional 99.66
KOG0054|consensus 1381 99.66
PTZ00243 1560 ABC transporter; Provisional 99.65
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 99.62
KOG0057|consensus 591 99.59
PLN03232 1495 ABC transporter C family member; Provisional 99.59
TIGR01271 1490 CFTR_protein cystic fibrosis transmembrane conduct 99.59
PLN03232 1495 ABC transporter C family member; Provisional 99.58
PLN03130 1622 ABC transporter C family member; Provisional 99.57
TIGR00957 1522 MRP_assoc_pro multi drug resistance-associated pro 99.56
PTZ00243 1560 ABC transporter; Provisional 99.55
KOG0056|consensus 790 99.52
COG4615 546 PvdE ABC-type siderophore export system, fused ATP 99.46
KOG0054|consensus 1381 99.41
COG4618 580 ArpD ABC-type protease/lipase transport system, AT 99.31
PF06472281 ABC_membrane_2: ABC transporter transmembrane regi 99.23
COG5265 497 ATM1 ABC-type transport system involved in Fe-S cl 99.12
KOG0058|consensus 716 99.11
PF13748237 ABC_membrane_3: ABC transporter transmembrane regi 98.76
TIGR00958711 3a01208 Conjugate Transporter-2 (CT2) Family prote 98.62
COG4178 604 ABC-type uncharacterized transport system, permeas 98.59
COG2274 709 SunT ABC-type bacteriocin/lantibiotic exporters, c 98.57
TIGR02868529 CydC thiol reductant ABC exporter, CydC subunit. T 98.56
TIGR01846694 type_I_sec_HlyB type I secretion system ABC transp 98.49
COG4987 573 CydC ABC-type transport system involved in cytochr 98.48
TIGR01193708 bacteriocin_ABC ABC-type bacteriocin transporter. 98.45
PRK10789 569 putative multidrug transporter membrane\ATP-bindin 98.45
TIGR03797686 NHPM_micro_ABC2 NHPM bacteriocin system ABC transp 98.42
PF00664275 ABC_membrane: ABC transporter transmembrane region 98.42
TIGR03796710 NHPM_micro_ABC1 NHPM bacteriocin system ABC transp 98.4
TIGR01192 585 chvA glucan exporter ATP-binding protein. This mod 98.39
TIGR01194555 cyc_pep_trnsptr cyclic peptide transporter. This m 98.37
TIGR03375694 type_I_sec_LssB type I secretion system ATPase, Ls 98.37
TIGR02857529 CydD thiol reductant ABC exporter, CydD subunit. U 98.36
TIGR02203571 MsbA_lipidA lipid A export permease/ATP-binding pr 98.35
COG1132567 MdlB ABC-type multidrug transport system, ATPase a 98.33
PRK11176582 lipid transporter ATP-binding/permease protein; Pr 98.29
PRK12369326 putative transporter; Reviewed 98.28
PRK11098409 microcin B17 transporter; Reviewed 98.26
TIGR02204576 MsbA_rel ABC transporter, permease/ATP-binding pro 98.22
PRK13657 588 cyclic beta-1,2-glucan ABC transporter; Provisiona 98.17
PRK11160 574 cysteine/glutathione ABC transporter membrane/ATP- 98.17
PRK11174 588 cysteine/glutathione ABC transporter membrane/ATP- 98.08
COG4988559 CydD ABC-type transport system involved in cytochr 98.05
PRK10790 592 putative multidrug transporter membrane\ATP-bindin 97.97
PRK10522 547 multidrug transporter membrane component/ATP-bindi 97.85
KOG0060|consensus 659 97.69
COG4615 546 PvdE ABC-type siderophore export system, fused ATP 97.55
TIGR01842544 type_I_sec_PrtD type I secretion system ABC transp 97.46
KOG0064|consensus 728 97.35
KOG0057|consensus591 96.4
TIGR00954 659 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA 96.17
COG5265497 ATM1 ABC-type transport system involved in Fe-S cl 95.77
PF06472281 ABC_membrane_2: ABC transporter transmembrane regi 93.96
KOG0056|consensus 790 91.99
PF05992315 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009 83.64
>KOG0055|consensus Back     alignment and domain information 
Probab=99.94  E-value=9.4e-24  Score=205.91  Aligned_cols=198  Identities=23%  Similarity=0.305  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccc-cCccchhhhhhhhHHHHHHHHHHHHH
Q psy10468        165 FLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDS-TRTGELVDRLTTDVQEFKSSFKLVVS  243 (365)
Q Consensus       165 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~-~~~g~l~~~~~~d~~~i~~~~~~~~~  243 (365)
                      .+.+++.+......+..+++.+.....+.....++|.+.|++++++|.+|||+ +++|.+.+|+.+|..+++..+...+.
T Consensus       708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~  787 (1228)
T KOG0055|consen  708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLS  787 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHH
Confidence            37777888888899999999999999999999999999999999999999996 34499999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCch
Q psy10468        244 QGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAMEP  323 (365)
Q Consensus       244 ~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~  323 (365)
                      .+++++..++..+++.++++|+++++++...|+..+......+.......+..++.++..+...|.++|+|||++++.|+
T Consensus       788 ~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~  867 (1228)
T KOG0055|consen  788 LVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEE  867 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcccc
Q psy10468        324 YEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNGKK  362 (365)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (365)
                      ++.+.|.+..++..+...+...+.+...++.+.+.++.+
T Consensus       868 ~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~  906 (1228)
T KOG0055|consen  868 KFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVY  906 (1228)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887654

