Psyllid ID: psy10471

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
MSSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHcccccccccccccccccEEccHHEEcc
Coil and Loop (DISEMBL)
mssdknlgIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIadrgpeyvsAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAetcspftvlpalmneyrvpelnvqNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYvwpnifetsPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Flexible Loop (DISEMBL)
MSSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Low Complexity Region (SEG)
MSSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFellellKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Disordered region (IsUnstruct)
******LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYV*
Disordered Region (DISOPRED)
****KNL*IKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Disordered Region (DISEMBL)
MSSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Disordered Region (DISPRO)
*****NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
O75533	1304	Splicing factor 3B subuni	yes	N/A	0.930	0.226	0.847	1e-152
O57683	1307	Splicing factor 3B subuni	N/A	N/A	0.930	0.226	0.844	1e-151
Q99NB9	1304	Splicing factor 3B subuni	yes	N/A	0.930	0.226	0.844	1e-151
Q10178	1205	U2 snRNP component prp10	yes	N/A	0.927	0.244	0.633	1e-115
P49955	971	U2 snRNP component HSH155	yes	N/A	0.918	0.300	0.564	2e-94

>sp|O75533|SF3B1_HUMAN Splicing factor 3B subunit 1 OS=Homo sapiens GN=SF3B1 PE=1 SV=3

 Score =  536 bits (1380), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 251/296 (84%), Positives = 273/296 (92%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKA
Sbjct: 1009 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA 1068

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1069 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1128

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1129 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1188

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
             A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQ
Sbjct: 1189 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ 1248

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct: 1249 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Homo sapiens (taxid: 9606)

>sp|O57683|SF3B1_XENLA Splicing factor 3B subunit 1 OS=Xenopus laevis GN=sf3b1 PE=2 SV=1

 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/296 (84%), Positives = 272/296 (91%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKA
Sbjct: 1012 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA 1071

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1072 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1131

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1132 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1191

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
             A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R++Q
Sbjct: 1192 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQ 1251

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY L
Sbjct: 1252 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYTL 1307

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Xenopus laevis (taxid: 8355)

>sp|Q99NB9|SF3B1_MOUSE Splicing factor 3B subunit 1 OS=Mus musculus GN=Sf3b1 PE=1 SV=1

 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/296 (84%), Positives = 273/296 (92%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICFELLELLKA
Sbjct: 1009 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKA 1068

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1069 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1128

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct: 1129 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1188

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
             A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQ
Sbjct: 1189 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ 1248

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct: 1249 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.

Mus musculus (taxid: 10090)

>sp|Q10178|SF3B1_SCHPO U2 snRNP component prp10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp10 PE=1 SV=3

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 187/295 (63%), Positives = 237/295 (80%)

Query: 15   IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF 74
            ++++   ++ P +++L+  +   L +  +KVQEN IDLVG+IADRG EYVSAREWMRICF
Sbjct: 902  VSVVGMSSMQPPIRDLLPRLTPILRNRHEKVQENTIDLVGKIADRGSEYVSAREWMRICF 961

Query: 75   ELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA 134
            EL+++LKAHKK+IRRA VNTFGYI+KAIGP DVLATLLNNLKVQERQNRVCTTVAIAIVA
Sbjct: 962  ELIDMLKAHKKSIRRAAVNTFGYISKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA 1021

Query: 135  ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR 194
            ETC PFTV+PALM +YR PE+NVQNGVLK+L+F+FEYIGE  +DY+YA+TPLL DALMDR
Sbjct: 1022 ETCMPFTVVPALMADYRTPEMNVQNGVLKSLAFMFEYIGEQARDYVYAITPLLADALMDR 1081

Query: 195  DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA 254
            D VHRQTA + IKH++LG  G G EDA+ HLLN +WPNI E SPH++ A  + ++G+R  
Sbjct: 1082 DAVHRQTAASVIKHLSLGCVGLGVEDAMIHLLNILWPNILEESPHVINAVREGIDGIRNC 1141

Query: 255  LGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVY 309
            +G   I+ Y++QGLFHP+RKVR+ YW  YNS Y+   DA++  YP + +D  N Y
Sbjct: 1142 IGVGPIMAYLVQGLFHPSRKVRNTYWTSYNSAYVQSADAMVPYYPHVDDDQFNNY 1196

Contacts pre-mRNA on both sides of the branch site early in spliceosome assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P49955|SF3B1_YEAST U2 snRNP component HSH155 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSH155 PE=1 SV=1

 Score =  345 bits (885), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 166/294 (56%), Positives = 205/294 (69%), Gaps = 2/294 (0%)

Query: 25  PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 84
           P +  ++  +   L ++ +KV+ N I  VG I    P Y   +EWMRICFELLELLK+  
Sbjct: 680 PPINQILPTLTPILRNKHRKVEVNTIKFVGLIGKLAPTYAPPKEWMRICFELLELLKSTN 739

Query: 85  KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
           K IRR+   TFG+IA+AIGPHDVL  LLNNLKVQERQ RVCT VAI IVA+ C P+ VLP
Sbjct: 740 KEIRRSANATFGFIAEAIGPHDVLVALLNNLKVQERQLRVCTAVAIGIVAKVCGPYNVLP 799

Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
            +MNEY  PE NVQNGVLKA+SF+FEYIG M KDYIY +TPLLEDAL DRDLVHRQTA  
Sbjct: 800 VIMNEYTTPETNVQNGVLKAMSFMFEYIGNMSKDYIYFITPLLEDALTDRDLVHRQTASN 859

Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
            I H+AL   G G EDA  HL+N + PNIFETSPH +   ++ +E L  ALGP   + Y+
Sbjct: 860 VITHLALNCSGTGHEDAFIHLMNLLIPNIFETSPHAIMRILEGLEALSQALGPGLFMNYI 919

Query: 265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             GLFHPA+ VR  +W++YN++Y+  QDA++  YP +  D    Y+  ELD VL
Sbjct: 920 WAGLFHPAKNVRKAFWRVYNNMYVMYQDAMVPFYP-VTPDNNEEYIE-ELDLVL 971

Contacts pre-mRNA on both sides of the branch site early in spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
322788435	1303	hypothetical protein SINV_80122 [Solenop	0.930	0.227	0.885	1e-157
332021647	1317	Splicing factor 3B subunit 1 [Acromyrmex	0.930	0.224	0.885	1e-157
340712061	1316	PREDICTED: splicing factor 3B subunit 1-	0.930	0.224	0.885	1e-157
189240885	1322	PREDICTED: similar to U2 small nuclear r	0.896	0.215	0.881	1e-157
66505925	1315	PREDICTED: splicing factor 3B subunit 1-	0.930	0.225	0.885	1e-157
383857066	1316	PREDICTED: splicing factor 3B subunit 1-	0.937	0.226	0.879	1e-157
307192374	1304	Splicing factor 3B subunit 1 [Harpegnath	0.937	0.228	0.879	1e-157
307182141	1267	Splicing factor 3B subunit 1 [Camponotus	0.930	0.233	0.885	1e-157
156542977	1316	PREDICTED: splicing factor 3B subunit 1-	0.937	0.226	0.872	1e-156
345489666	1314	PREDICTED: splicing factor 3B subunit 1-	0.937	0.226	0.869	1e-156

>gi|322788435|gb|EFZ14106.1| hypothetical protein SINV_80122 [Solenopsis invicta]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/296 (88%), Positives = 279/296 (94%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA
Sbjct: 1008 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1067

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1068 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1127

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQTA
Sbjct: 1128 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQTA 1187

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
            CA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQ
Sbjct: 1188 CAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQ 1247

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1248 YTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1303

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021647|gb|EGI62006.1| Splicing factor 3B subunit 1 [Acromyrmex echinatior]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/296 (88%), Positives = 279/296 (94%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA
Sbjct: 1022 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1081

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1082 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1141

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQTA
Sbjct: 1142 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQTA 1201

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
            CA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQ
Sbjct: 1202 CAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQ 1261

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1262 YTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1317

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712061|ref|XP_003394583.1| PREDICTED: splicing factor 3B subunit 1-like [Bombus terrestris] gi|350398721|ref|XP_003485287.1| PREDICTED: splicing factor 3B subunit 1-like [Bombus impatiens]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/296 (88%), Positives = 279/296 (94%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA
Sbjct: 1021 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1080

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1081 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1140

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQTA
Sbjct: 1141 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQTA 1200

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
            CA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQ
Sbjct: 1201 CAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQ 1260

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1261 YTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1316

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240885|ref|XP_971484.2| PREDICTED: similar to U2 small nuclear ribonucleoprotein [Tribolium castaneum]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 261/296 (88%), Positives = 278/296 (93%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA
Sbjct: 1027 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1086

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1087 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1146

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV PLLEDALMDRDLVHRQTA
Sbjct: 1147 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVAPLLEDALMDRDLVHRQTA 1206

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
            CA IKHMALGVYGFGCEDAL HLLNYVWPNIFETSPHLVQAFMDA+EG+RVALGP++ILQ
Sbjct: 1207 CAAIKHMALGVYGFGCEDALIHLLNYVWPNIFETSPHLVQAFMDAIEGMRVALGPIKILQ 1266

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RY++DYVL
Sbjct: 1267 YTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIANDPKNQYIRYDMDYVL 1322

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66505925|ref|XP_623732.1| PREDICTED: splicing factor 3B subunit 1-like isoform 1 [Apis mellifera] gi|380030470|ref|XP_003698871.1| PREDICTED: splicing factor 3B subunit 1-like [Apis florea]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/296 (88%), Positives = 279/296 (94%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA
Sbjct: 1020 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1079

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1080 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1139

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQTA
Sbjct: 1140 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQTA 1199

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
            CA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQ
Sbjct: 1200 CAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQ 1259

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1260 YTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1315

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857066|ref|XP_003704027.1| PREDICTED: splicing factor 3B subunit 1-like [Megachile rotundata]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/298 (87%), Positives = 279/298 (93%)

Query: 21   CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80
              + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL
Sbjct: 1019 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 1078

Query: 81   KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 140
            KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 1079 KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 1138

Query: 141  TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 200
            TVLPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQ
Sbjct: 1139 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQ 1198

Query: 201  TACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260
            TACA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++I
Sbjct: 1199 TACAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKI 1258

Query: 261  LQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            LQY LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1259 LQYTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1316

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192374|gb|EFN75618.1| Splicing factor 3B subunit 1 [Harpegnathos saltator]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/298 (87%), Positives = 279/298 (93%)

Query: 21   CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80
              + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL
Sbjct: 1007 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 1066

Query: 81   KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 140
            KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 1067 KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 1126

Query: 141  TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 200
            TVLPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQ
Sbjct: 1127 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQ 1186

Query: 201  TACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260
            TACA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++I
Sbjct: 1187 TACAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKI 1246

Query: 261  LQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            LQY LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1247 LQYTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1304

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182141|gb|EFN69484.1| Splicing factor 3B subunit 1 [Camponotus floridanus]

 Score =  558 bits (1439), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/296 (88%), Positives = 279/296 (94%)

Query: 23   ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
            + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA
Sbjct: 972  MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 1031

Query: 83   HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
            HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct: 1032 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1091

Query: 143  LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
            LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQTA
Sbjct: 1092 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQTA 1151

Query: 203  CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
            CA IKHMALGVYGFGCEDAL HLLN+VWPN+FETSPHLVQAFMDAV+GLRVALGP++ILQ
Sbjct: 1152 CAAIKHMALGVYGFGCEDALIHLLNHVWPNVFETSPHLVQAFMDAVDGLRVALGPIKILQ 1211

Query: 263  YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            Y LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1212 YTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1267

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542977|ref|XP_001602756.1| PREDICTED: splicing factor 3B subunit 1-like [Nasonia vitripennis]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/298 (87%), Positives = 279/298 (93%)

Query: 21   CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80
              + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL
Sbjct: 1019 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 1078

Query: 81   KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 140
            KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 1079 KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 1138

Query: 141  TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 200
            TVLPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQ
Sbjct: 1139 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQ 1198

Query: 201  TACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260
            TACA IKHM+LGV+GFGCEDAL HLLNYVWPN+FETSPHLVQAFMDAV+GLRV+LGP++I
Sbjct: 1199 TACAAIKHMSLGVHGFGCEDALVHLLNYVWPNVFETSPHLVQAFMDAVDGLRVSLGPIKI 1258

Query: 261  LQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            LQY LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDYVL
Sbjct: 1259 LQYTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYVL 1316

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489666|ref|XP_001599854.2| PREDICTED: splicing factor 3B subunit 1-like [Nasonia vitripennis]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 259/298 (86%), Positives = 279/298 (93%)

Query: 21   CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 80
              + P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL
Sbjct: 1017 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL 1076

Query: 81   KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 140
            KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF
Sbjct: 1077 KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF 1136

Query: 141  TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQ 200
            TVLPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV+PLLEDALMDRDLVHRQ
Sbjct: 1137 TVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVSPLLEDALMDRDLVHRQ 1196

Query: 201  TACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI 260
            TACA IKHM+LGV+GFGCEDAL HLLNYVWPN+FETSPHLVQAFMDAV+GLRV+LGP++I
Sbjct: 1197 TACAAIKHMSLGVHGFGCEDALIHLLNYVWPNVFETSPHLVQAFMDAVDGLRVSLGPIKI 1256

Query: 261  LQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
            LQY LQGLFHPARKVRDVYWKIYNSLYIGGQDAL++ YPRI ND KN Y+RYELDY+L
Sbjct: 1257 LQYTLQGLFHPARKVRDVYWKIYNSLYIGGQDALVAGYPRIMNDPKNQYIRYELDYIL 1314

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
FB|FBgn0031266	1340	CG2807 [Drosophila melanogaste	0.924	0.219	0.860	4.1e-136
UNIPROTKB|E1C2C3	1301	SF3B1 "Uncharacterized protein	0.924	0.225	0.833	1.3e-132
UNIPROTKB|F1MX61	1304	SF3B1 "Uncharacterized protein	0.924	0.225	0.833	1.6e-132
UNIPROTKB|O75533	1304	SF3B1 "Splicing factor 3B subu	0.924	0.225	0.833	1.6e-132
UNIPROTKB|G3V7T6	1304	Sf3b1 "Splicing factor 3b, sub	0.924	0.225	0.833	1.6e-132
MGI|MGI:1932339	1304	Sf3b1 "splicing factor 3b, sub	0.924	0.225	0.829	3.4e-132
UNIPROTKB|F1SMZ9	1303	SF3B1 "Uncharacterized protein	0.924	0.225	0.827	2.4e-131
ZFIN|ZDB-GENE-040827-3	1315	sf3b1 "splicing factor 3b, sub	0.924	0.223	0.826	1.7e-130
TAIR|locus:2173333	1269	AT5G64270 [Arabidopsis thalian	0.911	0.228	0.786	2.1e-126
DICTYBASE|DDB_G0275957	1051	sf3b1 "splicing factor 3B subu	0.924	0.279	0.741	5.4e-118

FB|FBgn0031266 CG2807 [Drosophila melanogaster (taxid:7227)]

 Score = 1333 (474.3 bits), Expect = 4.1e-136, P = 4.1e-136
 Identities = 253/294 (86%), Positives = 269/294 (91%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRGPEYVSAREWMRICF      KAHK
Sbjct:  1047 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK 1106

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAE+C PFTVLP
Sbjct:  1107 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAESCRPFTVLP 1166

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAV PLLEDALMDRDLVHRQTAC+
Sbjct:  1167 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVCPLLEDALMDRDLVHRQTACS 1226

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              IKHM+LGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD+V+GLRV+LGP++ILQY 
Sbjct:  1227 AIKHMSLGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDSVDGLRVSLGPIKILQYT 1286

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNSLYIGGQDALI+ YPRI ND KN Y RYELDY L
Sbjct:  1287 LQGLFHPARKVRDVYWKIYNSLYIGGQDALIAGYPRITNDPKNQYERYELDYTL 1340

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005686 "U2 snRNP" evidence=ISS;IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

UNIPROTKB|E1C2C3 SF3B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
 Identities = 245/294 (83%), Positives = 266/294 (90%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICF      KAHK
Sbjct:  1008 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1067

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1068 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1127

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct:  1128 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1187

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY 
Sbjct:  1188 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1247

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1248 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL 1301

GO:0003682 "chromatin binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|F1MX61 SF3B1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 245/294 (83%), Positives = 266/294 (90%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICF      KAHK
Sbjct:  1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct:  1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY 
Sbjct:  1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|O75533 SF3B1 "Splicing factor 3B subunit 1" [Homo sapiens (taxid:9606)]

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 245/294 (83%), Positives = 266/294 (90%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICF      KAHK
Sbjct:  1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct:  1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY 
Sbjct:  1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

GO:0003682 "chromatin binding" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=NAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;NAS;TAS

GO:0000375 "RNA splicing, via transesterification reactions" evidence=NAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|G3V7T6 Sf3b1 "Splicing factor 3b, subunit 1, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 245/294 (83%), Positives = 266/294 (90%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICF      KAHK
Sbjct:  1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct:  1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY 
Sbjct:  1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1304

GO:0003682 "chromatin binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

MGI|MGI:1932339 Sf3b1 "splicing factor 3b, subunit 1" [Mus musculus (taxid:10090)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 244/294 (82%), Positives = 266/294 (90%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICF      KAHK
Sbjct:  1011 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1070

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1071 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1130

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct:  1131 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1190

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY 
Sbjct:  1191 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1250

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RY+LDY+L
Sbjct:  1251 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYDLDYIL 1304

GO:0000375 "RNA splicing, via transesterification reactions" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003682 "chromatin binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IGI

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|F1SMZ9 SF3B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1288 (458.5 bits), Expect = 2.4e-131, P = 2.4e-131
 Identities = 245/296 (82%), Positives = 266/296 (89%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR--GPEYVSAREWMRICFXXXXXXKA 82
             P +K+L+  +   L +  +KVQENCIDLVGRIADR  G EYVSAREWMRICF      KA
Sbjct:  1008 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRIRGAEYVSAREWMRICFELLELLKA 1067

Query:    83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
             HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV
Sbjct:  1068 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 1127

Query:   143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
             LPALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA
Sbjct:  1128 LPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 1187

Query:   203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
              A ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQ
Sbjct:  1188 SAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQ 1247

Query:   263 YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             Y LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YPRI ND KN Y+RYELDY+L
Sbjct:  1248 YCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL 1303

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

ZFIN|ZDB-GENE-040827-3 sf3b1 "splicing factor 3b, subunit 1" [Danio rerio (taxid:7955)]

 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 243/294 (82%), Positives = 264/294 (89%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG EYVSAREWMRICF      KAHK
Sbjct:  1022 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHK 1081

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1082 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1141

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA A
Sbjct:  1142 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASA 1201

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              ++HM+LGVYGFGCED+L HLLNYVWPN+FETSPH++QA M A+EGLRVA+GP R+LQY 
Sbjct:  1202 VVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYC 1261

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHPARKVRDVYWKIYNS+YIG QDALI+ YP I ND KN Y+RYEL+Y L
Sbjct:  1262 LQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPLIFNDEKNSYVRYELEYFL 1315

GO:0030318 "melanocyte differentiation" evidence=IGI;IMP

GO:0014032 "neural crest cell development" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IGI

TAIR|locus:2173333 AT5G64270 [Arabidopsis thaliana (taxid:3702)]

 Score = 1201 (427.8 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
 Identities = 228/290 (78%), Positives = 252/290 (86%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG E+V AREWMRICF      KAHK
Sbjct:   976 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEMLKAHK 1035

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             K IRRATVNTFGYIAKAIGP DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP
Sbjct:  1036 KGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 1095

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
             ALMNEYRVPELNVQNGVLK+LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA +
Sbjct:  1096 ALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAAS 1155

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              +KHMALGV G GCEDAL HLLN++WPNIFETSPH++ A M+A+EG+RVALG   IL Y 
Sbjct:  1156 AVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRVALGAAVILNYC 1215

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYEL 314
             LQGLFHPARKVR+VYWKIYNSLYIG QD L++AYP ++++  NVY R EL
Sbjct:  1216 LQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPEL 1265

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

DICTYBASE|DDB_G0275957 sf3b1 "splicing factor 3B subunit 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
 Identities = 218/294 (74%), Positives = 250/294 (85%)

Query:    25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFXXXXXXKAHK 84
             P +K+L+  +   L +  +KVQENCIDLVGRIADRG ++VS RE MRICF      KAHK
Sbjct:   758 PPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGSDFVSDREGMRICFELLDMLKAHK 817

Query:    85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
             K IRRA VNTFGYIAKAIGP +VLATLLNNLKVQ+RQNRVCTTVAIAIVAETC+P+TVLP
Sbjct:   818 KGIRRAAVNTFGYIAKAIGPQEVLATLLNNLKVQDRQNRVCTTVAIAIVAETCAPYTVLP 877

Query:   145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
              L+NEYR+PELNVQNGVLK+LSFLFEYIGEMGKDYIYAVT LLEDALMDRD VHRQTAC+
Sbjct:   878 GLINEYRIPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTTLLEDALMDRDAVHRQTACS 937

Query:   205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV 264
              IKH++LGV G GCED+LTHLLNYVWPN+FETSPH++ AF++AVEGLR ALGP  ILQY 
Sbjct:   938 AIKHISLGVMGLGCEDSLTHLLNYVWPNVFETSPHVINAFLEAVEGLRFALGPNTILQYT 997

Query:   265 LQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
             LQGLFHP+RKVR++YWK+YN LYI  QDAL   YPR  ++  N Y RYELD+V+
Sbjct:   998 LQGLFHPSRKVRNIYWKLYNMLYISSQDALTPCYPRTLDENDNKYQRYELDFVI 1051

GO:0005686 "U2 snRNP" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0000245 "spliceosomal complex assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75533	SF3B1_HUMAN	No assigned EC number	0.8479	0.9308	0.2269	yes	N/A
Q10178	SF3B1_SCHPO	No assigned EC number	0.6338	0.9276	0.2448	yes	N/A
Q99NB9	SF3B1_MOUSE	No assigned EC number	0.8445	0.9308	0.2269	yes	N/A
P49955	SF3B1_YEAST	No assigned EC number	0.5646	0.9182	0.3007	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	318
COG5181	975	COG5181, HSH155, U2 snRNP spliceosome subunit [RNA	1e-137
COG5181	975	COG5181, HSH155, U2 snRNP spliceosome subunit [RNA	2e-09

>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification]

 Score =  411 bits (1058), Expect = e-137
 Identities = 157/296 (53%), Positives = 197/296 (66%), Gaps = 13/296 (4%)

Query: 23  ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA 82
           + P L+N           + QKV  N I LVG I    PEY+  REWMRICFEL++ LK+
Sbjct: 693 LTPILRN-----------KHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS 741

Query: 83  HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV 142
             K IRR    TFG I++AIGP DVL  LLNNLKVQERQ RVCT+VAI+IVAE C PF+V
Sbjct: 742 WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSV 801

Query: 143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTA 202
           LP LM++Y  PE NVQNGVLKA+ F+FEYIG+   DY+Y++TPLLEDAL DRD VHRQTA
Sbjct: 802 LPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTA 861

Query: 203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQ 262
              I+H+ L   G G EDA  HLLN +WPNI E SPH++Q+F + +E     LG   +++
Sbjct: 862 MNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMK 921

Query: 263 YVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL 318
           YV QGLFHP+  VR  YW +YN +Y+   DA++  YP  ++   N  L   L   +
Sbjct: 922 YVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEEDL--NPELARTLHICI 975

Length = 975

>gnl|CDD|227508 COG5181, HSH155, U2 snRNP spliceosome subunit [RNA processing and modification]

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 8   GIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQ 46
           GI+I QQI  L+G + L HL  L++ I   L D  + V+
Sbjct: 337 GIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVR 375

Length = 975

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
KOG0213|consensus	1172		100.0
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	100.0
KOG0213|consensus	1172		99.95
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.89
KOG2171|consensus	1075		99.86
KOG2023|consensus	885		99.83
KOG2171|consensus	1075		99.77
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	99.58
PRK09687	280	putative lyase; Provisional	99.51
KOG0211|consensus	759		99.46
PRK09687	280	putative lyase; Provisional	99.4
KOG2023|consensus	885		99.38
KOG0891|consensus	2341		99.35
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.3
KOG1241|consensus	859		99.27
KOG1241|consensus	859		99.26
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.12
KOG1242|consensus	569		99.12
KOG0166|consensus	514		99.1
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.08
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.02
KOG0166|consensus	514		98.94
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.93
KOG0915|consensus	1702		98.92
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.89
KOG1240|consensus	1431		98.85
KOG0915|consensus	1702		98.85
KOG1242|consensus	569		98.85
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.82
KOG1824|consensus	1233		98.81
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.79
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.76
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.7
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.66
KOG1824|consensus	1233		98.65
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.61
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	98.61
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	98.51
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.5
KOG1240|consensus	1431		98.48
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.48
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.39
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.35
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	98.34
KOG0211|consensus	759		98.34
KOG0212|consensus	675		98.34
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.31
PTZ00429	746	beta-adaptin; Provisional	98.27
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.25
PTZ00429	746	beta-adaptin; Provisional	98.2
KOG2259|consensus	823		98.14
TIGR02270	410	conserved hypothetical protein. Members are found	98.05
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.04
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.0
TIGR02270	410	conserved hypothetical protein. Members are found	97.99
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.96
KOG1820|consensus	815		97.92
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.89
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.88
KOG4224|consensus	550		97.86
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.85
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.84
KOG4653|consensus	982		97.84
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.76
KOG2259|consensus	823		97.75
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.75
KOG2956|consensus	516		97.72
KOG2956|consensus	516		97.72
KOG0212|consensus	675		97.72
KOG4653|consensus	982		97.69
KOG2062|consensus	929		97.65
KOG1059|consensus	877		97.64
PF05004	309	IFRD: Interferon-related developmental regulator (	97.59
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	97.53
KOG1248|consensus	1176		97.47
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.42
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.38
PF05004	309	IFRD: Interferon-related developmental regulator (	97.38
KOG2933|consensus	334		97.29
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	97.28
KOG1061|consensus	734		97.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.13
KOG4413|consensus	524		97.11
KOG4224|consensus	550		97.1
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.08
KOG1992|consensus	960		97.07
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	96.95
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	96.95
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.88
KOG1967|consensus	1030		96.87
KOG1991|consensus	1010		96.81
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.79
KOG2032|consensus	533		96.78
KOG2137|consensus	700		96.78
KOG1077|consensus	938		96.76
KOG1820|consensus	815		96.75
KOG1243|consensus	690		96.73
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	96.68
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.67
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.67
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.65
KOG1062|consensus	866		96.62
KOG0567|consensus	289		96.61
KOG2032|consensus	533		96.6
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.6
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.59
KOG2022|consensus	982		96.55
KOG2025|consensus	892		96.49
KOG1943|consensus	1133		96.48
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.47
KOG1993|consensus	978		96.46
KOG1943|consensus	1133		96.45
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	96.44
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.4
KOG1060|consensus	968		96.34
KOG1078|consensus	865		96.34
KOG1060|consensus	968		96.33
KOG1248|consensus	1176		96.28
KOG0168|consensus	1051		96.26
KOG1059|consensus	877		96.22
KOG1993|consensus	978		96.19
KOG1243|consensus	690		96.09
KOG1062|consensus	866		96.08
KOG1949|consensus	1005		96.03
KOG0414|consensus	1251		96.03
KOG1078|consensus	865		95.97
KOG1967|consensus	1030		95.9
KOG1991|consensus	1010		95.85
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	95.81
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	95.8
KOG0891|consensus	2341		95.77
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	95.73
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	95.68
KOG1058|consensus	948		95.66
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.61
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	95.42
KOG0392|consensus	1549		95.36
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	95.29
COG5116	926	RPN2 26S proteasome regulatory complex component [	95.24
KOG1020|consensus	1692		95.16
KOG1061|consensus	734		95.14
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.13
KOG2160|consensus	342		94.94
PF05804	708	KAP: Kinesin-associated protein (KAP)	94.83
KOG0567|consensus	289		94.58
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.56
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	94.43
KOG0414|consensus	1251		94.25
KOG2025|consensus	892		94.22
KOG2062|consensus	929		94.13
KOG2137|consensus	700		93.83
KOG1020|consensus	1692		93.64
KOG4413|consensus	524		93.58
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	93.48
KOG1077|consensus	938		93.39
KOG1293|consensus	678		93.35
KOG4524|consensus	1014		93.13
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	93.07
KOG0413|consensus	1529		92.62
KOG1822|consensus	2067		92.52
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.52
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	92.47
KOG2274|consensus	1005		92.46
KOG1525|consensus	1266		92.16
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.1
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	92.01
KOG0392|consensus	1549		91.94
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	91.63
KOG2274|consensus	1005		91.43
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	91.0
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	90.71
KOG1949|consensus	1005		90.64
KOG2933|consensus	334		90.59
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.57
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	90.47
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	90.13
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	90.07
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.06
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	89.65
KOG4535|consensus	728		89.45
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	89.44
KOG0413|consensus	1529		89.4
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	89.38
PF05804	708	KAP: Kinesin-associated protein (KAP)	89.21
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	89.02
KOG4535|consensus	728		88.5
KOG2021|consensus	980		88.22
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	87.93
KOG3961|consensus	262		87.65
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	87.48
KOG1822|consensus	2067		87.22
COG5656	970	SXM1 Importin, protein involved in nuclear import	86.99
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	86.88
COG5098	1128	Chromosome condensation complex Condensin, subunit	86.79
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	86.17
KOG0946|consensus	970		86.14
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	85.68
KOG2149|consensus	393		85.52
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	84.87
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	84.76
KOG2549|consensus	576		84.72
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	84.67
KOG0168|consensus	1051		84.65
KOG1517|consensus	1387		84.55
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	83.33
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	83.3
COG5098	1128	Chromosome condensation complex Condensin, subunit	83.3
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	83.06
PF03130	27	HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IP	83.01
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	82.17
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	81.88
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	80.56
PF10193	114	Telomere_reg-2: Telomere length regulation protein	80.48
KOG2149|consensus	393		80.23

>KOG0213|consensus

Probab=100.00  E-value=7.2e-71  Score=532.97  Aligned_cols=312  Identities=75%  Similarity=1.191  Sum_probs=306.4

Q ss_pred             hHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH
Q psy10471          7 LGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK   85 (318)
Q Consensus         7 ~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~   85 (318)
                      ..+++|..+..+.|- .|.|++++|+|.++|+|++.|.+|+.+++..+|.||.++++|++.+|||+||++|+++|++.++
T Consensus       860 sILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK  939 (1172)
T KOG0213|consen  860 SILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKK  939 (1172)
T ss_pred             HHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHH
Confidence            457788888888886 6999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHH
Q psy10471         86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL  165 (318)
Q Consensus        86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al  165 (318)
                      .+||+|+.|||+|++.+||++++.+||++||+|+||.|+|++.||+++++.|+||+|+|+||++|+.||.+||++|++++
T Consensus       940 ~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkal 1019 (1172)
T KOG0213|consen  940 EIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKAL 1019 (1172)
T ss_pred             HHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHH
Q psy10471        166 SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFM  245 (318)
Q Consensus       166 ~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii  245 (318)
                      +++|+++|...++|++.++|.+.+++.|+|+.+||+++++|.+++.++.+.|+++.++|++|++||+|+|++|++.+++.
T Consensus      1020 sf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~ 1099 (1172)
T KOG0213|consen 1020 SFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFD 1099 (1172)
T ss_pred             HHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHHhhccccccccccCCCCCcccccccccccccccC
Q psy10471        246 DAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL  318 (318)
Q Consensus       246 ~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~  318 (318)
                      +++|.++.++|+..+++|+++|+|||+++||+.||++||++|++++|+++|+||.++|+.+|.|.|.||+|++
T Consensus      1100 e~~eg~r~~Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dalv~~ypv~ed~p~n~y~~~eld~~l 1172 (1172)
T KOG0213|consen 1100 EAMEGLRVALGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDALVACYPVEEDDPENAYYRYELDYVL 1172 (1172)
T ss_pred             HHHHHHHHHhchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchhhhccccCCCCcchhhhhhhhcccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999975

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=7.9e-65  Score=483.83  Aligned_cols=310  Identities=51%  Similarity=0.871  Sum_probs=299.1

Q ss_pred             hHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH
Q psy10471          7 LGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK   85 (318)
Q Consensus         7 ~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~   85 (318)
                      ..+++|..+-.+.|- .|.|++++|+|.++|+|++.|.+|..+++..+|.||.++++|+.++|||+||++|+++|++.++
T Consensus       665 sil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nK  744 (975)
T COG5181         665 SILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNK  744 (975)
T ss_pred             HHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhH
Confidence            457788888888885 6999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHH
Q psy10471         86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL  165 (318)
Q Consensus        86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al  165 (318)
                      ++||.|..|||+|++.+||++++..|+++||+|+||.|+|++.||+++++.|+||.|+|++|+.|++||.++|+++++++
T Consensus       745 eiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam  824 (975)
T COG5181         745 EIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAM  824 (975)
T ss_pred             HHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHH
Q psy10471        166 SFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFM  245 (318)
Q Consensus       166 ~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii  245 (318)
                      +++|+++|....+|++.+.|.+.++++|+|+.+||+++++|.+++.++.+.|.++.++|++|.+||+|+|++|++.+++.
T Consensus       825 ~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~  904 (975)
T COG5181         825 CFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFD  904 (975)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHHhhccccccccccCCCCCcccccccccccccccC
Q psy10471        246 DAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRIQNDMKNVYLRYELDYVL  318 (318)
Q Consensus       246 ~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~  318 (318)
                      +++++++.++|++.|+.|+++|+|||+++||..||++||.+|...+|+++||||..+|.  |.+...||++.|
T Consensus       905 Eg~e~~~~~lg~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~~~damvp~ypv~~d~--n~e~~~~l~i~i  975 (975)
T COG5181         905 EGMESFATVLGSGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVFDSDAMVPCYPVEEDL--NPELARTLHICI  975 (975)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhccCchHHHHHHHHHHHhhhhhcccccccccccCCCCc--CHHHHhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999765  556667887653

>KOG0213|consensus

Probab=99.95  E-value=7.5e-26  Score=220.76  Aligned_cols=265  Identities=25%  Similarity=0.340  Sum_probs=221.9

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-----   77 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-----   77 (318)
                      ..|||++++++++|+++||+++||+..++.++...+.|++..||..++.+++.+|+.+++|. +..+..++..|+     
T Consensus       527 qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~  605 (1172)
T KOG0213|consen  527 QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ  605 (1172)
T ss_pred             hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999998877 677777766665     


Q ss_pred             -----------------------------------------------------------------------HHhhh--ch
Q psy10471         78 -----------------------------------------------------------------------ELLKA--HK   84 (318)
Q Consensus        78 -----------------------------------------------------------------------~~L~d--~~   84 (318)
                                                                                             +++..  .+
T Consensus       606 hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~  685 (1172)
T KOG0213|consen  606 HRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFS  685 (1172)
T ss_pred             ccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhh
Confidence                                                                                   11122  23


Q ss_pred             HHHHHHHH---------HHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--------ccchHHHH
Q psy10471         85 KAIRRATV---------NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALM  147 (318)
Q Consensus        85 ~~vR~~av---------~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--------~~vip~L~  147 (318)
                      +|.|+.|.         .+...||+++|....+...+..||++..+.|.|++.++..|.-..+-        ...+..++
T Consensus       686 fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil  765 (1172)
T KOG0213|consen  686 FWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGIL  765 (1172)
T ss_pred             hhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHH
Confidence            44454443         45556777777777888899999999899999999998755433321        24566666


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471        148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN  227 (318)
Q Consensus       148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~  227 (318)
                      ..++.++.+. ..++..+..+.+++|.++++|+++|+..+++.+++.++.+|++++++++.++.+++.|+.+..+.|+..
T Consensus       766 ~Afqeqtt~d-~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv  844 (1172)
T KOG0213|consen  766 YAFQEQTTED-SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV  844 (1172)
T ss_pred             HHHHhcccch-hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence            6665544332 368899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCChHHHHHHHHHHHHHHHHcChhh-------HHHhHHHHhc
Q psy10471        228 YVWPNIFETSPHLVQAFMDAVEGLRVALGPVR-------ILQYVLQGLF  269 (318)
Q Consensus       228 ~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~-------~~~~vl~~l~  269 (318)
                      .+++.+.+++|++..+|+.+|++|..++|...       +.|.+.|.+-
T Consensus       845 vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk  893 (1172)
T KOG0213|consen  845 VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK  893 (1172)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence            99999999999999999999999999999755       5666666663

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.89  E-value=2e-22  Score=193.98  Aligned_cols=273  Identities=18%  Similarity=0.176  Sum_probs=215.9

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-----   77 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-----   77 (318)
                      ..|||+++++++++...|+...||+.+++.++...++|++..||..++++++.+|+..++|. +..+..++..|+     
T Consensus       332 ~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~  410 (975)
T COG5181         332 EARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ  410 (975)
T ss_pred             hhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh
Confidence            47999999999999999999999999999999999999999999999999999999888665 445544444443     


Q ss_pred             -----------------------------------------------------------------------HHhhh--ch
Q psy10471         78 -----------------------------------------------------------------------ELLKA--HK   84 (318)
Q Consensus        78 -----------------------------------------------------------------------~~L~d--~~   84 (318)
                                                                                             +....  +.
T Consensus       411 hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~  490 (975)
T COG5181         411 HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSP  490 (975)
T ss_pred             cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhch
Confidence                                                                                   11111  34


Q ss_pred             HHHHHHHH---------HHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--------ccchHHHH
Q psy10471         85 KAIRRATV---------NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--------FTVLPALM  147 (318)
Q Consensus        85 ~~vR~~av---------~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--------~~vip~L~  147 (318)
                      +|.||.|.         .|...+|+..|...+...++++++|+....|.|++.+..-++...+-        .-.+.+++
T Consensus       491 fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il  570 (975)
T COG5181         491 FWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSIL  570 (975)
T ss_pred             HHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            45565555         56666777666666888899999998888899988877654432221        13444555


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471        148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN  227 (318)
Q Consensus       148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~  227 (318)
                      +.++.++.+ ...++.+++.+..+++..+++|++.|+..+++.+++..+.+|+.++++++.++..++.||....+-++.+
T Consensus       571 ~Afqeq~~t-~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~  649 (975)
T COG5181         571 NAFQEQDTT-VGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN  649 (975)
T ss_pred             HHHHhcccc-ccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH
Confidence            555443322 2447788888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccCCChHHHHHHHHHHHHHHHHcChhh-------HHHhHHHHhccccccchH
Q psy10471        228 YVWPNIFETSPHLVQAFMDAVEGLRVALGPVR-------ILQYVLQGLFHPARKVRD  277 (318)
Q Consensus       228 ~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~-------~~~~vl~~l~~~a~~~r~  277 (318)
                      .+++++.+++|++...|+.+|++|..+.|-+.       +.|.+.|.+-.-++|+..
T Consensus       650 iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~  706 (975)
T COG5181         650 ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVA  706 (975)
T ss_pred             HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhh
Confidence            99999999999999999999999999999765       445555555333333333

>KOG2171|consensus

Probab=99.86  E-value=2.8e-20  Score=190.24  Aligned_cols=294  Identities=18%  Similarity=0.202  Sum_probs=224.8

Q ss_pred             hhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          5 KNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         5 r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      .+.|.++|+.+|..+| ..+.|++   ++.+-..++.++++.|+|++.+||.+++++++++ ...+.+|+...++.|+|+
T Consensus       326 ~~~A~~~lDrlA~~L~g~~v~p~~---~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  326 YRAAEQALDRLALHLGGKQVLPPL---FEALEAMLQSTEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLNDP  401 (1075)
T ss_pred             HHHHHHHHHHHHhcCChhhehHHH---HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCCC
Confidence            5689999999999776 4677655   4555556699999999999999999999999988 678888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCcccchH---HHHH----
Q psy10471         84 KKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSPFTVLP---ALMN----  148 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p~~vip---~L~~----  148 (318)
                      ++.||.+|+.++||++..+.|.       .+++.|+..+.+.+. ++..-.+-|+-..++.|.+..+-|   .+|+    
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~  481 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL  481 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999995       345556666554433 333333444444567776543333   3333    


Q ss_pred             HhcC-CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhcCCCchh---HHH
Q psy10471        149 EYRV-PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGCED---ALT  223 (318)
Q Consensus       149 ~~~d-~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~-~~~R~~a~~~i~~la~~~~~~~~~~---~i~  223 (318)
                      .+.. ..+.++..++.+|.++..+-+..|.+|.+.++|.+.+++.+.+ ...|...++++++++.+....|++.   ...
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~  561 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE  561 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence            3333 4678999999999999999999999999999999999998777 7888888888888888877777642   222


Q ss_pred             HHHHhhh---hcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhcccc--------------------------
Q psy10471        224 HLLNYVW---PNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLFHPA--------------------------  272 (318)
Q Consensus       224 hll~~l~---~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~~~a--------------------------  272 (318)
                      .+.+.++   .++.+.+...+...+..+.++|+.+|++|  |+|.++|.++.-+                          
T Consensus       562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~  641 (1075)
T KOG2171|consen  562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV  641 (1075)
T ss_pred             HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence            2333333   34667788899999999999999999998  9999999996311                          


Q ss_pred             -----------ccchHHHHHHHHHhhccccccccccCCCCC
Q psy10471        273 -----------RKVRDVYWKIYNSLYIGGQDALISAYPRIQ  302 (318)
Q Consensus       273 -----------~~~r~~~w~i~~~~~~~~~~~~~p~~p~~~  302 (318)
                                 +-+.+.+...|+++..++...-.+|.|+++
T Consensus       642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve  682 (1075)
T KOG2171|consen  642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVE  682 (1075)
T ss_pred             ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence                       124445666777776666666677777775