>KOG0058|consensus Back     alignment and domain information
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter Back     alignment and domain information
>PTZ00265 multidrug resistance protein (mdr1); Provisional Back     alignment and domain information
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>KOG0055|consensus Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>KOG0054|consensus Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>KOG0057|consensus Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) Back     alignment and domain information
>PLN03232 ABC transporter C family member; Provisional Back     alignment and domain information
>PLN03130 ABC transporter C family member; Provisional Back     alignment and domain information
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) Back     alignment and domain information
>PTZ00243 ABC transporter; Provisional Back     alignment and domain information
>KOG0056|consensus Back     alignment and domain information
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0054|consensus Back     alignment and domain information
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] Back     alignment and domain information
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0058|consensus Back     alignment and domain information
>PF13748 ABC_membrane_3: ABC transporter transmembrane region Back     alignment and domain information
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein Back     alignment and domain information
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] Back     alignment and domain information
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] Back     alignment and domain information
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit Back     alignment and domain information
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family Back     alignment and domain information
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter Back     alignment and domain information
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein Back     alignment and domain information
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein Back     alignment and domain information
>TIGR01192 chvA glucan exporter ATP-binding protein Back     alignment and domain information
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter Back     alignment and domain information
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family Back     alignment and domain information
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit Back     alignment and domain information
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA Back     alignment and domain information
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] Back     alignment and domain information
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional Back     alignment and domain information
>PRK12369 putative transporter; Reviewed Back     alignment and domain information
>PRK11098 microcin B17 transporter; Reviewed Back     alignment and domain information
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein Back     alignment and domain information
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Back     alignment and domain information
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed Back     alignment and domain information
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional Back     alignment and domain information
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Back     alignment and domain information
>KOG0060|consensus Back     alignment and domain information
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family Back     alignment and domain information
>KOG0064|consensus Back     alignment and domain information
>KOG0057|consensus Back     alignment and domain information
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei Back     alignment and domain information
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information
>KOG0056|consensus Back     alignment and domain information
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
4ayt_A 595 Structure Of The Human Mitochondrial Abc Transporte 7e-22
4ayw_A 619 Structure Of The Human Mitochondrial Abc Transporte 8e-22
3b5y_A 582 Crystal Structure Of Msba From Salmonella Typhimuri 6e-10
3g5u_A 1284 Structure Of P-Glycoprotein Reveals A Molecular Bas 1e-09
3g60_A 1284 Structure Of P-Glycoprotein Reveals A Molecular Bas 1e-09
3b5w_A 582 Crystal Structure Of Eschericia Coli Msba Length = 4e-09
3b5x_A 582 Crystal Structure Of Msba From Vibrio Cholerae Leng 1e-08
4f4c_A 1321 The Crystal Structure Of The Multi-Drug Transporter 3e-07
3qf4_B 598 Crystal Structure Of A Heterodimeric Abc Transporte 3e-07
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 Back     alignment and structure 
Iteration: 1

 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Query: 191 SSGARIF-QLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVVSQGLRNG 249
           +SG RI  +LR  LF SIL+Q++AFFD TRTGEL++RL++D      S    +S GLR G
Sbjct: 88  TSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 250 AQVIGAVXXXXXXXXXXXXGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEA 309
           AQ    +             +L +VP V I     G  LR L++  Q+  A+A  + EE 
Sbjct: 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 207
Query: 310 ISNIRTVRAFAMEPYEVRLFTDQV 333
           I N+RTVRAF  E  E+  +  +V
Sbjct: 208 IGNVRTVRAFGKEMTEIEKYASKV 231
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 Back     alignment and structure
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 Back     alignment and structure
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 Back     alignment and structure
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 Back     alignment and structure
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 Back     alignment and structure
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 Back     alignment and structure
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 Back     alignment and structure
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
2yl4_A 595 ATP-binding cassette SUB-family B member 10, mitoc 4e-51
2yl4_A 595 ATP-binding cassette SUB-family B member 10, mitoc 1e-21
2yl4_A 595 ATP-binding cassette SUB-family B member 10, mitoc 2e-11
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 2e-32
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 5e-24
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 2e-13
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 5e-06
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 5e-04
3b60_A 582 Lipid A export ATP-binding/permease protein MSBA; 3e-31
3b60_A 582 Lipid A export ATP-binding/permease protein MSBA; 4e-11
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 1e-07
3b5x_A 582 Lipid A export ATP-binding/permease protein MSBA; 1e-29
3b5x_A 582 Lipid A export ATP-binding/permease protein MSBA; 7e-11
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 8e-07
4a82_A 578 Cystic fibrosis transmembrane conductance regulat; 3e-27
4a82_A 578 Cystic fibrosis transmembrane conductance regulat; 2e-11
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 7e-07
3qf4_B 598 Uncharacterized ABC transporter ATP-binding prote 4e-17
3qf4_B 598 Uncharacterized ABC transporter ATP-binding prote 1e-07
3qf4_A 587 ABC transporter, ATP-binding protein; multidrug tr 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 99.94
3qf4_B 598 Uncharacterized ABC transporter ATP-binding prote 99.9
3b5x_A 582 Lipid A export ATP-binding/permease protein MSBA; 99.9
3qf4_A 587 ABC transporter, ATP-binding protein; multidrug tr 99.89
3b60_A 582 Lipid A export ATP-binding/permease protein MSBA; 99.89
2yl4_A 595 ATP-binding cassette SUB-family B member 10, mitoc 99.88
4a82_A 578 Cystic fibrosis transmembrane conductance regulat; 99.88
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 99.86
4f4c_A 1321 Multidrug resistance protein PGP-1; ABC transporte 99.83
3g5u_A 1284 MCG1178, multidrug resistance protein 1A; P-glycop 99.75
3b60_A582 Lipid A export ATP-binding/permease protein MSBA; 98.67
3b5x_A582 Lipid A export ATP-binding/permease protein MSBA; 98.65
3qf4_B598 Uncharacterized ABC transporter ATP-binding prote 98.64
3qf4_A 587 ABC transporter, ATP-binding protein; multidrug tr 98.64
2yl4_A 595 ATP-binding cassette SUB-family B member 10, mitoc 98.62
4a82_A578 Cystic fibrosis transmembrane conductance regulat; 98.62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
Probab=99.94  E-value=2.7e-24  Score=221.72  Aligned_cols=189  Identities=22%  Similarity=0.332  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccc--cCccchhhhhhhhHHHHHHHHHHHH
Q psy10468        165 FLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDS--TRTGELVDRLTTDVQEFKSSFKLVV  242 (365)
Q Consensus       165 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~--~~~g~l~~~~~~d~~~i~~~~~~~~  242 (365)
                      ++.+++.++..+..+..++..+.....+.+...++|.++++++++.|++||+.  +++|++++|+++|++.++..+...+
T Consensus       795 ~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l  874 (1321)
T 4f4c_A          795 FWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRF  874 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHH
Confidence            34555666677788889999999999999999999999999999999999986  6789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468        243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME  322 (365)
Q Consensus       243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~  322 (365)
                      ..++..++.+++.++++++.+|+++++++++.|+..+......++.++...+..+..++......|.++|+++||+|+.|
T Consensus       875 ~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e  954 (1321)
T 4f4c_A          875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE  954 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH
T ss_pred             HHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccch
Confidence            99999999999999999999999999999999999998888888888888888888899999999999999999999999


Q ss_pred             hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHH
Q psy10468        323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAG  353 (365)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (365)
                      +.+.++|.+..++..+...+..........+
T Consensus       955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  985 (1321)
T 4f4c_A          955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGC  985 (1321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988888766665544443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} Back     alignment and structure
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Back     alignment and structure
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Back     alignment and structure
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Back     alignment and structure
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Back     alignment and structure
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d3b60a2319 f.37.1.1 (A:10-328) Multidrug resistance ABC trans 8e-08
d2hyda2323 f.37.1.1 (A:1-323) Putative multidrug export ATP-b 4e-07
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 51.1 bits (120), Expect = 8e-08
 Identities = 15/87 (17%), Positives = 39/87 (44%)

Query: 113 NPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDLMSFLVSTQMI 172
           N +    ++M++ +  S P+  + A   +   LY        ++LTAG +     S   +
Sbjct: 226 NKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIAL 285