>KOG2023|consensus

Probab=99.83  E-value=7.5e-20  Score=177.59  Aligned_cols=243  Identities=19%  Similarity=0.257  Sum_probs=194.4

Q ss_pred             hhhhHHHHHHHHHHHhcc--CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          4 DKNLGIKIVQQIAILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      .|++|+-++|.+|+  ||  .|.||+++|+|.+++.|.|..|-||..+||||++.+.+.-..=.-+.+-|++.++++.+-
T Consensus       409 vrEagvLAlGAIAE--GcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll  486 (885)
T KOG2023|consen  409 VREAGVLALGAIAE--GCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL  486 (885)
T ss_pred             hhhhhHHHHHHHHH--HHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence            47899999999999  87  799999999999999999999999999999999999875532224788899999999999


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccchhhHHH--HHHHHHHHHhhcC-----c-c--cchHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQNRVC--TTVAIAIVAETCS-----P-F--TVLPA  145 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~~~~R~~--~~~ai~~i~~~~~-----p-~--~vip~  145 (318)
                      |.+++|+.+|+.+|+.+-+.-|+.      .++++|+..++  .+|+|..  .+.||+++|+.+|     | |  .+||+
T Consensus       487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~--kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPP  564 (885)
T KOG2023|consen  487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG--KYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPP  564 (885)
T ss_pred             cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--HHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccH
Confidence            999999999999999999988854      45555555544  4555554  5899999999987     2 3  79999


Q ss_pred             HHHHhc---CCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH---h----------------cCCHHHHHHHH
Q psy10471        146 LMNEYR---VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL---M----------------DRDLVHRQTAC  203 (318)
Q Consensus       146 L~~~~~---d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l---~----------------~~~~~~R~~a~  203 (318)
                      |+..+.   |.+.++ -..+++++++..++|..|.||.+   |.+.+++   .                ..|..+-..+.
T Consensus       565 Li~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~---~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sL  640 (885)
T KOG2023|consen  565 LIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQ---PVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSL  640 (885)
T ss_pred             HHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCH---HHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeH
Confidence            999773   433333 56899999999999999999987   3344433   1                11234446788


Q ss_pred             HHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471        204 ATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL  255 (318)
Q Consensus       204 ~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al  255 (318)
                      ++++.+++++. .+.++.+  ..++..++.+..|+-|+||++....++-++++-
T Consensus       641 DL~SGLaegLg-~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c  693 (885)
T KOG2023|consen  641 DLLSGLAEGLG-SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKAC  693 (885)
T ss_pred             HHHhHHHHHhh-hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence            89999999884 4445433  237888889999999999999999999999986

>KOG2171|consensus

Probab=99.77  E-value=1.1e-16  Score=163.99  Aligned_cols=296  Identities=19%  Similarity=0.223  Sum_probs=192.1

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHH----
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELL----   77 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll----   77 (318)
                      +-|++|+.++..+....|....||++.+.+++.+.+.|++..||.+|++++|.++......-. .+.+-.++..++    
T Consensus       133 ~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~  212 (1075)
T KOG2171|consen  133 SLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQ  212 (1075)
T ss_pred             chhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhH
Confidence            568999999999999999999999999999999999998766999999999998875421000 111111111111    


Q ss_pred             -----------------------------------------HHhhh--chHHHHHHHHHHH-------------------
Q psy10471         78 -----------------------------------------ELLKA--HKKAIRRATVNTF-------------------   95 (318)
Q Consensus        78 -----------------------------------------~~L~d--~~~~vR~~av~~l-------------------   95 (318)
                                                               ++.++  -+.++|..|+..+                   
T Consensus       213 ~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~  292 (1075)
T KOG2171|consen  213 EVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGH  292 (1075)
T ss_pred             hhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhc
Confidence                                                     11111  1223444444443                   


Q ss_pred             --------------------------------------------------------------------------------
Q psy10471         96 --------------------------------------------------------------------------------   95 (318)
Q Consensus        96 --------------------------------------------------------------------------------   95 (318)
                                                                                                      
T Consensus       293 ~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Al  372 (1075)
T KOG2171|consen  293 TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLAL  372 (1075)
T ss_pred             cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             HHHHhhhCHH------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-------cchHHHHHHhcCC-cchHHHHH
Q psy10471         96 GYIAKAIGPH------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-------TVLPALMNEYRVP-ELNVQNGV  161 (318)
Q Consensus        96 g~la~~igp~------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-------~vip~L~~~~~d~-~~~v~~~v  161 (318)
                      +.+++.++.+      .+++..++.|+|++-++|+++..|||-++....|.       .+.|+|...+.++ +..++..+
T Consensus       373 s~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahA  452 (1075)
T KOG2171|consen  373 SVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHA  452 (1075)
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHH
Confidence            3333322221      24444455555555555555555555555444441       3444555555443 34555555


Q ss_pred             HHHHHHHHH-HHccccccchhhhHH-HHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC--CchhHHHHHHHhhhhccc-CC
Q psy10471        162 LKALSFLFE-YIGEMGKDYIYAVTP-LLEDALMDRDLVHRQTACATIKHMALGVYGF--GCEDALTHLLNYVWPNIF-ET  236 (318)
Q Consensus       162 l~al~~i~~-~lg~~~~~yl~~iiP-~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~--~~~~~i~hll~~l~~~i~-d~  236 (318)
                      ..|+-.+++ ..|+...||++.++- .+.-+...+.+.+|.++..+|+++|...+..  .+.+++.+.+..++.+-. ++
T Consensus       453 a~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d  532 (1075)
T KOG2171|consen  453 AAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD  532 (1075)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh
Confidence            555445554 457788999999888 5666666777999999999999999988533  123333333333345544 45


Q ss_pred             ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh-----c-----cccccchH---HHHHHHHHhhccccccccccCCCC
Q psy10471        237 SPHLVQAFMDAVEGLRVALGPVRILQYVLQGL-----F-----HPARKVRD---VYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       237 ~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l-----~-----~~a~~~r~---~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      ...+|...+++++.++.|+|.+.|.|+--+.+     .     .+..+.|+   .+|..++++|+.   .|.||+|.+
T Consensus       533 ~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~---~F~p~L~~V  607 (1075)
T KOG2171|consen  533 LRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGD---DFAPFLPVV  607 (1075)
T ss_pred             hHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhch---hhHhHHHHH
Confidence            67899999999999999999999999887776     1     12233344   778888888865   999998876

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=99.58  E-value=6.8e-15  Score=124.34  Aligned_cols=146  Identities=22%  Similarity=0.354  Sum_probs=112.1

Q ss_pred             hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhccc--chhhHHHHHHHH---HH--HHhhc
Q psy10471         66 AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ--ERQNRVCTTVAI---AI--VAETC  137 (318)
Q Consensus        66 ~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~--~~~~R~~~~~ai---~~--i~~~~  137 (318)
                      +.+++.++..|+++|+. ++.++|++|++++|.||+ ++|+..- .......+.  +...-.+....+   +.  ..+.+
T Consensus         5 Y~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~   82 (160)
T PF11865_consen    5 YLDYPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-SIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY   82 (160)
T ss_pred             HHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-cccccCCccccccccccchhhHHhhccCCCchHHH
Confidence            36777777778899999 567799999999999995 9998442 111111100  011111111111   12  46888


Q ss_pred             CcccchHHHHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        138 SPFTVLPALMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       138 ~p~~vip~L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      +|..++.+||+.++|++.+.+ ..+++++.+||+++|.+|.+|+++++|.+.++++.++...|+...+.++.+..++
T Consensus        83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv  159 (160)
T PF11865_consen   83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV  159 (160)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999997665 7899999999999999999999999999999999999999999999998887765

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PRK09687 putative lyase; Provisional

Probab=99.51  E-value=2.3e-12  Score=118.64  Aligned_cols=217  Identities=14%  Similarity=0.124  Sum_probs=141.7

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHhhhC-H-
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIG-P-  104 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~-L~d~~~~vR~~av~~lg~la~~ig-p-  104 (318)
                      +.+.+.+..+++|+++.+|+.|+++||++......   -.+..+.   |..+ ++|+...||+.|+.++|.++..-. | 
T Consensus        53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~---L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~  126 (280)
T PRK09687         53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNI---LNNLALEDKSACVRASAINATGHRCKKNPLYS  126 (280)
T ss_pred             chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHH---HHHHHhcCCCHHHHHHHHHHHhcccccccccc
Confidence            45666677777888888888888888887542111   1122233   2233 466777888888888888753221 1 


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471        105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT  184 (318)
Q Consensus       105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii  184 (318)
                      ..++..+...+++++.++|..++.+++.+..    -.++|+|+..++|++..++..++.+++.+    +.    --+.++
T Consensus       127 ~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~~----~~~~~~  194 (280)
T PRK09687        127 PKIVEQSQITAFDKSTNVRFAVAFALSVIND----EAAIPLLINLLKDPNGDVRNWAAFALNSN----KY----DNPDIR  194 (280)
T ss_pred             hHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----HHHHHHHHHHhcCCCHHHHHHHHHHHhcC----CC----CCHHHH
Confidence            1345556666777766788888888764432    26778888888888888888887777765    10    125677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhH
Q psy10471        185 PLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV  264 (318)
Q Consensus       185 P~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~v  264 (318)
                      |.+...+.|.+..+|..++..++.+       +....+.++++.+ .     +++++..++++++.+    |.....|.+
T Consensus       195 ~~L~~~L~D~~~~VR~~A~~aLg~~-------~~~~av~~Li~~L-~-----~~~~~~~a~~ALg~i----g~~~a~p~L  257 (280)
T PRK09687        195 EAFVAMLQDKNEEIRIEAIIGLALR-------KDKRVLSVLIKEL-K-----KGTVGDLIIEAAGEL----GDKTLLPVL  257 (280)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHcc-------CChhHHHHHHHHH-c-----CCchHHHHHHHHHhc----CCHhHHHHH
Confidence            8888888888888888888887543       4456666666664 2     233666555555543    556788888


Q ss_pred             HHHhc-cccccchHHH
Q psy10471        265 LQGLF-HPARKVRDVY  279 (318)
Q Consensus       265 l~~l~-~~a~~~r~~~  279 (318)
                      ...+- +++.+++...
T Consensus       258 ~~l~~~~~d~~v~~~a  273 (280)
T PRK09687        258 DTLLYKFDDNEIITKA  273 (280)
T ss_pred             HHHHhhCCChhHHHHH
Confidence            88773 5555555433

>KOG0211|consensus

Probab=99.46  E-value=5.8e-13  Score=135.45  Aligned_cols=248  Identities=16%  Similarity=0.247  Sum_probs=203.2

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-  105 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-  105 (318)
                      -.++.|.+..+++|.+|+||++++..+|.+|...+......++++.+.   ++..|++.+||.+|+++++.+.+.+... 
T Consensus       235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~---~L~~DdqdsVr~~a~~~~~~l~~l~~~~~  311 (759)
T KOG0211|consen  235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLI---QLLRDDQDSVREAAVESLVSLLDLLDDDD  311 (759)
T ss_pred             HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHh---hhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence            357889999999999999999999999999987665332355555544   6669999999999999999999877765 


Q ss_pred             ----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471        106 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK  177 (318)
Q Consensus       106 ----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~  177 (318)
                          .+.+.+++...+.+-++|++++....-+....+|    +...|+.++.++|++.+++.++.+-...+...+...+-
T Consensus       312 d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~  391 (759)
T KOG0211|consen  312 DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY  391 (759)
T ss_pred             hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence                4556666666666669999999988776666665    57899999999999999998888888877776654332


Q ss_pred             cch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHH---HHHHHHH
Q psy10471        178 DYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFM---DAVEGLR  252 (318)
Q Consensus       178 ~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii---~~i~~i~  252 (318)
                      +-+  ..++|.+..++.+.+.++|...+..+..+++..   |++..+.|+++..+..++|+.+.||.+++   ..++...
T Consensus       392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~---~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~  468 (759)
T KOG0211|consen  392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPIL---PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN  468 (759)
T ss_pred             cccchhhhhHHHHHHHhcccchHHHHHhccccccCccC---CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence            333  457899999999999999999999998888887   69999999999999999999999999999   6777788


Q ss_pred             HHcChhhHHHhHHHHhccccccchHHHHHHH
Q psy10471        253 VALGPVRILQYVLQGLFHPARKVRDVYWKIY  283 (318)
Q Consensus       253 ~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~  283 (318)
                      ...|.+...+.++|++-..+.   +..||+-
T Consensus       469 ~v~g~~~~s~slLp~i~el~~---d~~wRvr  496 (759)
T KOG0211|consen  469 DVIGISTVSNSLLPAIVELAE---DLLWRVR  496 (759)
T ss_pred             Ccccchhhhhhhhhhhhhhcc---chhHHHH
Confidence            888999999999999976555   3356644

>PRK09687 putative lyase; Provisional

Probab=99.40  E-value=1.4e-11  Score=113.50  Aligned_cols=232  Identities=16%  Similarity=0.075  Sum_probs=167.1

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-HHHHH
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-HDVLA  109 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-~~~l~  109 (318)
                      ++-+.+.|.|.+..||..++++|+++.+        ++..+.   +.+.++++++.+|+.++++||+++..-.+ ...++
T Consensus        25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~---l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~   93 (280)
T PRK09687         25 DDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRL---AIELCSSKNPIERDIGADILSQLGMAKRCQDNVFN   93 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHH---HHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHH
Confidence            3446777899999999999999997753        122223   34556888899999999999998752221 24566


Q ss_pred             HHHHh-hcccchhhHHHHHHHHHHHHhhcC-c-ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471        110 TLLNN-LKVQERQNRVCTTVAIAIVAETCS-P-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL  186 (318)
Q Consensus       110 ~Ll~~-Lk~~~~~~R~~~~~ai~~i~~~~~-p-~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~  186 (318)
                      .|... +++++..+|..++.++|.++.... + ..++..+...+.|++..||..++.++..+    |.      +..+|.
T Consensus        94 ~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~~------~~ai~~  163 (280)
T PRK09687         94 ILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----ND------EAAIPL  163 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----CC------HHHHHH
Confidence            66665 567777899999999987753322 2 24566677788899999999998888532    21      567799


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471        187 LEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ  266 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~  266 (318)
                      +..++++.+..+|..++.+++.+..     +.......+    +..+.|.+++||..++.+++.    +|...-.|+++.
T Consensus       164 L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L----~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~  230 (280)
T PRK09687        164 LINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAF----VAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIK  230 (280)
T ss_pred             HHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHH----HHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHH
Confidence            9999999999999999999987721     222333333    455678999999999999987    577788888888


Q ss_pred             HhccccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471        267 GLFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       267 ~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      .+-++.     ..+++..++..-...+.+|.|-..
T Consensus       231 ~L~~~~-----~~~~a~~ALg~ig~~~a~p~L~~l  260 (280)
T PRK09687        231 ELKKGT-----VGDLIIEAAGELGDKTLLPVLDTL  260 (280)
T ss_pred             HHcCCc-----hHHHHHHHHHhcCCHhHHHHHHHH
Confidence            876543     235677777644445666665544

>KOG2023|consensus

Probab=99.38  E-value=3.4e-12  Score=124.90  Aligned_cols=219  Identities=20%  Similarity=0.196  Sum_probs=158.9

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |..+..+||-||.+.|..++|   .++|.+...|.++.+.||++++.++|.+|+++-.++ .+.++.++.-|++.|.|++
T Consensus       372 RkCSAAaLDVLanvf~~elL~---~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~-~p~LpeLip~l~~~L~DKk  447 (885)
T KOG2023|consen  372 RKCSAAALDVLANVFGDELLP---ILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGF-VPHLPELIPFLLSLLDDKK  447 (885)
T ss_pred             hhccHHHHHHHHHhhHHHHHH---HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhc-ccchHHHHHHHHHHhccCc
Confidence            566788999999998876654   467777777788899999999999999999887665 4444445555678889999


Q ss_pred             HHHHHHHHHHHHHHHhhhC---HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHH
Q psy10471         85 KAIRRATVNTFGYIAKAIG---PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV  161 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~ig---p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~v  161 (318)
                      +-||.-++||+++.++-+-   +++.+.                               .|+..|++.+-|.+..||+++
T Consensus       448 plVRsITCWTLsRys~wv~~~~~~~~f~-------------------------------pvL~~ll~~llD~NK~VQEAA  496 (885)
T KOG2023|consen  448 PLVRSITCWTLSRYSKWVVQDSRDEYFK-------------------------------PVLEGLLRRLLDSNKKVQEAA  496 (885)
T ss_pred             cceeeeeeeeHhhhhhhHhcCChHhhhH-------------------------------HHHHHHHHHHhcccHHHHHHH
Confidence            9999999999998776321   111111                               334446666778888999999


Q ss_pred             HHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHhh---hhcccCCC
Q psy10471        162 LKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYV---WPNIFETS  237 (318)
Q Consensus       162 l~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~l---~~~i~d~~  237 (318)
                      +.|+..+-+--|.+.+||+..|+-.+..++..=-..--.-+-++|+++|..++-. .+-..++-++|-+   |..+.|++
T Consensus       497 csAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D  576 (885)
T KOG2023|consen  497 CSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD  576 (885)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc
Confidence            9999999998899999999988888877773221111134578888888888311 1222333333322   56777887


Q ss_pred             hHHHHHHHHHHHHHHHHcChhh
Q psy10471        238 PHLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       238 ~~vr~~ii~~i~~i~~alG~~~  259 (318)
                      +++-- .++++.+++.++|.+|
T Consensus       577 KdLfP-LLEClSsia~AL~~gF  597 (885)
T KOG2023|consen  577 KDLFP-LLECLSSIASALGVGF  597 (885)
T ss_pred             chHHH-HHHHHHHHHHHHhccc
Confidence            77765 8999999999999765

>KOG0891|consensus

Probab=99.35  E-value=1.6e-11  Score=136.24  Aligned_cols=255  Identities=18%  Similarity=0.268  Sum_probs=196.5

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKA   82 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~d   82 (318)
                      -++++.++++|+.++|..|..+++.+++.+.+.+.|. ++..|+++.+++|+++++.+..+.+ ..++.++..+.+.++.
T Consensus       665 ~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~t  744 (2341)
T KOG0891|consen  665 EKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKT  744 (2341)
T ss_pred             HHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhH
Confidence            4688999999999999999999999999999999995 4888999999999999999976664 4555566667788888


Q ss_pred             -chHHHHHHHHHHHHHHHhhhCHHHHHHHHHH-hhcccch---h--hHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcc
Q psy10471         83 -HKKAIRRATVNTFGYIAKAIGPHDVLATLLN-NLKVQER---Q--NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPEL  155 (318)
Q Consensus        83 -~~~~vR~~av~~lg~la~~igp~~~l~~Ll~-~Lk~~~~---~--~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~  155 (318)
                       ....+|+++++..|..+ .++|+.......+ +++....   .  .+.+.......-.+.++|.+.+..++..++|+..
T Consensus       745 e~~~~ir~~~v~~~g~~g-~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~  823 (2341)
T KOG0891|consen  745 EQSSTIRREAIRLLGLLG-ALDPYKHKVTEGTSASKISSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSL  823 (2341)
T ss_pred             hhhhHHHHHHHHHhhhhc-ccchhHHHHHhhhhhHhhhhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhh
Confidence             56679999999999877 4888754433333 2331111   1  2222222221112777888899999999999977


Q ss_pred             hHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471        156 NVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF  234 (318)
Q Consensus       156 ~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~  234 (318)
                      ..+ ..+++++..+|..+|.+|..|+++++|.+..+.+..++..+....+.++....+++        +|++++ ++.++
T Consensus       824 ~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~~~--------~h~~~~-~~~i~  894 (2341)
T KOG0891|consen  824 SIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAIVR--------QHIRPY-MESIF  894 (2341)
T ss_pred             HHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhccc--------hhHhhh-hhhHH
Confidence            665 89999999999999999999999999999999998888888777777776666665        666665 35554


Q ss_pred             C-------CChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471        235 E-------TSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF  269 (318)
Q Consensus       235 d-------~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~  269 (318)
                      +       ++-.+...++..++.++.++|.++  +.|..++.++
T Consensus       895 ~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l  938 (2341)
T KOG0891|consen  895 TLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTML  938 (2341)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchh
Confidence            3       345677788999999999999876  6666666663

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.30  E-value=2.8e-10  Score=120.35  Aligned_cols=220  Identities=14%  Similarity=0.087  Sum_probs=113.5

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      ++.++.|...|+|+++.||.+|+.+|+.+.+.....       +   .|.+.|+++++.||.+|+..++.+... .+..+
T Consensus       651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------~---~L~~~L~~~d~~VR~~A~~aL~~~~~~-~~~~l  719 (897)
T PRK13800        651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------P---ALRDHLGSPDPVVRAAALDVLRALRAG-DAALF  719 (897)
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------H---HHHHHhcCCCHHHHHHHHHHHHhhccC-CHHHH
Confidence            456777888889999999999999998886532210       1   122334444455555555555544310 01000


Q ss_pred             ------------------------HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHH
Q psy10471        108 ------------------------LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLK  163 (318)
Q Consensus       108 ------------------------l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~  163 (318)
                                              ...|+..+++++..+|..++.+++.+...-  ...+|.|...++|+++.+|..++.
T Consensus       720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--~~~~~~L~~ll~D~d~~VR~aA~~  797 (897)
T PRK13800        720 AAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGG--APAGDAVRALTGDPDPLVRAAALA  797 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhcccc--chhHHHHHHHhcCCCHHHHHHHHH
Confidence                                    112333344444445555555444332211  123555666666666666666666


Q ss_pred             HHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHH
Q psy10471        164 ALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQA  243 (318)
Q Consensus       164 al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~  243 (318)
                      ++..+-.      .   +.+.+.+..++.+.+..+|..++.+++.+       +..+.+..+    .+.+.|++..||..
T Consensus       798 aLg~~g~------~---~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l-------~~~~a~~~L----~~~L~D~~~~VR~~  857 (897)
T PRK13800        798 ALAELGC------P---PDDVAAATAALRASAWQVRQGAARALAGA-------AADVAVPAL----VEALTDPHLDVRKA  857 (897)
T ss_pred             HHHhcCC------c---chhHHHHHHHhcCCChHHHHHHHHHHHhc-------cccchHHHH----HHHhcCCCHHHHHH
Confidence            5554311      0   12334455566666666666666666443       122222222    33345566666666


Q ss_pred             HHHHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHH
Q psy10471        244 FMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIY  283 (318)
Q Consensus       244 ii~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~  283 (318)
                      ++.+|..+   -|+....+.+...+-+++..||..-++.+
T Consensus       858 A~~aL~~~---~~~~~a~~~L~~al~D~d~~Vr~~A~~aL  894 (897)
T PRK13800        858 AVLALTRW---PGDPAARDALTTALTDSDADVRAYARRAL  894 (897)
T ss_pred             HHHHHhcc---CCCHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            66666653   23444555555555555555555444443

>KOG1241|consensus

Probab=99.27  E-value=7.4e-10  Score=110.18  Aligned_cols=285  Identities=15%  Similarity=0.179  Sum_probs=196.4

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA   86 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~   86 (318)
                      +|=.|++-+|+..|..|.|   .++|.+.+-+++++++.|++|+.++|-+-++-.+.-..+-...-+..+++.+.|+.-+
T Consensus       345 AAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~  421 (859)
T KOG1241|consen  345 AAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW  421 (859)
T ss_pred             HHHHHHHHHHHHhcccchh---hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence            3446899999999999998   5688888899999999999999999988774332111122222333455777899999


Q ss_pred             HHHHHHHHHHHHHhhhC----HH-----------------------------------------------------HHHH
Q psy10471         87 IRRATVNTFGYIAKAIG----PH-----------------------------------------------------DVLA  109 (318)
Q Consensus        87 vR~~av~~lg~la~~ig----p~-----------------------------------------------------~~l~  109 (318)
                      +|+.+-++||.+++.+.    +.                                                     .++.
T Consensus       422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~  501 (859)
T KOG1241|consen  422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIG  501 (859)
T ss_pred             hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHH
Confidence            99999999999888654    11                                                     1122


Q ss_pred             HHHHhhc--c-cchhhHHHHHHHHHHHH----hhcCcc--cchHHHHH----Hhc-----C----CcchHHHHHHHHHHH
Q psy10471        110 TLLNNLK--V-QERQNRVCTTVAIAIVA----ETCSPF--TVLPALMN----EYR-----V----PELNVQNGVLKALSF  167 (318)
Q Consensus       110 ~Ll~~Lk--~-~~~~~R~~~~~ai~~i~----~~~~p~--~vip~L~~----~~~-----d----~~~~v~~~vl~al~~  167 (318)
                      .|++.-.  + .+...|.....|++.+-    +.|+|.  .+.+..+.    .+.     .    +-.++|.-.+..+..
T Consensus       502 ~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~  581 (859)
T KOG1241|consen  502 SLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQS  581 (859)
T ss_pred             HHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHH
Confidence            2222211  1 11246777788887543    445542  22222222    111     1    113456778888888


Q ss_pred             HHHHHccccccchhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc-CCChHHHHHHH
Q psy10471        168 LFEYIGEMGKDYIYAVTPLLEDALMD-RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF-ETSPHLVQAFM  245 (318)
Q Consensus       168 i~~~lg~~~~~yl~~iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~-d~~~~vr~~ii  245 (318)
                      +..-.|.+..++-++++..|.+.+.. ++..+-..+.-+++.++..+ +.+|+..+..+-||+..+++ ..+-.|-.+++
T Consensus       582 i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L-g~~F~kym~~f~pyL~~gL~n~~e~qVc~~aV  660 (859)
T KOG1241|consen  582 IIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL-GKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAV  660 (859)
T ss_pred             HHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH-hHhHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            88888989999999999999999986 56777888999999999998 57889999999999998884 45667888999


Q ss_pred             HHHHHHHHHcChhh------HHHhHHHHhcccc--cc----chHHHHHHHHHhhccccccccccCC
Q psy10471        246 DAVEGLRVALGPVR------ILQYVLQGLFHPA--RK----VRDVYWKIYNSLYIGGQDALISAYP  299 (318)
Q Consensus       246 ~~i~~i~~alG~~~------~~~~vl~~l~~~a--~~----~r~~~w~i~~~~~~~~~~~~~p~~p  299 (318)
                      +.++.++.+++.++      +++.+++-+..++  |.    +...|.-|--++  +  ..|.||+.
T Consensus       661 glVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaI--g--~~F~~Yl~  722 (859)
T KOG1241|consen  661 GLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAI--G--ADFEPYLE  722 (859)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHH--H--HhHHHHHH
Confidence            99999999999865      5666666664433  22    233444443333  2  36777744

>KOG1241|consensus

Probab=99.26  E-value=1.3e-09  Score=108.46  Aligned_cols=261  Identities=17%  Similarity=0.174  Sum_probs=177.8

Q ss_pred             hhhhHHHHHHHHHHHhcc---CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---------------
Q psy10471          4 DKNLGIKIVQQIAILMGC---AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---------------   65 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~---~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---------------   65 (318)
                      .|..+..+.|.+-.  |.   ...|.+++.+|.++....|++--||+++.|++|++++..++-+.               
T Consensus       380 ~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g  457 (859)
T KOG1241|consen  380 NREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG  457 (859)
T ss_pred             hhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence            45677777776555  65   48999999999999999999999999999999999986652111               


Q ss_pred             -----------------------------------hhhHHHHHHHHHHHh--hh-chHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         66 -----------------------------------AREWMRICFELLELL--KA-HKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        66 -----------------------------------~~~~~~il~~Ll~~L--~d-~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                                                         .+.|..|+..|++.-  .| ++...|.+|..+++.+.+....+ +
T Consensus       458 L~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~-v  536 (859)
T KOG1241|consen  458 LNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDD-V  536 (859)
T ss_pred             hhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHH-H
Confidence                                               135555555555332  12 55668999999999998744422 2


Q ss_pred             HHH-------HHH---------hhcccch-hhHH---HHHHHHHHHHhhcCc----c--cchHHHHHHhcCC-cchHHHH
Q psy10471        108 LAT-------LLN---------NLKVQER-QNRV---CTTVAIAIVAETCSP----F--TVLPALMNEYRVP-ELNVQNG  160 (318)
Q Consensus       108 l~~-------Ll~---------~Lk~~~~-~~R~---~~~~ai~~i~~~~~p----~--~vip~L~~~~~d~-~~~v~~~  160 (318)
                      .+.       .+.         .|...++ +++.   .....+..|-.+.++    .  .+|..|++.+..+ +.-+++.
T Consensus       537 y~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~  616 (859)
T KOG1241|consen  537 YPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEE  616 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHH
Confidence            111       111         1222222 1111   112222222223332    1  6778888888764 4567899


Q ss_pred             HHHHHHHHHHHHccccccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCC--
Q psy10471        161 VLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETS--  237 (318)
Q Consensus       161 vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~--  237 (318)
                      ++-+++....++|..|..|.+.+.|.+..-++ ..+..+-..+..+++.++..++ ..+--...-+...+.+++..+.  
T Consensus       617 a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~~~h  695 (859)
T KOG1241|consen  617 AFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSPNLH  695 (859)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCcccc
Confidence            99999999999999999999999999999994 4456777888888888888875 1111111223334456665443  


Q ss_pred             hHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh
Q psy10471        238 PHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL  268 (318)
Q Consensus       238 ~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l  268 (318)
                      .+|+-.|+++.+-|+.++|.+|  +..++++.+
T Consensus       696 R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~ll  728 (859)
T KOG1241|consen  696 RNVKPAILSVFGDIALAIGADFEPYLEMVMPLL  728 (859)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5678899999999999999977  888888888

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.12  E-value=3.7e-09  Score=111.97  Aligned_cols=222  Identities=15%  Similarity=0.157  Sum_probs=129.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      -++.+.+.|+|++|.||++|+.+||.+..        ++.   +..|.+.|+|++.+||.+|+.+++.+++...+.   +
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~---~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~---~  687 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGF---GPALVAALGDGAAAVRRAAAEGLRELVEVLPPA---P  687 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhH---HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch---H
Confidence            45567788899999999999999998742        222   333556779999999999999999987654432   3


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHH---------------------
Q psy10471        110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFL---------------------  168 (318)
Q Consensus       110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i---------------------  168 (318)
                      .|...|++++..+|..++.+++.+...     -.+.+...++|+++.++..+++++..+                     
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~-----~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~a  762 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRAG-----DAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAV  762 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccC-----CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHH
Confidence            444555666667777777777654311     012344555666666665555555532                     


Q ss_pred             HHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471        169 FEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV  248 (318)
Q Consensus       169 ~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i  248 (318)
                      .+++|..... -...+|.+..++.|.++.+|..++..++.+       |......   ..+...+.|+++.||..++.++
T Consensus       763 a~aL~~~~~~-~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~-------g~~~~~~---~~l~~aL~d~d~~VR~~Aa~aL  831 (897)
T PRK13800        763 AKGLATLGAG-GAPAGDAVRALTGDPDPLVRAAALAALAEL-------GCPPDDV---AAATAALRASAWQVRQGAARAL  831 (897)
T ss_pred             HHHHHHhccc-cchhHHHHHHHhcCCCHHHHHHHHHHHHhc-------CCcchhH---HHHHHHhcCCChHHHHHHHHHH
Confidence            0011100000 011245566666666666666666666444       1111110   1123445556666777766666


Q ss_pred             HHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHH
Q psy10471        249 EGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNS  285 (318)
Q Consensus       249 ~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~  285 (318)
                      +.+    |.+.-.+.+.+.+-+++..||..-.+.+..
T Consensus       832 ~~l----~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~  864 (897)
T PRK13800        832 AGA----AADVAVPALVEALTDPHLDVRKAAVLALTR  864 (897)
T ss_pred             Hhc----cccchHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence            543    444455666666666666566544444433

>KOG1242|consensus

Probab=99.12  E-value=6.5e-09  Score=101.91  Aligned_cols=274  Identities=16%  Similarity=0.136  Sum_probs=171.1

Q ss_pred             HHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy10471         15 IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT   94 (318)
Q Consensus        15 La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~   94 (318)
                      +...+|....||+.+++|.++..+.|..+.||++|..+.-.+......+. .+.+.|-   ++.-+.+.+.+.+.+++..
T Consensus       202 ~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a-VK~llps---ll~~l~~~kWrtK~aslel  277 (569)
T KOG1242|consen  202 AQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA-VKLLLPS---LLGSLLEAKWRTKMASLEL  277 (569)
T ss_pred             HHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch-hhHhhhh---hHHHHHHHhhhhHHHHHHH
Confidence            34456778999999999999999999999999999988888877665544 2232222   1122222222345555555


Q ss_pred             HHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHH-----------------------------------
Q psy10471         95 FGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAI-----------------------------------  132 (318)
Q Consensus        95 lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~-----------------------------------  132 (318)
                      +|.+++ +.|.       ++++.+-..|-+..-.+|.....++-.                                   
T Consensus       278 lg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L  356 (569)
T KOG1242|consen  278 LGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSL  356 (569)
T ss_pred             HHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhh
Confidence            555553 3332       122223233322222222222222210                                   


Q ss_pred             -----HHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHhcCCHHHHHHHH
Q psy10471        133 -----VAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALMDRDLVHRQTAC  203 (318)
Q Consensus       133 -----i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~~~~~~~R~~a~  203 (318)
                           +++.-.|.  .++|.+-+.+++-+.++++..++.+.++++-..+  ...+|++.++|.+...+.+..|.+|..++
T Consensus       357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaa  436 (569)
T KOG1242|consen  357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAA  436 (569)
T ss_pred             cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHH
Confidence                 00001132  5778888888888888899999999999998833  68899999999999999999999999999


Q ss_pred             HHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC-ChHHHHHHHHHHHHHHHHcChhhH---HHhHHHHhcc--ccccchH
Q psy10471        204 ATIKHMALGVYGFGCEDALTHLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPVRI---LQYVLQGLFH--PARKVRD  277 (318)
Q Consensus       204 ~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~-~~~vr~~ii~~i~~i~~alG~~~~---~~~vl~~l~~--~a~~~r~  277 (318)
                      .+++.+.+.+...++++    ..|.++..+.+. ...-|....+.++.+...+|.+.+   +|-.+..+.+  +..++|+
T Consensus       437 rAL~~l~e~~g~~~f~d----~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~d  512 (569)
T KOG1242|consen  437 RALGALLERLGEVSFDD----LIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRD  512 (569)
T ss_pred             HHHHHHHHHHHhhcccc----cccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhcc
Confidence            99999988886555433    333334444332 223456667777788788887654   4444444432  4445666


Q ss_pred             HHHHHHHHhhcccccccccc
Q psy10471        278 VYWKIYNSLYIGGQDALISA  297 (318)
Q Consensus       278 ~~w~i~~~~~~~~~~~~~p~  297 (318)
                      .+--+.+-+...-++.+.||
T Consensus       513 g~~~~~~~lp~~~~~~~~~y  532 (569)
T KOG1242|consen  513 GVIWLFYLLPYIFGFQFQPY  532 (569)
T ss_pred             CeeehhhccchhhhHHhHHH
Confidence            65555555544444555555

>KOG0166|consensus

Probab=99.10  E-value=1.9e-09  Score=104.94  Aligned_cols=284  Identities=19%  Similarity=0.211  Sum_probs=192.2

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCCChHh-----HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCC----CCChhhHHH
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILPHLKN-----LVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPE----YVSAREWMR   71 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~-----l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~----~i~~~~~~~   71 (318)
                      |.+...-+.+...+-.+....-.|++.+     ++|.+...+. +.+|+.|..|+|+|-++|+++.+    ++ ..--.|
T Consensus        77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv-~agavp  155 (514)
T KOG0166|consen   77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV-DAGAVP  155 (514)
T ss_pred             CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc-cCCchH
Confidence            3444445555556555555556688865     5677888774 77899999999999999986653    22 123334


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc---
Q psy10471         72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP---  139 (318)
Q Consensus        72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p---  139 (318)
                      ++.   .++.+++..||..|++++|.++.. +|.        -++..|+..+..... ..++-++=+++.++....|   
T Consensus       156 ~fi---~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~  231 (514)
T KOG0166|consen  156 IFI---QLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPP  231 (514)
T ss_pred             HHH---HHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCc
Confidence            444   566999999999999999999863 332        246778887775554 5556666777777765543   


Q ss_pred             c----cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        140 F----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       140 ~----~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      +    .++|+|...++..+.++..-++.|++++.+.-.+. -+++  ..++|.+..++.+.+..++.-+..+++.++.+-
T Consensus       232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~-iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~  310 (514)
T KOG0166|consen  232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEK-IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS  310 (514)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHH-HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc
Confidence            2    78999999999999999999999999998753322 2333  468999999999999999988888887754332


Q ss_pred             cCCCch-hH-HH-HHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcChh---------hHHHhHHHHhcccccc-chHHH
Q psy10471        214 YGFGCE-DA-LT-HLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGPV---------RILQYVLQGLFHPARK-VRDVY  279 (318)
Q Consensus       214 ~~~~~~-~~-i~-hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~~---------~~~~~vl~~l~~~a~~-~r~~~  279 (318)
                         +.. .. +. ..++.+...+. .+..+.++.+.=+|..|+.  |..         .+.|.++.++....-+ =+|+-
T Consensus       311 ---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  311 ---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             ---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence               221 11 11 13444333333 2445588888888887765  543         2556666666432222 23799


Q ss_pred             HHHHHHhhcccccccccc
Q psy10471        280 WKIYNSLYIGGQDALISA  297 (318)
Q Consensus       280 w~i~~~~~~~~~~~~~p~  297 (318)
                      |-|.|..-.+. ...+.|
T Consensus       386 waIsN~ts~g~-~~qi~y  402 (514)
T KOG0166|consen  386 WAISNLTSSGT-PEQIKY  402 (514)
T ss_pred             HHHHhhcccCC-HHHHHH
Confidence            99999887665 333344

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.08  E-value=2.1e-08  Score=97.39  Aligned_cols=290  Identities=15%  Similarity=0.108  Sum_probs=199.5

Q ss_pred             hhhhHHHHHHHHHHHhcc---CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGC---AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLEL   79 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~---~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~   79 (318)
                      .|..|+.+.|..-.  |.   ...|++++.+|-++....|+.--|...++|++|++|+..+..+++ ..+.+.+...+--
T Consensus       382 nreaavmAfGSvm~--gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG  459 (858)
T COG5215         382 NREAAVMAFGSVMH--GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG  459 (858)
T ss_pred             hHHHHHHHhhhhhc--CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh
Confidence            45677777776544  54   378999999999999999998899999999999999988877776 3444455555544


Q ss_pred             hhhchHHHHHHHHHHHHHHHhhhCHH-------------HHHHHHHHh--hcccchhhHHHHHHHHHHHHhhcCcc----
Q psy10471         80 LKAHKKAIRRATVNTFGYIAKAIGPH-------------DVLATLLNN--LKVQERQNRVCTTVAIAIVAETCSPF----  140 (318)
Q Consensus        80 L~d~~~~vR~~av~~lg~la~~igp~-------------~~l~~Ll~~--Lk~~~~~~R~~~~~ai~~i~~~~~p~----  140 (318)
                      |.|. +.+-..+.|++-.++..+.|.             .+++.|++.  ++..+...|+....|++++-+-|...    
T Consensus       460 l~D~-p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~  538 (858)
T COG5215         460 LMDC-PFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDI  538 (858)
T ss_pred             hhcc-chHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHH
Confidence            5553 334445666666666655542             356666653  33434468888888887643333210    


Q ss_pred             -------------cchHHHHHHhcCCc----chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-HHHHHHH
Q psy10471        141 -------------TVLPALMNEYRVPE----LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTA  202 (318)
Q Consensus       141 -------------~vip~L~~~~~d~~----~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~-~~~R~~a  202 (318)
                                   +-|.-+-+.+..++    .+++..++..+..+...-+....+--.+++.+|.+.+...+ .....-.
T Consensus       539 ~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV  618 (858)
T COG5215         539 LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDV  618 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHH
Confidence                         12222223333333    35678889999999998887777777889999999998764 4455556


Q ss_pred             HHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh------HHHhHHHHhccccc--c
Q psy10471        203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR------ILQYVLQGLFHPAR--K  274 (318)
Q Consensus       203 ~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~------~~~~vl~~l~~~a~--~  274 (318)
                      ..+|+.++..+ +.+++....++.||+...+...+..|-.++++.++.++.++|.|+      |+..+.+-+..++.  .
T Consensus       619 ~~aIsal~~sl-~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~  697 (858)
T COG5215         619 YTAISALSTSL-EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRD  697 (858)
T ss_pred             HHHHHHHHHHH-HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccc
Confidence            66777776666 356788888999999999888889999999999999999999865      78888888865442  2


Q ss_pred             c----hHHHHHHHHHhhccccccccccCCCC
Q psy10471        275 V----RDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       275 ~----r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      +    ...|.-|-.++  +  -.|.|||.-+
T Consensus       698 lKPaiLSvFgDIAlai--g--a~F~~YL~~i  724 (858)
T COG5215         698 LKPAILSVFGDIALAI--G--ANFESYLDMI  724 (858)
T ss_pred             cchHHHHHHHHHHHHH--h--hhHHHHHHHH
Confidence            2    33343333333  2  3677776543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.02  E-value=1.3e-07  Score=92.09  Aligned_cols=260  Identities=18%  Similarity=0.129  Sum_probs=181.1

Q ss_pred             hhhHHHHHHHHHHHhccCcCC--ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC----C--hhhHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILP--HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV----S--AREWMRICFEL   76 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P--~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i----~--~~~~~~il~~L   76 (318)
                      |.|..-|+|++|......+.|  |+...+...+-.+.| +|++-.++.|+.-.+++..++..    +  .+.|+.|+..|
T Consensus       425 k~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~L  503 (858)
T COG5215         425 KSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNAL  503 (858)
T ss_pred             hhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHH
Confidence            667888999999988777766  566777778778888 79999999999998887665322    1  58888888887


Q ss_pred             HHH--hhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHH------------------hhcccchhhHHHH----HHHHHH
Q psy10471         77 LEL--LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLN------------------NLKVQERQNRVCT----TVAIAI  132 (318)
Q Consensus        77 l~~--L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~------------------~Lk~~~~~~R~~~----~~ai~~  132 (318)
                      +.-  ++++....|..+..++|.+.. +.|..+.+.+.+                  .|..+++..+-.+    ...+..
T Consensus       504 v~~t~~~~Ne~n~R~s~fsaLgtli~-~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~a  582 (858)
T COG5215         504 VKGTELALNESNLRVSLFSALGTLIL-ICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEA  582 (858)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            743  344667789999999999885 444333333322                  2233333111111    111111


Q ss_pred             HHhhcCc----c--cchHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHH
Q psy10471        133 VAETCSP----F--TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT  205 (318)
Q Consensus       133 i~~~~~p----~--~vip~L~~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~  205 (318)
                      |-.+..|    .  .+|.-+++.+..-.+ -+...|.-+|+.+..++|..|..|.+.++|.+.+.++..|..+-..+..+
T Consensus       583 iir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl  662 (858)
T COG5215         583 IIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL  662 (858)
T ss_pred             HHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH
Confidence            1122222    1  466677777765544 34578999999999999999999999999999999988888888999999


Q ss_pred             HHHHhhhhcCCCchhHHHHHHHhhhhcccCC--ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471        206 IKHMALGVYGFGCEDALTHLLNYVWPNIFET--SPHLVQAFMDAVEGLRVALGPVRILQYVLQGL  268 (318)
Q Consensus       206 i~~la~~~~~~~~~~~i~hll~~l~~~i~d~--~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l  268 (318)
                      ++.++..++ .++--.-.-+.+.+.+++..+  ..+++-.|++..+-|+.++|.+| .+|+-..|
T Consensus       663 vgdlantl~-~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F-~~YL~~im  725 (858)
T COG5215         663 VGDLANTLG-TDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANF-ESYLDMIM  725 (858)
T ss_pred             HHHHHHHhh-hhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhH-HHHHHHHH
Confidence            999998874 333223333455556666554  35688899999999999999865 44444433

>KOG0166|consensus

Probab=98.94  E-value=1.1e-08  Score=99.57  Aligned_cols=244  Identities=18%  Similarity=0.186  Sum_probs=171.4

Q ss_pred             hHHHHHHHHHHHhccC--cCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          7 LGIKIVQQIAILMGCA--ILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~--~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      -+.-++..+|.  |..  -.-.+ ..-+|.++.++..++..||+.|+|+||.+|..++.+-+.---..++..|+.++..+
T Consensus       129 eAAWaLTnIAs--gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~  206 (514)
T KOG0166|consen  129 EAAWALTNIAS--GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS  206 (514)
T ss_pred             HHHHHHHHHhc--CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc
Confidence            44556666666  542  22223 36889999999999999999999999999987764222111112455566666664


Q ss_pred             -hHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHH
Q psy10471         84 -KKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMN  148 (318)
Q Consensus        84 -~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~  148 (318)
                       ..+..|.+.|++..+...-.|.       .+++.|...++..|..+..-+.-|++++++....       +.++|.|..
T Consensus       207 ~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~  286 (514)
T KOG0166|consen  207 DKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD  286 (514)
T ss_pred             cchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH
Confidence             4478999999999999876542       5788888888888887777788888888754432       579999999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCc-hhHHH-H
Q psy10471        149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGC-EDALT-H  224 (318)
Q Consensus       149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~-~~~i~-h  224 (318)
                      .+..++..++..++.++.+|.-+-+...---+ ...+|.|..++. +...+.|+.++++|+.++-+-.  .. ...+. .
T Consensus       287 lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~--~qiqaVida~  364 (514)
T KOG0166|consen  287 LLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ--EQIQAVIDAN  364 (514)
T ss_pred             HHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH--HHHHHHHHcc
Confidence            99999999999999999998764332221122 458899999998 5556799999999988755432  11 11111 1


Q ss_pred             HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      ++|.++..+...+-++|+.+.=+|+.++..
T Consensus       365 l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  365 LIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             cHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            555555555556667888777777755443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.93  E-value=2.9e-09  Score=82.31  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=80.2

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      .|+.|+.+|...|+..|..+.+|+++|+|.++..+.|++++||..|+.+|.+++...+..+ .+.+..|+..|.+...|+
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP   80 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence            5889999999999999999999999999999999999999999999999999999887765 567888888899999999


Q ss_pred             hHHHHHHH
Q psy10471         84 KKAIRRAT   91 (318)
Q Consensus        84 ~~~vR~~a   91 (318)
                      +.+||.+|
T Consensus        81 d~~Vr~~a   88 (97)
T PF12755_consen   81 DENVRSAA   88 (97)
T ss_pred             chhHHHHH
Confidence            99999876

>KOG0915|consensus

Probab=98.92  E-value=1.9e-07  Score=99.07  Aligned_cols=227  Identities=15%  Similarity=0.185  Sum_probs=148.3

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh--
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK--  100 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~--  100 (318)
                      +--|.++|+.-+++.|.+..++||+++|.||.++-++-+...-.+.++.++..+++.+.|=+.+||.+|=++.-.+++  
T Consensus      1033 vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1033 VDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999998754322146666677878888888788899886555544433  


Q ss_pred             -hhC-H------HHHHHHHHHhhcccch-----hhHHHHHHHHHHHHhhcC----cc--cchHHHHHHhcCCcch-----
Q psy10471        101 -AIG-P------HDVLATLLNNLKVQER-----QNRVCTTVAIAIVAETCS----PF--TVLPALMNEYRVPELN-----  156 (318)
Q Consensus       101 -~ig-p------~~~l~~Ll~~Lk~~~~-----~~R~~~~~ai~~i~~~~~----p~--~vip~L~~~~~d~~~~-----  156 (318)
                       .++ +      .++++.++..|-++--     .+|......++-+++..+    |+  .++|.|++.+..-|+.     
T Consensus      1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred             hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHH
Confidence             222 1      3567777777654322     466666556655555444    54  7888888777554322     


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHHHHHHccccc
Q psy10471        157 -----------------------------------------------------------VQNGVLKALSFLFEYIGEMGK  177 (318)
Q Consensus       157 -----------------------------------------------------------v~~~vl~al~~i~~~lg~~~~  177 (318)
                                                                                 .+-+..+-+..+..-+|.+++
T Consensus      1193 s~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt 1272 (1702)
T KOG0915|consen 1193 SLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT 1272 (1702)
T ss_pred             HHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC
Confidence                                                                       122233333344555666677


Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        178 DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       178 ~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      ||-..++-.+.-.++|++.++|++.+.++++++...    .++.+++++.-+.-.++++.++.++..+.++-.|+.
T Consensus      1273 P~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S----s~dq~qKLie~~l~~~l~k~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1273 PYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS----SPDQMQKLIETLLADLLGKDESLKSISCATISNIAN 1344 (1702)
T ss_pred             cchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHH
Confidence            777666666666668889999999999999886654    345555555554555554444444544444443433

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.89  E-value=1.3e-07  Score=94.22  Aligned_cols=255  Identities=17%  Similarity=0.191  Sum_probs=161.4

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |..|+++++.++   ..++.|   .+.+.+.+.+.|++|.||+.|+.++.++....++.+... |.+.+.   +.|+|++
T Consensus        96 ~~lAL~~l~~i~---~~~~~~---~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~---~lL~d~~  165 (526)
T PF01602_consen   96 RGLALRTLSNIR---TPEMAE---PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLK---QLLSDKD  165 (526)
T ss_dssp             HHHHHHHHHHH----SHHHHH---HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHH---HHTTHSS
T ss_pred             HHHHHhhhhhhc---ccchhh---HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHh---hhccCCc
Confidence            556777777666   345664   467777778889999999999999999999888765222 777766   5559988


Q ss_pred             HHHHHHHHHHHHHH---HhhhCH--HHHHH---------------HHHHhhc------------------------ccch
Q psy10471         85 KAIRRATVNTFGYI---AKAIGP--HDVLA---------------TLLNNLK------------------------VQER  120 (318)
Q Consensus        85 ~~vR~~av~~lg~l---a~~igp--~~~l~---------------~Ll~~Lk------------------------~~~~  120 (318)
                      +.|+.+|+..+..+   -+...+  ..+..               .+++.|+                        ....
T Consensus       166 ~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~  245 (526)
T PF01602_consen  166 PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSP  245 (526)
T ss_dssp             HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhcccc
Confidence            99999999998887   111000  00111               1222221                        0000


Q ss_pred             hhHHHHHHHHHHHHhhcCc-----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC
Q psy10471        121 QNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD  195 (318)
Q Consensus       121 ~~R~~~~~ai~~i~~~~~p-----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~  195 (318)
                      .+...++.++.    ...|     ..+++.+...+.+++.+++-.+++++..+...-    .+++...-..+..+..+.|
T Consensus       246 ~V~~e~~~~i~----~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~----~~~v~~~~~~~~~l~~~~d  317 (526)
T PF01602_consen  246 SVVYEAIRLII----KLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN----PPAVFNQSLILFFLLYDDD  317 (526)
T ss_dssp             HHHHHHHHHHH----HHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC----HHHHGTHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHH----HhhcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc----chhhhhhhhhhheecCCCC
Confidence            11111111111    1122     257888999999999999999999999887653    1223222222333344889


Q ss_pred             HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhccccc
Q psy10471        196 LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPAR  273 (318)
Q Consensus       196 ~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~~~a~  273 (318)
                      ..+|..+..++..++..-   .....+..++.|+-+.   .+++++..++.+++.++....+  +.+.+.++..+.....
T Consensus       318 ~~Ir~~~l~lL~~l~~~~---n~~~Il~eL~~~l~~~---~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~  391 (526)
T PF01602_consen  318 PSIRKKALDLLYKLANES---NVKEILDELLKYLSEL---SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGD  391 (526)
T ss_dssp             HHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGG
T ss_pred             hhHHHHHHHHHhhccccc---chhhHHHHHHHHHHhc---cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccc
Confidence            999999999998876543   3445666676664122   4678999999999999999865  4488888888865544


Q ss_pred             cchHHHHHHH
Q psy10471        274 KVRDVYWKIY  283 (318)
Q Consensus       274 ~~r~~~w~i~  283 (318)
                      .+.+..|...
T Consensus       392 ~~~~~~~~~i  401 (526)
T PF01602_consen  392 YVSNEIINVI  401 (526)
T ss_dssp             GCHCHHHHHH
T ss_pred             cccchHHHHH
Confidence            4455445444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1240|consensus

Probab=98.85  E-value=4.4e-07  Score=94.54  Aligned_cols=256  Identities=16%  Similarity=0.131  Sum_probs=179.0

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC--CCC----hhhHHHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE--YVS----AREWMRICFELLE   78 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~--~i~----~~~~~~il~~Ll~   78 (318)
                      |-.|++++..++.-...  .--++-++|.++.+++|+.+.||.+|+.||-++-....+  ..+    ++.+.|-+.   .
T Consensus       440 K~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~---~  514 (1431)
T KOG1240|consen  440 KLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN---H  514 (1431)
T ss_pred             HHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH---h
Confidence            55778888888874433  334678999999999999999999999999998764432  222    344455544   4


Q ss_pred             Hhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHH------HHhhcccch----------hhHHHHHHHHHHHHhhcCccc
Q psy10471         79 LLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATL------LNNLKVQER----------QNRVCTTVAIAIVAETCSPFT  141 (318)
Q Consensus        79 ~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~L------l~~Lk~~~~----------~~R~~~~~ai~~i~~~~~p~~  141 (318)
                      ++.| ....||.+--.+++++|+..--+......      ++...++..          +.|..|.+.            
T Consensus       515 l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~------------  582 (1431)
T KOG1240|consen  515 LLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM------------  582 (1431)
T ss_pred             hhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH------------
Confidence            4477 56669999999999999754332111111      111111110          122222221            


Q ss_pred             chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH
Q psy10471        142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA  221 (318)
Q Consensus       142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~  221 (318)
                          ....+.|+++.|+++.++.|.-++.-.|..-  -=.-|++.+..+++|.|...|-...+.|..++-.+   |..+.
T Consensus       583 ----v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k--sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V---G~rs~  653 (1431)
T KOG1240|consen  583 ----VSSLLSDSPPIVKRALLESIIPLCVFFGKEK--SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV---GWRSV  653 (1431)
T ss_pred             ----HHHHHcCCchHHHHHHHHHHHHHHHHhhhcc--cccchHHHHHHHhcCccHHHHHHHHhhccceEEEE---eeeeH
Confidence                3345578888999999999998888887521  11357899999999999999999999887776655   44434


Q ss_pred             HHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh-----hHHHhHHHHhccccccchHHHHHHHHHh
Q psy10471        222 LTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFHPARKVRDVYWKIYNSL  286 (318)
Q Consensus       222 i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~-----~~~~~vl~~l~~~a~~~r~~~w~i~~~~  286 (318)
                      =+-++|++.+.+.|..+.|...+++++..+++.---+     .+.+-+.|.+.||+.-+|..-..+....
T Consensus       654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~  723 (1431)
T KOG1240|consen  654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAI  723 (1431)
T ss_pred             HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence            4567999999999999999999999999988754332     3788899999999987777555544333

>KOG0915|consensus

Probab=98.85  E-value=2.8e-07  Score=97.80  Aligned_cols=254  Identities=19%  Similarity=0.189  Sum_probs=179.1

Q ss_pred             HHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHH
Q psy10471         12 VQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRAT   91 (318)
Q Consensus        12 i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~a   91 (318)
                      .|.|+.-.|..+.||+++|+|.+..+==|++++||.+-..-=+.+.......+ -+.+-.|+.+|+.-+.+..-+||.++
T Consensus       981 f~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d~y~neIl~eLL~~lt~kewRVReas 1059 (1702)
T KOG0915|consen  981 FGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-DEYLNEILDELLVNLTSKEWRVREAS 1059 (1702)
T ss_pred             hHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-HHHHHHHHHHHHHhccchhHHHHHHH
Confidence            46677777899999999999999988889999999998877777776555443 35566688889988888888899999


Q ss_pred             HHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCc----------ccchHHHHHH
Q psy10471         92 VNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSP----------FTVLPALMNE  149 (318)
Q Consensus        92 v~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p----------~~vip~L~~~  149 (318)
                      +-++..+-.. .|.        +++.++++...|=...+|.+...+...++    ..|.+          ..++|.|+..
T Consensus      1060 clAL~dLl~g-~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~ 1138 (1702)
T KOG0915|consen 1060 CLALADLLQG-RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDE 1138 (1702)
T ss_pred             HHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhcc
Confidence            9999887753 232        23444444443333467777644443333    23332          1688888774


Q ss_pred             hcCC-cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC----------------------------------
Q psy10471        150 YRVP-ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR----------------------------------  194 (318)
Q Consensus       150 ~~d~-~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~----------------------------------  194 (318)
                      --.. -.++++..++.+..+.|+-|...+||++.++|.+.++...-                                  
T Consensus      1139 gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmm 1218 (1702)
T KOG0915|consen 1139 GIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMM 1218 (1702)
T ss_pred             CcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHH
Confidence            3322 36899999999999999999999999999999999988211                                  


Q ss_pred             ----------CH--------------------HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHH
Q psy10471        195 ----------DL--------------------VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAF  244 (318)
Q Consensus       195 ----------~~--------------------~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~i  244 (318)
                                |.                    .-|...+..|..++..+ +.+.--...+++.-++++++|-++.+|+..
T Consensus      1219 eTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~-~~emtP~sgKll~al~~g~~dRNesv~kaf 1297 (1702)
T KOG0915|consen 1219 ETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL-GSEMTPYSGKLLRALFPGAKDRNESVRKAF 1297 (1702)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh-ccccCcchhHHHHHHhhccccccHHHHHHH
Confidence                      10                    11122233333333332 111112334567777899999999999999


Q ss_pred             HHHHHHHHHHcChhhHHHhHHHHh
Q psy10471        245 MDAVEGLRVALGPVRILQYVLQGL  268 (318)
Q Consensus       245 i~~i~~i~~alG~~~~~~~vl~~l  268 (318)
                      -.+++-++..=.++.+..++...+
T Consensus      1298 AsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1298 ASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHH
Confidence            999999999999988777766666

>KOG1242|consensus

Probab=98.85  E-value=5.2e-07  Score=88.72  Aligned_cols=236  Identities=16%  Similarity=0.226  Sum_probs=170.8

Q ss_pred             hHHHHHHhhcCCCCHHH-HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--
Q psy10471         29 NLVEIIEHGLVDEQQKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~v-R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--  105 (318)
                      .++..+....+|.++.. |+++.-+.-......|+.. .+++.+++..++.-..|....||++|..+.-.+...+.++  
T Consensus       174 ~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~-EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV  252 (569)
T KOG1242|consen  174 GFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPF-EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV  252 (569)
T ss_pred             hHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCC-CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence            46666778888876554 5566666666666666544 4677888888888888888889999999999999889887  


Q ss_pred             -HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHH-----------
Q psy10471        106 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALS-----------  166 (318)
Q Consensus       106 -~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~-----------  166 (318)
                       .+++.++..+....-+....+++.++..++ |.|       -.++|-+...+.|..++++++..+++.           
T Consensus       253 K~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI  331 (569)
T KOG1242|consen  253 KLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI  331 (569)
T ss_pred             hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH
Confidence             568888888876533566666676765443 223       278899999999988888876666665           


Q ss_pred             -------------------HHHHHHcc-ccccch-----hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH
Q psy10471        167 -------------------FLFEYIGE-MGKDYI-----YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA  221 (318)
Q Consensus       167 -------------------~i~~~lg~-~~~~yl-----~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~  221 (318)
                                         .+.+++|. .|+.|+     ..++|.+.+-+.+++...++.++..++-++.-+.   ....
T Consensus       332 ~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve---Dp~~  408 (569)
T KOG1242|consen  332 QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE---DPKD  408 (569)
T ss_pred             HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc---CHHH
Confidence                               23333333 355555     3477888888888888888889999988877662   2233


Q ss_pred             HHHHHHhhhhccc----CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc
Q psy10471        222 LTHLLNYVWPNIF----ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH  270 (318)
Q Consensus       222 i~hll~~l~~~i~----d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~  270 (318)
                      +..+++-++|.++    +..|++|....-+++.+..-+|.+.| +-+.|-+++
T Consensus       409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e  460 (569)
T KOG1242|consen  409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSE  460 (569)
T ss_pred             HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHH
Confidence            3444444444443    46699999999999999999999888 888888865

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.82  E-value=2.1e-07  Score=103.27  Aligned_cols=275  Identities=10%  Similarity=0.037  Sum_probs=187.6

Q ss_pred             hhhHHHHHHHHHHHhccC--cCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH---HHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCA--ILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM---RICFELLE   78 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~--~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~---~il~~Ll~   78 (318)
                      +..++++++-|+.  |..  -..-+ ...+|.+.++|+..++.+|+.|+++||+++....+   .+...   ..+..|++
T Consensus       463 Q~~A~~~L~nLa~--~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~q---ir~iV~~aGAIppLV~  537 (2102)
T PLN03200        463 QEYAVALLAILTD--EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSED---IRACVESAGAVPALLW  537 (2102)
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHH---HHHHHHHCCCHHHHHH
Confidence            4466777777765  331  11111 25788888999999999999999999999974322   11211   34556778


Q ss_pred             HhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----------cccchHHHHH
Q psy10471         79 LLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----------PFTVLPALMN  148 (318)
Q Consensus        79 ~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----------p~~vip~L~~  148 (318)
                      +|++....+|..|.+++..+... +..+.++.++..|..++......+..+++.+...+.          -...+|.|.+
T Consensus       538 LL~sgd~~~q~~Aa~AL~nLi~~-~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~  616 (2102)
T PLN03200        538 LLKNGGPKGQEIAAKTLTKLVRT-ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ  616 (2102)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHhc-cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence            88998888999999999999863 444566778887876655555555666664422111          1258999999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--H
Q psy10471        149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--L  225 (318)
Q Consensus       149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--l  225 (318)
                      .++.++.++++.++.++..+|.+-.+.+..-+ ...+|.+...+++.+..+++.++++++.++.... .+....+.+  .
T Consensus       617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~-~~q~~~~v~~Ga  695 (2102)
T PLN03200        617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK-ENRKVSYAAEDA  695 (2102)
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCC
Confidence            99999999999999999999974332222222 3578889999999999999999999999986432 111111122  3


Q ss_pred             HHhhhhcccCCChHHHHHHHHHHHHHHHHc------ChhhHHHhHHHHhccccccchH-HHHHHHHHh
Q psy10471        226 LNYVWPNIFETSPHLVQAFMDAVEGLRVAL------GPVRILQYVLQGLFHPARKVRD-VYWKIYNSL  286 (318)
Q Consensus       226 l~~l~~~i~d~~~~vr~~ii~~i~~i~~al------G~~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~  286 (318)
                      .+.+...+.+.+.+++..++.+++.++..-      +.+...+.+...+-..+.+.|+ .-|.+++-.
T Consensus       696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~  763 (2102)
T PLN03200        696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLL  763 (2102)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            444567777788999999999998887644      2233456666666666666666 455544333

>KOG1824|consensus

Probab=98.81  E-value=7.9e-07  Score=90.77  Aligned_cols=264  Identities=14%  Similarity=0.188  Sum_probs=172.5

Q ss_pred             HHhhcCCCCHHHHHHHHHHHH-HHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH---HHH
Q psy10471         34 IEHGLVDEQQKVQENCIDLVG-RIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD---VLA  109 (318)
Q Consensus        34 l~~~l~d~~~~vR~aa~~~LG-~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~---~l~  109 (318)
                      +++++...+-..|.-|.+-|- .+-..+- .++-.....++..+|+.|.|.+..|+..|++++|.++++++.+.   ..+
T Consensus        10 LlekmtssDKDfRfMAtsDLm~eLqkdsi-~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve   88 (1233)
T KOG1824|consen   10 LLEKMTSSDKDFRFMATSDLMTELQKDSI-KLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVE   88 (1233)
T ss_pred             HHHHccCCCcchhhhhHHHHHHHHHhhhh-hccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            455555656667766665443 2322211 11124455567778899999999999999999999999998763   355


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCC----c--chHHHHHHHHHHHHHHHHcccc
Q psy10471        110 TLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVP----E--LNVQNGVLKALSFLFEYIGEMG  176 (318)
Q Consensus       110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~----~--~~v~~~vl~al~~i~~~lg~~~  176 (318)
                      .|..++-....|.|.....++-.+-.+.-|       .+|.+.+...+.+.    +  ..++-.++.-+.-+...+|.-.
T Consensus        89 ~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll  168 (1233)
T KOG1824|consen   89 NLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLL  168 (1233)
T ss_pred             HHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccC
Confidence            566665555668888888877654333333       26777777776652    2  2356667777777776677655


Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                      .+|-..+.-.+.--+...-..+|+-+..++++++..++..-+.+.++|++.-+-+.   ..+.-..+.+.++.+++.+-|
T Consensus       169 ~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~---~q~~~~rt~Iq~l~~i~r~ag  245 (1233)
T KOG1824|consen  169 PNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNR---TQMSATRTYIQCLAAICRQAG  245 (1233)
T ss_pred             cchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCC---CchHHHHHHHHHHHHHHHHhc
Confidence            55443333333333333347899999999999999997555678999987776444   556667778999999999999


Q ss_pred             hhh--HHHhHHHHhc-------cccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471        257 PVR--ILQYVLQGLF-------HPARKVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       257 ~~~--~~~~vl~~l~-------~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      -.+  -.+.+.|.+.       .+...+|+.---.+...-.+.++++.||-|.+
T Consensus       246 ~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei  299 (1233)
T KOG1824|consen  246 HRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI  299 (1233)
T ss_pred             chhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence            733  3334444442       23335666555566665566667777776544

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.79  E-value=7.6e-07  Score=88.63  Aligned_cols=247  Identities=20%  Similarity=0.187  Sum_probs=177.7

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      .+...++.+...+.+.++.+|..++.+|.+++...++.+.  .....++   -+..+++..+|..+++.+..+++.-.-.
T Consensus       264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~--~~~~~~~---~l~~~~d~~Ir~~~l~lL~~l~~~~n~~  338 (526)
T PF01602_consen  264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF--NQSLILF---FLLYDDDPSIRKKALDLLYKLANESNVK  338 (526)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG--THHHHHH---HHHCSSSHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh--hhhhhhh---eecCCCChhHHHHHHHHHhhcccccchh
Confidence            4567888889999999999999999999999987643331  2222222   2224778889999999999998866666


Q ss_pred             HHHHHHHHhhccc-chhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471        106 DVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA  182 (318)
Q Consensus       106 ~~l~~Ll~~Lk~~-~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~  182 (318)
                      .+++.|++.++.. +...|...+.+|+.+++.+.+.  ..+..+++.++.....+...++..+..+...-..    --..
T Consensus       339 ~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~----~~~~  414 (526)
T PF01602_consen  339 EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE----LREK  414 (526)
T ss_dssp             HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT----THHH
T ss_pred             hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh----hhHH
Confidence            7899999998533 5678999999999999888653  7889999999988778887788888777754221    1234


Q ss_pred             hHHHHHHHHhc-CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHH
Q psy10471        183 VTPLLEDALMD-RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRIL  261 (318)
Q Consensus       183 iiP~l~~~l~~-~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~  261 (318)
                      ++..+.+.+.+ .++.+++.+++.+|.-+.....  .+ ....++..+.....+++++++..++.++-.+....+.....
T Consensus       415 ~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~  491 (526)
T PF01602_consen  415 ILKKLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ  491 (526)
T ss_dssp             HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH
Confidence            56666766664 5688999999999998777742  11 45566666677777788899999999999999998864444


Q ss_pred             HhHHHHh----c--cccccchH---HHHHHHH
Q psy10471        262 QYVLQGL----F--HPARKVRD---VYWKIYN  284 (318)
Q Consensus       262 ~~vl~~l----~--~~a~~~r~---~~w~i~~  284 (318)
                      +-+++.+    -  +.+-.||+   -||++++
T Consensus       492 ~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~  523 (526)
T PF01602_consen  492 NEILQFLLSLATEDSSDPEVRDRAREYLRLLN  523 (526)
T ss_dssp             HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence            4444444    4  23334555   5666664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.76  E-value=6.2e-07  Score=79.77  Aligned_cols=185  Identities=14%  Similarity=0.197  Sum_probs=126.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH----HHHHHhhhchHHHHHHHHHHHHHHHhhhCH-
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF----ELLELLKAHKKAIRRATVNTFGYIAKAIGP-  104 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~----~Ll~~L~d~~~~vR~~av~~lg~la~~igp-  104 (318)
                      +.+.+-..-.+.++..|..|+..|-.++.........+.+.+.+.    .+...++|....+-+.|+.+++.++..+|. 
T Consensus         8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~   87 (228)
T PF12348_consen    8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH   87 (228)
T ss_dssp             S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence            333443334778899999999999999987622222455555544    455566666666888899999888887774 


Q ss_pred             ---H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-cccc-hHHHHHHhcCCcchHHHHHHHHHHHHHHHHc---c
Q psy10471        105 ---H--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-PFTV-LPALMNEYRVPELNVQNGVLKALSFLFEYIG---E  174 (318)
Q Consensus       105 ---~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-p~~v-ip~L~~~~~d~~~~v~~~vl~al~~i~~~lg---~  174 (318)
                         +  .+++.|++.+.+.....|..+..++..+...|. +..+ .+.+....++.++.++..+++.+..++...|   .
T Consensus        88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence               3  467778888887767788999999999999888 4555 7777778889999999999999999998888   3


Q ss_pred             cccc--chhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        175 MGKD--YIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       175 ~~~~--yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      .+..  +++.+.|.+...+.|+++.+|+.+-.++..+.....
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~  209 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP  209 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred             hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3333  357899999999999999999999999988866653

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.70  E-value=3.1e-07  Score=81.68  Aligned_cols=186  Identities=19%  Similarity=0.191  Sum_probs=119.9

Q ss_pred             hhhhHHHHHHHHHHHhc-----cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMG-----CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE   78 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g-----~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~   78 (318)
                      +|..++..+..+..-..     ..+.+.+++++..+...+.|....|-..|+.+++.++...+..+ .+....++..|++
T Consensus        23 ~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~-~~~~~~~l~~Ll~  101 (228)
T PF12348_consen   23 ERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHF-EPYADILLPPLLK  101 (228)
T ss_dssp             HHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhH-HHHHHHHHHHHHH
Confidence            57788888888887441     12455566666788889999899999999999999999877655 3344556667888


Q ss_pred             HhhhchHHHHHHHHHHHHHHHhhhC-HHHH-HHHHHHhhcccchhhHHHHHHHHHHHHhhcC---c----c----cchHH
Q psy10471         79 LLKAHKKAIRRATVNTFGYIAKAIG-PHDV-LATLLNNLKVQERQNRVCTTVAIAIVAETCS---P----F----TVLPA  145 (318)
Q Consensus        79 ~L~d~~~~vR~~av~~lg~la~~ig-p~~~-l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~---p----~----~vip~  145 (318)
                      .+.+.++.+|.+|..++-.+.+.++ +..+ ...+....+....+.|..++..+..+....+   +    .    .+.+.
T Consensus       102 ~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~  181 (228)
T PF12348_consen  102 KLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKA  181 (228)
T ss_dssp             GGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHH
Confidence            8899888999999999999999988 4455 5666666666666899999988877665554   1    1    48888


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHH
Q psy10471        146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA  190 (318)
Q Consensus       146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~  190 (318)
                      +...+.|+++++|..+-+++..+.+..|......+..+-|..++.
T Consensus       182 l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~  226 (228)
T PF12348_consen  182 LVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKY  226 (228)
T ss_dssp             HHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH--------------
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhccccc
Confidence            999999999999999999999998888877666665555555443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.66  E-value=1.9e-07  Score=86.01  Aligned_cols=281  Identities=16%  Similarity=0.145  Sum_probs=177.1

Q ss_pred             CCchhhhHHHHHHHHHHHhccCcCCChHhH-----HHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHH
Q psy10471          1 MSSDKNLGIKIVQQIAILMGCAILPHLKNL-----VEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVS---AREWMR   71 (318)
Q Consensus         1 ~~~~r~~~l~~i~~La~~~g~~~~P~l~~l-----~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~   71 (318)
                      +|.|=+..+.+.-..-..+..+-.|+++++     +|.+++.+ ..++.+.+-.|+|+|-.+|+++...-.   -..-.|
T Consensus        81 ~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVP  160 (526)
T COG5064          81 FSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVP  160 (526)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchH
Confidence            355556667777777777777788888764     67799999 457788899999999999997763111   123345


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC---HH----HHHHHHHHhhcccch--h-hHHHHHHHHHHHHhhcC--c
Q psy10471         72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIG---PH----DVLATLLNNLKVQER--Q-NRVCTTVAIAIVAETCS--P  139 (318)
Q Consensus        72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig---p~----~~l~~Ll~~Lk~~~~--~-~R~~~~~ai~~i~~~~~--p  139 (318)
                      ++.   ++|.+.++.||..++|++|.+|-.-.   .|    -++..+++.|.....  . .|..| =.++.++..-.  |
T Consensus       161 lfi---qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~T-WtLSNlcRGknP~P  236 (526)
T COG5064         161 LFI---QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNAT-WTLSNLCRGKNPPP  236 (526)
T ss_pred             HHH---HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhH-HHHHHhhCCCCCCC
Confidence            555   66699999999999999999885322   23    246778887763322  1 22222 12222332222  2


Q ss_pred             -----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        140 -----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       140 -----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                           .+++|.|.+....-++++---++-|++++...-......-+. .+.+.+..++.+.+..+..-+...++.++.+-
T Consensus       237 ~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~  316 (526)
T COG5064         237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS  316 (526)
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence                 379999999887777888888999999988743323323333 47789999999998888777777766654432


Q ss_pred             cCCCc-hhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh-----hHHHhHHHHhcc-----ccccchHHHH
Q psy10471        214 YGFGC-EDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----RILQYVLQGLFH-----PARKVRDVYW  280 (318)
Q Consensus       214 ~~~~~-~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~-----~~~~~vl~~l~~-----~a~~~r~~~w  280 (318)
                         +. -..++.  .++.+.+.+..+-..+|+.++=+|..|..  |.-     .+--.+.|.+.|     +=+.-+|+-|
T Consensus       317 ---D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~kKEACW  391 (526)
T COG5064         317 ---DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACW  391 (526)
T ss_pred             ---ccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence               21 112221  23333233333555788877766655421  221     122334444444     2233458999


Q ss_pred             HHHHHhhccc
Q psy10471        281 KIYNSLYIGG  290 (318)
Q Consensus       281 ~i~~~~~~~~  290 (318)
                      .+.|+.|++.
T Consensus       392 AisNatsgg~  401 (526)
T COG5064         392 AISNATSGGL  401 (526)
T ss_pred             HHHhhhcccc
Confidence            9999998663

>KOG1824|consensus

Probab=98.65  E-value=2.5e-06  Score=87.24  Aligned_cols=227  Identities=18%  Similarity=0.228  Sum_probs=154.2

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhC-CCCCC----------------
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRG-PEYVS----------------   65 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~-~~~i~----------------   65 (318)
                      +.|+.++-.+||+..  |.+ .-+-+++-..+++.++.++..|+.||..|||.++.+. ..|+.                
T Consensus       834 ~ikvfa~LslGElgr--~~~-~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLL  910 (1233)
T KOG1824|consen  834 SIKVFALLSLGELGR--RKD-LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLL  910 (1233)
T ss_pred             hHHHHHHhhhhhhcc--CCC-CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHH
Confidence            467777778888777  323 3344566668899999999999999999999999733 21110                


Q ss_pred             ----------------hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHH
Q psy10471         66 ----------------AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA  129 (318)
Q Consensus        66 ----------------~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~a  129 (318)
                                      .+....|+..|++.....+...|-..-+++|.++ .+.|..+++.|-..++.+.-.+|..++-|
T Consensus       911 LhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~-l~epesLlpkL~~~~~S~a~~~rs~vvsa  989 (1233)
T KOG1824|consen  911 LHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV-LIEPESLLPKLKLLLRSEASNTRSSVVSA  989 (1233)
T ss_pred             HHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH-hCChHHHHHHHHHHhcCCCcchhhhhhhe
Confidence                            1111122222222222234456777777888877 47888888888888887766788887777


Q ss_pred             HH-HHHhhcCcc-----cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH------------
Q psy10471        130 IA-IVAETCSPF-----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL------------  191 (318)
Q Consensus       130 i~-~i~~~~~p~-----~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l------------  191 (318)
                      +. .|.+.+-|-     .-+--++..+|||+++|++.++.++.+..+.=..-.++-++.++|.+-.=-            
T Consensus       990 vKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeM 1069 (1233)
T KOG1824|consen  990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEM 1069 (1233)
T ss_pred             eeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcc
Confidence            75 467777652     455678889999999999999999999887633334566677777765432            


Q ss_pred             ------hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC
Q psy10471        192 ------MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET  236 (318)
Q Consensus       192 ------~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~  236 (318)
                            .|.....|+.+...+=.+-.++-  +.-+ +.|+++.+-.++.|.
T Consensus      1070 GPFKH~VDdgLd~RKaaFEcmytLLdscl--d~~d-it~Fl~~~~~GL~Dh 1117 (1233)
T KOG1824|consen 1070 GPFKHTVDDGLDLRKAAFECMYTLLDSCL--DRLD-ITEFLNHVEDGLEDH 1117 (1233)
T ss_pred             cCccccccchHHHHHHHHHHHHHHHHhhh--hhcc-HHHHHHHHHhhcchh
Confidence                  13346899999998888877763  3222 346667666666554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.61  E-value=4.2e-06  Score=83.41  Aligned_cols=225  Identities=17%  Similarity=0.191  Sum_probs=147.8

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG  103 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig  103 (318)
                      .+++.+.+...|.++++.||+-++++|+++++.......   -.+.   +..++..+.+++.+|...|.+++..+++.-.
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l---~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~  151 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL---LPLIIQCLRDPDLSVAKAAIKALKKLASHPE  151 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH---HHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence            678888899999999999999999999999875432111   1333   3445677799999999999999999986322


Q ss_pred             HH-HH-----HHHHHHhhcccchhhHHHHHHHHHHHH-------hhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy10471        104 PH-DV-----LATLLNNLKVQERQNRVCTTVAIAIVA-------ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFE  170 (318)
Q Consensus       104 p~-~~-----l~~Ll~~Lk~~~~~~R~~~~~ai~~i~-------~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~  170 (318)
                      -. .+     ...|.+.+..++...|.-+...+..++       +.|....+++.+++.+++.+.-++..+++.+..+.+
T Consensus       152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            11 22     444444444323334444544444333       334445699999999999888889999999999988


Q ss_pred             HHccccccchh--hhHHHHHHHHhcCCHHHH------HHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHH
Q psy10471        171 YIGEMGKDYIY--AVTPLLEDALMDRDLVHR------QTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQ  242 (318)
Q Consensus       171 ~lg~~~~~yl~--~iiP~l~~~l~~~~~~~R------~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~  242 (318)
                        ......|+.  .+++.+.+.+.+.+..-|      -......+.++.. .....-.....++..+...+...++..+.
T Consensus       232 --~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~  308 (503)
T PF10508_consen  232 --TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIRE  308 (503)
T ss_pred             --ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHH
Confidence              444567884  488988888864432111      1222333334332 11111233344555554444457788999


Q ss_pred             HHHHHHHHHHHHcCh
Q psy10471        243 AFMDAVEGLRVALGP  257 (318)
Q Consensus       243 ~ii~~i~~i~~alG~  257 (318)
                      .++++++.++...-.
T Consensus       309 ~A~dtlg~igst~~G  323 (503)
T PF10508_consen  309 VAFDTLGQIGSTVEG  323 (503)
T ss_pred             HHHHHHHHHhCCHHH
Confidence            999999999877633

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=98.61  E-value=1.8e-06  Score=95.97  Aligned_cols=225  Identities=12%  Similarity=0.042  Sum_probs=157.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH----  105 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~----  105 (318)
                      .+|.++.+|++.++.+|+.|+++||.++....+....--=...+..|.++|+.+++.+|+.|+++++.++.. .++    
T Consensus       447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~i  525 (2102)
T PLN03200        447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRAC  525 (2102)
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence            577888999999999999999999999875442111000011333455777888889999999999998852 221    


Q ss_pred             ----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc-c-cc
Q psy10471        106 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG-K-DY  179 (318)
Q Consensus       106 ----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~-~-~y  179 (318)
                          .+++.|++.|+..+.+.+..++.++..+..... ...++.+...+..++.+++..++.++..++...+... . .-
T Consensus       526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g  604 (2102)
T PLN03200        526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG  604 (2102)
T ss_pred             HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence                357789999998777777778888876654332 3466888898988888999889999988876433210 0 00


Q ss_pred             --hhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        180 --IYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       180 --l~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                        -+.-+|.+.+++++.+...++.|+.++..+...-+.....-......+-++..+...+.++++.+.-++..+.....
T Consensus       605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK  683 (2102)
T ss_pred             hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence              13578999999999999999999999988876443111111111223333455556778899999999999987433

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=98.51  E-value=4.3e-07  Score=76.76  Aligned_cols=146  Identities=16%  Similarity=0.247  Sum_probs=97.9

Q ss_pred             cCCCh--HhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHH--
Q psy10471         23 ILPHL--KNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY--   97 (318)
Q Consensus        23 ~~P~l--~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~--   97 (318)
                      +.||.  ++|++.+...++.+ ++.+|+.+++.+|.|..--++.-  +....-...  ..-.+.+.......+...+.  
T Consensus         2 v~PY~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~--k~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~   77 (160)
T PF11865_consen    2 VDPYLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKH--KSIQKSLDS--KSSENSNDESTDISLPMMGISP   77 (160)
T ss_pred             cchHHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHH--hcccccCCc--cccccccccchhhHHhhccCCC
Confidence            46777  58999999999875 59999999999999876433211  000000000  00011111122222222222  


Q ss_pred             HHhhhCHHHHHHHHHHhhcccch-hhHHHHHHHHHHHH----hhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy10471         98 IAKAIGPHDVLATLLNNLKVQER-QNRVCTTVAIAIVA----ETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFE  170 (318)
Q Consensus        98 la~~igp~~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~----~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~  170 (318)
                      -.+..=|..++.+|++.|++++. ++|..+++|++.|+    ..|.||  +++|.+++..+.++.+.++.+++.++.+..
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            12223345789999999999988 68889999998776    457787  999999999999888999999999988876


Q ss_pred             HH
Q psy10471        171 YI  172 (318)
Q Consensus       171 ~l  172 (318)
                      ..
T Consensus       158 iv  159 (160)
T PF11865_consen  158 IV  159 (160)
T ss_pred             Hh
Confidence            43

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.50  E-value=3.2e-08  Score=68.17  Aligned_cols=53  Identities=15%  Similarity=0.123  Sum_probs=49.4

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRI   56 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~l   56 (318)
                      -|+.++.+||+++...+..+.|++++++|.+.+.|+|+++.||.+|+++||+|
T Consensus         3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            48899999999888777789999999999999999999999999999999975

...

>KOG1240|consensus

Probab=98.48  E-value=3.3e-06  Score=88.21  Aligned_cols=225  Identities=16%  Similarity=0.105  Sum_probs=164.7

Q ss_pred             hhhHHHHHHHHHHHhcc----CcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCC------------------
Q psy10471          5 KNLGIKIVQQIAILMGC----AILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGP------------------   61 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~----~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~------------------   61 (318)
                      |.+|+.+|.++-.....    +..=+.+-|+|.+..++.| ....||.+=+.+|+++|..+.                  
T Consensus       479 ra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~  558 (1431)
T KOG1240|consen  479 RATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDP  558 (1431)
T ss_pred             HHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            56777777776554432    3444566788888888888 567899999999999986432                  


Q ss_pred             C-----CCC----hhhHHHHHH-HHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHH
Q psy10471         62 E-----YVS----AREWMRICF-ELLELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTT  127 (318)
Q Consensus        62 ~-----~i~----~~~~~~il~-~Ll~~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~  127 (318)
                      +     ..+    ...+...+. ....+|.|+++-||++-+++++-++...|-.    .++.+|+..|+|.+.+.|.+..
T Consensus       559 nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFf  638 (1431)
T KOG1240|consen  559 NSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFF  638 (1431)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHH
Confidence            0     000    122233332 2345667888889999999999999988864    5799999999999989999999


Q ss_pred             HHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHH
Q psy10471        128 VAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTAC  203 (318)
Q Consensus       128 ~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~  203 (318)
                      +.|.-++--.|+    -.++|-+.+-+.|+|..|-..++++++.++|. |.-=|+++.+++-...=++-+++..+|+.+.
T Consensus       639 dsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~  717 (1431)
T KOG1240|consen  639 DSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVL  717 (1431)
T ss_pred             hhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHH
Confidence            988655443343    26899999999999999999999999999985 6555677766666666666799999999999


Q ss_pred             HHHHHHhhhhcCCCch-hHHHHHHHhhh
Q psy10471        204 ATIKHMALGVYGFGCE-DALTHLLNYVW  230 (318)
Q Consensus       204 ~~i~~la~~~~~~~~~-~~i~hll~~l~  230 (318)
                      ..|..++......+.. -.+.-+.||+.
T Consensus       718 ~iI~~~~~~ls~advyc~l~P~irpfl~  745 (1431)
T KOG1240|consen  718 GIIAAIARQLSAADVYCKLMPLIRPFLE  745 (1431)
T ss_pred             HHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence            9998888877433321 23444555554

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.48  E-value=2.1e-05  Score=78.38  Aligned_cols=245  Identities=19%  Similarity=0.153  Sum_probs=164.1

Q ss_pred             hhhHHHHHHHHHHHhccCcCC-ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhH-H-HHHHHHHHHhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILP-HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW-M-RICFELLELLK   81 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P-~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~-~-~il~~Ll~~L~   81 (318)
                      |..+++.|+.++......... .=+++++.++..++|++..|...|+++|..++.....   ...+ . .....|-+.++
T Consensus        94 r~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~---~~~l~~~~~~~~L~~l~~  170 (503)
T PF10508_consen   94 RRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG---LEQLFDSNLLSKLKSLMS  170 (503)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh---HHHHhCcchHHHHHHHHh
Confidence            566777777776532221111 2256899999999999999999999999999974332   1111 0 01233334445


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc--C----cccchHHHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC--S----PFTVLPALM  147 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~--~----p~~vip~L~  147 (318)
                      .++..+|.-+++.+..+++ ..|.        .+++.+++.|+++|-=.+..+...+..+++.-  .    ...+++.+.
T Consensus       171 ~~~~~vR~Rv~el~v~i~~-~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~  249 (503)
T PF10508_consen  171 QSSDIVRCRVYELLVEIAS-HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLS  249 (503)
T ss_pred             ccCHHHHHHHHHHHHHHHh-cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHH
Confidence            4566788888888888875 4443        26888889999877666667777777666421  1    136888888


Q ss_pred             HHhcCCcch-----HH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-----
Q psy10471        148 NEYRVPELN-----VQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-----  216 (318)
Q Consensus       148 ~~~~d~~~~-----v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-----  216 (318)
                      +.+.+.+.+     +. -+.++.++.++..-...+..-+|.++..+.+.+...|+..+..|.++++.++....|.     
T Consensus       250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~  329 (503)
T PF10508_consen  250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQ  329 (503)
T ss_pred             HHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            887654322     22 3444555555543122333444677777777788899999999999999998877642     


Q ss_pred             CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        217 GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       217 ~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      ...+.+.|.+..+...+.....++|...++++..+-.
T Consensus       330 ~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~  366 (503)
T PF10508_consen  330 KQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILT  366 (503)
T ss_pred             hcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            2245667777777777777778999999999999854

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.39  E-value=0.0001  Score=69.39  Aligned_cols=91  Identities=20%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL  108 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l  108 (318)
                      ..++.+...+.|+++.+|..+...+|++...        +   .+..+.+.+.|..+.+|..|+.++|.    +|....+
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~--------~---av~~l~~~l~d~~~~vr~~a~~aLg~----~~~~~a~  107 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSE--------E---AVPLLRELLSDEDPRVRDAAADALGE----LGDPEAV  107 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH--------H---HHHHHHHHhcCCCHHHHHHHHHHHHc----cCChhHH
Confidence            3444455555555555666666555544331        1   22223344455555556665555443    2223344


Q ss_pred             HHHHHhhc-ccchhhHHHHHHHHHHHH
Q psy10471        109 ATLLNNLK-VQERQNRVCTTVAIAIVA  134 (318)
Q Consensus       109 ~~Ll~~Lk-~~~~~~R~~~~~ai~~i~  134 (318)
                      +.|+..|. +++..+|...+.+++.+.
T Consensus       108 ~~li~~l~~d~~~~vR~~aa~aL~~~~  134 (335)
T COG1413         108 PPLVELLENDENEGVRAAAARALGKLG  134 (335)
T ss_pred             HHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence            55555554 344455555555555443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.35  E-value=3.4e-05  Score=72.62  Aligned_cols=170  Identities=22%  Similarity=0.303  Sum_probs=99.0

Q ss_pred             CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHhhh
Q psy10471         24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAI  102 (318)
Q Consensus        24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-d~~~~vR~~av~~lg~la~~i  102 (318)
                      ..-....+|.+...+.|.++.||..|+.+||.+-.       + +-.+.   +++.++ |.+..||..+.+++|.+..  
T Consensus        69 ~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------~-~a~~~---li~~l~~d~~~~vR~~aa~aL~~~~~--  135 (335)
T COG1413          69 ELGSEEAVPLLRELLSDEDPRVRDAAADALGELGD-------P-EAVPP---LVELLENDENEGVRAAAARALGKLGD--  135 (335)
T ss_pred             hhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC-------h-hHHHH---HHHHHHcCCcHhHHHHHHHHHHhcCc--
Confidence            44557888999999999999999999999887653       2 22222   334446 6888999999999998664  


Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471        103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA  182 (318)
Q Consensus       103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~  182 (318)
                        ...+..++..++++....   .+.+                +    .++...++..+..++..+..          +.
T Consensus       136 --~~a~~~l~~~l~~~~~~~---a~~~----------------~----~~~~~~~r~~a~~~l~~~~~----------~~  180 (335)
T COG1413         136 --ERALDPLLEALQDEDSGS---AAAA----------------L----DAALLDVRAAAAEALGELGD----------PE  180 (335)
T ss_pred             --hhhhHHHHHHhccchhhh---hhhh----------------c----cchHHHHHHHHHHHHHHcCC----------hh
Confidence              445777777777644211   0000                0    11111334444443332211          33


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471        183 VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG  250 (318)
Q Consensus       183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~  250 (318)
                      .+|.+...+.+.+..+|..++..++.+....         .++...+.....+++..+|...+.+++.
T Consensus       181 ~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~  239 (335)
T COG1413         181 AIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGE  239 (335)
T ss_pred             hhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence            4455566666666666666666665553332         1222333444555666666655555443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=98.34  E-value=4.7e-06  Score=77.03  Aligned_cols=252  Identities=19%  Similarity=0.201  Sum_probs=144.2

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHhhhCHH-
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK--KAIRRATVNTFGYIAKAIGPH-  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~--~~vR~~av~~lg~la~~igp~-  105 (318)
                      .-+|+++++|.+.+..||+.++|+||.+|..+..+-++----..+..+|+++.++.  -++-|.+.|++..+...=.|. 
T Consensus       157 ~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P  236 (526)
T COG5064         157 GAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPP  236 (526)
T ss_pred             CchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCC
Confidence            46899999999999999999999999999654421111000113344555555533  366677888888877654442 


Q ss_pred             ------HHHHHHHHhhcccchhhHHHHHHHHHHHHhh-----------------------------------cC------
Q psy10471        106 ------DVLATLLNNLKVQERQNRVCTTVAIAIVAET-----------------------------------CS------  138 (318)
Q Consensus       106 ------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~-----------------------------------~~------  138 (318)
                            +.++.|.+.+...+-.+=+-..=||+++++.                                   .|      
T Consensus       237 ~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~  316 (526)
T COG5064         237 DWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS  316 (526)
T ss_pred             chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence                  3444444444322211111111122222100                                   00      


Q ss_pred             --cc------cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471        139 --PF------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHM  209 (318)
Q Consensus       139 --p~------~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~l  209 (318)
                        .+      .++++|-..+..|-.++++.+|-.++.|..+-......-+ ..++|.+.+++...+...|+-|++++...
T Consensus       317 D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNa  396 (526)
T COG5064         317 DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNA  396 (526)
T ss_pred             ccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              01      3566676677777678888888888877653222222223 35889999999999999999999999887


Q ss_pred             hhhhcCCCchhHHHHHHHhhhhccc--------C-CChHHHHHHHHHHHHHHHHcChh---------hHHHhHH-HH-h-
Q psy10471        210 ALGVYGFGCEDALTHLLNYVWPNIF--------E-TSPHLVQAFMDAVEGLRVALGPV---------RILQYVL-QG-L-  268 (318)
Q Consensus       210 a~~~~~~~~~~~i~hll~~l~~~i~--------d-~~~~vr~~ii~~i~~i~~alG~~---------~~~~~vl-~~-l-  268 (318)
                      ..++.  +.-|.    +.|++..-+        + .+..+.+..+++++.+-+.-..+         .+.-||- .| | 
T Consensus       397 tsgg~--~~PD~----iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd  470 (526)
T COG5064         397 TSGGL--NRPDI----IRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMD  470 (526)
T ss_pred             hcccc--CCchH----HHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHH
Confidence            76654  22222    222222111        1 23346666678887776544333         2444443 11 1 


Q ss_pred             -cc-c-cccchHHHHHHHHHh
Q psy10471        269 -FH-P-ARKVRDVYWKIYNSL  286 (318)
Q Consensus       269 -~~-~-a~~~r~~~w~i~~~~  286 (318)
                       .| . ++.-+++|-+.|+-.
T Consensus       471 ~I~~~Q~s~n~~iy~KAYsII  491 (526)
T COG5064         471 AIHGLQDSVNRTIYDKAYSII  491 (526)
T ss_pred             HHHHhhhccccHHHHHHHHHH
Confidence             22 1 123457888877655

>KOG0211|consensus

Probab=98.34  E-value=3.7e-05  Score=79.14  Aligned_cols=276  Identities=16%  Similarity=0.142  Sum_probs=193.5

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |.++-+-+|.+|.+.+.  .--...++|.+..+.+|+...||.+|.++++.+.+......  ...-.+...+++...|..
T Consensus       254 r~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~~  329 (759)
T KOG0211|consen  254 RRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDGS  329 (759)
T ss_pred             HHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcChh
Confidence            45666677777777665  22234678888999999999999999999999998655432  233334445667778888


Q ss_pred             HHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCcc----cchHHHHHHhcC
Q psy10471         85 KAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSPF----TVLPALMNEYRV  152 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p~----~vip~L~~~~~d  152 (318)
                      .++|..+-+.+.-+.+.+||.    .......+.++++....|.+++.-....+    ..|++.    .++|..-...-|
T Consensus       330 ~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d  409 (759)
T KOG0211|consen  330 WRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD  409 (759)
T ss_pred             HHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc
Confidence            889999999999999999984    34666777778777778888877776544    334453    456877777788


Q ss_pred             CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhc
Q psy10471        153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPN  232 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~  232 (318)
                      ..+.++.+...-++.....+|  ...-++.+.|.+...+++.++.+|.+....+..+-......|.+-.-+..++-+...
T Consensus       410 ~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el  487 (759)
T KOG0211|consen  410 NALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVEL  487 (759)
T ss_pred             ccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhh
Confidence            888888877776666655555  244557788999999999999999999976644433222225554555555554444


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc-cccccchHHHHHHHHHh
Q psy10471        233 IFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF-HPARKVRDVYWKIYNSL  286 (318)
Q Consensus       233 i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~-~~a~~~r~~~w~i~~~~  286 (318)
                      ..+..-.+|..+++.+-..+..+|.++|-+.+-++.. ....+|.++..++-+++
T Consensus       488 ~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l  542 (759)
T KOG0211|consen  488 AEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNL  542 (759)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            3344567899999999999999998888777666663 23334445444444333

>KOG0212|consensus

Probab=98.34  E-value=1.3e-05  Score=78.14  Aligned_cols=237  Identities=15%  Similarity=0.123  Sum_probs=162.7

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |..|+..+...+...|....+|+..++|-+++.+.|++.+||.-||.++=.+|..+...+ ...+..|+..|.++..|..
T Consensus        60 rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaDsd  138 (675)
T KOG0212|consen   60 RKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSADSD  138 (675)
T ss_pred             ccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcCCc
Confidence            336777777777778887777999999999999999999999999999999998665443 3455556666666667766


Q ss_pred             HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHH
Q psy10471         85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKA  164 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~a  164 (318)
                      ..||..|              ++++.|++..-.++-+              ++.--..+|-|-..+.+-++..|..+++=
T Consensus       139 ~~V~~~a--------------eLLdRLikdIVte~~~--------------tFsL~~~ipLL~eriy~~n~~tR~flv~W  190 (675)
T KOG0212|consen  139 QNVRGGA--------------ELLDRLIKDIVTESAS--------------TFSLPEFIPLLRERIYVINPMTRQFLVSW  190 (675)
T ss_pred             cccccHH--------------HHHHHHHHHhcccccc--------------ccCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            6666432              3444444443322211              00001345555555556678889888888


Q ss_pred             HHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHH
Q psy10471        165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAF  244 (318)
Q Consensus       165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~i  244 (318)
                      +..+-..-+.++..|++.+.+.+.+.+.|....+|+..-.+++..-.-++.....--...+.+.+.+....+++.++..+
T Consensus       191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~a  270 (675)
T KOG0212|consen  191 LYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKA  270 (675)
T ss_pred             HHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHH
Confidence            87665555667889999999999999999999999766665554333322111110223345566777777899999999


Q ss_pred             HHHHHHHHHHcChhh--HHHhHHHHhcc
Q psy10471        245 MDAVEGLRVALGPVR--ILQYVLQGLFH  270 (318)
Q Consensus       245 i~~i~~i~~alG~~~--~~~~vl~~l~~  270 (318)
                      +.=|..+...-|.+.  +.+-++.+++.
T Consensus       271 l~Wi~efV~i~g~~~l~~~s~il~~iLp  298 (675)
T KOG0212|consen  271 LTWIQEFVKIPGRDLLLYLSGILTAILP  298 (675)
T ss_pred             HHHHHHHhcCCCcchhhhhhhhhhhccc
Confidence            999999988888876  44455555543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.31  E-value=4.7e-07  Score=62.27  Aligned_cols=55  Identities=22%  Similarity=0.354  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471         43 QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI   98 (318)
Q Consensus        43 ~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l   98 (318)
                      |.||++|+++||++++..++.. .+....++..|++.|+|+++.||..|++++|+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            7899999999999998777665 345555666777888998889999999999975

...

>PTZ00429 beta-adaptin; Provisional

Probab=98.27  E-value=0.00045  Score=71.60  Aligned_cols=236  Identities=13%  Similarity=0.068  Sum_probs=159.3

Q ss_pred             hhhHHH-HHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          5 KNLGIK-IVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         5 r~~~l~-~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      |..+++ +|..+..  |.++.+...+++.    .+...+..+|+-+-..+-.+++.-++     ...-.+..+.+.++|+
T Consensus        49 kk~alKkvIa~mt~--G~DvS~LF~dVvk----~~~S~d~elKKLvYLYL~~ya~~~pe-----lalLaINtl~KDl~d~  117 (746)
T PTZ00429         49 KKAAVKRIIANMTM--GRDVSYLFVDVVK----LAPSTDLELKKLVYLYVLSTARLQPE-----KALLAVNTFLQDTTNS  117 (746)
T ss_pred             HHHHHHHHHHHHHC--CCCchHHHHHHHH----HhCCCCHHHHHHHHHHHHHHcccChH-----HHHHHHHHHHHHcCCC
Confidence            333443 5555444  7777665555554    55666788899888888888764332     2222455677888889


Q ss_pred             hHHHHHHHHHHHHHHHhh-hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cccchHHHHHHhcCCcchHH
Q psy10471         84 KKAIRRATVNTFGYIAKA-IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PFTVLPALMNEYRVPELNVQ  158 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~-igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~~vip~L~~~~~d~~~~v~  158 (318)
                      ++-+|..|+++++.|... +-+ .++..+.+.+.+.+--+|..++.++..+.....    ....++.+...+.|.++.|.
T Consensus       118 Np~IRaLALRtLs~Ir~~~i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv  196 (746)
T PTZ00429        118 SPVVRALAVRTMMCIRVSSVLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVA  196 (746)
T ss_pred             CHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHH
Confidence            999999999999875531 111 256666777777666899999999988765432    23567888888899999999


Q ss_pred             HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCCh
Q psy10471        159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSP  238 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~  238 (318)
                      ..++.++..+.+.-+..+ ......+..+.+.+.+.+...+-...+++..-.+     ..++...++++.+.+.+...++
T Consensus       197 ~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P-----~~~~e~~~il~~l~~~Lq~~N~  270 (746)
T PTZ00429        197 SNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP-----SDKESAETLLTRVLPRMSHQNP  270 (746)
T ss_pred             HHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHhcCCCH
Confidence            999999999876433221 2234455556666677888777777777644211     2233456788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHcChh
Q psy10471        239 HLVQAFMDAVEGLRVALGPV  258 (318)
Q Consensus       239 ~vr~~ii~~i~~i~~alG~~  258 (318)
                      .|.-.++.++-.+.....++
T Consensus       271 AVVl~Aik~il~l~~~~~~~  290 (746)
T PTZ00429        271 AVVMGAIKVVANLASRCSQE  290 (746)
T ss_pred             HHHHHHHHHHHHhcCcCCHH
Confidence            77777777776665554444

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.25  E-value=5.6e-06  Score=62.05  Aligned_cols=86  Identities=23%  Similarity=0.373  Sum_probs=61.9

Q ss_pred             HHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         31 VEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        31 ~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      +|.++..+ +|+++.+|..++++||++.+        ++..+.   |.+.++|+++.||++|++++|.++    ..+.++
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~---L~~~l~d~~~~vr~~a~~aL~~i~----~~~~~~   65 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPA---LIELLKDEDPMVRRAAARALGRIG----DPEAIP   65 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHH---HHHHHTSSSHHHHHHHHHHHHCCH----HHHTHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHH---HHHHHcCCCHHHHHHHHHHHHHhC----CHHHHH
Confidence            45677777 88999999999999994432        344444   446669999999999999999875    355777


Q ss_pred             HHHHhhcccch-hhHHHHHHHHH
Q psy10471        110 TLLNNLKVQER-QNRVCTTVAIA  131 (318)
Q Consensus       110 ~Ll~~Lk~~~~-~~R~~~~~ai~  131 (318)
                      .|.+.+++.+. .+|...+.+++
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            77777765433 45666666553

>PTZ00429 beta-adaptin; Provisional

Probab=98.20  E-value=0.00028  Score=73.15  Aligned_cols=72  Identities=11%  Similarity=0.179  Sum_probs=58.0

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK  100 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~  100 (318)
                      .++.+++.+...+.|.+|.||++|+.++..+-...++.+....|.+.+.   ++|.|+++.|...|+.++-.+.+
T Consensus       137 i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~---~LL~D~dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        137 VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLV---ELLNDNNPVVASNAAAIVCEVND  208 (746)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHH---HHhcCCCccHHHHHHHHHHHHHH
Confidence            3455667778888999999999999999999887776653456776655   55689999999999999988865

>KOG2259|consensus

Probab=98.14  E-value=0.00015  Score=72.16  Aligned_cols=253  Identities=14%  Similarity=0.122  Sum_probs=163.9

Q ss_pred             CcCCChHh-HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471         22 AILPHLKN-LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLELLKAHKKAIRRATVNTFGYIA   99 (318)
Q Consensus        22 ~~~P~l~~-l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~-il~~Ll~~L~d~~~~vR~~av~~lg~la   99 (318)
                      .-.+|-++ +...++.+..|++++||..|+.++=++.++..  .     .. +.....+.++|....||.+|++.+-..+
T Consensus       190 ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L-----~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g  262 (823)
T KOG2259|consen  190 SSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--L-----SKACYSRAVKHLSDDYEDVRKAAVQLVSVWG  262 (823)
T ss_pred             CcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc--c-----cHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            34555554 44448889999999999999999999888322  1     12 2234557789999999999999988888


Q ss_pred             hhh-CHH-----------HHHHHHHHhhcccchhhHHHHHHHHHHH---Hhh----------------------------
Q psy10471        100 KAI-GPH-----------DVLATLLNNLKVQERQNRVCTTVAIAIV---AET----------------------------  136 (318)
Q Consensus       100 ~~i-gp~-----------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i---~~~----------------------------  136 (318)
                      +.. +|.           ++...+-..++|-+-++|+.++.++|.+   ++.                            
T Consensus       263 n~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~  342 (823)
T KOG2259|consen  263 NRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALY  342 (823)
T ss_pred             hcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHH
Confidence            765 442           3455566677777778999999998743   111                            


Q ss_pred             --c-----------Cc-------------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHH
Q psy10471        137 --C-----------SP-------------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDA  190 (318)
Q Consensus       137 --~-----------~p-------------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~  190 (318)
                        +           .|             ....-++..-+.|+=.+|+++++.++.....+    ...|-..-+-++.+.
T Consensus       343 s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s----sP~FA~~aldfLvDM  418 (823)
T KOG2259|consen  343 SSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS----SPGFAVRALDFLVDM  418 (823)
T ss_pred             hcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHH
Confidence              0           01             11222455555665567888888887766543    134555666778899


Q ss_pred             HhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC--hhhHHHhHHHHh
Q psy10471        191 LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG--PVRILQYVLQGL  268 (318)
Q Consensus       191 l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG--~~~~~~~vl~~l  268 (318)
                      ++|....+|-.+..++..++...+  =.++.    ++.++..+-|.++++|..+-+.++.....--  -+.....++.-+
T Consensus       419 fNDE~~~VRL~ai~aL~~Is~~l~--i~eeq----l~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L  492 (823)
T KOG2259|consen  419 FNDEIEVVRLKAIFALTMISVHLA--IREEQ----LRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNL  492 (823)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHhe--ecHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            999999999999999988887753  22333    4444777888999999988887776532211  122233333333


Q ss_pred             -ccccccchHHHHHHHHHhhcccccc
Q psy10471        269 -FHPARKVRDVYWKIYNSLYIGGQDA  293 (318)
Q Consensus       269 -~~~a~~~r~~~w~i~~~~~~~~~~~  293 (318)
                       ..|  ..|+..|+-+......|...
T Consensus       493 ~kyP--qDrd~i~~cm~~iGqnH~~l  516 (823)
T KOG2259|consen  493 GKYP--QDRDEILRCMGRIGQNHRRL  516 (823)
T ss_pred             hhCC--CCcHHHHHHHHHHhccChhh
Confidence             112  34566677555544444333

>TIGR02270 conserved hypothetical protein

Probab=98.05  E-value=0.00045  Score=67.00  Aligned_cols=150  Identities=18%  Similarity=0.085  Sum_probs=92.3

Q ss_pred             HHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471         30 LVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL  108 (318)
Q Consensus        30 l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l  108 (318)
                      .++.+++.| .|+.+.|+.+++.++.....   +     .   .+..|++.|.|....||.++.++||.    +++....
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~---~-----~---~~~~L~~~L~d~~~~vr~aaa~ALg~----i~~~~a~  119 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED---A-----L---DLRSVLAVLQAGPEGLCAGIQAALGW----LGGRQAE  119 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC---h-----H---HHHHHHHHhcCCCHHHHHHHHHHHhc----CCchHHH
Confidence            455566667 45667777776666642211   1     0   24445666677777788888888774    4445566


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHH
Q psy10471        109 ATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE  188 (318)
Q Consensus       109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~  188 (318)
                      ..|...|++++-.+|..+..+++.....     ..+.+...++|+++.++..++.++..+-.          ...+|.+.
T Consensus       120 ~~L~~~L~~~~p~vR~aal~al~~r~~~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~----------~~a~~~L~  184 (410)
T TIGR02270       120 PWLEPLLAASEPPGRAIGLAALGAHRHD-----PGPALEAALTHEDALVRAAALRALGELPR----------RLSESTLR  184 (410)
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhhccC-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc----------ccchHHHH
Confidence            6777777766656766666655543221     23456666677777787777777664332          23345566


Q ss_pred             HHHhcCCHHHHHHHHHHHHHH
Q psy10471        189 DALMDRDLVHRQTACATIKHM  209 (318)
Q Consensus       189 ~~l~~~~~~~R~~a~~~i~~l  209 (318)
                      ..+.+.++.+|+.++..+..+
T Consensus       185 ~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       185 LYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             HHHcCCCHHHHHHHHHHHHHc
Confidence            667777788887777766444

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.04  E-value=1.3e-05  Score=62.85  Aligned_cols=110  Identities=16%  Similarity=0.150  Sum_probs=77.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      +++.+.+.++|.++.+|..++.+|+.++...++...  .+.  .++..+++.++++++.+|+.++++++.++..-.+.  
T Consensus         8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~--   83 (120)
T cd00020           8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQ--AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN--   83 (120)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH--
Confidence            677788888999999999999999999987543221  111  34555667778888899999999999999743221  


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471        108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLF  169 (318)
Q Consensus       108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~  169 (318)
                      ...+.                          ...++|.+.+.+++++.+++..++.++..++
T Consensus        84 ~~~~~--------------------------~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          84 KLIVL--------------------------EAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHH--------------------------HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            00000                          0135666777777777777777777777654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.00  E-value=0.0011  Score=64.62  Aligned_cols=187  Identities=20%  Similarity=0.280  Sum_probs=138.7

Q ss_pred             cCcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHH
Q psy10471         21 CAILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYI   98 (318)
Q Consensus        21 ~~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~l   98 (318)
                      +...|...+++..++....+ .++..|.++++.++-++-..+.   ...+..++..+++.. .......|..++..++-+
T Consensus       181 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi  257 (415)
T PF12460_consen  181 DVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSISSSEDSELRPQALEILIWI  257 (415)
T ss_pred             ccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHH
Confidence            34667888899998887655 4589999999999999976332   124445555455444 334556777888888777


Q ss_pred             Hhhh----CHH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhh--------cC----c------c-cchHHHHHHhcCC
Q psy10471         99 AKAI----GPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAET--------CS----P------F-TVLPALMNEYRVP  153 (318)
Q Consensus        99 a~~i----gp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~--------~~----p------~-~vip~L~~~~~d~  153 (318)
                      ++++    .|.  ++++.|+..|.+  ......++++++++...        ++    +      | .++|.+++.++..
T Consensus       258 ~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~  335 (415)
T PF12460_consen  258 TKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA  335 (415)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Confidence            6653    243  577888888776  34566788999865421        11    1      2 7999999999998


Q ss_pred             cchHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        154 ELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       154 ~~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                      +.+.+...+.|++.+.+.+.. ...++++.++|.+.+.+.-.|..++..+.+++..+...
T Consensus       336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  336 DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            888999999999999999865 46789999999999999988898888888877665443

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>TIGR02270 conserved hypothetical protein

Probab=97.99  E-value=0.0015  Score=63.44  Aligned_cols=194  Identities=16%  Similarity=0.096  Sum_probs=132.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      .+..++..+.|.++.||.+++++||.+-        ...+.+.   |+..|++.++.+|+.++.++|....  +|+   .
T Consensus        87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~---L~~~L~~~~p~vR~aal~al~~r~~--~~~---~  150 (410)
T TIGR02270        87 DLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPW---LEPLLAASEPPGRAIGLAALGAHRH--DPG---P  150 (410)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHH---HHHHhcCCChHHHHHHHHHHHhhcc--ChH---H
Confidence            3788899999999999999999999532        2344445   4466699899999999998888543  343   3


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHH
Q psy10471        110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED  189 (318)
Q Consensus       110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~  189 (318)
                      .+.+.|++++..+|...+.+++.+...    ..+|.|...++|.+++|+..++.++..+    |.      +.-.+.+..
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~~~----~a~~~L~~al~d~~~~VR~aA~~al~~l----G~------~~A~~~l~~  216 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELPRR----LSESTLRLYLRDSDPEVRFAALEAGLLA----GS------RLAWGVCRR  216 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccc----cchHHHHHHHcCCCHHHHHHHHHHHHHc----CC------HhHHHHHHH
Confidence            566667788889999999999877543    5667788889999999999988888543    32      233355555


Q ss_pred             HHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc
Q psy10471        190 ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF  269 (318)
Q Consensus       190 ~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~  269 (318)
                      +....+...++.++..++..       |....+..+    ...+.+  +.+|..++.+++.    +|.....+.++..+-
T Consensus       217 ~~~~~g~~~~~~l~~~lal~-------~~~~a~~~L----~~ll~d--~~vr~~a~~AlG~----lg~p~av~~L~~~l~  279 (410)
T TIGR02270       217 FQVLEGGPHRQRLLVLLAVA-------GGPDAQAWL----RELLQA--AATRREALRAVGL----VGDVEAAPWCLEAMR  279 (410)
T ss_pred             HHhccCccHHHHHHHHHHhC-------CchhHHHHH----HHHhcC--hhhHHHHHHHHHH----cCCcchHHHHHHHhc
Confidence            55555555555544444222       222333333    333333  3488877777774    577777777777664


Q ss_pred             c
Q psy10471        270 H  270 (318)
Q Consensus       270 ~  270 (318)
                      +
T Consensus       280 d  280 (410)
T TIGR02270       280 E  280 (410)
T ss_pred             C
Confidence            3

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.96  E-value=0.00045  Score=59.34  Aligned_cols=112  Identities=15%  Similarity=0.235  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchh
Q psy10471         42 QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ  121 (318)
Q Consensus        42 ~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~  121 (318)
                      ||.||.+++.++|.++-+-+..  .+.|.+.+.   ..|+|+++.||+.|+..+.++... |.          +|...  
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~--ve~~~~~l~---~~L~D~~~~VR~~al~~Ls~Li~~-d~----------ik~k~--   62 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNL--VEPYLPNLY---KCLRDEDPLVRKTALLVLSHLILE-DM----------IKVKG--   62 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHH--HHhHHHHHH---HHHCCCCHHHHHHHHHHHHHHHHc-Cc----------eeehh--
Confidence            6889999999999999876654  355666655   777999999999999999987742 21          11110  


Q ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc
Q psy10471        122 NRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD  193 (318)
Q Consensus       122 ~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~  193 (318)
                                         .++..++..+.|++++++..+...+..+.+..+   ..-+...+|-+...+.+
T Consensus        63 -------------------~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~---~~~i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   63 -------------------QLFSRILKLLVDENPEIRSLARSFFSELLKKRN---PNIIYNNFPELISSLNN  112 (178)
T ss_pred             -------------------hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHhC
Confidence                               112225555678888888888777777776532   23334444444544443

>KOG1820|consensus

Probab=97.92  E-value=0.0011  Score=69.11  Aligned_cols=201  Identities=14%  Similarity=0.178  Sum_probs=149.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLE-LLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~-~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      +-+-+..-+-|..|.-|..|+..+..+.+..+ ...  +-+..++..++. .++|.+..+-..|...+..|++.+++...
T Consensus       254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~--~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV--KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             cChHHHHhhhccchHHHHHHHHHHHHHHhccccccc--cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            33445555667789999999999999988666 221  222223333333 35777888888899999999998887411


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471        108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL  187 (318)
Q Consensus       108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l  187 (318)
                                 ...                  -.+.|.++..+.+--.+++.++++++..++.+      .-+..+.+.+
T Consensus       332 -----------~~~------------------~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I  376 (815)
T KOG1820|consen  332 -----------KYA------------------KNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAI  376 (815)
T ss_pred             -----------HHH------------------HhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHH
Confidence                       000                  04566677777777788888899999888873      2456788999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhc-CCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471        188 EDALMDRDLVHRQTACATIKHMALGVY-GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ  266 (318)
Q Consensus       188 ~~~l~~~~~~~R~~a~~~i~~la~~~~-~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~  266 (318)
                      ..++++.++..|......+.+...... .+-+..++..+.+.+...+.|.+.+||.++.+++..+-..+|.+.+..++-+
T Consensus       377 ~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~  456 (815)
T KOG1820|consen  377 LEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKD  456 (815)
T ss_pred             HHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            999999999999998888877777765 3334567777788888999999999999999999999999999888776644


Q ss_pred             H
Q psy10471        267 G  267 (318)
Q Consensus       267 ~  267 (318)
                      .
T Consensus       457 ~  457 (815)
T KOG1820|consen  457 L  457 (815)
T ss_pred             h
Confidence            3

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.89  E-value=2.1e-05  Score=47.49  Aligned_cols=30  Identities=27%  Similarity=0.423  Sum_probs=27.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhh
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADR   59 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~   59 (318)
                      |+|.++..++|++|.||.+|+.+||++++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.88  E-value=0.00072  Score=58.05  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=73.1

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      -|..++.++|.|+.--+..+.|    .+|.+...|+|++|.||+.|+..|.++.....  +.+  -..++..++..+.|+
T Consensus         4 vR~n~i~~l~DL~~r~~~~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~--ik~--k~~l~~~~l~~l~D~   75 (178)
T PF12717_consen    4 VRNNAIIALGDLCIRYPNLVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM--IKV--KGQLFSRILKLLVDE   75 (178)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc--eee--hhhhhHHHHHHHcCC
Confidence            4778999999999965444444    55666678899999999999999999987532  211  122335566777999


Q ss_pred             hHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         84 KKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      ++.||..|...|..+...-+|..+
T Consensus        76 ~~~Ir~~A~~~~~e~~~~~~~~~i   99 (178)
T PF12717_consen   76 NPEIRSLARSFFSELLKKRNPNII   99 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhccchHH
Confidence            999999999999999987677643

>KOG4224|consensus

Probab=97.86  E-value=0.00056  Score=64.06  Aligned_cols=253  Identities=16%  Similarity=0.120  Sum_probs=159.3

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH----
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH----  105 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~----  105 (318)
                      +|.+..+++..++.||+-|..+||.++-... -.+-...=++++..|.+++.|..++++-.|--+++.++....-.    
T Consensus       210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv  289 (550)
T KOG4224|consen  210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV  289 (550)
T ss_pred             chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence            4667888888899999999999999984221 11101222346666778889988889988889999988754321    


Q ss_pred             --HHHHHHHHhhcccchhhHHHHHHHHHHHHh---hcCc---ccchHHHHHHhcCCc-chHHHHHHHHHHHHHHHHcccc
Q psy10471        106 --DVLATLLNNLKVQERQNRVCTTVAIAIVAE---TCSP---FTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMG  176 (318)
Q Consensus       106 --~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~---~~~p---~~vip~L~~~~~d~~-~~v~~~vl~al~~i~~~lg~~~  176 (318)
                        --++.+++.|+++....=...+-.|-.|+-   +-++   ...+-+|.+.++-.+ .++|-.++..+-....+-....
T Consensus       290 ~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~  369 (550)
T KOG4224|consen  290 EAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV  369 (550)
T ss_pred             hcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh
Confidence              126778888876543321111222211221   1111   245666888886544 3577777777766665433333


Q ss_pred             ccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH-HHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        177 KDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-HLLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       177 ~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~-hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      +.+. ..-+|.+..++.|.+..+|......++.++..=.  .++.... .+.|.++|-.++++.+||.+...++..++.-
T Consensus       370 ~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  370 SVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN--DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             HHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            3333 3578999999999999999888888877765432  3333332 2677788889999999999888887766654


Q ss_pred             cCh------------hhHHHhHHHHhc-cccccchH-HHHHHHHHh
Q psy10471        255 LGP------------VRILQYVLQGLF-HPARKVRD-VYWKIYNSL  286 (318)
Q Consensus       255 lG~------------~~~~~~vl~~l~-~~a~~~r~-~~w~i~~~~  286 (318)
                      +..            +-+..|+..-+- |..+ +|. .-|++..-+
T Consensus       448 v~~YarviEawd~P~~gi~g~L~Rfl~S~~~t-f~hia~wTI~qLl  492 (550)
T KOG4224|consen  448 VEHYARVIEAWDHPVQGIQGRLARFLASHELT-FRHIARWTIQQLL  492 (550)
T ss_pred             hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHH-HHHHHHHHHHHHH
Confidence            432            235555555442 3332 222 668876544

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.85  E-value=0.00019  Score=55.42  Aligned_cols=87  Identities=14%  Similarity=0.118  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHH
Q psy10471         45 VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRV  124 (318)
Q Consensus        45 vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~  124 (318)
                      .|+.++.+|+.+|...+..+ .+.+..|+..+++.+.|++.+||..|++++..+++..+.. +++.+-            
T Consensus         2 ~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~------------   67 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFN------------   67 (97)
T ss_pred             chhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHH------------
Confidence            48999999999999888765 5677778888999999999999999999999999866543 333221            


Q ss_pred             HHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHH
Q psy10471        125 CTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV  161 (318)
Q Consensus       125 ~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~v  161 (318)
                                      .+.++|.+...|++++|+.++
T Consensus        68 ----------------~IF~~L~kl~~D~d~~Vr~~a   88 (97)
T PF12755_consen   68 ----------------EIFDALCKLSADPDENVRSAA   88 (97)
T ss_pred             ----------------HHHHHHHHHHcCCchhHHHHH
Confidence                            334447777788888888765

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00017  Score=70.75  Aligned_cols=152  Identities=14%  Similarity=0.145  Sum_probs=115.5

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Q psy10471         34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHDVLATLL  112 (318)
Q Consensus        34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~-L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll  112 (318)
                      +.+++.|.++-.|.+++-+++----++|...       ++..||.. .+|.++.|||+|+-++|-++  +..++++...+
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTgn~~-------vv~~lLh~avsD~nDDVrRAAViAlGfvc--~~D~~~lv~tv  591 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTGNLG-------VVSTLLHYAVSDGNDDVRRAAVIALGFVC--CDDRDLLVGTV  591 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCCcch-------hHhhhheeecccCchHHHHHHHHheeeeE--ecCcchhhHHH
Confidence            5567788889999999998885444555533       44555555 58888999999999999887  56566666767


Q ss_pred             Hhhcccch-hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471        113 NNLKVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL  191 (318)
Q Consensus       113 ~~Lk~~~~-~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l  191 (318)
                      ..|..... ++|..++.|+|+-+-.-+....+..|-..+.|+..-||.+++-+++.|.--..++..|-+..|.-.|.+++
T Consensus       592 elLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI  671 (926)
T COG5116         592 ELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVI  671 (926)
T ss_pred             HHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHH
Confidence            77765444 79999999999876555555666667777789998999999889888887667777777777888888888


Q ss_pred             hcC
Q psy10471        192 MDR  194 (318)
Q Consensus       192 ~~~  194 (318)
                      .+.
T Consensus       672 ~~K  674 (926)
T COG5116         672 VDK  674 (926)
T ss_pred             hhh
Confidence            654

>KOG4653|consensus

Probab=97.84  E-value=0.0015  Score=67.04  Aligned_cols=220  Identities=17%  Similarity=0.231  Sum_probs=154.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRG--PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL  108 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~--~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l  108 (318)
                      ...-+..+.|+.+.+|-.|+..+..+++.-  .+.+   .--.++...++.|+|.+.-|=-.|++.+..+++ +-|..++
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~---~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-vy~e~il  804 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLI---QGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-VYPEDIL  804 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhh---hHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-hcchhhH
Confidence            344556677878889999999999999833  2322   223355557788899888899999999999997 5777788


Q ss_pred             HHHHHhhcccch----hhHHHHHHHHHHHHhhcCc----c--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccccc
Q psy10471        109 ATLLNNLKVQER----QNRVCTTVAIAIVAETCSP----F--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKD  178 (318)
Q Consensus       109 ~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~~~~p----~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~  178 (318)
                      +-|.........    ..|.-|-+||+.+...-|+    |  .++..+|...|+|+-..|.+.+..++.++..+.....+
T Consensus       805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            887775532222    2455566888766544443    3  78889999999998888888888888888877655566


Q ss_pred             chhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCch----------hHHHHHHHhhhhcccCCChHHHHHHHHH
Q psy10471        179 YIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCE----------DALTHLLNYVWPNIFETSPHLVQAFMDA  247 (318)
Q Consensus       179 yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~----------~~i~hll~~l~~~i~d~~~~vr~~ii~~  247 (318)
                      ++.++.-.+..+.+ ++...+|++|+.++..+-.+.   |++          |...-+++|+-.   ++++.++..+..+
T Consensus       885 ~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t---g~dlLpilr~~l~Dl~~tl~~~vr~---~~dd~~klhaql~  958 (982)
T KOG4653|consen  885 FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT---GEDLLPILRLLLIDLDETLLSYVRQ---HDDDGLKLHAQLC  958 (982)
T ss_pred             HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHH
Confidence            88888888887776 556899999999998875554   321          222223333311   2556677788888


Q ss_pred             HHHHHHHcChhhH
Q psy10471        248 VEGLRVALGPVRI  260 (318)
Q Consensus       248 i~~i~~alG~~~~  260 (318)
                      ++.+-.++..+.+
T Consensus       959 leei~a~l~n~~~  971 (982)
T KOG4653|consen  959 LEEIQAALENDDD  971 (982)
T ss_pred             HHHHHHHHHhccc
Confidence            8888777654433

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.76  E-value=0.013  Score=54.53  Aligned_cols=179  Identities=15%  Similarity=0.203  Sum_probs=123.5

Q ss_pred             HHHHHHHHhccCcCCCh--HhHHHHH-HhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHH
Q psy10471         11 IVQQIAILMGCAILPHL--KNLVEII-EHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAI   87 (318)
Q Consensus        11 ~i~~La~~~g~~~~P~l--~~l~~~l-~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~v   87 (318)
                      +.+.+-+.....+.|..  ..++.-+ .|.+++.++.+|+.|+++||-+|--....  ..+..+++.   ..++.....+
T Consensus         6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~--a~~~l~l~~---~~~~~~~~~v   80 (298)
T PF12719_consen    6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL--AKEHLPLFL---QALQKDDEEV   80 (298)
T ss_pred             HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHH---HHHHhCCHHH
Confidence            34444443334566644  4888776 59999999999999999999998644432  466677765   4445567789


Q ss_pred             HHHHHHHHHHHHhhhCH---------------HHHHHHHHHhhcccchhhHHHHHHHHHHHH--hhcCc-ccchHHHHHH
Q psy10471         88 RRATVNTFGYIAKAIGP---------------HDVLATLLNNLKVQERQNRVCTTVAIAIVA--ETCSP-FTVLPALMNE  149 (318)
Q Consensus        88 R~~av~~lg~la~~igp---------------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~--~~~~p-~~vip~L~~~  149 (318)
                      |..|++++.-+.-.-|+               ..++..+.+.+..++...|..+++++..+.  ....+ ..++-.|+-.
T Consensus        81 ~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~  160 (298)
T PF12719_consen   81 KITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL  160 (298)
T ss_pred             HHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            99999998776655442               245666777777666578888888888654  44555 6888889998


Q ss_pred             hcCCcchHHHHHHHHHHHHHHHHcccc---ccch-hhhHHHHHHHHhcC
Q psy10471        150 YRVPELNVQNGVLKALSFLFEYIGEMG---KDYI-YAVTPLLEDALMDR  194 (318)
Q Consensus       150 ~~d~~~~v~~~vl~al~~i~~~lg~~~---~~yl-~~iiP~l~~~l~~~  194 (318)
                      |=+|+.+-....-|+++.+|+..-..-   ...+ ..++|.+..+++..
T Consensus       161 yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  161 YFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence            988865555567788888888754321   1222 44677777777543

>KOG2259|consensus

Probab=97.75  E-value=0.0018  Score=64.73  Aligned_cols=240  Identities=13%  Similarity=0.123  Sum_probs=153.6

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCCC--------------hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCC-
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILPH--------------LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVS-   65 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P~--------------l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~-   65 (318)
                      ..+|+.+.+.++.++.-.+..++.+              -+.+.......++|....||.+|++.+.-.+...+ +.-. 
T Consensus       193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e  272 (823)
T KOG2259|consen  193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE  272 (823)
T ss_pred             cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence            3567777776666655333222222              12345556788999999999999999999988763 1111 


Q ss_pred             ---hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH----HHHHH-------------------------
Q psy10471         66 ---AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL----ATLLN-------------------------  113 (318)
Q Consensus        66 ---~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l----~~Ll~-------------------------  113 (318)
                         .+-....+..+.+.++|-+-.||..|-+.||.+.. ...+-+.    ..+|.                         
T Consensus       273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~-vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk  351 (823)
T KOG2259|consen  273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ-VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK  351 (823)
T ss_pred             hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHH-hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence               34556677778888899888899999999987554 2211111    11222                         


Q ss_pred             -----------------------------hhcccchhhHHHHHHHHHHHHhhcC--cccchHHHHHHhcCCcchHHHHHH
Q psy10471        114 -----------------------------NLKVQERQNRVCTTVAIAIVAETCS--PFTVLPALMNEYRVPELNVQNGVL  162 (318)
Q Consensus       114 -----------------------------~Lk~~~~~~R~~~~~ai~~i~~~~~--p~~vip~L~~~~~d~~~~v~~~vl  162 (318)
                                                   .|.|+=+.+|.+++.++..++-.--  +...+..|+..+.|+-..|+.-++
T Consensus       352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai  431 (823)
T KOG2259|consen  352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAI  431 (823)
T ss_pred             cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence                                         2233333556666666655553322  236777899999999999998899


Q ss_pred             HHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc---hhHHHHHHHhhhhcccCCChH
Q psy10471        163 KALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC---EDALTHLLNYVWPNIFETSPH  239 (318)
Q Consensus       163 ~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~---~~~i~hll~~l~~~i~d~~~~  239 (318)
                      .++..|...+..     =...++.+...+.|.+..+|+.+-.+++..    +..+.   +-.+.|++.-+-     -+|.
T Consensus       432 ~aL~~Is~~l~i-----~eeql~~il~~L~D~s~dvRe~l~elL~~~----~~~d~~~i~m~v~~lL~~L~-----kyPq  497 (823)
T KOG2259|consen  432 FALTMISVHLAI-----REEQLRQILESLEDRSVDVREALRELLKNA----RVSDLECIDMCVAHLLKNLG-----KYPQ  497 (823)
T ss_pred             HHHHHHHHHhee-----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHhh-----hCCC
Confidence            999998887331     145668889999999999999999988543    22222   234555544432     3344


Q ss_pred             HHHHHHHHHHHHHHHcC
Q psy10471        240 LVQAFMDAVEGLRVALG  256 (318)
Q Consensus       240 vr~~ii~~i~~i~~alG  256 (318)
                      =|..+..++..|+.-=|
T Consensus       498 Drd~i~~cm~~iGqnH~  514 (823)
T KOG2259|consen  498 DRDEILRCMGRIGQNHR  514 (823)
T ss_pred             CcHHHHHHHHHHhccCh
Confidence            45566666666655443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.75  E-value=0.00024  Score=52.98  Aligned_cols=85  Identities=21%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             HHHHHHh-hhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC
Q psy10471         74 FELLELL-KAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV  152 (318)
Q Consensus        74 ~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d  152 (318)
                      ..|++.| +++++.+|..+++++|.    ++..++++.|...+++++-.+|..++.+++.++.    ..++|.|.+.+++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~----~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----~~~~~~L~~~l~~   73 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGE----LGDPEAIPALIELLKDEDPMVRRAAARALGRIGD----PEAIPALIKLLQD   73 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHC----CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----HHTHHHHHHHHTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHcC
Confidence            3466777 77889999999999994    4556789999999988888999999999987653    3689999999977


Q ss_pred             C-cchHHHHHHHHHH
Q psy10471        153 P-ELNVQNGVLKALS  166 (318)
Q Consensus       153 ~-~~~v~~~vl~al~  166 (318)
                      + +..++..+.++++
T Consensus        74 ~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   74 DDDEVVREAAAEALG   88 (88)
T ss_dssp             -SSHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHhhcC
Confidence            5 4556888887764

>KOG2956|consensus

Probab=97.72  E-value=0.0016  Score=62.69  Aligned_cols=168  Identities=13%  Similarity=0.144  Sum_probs=118.0

Q ss_pred             cCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471         23 ILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA  101 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~  101 (318)
                      -..|-.+|+-.+.+.|.| .++..|.-|++-|+.++++.+... ...-+-.+..+|+.-+|.++.|=++|.+..-.....
T Consensus       323 Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l-~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las  401 (516)
T KOG2956|consen  323 WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL-FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS  401 (516)
T ss_pred             HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh
Confidence            366889999999999999 678889999999999999877533 222222334577888887776666666655555556


Q ss_pred             hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-----c--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc-
Q psy10471        102 IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-----P--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG-  173 (318)
Q Consensus       102 igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-----p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg-  173 (318)
                      ..|..-+..+...+...+++.-+++....-.+++...     +  -.++|.+++.|...+..||+.++=++-.+..-+| 
T Consensus       402 ~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~  481 (516)
T KOG2956|consen  402 HLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM  481 (516)
T ss_pred             hCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence            7777555554444443444333333333333443322     2  3789999999999999999999999999999999 


Q ss_pred             cccccchhhhHHHHHHHH
Q psy10471        174 EMGKDYIYAVTPLLEDAL  191 (318)
Q Consensus       174 ~~~~~yl~~iiP~l~~~l  191 (318)
                      .+++||+.++...-.+++
T Consensus       482 ~~mePhL~~Lt~sk~~Ll  499 (516)
T KOG2956|consen  482 EEMEPHLEQLTSSKLNLL  499 (516)
T ss_pred             HhhhhHhhhccHHHHHHH
Confidence            789999987655544444

>KOG2956|consensus

Probab=97.72  E-value=0.0052  Score=59.35  Aligned_cols=193  Identities=13%  Similarity=0.111  Sum_probs=109.1

Q ss_pred             HhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471         35 EHGLVD-EQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATL  111 (318)
Q Consensus        35 ~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~L  111 (318)
                      +..+++ +...-|..|+.-|-.+..-+..-+ | +.+-.|+..+++.|.| .+..+|..|++.++.+... .|..+    
T Consensus       292 l~~~~g~e~a~~~k~alsel~~m~~e~sfsv-Weq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~-Q~~~l----  365 (516)
T KOG2956|consen  292 LKEISGSERASERKEALSELPKMLCEGSFSV-WEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTN-QPARL----  365 (516)
T ss_pred             HHhccCccchhHHHHHHHHHHHHHHccchhH-HHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh-chHhh----
Confidence            333444 355668888775544433222222 5 4566788888999999 6778999999999887752 22211    


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH-ccccccchhhhHHHHHHH
Q psy10471        112 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDA  190 (318)
Q Consensus       112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l-g~~~~~yl~~iiP~l~~~  190 (318)
                          .+       .+-.||..             ++..-+|...++-+.+.++......++ +..|   +..+.|.++. 
T Consensus       366 ----~D-------stE~ai~K-------------~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~---I~~i~~~Ilt-  417 (516)
T KOG2956|consen  366 ----FD-------STEIAICK-------------VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC---IVNISPLILT-  417 (516)
T ss_pred             ----hc-------hHHHHHHH-------------HHHHHhCCchhHHHHHHHHHHHHHHhhCchhH---HHHHhhHHhc-
Confidence                11       01111111             334445555555555555544444433 3222   2334455554 


Q ss_pred             HhcCCHHHHHHHHHHHHHHhhhhcCCCchh---HHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHH
Q psy10471        191 LMDRDLVHRQTACATIKHMALGVYGFGCED---ALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQG  267 (318)
Q Consensus       191 l~~~~~~~R~~a~~~i~~la~~~~~~~~~~---~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~  267 (318)
                         .|...-..+...+..+.+.+   ..|+   .+..+.|-+++.-...+..||++++.++-+|...+|.+.|.||+-+.
T Consensus       418 ---~D~~~~~~~iKm~Tkl~e~l---~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L  491 (516)
T KOG2956|consen  418 ---ADEPRAVAVIKMLTKLFERL---SAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL  491 (516)
T ss_pred             ---CcchHHHHHHHHHHHHHhhc---CHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence               33222233344455554444   2332   22333333333333467899999999999999999999999998765

>KOG0212|consensus

Probab=97.72  E-value=0.0043  Score=61.06  Aligned_cols=208  Identities=12%  Similarity=0.108  Sum_probs=148.2

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHh---hCCCCCChhhHHHHHHHHHHHh
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIAD---RGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~---~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      -|...++-|.-|-.+-+-.|..|++++++-+...|.|+++.||..+=.+++++-.   +.+..++..+..++   +...+
T Consensus       183 tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~v---lv~~l  259 (675)
T KOG0212|consen  183 TRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINV---LVPHL  259 (675)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhh---ccccc
Confidence            4566666666666655667999999999999999999999999999999998653   34444444444444   55788


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccch-hhHHHH---HHHHHHHH-hhc-C---cc-cchH
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQER-QNRVCT---TVAIAIVA-ETC-S---PF-TVLP  144 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~~-~~R~~~---~~ai~~i~-~~~-~---p~-~vip  144 (318)
                      .++++.++.-|+.-+-...+.-|+.      .++..+++.+-+.+. ..+.+.   -.-++.+. +.. +   -+ .++.
T Consensus       260 ~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~  339 (675)
T KOG0212|consen  260 QSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIE  339 (675)
T ss_pred             cCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHH
Confidence            8888889988888887777643432      344455555543333 222221   11122221 111 1   12 5666


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       145 ~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      .+.+.+.+...+.+-++++=+..++...+...-.+.+.+-+.+...+.|++..+-..+..++++++..-+
T Consensus       340 vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  340 VLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence            7777778888888999999999999998888878889999999999999999888888888888776654

>KOG4653|consensus

Probab=97.69  E-value=0.0016  Score=66.72  Aligned_cols=182  Identities=17%  Similarity=0.164  Sum_probs=141.6

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHhh------hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471         73 CFELLELLKAHKKAIRRATVNTFGYIAKA------IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL  146 (318)
Q Consensus        73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~------igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L  146 (318)
                      +...+.-+.|+...+|..++..+..+.+.      +-++.++...+++|++++.=++..+..++..+++. +|-.++|-+
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-y~e~il~dL  807 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-YPEDILPDL  807 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-cchhhHHHH
Confidence            44445566777888999999999998873      34568899999999988865666677777777777 688999988


Q ss_pred             HHHhcCC----cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch---
Q psy10471        147 MNEYRVP----ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE---  219 (318)
Q Consensus       147 ~~~~~d~----~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~---  219 (318)
                      ...|...    .++.+--|-+++..+...+|+.+..|...++-.+..-++++|..+|..+...++.+.....+.+.+   
T Consensus       808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~  887 (982)
T KOG4653|consen  808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH  887 (982)
T ss_pred             HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH
Confidence            8877432    234445577999999999999999999999999999999888899988888888887777544333   


Q ss_pred             hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh
Q psy10471        220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV  258 (318)
Q Consensus       220 ~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~  258 (318)
                      +.+..+++....   |.+..+|.+++..+..+-...|.+
T Consensus       888 ev~~~Il~l~~~---d~s~~vRRaAv~li~~lL~~tg~d  923 (982)
T KOG4653|consen  888 EVLQLILSLETT---DGSVLVRRAAVHLLAELLNGTGED  923 (982)
T ss_pred             HHHHHHHHHHcc---CCchhhHHHHHHHHHHHHhccchh
Confidence            444445555433   578899999999999999999854

>KOG2062|consensus

Probab=97.65  E-value=0.0008  Score=67.89  Aligned_cols=154  Identities=18%  Similarity=0.149  Sum_probs=104.0

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH-hhhchHHHHHHHHHHHHHHHhhhCHHHHHHH
Q psy10471         32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL-LKAHKKAIRRATVNTFGYIAKAIGPHDVLAT  110 (318)
Q Consensus        32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~-L~d~~~~vR~~av~~lg~la~~igp~~~l~~  110 (318)
                      +++.++++|.+|..|+.++-+++--=.++|..-       .+..||.. .+|.++.|||+|+-++|-+.- =+|. ..+.
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk-------air~lLh~aVsD~nDDVrRaAVialGFVl~-~dp~-~~~s  592 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTGNNK-------AIRRLLHVAVSDVNDDVRRAAVIALGFVLF-RDPE-QLPS  592 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccCchh-------hHHHhhcccccccchHHHHHHHHHheeeEe-cChh-hchH
Confidence            456677899999999999999986444555432       33334444 488899999999999998772 3454 4445


Q ss_pred             HHHhhcccch-hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHH
Q psy10471        111 LLNNLKVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED  189 (318)
Q Consensus       111 Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~  189 (318)
                      .+..|...-. ++|+.++.|+|+-+-.-|-...+.-|--...|+..-||.+++=++..|.--..+...|-...+.-.+.+
T Consensus       593 ~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~k  672 (929)
T KOG2062|consen  593 TVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEK  672 (929)
T ss_pred             HHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence            5555543323 799999999998654434334455455555799999999988888877655454444555555555666


Q ss_pred             HHhcC
Q psy10471        190 ALMDR  194 (318)
Q Consensus       190 ~l~~~  194 (318)
                      ++.+.
T Consensus       673 vI~dK  677 (929)
T KOG2062|consen  673 VINDK  677 (929)
T ss_pred             Hhhhh
Confidence            66433

>KOG1059|consensus

Probab=97.64  E-value=0.0038  Score=63.04  Aligned_cols=207  Identities=13%  Similarity=0.149  Sum_probs=126.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH---
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH---  105 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~---  105 (318)
                      .|.+.+.|.|++|+|..||..-+-.+|...+ +|+   .+.|+++.|+   .+ .+-|+-.-.++-||.+.. +.|-   
T Consensus       183 FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---~LAP~ffkll---ttSsNNWmLIKiiKLF~aLtp-lEPRLgK  255 (877)
T KOG1059|consen  183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---QLAPLFYKLL---VTSSNNWVLIKLLKLFAALTP-LEPRLGK  255 (877)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---cccHHHHHHH---hccCCCeehHHHHHHHhhccc-cCchhhh
Confidence            3446788999999999999999999998776 444   6778888555   66 678888888999998764 4443   


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHH-HHh---hcCc--c---cchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccc
Q psy10471        106 DVLATLLNNLKVQERQNRVCTTVAIAI-VAE---TCSP--F---TVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEM  175 (318)
Q Consensus       106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~-i~~---~~~p--~---~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~  175 (318)
                      .+++.|.+..+...-  -...+.++.+ ++-   .+.|  +   ++.-.=++.+ .|.+++.+=--+-|++.+.++... 
T Consensus       256 KLieplt~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~-  332 (877)
T KOG1059|consen  256 KLIEPITELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK-  332 (877)
T ss_pred             hhhhHHHHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH-
Confidence            455555554442110  0112223321 111   1111  1   1222222333 567788886677777877776332 


Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471        176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL  255 (318)
Q Consensus       176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al  255 (318)
                         .+..---.+.+++.|.|.++|-.|.+++..++..=   .--+.+..++.++...   +..+.|..++..|=.||.+=
T Consensus       333 ---~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskk---Nl~eIVk~LM~~~~~a---e~t~yrdell~~II~iCS~s  403 (877)
T KOG1059|consen  333 ---AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKK---NLMEIVKTLMKHVEKA---EGTNYRDELLTRIISICSQS  403 (877)
T ss_pred             ---HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhhhh
Confidence               22333355788889999999999999997775432   1224445566665333   33467776666666666554


Q ss_pred             C
Q psy10471        256 G  256 (318)
Q Consensus       256 G  256 (318)
                      .
T Consensus       404 n  404 (877)
T KOG1059|consen  404 N  404 (877)
T ss_pred             h
Confidence            4

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.59  E-value=0.027  Score=52.69  Aligned_cols=183  Identities=16%  Similarity=0.176  Sum_probs=128.9

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH----
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRG--PEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP----  104 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~--~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp----  104 (318)
                      +.-.+..+.|.+...|.+++..+-++...-  ++++ ......++..+++.+|..+..-+..|.+.++-++=.+|+    
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v-~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFV-EDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            445667778888999999999999887532  2333 355667777778888775445567788888888877663    


Q ss_pred             H----HHHHHHHHhhcccch--hhHHHHHHHHHHHHhhcCc--c---cchHHHHHHhc------CC---------cchHH
Q psy10471        105 H----DVLATLLNNLKVQER--QNRVCTTVAIAIVAETCSP--F---TVLPALMNEYR------VP---------ELNVQ  158 (318)
Q Consensus       105 ~----~~l~~Ll~~Lk~~~~--~~R~~~~~ai~~i~~~~~p--~---~vip~L~~~~~------d~---------~~~v~  158 (318)
                      .    .+.+.|.+.+++.+.  ..|...+.++++++.-|+.  .   ..|..+-.+|.      +.         +..++
T Consensus       124 ~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~  203 (309)
T PF05004_consen  124 EEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALV  203 (309)
T ss_pred             HHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHH
Confidence            1    455666667776654  5777778888876544332  1   12233322221      11         24578


Q ss_pred             HHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        159 NGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      .+++++-+.+.-.+.. .+..++...+|.|...+...+..+|.+|+..|+-+-+...
T Consensus       204 ~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  204 AAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            8999999998877765 3556778889999999999999999999999988877664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=97.53  E-value=0.00055  Score=53.53  Aligned_cols=111  Identities=19%  Similarity=0.058  Sum_probs=82.3

Q ss_pred             cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch
Q psy10471        141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE  219 (318)
Q Consensus       141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~  219 (318)
                      .++|.+...+++.+.+++...+.++..++.........++. .++|.+.+++.+.++.++..++.+++.++.... ...+
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~   85 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKL   85 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHH
Confidence            47788888888888889999999999988753223333444 799999999999999999999999999976542 1111


Q ss_pred             hHHHH-HHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        220 DALTH-LLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       220 ~~i~h-ll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      ....+ +++.+...+.+.+.+++..++.++..++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            11211 4566666666678899999998888775

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1248|consensus

Probab=97.47  E-value=0.069  Score=56.92  Aligned_cols=258  Identities=13%  Similarity=0.193  Sum_probs=152.5

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~-~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      ..+..++.+.....+.-.-++..+. .+.|.. +..++++|.=+-..|+.+++. .+..........|...|.+-+++..
T Consensus       632 ~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~  710 (1176)
T KOG1248|consen  632 KTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS  710 (1176)
T ss_pred             HHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence            3344555555544444444555555 333433 445799999999999999987 1111102444445555666667766


Q ss_pred             HHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHH
Q psy10471         85 KAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVL  162 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl  162 (318)
                      ...|..+++++-.|-+..+-+  ++++.++..                               .+-.+++.+...++...
T Consensus       711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E-------------------------------vIL~~Ke~n~~aR~~Af  759 (1176)
T KOG1248|consen  711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE-------------------------------VILSLKEVNVKARRNAF  759 (1176)
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------------------------------HHHhcccccHHHHhhHH
Confidence            778999999998888876632  122222111                               11122444444445555


Q ss_pred             HHHHHHH--HH-Hcccc---ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC
Q psy10471        163 KALSFLF--EY-IGEMG---KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET  236 (318)
Q Consensus       163 ~al~~i~--~~-lg~~~---~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~  236 (318)
                      +++-++.  .. +...-   ..-++.+++.+..-+......++..-+-++.++..--+....++.+..+++.+--.|...
T Consensus       760 ~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~  839 (1176)
T KOG1248|consen  760 ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN  839 (1176)
T ss_pred             HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence            5555554  21 11111   113344445544444444455554446666676666555556778888988888888889


Q ss_pred             ChHHHHHHHHHHHHHHHHcChhhHHHhH---HHHh---ccccc-c----chHHHHHHHHHhhccccccccccCC
Q psy10471        237 SPHLVQAFMDAVEGLRVALGPVRILQYV---LQGL---FHPAR-K----VRDVYWKIYNSLYIGGQDALISAYP  299 (318)
Q Consensus       237 ~~~vr~~ii~~i~~i~~alG~~~~~~~v---l~~l---~~~a~-~----~r~~~w~i~~~~~~~~~~~~~p~~p  299 (318)
                      +++++..++..+...+..+...-+.||+   +|.+   .|+.+ +    +|-.+-+++....   .+++-+|+|
T Consensus       840 sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg---~~eLe~~~p  910 (1176)
T KOG1248|consen  840 SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG---AEELESFLP  910 (1176)
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC---HHHHHhhCH
Confidence            9999999999999999999887666665   4544   45643 3    4444444444433   247777877

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.42  E-value=0.051  Score=49.63  Aligned_cols=219  Identities=12%  Similarity=0.103  Sum_probs=125.4

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh--hCHH---H
Q psy10471         33 IIEHGLVDEQQKVQENCIDLVGRIADRGPE-YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA--IGPH---D  106 (318)
Q Consensus        33 ~l~~~l~d~~~~vR~aa~~~LG~la~~~~~-~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~--igp~---~  106 (318)
                      .+.+.|.++++.+|.-|+..|+.+.+..+. ..+..+..-++.=..+.+.| ...++.+ ++++..+.+.  .++.   .
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~~-l~gl~~L~~~~~~~~~~~~~   80 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQPA-LKGLLALVKMKNFSPESAVK   80 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHHH-HHHHHHHHhCcCCChhhHHH
Confidence            456788999999999999999999987773 44445554444445566654 3334444 7777776632  2232   4


Q ss_pred             HHHHHHHhhcccch--hhHHHHHHHHHHHHhhcC------cccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccccc
Q psy10471        107 VLATLLNNLKVQER--QNRVCTTVAIAIVAETCS------PFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEMGK  177 (318)
Q Consensus       107 ~l~~Ll~~Lk~~~~--~~R~~~~~ai~~i~~~~~------p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~~~~  177 (318)
                      ++..+......++.  +.|..+.+-+..+.++..      ....+..+++....+ +|.---.+++.+..+.+...  . 
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~-  157 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--I-  157 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--c-
Confidence            56666666555554  578888776655443321      123444444444222 22222222222222222211  0 


Q ss_pred             cchhhhHHHHHHHH--------h--cCCH------HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHH
Q psy10471        178 DYIYAVTPLLEDAL--------M--DRDL------VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLV  241 (318)
Q Consensus       178 ~yl~~iiP~l~~~l--------~--~~~~------~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr  241 (318)
                         .....-+.+++        +  ..|+      ..+..+...+...-         .--.+..|.+++++..+++.++
T Consensus       158 ---~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~---------~fa~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 ---SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP---------LFAPFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             ---chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH---------hhHHHHHHHHHHHHcCCCcHHH
Confidence               11222222222        1  1121      33333333332211         1225677888888888899999


Q ss_pred             HHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471        242 QAFMDAVEGLRVALGPVRILQYVLQGL  268 (318)
Q Consensus       242 ~~ii~~i~~i~~alG~~~~~~~vl~~l  268 (318)
                      ..++.++...+...|.+.+.||+.+..
T Consensus       226 ~D~L~tL~~c~~~y~~~~~~~~~~~iw  252 (262)
T PF14500_consen  226 LDSLQTLKACIENYGADSLSPHWSTIW  252 (262)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence            999999999999999999999876543

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=97.38  E-value=0.0026  Score=54.64  Aligned_cols=119  Identities=18%  Similarity=0.128  Sum_probs=84.7

Q ss_pred             cchHHHHHHhcCCcchHHHHHHHHHHHHHHH-HccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch
Q psy10471        141 TVLPALMNEYRVPELNVQNGVLKALSFLFEY-IGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE  219 (318)
Q Consensus       141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~-lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~  219 (318)
                      ..+|.+..-++.-+.--+-.+.+.+..+.+. -+.+..|.+|++++.+.+++.++++.+...+..++..++......| +
T Consensus        38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG-~  116 (183)
T PF10274_consen   38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG-E  116 (183)
T ss_pred             hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh-H
Confidence            4556666666554444445566667777776 4667889999999999999999999999999999999966655555 3


Q ss_pred             hHHHHHHHhhhhccc---------------CCChHHHHHHHHHHHHHHHHcChhhHH
Q psy10471        220 DALTHLLNYVWPNIF---------------ETSPHLVQAFMDAVEGLRVALGPVRIL  261 (318)
Q Consensus       220 ~~i~hll~~l~~~i~---------------d~~~~vr~~ii~~i~~i~~alG~~~~~  261 (318)
                      ....|+... +|-+.               .....++..|.++++.+-..-|+|.|.
T Consensus       117 aLvPyyrqL-Lp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~  172 (183)
T PF10274_consen  117 ALVPYYRQL-LPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFI  172 (183)
T ss_pred             HHHHHHHHH-HHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHH
Confidence            333332222 23222               134678888999999999999998754

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.38  E-value=0.018  Score=53.92  Aligned_cols=143  Identities=17%  Similarity=0.285  Sum_probs=99.6

Q ss_pred             hhhhHHHHHHHHHHHhc--cCcCCChHhHHHHHHhhcCCCC--HHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMG--CAILPHLKNLVEIIEHGLVDEQ--QKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLE   78 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g--~~~~P~l~~l~~~l~~~l~d~~--~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~   78 (318)
                      ++..+.++++-++..+|  ....-....+.|.+.+.++|.+  +.+|.+|+.+||.++-.++.... ..+.+..+..++.
T Consensus       102 E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~  181 (309)
T PF05004_consen  102 EQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFL  181 (309)
T ss_pred             HHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Confidence            45578899999999977  4566667788888888888854  67899999999999875554332 4544455553332


Q ss_pred             --Hhhh----------chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471         79 --LLKA----------HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL  146 (318)
Q Consensus        79 --~L~d----------~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L  146 (318)
                        ..+.          +...+..+|+.+-|-+...++++.+-..+    .                        ..+|.|
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~----~------------------------~~~~~l  233 (309)
T PF05004_consen  182 LSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL----E------------------------EALPAL  233 (309)
T ss_pred             HHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH----H------------------------HHHHHH
Confidence              2232          12468899999999999877775442111    0                        235667


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        147 MNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                      ...+..++.+||.++-++|..+|+....
T Consensus       234 ~~lL~s~d~~VRiAAGEaiAll~E~~~~  261 (309)
T PF05004_consen  234 SELLDSDDVDVRIAAGEAIALLYELARD  261 (309)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence            7777777888888888888888876543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG2933|consensus

Probab=97.29  E-value=0.0013  Score=60.35  Aligned_cols=113  Identities=14%  Similarity=0.215  Sum_probs=91.3

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      ++.-|+..|..|+.--.+.+.|-+.++...+..-+++..+.|-++|+.|++.+.+.-...+ -.+....+-.|+.--..+
T Consensus       104 ~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~~ld~lv~~Ll~ka~~d  182 (334)
T KOG2933|consen  104 DKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQELDDLVTQLLHKASQD  182 (334)
T ss_pred             HHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccc
Confidence            5677889999999988888999999999999999999999999999999999999766554 234444444333222225


Q ss_pred             hHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcc
Q psy10471         84 KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV  117 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~  117 (318)
                      +.-||..|-+++-.+.+...|..+++.|...++-
T Consensus       183 nrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~  216 (334)
T KOG2933|consen  183 NRFVREDAEKALVAMVNHVTPQKLLRKLIPILQH  216 (334)
T ss_pred             chHHHHHHHHHHHHHHhccChHHHHHHHHHHHhh
Confidence            6679999999999999999999999998888764

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=97.28  E-value=0.014  Score=53.08  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=123.4

Q ss_pred             hHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         29 NLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        29 ~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      +=++.++..|+. ++|..++.++.++|..|......--+.+. ..+..+.++|+++++++|..|++++..++....-...
T Consensus        12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~   90 (254)
T PF04826_consen   12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ   90 (254)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence            344666777765 67999999999999987633210001111 1222345777999999999999998877642111111


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHH-h-cCCcchHHHHHHHHHHHHHHHHccccccchhhhHH
Q psy10471        108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNE-Y-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTP  185 (318)
Q Consensus       108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~-~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP  185 (318)
                      +...                  +             +-.... . ...+.++|.+.++++..+.-  ......-+...+|
T Consensus        91 Ik~~------------------i-------------~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~~i~  137 (254)
T PF04826_consen   91 IKMY------------------I-------------PQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLANYIP  137 (254)
T ss_pred             HHHH------------------H-------------HHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHhhHH
Confidence            1000                  0             001111 1 12356778888888887742  2222222344677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc---hhHHHHHHHhhhhcccC--CChHHHHHHHHHHHHHHHHcChh--
Q psy10471        186 LLEDALMDRDLVHRQTACATIKHMALGVYGFGC---EDALTHLLNYVWPNIFE--TSPHLVQAFMDAVEGLRVALGPV--  258 (318)
Q Consensus       186 ~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~---~~~i~hll~~l~~~i~d--~~~~vr~~ii~~i~~i~~alG~~--  258 (318)
                      .+..++..++...|.++..++..++..-...+.   ......++     .+|+  ++.++...++.-.+.|...++.+  
T Consensus       138 ~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~-----~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~  212 (254)
T PF04826_consen  138 DLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFL-----SLFNSSESKENLLRVLTFFENINENIKKEAY  212 (254)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHH-----HHHccCCccHHHHHHHHHHHHHHHhhCcccc
Confidence            888899999999999999999888776531111   11112222     2333  46788999999999999888864  


Q ss_pred             ------hHHHhHHHHhccccc
Q psy10471        259 ------RILQYVLQGLFHPAR  273 (318)
Q Consensus       259 ------~~~~~vl~~l~~~a~  273 (318)
                            +-...++ .+||..+
T Consensus       213 ~~~~~~~~~~~L~-~~~~e~~  232 (254)
T PF04826_consen  213 VFVQDDFSEDSLF-SLFGESS  232 (254)
T ss_pred             eeccccCCchhHH-HHHccHH
Confidence                  2334444 6677665

>KOG1061|consensus

Probab=97.13  E-value=0.064  Score=54.81  Aligned_cols=84  Identities=19%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc--ChhhHHHhHHHHhccc-
Q psy10471        195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL--GPVRILQYVLQGLFHP-  271 (318)
Q Consensus       195 ~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al--G~~~~~~~vl~~l~~~-  271 (318)
                      ++.-|...++.++.=++.+.     +.. .++.-++.+.+|+..+|+...+.+.=++-..-  ..+.+.+.+++.--.+ 
T Consensus       437 epeak~amiWilg~y~~~i~-----~a~-elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~  510 (734)
T KOG1061|consen  437 EPEAKAALIWILGEYAERIE-----NAL-ELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADT  510 (734)
T ss_pred             ChHHHHHHHHHHhhhhhccC-----cHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccc
Confidence            47788888888877666553     333 34445579999998888887776665533333  3456777777777442 


Q ss_pred             -cccchH---HHHHHHH
Q psy10471        272 -ARKVRD---VYWKIYN  284 (318)
Q Consensus       272 -a~~~r~---~~w~i~~  284 (318)
                       ..-+||   .|||.+.
T Consensus       511 ~~~dlrDr~l~Y~RlLs  527 (734)
T KOG1061|consen  511 DNPDLRDRGLIYWRLLS  527 (734)
T ss_pred             cChhhhhhHHHHHHHhh
Confidence             234666   9999985

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.13  E-value=0.12  Score=51.77  Aligned_cols=229  Identities=13%  Similarity=0.146  Sum_probs=117.4

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      ++-+..++.++.|++..||..|++.|..+|...++++     .++...|.++|+++++.-+.++=+++..+-+ ++|...
T Consensus        58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v-----~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-~d~k~t  131 (556)
T PF05918_consen   58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV-----SKVADVLVQLLQTDDPVELDAVKNSLMSLLK-QDPKGT  131 (556)
T ss_dssp             HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H-----HHHHHHHHHHTT---HHHHHHHHHHHHHHHH-H-HHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH-----hHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-cCcHHH
Confidence            3567778899999999999999999999999766543     4566777888899888778888888888885 888888


Q ss_pred             HHHHHHhhc---ccchhhHHHHHHHHHHHHhhcCc--cc-----------chHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        108 LATLLNNLK---VQERQNRVCTTVAIAIVAETCSP--FT-----------VLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       108 l~~Ll~~Lk---~~~~~~R~~~~~ai~~i~~~~~p--~~-----------vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                      +..+++.+.   .++...|--+.   ..|.+...+  ..           ++.-.-..++|-.    ..=+..++.+.++
T Consensus       132 L~~lf~~i~~~~~~de~~Re~~l---kFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT----aeEF~l~m~lL~~  204 (556)
T PF05918_consen  132 LTGLFSQIESSKSGDEQVRERAL---KFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVT----AEEFELFMSLLKS  204 (556)
T ss_dssp             HHHHHHHHH---HS-HHHHHHHH---HHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccCchHHHHHHH---HHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHh
Confidence            888888776   34444444333   233322221  11           1112222333311    1112222333333


Q ss_pred             Hcc----ccccchhhhHHHHHHHH------hcCCHHHHHHHHHHHHHHhhh-hcCCCchhHHHHHHHhhhhcccCCChHH
Q psy10471        172 IGE----MGKDYIYAVTPLLEDAL------MDRDLVHRQTACATIKHMALG-VYGFGCEDALTHLLNYVWPNIFETSPHL  240 (318)
Q Consensus       172 lg~----~~~~yl~~iiP~l~~~l------~~~~~~~R~~a~~~i~~la~~-~~~~~~~~~i~hll~~l~~~i~d~~~~v  240 (318)
                      +..    ...+-..+++..+..-.      ...|+..-...+..+..-.+. ..+......+..+...++|.+.+-.++.
T Consensus       205 lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~  284 (556)
T PF05918_consen  205 LKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDR  284 (556)
T ss_dssp             SGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----H
T ss_pred             CccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHH
Confidence            332    11222234555555333      112222222222222222222 2222223445556666677776777788


Q ss_pred             HHHHHHHHHHHHHHcCh---hhHHHhHHHHhc
Q psy10471        241 VQAFMDAVEGLRVALGP---VRILQYVLQGLF  269 (318)
Q Consensus       241 r~~ii~~i~~i~~alG~---~~~~~~vl~~l~  269 (318)
                      +..++.++..++...|.   ..++|.+...+.
T Consensus       285 kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~  316 (556)
T PF05918_consen  285 KLDLLKLLAELSPFCGAQDARQLLPSIFQLLK  316 (556)
T ss_dssp             HHHHHHHHHHHHTT----THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Confidence            88889998888888886   446677777774

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4413|consensus

Probab=97.11  E-value=0.087  Score=49.18  Aligned_cols=230  Identities=18%  Similarity=0.221  Sum_probs=127.3

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-----HHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC-----FELLELLKAHKKAIRRATVNTFGYIAKA  101 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il-----~~Ll~~L~d~~~~vR~~av~~lg~la~~  101 (318)
                      .+++||.+...|..++..|+.-+++++|.+.+.+.... ..++.-++     ..+++.+-..+.+|-.+|++++..++-.
T Consensus        80 apnlmpdLQrGLiaddasVKiLackqigcilEdcDtna-VseillvvNaeilklildcIggeddeVAkAAiesikrialf  158 (524)
T KOG4413|consen   80 APNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNA-VSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             chhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhh-HHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc
Confidence            35788888888999999999999999999999877322 33333332     2233444457888999999999988742


Q ss_pred             hCH------HHHHH-HHHHhhcc--cch-hhHHHH-HHHHHH----HHhhcCcccchHHHHHHhcC-CcchHHHHHHHHH
Q psy10471        102 IGP------HDVLA-TLLNNLKV--QER-QNRVCT-TVAIAI----VAETCSPFTVLPALMNEYRV-PELNVQNGVLKAL  165 (318)
Q Consensus       102 igp------~~~l~-~Ll~~Lk~--~~~-~~R~~~-~~ai~~----i~~~~~p~~vip~L~~~~~d-~~~~v~~~vl~al  165 (318)
                      -+.      .++++ .-+.||..  .+- ++|+.- .+-|..    .+..|....++.-|..+++. .+.-++..+++.+
T Consensus       159 paaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElv  238 (524)
T KOG4413|consen  159 PAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV  238 (524)
T ss_pred             HHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence            111      11111 01112211  111 333322 111111    23456566788888888876 4445555566666


Q ss_pred             HHHHHHHccccccchhh--hHHHHHHHHhcC--CHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHHhhhhcccC----C
Q psy10471        166 SFLFEYIGEMGKDYIYA--VTPLLEDALMDR--DLVHRQTACATIKHMALGVYGFG-CEDALTHLLNYVWPNIFE----T  236 (318)
Q Consensus       166 ~~i~~~lg~~~~~yl~~--iiP~l~~~l~~~--~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~~l~~~i~d----~  236 (318)
                      ......-  ....|+++  ++-.+.+.+...  ++.-+-.+.-..+.+-....--+ .++.+..-++...++-|+    .
T Consensus       239 teLaete--HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn  316 (524)
T KOG4413|consen  239 TELAETE--HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN  316 (524)
T ss_pred             HHHHHHh--hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence            6555542  22567754  777777777533  33222212221111111100001 122333333333444444    5


Q ss_pred             ChHHHHHHHHHHHHHHHHc-Chhh
Q psy10471        237 SPHLVQAFMDAVEGLRVAL-GPVR  259 (318)
Q Consensus       237 ~~~vr~~ii~~i~~i~~al-G~~~  259 (318)
                      +++.+..++++++.+.... |.|.
T Consensus       317 DpdaieaAiDalGilGSnteGadl  340 (524)
T KOG4413|consen  317 DPDAIEAAIDALGILGSNTEGADL  340 (524)
T ss_pred             CchHHHHHHHHHHhccCCcchhHH
Confidence            7889999999999987766 4443

>KOG4224|consensus

Probab=97.10  E-value=0.0092  Score=56.17  Aligned_cols=179  Identities=20%  Similarity=0.198  Sum_probs=115.7

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSA--REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-  104 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~--~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-  104 (318)
                      +.++|.++.+.+|.+++|+-.|-.+||.+|+.+.+...+  .--.|.   ++++|+++.-..=.+.+-++-.|+  +-| 
T Consensus       250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~---lv~Llqs~~~plilasVaCIrnis--ihpl  324 (550)
T KOG4224|consen  250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPL---LVELLQSPMGPLILASVACIRNIS--IHPL  324 (550)
T ss_pred             cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchH---HHHHHhCcchhHHHHHHHHHhhcc--cccC
Confidence            468999999999999999999999999999876653321  112233   345556633222222222221122  222 


Q ss_pred             -------HHHHHHHHHhhcccch---h-hHHHHHHHHHHHHhhcC----cccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471        105 -------HDVLATLLNNLKVQER---Q-NRVCTTVAIAIVAETCS----PFTVLPALMNEYRVPELNVQNGVLKALSFLF  169 (318)
Q Consensus       105 -------~~~l~~Ll~~Lk~~~~---~-~R~~~~~ai~~i~~~~~----p~~vip~L~~~~~d~~~~v~~~vl~al~~i~  169 (318)
                             .-.+..|++.|+..+.   | +-+.|..-++...+.-.    ....+|-+...++|...++|..+-.++....
T Consensus       325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA  404 (550)
T ss_pred             cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence                   1235557888874443   2 22222222222222211    2368899999999999999988888877654


Q ss_pred             HHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        170 EYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       170 ~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                        +.+.++.|+  ..++|.+.-..-+.+..+|-+++.++..+++.+
T Consensus       405 --l~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  405 --LNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             --hccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence              456677777  358888888777888999999999998888776

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.08  E-value=0.19  Score=52.08  Aligned_cols=167  Identities=14%  Similarity=0.132  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA   86 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~   86 (318)
                      +.-++|.++..  |.+    ++.+.|-++....-.+..+++-.=.-+-++++.-+     .+-.-.+..+.+.++++++.
T Consensus        39 AmK~iIa~M~~--G~d----mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P-----~~~lLavNti~kDl~d~N~~  107 (757)
T COG5096          39 AMKKIIAQMSL--GED----MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP-----ELALLAVNTIQKDLQDPNEE  107 (757)
T ss_pred             HHHHHHHHHhc--CCC----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHhhccCCCHH
Confidence            44457888877  877    55666666554445667788877777777777433     22223344567778889999


Q ss_pred             HHHHHHHHHHHHHhh--hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHH---hhcCcc-cchHHHHHHhcCCcchHHHH
Q psy10471         87 IRRATVNTFGYIAKA--IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA---ETCSPF-TVLPALMNEYRVPELNVQNG  160 (318)
Q Consensus        87 vR~~av~~lg~la~~--igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~---~~~~p~-~vip~L~~~~~d~~~~v~~~  160 (318)
                      +|..|+++++.+...  +|  .+++.+.+.+.+..-.+|..++.|+..+.   ...++- ..+-.+.....|+++.+...
T Consensus       108 iR~~AlR~ls~l~~~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~n  185 (757)
T COG5096         108 IRGFALRTLSLLRVKELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIAN  185 (757)
T ss_pred             HHHHHHHHHHhcChHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHH
Confidence            999999999875431  11  24555666666666689999999998766   233343 36677777788999999988


Q ss_pred             HHHHHHHHHHHHccccccchhhhHHHHHH
Q psy10471        161 VLKALSFLFEYIGEMGKDYIYAVTPLLED  189 (318)
Q Consensus       161 vl~al~~i~~~lg~~~~~yl~~iiP~l~~  189 (318)
                      ++.++..+..-   ...+|...+.-.+.+
T Consensus       186 Al~sl~~i~~e---~a~~~~~~~~~~i~~  211 (757)
T COG5096         186 ALASLAEIDPE---LAHGYSLEVILRIPQ  211 (757)
T ss_pred             HHHHHHHhchh---hhhhHHHHHHHHhhh
Confidence            88888877654   345566544444443

>KOG1992|consensus

Probab=97.07  E-value=0.083  Score=54.44  Aligned_cols=261  Identities=13%  Similarity=0.132  Sum_probs=161.2

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHH-hhcCCC--CHHHHHHHHHHHHHHHhhCC----------CCCChhhHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIE-HGLVDE--QQKVQENCIDLVGRIADRGP----------EYVSAREWMR   71 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~-~~l~d~--~~~vR~aa~~~LG~la~~~~----------~~i~~~~~~~   71 (318)
                      |+.++.+++.|+..-..-+.+-+..-+..++ +.-+|+  +++....++-.+-.+|..+.          +-++..++..
T Consensus       379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~  458 (960)
T KOG1992|consen  379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA  458 (960)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence            8899999999999875567777777666654 355665  58888888888888886543          2222222221


Q ss_pred             HHHHHHHHhhh----chHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHH----------
Q psy10471         72 ICFELLELLKA----HKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVA----------  134 (318)
Q Consensus        72 il~~Ll~~L~d----~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----------  134 (318)
                      -  ..+..|.+    +.+-+|..+++=....-+.+||.   .+++.+.+.|+.+++.+|.-.|.++-.+-          
T Consensus       459 ~--~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~i  536 (960)
T KOG1992|consen  459 N--QILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKI  536 (960)
T ss_pred             H--HhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccc
Confidence            1  12222232    34557888888887777788887   46778888999888888888888885432          


Q ss_pred             ---hhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh-----cCCHHHHHHHHH
Q psy10471        135 ---ETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-----DRDLVHRQTACA  204 (318)
Q Consensus       135 ---~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-----~~~~~~R~~a~~  204 (318)
                         +.+.||  ..+..|...+..|+..=..-..||++.++..+.+..-+|.+.+++.+-..+.     -.++.+---...
T Consensus       537 f~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFE  616 (960)
T KOG1992|consen  537 FGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFE  616 (960)
T ss_pred             cchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence               223343  3334444455556553346788999999988877777888888887777663     234565556666


Q ss_pred             HHHHHhhhhcCCCc---hhHHHHHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcCh---hhHHHhHHHHh
Q psy10471        205 TIKHMALGVYGFGC---EDALTHLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGP---VRILQYVLQGL  268 (318)
Q Consensus       205 ~i~~la~~~~~~~~---~~~i~hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~---~~~~~~vl~~l  268 (318)
                      .++-+..+....+-   ......++|-+ +.++ ++-.+....+...+..+..+=+.   |.++|.+.+.+
T Consensus       617 si~~li~~t~~~~~~~vs~~e~aL~p~f-q~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL  686 (960)
T KOG1992|consen  617 SIGLLIRKTCKANPSAVSSLEEALFPVF-QTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL  686 (960)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence            77666666654441   11122233222 2222 23344555666666666655543   55666444443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=96.95  E-value=0.027  Score=51.21  Aligned_cols=142  Identities=13%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH--
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSARE-WMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH--  105 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~-~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~--  105 (318)
                      .++.+..++.+++|.+|..|++++..++.........+. ...+|..+   ... -+..++.++++.+..+.- ...+  
T Consensus        55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~---~s~~lns~~Q~agLrlL~nLtv-~~~~~~  130 (254)
T PF04826_consen   55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET---VSSPLNSEVQLAGLRLLTNLTV-TNDYHH  130 (254)
T ss_pred             CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHccCC-Ccchhh
Confidence            356688899999999999999999999876554332333 33344422   243 356688899999988752 2221  


Q ss_pred             ---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc------CcccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccc
Q psy10471        106 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------SPFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGEM  175 (318)
Q Consensus       106 ---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~------~p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~~  175 (318)
                         ..++.++..|...+...|.-+...+..+++.-      -..++++.|+..+... ..++...++.-+..+-+.++..
T Consensus       131 ~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  131 MLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             hHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence               34667788777666667777777776555321      1247899999999776 4566666777777776666553

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=96.95  E-value=0.16  Score=49.41  Aligned_cols=194  Identities=14%  Similarity=0.161  Sum_probs=128.3

Q ss_pred             hHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHH----HHHHHHHhh-cccchhhHHHHHHHHHHHH----hhc
Q psy10471         68 EWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHD----VLATLLNNL-KVQERQNRVCTTVAIAIVA----ETC  137 (318)
Q Consensus        68 ~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~----~l~~Ll~~L-k~~~~~~R~~~~~ai~~i~----~~~  137 (318)
                      +...++..+++.... .....|..+.+.++.+.++..+.+    +++.+...+ ..++...|......+.-++    ...
T Consensus       186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~  265 (415)
T PF12460_consen  186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG  265 (415)
T ss_pred             CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence            445566667776566 557799999999999999975543    344444444 1222234444444433222    334


Q ss_pred             Cc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--------cc----c-cchhhhHHHHHHHHhcCCHHHHHHH
Q psy10471        138 SP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--------MG----K-DYIYAVTPLLEDALMDRDLVHRQTA  202 (318)
Q Consensus       138 ~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--------~~----~-~yl~~iiP~l~~~l~~~~~~~R~~a  202 (318)
                      .|  ...+..|+..+.+  .++...+.+++.-++.-.+.        ..    + .++..++|.+.+..+..+...|..+
T Consensus       266 ~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~y  343 (415)
T PF12460_consen  266 HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNY  343 (415)
T ss_pred             CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHH
Confidence            45  3677788888887  44455666666655543111        11    2 2335689999999998888899999


Q ss_pred             HHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhH
Q psy10471        203 CATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYV  264 (318)
Q Consensus       203 ~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~v  264 (318)
                      ..++.++...+...=....+..++|.+++.+.-++++++.+.++++..+..-- ++.+.+|+
T Consensus       344 L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl  404 (415)
T PF12460_consen  344 LTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHL  404 (415)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHH
Confidence            99998888877533335677779999999998888899999999988887655 55555543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.88  E-value=0.06  Score=53.54  Aligned_cols=252  Identities=18%  Similarity=0.168  Sum_probs=140.1

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      .+.+++|.+-..++|.-.+|.-.+++++-.+++..   +....+.+.+..|-..|+.+....|..|++.+.+++- .-|+
T Consensus       261 ~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam-~~P~  336 (898)
T COG5240         261 ALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN---VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM-KYPQ  336 (898)
T ss_pred             HHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-hCCc
Confidence            34567777777888878999999999998888743   4456777888777778899888999999999999995 4554


Q ss_pred             HH------HHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------ccchHHHHHHhcCCc---------------chHH
Q psy10471        106 DV------LATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLPALMNEYRVPE---------------LNVQ  158 (318)
Q Consensus       106 ~~------l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~~vip~L~~~~~d~~---------------~~v~  158 (318)
                      .+      +..|++   +   ..|....-||..+-.++..      -..+|.++..+.|.=               +.-+
T Consensus       337 kv~vcN~evEsLIs---d---~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~  410 (898)
T COG5240         337 KVSVCNKEVESLIS---D---ENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK  410 (898)
T ss_pred             eeeecChhHHHHhh---c---ccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH
Confidence            11      111111   1   1122222222222222111      023333443333310               1122


Q ss_pred             HHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc----------CCCc--------h
Q psy10471        159 NGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY----------GFGC--------E  219 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~----------~~~~--------~  219 (318)
                      ..++.-+..+...-|+ +|+.|+-   -.+.+.++ .+|.-|+.+...++...+-|.          ..|.        .
T Consensus       411 ~s~l~FL~~~L~~eGg~eFK~~~V---daisd~~~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~  486 (898)
T COG5240         411 LSYLDFLGSSLLQEGGLEFKKYMV---DAISDAME-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPG  486 (898)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHH---HHHHHHHh-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcc
Confidence            3444444444433322 4444442   23333332 223334333333333222221          0121        2


Q ss_pred             hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh---ccccc-cchHHHHHHHHHhhcccccccc
Q psy10471        220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL---FHPAR-KVRDVYWKIYNSLYIGGQDALI  295 (318)
Q Consensus       220 ~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l---~~~a~-~~r~~~w~i~~~~~~~~~~~~~  295 (318)
                      ..+.|+.|+++ .   ++..+|..++.++...+....+-+..+.+.-.|   +.|+. .+||--.=.+.++-  ..|++.
T Consensus       487 ~yvrhIyNR~i-L---EN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~  560 (898)
T COG5240         487 KYVRHIYNRLI-L---ENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR--LSDACE  560 (898)
T ss_pred             hHHHHHHHHHH-H---hhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhhhh
Confidence            46777777763 1   678999999999999988887766666655555   44544 57775444444444  668888


Q ss_pred             cc
Q psy10471        296 SA  297 (318)
Q Consensus       296 p~  297 (318)
                      |.
T Consensus       561 pl  562 (898)
T COG5240         561 PL  562 (898)
T ss_pred             cc
Confidence            83

>KOG1967|consensus

Probab=96.87  E-value=0.0084  Score=62.06  Aligned_cols=126  Identities=13%  Similarity=0.170  Sum_probs=98.6

Q ss_pred             chhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          3 SDKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      ..||.=++++...-.-... -+.|..+.|+|++++.|.=+++.||-.++.++..+-.-.+..+ .+....++..++.+=+
T Consensus       882 ~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~-t~~~~Tlvp~lLsls~  960 (1030)
T KOG1967|consen  882 SQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ-TEHLSTLVPYLLSLSS  960 (1030)
T ss_pred             cchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc-hHHHhHHHHHHHhcCC
Confidence            3456555555544332222 5899999999999999999999999999999999998777765 5667777777887777


Q ss_pred             hch---HHHHHHHHHHHHHHHhhhCH-----H--HHHHHHHHhhcccchhhHHHHHHH
Q psy10471         82 AHK---KAIRRATVNTFGYIAKAIGP-----H--DVLATLLNNLKVQERQNRVCTTVA  129 (318)
Q Consensus        82 d~~---~~vR~~av~~lg~la~~igp-----~--~~l~~Ll~~Lk~~~~~~R~~~~~a  129 (318)
                      |++   ..||..|+++++.+.+...+     +  +++.+|.+.|.|+.|-+|.+.+++
T Consensus       961 ~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  961 DNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             CCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            733   57999999999999985553     2  688999999999888888877654

>KOG1991|consensus

Probab=96.81  E-value=0.38  Score=50.67  Aligned_cols=201  Identities=11%  Similarity=0.126  Sum_probs=119.4

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCCChHh----HHHHHHhhcCCCCHHHHHHHHHHHHHHHh-hCCCCCChhhHHHHHHHH
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIAD-RGPEYVSAREWMRICFEL   76 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~----l~~~l~~~l~d~~~~vR~aa~~~LG~la~-~~~~~i~~~~~~~il~~L   76 (318)
                      .++|.-|++++|.|+..+-. =.||-++    |++.+.|.++++.---|.-||+.+|++++ ...+   ..-+...+...
T Consensus       432 ~rqkdGAL~~vgsl~~~L~K-~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t  507 (1010)
T KOG1991|consen  432 PRQKDGALRMVGSLASILLK-KSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELT  507 (1010)
T ss_pred             hhhhhhHHHHHHHHHHHHcc-CCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHH
Confidence            36788999999999986632 1233232    45556788898777779999999999995 3333   33444455545


Q ss_pred             HHHhh-hchHHHHHHHHHHHHHHHhh-------hCHH--HHHHHHHHhhcccchhhHHHHHHHH-HHHHhhcCcc-----
Q psy10471         77 LELLK-AHKKAIRRATVNTFGYIAKA-------IGPH--DVLATLLNNLKVQERQNRVCTTVAI-AIVAETCSPF-----  140 (318)
Q Consensus        77 l~~L~-d~~~~vR~~av~~lg~la~~-------igp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai-~~i~~~~~p~-----  140 (318)
                      .+.|. |+.-.||.+|.-++-.+...       +.|+  .++..|+..-+.-+...=..+.+.| ...++...||     
T Consensus       508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~  587 (1010)
T KOG1991|consen  508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELC  587 (1010)
T ss_pred             HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            56667 66667887755555443332       2222  2344555544432322223445554 3455676775     


Q ss_pred             -cchHHHHHHhcC---Ccc-----hHH-HHHHHHHHHHHHHHccc--cccch-hhhHHHHHHHHhcCCHHHHHHHHHHH
Q psy10471        141 -TVLPALMNEYRV---PEL-----NVQ-NGVLKALSFLFEYIGEM--GKDYI-YAVTPLLEDALMDRDLVHRQTACATI  206 (318)
Q Consensus       141 -~vip~L~~~~~d---~~~-----~v~-~~vl~al~~i~~~lg~~--~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i  206 (318)
                       .+.-++.+.+.+   .+.     .+. -+++++++++..++...  .-.++ +.+.|.+..++++.-..+-+-+...+
T Consensus       588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~  666 (1010)
T KOG1991|consen  588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIV  666 (1010)
T ss_pred             HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             334455566653   111     122 57888999998888663  33444 56778888888666554444444443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.79  E-value=0.036  Score=46.97  Aligned_cols=137  Identities=17%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHH
Q psy10471         24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---AREWMRICFELLELLKA-HKKAIRRATVNTFGYIA   99 (318)
Q Consensus        24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la   99 (318)
                      ..-++.++..+..++++.++.-|..++..++..++.+++.+-   ...|.+.   ++.+|+. +.+.++..++.++..|-
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~---Ll~~L~~~~~~~~~~~ai~~L~~l~   96 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRA---LLSILEKPDPPSVLEAAIITLTRLF   96 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            446788888899999999999999999999999998754331   2455555   5566677 55668999999999988


Q ss_pred             hhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471        100 KAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK  177 (318)
Q Consensus       100 ~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~  177 (318)
                      ..++.+.-+             .|..           ..|.  .+++++++..++  ......++.++..+.+.....|.
T Consensus        97 ~~~~~~p~l-------------~Rei-----------~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r  150 (165)
T PF08167_consen   97 DLIRGKPTL-------------TREI-----------ATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR  150 (165)
T ss_pred             HHhcCCCch-------------HHHH-----------hhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc
Confidence            777654110             0111           1121  345556666655  45556778888888887777788


Q ss_pred             cchhhhHHHHHH
Q psy10471        178 DYIYAVTPLLED  189 (318)
Q Consensus       178 ~yl~~iiP~l~~  189 (318)
                      ||..++-..+..
T Consensus       151 p~~~ki~~~l~~  162 (165)
T PF08167_consen  151 PFANKIESALLS  162 (165)
T ss_pred             chHHHHHHHHHH
Confidence            887765444443

>KOG2032|consensus

Probab=96.78  E-value=0.23  Score=48.57  Aligned_cols=143  Identities=17%  Similarity=0.173  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHH-
Q psy10471         70 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMN-  148 (318)
Q Consensus        70 ~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~-  148 (318)
                      -.++..+.+-.+|++..+|+.|++.+|..+.. .|.++..+            ...                ++.+++. 
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~-~P~kv~th------------~~~----------------~ldaii~g  307 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASG-APDKVRTH------------KTT----------------QLDAIIRG  307 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhcc-CcHHHHHh------------HHH----------------HHHHHHHH
Confidence            34555566777888889999999999999975 56544221            111                1222333 


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHH-ccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch---hHHH-
Q psy10471        149 EYRVPELNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE---DALT-  223 (318)
Q Consensus       149 ~~~d~~~~v~~~vl~al~~i~~~l-g~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~---~~i~-  223 (318)
                      .+.+.+.+|+-.+++++.-+.+.. +....+|+-.+.=.+..++.+.+..+|-++..+.+.++....+.+++   +.+. 
T Consensus       308 L~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k  387 (533)
T KOG2032|consen  308 LYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK  387 (533)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh
Confidence            344445778877888888877665 44566788777778888899999999999999999999887655432   2233 


Q ss_pred             HHHHhhhhcccCCChHHHH
Q psy10471        224 HLLNYVWPNIFETSPHLVQ  242 (318)
Q Consensus       224 hll~~l~~~i~d~~~~vr~  242 (318)
                      .+-++ +..|.|++|.+-.
T Consensus       388 ~~~~l-llhl~d~~p~va~  405 (533)
T KOG2032|consen  388 RLAPL-LLHLQDPNPYVAR  405 (533)
T ss_pred             ccccc-eeeeCCCChHHHH
Confidence            33333 4667777775544

>KOG2137|consensus

Probab=96.78  E-value=0.034  Score=56.45  Aligned_cols=156  Identities=19%  Similarity=0.242  Sum_probs=111.9

Q ss_pred             HHHHHHHHhhccc-chhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch
Q psy10471        106 DVLATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI  180 (318)
Q Consensus       106 ~~l~~Ll~~Lk~~-~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl  180 (318)
                      .++++|...++.. ..+.+.+..+-...|.++-.+    ..++|-|...++|.+..+|..+++.+..+++.++   .+++
T Consensus       349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~v  425 (700)
T KOG2137|consen  349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFV  425 (700)
T ss_pred             hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHH
Confidence            3566666666632 235666666555555555443    3799999999999999999999999999999988   4566


Q ss_pred             -hhhHHHHHHHH-hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC--
Q psy10471        181 -YAVTPLLEDAL-MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG--  256 (318)
Q Consensus       181 -~~iiP~l~~~l-~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG--  256 (318)
                       ..|+|.+.++. ++.+..+|.+++.+++.++..+   +...++..+++. ..++.-.+|.+....+...+.+..-.-  
T Consensus       426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l---D~~~v~d~~lpi-~~~~~~~dp~iv~~~~~i~~~l~~~~~~g  501 (700)
T KOG2137|consen  426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL---DKAAVLDELLPI-LKCIKTRDPAIVMGFLRIYEALALIIYSG  501 (700)
T ss_pred             HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---HHHHhHHHHHHH-HHHhcCCCcHHHHHHHHHHHHHHhhcccc
Confidence             45899998875 4667899999999999888555   566666666666 578777778777777777776665543  


Q ss_pred             hhhHHHhHHHHh
Q psy10471        257 PVRILQYVLQGL  268 (318)
Q Consensus       257 ~~~~~~~vl~~l  268 (318)
                      .+.+...|+|.+
T Consensus       502 ~ev~~~~VlPll  513 (700)
T KOG2137|consen  502 VEVMAENVLPLL  513 (700)
T ss_pred             eeeehhhhhhhh
Confidence            355555555555

>KOG1077|consensus

Probab=96.76  E-value=0.35  Score=49.29  Aligned_cols=253  Identities=16%  Similarity=0.151  Sum_probs=149.5

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      ++--...-++..+|.++|.+|.--...=+|   .+|..  ..+-||..|+.+|=.+-..+++.+.+.+|..=+.   .+|
T Consensus       123 rn~~fv~LAL~~I~niG~re~~ea~~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv---~LL  196 (938)
T KOG1077|consen  123 RNPTFVCLALHCIANIGSREMAEAFADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIV---HLL  196 (938)
T ss_pred             CCcHHHHHHHHHHHhhccHhHHHHhhhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHH---HHh
Confidence            344444556677777777654332222222   22333  3477899999999999999999887778877555   444


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhcc-----cchhh-----HHHHHHHHHHHHhhcCc-----
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKV-----QERQN-----RVCTTVAIAIVAETCSP-----  139 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~-----~~~~~-----R~~~~~ai~~i~~~~~p-----  139 (318)
                      .|+.-.|--++..-+-.|++...++      ..+..|.++-..     +++..     =..-+..+..  ..++|     
T Consensus       197 ~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl--Lq~~p~~~D~  274 (938)
T KOG1077|consen  197 DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL--LQIYPTPEDP  274 (938)
T ss_pred             CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH--HHhCCCCCCc
Confidence            7765555556666666677666553      112222222211     11100     0001111110  11122     


Q ss_pred             ------ccchHHHHHHhcCCc--chHH------HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHH
Q psy10471        140 ------FTVLPALMNEYRVPE--LNVQ------NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT  205 (318)
Q Consensus       140 ------~~vip~L~~~~~d~~--~~v~------~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~  205 (318)
                            +.++..+++..++|.  .+++      ...+++|..++..  +....-+..-+-.+..++.++..++|=.+.+.
T Consensus       275 ~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~--D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEs  352 (938)
T KOG1077|consen  275 STRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHL--DSEPELLSRAVNQLGQFLSHRETNIRYLALES  352 (938)
T ss_pred             hHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence                  134444555555442  2222      3345666665542  12234445667788889999999999999999


Q ss_pred             HHHHhhhhcCCCchhHHHHHHHhhhhccc-CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471        206 IKHMALGVYGFGCEDALTHLLNYVWPNIF-ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL  268 (318)
Q Consensus       206 i~~la~~~~~~~~~~~i~hll~~l~~~i~-d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l  268 (318)
                      ++.++..-   ...+.+.|-...++..++ |.+-++|+.+++.+-.+|..=.......-+++=+
T Consensus       353 m~~L~ss~---~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL  413 (938)
T KOG1077|consen  353 MCKLASSE---FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL  413 (938)
T ss_pred             HHHHHhcc---chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence            99987761   334666666777778888 6788999999999999998877755444444444

>KOG1820|consensus

Probab=96.75  E-value=0.13  Score=54.01  Aligned_cols=175  Identities=15%  Similarity=0.115  Sum_probs=125.6

Q ss_pred             hhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          4 DKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      +|--|++-+...-..-+ ....+|...+...+.-.++|.+-.|-..|+..|+.+|...+.-. ...-..++..+++-+++
T Consensus       269 ~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~p~lld~lke  347 (815)
T KOG1820|consen  269 DRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVFPSLLDRLKE  347 (815)
T ss_pred             HHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhcchHHHHhhh
Confidence            44455555544444333 45666777777767778899999999999999999999777532 23334455567788899


Q ss_pred             chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVL  162 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl  162 (318)
                      .+..+|.++++++-.+++...-......                                   .+..++...+..+....
T Consensus       348 kk~~l~d~l~~~~d~~~ns~~l~~~~~~-----------------------------------I~e~lk~knp~~k~~~~  392 (815)
T KOG1820|consen  348 KKSELRDALLKALDAILNSTPLSKMSEA-----------------------------------ILEALKGKNPQIKGECL  392 (815)
T ss_pred             ccHHHHHHHHHHHHHHHhcccHHHHHHH-----------------------------------HHHHhcCCChhhHHHHH
Confidence            8888999888887666652222223333                                   44445555677777778


Q ss_pred             HHHHHHHHHHccc--cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        163 KALSFLFEYIGEM--GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       163 ~al~~i~~~lg~~--~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      ..+...++.+|..  ++.-+..++|.+.....|++..+|..+..+++.+....+
T Consensus       393 ~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G  446 (815)
T KOG1820|consen  393 LLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG  446 (815)
T ss_pred             HHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence            8888888888853  445558899999999999999999999999988866653

>KOG1243|consensus

Probab=96.73  E-value=0.0034  Score=63.22  Aligned_cols=186  Identities=13%  Similarity=0.149  Sum_probs=135.1

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI  102 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i  102 (318)
                      -.+|-..++|.++++++-++-.+|-.=+.-+-++.+...+.+   --.+|+..+..-+.|.++.+|..+++++..++..+
T Consensus       324 ~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~---~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL  400 (690)
T KOG1243|consen  324 EEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI---LNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL  400 (690)
T ss_pred             ccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh---hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence            455778899999999999888899888877777776443221   22345555667779999999999999999999999


Q ss_pred             CHHHHHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        103 GPHDVLATLLNNLK----VQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       103 gp~~~l~~Ll~~Lk----~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                      ++..+=..+++.|.    |++-..|+-+++.++.|+....|    -....++.+.++||-..-+.+.+.++....+....
T Consensus       401 ~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~  480 (690)
T KOG1243|consen  401 SKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ  480 (690)
T ss_pred             chhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch
Confidence            99855555666664    34446899999999888765544    25666788889999888887777776655544322


Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                        ..--.+|+|.+.-...+.+..+|.++-.++..--++.
T Consensus       481 --~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  481 --SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL  517 (690)
T ss_pred             --hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence              1112467788777777889999999888885543333

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.68  E-value=0.069  Score=53.23  Aligned_cols=171  Identities=17%  Similarity=0.167  Sum_probs=107.1

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HH-
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG-PH-  105 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~-  105 (318)
                      .+.+..++..+....-.||.-++..|..+.+..++.- -.-+-.++..|.+.+=|..+.||++|++++...-+..+ |. 
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence            3444445555555678899999999999999766521 11222344456666667888999999999998876554 33 


Q ss_pred             HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471        106 DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT  184 (318)
Q Consensus       106 ~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii  184 (318)
                      .+.+.|+..++ +++-.+|+.+..-|..      ...-.|..+..-||-+...++.+-   ..+.+.+|+.+-.-+..=+
T Consensus       169 ~~~n~l~~~vqnDPS~EVRr~allni~v------dnsT~p~IlERarDv~~anRr~vY---~r~Lp~iGd~~~lsi~kri  239 (885)
T COG5218         169 RIVNLLKDIVQNDPSDEVRRLALLNISV------DNSTYPCILERARDVSGANRRMVY---ERCLPRIGDLKSLSIDKRI  239 (885)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHeee------CCCcchhHHHHhhhhhHHHHHHHH---HHHhhhhcchhhcccccee
Confidence            34555555555 5555677776543311      113345566666665544444332   2556666664422233322


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q psy10471        185 PLLEDALMDRDLVHRQTACATIKH  208 (318)
Q Consensus       185 P~l~~~l~~~~~~~R~~a~~~i~~  208 (318)
                      -.+++-+.+++.++|.++.+++.+
T Consensus       240 ~l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         240 LLMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             hhhhhcchhhhhhHHHHHHHHHHH
Confidence            378888899999999999888865

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.67  E-value=0.019  Score=49.33  Aligned_cols=135  Identities=19%  Similarity=0.185  Sum_probs=82.4

Q ss_pred             CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccc
Q psy10471         63 YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTV  142 (318)
Q Consensus        63 ~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~v  142 (318)
                      .++...|+|+++   +=|...+..-|..|..++-.+.+.-|+..+++.+                            -++
T Consensus        33 ~Ldy~~~Lpif~---dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl----------------------------PqL   81 (183)
T PF10274_consen   33 KLDYHHYLPIFF---DGLRETEHPYRFLARQGIKDLLERGGGEKILPVL----------------------------PQL   81 (183)
T ss_pred             hcchhhHHHHHH---hhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH----------------------------HHH
Confidence            344567777777   4446644446777777777776654444433221                            034


Q ss_pred             hHHHHHHhcCCcchHHHHHHHHHHHH---HHHHccccccchhhhHHHHHHHHhcC----C---HHHHHHHHHHHHHHhhh
Q psy10471        143 LPALMNEYRVPELNVQNGVLKALSFL---FEYIGEMGKDYIYAVTPLLEDALMDR----D---LVHRQTACATIKHMALG  212 (318)
Q Consensus       143 ip~L~~~~~d~~~~v~~~vl~al~~i---~~~lg~~~~~yl~~iiP~l~~~l~~~----~---~~~R~~a~~~i~~la~~  212 (318)
                      ++++-+.+.+.++++...+++++..+   .+.+|...+||+.+++|.+.-+.+.+    |   -..++...+.|...-+.
T Consensus        82 I~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~  161 (183)
T PF10274_consen   82 IIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLEL  161 (183)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHH
Confidence            45566677777888998899999888   77789999999999999988555322    1   12223333444333333


Q ss_pred             hcCCCchhHHHHHHHh
Q psy10471        213 VYGFGCEDALTHLLNY  228 (318)
Q Consensus       213 ~~~~~~~~~i~hll~~  228 (318)
                      +...|=++++..|-.+
T Consensus       162 lE~~GG~dA~~nIKy~  177 (183)
T PF10274_consen  162 LERNGGPDAFINIKYM  177 (183)
T ss_pred             HHHhcChhHHHHHHHh
Confidence            3333445566555433

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.67  E-value=0.027  Score=43.00  Aligned_cols=85  Identities=16%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL  108 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l  108 (318)
                      .....+.-++|+.+.+|--|+..|+++.+... .   ...+..++..++..|+|+.+-|=-.|+++++.++. .-|..++
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~---~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~-~~p~~vl   79 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEP---VIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD-RHPDEVL   79 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcc---hhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH-HChHHHH
Confidence            34556677889889999999999999998655 3   33455555556688899888899999999999997 6677788


Q ss_pred             HHHHHhhccc
Q psy10471        109 ATLLNNLKVQ  118 (318)
Q Consensus       109 ~~Ll~~Lk~~  118 (318)
                      +.|++...+.
T Consensus        80 ~~L~~~y~~~   89 (92)
T PF10363_consen   80 PILLDEYADP   89 (92)
T ss_pred             HHHHHHHhCc
Confidence            8887776543

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.65  E-value=0.03  Score=48.24  Aligned_cols=101  Identities=14%  Similarity=0.161  Sum_probs=66.2

Q ss_pred             hhhhHHHHHHHHHHHh-ccCcCCChHhHHHH------------HHhhcCCCCHHHHHHHHHHHHHHHhhCCC--------
Q psy10471          4 DKNLGIKIVQQIAILM-GCAILPHLKNLVEI------------IEHGLVDEQQKVQENCIDLVGRIADRGPE--------   62 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~-g~~~~P~l~~l~~~------------l~~~l~d~~~~vR~aa~~~LG~la~~~~~--------   62 (318)
                      -|..++.+++.++... +..+-.|-+.++|-            +..+++|++++||.+|+.++..+-++..+        
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            4889999999999983 34555555555543            46677999999999999999998776552        


Q ss_pred             ------CCCh-----hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHH
Q psy10471         63 ------YVSA-----REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        63 ------~i~~-----~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~  105 (318)
                            |.+.     .-+..+-..|+..|+. .+..+-...+++++.+.. ..||
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~-~tPY  135 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQ-ATPY  135 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHc-cCCh
Confidence                  2210     1222222334455555 455566677777777775 4455

>KOG1062|consensus

Probab=96.62  E-value=0.66  Score=47.93  Aligned_cols=90  Identities=13%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHH
Q psy10471        185 PLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQ  262 (318)
Q Consensus       185 P~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~  262 (318)
                      +.+.++++|.|..+|+.+..+.-.+.-.   ..-...++.++.|+ ..   .+++++..+...|..++...-|+.  +..
T Consensus       353 ~tIleCL~DpD~SIkrralELs~~lvn~---~Nv~~mv~eLl~fL-~~---~d~~~k~~~as~I~~laEkfaP~k~W~id  425 (866)
T KOG1062|consen  353 STILECLKDPDVSIKRRALELSYALVNE---SNVRVMVKELLEFL-ES---SDEDFKADIASKIAELAEKFAPDKRWHID  425 (866)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHH-Hh---ccHHHHHHHHHHHHHHHHhcCCcchhHHH
Confidence            5678888999999999999988666432   23445666677774 44   467899999999999999998876  777


Q ss_pred             hHHHHhccccccchHHHHH
Q psy10471        263 YVLQGLFHPARKVRDVYWK  281 (318)
Q Consensus       263 ~vl~~l~~~a~~~r~~~w~  281 (318)
                      ..+.++-+-...|++.-|.
T Consensus       426 tml~Vl~~aG~~V~~dv~~  444 (866)
T KOG1062|consen  426 TMLKVLKTAGDFVNDDVVN  444 (866)
T ss_pred             HHHHHHHhcccccchhhHH
Confidence            7777776555555554443

>KOG0567|consensus

Probab=96.61  E-value=0.12  Score=46.79  Aligned_cols=89  Identities=15%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC--cchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471        105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYIYA  182 (318)
Q Consensus       105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~--~~~v~~~vl~al~~i~~~lg~~~~~yl~~  182 (318)
                      .+.+.++...+.+++.-.|..++-.+|-+-.    -..+|.|...++|.  ++-||..+.+|+++|..          +.
T Consensus       186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s----~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~  251 (289)
T KOG0567|consen  186 EEAINALIDGLADDSALFRHEVAFVFGQLQS----PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------ED  251 (289)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhccc----hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HH
Confidence            3455666666665544444444443332211    25689999999875  46788888888887664          56


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471        183 VTPLLEDALMDRDLVHRQTACATIK  207 (318)
Q Consensus       183 iiP~l~~~l~~~~~~~R~~a~~~i~  207 (318)
                      -++.+...+.|.+..+|+....++.
T Consensus       252 ~~~vL~e~~~D~~~vv~esc~vald  276 (289)
T KOG0567|consen  252 CVEVLKEYLGDEERVVRESCEVALD  276 (289)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788889999999999988877763

>KOG2032|consensus

Probab=96.60  E-value=0.82  Score=44.86  Aligned_cols=148  Identities=14%  Similarity=0.119  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhccCc---CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-ch
Q psy10471          9 IKIVQQIAILMGCAI---LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HK   84 (318)
Q Consensus         9 l~~i~~La~~~g~~~---~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~   84 (318)
                      +..+.-+|++.+...   .|.+.+++..+.....|++..+|.-|+..||..++.++... ......++..++.-|-| .+
T Consensus       235 itd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~th~~~~ldaii~gL~D~~~  313 (533)
T KOG2032|consen  235 ITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-RTHKTTQLDAIIRGLYDDLN  313 (533)
T ss_pred             HHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-HHhHHHHHHHHHHHHhcCCc
Confidence            445666777777743   36888888889999999999999999999999999877544 34444455555555555 56


Q ss_pred             HHHHHHHHHHHHHHHhhhC-----HH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-c----c--cch---HHHH
Q psy10471         85 KAIRRATVNTFGYIAKAIG-----PH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-P----F--TVL---PALM  147 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~ig-----p~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-p----~--~vi---p~L~  147 (318)
                      ..|--++++++..+.+...     ++  .+-..+-+.+++++-+.|+.....++.++.-++ +    |  +|.   -+|.
T Consensus       314 ~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll  393 (533)
T KOG2032|consen  314 EEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL  393 (533)
T ss_pred             cHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence            7899999999977666543     33  333344445566666899999999998886554 2    2  133   2344


Q ss_pred             HHhcCCcchH
Q psy10471        148 NEYRVPELNV  157 (318)
Q Consensus       148 ~~~~d~~~~v  157 (318)
                      -.+.|+.+.+
T Consensus       394 lhl~d~~p~v  403 (533)
T KOG2032|consen  394 LHLQDPNPYV  403 (533)
T ss_pred             eeeCCCChHH
Confidence            5556666544

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.60  E-value=0.039  Score=47.57  Aligned_cols=156  Identities=16%  Similarity=0.183  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH------------HHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471         44 KVQENCIDLVGRIADRGPEYVSAREWMRICFE------------LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL  111 (318)
Q Consensus        44 ~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~------------Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~L  111 (318)
                      +||.+|+.+|+.+++......-...|.-++.+            +--+++|++.++|.+|+.++..+-+...++-..   
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~---   77 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ---   77 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH---
Confidence            58999999999999985532212333333321            123458899999999999999988766555110   


Q ss_pred             HHhhcccchhhHH----HHHHHHH-HHHhhcCcccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHHcc--ccccchhhh
Q psy10471        112 LNNLKVQERQNRV----CTTVAIA-IVAETCSPFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYIGE--MGKDYIYAV  183 (318)
Q Consensus       112 l~~Lk~~~~~~R~----~~~~ai~-~i~~~~~p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~lg~--~~~~yl~~i  183 (318)
                           .+++..|.    .....++ ++-+      +=-.|+..++.+ +..+...++|++.....+..=  --.++++.+
T Consensus        78 -----Ae~~~~~~~sFtslS~tLa~~i~~------lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~  146 (182)
T PF13251_consen   78 -----AEESKGPSGSFTSLSSTLASMIME------LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV  146 (182)
T ss_pred             -----HHhcCCCCCCcccHHHHHHHHHHH------HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH
Confidence                 11111111    1122221 1110      001255555443 456678888888877765311  123566778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        184 TPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       184 iP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      +..+...+.+.|.++|-.+..+++.+...-
T Consensus       147 v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  147 VTQVRPLLRHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            888888889999999999999998886543

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.59  E-value=0.082  Score=52.60  Aligned_cols=196  Identities=16%  Similarity=0.092  Sum_probs=120.0

Q ss_pred             hhhhHHHHHHHHHHHhccC---cCCChH----------------------------hHHHHHHhhcCCCCHHHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCA---ILPHLK----------------------------NLVEIIEHGLVDEQQKVQENCIDL   52 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~---~~P~l~----------------------------~l~~~l~~~l~d~~~~vR~aa~~~   52 (318)
                      -|..|+|+|.+||..-...   -.|.+.                            .|+..+.....|-+......++.|
T Consensus       319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida  398 (898)
T COG5240         319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDA  398 (898)
T ss_pred             HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHH
Confidence            4778999999999854432   122222                            233333333333333344444444


Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH--HHHHHHHHHhhcccchhhHHHHHHH
Q psy10471         53 VGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP--HDVLATLLNNLKVQERQNRVCTTVA  129 (318)
Q Consensus        53 LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp--~~~l~~Ll~~Lk~~~~~~R~~~~~a  129 (318)
                      +..++-..     +.+|..++.=|.+.|.+ ....-++.++.++..+.+....  ..++..|.....+.++  +..+++-
T Consensus       399 ~rsLsl~F-----p~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey--~~I~vrI  471 (898)
T COG5240         399 LRSLSLLF-----PSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEY--HQITVRI  471 (898)
T ss_pred             HHHHHhhC-----cHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcch--hHHHHHH
Confidence            44444321     45666666555566666 4455677888888777764432  2456666666655543  3345666


Q ss_pred             HHHHHhhcC----cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHH
Q psy10471        130 IAIVAETCS----PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACA  204 (318)
Q Consensus       130 i~~i~~~~~----p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~  204 (318)
                      ++++++.+-    |..-+-...|.+--++.-+|.++++|++.+.-...+   ++.+ .+.-.+.++++|.|..+|..|+-
T Consensus       472 L~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf  548 (898)
T COG5240         472 LGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASF  548 (898)
T ss_pred             HHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence            677776543    444444555555555566889999999987765553   4444 57888999999999999999998


Q ss_pred             HHHHH
Q psy10471        205 TIKHM  209 (318)
Q Consensus       205 ~i~~l  209 (318)
                      ++..+
T Consensus       549 ~l~~~  553 (898)
T COG5240         549 LLRNM  553 (898)
T ss_pred             HHHhh
Confidence            88665

>KOG2022|consensus

Probab=96.55  E-value=1.3  Score=46.40  Aligned_cols=243  Identities=15%  Similarity=0.199  Sum_probs=132.5

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhh--
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKA--   82 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d--   82 (318)
                      |+...||.++.-.|+. --|++.-+|.+.+.|.  +++--..++.+|..+|+.+++...  ...++..+.+++   ..  
T Consensus       528 Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l---~~~~  601 (982)
T KOG2022|consen  528 TSSDLIGSLSNWLGEH-PMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVL---NKSN  601 (982)
T ss_pred             HHHHHHHHHHHHHhcC-CcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHh---cccc
Confidence            5667778777766652 1244445566666665  344555667778889988887663  245555555444   33  


Q ss_pred             chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh-------h--------cccchhhHHHH-HHHHHHHHhh----------
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGPHDVLATLLNN-------L--------KVQERQNRVCT-TVAIAIVAET----------  136 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~-------L--------k~~~~~~R~~~-~~ai~~i~~~----------  136 (318)
                      -+.+.|...++++|++...+-|++....+++.       |        ++++++.|.+- ..+++.++-.          
T Consensus       602 ~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~  681 (982)
T KOG2022|consen  602 AKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDT  681 (982)
T ss_pred             cCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccc
Confidence            46678999999999999988876443333331       1        23333444432 3333333310          


Q ss_pred             --------cC---c-----ccchHHHHHHhcC--CcchHHHHHHHHHHHHHHHHcccc-ccchhhhHHHHHHHHhcCCHH
Q psy10471        137 --------CS---P-----FTVLPALMNEYRV--PELNVQNGVLKALSFLFEYIGEMG-KDYIYAVTPLLEDALMDRDLV  197 (318)
Q Consensus       137 --------~~---p-----~~vip~L~~~~~d--~~~~v~~~vl~al~~i~~~lg~~~-~~yl~~iiP~l~~~l~~~~~~  197 (318)
                              ..   |     ..+||.+-+.+..  .+..+-.++|..+..=.+.++..| +++++++.|++.+....+-..
T Consensus       682 d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~  761 (982)
T KOG2022|consen  682 DQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAV  761 (982)
T ss_pred             cchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHH
Confidence                    00   1     1345555444321  223334555555444444555557 788899999999865444321


Q ss_pred             HH-HHHHH-HHHHHhhhhcCC---CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471        198 HR-QTACA-TIKHMALGVYGF---GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL  255 (318)
Q Consensus       198 ~R-~~a~~-~i~~la~~~~~~---~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al  255 (318)
                      -- -.++. ++....+.++..   .+...++|.+-..-+.-|-..++.-...+..+..+-+-.
T Consensus       762 tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~  824 (982)
T KOG2022|consen  762 TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKI  824 (982)
T ss_pred             HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhC
Confidence            11 11111 111111111110   234567776666556656667787777777666555544

>KOG2025|consensus

Probab=96.49  E-value=0.47  Score=48.46  Aligned_cols=206  Identities=16%  Similarity=0.168  Sum_probs=126.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh-CHH-HH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI-GPH-DV  107 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i-gp~-~~  107 (318)
                      +...++......+-.||.-++..|..+....++ ++-.-+-.+...++..++|..+.||..|+.++..+-..- +|. .+
T Consensus        86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v  164 (892)
T KOG2025|consen   86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPV  164 (892)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccH
Confidence            333344444445678999999999999884443 212345556667888899999999999999999987432 232 45


Q ss_pred             HHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHH----HHHHHHHHHHHHccccccchhh
Q psy10471        108 LATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNG----VLKALSFLFEYIGEMGKDYIYA  182 (318)
Q Consensus       108 l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~----vl~al~~i~~~lg~~~~~yl~~  182 (318)
                      .+.+...++ |++-.+|+++.-.|..      ...-.|..+..-+|-+...|+-    ++..+...+-        -+.+
T Consensus       165 ~n~l~~liqnDpS~EVRRaaLsnI~v------dnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~l--------si~k  230 (892)
T KOG2025|consen  165 VNLLKDLIQNDPSDEVRRAALSNISV------DNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSL--------SIDK  230 (892)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHhhcc------CcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhh--------hHHH
Confidence            666666665 5555788877654421      1245566777777766555532    3333322222        2246


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHH-HHHHcCh
Q psy10471        183 VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG-LRVALGP  257 (318)
Q Consensus       183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~-i~~alG~  257 (318)
                      -+-.+++-+.|++..+|+++.+++.+  .-+.  ..+.-+..++..+ +  .+.+.+++..+++++=. +..-+|.
T Consensus       231 rv~LlewgLnDRe~sVk~A~~d~il~--~Wl~--~~dgni~ElL~~l-d--vsnss~vavk~lealf~~v~e~v~~  299 (892)
T KOG2025|consen  231 RVLLLEWGLNDREFSVKGALVDAILS--GWLR--FSDGNILELLERL-D--VSNSSEVAVKALEALFSGVREDVGS  299 (892)
T ss_pred             HHHHHHHhhhhhhhHHHHHHHHHHHH--HHhh--hccccHHHHHHHh-c--cccchHHHHHHHHHHHHHHHHHhhh
Confidence            66788999999999999999998743  1111  0112233343332 1  12345788888887766 4444454

>KOG1943|consensus

Probab=96.48  E-value=0.51  Score=50.16  Aligned_cols=186  Identities=18%  Similarity=0.199  Sum_probs=109.2

Q ss_pred             CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHh
Q psy10471         22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAK  100 (318)
Q Consensus        22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~  100 (318)
                      ++--++..++..++..++|.+..||.+|++-+|.++.+.+...    -..++...++++.. +..+.=+-|+=+++.+|.
T Consensus       334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~  409 (1133)
T KOG1943|consen  334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELAL  409 (1133)
T ss_pred             ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence            3334566777778899999999999999999999999877322    22344444444444 222233466777777775


Q ss_pred             h--hCHH---HHHHHHHHhhcccch--------hhHHHHHHHHHHHHhhcCcc-------cchHHHHH-HhcCCcchHHH
Q psy10471        101 A--IGPH---DVLATLLNNLKVQER--------QNRVCTTVAIAIVAETCSPF-------TVLPALMN-EYRVPELNVQN  159 (318)
Q Consensus       101 ~--igp~---~~l~~Ll~~Lk~~~~--------~~R~~~~~ai~~i~~~~~p~-------~vip~L~~-~~~d~~~~v~~  159 (318)
                      .  +-|.   ++++.+++.|.-+++        ++|=++.=.+=..+..+.|.       .+.++|+. .+=|+|.++|+
T Consensus       410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRR  489 (1133)
T KOG1943|consen  410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRR  489 (1133)
T ss_pred             cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence            2  2242   677778887764443        23333322221233444432       34444433 55788888887


Q ss_pred             HHHHHHHHH----------------------------HHHHcc---ccccchhhhHHHHHHHHh----cCCHHHHHHHHH
Q psy10471        160 GVLKALSFL----------------------------FEYIGE---MGKDYIYAVTPLLEDALM----DRDLVHRQTACA  204 (318)
Q Consensus       160 ~vl~al~~i----------------------------~~~lg~---~~~~yl~~iiP~l~~~l~----~~~~~~R~~a~~  204 (318)
                      ++..|+-..                            +..+..   .+..|.   -|.+.+.++    +=|...|++++.
T Consensus       490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~---~~~f~~L~t~Kv~HWd~~irelaa~  566 (1133)
T KOG1943|consen  490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYR---EPVFNHLLTKKVCHWDVKIRELAAY  566 (1133)
T ss_pred             HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHH---HHHHHHHHhcccccccHHHHHHHHH
Confidence            766665411                            111111   012222   255555554    347899999999


Q ss_pred             HHHHHhhhhc
Q psy10471        205 TIKHMALGVY  214 (318)
Q Consensus       205 ~i~~la~~~~  214 (318)
                      .+..++..-.
T Consensus       567 aL~~Ls~~~p  576 (1133)
T KOG1943|consen  567 ALHKLSLTEP  576 (1133)
T ss_pred             HHHHHHHhhH
Confidence            9999877654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.47  E-value=0.064  Score=55.48  Aligned_cols=163  Identities=12%  Similarity=0.172  Sum_probs=109.4

Q ss_pred             hhhchHHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---cchHHHHHHhcCCc
Q psy10471         80 LKAHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEYRVPE  154 (318)
Q Consensus        80 L~d~~~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L~~~~~d~~  154 (318)
                      +.+++...|..|++.+-.-.. .|..  .+.+..+++....+...++++..-+...++. .|.   -+++.+++.+.||+
T Consensus        28 l~s~n~~~kidAmK~iIa~M~-~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~-~P~~~lLavNti~kDl~d~N  105 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMS-LGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-KPELALLAVNTIQKDLQDPN  105 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhhccCCC
Confidence            456677788888888643221 4432  3555555555544445566655544444322 122   57788999999999


Q ss_pred             chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH-HHHHHHhhhhcc
Q psy10471        155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA-LTHLLNYVWPNI  233 (318)
Q Consensus       155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~-i~hll~~l~~~i  233 (318)
                      +.+|..+++.++.+=      .+..+..+++.+.++++|+.+-+|++|+-++..+=..-+ .-+.+. ..+++..+   .
T Consensus       106 ~~iR~~AlR~ls~l~------~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l~~~~g~~~~l~~l---~  175 (757)
T COG5096         106 EEIRGFALRTLSLLR------VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DLYHELGLIDILKEL---V  175 (757)
T ss_pred             HHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hhhhcccHHHHHHHH---h
Confidence            999999988877542      245678889999999999999999999999988743322 112222 44444444   4


Q ss_pred             cCCChHHHHHHHHHHHHHHHH
Q psy10471        234 FETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       234 ~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      .|++|.+..+++.++..+..-
T Consensus       176 ~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         176 ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             hCCCchHHHHHHHHHHHhchh
Confidence            568999999888888777554

>KOG1993|consensus

Probab=96.46  E-value=0.25  Score=50.88  Aligned_cols=188  Identities=16%  Similarity=0.194  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-c-hHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhH
Q psy10471         46 QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-H-KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNR  123 (318)
Q Consensus        46 R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~-~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R  123 (318)
                      +.|...+.|.-|....+.++...|..-.. +.++-.| + .+-+||-..+-+|+=...=-+.               ..|
T Consensus       461 KDAiYaa~g~~a~~l~~~~dF~~Wl~~~l-lpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~---------------e~k  524 (978)
T KOG1993|consen  461 KDAIYAAFGLAAYELSNILDFDKWLQEAL-LPELANDHGNSRIIRRRVAWILGQWVSVQQKL---------------ELK  524 (978)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHhh-CHHhhhcccchhHHHHHHHHHHhhhhheechH---------------hHH
Confidence            56777888888876555665566655322 1122244 3 3347888888888755411111               122


Q ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHhcCC-cchHHHHHHHHHHHHHHHH---ccccccchhhhHHHHHHHH---hcCC-
Q psy10471        124 VCTTVAIAIVAETCSPFTVLPALMNEYRVP-ELNVQNGVLKALSFLFEYI---GEMGKDYIYAVTPLLEDAL---MDRD-  195 (318)
Q Consensus       124 ~~~~~ai~~i~~~~~p~~vip~L~~~~~d~-~~~v~~~vl~al~~i~~~l---g~~~~~yl~~iiP~l~~~l---~~~~-  195 (318)
                      .+.+.|                +.+.++|+ +.-++-....++..+.+-.   .+.|-||++.+--.+...+   ..+| 
T Consensus       525 ~l~Y~a----------------~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dt  588 (978)
T KOG1993|consen  525 PLLYCA----------------FLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDT  588 (978)
T ss_pred             HHHHHH----------------HHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhh
Confidence            222221                44455554 3334444444444443322   2234445543333333333   2333 


Q ss_pred             -HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh
Q psy10471        196 -LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL  268 (318)
Q Consensus       196 -~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l  268 (318)
                       ..+--....+|+++.+.+.  .++..+..++|.+|+.-. +.+=+|.+++.++..++.++|.+.  +.|.+.|++
T Consensus       589 k~~VL~~ls~lI~r~~e~I~--P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI  661 (978)
T KOG1993|consen  589 KTSVLNLLSTLIERVSEHIA--PYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI  661 (978)
T ss_pred             HHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence             2444455556666655553  556777788888876643 456689999999999999999864  899999999

>KOG1943|consensus

Probab=96.45  E-value=1  Score=47.99  Aligned_cols=244  Identities=16%  Similarity=0.138  Sum_probs=136.3

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCC--hHhHHHHHHhhcCCC--------CHHHHHHHHHHHHHHHhhCCCCCChhhHHH--
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPH--LKNLVEIIEHGLVDE--------QQKVQENCIDLVGRIADRGPEYVSAREWMR--   71 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~--l~~l~~~l~~~l~d~--------~~~vR~aa~~~LG~la~~~~~~i~~~~~~~--   71 (318)
                      .=|.|.-++++||.   .++.+|  +..++|+++..|.-+        ...||.||+-.+=.++....    +.+..|  
T Consensus       396 aWHgacLaLAELA~---rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays----~~~l~p~l  468 (1133)
T KOG1943|consen  396 AWHGACLALAELAL---RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS----PSDLKPVL  468 (1133)
T ss_pred             HHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC----hhhhhHHH
Confidence            34777777777776   445555  568999998877643        36699999765555554322    223333  


Q ss_pred             --HHHHH-HHHhhhchHHHHHHHHHHHHH----HHhh---------hCH---------H---------------HHHHHH
Q psy10471         72 --ICFEL-LELLKAHKKAIRRATVNTFGY----IAKA---------IGP---------H---------------DVLATL  111 (318)
Q Consensus        72 --il~~L-l~~L~d~~~~vR~~av~~lg~----la~~---------igp---------~---------------~~l~~L  111 (318)
                        +...| ...+=|++-..||+|--+|-.    .++.         ++-         |               .++++|
T Consensus       469 ~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L  548 (1133)
T KOG1943|consen  469 QSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHL  548 (1133)
T ss_pred             HHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHH
Confidence              33332 344566788899998777633    2211         110         0               122222


Q ss_pred             HHh-hcccchhhHHHHHHHHHHHHhhc---CcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-c---------cc
Q psy10471        112 LNN-LKVQERQNRVCTTVAIAIVAETC---SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-M---------GK  177 (318)
Q Consensus       112 l~~-Lk~~~~~~R~~~~~ai~~i~~~~---~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~-~---------~~  177 (318)
                      +.+ +-.=+...|-..+.++..++...   ....++|.++...-..+.+.+.++..+.+.+.-++-. .         -.
T Consensus       549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i  628 (1133)
T KOG1943|consen  549 LTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI  628 (1133)
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh
Confidence            221 11112246667777776655433   2347888888888888888887777777766544321 1         11


Q ss_pred             cchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471        178 DYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL  255 (318)
Q Consensus       178 ~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al  255 (318)
                      .-+++++|.+...-..+.  ...|+.....|+.+..+-.....+-.+....-.+.+++.+.+ ..|..+..++..++...
T Consensus       629 ~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y  707 (1133)
T KOG1943|consen  629 AGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTY  707 (1133)
T ss_pred             hhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHH
Confidence            112334555554443443  577777777777765443211112222223333334443344 78888888888887765

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=96.44  E-value=0.045  Score=51.06  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=93.1

Q ss_pred             chHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc
Q psy10471        155 LNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI  233 (318)
Q Consensus       155 ~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i  233 (318)
                      ..||.-+++....||+.+|. .....++-..|.+.-++..+...+|-...+.++.--.-++. .-...+.-++.-++|++
T Consensus        69 sGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGL  147 (307)
T PF04118_consen   69 SGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGL  147 (307)
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhcccc
Confidence            37899999999999999997 35566666777777777788899999999999876554421 12245556667778999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc
Q psy10471        234 FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH  270 (318)
Q Consensus       234 ~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~  270 (318)
                      -|++.++-..++..++.+..++|.+.|.+.+|-.+..
T Consensus       148 ede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~  184 (307)
T PF04118_consen  148 EDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT  184 (307)
T ss_pred             ccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc
Confidence            9899999999999999999999999999988888864

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.40  E-value=0.0076  Score=36.12  Aligned_cols=30  Identities=27%  Similarity=0.265  Sum_probs=26.8

Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        183 VTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                      ++|.+.+.++|.++.+|++++..++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            589999999999999999999999998765

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1060|consensus

Probab=96.34  E-value=0.22  Score=51.22  Aligned_cols=175  Identities=17%  Similarity=0.171  Sum_probs=95.1

Q ss_pred             CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471         24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG  103 (318)
Q Consensus        24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig  103 (318)
                      -|-++-++...-|+|...+|.|--|++.+.=++|-.       .+.-.|...|+..|..+ +.+|...+.++..++. -.
T Consensus       282 d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~-------~~~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~-~~  352 (968)
T KOG1060|consen  282 DPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK-------NQVTKIAKALVRLLRSN-REVQYVVLQNIATISI-KR  352 (968)
T ss_pred             CccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH-------HHHHHHHHHHHHHHhcC-CcchhhhHHHHHHHHh-cc
Confidence            444677888888999999999999999988887752       34455677777777763 3477777777777775 33


Q ss_pred             HHHHHHHHHHhh-cccch-hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh
Q psy10471        104 PHDVLATLLNNL-KVQER-QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY  181 (318)
Q Consensus       104 p~~~l~~Ll~~L-k~~~~-~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~  181 (318)
                      |.-..+++-+.+ +..+- +......+-+..++.+..-.++++-|..-.++++.++-...++||+.|...++..-    +
T Consensus       353 ~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~----~  428 (968)
T KOG1060|consen  353 PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVT----D  428 (968)
T ss_pred             hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchh----h
Confidence            322222222211 11111 22222233333333332222333333333344444455566666666666555322    3


Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471        182 AVTPLLEDALMDRDLVHRQTACATIKHMAL  211 (318)
Q Consensus       182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~  211 (318)
                      ..+-.+..+++..+..+-..+..+|..|.+
T Consensus       429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq  458 (968)
T KOG1060|consen  429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQ  458 (968)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHh
Confidence            344455555555555555555555554433

>KOG1078|consensus

Probab=96.34  E-value=0.65  Score=47.90  Aligned_cols=73  Identities=21%  Similarity=0.169  Sum_probs=54.6

Q ss_pred             CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471         24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA  101 (318)
Q Consensus        24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~  101 (318)
                      .+...++++.+-..+++.+.+|-.-|++++-.+....+     +++.|.+..|=-+++.++...|.+|++++..+|-.
T Consensus       240 ~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~-----r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~  312 (865)
T KOG1078|consen  240 QQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS-----RELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMK  312 (865)
T ss_pred             ccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH-----hhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence            55567788888889999999999888888877765433     34444444343445778899999999999998863

>KOG1060|consensus

Probab=96.33  E-value=0.19  Score=51.69  Aligned_cols=164  Identities=18%  Similarity=0.235  Sum_probs=111.6

Q ss_pred             HHHHhhhchHHHHHHHHHH-HHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcC
Q psy10471         76 LLELLKAHKKAIRRATVNT-FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRV  152 (318)
Q Consensus        76 Ll~~L~d~~~~vR~~av~~-lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d  152 (318)
                      |.++|.+++++-+.+|++- ++.+|+.-+-..+.+..++|...++-.++..+..-+--.||.---  ---+..+-+.++|
T Consensus        40 L~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L~D  119 (968)
T KOG1060|consen   40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKALKD  119 (968)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhhcC
Confidence            4566678777777777766 588887766677888888888776667777777666555544221  1456679999999


Q ss_pred             CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc--hhHHHHHHHhhh
Q psy10471        153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC--EDALTHLLNYVW  230 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~--~~~i~hll~~l~  230 (318)
                      |++.+|..++.+++.|=-      .--.|-++-.+.++.+|..+-||+.||-+|-.+    .-.+.  .+.+..+...+ 
T Consensus       120 pN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKL----YsLd~e~k~qL~e~I~~L-  188 (968)
T KOG1060|consen  120 PNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKL----YSLDPEQKDQLEEVIKKL-  188 (968)
T ss_pred             CcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHH----hcCChhhHHHHHHHHHHH-
Confidence            999999999999886532      112245556666777788899999999999655    32222  22333333333 


Q ss_pred             hcccCCChHHHHHHHHHHHHHH
Q psy10471        231 PNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       231 ~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                        +.|.++-|-..+.-+.+.+|
T Consensus       189 --LaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  189 --LADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             --hcCCCCcchhHHHHHHHHhc
Confidence              44577777777777776664

>KOG1248|consensus

Probab=96.28  E-value=0.52  Score=50.55  Aligned_cols=222  Identities=12%  Similarity=0.179  Sum_probs=133.3

Q ss_pred             HHHHHHHHHHHh-cc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH
Q psy10471          8 GIKIVQQIAILM-GC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK   85 (318)
Q Consensus         8 ~l~~i~~La~~~-g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~   85 (318)
                      +-+.|+++.... |. ....++..+...+.+-+++-....|...+++|..|-+..+.+. -..++..+.+++=.+|+.+.
T Consensus       674 ~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~-~~~i~k~I~EvIL~~Ke~n~  752 (1176)
T KOG1248|consen  674 AYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH-CDLIPKLIPEVILSLKEVNV  752 (1176)
T ss_pred             HHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHhcccccH
Confidence            446777777751 11 3566677777777777777777789999999999998766211 12333344433333488777


Q ss_pred             HHHHHHHHHHHHHHh---hh--C--H-HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchH
Q psy10471         86 AIRRATVNTFGYIAK---AI--G--P-HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV  157 (318)
Q Consensus        86 ~vR~~av~~lg~la~---~i--g--p-~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v  157 (318)
                      .-|+.|..++..+++   ..  |  | ...++..+..+...                           ++    ..+..+
T Consensus       753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag---------------------------l~----gd~~~~  801 (1176)
T KOG1248|consen  753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG---------------------------LV----GDSTRV  801 (1176)
T ss_pred             HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh---------------------------hc----ccHHHH
Confidence            778887777766663   11  1  1 22333333333211                           00    001111


Q ss_pred             HHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc---
Q psy10471        158 QNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI---  233 (318)
Q Consensus       158 ~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i---  233 (318)
                      ...-+=++..++.-.+. .-.+++++++..+.-.+....+.+++.|...+..++....    +..+...++-+++.+   
T Consensus       802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p----e~~l~~~~~~LL~sll~l  877 (1176)
T KOG1248|consen  802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP----EECLSPHLEELLPSLLAL  877 (1176)
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC----HHHHhhhHHHHHHHHHHH
Confidence            11102233333322222 2356788888888888889999999999998877755542    222333333334444   


Q ss_pred             -cCCChHHHHHHHHHHHHHHHHcChhhHHHhHH
Q psy10471        234 -FETSPHLVQAFMDAVEGLRVALGPVRILQYVL  265 (318)
Q Consensus       234 -~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl  265 (318)
                       .|...++|..+-..++.++.-.|.+.+.+++-
T Consensus       878 s~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  878 SHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence             45678899999999999999999987666544

>KOG0168|consensus

Probab=96.26  E-value=0.51  Score=49.10  Aligned_cols=182  Identities=16%  Similarity=0.198  Sum_probs=117.6

Q ss_pred             HHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCC-CCCC---hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC
Q psy10471         30 LVEIIEHGLVDE-QQKVQENCIDLVGRIADRGP-EYVS---AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG  103 (318)
Q Consensus        30 l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~-~~i~---~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig  103 (318)
                      =+..++..|+.. +|..+-.++.-+-+.-.-+- +..+   .+.+.|.+.   .+|++ .++.+--.|++++.++.+.+.
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv---~LL~~E~n~DIMl~AcRaltyl~evlP  244 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLV---ALLSHEHNFDIMLLACRALTYLCEVLP  244 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHH---HHHhccccHHHHHHHHHHHHHHHhhcc
Confidence            345567777776 67777777766666554322 2222   467777755   55588 688999999999999999887


Q ss_pred             HH-------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhh----cCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        104 PH-------DVLATLLNNLKVQER-QNRVCTTVAIAIVAET----CSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       104 p~-------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~----~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                      +.       ..++.|+.-|..=++ .+=--..+|+-+|+..    |-....+-+.+.-+..-+...|+.++....++|+.
T Consensus       245 ~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cks  324 (1051)
T KOG0168|consen  245 RSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKS  324 (1051)
T ss_pred             chhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            64       356666665542222 1101122333333311    11112222222222333456788899999999999


Q ss_pred             HccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        172 IGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       172 lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      +...--.|+-..+|.+..++...|...-...+..+..++....
T Consensus       325 i~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  325 IRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             CCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            9887777888899999999999998888888888888877664

>KOG1059|consensus

Probab=96.22  E-value=0.3  Score=49.84  Aligned_cols=230  Identities=12%  Similarity=0.107  Sum_probs=144.6

Q ss_pred             CcCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471         22 AILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAK  100 (318)
Q Consensus        22 ~~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~  100 (318)
                      -+.|-+ ++|-+-+.-+|+...|-+|.-|+..+=.+.-..+     +.+-|-+..|-+-|.|+.++|..+|+..+..+|.
T Consensus       136 fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELAr  210 (877)
T KOG1059|consen  136 IVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELAR  210 (877)
T ss_pred             ccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence            356666 4677778888888889999888888877765432     2333445577788899999999999999999997


Q ss_pred             hhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        101 AIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------FTVLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       101 ~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                      .- |.   .+-+.+.+.|.+.+.  -.+... |-.++-...|      -.++|++.+.++.-..  ..-+-+|+..+...
T Consensus       211 Kn-PknyL~LAP~ffkllttSsN--NWmLIK-iiKLF~aLtplEPRLgKKLieplt~li~sT~A--mSLlYECvNTVVa~  284 (877)
T KOG1059|consen  211 KN-PQNYLQLAPLFYKLLVTSSN--NWVLIK-LLKLFAALTPLEPRLGKKLIEPITELMESTVA--MSLLYECVNTVVAV  284 (877)
T ss_pred             hC-CcccccccHHHHHHHhccCC--CeehHH-HHHHHhhccccCchhhhhhhhHHHHHHHhhHH--HHHHHHHHHHheee
Confidence            53 32   233344444433221  011111 1123333333      2788888887754221  11122333333322


Q ss_pred             -H--cc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHH
Q psy10471        172 -I--GE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA  247 (318)
Q Consensus       172 -l--g~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~  247 (318)
                       +  |. ....-+..-+..+..++.+.|++.|=...-+++.++..-.     ..++.....++.++-|.++.+|..+++.
T Consensus       285 s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp-----~~Vqa~kdlIlrcL~DkD~SIRlrALdL  359 (877)
T KOG1059|consen  285 SMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP-----KAVQAHKDLILRCLDDKDESIRLRALDL  359 (877)
T ss_pred             hhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH-----HHHHHhHHHHHHHhccCCchhHHHHHHH
Confidence             1  11 2222333455666777889999999888888877755432     4555556677888889999999999999


Q ss_pred             HHHHHHHcChhhHHHhHHHHhcc
Q psy10471        248 VEGLRVALGPVRILQYVLQGLFH  270 (318)
Q Consensus       248 i~~i~~alG~~~~~~~vl~~l~~  270 (318)
                      +..|+   ..+.++.-|-..|-|
T Consensus       360 l~gmV---skkNl~eIVk~LM~~  379 (877)
T KOG1059|consen  360 LYGMV---SKKNLMEIVKTLMKH  379 (877)
T ss_pred             HHHHh---hhhhHHHHHHHHHHH
Confidence            98885   456666666666655

>KOG1993|consensus

Probab=96.19  E-value=0.71  Score=47.74  Aligned_cols=205  Identities=14%  Similarity=0.086  Sum_probs=118.2

Q ss_pred             HHhhcCCCCHH-HHHHHHHHHHHHHhhCC-CCCChhhHHHHHH-HHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         34 IEHGLVDEQQK-VQENCIDLVGRIADRGP-EYVSAREWMRICF-ELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        34 l~~~l~d~~~~-vR~aa~~~LG~la~~~~-~~i~~~~~~~il~-~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      ++.+++|++.. ||-+|+.|+--..+.-. -.-+...+.+.++ .+..+++. .....|-..+.+++.+.+.++++.. +
T Consensus       531 ~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~-P  609 (978)
T KOG1993|consen  531 FLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA-P  609 (978)
T ss_pred             HHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh-H
Confidence            68899998655 69999999998886332 1001122223333 45567777 6677888889998888777776521 1


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC--CcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471        110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV--PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL  187 (318)
Q Consensus       110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d--~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l  187 (318)
                      ...                            +++..+=+.++.  .++-.+.+++.++.++..++|.....+.+-+.|.+
T Consensus       610 ~~~----------------------------~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVI  661 (978)
T KOG1993|consen  610 YAS----------------------------TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVI  661 (978)
T ss_pred             HHH----------------------------HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHH
Confidence            110                            011112222322  34557899999999999999998888888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471        188 EDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ  266 (318)
Q Consensus       188 ~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~  266 (318)
                      .-...-.++.+--...+.++-=...+... -..+.+.-+.|++.+.|. .+.+-..+++.-|.+=..--++.++..|-..
T Consensus       662 el~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE-~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~  740 (978)
T KOG1993|consen  662 ELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIE-QSTENLPTVLMIISSYILLDNTVFLNDYAFG  740 (978)
T ss_pred             HHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            87775555554433333333221112111 123333444444444332 3334444566666666555566655555544


Q ss_pred             Hh
Q psy10471        267 GL  268 (318)
Q Consensus       267 ~l  268 (318)
                      ..
T Consensus       741 i~  742 (978)
T KOG1993|consen  741 IF  742 (978)
T ss_pred             HH
Confidence            44

>KOG1243|consensus

Probab=96.09  E-value=0.014  Score=59.07  Aligned_cols=170  Identities=19%  Similarity=0.221  Sum_probs=127.0

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCC-ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILP-HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P-~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      ++||+.=+..|.++-.-.+..-.+ +-+++.|-+...++|.++..|+.+++++..+|..-++...-.|.++.+.   ...
T Consensus       341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~a---r~q  417 (690)
T KOG1243|consen  341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLA---RLQ  417 (690)
T ss_pred             CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHH---hhC
Confidence            578888888888887755543322 3357999999999999999999999999999987665432466777665   333


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcC
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRV  152 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d  152 (318)
                      .|++..+|--+..++|.|+..+.|.    .+..++.+.+|+.-...|.....++....+.+..    ..++|.+.-.+-|
T Consensus       418 ~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd  497 (690)
T KOG1243|consen  418 PDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVD  497 (690)
T ss_pred             ccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccC
Confidence            5677789988888888888777665    3455666777877777788887777654433321    3788888888899


Q ss_pred             CcchHHHHHHHHHHHHHHHHcc
Q psy10471        153 PELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~  174 (318)
                      ++..++....+++..+...+..
T Consensus       498 ~e~~vr~~a~~~i~~fl~kl~~  519 (690)
T KOG1243|consen  498 PEKTVRDTAEKAIRQFLEKLEK  519 (690)
T ss_pred             cccchhhHHHHHHHHHHhhhhh
Confidence            9999999999998887766554

>KOG1062|consensus

Probab=96.08  E-value=2.2  Score=44.28  Aligned_cols=222  Identities=17%  Similarity=0.130  Sum_probs=124.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCC---CCChhhHHHHHH-----------HHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471         41 EQQKVQENCIDLVGRIADRGPE---YVSAREWMRICF-----------ELLELLKAHKKAIRRATVNTFGYIAKAIGPHD  106 (318)
Q Consensus        41 ~~~~vR~aa~~~LG~la~~~~~---~i~~~~~~~il~-----------~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~  106 (318)
                      ++++.|..|++.||.+-.+...   |+...-+++++.           .+++.|+|+..++||.|++-.-.+.+.-.=..
T Consensus       306 ~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~  385 (866)
T KOG1062|consen  306 SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRV  385 (866)
T ss_pred             CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH
Confidence            4688899999999988765442   322344444332           25789999999999999999988887655556


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471        107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT  184 (318)
Q Consensus       107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii  184 (318)
                      +...|+..|...+...|.-.+-.|..++|++.|.  --+..+++++...-.-|+..+...+..+...--...-.|  ++.
T Consensus       386 mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y--~~~  463 (866)
T KOG1062|consen  386 MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY--AVL  463 (866)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH--HHH
Confidence            7888888888667777778888888888998874  233445555544333333333333322221110000011  111


Q ss_pred             HHHHHHHh-----cCCHHHHHHHHHHHHHHhh-hhcCCC-------ch-hHHHHHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471        185 PLLEDALM-----DRDLVHRQTACATIKHMAL-GVYGFG-------CE-DALTHLLNYVWPNIFETSPHLVQAFMDAVEG  250 (318)
Q Consensus       185 P~l~~~l~-----~~~~~~R~~a~~~i~~la~-~~~~~~-------~~-~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~  250 (318)
                      -.+..+..     -....+-|-+.++||.=.. -+.+.+       .| +.+..+...+...  ..+...++.++.++-.
T Consensus       464 rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~--~s~~~tk~yal~Al~K  541 (866)
T KOG1062|consen  464 RLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH--SSDSTTKGYALTALLK  541 (866)
T ss_pred             HHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHH
Confidence            11111111     1123345556666665441 112111       12 3333333332222  1346778888888888


Q ss_pred             HHHHcChhhHHHhHHHHh
Q psy10471        251 LRVALGPVRILQYVLQGL  268 (318)
Q Consensus       251 i~~alG~~~~~~~vl~~l  268 (318)
                      +....+..  .+.+-+.+
T Consensus       542 LSsr~~s~--~~ri~~lI  557 (866)
T KOG1062|consen  542 LSSRFHSS--SERIKQLI  557 (866)
T ss_pred             HHhhcccc--HHHHHHHH
Confidence            88777764  45555555

>KOG1949|consensus

Probab=96.03  E-value=0.28  Score=49.96  Aligned_cols=154  Identities=19%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             cCCChHhHHH-----HHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH----HHHHHhhhchHHHHHHHHH
Q psy10471         23 ILPHLKNLVE-----IIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF----ELLELLKAHKKAIRRATVN   93 (318)
Q Consensus        23 ~~P~l~~l~~-----~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~----~Ll~~L~d~~~~vR~~av~   93 (318)
                      ...-+++++-     ++...|+-+|..||.+|+..+=.+----+|..-.++..+++.    .|.++|.|+-+.||..|+.
T Consensus       163 ~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~  242 (1005)
T KOG1949|consen  163 VRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAIL  242 (1005)
T ss_pred             HhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            4445555553     345567778999999998877665443334332345555554    3567789999999999988


Q ss_pred             HHHHHHhh----hCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471         94 TFGYIAKA----IGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLF  169 (318)
Q Consensus        94 ~lg~la~~----igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~  169 (318)
                      .+..+-..    +.|. ++..+|+-.-++                              .-.|...+||-++++.+..+.
T Consensus       243 gv~k~~s~fWe~iP~~-i~~~ll~kI~d~------------------------------~a~dt~s~VR~svf~gl~~~l  291 (1005)
T KOG1949|consen  243 GVCKITSKFWEMIPPT-ILIDLLKKITDE------------------------------LAFDTSSDVRCSVFKGLPMIL  291 (1005)
T ss_pred             HHHHHHHHHHHHcCHH-HHHHHHHHHHHH------------------------------hhhccchheehhHhcCcHHHH
Confidence            87654432    3333 333333322110                              012222355555555555554


Q ss_pred             HHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471        170 EYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHM  209 (318)
Q Consensus       170 ~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~l  209 (318)
                      .  ...+-+-+.+++|.+...+.|.+..+|-++.+.+-.+
T Consensus       292 ~--np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i  329 (1005)
T KOG1949|consen  292 D--NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI  329 (1005)
T ss_pred             c--CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence            3  2333445555666666666666666666666555443

>KOG0414|consensus

Probab=96.03  E-value=0.22  Score=53.20  Aligned_cols=177  Identities=14%  Similarity=0.227  Sum_probs=118.3

Q ss_pred             ChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHh
Q psy10471         26 HLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAK  100 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-d~~~~vR~~av~~lg~la~  100 (318)
                      -+....|.+...+++    .+|..|.||-.+||.+.--+..+  -.+.+|.++   .++. .+++.+|--++.++|-++=
T Consensus       916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f--ces~l~llf---timeksp~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF--CESHLPLLF---TIMEKSPSPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH---HHHhcCCCceeeecchheccchhh
Confidence            456677788888876    36999999999999987655443  256677766   4445 5789999999999998873


Q ss_pred             hhCHH---HHHHHHHHhhcccchhhHHHHHHHHH--HHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc
Q psy10471        101 AIGPH---DVLATLLNNLKVQERQNRVCTTVAIA--IVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM  175 (318)
Q Consensus       101 ~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~--~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~  175 (318)
                      . =|+   ..-++|..-|+|++-.+|..+...+.  ++++...--..++-.-.-+.||+.+++..+    ..+|+-+..+
T Consensus       991 ~-fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlA----k~FF~Els~k 1065 (1251)
T KOG0414|consen  991 R-FPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLA----KSFFKELSSK 1065 (1251)
T ss_pred             h-cccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHH----HHHHHHhhhc
Confidence            2 232   23567888899888888888777665  344433222445555556678887766533    3577777766


Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      . +-+++++|-+..-+.++. .-+.....+++.+...++
T Consensus      1066 ~-n~iynlLPdil~~Ls~~~-l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1066 G-NTIYNLLPDILSRLSNGN-LEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred             c-cchhhhchHHHHhhccCc-ccchhhHHHHHHHHHHhc
Confidence            6 677888999998887773 222333334444433334

>KOG1078|consensus

Probab=95.97  E-value=0.26  Score=50.72  Aligned_cols=147  Identities=12%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhhchHHH
Q psy10471         10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKAHKKAI   87 (318)
Q Consensus        10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d~~~~v   87 (318)
                      +++..+....+..+.|    -+..+-+.|..+.+-.|.+|.++|.++|..-+.-+.  ..++.       .+.+|.+.++
T Consensus       267 rai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE-------~lItd~NrsI  335 (865)
T KOG1078|consen  267 RAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLE-------SLITDSNRSI  335 (865)
T ss_pred             HHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHH-------hhhcccccch
Confidence            3444444444444555    444455667777888899999999999998775443  13333       2335555554


Q ss_pred             HHHHHHHHHHHHhhhCHHHHHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCC-cchHHHH
Q psy10471         88 RRATVNTFGYIAKAIGPHDVLATLLNNLK----VQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVP-ELNVQNG  160 (318)
Q Consensus        88 R~~av~~lg~la~~igp~~~l~~Ll~~Lk----~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~-~~~v~~~  160 (318)
                      ---|+-++-.    .|-..-+++|++..-    +=+-.....+++||..++..+-.  ...++.|.+.+++. .-+-+++
T Consensus       336 at~AITtLLK----TG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~a  411 (865)
T KOG1078|consen  336 ATLAITTLLK----TGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRA  411 (865)
T ss_pred             hHHHHHHHHH----hcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHH
Confidence            4444444322    333323333333221    00001222344555444444321  36677777777663 3455577


Q ss_pred             HHHHHHHHHHH
Q psy10471        161 VLKALSFLFEY  171 (318)
Q Consensus       161 vl~al~~i~~~  171 (318)
                      ++.++..+.+.
T Consensus       412 ivd~Ii~iie~  422 (865)
T KOG1078|consen  412 IVDAIIDIIEE  422 (865)
T ss_pred             HHHHHHHHHHh
Confidence            77777666553

>KOG1967|consensus

Probab=95.90  E-value=0.12  Score=53.92  Aligned_cols=142  Identities=19%  Similarity=0.324  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-------------------HHHHHHHHHhhcccchhhHHHHHHHHH
Q psy10471         71 RICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-------------------HDVLATLLNNLKVQERQNRVCTTVAIA  131 (318)
Q Consensus        71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-------------------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~  131 (318)
                      ++...+++.|++  +++-..+.+.|..+.....|                   .++.+.|+...+.+....|..-..+++
T Consensus       815 ~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  815 EIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS  892 (1030)
T ss_pred             hHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence            455556666676  55666777778777665554                   156777888887555555666666665


Q ss_pred             HH-H----hhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC---HHHHHH
Q psy10471        132 IV-A----ETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQT  201 (318)
Q Consensus       132 ~i-~----~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~---~~~R~~  201 (318)
                      .+ .    ....|.  .++|-|++.+.-|+..+|-..+.++.-...-.+.-...|+..++|.+..+-.+.+   ..+|..
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHH
Confidence            32 2    123343  7888999999999999998899999888877777788899999999999988776   789999


Q ss_pred             HHHHHHHHhhhhc
Q psy10471        202 ACATIKHMALGVY  214 (318)
Q Consensus       202 a~~~i~~la~~~~  214 (318)
                      |.+.+..+.+...
T Consensus       973 ALqcL~aL~~~~P  985 (1030)
T KOG1967|consen  973 ALQCLNALTRRLP  985 (1030)
T ss_pred             HHHHHHHHhccCC
Confidence            9999988877553

>KOG1991|consensus

Probab=95.85  E-value=1.4  Score=46.68  Aligned_cols=186  Identities=12%  Similarity=0.132  Sum_probs=108.7

Q ss_pred             hhhhHHHHHHHHHHHhccC-cCCChHhHHHHHHhhc----CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH--HHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCA-ILPHLKNLVEIIEHGL----VDEQQKVQENCIDLVGRIADRGPEYVSAREWMR--ICFEL   76 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l----~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~--il~~L   76 (318)
                      -+-+++.++-.++.-=|.. +.+-++=++.++...-    .+.+++....|+.++|.+++-.-..-..+.-+.  +...+
T Consensus       388 p~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV  467 (1010)
T KOG1991|consen  388 PDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV  467 (1010)
T ss_pred             CcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence            3456777888888866553 3333333444443222    234688899999999999973321111122222  22345


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHh-hhC-HH---HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcC---c--ccchHH
Q psy10471         77 LELLKAHKKAIRRATVNTFGYIAK-AIG-PH---DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCS---P--FTVLPA  145 (318)
Q Consensus        77 l~~L~d~~~~vR~~av~~lg~la~-~ig-p~---~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~---p--~~vip~  145 (318)
                      +..++++---.|.-|++.+++.++ ... |.   .++..-.+.|+ +.++.+|+..+.|+...-..+-   +  ...+|.
T Consensus       468 fP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~  547 (1010)
T KOG1991|consen  468 FPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPP  547 (1010)
T ss_pred             hHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhH
Confidence            556678777799999999999994 222 33   34555667777 6677899999999964322222   2  245555


Q ss_pred             HHH----HhcCCcchHHHHHHHHHHHHHHHHccccccchhh----hHHHHHHHHh
Q psy10471        146 LMN----EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA----VTPLLEDALM  192 (318)
Q Consensus       146 L~~----~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~----iiP~l~~~l~  192 (318)
                      .|+    ..++-|.+.-+.+++   .+....+....||-.+    +.-.|.+++.
T Consensus       548 ~mq~lL~L~ne~End~Lt~vme---~iV~~fseElsPfA~eL~q~La~~F~k~l~  599 (1010)
T KOG1991|consen  548 IMQELLKLSNEVENDDLTNVME---KIVCKFSEELSPFAVELCQNLAETFLKVLQ  599 (1010)
T ss_pred             HHHHHHHHHHhcchhHHHHHHH---HHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence            444    444444444444444   4444556666667654    4444555555

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=95.81  E-value=0.24  Score=50.62  Aligned_cols=140  Identities=12%  Similarity=0.128  Sum_probs=89.0

Q ss_pred             cCCChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCCCC----------CC--hhhHHHHHHHHHHHhhh-chH
Q psy10471         23 ILPHLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGPEY----------VS--AREWMRICFELLELLKA-HKK   85 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~~~----------i~--~~~~~~il~~Ll~~L~d-~~~   85 (318)
                      ..-+-.+++..+.++++.    .++.+|.+|+.++|.++......          ..  .+++.+-+...+....+ .+.
T Consensus       425 ~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  504 (618)
T PF01347_consen  425 VRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDE  504 (618)
T ss_dssp             -----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-H
T ss_pred             cCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCH
Confidence            335556788877777775    36789999999999988532211          11  46666666655543223 455


Q ss_pred             HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhccc---chhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC--cchHHHH
Q psy10471         86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ---ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP--ELNVQNG  160 (318)
Q Consensus        86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~---~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~--~~~v~~~  160 (318)
                      ..+..+++++|.++-    ...++.|+..+..+   ....|..++.|+..+++.| |..+.+.|+.+|.+.  +.++|.+
T Consensus       505 ~~~~~~LkaLgN~g~----~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~~e~~EvRia  579 (618)
T PF01347_consen  505 EEKIVYLKALGNLGH----PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNTTEDPEVRIA  579 (618)
T ss_dssp             HHHHHHHHHHHHHT-----GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-TTS-HHHHHH
T ss_pred             HHHHHHHHHhhccCC----chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCCCCChhHHHH
Confidence            788999999998763    24678888888766   2367888888776554443 668888899988765  3578877


Q ss_pred             HHHHHHH
Q psy10471        161 VLKALSF  167 (318)
Q Consensus       161 vl~al~~  167 (318)
                      ++..+..
T Consensus       580 A~~~lm~  586 (618)
T PF01347_consen  580 AYLILMR  586 (618)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7666654

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=95.80  E-value=1.2  Score=41.78  Aligned_cols=142  Identities=11%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             HHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHH----h---cCCHHHHHHHHHHHHHHhhhhcCC-
Q psy10471        146 LMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL----M---DRDLVHRQTACATIKHMALGVYGF-  216 (318)
Q Consensus       146 L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l----~---~~~~~~R~~a~~~i~~la~~~~~~-  216 (318)
                      .+..|+...++.| ..++..++.+++.+|..+.++++.|+-.+....    +   ..-|.+|...-.+++.+...+-.. 
T Consensus        76 vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l  155 (319)
T PF08767_consen   76 VLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPAL  155 (319)
T ss_dssp             HHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHH
Confidence            4457776767776 679999999999999988899987766555444    2   123899999999999998876311 


Q ss_pred             --CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh-------hhHHHhHHHHhcc--------ccccchHHH
Q psy10471        217 --GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFH--------PARKVRDVY  279 (318)
Q Consensus       217 --~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-------~~~~~~vl~~l~~--------~a~~~r~~~  279 (318)
                        -..+.+..+...+.-++++++.++-...++++..+...+..       +++..|.++.+.+        .++..-+..
T Consensus       156 ~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q  235 (319)
T PF08767_consen  156 LQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQ  235 (319)
T ss_dssp             HHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHH
Confidence              11355566667777778889999999888888887777765       5677777776632        444455566


Q ss_pred             HHHHHHhh
Q psy10471        280 WKIYNSLY  287 (318)
Q Consensus       280 w~i~~~~~  287 (318)
                      +.++..+.
T Consensus       236 ~~iL~~Lf  243 (319)
T PF08767_consen  236 SQILSNLF  243 (319)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66665554

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG0891|consensus

Probab=95.77  E-value=0.03  Score=64.27  Aligned_cols=120  Identities=19%  Similarity=0.333  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhh-chHH
Q psy10471         10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKA-HKKA   86 (318)
Q Consensus        10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d-~~~~   86 (318)
                      .....+.....-.++||+.+++..+.|.++|..+.|-.+++.++|++|..+|..+.  .++.++.+.   +.+.| .+..
T Consensus       629 ~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~---~~l~~~s~~~  705 (2341)
T KOG0891|consen  629 KLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLII---KMLQDQSSLG  705 (2341)
T ss_pred             HHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHH---HHHHHhhhhh
Confidence            33344444222358999999999999999999999999999999999999995543  256666655   55567 5667


Q ss_pred             HHHHHHHHHHHHHhhhC----HH----HHHHHHHHhhcccch-hhHHHHHHHHHH
Q psy10471         87 IRRATVNTFGYIAKAIG----PH----DVLATLLNNLKVQER-QNRVCTTVAIAI  132 (318)
Q Consensus        87 vR~~av~~lg~la~~ig----p~----~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~  132 (318)
                      .|+++.+++|++.+.-|    |+    .+++.|.+.++.+.. ..|..+...++.
T Consensus       706 rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~  760 (2341)
T KOG0891|consen  706 KRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGL  760 (2341)
T ss_pred             chhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhh
Confidence            89999999999988755    54    578888888886655 588888887763

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=95.73  E-value=0.14  Score=47.22  Aligned_cols=150  Identities=14%  Similarity=0.119  Sum_probs=84.8

Q ss_pred             CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC----C----hhhHHHHHHHHHHHhh-----hchHHHH
Q psy10471         22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV----S----AREWMRICFELLELLK-----AHKKAIR   88 (318)
Q Consensus        22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i----~----~~~~~~il~~Ll~~L~-----d~~~~vR   88 (318)
                      .+..+.+-++|.++-++.|.++.+|.-++..|..+.+..+...    .    ..-+.+.+...+-.|.     ++...+=
T Consensus       112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll  191 (282)
T PF10521_consen  112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL  191 (282)
T ss_pred             hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence            3555666677777888889899999999999999998766432    0    0111111111111111     1222222


Q ss_pred             HHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHH-HHHHHHHHhhcCcccchHHHHHHhc---CCcchHHHHHHHH
Q psy10471         89 RATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCT-TVAIAIVAETCSPFTVLPALMNEYR---VPELNVQNGVLKA  164 (318)
Q Consensus        89 ~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~-~~ai~~i~~~~~p~~vip~L~~~~~---d~~~~v~~~vl~a  164 (318)
                      .+|..++-.+.+...             .++...|... .+.+.   +.     +   |-+...   .+...+....++.
T Consensus       192 ~~ay~~L~~L~~~~~-------------~~~~~~r~~~l~~~l~---e~-----I---L~~~~~~~~~~~~~l~~~ll~~  247 (282)
T PF10521_consen  192 QAAYPALLSLLKTQE-------------NDDSNPRSTWLDKILR---EG-----I---LSSMEHESSFSYPRLRTVLLQQ  247 (282)
T ss_pred             HHHHHHHHHHHHhhc-------------cCCcccchHHHHHHHH---HH-----H---hhhceeccccCchhHHHHHHHH
Confidence            333333333332110             1111111111 11110   00     0   111111   2237788999999


Q ss_pred             HHHHHHHHccccccchhhhHHHHHHHHhcCC
Q psy10471        165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRD  195 (318)
Q Consensus       165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~  195 (318)
                      +..+++.+|..+..|+..++|.+.+.+++.+
T Consensus       248 l~~~i~~lGi~~~~hL~rii~~l~~~l~npf  278 (282)
T PF10521_consen  248 LPPIIDELGISSVKHLQRIIPVLSQILENPF  278 (282)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999887764

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=95.68  E-value=0.59  Score=47.41  Aligned_cols=173  Identities=12%  Similarity=0.062  Sum_probs=95.0

Q ss_pred             CCChHhHHHHHHhhcCCC----CHHHHHHHHHHHHHHHhhCCCCCC------hhhHHHHHHHHHHHh-hhchHHHHHHHH
Q psy10471         24 LPHLKNLVEIIEHGLVDE----QQKVQENCIDLVGRIADRGPEYVS------AREWMRICFELLELL-KAHKKAIRRATV   92 (318)
Q Consensus        24 ~P~l~~l~~~l~~~l~d~----~~~vR~aa~~~LG~la~~~~~~i~------~~~~~~il~~Ll~~L-~d~~~~vR~~av   92 (318)
                      .-+-++++..+.++++++    ++.+|.+|+.++|.++......-.      ..++.+-+...++.. ++.+...+..++
T Consensus       388 ~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L  467 (574)
T smart00638      388 RYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL  467 (574)
T ss_pred             hcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Confidence            455677888888888763    578899999999999874432111      245666555444332 224445677899


Q ss_pred             HHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy10471         93 NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI  172 (318)
Q Consensus        93 ~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l  172 (318)
                      +++|.++.    ...+..+...+..+.                                ..+..+|..++.|+..+.+..
T Consensus       468 kaLGN~g~----~~~i~~l~~~l~~~~--------------------------------~~~~~iR~~Av~Alr~~a~~~  511 (574)
T smart00638      468 KALGNAGH----PSSIKVLEPYLEGAE--------------------------------PLSTFIRLAAILALRNLAKRD  511 (574)
T ss_pred             HhhhccCC----hhHHHHHHHhcCCCC--------------------------------CCCHHHHHHHHHHHHHHHHhC
Confidence            99997664    223334443333111                                112344555566655444321


Q ss_pred             ccccccchhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471        173 GEMGKDYIYAVTPLLEDALMD--RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV  248 (318)
Q Consensus       173 g~~~~~yl~~iiP~l~~~l~~--~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i  248 (318)
                      .       ..+-+.+..++.+  .++.+|..|..++...-      .....++++...+..   |++.+|+..+...|
T Consensus       512 p-------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~------P~~~~l~~ia~~l~~---E~~~QV~sfv~S~l  573 (574)
T smart00638      512 P-------RKVQEVLLPIYLNRAEPPEVRMAAVLVLMETK------PSVALLQRIAELLNK---EPNLQVASFVYSHI  573 (574)
T ss_pred             c-------hHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC------CCHHHHHHHHHHHhh---cCcHHHHHHhHHhh
Confidence            1       2333444444433  34667766666653331      223455566555433   36677777665543

>KOG1058|consensus

Probab=95.66  E-value=0.66  Score=47.69  Aligned_cols=229  Identities=16%  Similarity=0.139  Sum_probs=127.3

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      -+.+++|.+...|.++|+-||+.|+.+++.|=..+..-  +++-+.++...|.  .++.++=+|.|.-.+-.    ++|.
T Consensus       131 Llepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L--~pDapeLi~~fL~--~e~DpsCkRNAFi~L~~----~D~E  202 (948)
T KOG1058|consen  131 LLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL--IPDAPELIESFLL--TEQDPSCKRNAFLMLFT----TDPE  202 (948)
T ss_pred             HhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh--cCChHHHHHHHHH--hccCchhHHHHHHHHHh----cCHH
Confidence            35678999999999999999999999999988764322  3444455543221  33445533333322211    2222


Q ss_pred             HHHHHHHHh------------------h-----cccch--hhHHHHHHHH-----HHHHhhcC--------cccchH---
Q psy10471        106 DVLATLLNN------------------L-----KVQER--QNRVCTTVAI-----AIVAETCS--------PFTVLP---  144 (318)
Q Consensus       106 ~~l~~Ll~~------------------L-----k~~~~--~~R~~~~~ai-----~~i~~~~~--------p~~vip---  144 (318)
                      ..+..|..+                  .     +.+.+  +.=.|...-+     +.++|..+        |..+-+   
T Consensus       203 rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~  282 (948)
T KOG1058|consen  203 RALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAAS  282 (948)
T ss_pred             HHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHH
Confidence            222221111                  1     11111  1111122222     12333333        221111   


Q ss_pred             HHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH
Q psy10471        145 ALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT  223 (318)
Q Consensus       145 ~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~  223 (318)
                      .+++.. +.++-+++..++--+..+-..-    +.-+..++=-+++++...|..+|+-+.+..-.++..-   ..++..+
T Consensus       283 ~~i~l~~kesdnnvklIvldrl~~l~~~~----~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr---Nvediv~  355 (948)
T KOG1058|consen  283 TYIDLLVKESDNNVKLIVLDRLSELKALH----EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR---NVEDIVQ  355 (948)
T ss_pred             HHHHHHHhccCcchhhhhHHHHHHHhhhh----HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc---cHHHHHH
Confidence            233333 3445566666666666554222    2233445555677788999999998888877776654   4677888


Q ss_pred             HHHHhhhhccc---CCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhc
Q psy10471        224 HLLNYVWPNIF---ETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLF  269 (318)
Q Consensus       224 hll~~l~~~i~---d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~  269 (318)
                      ++-..++..-.   |.+...|+..+.+|-..+.-...  ....|+++.-+-
T Consensus       356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fis  406 (948)
T KOG1058|consen  356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFIS  406 (948)
T ss_pred             HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhc
Confidence            87777664433   34667899999988888776653  346666666553

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.61  E-value=0.85  Score=42.32  Aligned_cols=108  Identities=13%  Similarity=0.138  Sum_probs=74.4

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhh-------HHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSARE-------WMRICFE   75 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~-------~~~il~~   75 (318)
                      -|..|++|+|-.+....    ....+-++.+...++..++.||..|++++-.+.-.-| +..+...       -..+...
T Consensus        43 vR~~al~cLGl~~Lld~----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~  118 (298)
T PF12719_consen   43 VRELALKCLGLCCLLDK----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKI  118 (298)
T ss_pred             HHHHHHHHHHHHHHhCh----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHH
Confidence            47789999999988664    3444555666655555689999999999999987655 2222111       2334444


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHH--hhhCH-HHHHHHHHHhh
Q psy10471         76 LLELLKAHKKAIRRATVNTFGYIA--KAIGP-HDVLATLLNNL  115 (318)
Q Consensus        76 Ll~~L~d~~~~vR~~av~~lg~la--~~igp-~~~l~~Ll~~L  115 (318)
                      +.+.+.+.++.+|..|+++++.+-  ..+.+ ..++..|+-..
T Consensus       119 l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~y  161 (298)
T PF12719_consen  119 LTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLY  161 (298)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            557778878889999999998843  34555 66777665544

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=95.42  E-value=0.029  Score=35.71  Aligned_cols=30  Identities=20%  Similarity=0.173  Sum_probs=27.0

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIAD   58 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~   58 (318)
                      ..+|.++.+|++.++.+|+.|+++|+.++.
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            367889999999999999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0392|consensus

Probab=95.36  E-value=0.26  Score=53.13  Aligned_cols=170  Identities=12%  Similarity=0.013  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh---ch--HHHHHHHHHHHH-HHHhhhCH-HHHHHHHHHhhccc
Q psy10471         46 QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA---HK--KAIRRATVNTFG-YIAKAIGP-HDVLATLLNNLKVQ  118 (318)
Q Consensus        46 R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d---~~--~~vR~~av~~lg-~la~~igp-~~~l~~Ll~~Lk~~  118 (318)
                      |+.|-.+|-.+++..|..+ ...++.+..-|+.-|++   .+  .--+....+++. .....+-| ...++.++..++..
T Consensus       750 rrgael~L~~l~~~fg~sl-~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l~~~~~~l~~l~~~~~s~  828 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSL-AAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFLHPLGSLLPRLFFFVRSI  828 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHH-HHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhhhhhhhhhhHHHHhcccc
Confidence            8888899999998777544 22232232333344443   12  112333333332 11112223 12466677777777


Q ss_pred             chhhHHHHHHHHHHHHhhcC-c--ccchHHHHHHhcCCcchH-HHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC
Q psy10471        119 ERQNRVCTTVAIAIVAETCS-P--FTVLPALMNEYRVPELNV-QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR  194 (318)
Q Consensus       119 ~~~~R~~~~~ai~~i~~~~~-p--~~vip~L~~~~~d~~~~v-~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~  194 (318)
                      ....|++.+++|+..+.... -  ..++..++-.+.+.+.-+ |.++...+..+...++....+|.+.++|.+.+.+.+.
T Consensus       829 ~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~  908 (1549)
T KOG0392|consen  829 HIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQ  908 (1549)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccc
Confidence            77899999999998775432 1  245555555556655444 4566677777777777778899999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhhhcCC
Q psy10471        195 DLVHRQTACATIKHMALGVYGF  216 (318)
Q Consensus       195 ~~~~R~~a~~~i~~la~~~~~~  216 (318)
                      ...+|..+....+.+.+.+...
T Consensus       909 ~d~vR~aat~~fa~lip~~~le  930 (1549)
T KOG0392|consen  909 IDSVREAATKVFAKLIPLLPLE  930 (1549)
T ss_pred             hHHHHHHHHHHHHHHhcccccc
Confidence            9999999999999888776533

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=95.29  E-value=0.13  Score=39.25  Aligned_cols=81  Identities=23%  Similarity=0.319  Sum_probs=58.9

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHH
Q psy10471         73 CFELLELLKAHKKAIRRATVNTFGYIAKAIG-PH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM  147 (318)
Q Consensus        73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~  147 (318)
                      +...+..++|+...+|..++..+..+.+.-. +.    .++..++..|++++.=+...+++++..+++.. |..++|.|+
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-p~~vl~~L~   83 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-PDEVLPILL   83 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-hHHHHHHHH
Confidence            4455677788888899999999999887655 32    45666777778777656666677776666655 567888888


Q ss_pred             HHhcCCc
Q psy10471        148 NEYRVPE  154 (318)
Q Consensus       148 ~~~~d~~  154 (318)
                      ..|.++.
T Consensus        84 ~~y~~~~   90 (92)
T PF10363_consen   84 DEYADPS   90 (92)
T ss_pred             HHHhCcc
Confidence            8887653

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.064  Score=53.29  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=75.5

Q ss_pred             hHHHHHHhh-cCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHH
Q psy10471         29 NLVEIIEHG-LVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHD  106 (318)
Q Consensus        29 ~l~~~l~~~-l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~  106 (318)
                      .++..+++. .+|.+..|||||.-+||-+|-.-.+         .+...++.|.+ .++.||...-.++|..++..|...
T Consensus       551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~  621 (926)
T COG5116         551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV  621 (926)
T ss_pred             hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH
Confidence            455666665 7899999999999999988754333         22233455566 789999999999999998899876


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc
Q psy10471        107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP  139 (318)
Q Consensus       107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p  139 (318)
                      .++.|-...++..-=+|....+|.++|--.|.|
T Consensus       622 a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         622 ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence            655555555555556888899999888766664

>KOG1020|consensus

Probab=95.16  E-value=0.67  Score=50.95  Aligned_cols=143  Identities=12%  Similarity=0.174  Sum_probs=89.9

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI  102 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i  102 (318)
                      +..-.+..+..|+-.+..+.+.+|.-|+++|+++++.-+....-++   +-..+-..+.|+..+||.+|++-+|...-. 
T Consensus       810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~d---vq~~Vh~R~~DssasVREAaldLvGrfvl~-  885 (1692)
T KOG1020|consen  810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPD---VQEAVHGRLNDSSASVREAALDLVGRFVLS-  885 (1692)
T ss_pred             HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHH---HHHHHHHhhccchhHHHHHHHHHHhhhhhc-
Confidence            3334455666677777777799999999999999997664432233   333344777889999999999999975532 


Q ss_pred             CHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchH----HHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471        103 GPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP----ALMNEYRVPELNVQNGVLKALSFLF  169 (318)
Q Consensus       103 gp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip----~L~~~~~d~~~~v~~~vl~al~~i~  169 (318)
                      .|.   +.-..+.+...|..-.+|.=+..-+--+++...-|..+|    -++..-.|+|.+++.-+++.+..++
T Consensus       886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW  959 (1692)
T KOG1020|consen  886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW  959 (1692)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence            222   223334444444433455544443333444333343333    3555667888888888888888765

>KOG1061|consensus

Probab=95.14  E-value=0.83  Score=46.98  Aligned_cols=157  Identities=17%  Similarity=0.067  Sum_probs=98.5

Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHh-hhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCcccchHHHHHHhc
Q psy10471         77 LELLKAHKKAIRRATVNTFGYIAK-AIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSPFTVLPALMNEYR  151 (318)
Q Consensus        77 l~~L~d~~~~vR~~av~~lg~la~-~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p~~vip~L~~~~~  151 (318)
                      +...+|+++-+|..|+++.|.+.- .+.. .+...+.+.+++.+--+|..++...+...    +.|.+..+++.|-+.+.
T Consensus        92 ~kD~~d~np~iR~lAlrtm~~l~v~~i~e-y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~  170 (734)
T KOG1061|consen   92 LKDCEDPNPLIRALALRTMGCLRVDKITE-YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS  170 (734)
T ss_pred             hccCCCCCHHHHHHHhhceeeEeehHHHH-HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence            334444788899999999987542 1112 35677888888777667777777666543    55667789999999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh
Q psy10471        152 VPELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW  230 (318)
Q Consensus       152 d~~~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~  230 (318)
                      |+++.|-..++.++..|.+.-.+ ......++++-.+...++.++..-+-...   ..++......  +.....+..++.
T Consensus       171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL---~~l~~y~p~d--~~ea~~i~~r~~  245 (734)
T KOG1061|consen  171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFIL---DCLAEYVPKD--SREAEDICERLT  245 (734)
T ss_pred             CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHH---HHHHhcCCCC--chhHHHHHHHhh
Confidence            99999999999999999987532 22222355666666666666554443332   2333333211  122334555555


Q ss_pred             hcccCCChH
Q psy10471        231 PNIFETSPH  239 (318)
Q Consensus       231 ~~i~d~~~~  239 (318)
                      |.++..++.
T Consensus       246 p~Lqh~n~a  254 (734)
T KOG1061|consen  246 PRLQHANSA  254 (734)
T ss_pred             hhhccCCcc
Confidence            555555443

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.13  E-value=3.7  Score=40.37  Aligned_cols=240  Identities=11%  Similarity=0.169  Sum_probs=128.3

Q ss_pred             cCcCCChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-----chHHHHHHH
Q psy10471         21 CAILPHLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-----HKKAIRRAT   91 (318)
Q Consensus        21 ~~~~P~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-----~~~~vR~~a   91 (318)
                      .++.|++++++.-+...++-    +|+.+-++..+.+..+-+...++     ...++..|.++++.     .++.-=+-.
T Consensus        18 ~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~-----~~~il~~L~~il~~v~kNPsnP~FnHyl   92 (435)
T PF03378_consen   18 ADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPI-----AVEILQHLTAILKEVSKNPSNPRFNHYL   92 (435)
T ss_dssp             GGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGG-----HHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence            36899999999998776643    35666666666666555544443     33344444444433     344444557


Q ss_pred             HHHHHHHHhhhC---HH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC--c----c-cchHHHHHHhcCC-
Q psy10471         92 VNTFGYIAKAIG---PH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--P----F-TVLPALMNEYRVP-  153 (318)
Q Consensus        92 v~~lg~la~~ig---p~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~--p----~-~vip~L~~~~~d~-  153 (318)
                      .+++|.+.+...   |.       .+++.+...|..+-...---+-+-++.+-+...  +    | .++|.|+.----. 
T Consensus        93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~  172 (435)
T PF03378_consen   93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWER  172 (435)
T ss_dssp             HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGS
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhcc
Confidence            777777766533   32       234444445542111111112222233323322  1    2 6667666532211 


Q ss_pred             cchHHHHHHHHHHHHHHHHcccc--ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471        154 ELNVQNGVLKALSFLFEYIGEMG--KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP  231 (318)
Q Consensus       154 ~~~v~~~vl~al~~i~~~lg~~~--~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~  231 (318)
                      ..++ .+++..+..+++--+..+  .+++..++-.+.+++..+...  ..+..+++.+...+.....+..+.++...++.
T Consensus       173 ~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~  249 (435)
T PF03378_consen  173 RGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT  249 (435)
T ss_dssp             TTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred             CCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence            1233 556666666665544433  367888999999999765422  33567888888887644445555565555544


Q ss_pred             cccC-CChHHHHHHHHHHHHHHHHcChhhH---HHhHHHHh
Q psy10471        232 NIFE-TSPHLVQAFMDAVEGLRVALGPVRI---LQYVLQGL  268 (318)
Q Consensus       232 ~i~d-~~~~vr~~ii~~i~~i~~alG~~~~---~~~vl~~l  268 (318)
                      -+.. ..+...+..+--++-++...|++.+   ...+.||+
T Consensus       250 RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~gl  290 (435)
T PF03378_consen  250 RLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGL  290 (435)
T ss_dssp             HHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTH
T ss_pred             HHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCc
Confidence            4432 4566777777778888888888763   33444555

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2160|consensus

Probab=94.94  E-value=0.86  Score=42.94  Aligned_cols=99  Identities=17%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             hhhhHHHHHHHHHHHhccC-cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHhh
Q psy10471          4 DKNLGIKIVQQIAILMGCA-ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELLK   81 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L~   81 (318)
                      +|+-++.-|.+++.-+..+ ..=.+..+.+++. .+++.++.+|+.|++.||.++++.+.... .-+.- -+..|+.+++
T Consensus        99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-~L~~Ll~~ls  176 (342)
T KOG2160|consen   99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG-ALSKLLKILS  176 (342)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-cHHHHHHHHc
Confidence            5666666666666655442 3444556666666 99999999999999999999998874221 11111 2334566666


Q ss_pred             h-chHHHHHHHHHHHHHHHhhhCH
Q psy10471         82 A-HKKAIRRATVNTFGYIAKAIGP  104 (318)
Q Consensus        82 d-~~~~vR~~av~~lg~la~~igp  104 (318)
                      . +...+|..|+-+++.+...--|
T Consensus       177 ~~~~~~~r~kaL~AissLIRn~~~  200 (342)
T KOG2160|consen  177 SDDPNTVRTKALFAISSLIRNNKP  200 (342)
T ss_pred             cCCCchHHHHHHHHHHHHHhcCcH
Confidence            6 4556888888888877765544

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=94.83  E-value=2  Score=44.78  Aligned_cols=146  Identities=15%  Similarity=0.142  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHhhcC----------cccchHHHHHHhcCC--cchHHHHHHHHHHHHHHHHccccccchh--hhHHHHHHH
Q psy10471        125 CTTVAIAIVAETCS----------PFTVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYIY--AVTPLLEDA  190 (318)
Q Consensus       125 ~~~~ai~~i~~~~~----------p~~vip~L~~~~~d~--~~~v~~~vl~al~~i~~~lg~~~~~yl~--~iiP~l~~~  190 (318)
                      ..+.++|+++.--.          .+.++|-+.+.+...  +.++...++..++.++  ....|...+-  .+++.+..+
T Consensus       507 ~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla--~d~~~A~lL~~sgli~~Li~L  584 (708)
T PF05804_consen  507 FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA--SDPECAPLLAKSGLIPTLIEL  584 (708)
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH--CCHHHHHHHHhCChHHHHHHH
Confidence            45666676663221          257899999988654  2334444444444433  3556777773  689999999


Q ss_pred             HhcC--C-HHHHHHHHHHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHH
Q psy10471        191 LMDR--D-LVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVL  265 (318)
Q Consensus       191 l~~~--~-~~~R~~a~~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl  265 (318)
                      ++..  | ..+-|.+. +...+...  ....+..+  .++..|+++.+.|.|+++|+..=.++.-|+..=.         
T Consensus       585 L~~kqeDdE~VlQil~-~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~---------  652 (708)
T PF05804_consen  585 LNAKQEDDEIVLQILY-VFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE---------  652 (708)
T ss_pred             HHhhCchHHHHHHHHH-HHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH---------
Confidence            9643  2 23333222 22222111  01111111  2356677888889999999987777776654321         


Q ss_pred             HHhccccccchHHHHHHHHHhhc
Q psy10471        266 QGLFHPARKVRDVYWKIYNSLYI  288 (318)
Q Consensus       266 ~~l~~~a~~~r~~~w~i~~~~~~  288 (318)
                          .-++|+|....+.+|+-+.
T Consensus       653 ----~w~~ri~~~kF~~hN~~WL  671 (708)
T PF05804_consen  653 ----EWAERIRREKFRWHNAQWL  671 (708)
T ss_pred             ----HHHHHhhHHHHHHHHHHHH
Confidence                1144666666666766653

>KOG0567|consensus

Probab=94.58  E-value=0.33  Score=44.02  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             HHHHhhcCCCC-HHH-HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         32 EIIEHGLVDEQ-QKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        32 ~~l~~~l~d~~-~~v-R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      .-+-..+.|.+ |.+ |+.|.=.|.++.   ++.        -+..+.+-+.+++.-.|+++--.|||+...    ..++
T Consensus       157 ~~lr~~lld~t~~l~~Ry~amF~LRn~g---~Ee--------aI~al~~~l~~~SalfrhEvAfVfGQl~s~----~ai~  221 (289)
T KOG0567|consen  157 HELRAELLDETKPLFERYRAMFYLRNIG---TEE--------AINALIDGLADDSALFRHEVAFVFGQLQSP----AAIP  221 (289)
T ss_pred             HHHHHHHHhcchhHHHHHhhhhHhhccC---cHH--------HHHHHHHhcccchHHHHHHHHHHHhhccch----hhhH
Confidence            33444445543 555 666655554432   111        122244556666666888888888887652    3567


Q ss_pred             HHHHhhcccch--hhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHH
Q psy10471        110 TLLNNLKVQER--QNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALS  166 (318)
Q Consensus       110 ~Ll~~Lk~~~~--~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~  166 (318)
                      .|.+.|.+...  -+|...+.|+|.|++.    ..++.|-.-..|+++-++.+..-+++
T Consensus       222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~e----~~~~vL~e~~~D~~~vv~esc~vald  276 (289)
T KOG0567|consen  222 SLIKVLLDETEHPMVRHEAAEALGAIADE----DCVEVLKEYLGDEERVVRESCEVALD  276 (289)
T ss_pred             HHHHHHHhhhcchHHHHHHHHHHHhhcCH----HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            77777776555  4788888888887743    22444555557877777766555554

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.56  E-value=2.5  Score=42.68  Aligned_cols=225  Identities=12%  Similarity=0.165  Sum_probs=117.9

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--HHHHHH
Q psy10471         34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLATL  111 (318)
Q Consensus        34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--~~l~~L  111 (318)
                      |+...+ .++.+.+-|+.-|+.+....++.     -..-+..++++..|....||..|++.+-.+++....+  .+.+.|
T Consensus        28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l-----~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL  101 (556)
T PF05918_consen   28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDL-----QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVL  101 (556)
T ss_dssp             HHHGGG-S-HHHHHHHHHHHHHHHCC-GGG-----HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHH
T ss_pred             HHHHcc-CCHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHH
Confidence            444555 36888888888888887754432     2234455667778988899999999999999865433  577788


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc---CCcchHHHHHHHHHHHHHHHHccccccch-------h
Q psy10471        112 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR---VPELNVQNGVLKALSFLFEYIGEMGKDYI-------Y  181 (318)
Q Consensus       112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~---d~~~~v~~~vl~al~~i~~~lg~~~~~yl-------~  181 (318)
                      ...|..++...+.+|-.+++.+... .|-..+.++.+...   ..+..++.-+++-|..-...++   ..++       .
T Consensus       102 ~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~---~~~~~p~~E~e~  177 (556)
T PF05918_consen  102 VQLLQTDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLK---PELLTPQKEMEE  177 (556)
T ss_dssp             HHHTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS----TTTS---HHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCc---HHHhhchHHHHH
Confidence            8888877777777777777654322 12233333444333   3345567766665543333333   2233       2


Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh-----hcccC-CChHHHHHHHHHHHHHHHHc
Q psy10471        182 AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW-----PNIFE-TSPHLVQAFMDAVEGLRVAL  255 (318)
Q Consensus       182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~-----~~i~d-~~~~vr~~ii~~i~~i~~al  255 (318)
                      .|+-.+..++.|-...-.......+..+-..-. ..-.+-.+.+.+.+.     +.-|+ .+++....++.++.....-.
T Consensus       178 ~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~-~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f  256 (556)
T PF05918_consen  178 FIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGG-KQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF  256 (556)
T ss_dssp             HHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhCccccc-cCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence            366677788877677777777777766633110 111222233444443     22233 23555555666555532222


Q ss_pred             ----ChhhHHHhHHHHhc
Q psy10471        256 ----GPVRILQYVLQGLF  269 (318)
Q Consensus       256 ----G~~~~~~~vl~~l~  269 (318)
                          ....|..|+..-++
T Consensus       257 s~~v~Sskfv~y~~~kvl  274 (556)
T PF05918_consen  257 SRGVSSSKFVNYMCEKVL  274 (556)
T ss_dssp             BTTB--HHHHHHHHHHTC
T ss_pred             cCCCChHHHHHHHHHHhc
Confidence                22345566655553

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=94.43  E-value=3  Score=42.64  Aligned_cols=163  Identities=17%  Similarity=0.245  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC----------H------HHHHHHHHHhhc----ccchhhHHH
Q psy10471         67 REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG----------P------HDVLATLLNNLK----VQERQNRVC  125 (318)
Q Consensus        67 ~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig----------p------~~~l~~Ll~~Lk----~~~~~~R~~  125 (318)
                      ++++..+..|++.-.. +++.+|..|+-++|.+....-          |      .++++.+.+.|+    .+++..+..
T Consensus       430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  509 (618)
T PF01347_consen  430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV  509 (618)
T ss_dssp             HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence            4444444433322122 455688999999988766421          1      134445555554    223355666


Q ss_pred             HHHHHHHHHhhcCcccchHHHHHHhcCC---cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC--CHHHHH
Q psy10471        126 TTVAIAIVAETCSPFTVLPALMNEYRVP---ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR--DLVHRQ  200 (318)
Q Consensus       126 ~~~ai~~i~~~~~p~~vip~L~~~~~d~---~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~--~~~~R~  200 (318)
                      ...|+|.++.   | .++|.+.....+.   +..+|..+++|+..+.+       .+-..+.+.+..++.+.  +..+|-
T Consensus       510 ~LkaLgN~g~---~-~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~-------~~~~~v~~~l~~I~~n~~e~~EvRi  578 (618)
T PF01347_consen  510 YLKALGNLGH---P-ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK-------HCPEKVREILLPIFMNTTEDPEVRI  578 (618)
T ss_dssp             HHHHHHHHT----G-GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG-------T-HHHHHHHHHHHHH-TTS-HHHHH
T ss_pred             HHHHhhccCC---c-hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh-------cCcHHHHHHHHHHhcCCCCChhHHH
Confidence            6777776543   2 5777777777665   45667778777764422       12235667777777544  478998


Q ss_pred             HHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHH
Q psy10471        201 TACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE  249 (318)
Q Consensus       201 ~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~  249 (318)
                      .|..++-..-      .....++++..+++   .|++++|+..+...|+
T Consensus       579 aA~~~lm~~~------P~~~~l~~i~~~l~---~E~~~QV~sfv~S~Lk  618 (618)
T PF01347_consen  579 AAYLILMRCN------PSPSVLQRIAQSLW---NEPSNQVASFVYSHLK  618 (618)
T ss_dssp             HHHHHHHHT---------HHHHHHHHHHHT---T-S-HHHHHHHHHHHH
T ss_pred             HHHHHHHhcC------CCHHHHHHHHHHHh---hCchHHHHHHHHHhcC
Confidence            8888774432      23356677766653   3588899988877663

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0414|consensus

Probab=94.25  E-value=0.71  Score=49.61  Aligned_cols=121  Identities=10%  Similarity=0.214  Sum_probs=79.4

Q ss_pred             HhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh-h-CH
Q psy10471         28 KNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA-I-GP  104 (318)
Q Consensus        28 ~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~-i-gp  104 (318)
                      ..=+|.+...+. .++|.+|.++.-++|.+|=..+..+  +.|-+-+.   ..|.|.+..||+.|+-++..+.-+ + --
T Consensus       959 es~l~llftimeksp~p~IRsN~VvalgDlav~fpnli--e~~T~~Ly---~rL~D~~~~vRkta~lvlshLILndmiKV 1033 (1251)
T KOG0414|consen  959 ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI--EPWTEHLY---RRLRDESPSVRKTALLVLSHLILNDMIKV 1033 (1251)
T ss_pred             HHHHHHHHHHHhcCCCceeeecchheccchhhhccccc--chhhHHHH---HHhcCccHHHHHHHHHHHHHHHHhhhhHh
Confidence            344555655554 6889999999999999998877764  56777655   888999999999999998775421 1 00


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-ccchHHHHHHhcCC
Q psy10471        105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVP  153 (318)
Q Consensus       105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-~~vip~L~~~~~d~  153 (318)
                      .-.+......|-|++.+.|-++=.-+..++.+..+ |.++|-++..+.|+
T Consensus      1034 KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1034 KGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred             cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccC
Confidence            00133344455556555554444333445555554 57777777777665

>KOG2025|consensus

Probab=94.22  E-value=2  Score=44.14  Aligned_cols=90  Identities=20%  Similarity=0.296  Sum_probs=63.6

Q ss_pred             CchhhhHHHHHHHHHHHhcc-CcCCC--hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHH
Q psy10471          2 SSDKNLGIKIVQQIAILMGC-AILPH--LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE-YVSAREWMRICFELL   77 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~-~~~P~--l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~-~i~~~~~~~il~~Ll   77 (318)
                      |.+|..=-+++.-||.++|+ .-.|-  -+.|...+..-+.|..|.||..|+.+|.++-+..++ ..      |+...+.
T Consensus        96 skdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~  169 (892)
T KOG2025|consen   96 SKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC------PVVNLLK  169 (892)
T ss_pred             CcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc------cHHHHHH
Confidence            45566666788889998886 23332  246777788889999999999999999999864442 22      2333333


Q ss_pred             HHh-hhchHHHHHHHHHHHHH
Q psy10471         78 ELL-KAHKKAIRRATVNTFGY   97 (318)
Q Consensus        78 ~~L-~d~~~~vR~~av~~lg~   97 (318)
                      .++ +|+++.|||+|+..+..
T Consensus       170 ~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  170 DLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             HHHhcCCcHHHHHHHHHhhcc
Confidence            333 55899999999988754

>KOG2062|consensus

Probab=94.13  E-value=2.7  Score=43.36  Aligned_cols=97  Identities=16%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             cchHHHHHH-hcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCc
Q psy10471        141 TVLPALMNE-YRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGC  218 (318)
Q Consensus       141 ~vip~L~~~-~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~  218 (318)
                      .++..|+.. ..|.+..|+++++-++.+++-.      +  |..+|.....+. +-+++||-.++-+++.-   |.+.|.
T Consensus       554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~------d--p~~~~s~V~lLses~N~HVRyGaA~ALGIa---CAGtG~  622 (929)
T KOG2062|consen  554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------D--PEQLPSTVSLLSESYNPHVRYGAAMALGIA---CAGTGL  622 (929)
T ss_pred             hhHHHhhcccccccchHHHHHHHHHheeeEec------C--hhhchHHHHHHhhhcChhhhhhHHHHHhhh---hcCCCc
Confidence            555556555 4667777777777766665421      0  344455555554 34577777777666433   333344


Q ss_pred             hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      .+.+.-    +-|...|+..-|||.++-++.-|-
T Consensus       623 ~eAi~l----Lepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  623 KEAINL----LEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             HHHHHH----HhhhhcChHHHHHHHHHHHHHHHH
Confidence            443322    234455666777776666655553

>KOG2137|consensus

Probab=93.83  E-value=6  Score=40.68  Aligned_cols=172  Identities=20%  Similarity=0.227  Sum_probs=111.0

Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHHHHHHH----HHHhhcccchhhHHHHHHHHHHHHhhcC-cc---cchHHHHHHh-cC
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPHDVLAT----LLNNLKVQERQNRVCTTVAIAIVAETCS-PF---TVLPALMNEY-RV  152 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~~~l~~----Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-p~---~vip~L~~~~-~d  152 (318)
                      .....++..-++..-.|.+++.+.++.+.    |...+++.+.+..-.+.