Query: 173 QRSMAQMSLLFGSYIKGLSSGARIFQL 199
            R +  ++ +   + +G+++   +F +
Sbjct: 286 MRPLKSLTNVNAQFQRGMAACQTLFAI 312
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d3b60a2319 Multidrug resistance ABC transporter MsbA, N-termi 99.91
d2hyda2323 Putative multidrug export ATP-binding/permease pro 99.91
d3b60a2319 Multidrug resistance ABC transporter MsbA, N-termi 99.03
d2hyda2323 Putative multidrug export ATP-binding/permease pro 98.97
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: ABC transporter transmembrane region
superfamily: ABC transporter transmembrane region
family: ABC transporter transmembrane region
domain: Multidrug resistance ABC transporter MsbA, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=5.4e-23  Score=180.16  Aligned_cols=227  Identities=20%  Similarity=0.244  Sum_probs=197.9

Q ss_pred             hHHHHHHhHHHHHHHHHHHHhhhcccCchhhhhhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10468          3 LLVAFINIQLPLYLGNIINILAKFTQDSTAQLSFMSEMKEPALKLVGLYVAQSVFTCVYISLLSGLGERIAAKLRCQLFE   82 (365)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~   82 (365)
                      ++.++..+..|++++.++|.+..+        .+.+.+...++.+++..++..++.++..++..+.+.++..++|+++++
T Consensus        26 ~~~~~~~~~~~~~~~~~id~~~~~--------~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~   97 (319)
T d3b60a2          26 ILNAASDTFMLSLLKPLLDDGFGK--------TDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG   97 (319)
T ss_dssp             HHHHHHHHHHHHHHTHHHHSSTTS--------TTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccccchhhHHHH
Confidence            456677888999999999987754        244556667777888888999999999999999999999999999999


Q ss_pred             HHhcCccccccccccchhhhhhhhhHHhhhhhhHHHHHHHHHhhcccccHHHHHHHHHHHHHHHhhcccccccccchhhH
Q psy10468         83 SILKQDIAFFDSTRTGELVDSAKPNIKNKLNPIHNHVIRMITGAFRSSPLNSIHAESMVLGTLYFGGHLMASNTLTAGDL  162 (365)
Q Consensus        83 ~i~~~~~~~f~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l  162 (365)
                      |++++|+++|+++                                                                   
T Consensus        98 ~ll~~~~~~~~~~-------------------------------------------------------------------  110 (319)
T d3b60a2          98 HMMGMPVAFFDKQ-------------------------------------------------------------------  110 (319)
T ss_dssp             HHHTCCSTHHHHS-------------------------------------------------------------------
T ss_pred             hhcccchhhcccc-------------------------------------------------------------------
Confidence            9666666665555                                                                   


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchhcccccCccchhhhhhhhHHHHHHHHHHHH
Q psy10468        163 MSFLVSTQMIQRSMAQMSLLFGSYIKGLSSGARIFQLRCQLFESILKQDIAFFDSTRTGELVDRLTTDVQEFKSSFKLVV  242 (365)
Q Consensus       163 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~lr~~l~~kll~~~~~~~~~~~~g~l~~~~~~d~~~i~~~~~~~~  242 (365)
                                                                              ++|++.+++++|++.+++.+....
T Consensus       111 --------------------------------------------------------~~g~~~~~~~~d~~~~~~~~~~~~  134 (319)
T d3b60a2         111 --------------------------------------------------------STGTLLSRITYDSEQVASSSSGAL  134 (319)
T ss_dssp             --------------------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------------------------cccccccccccccccccccccccc
Confidence                                                                    555666667777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhHHHHHhcchHhHhhhcCc
Q psy10468        243 SQGLRNGAQVIGAVSSLLIISPSLTLGMLGIVPIVIISGTFIGSLLRSLSREAQNQAAKAVTIGEEAISNIRTVRAFAME  322 (365)
Q Consensus       243 ~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~  322 (365)
                      ...+..++.+++.++.+++.+|++++++++..|+..++.....++.++..++.++..++.++.+.|.++|++++|.++.|
T Consensus       135 ~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e  214 (319)
T d3b60a2         135 ITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ  214 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCH
T ss_pred             chhhhhhhhhhhHHHHHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhHHhHHHHHHHhHhhHHhHHHHHHHHHHhcc
Q psy10468        323 PYEVRLFTDQVSLSCTLQERLGVGVGMFQAGTNLFLNG  360 (365)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (365)
                      +.+.+++++..++..+...+.............++..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (319)
T d3b60a2         215 EVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASL  252 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhHHHHHHHHHHHhcccchhhhhhh
Confidence            99999999999999999999888888777776665544
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure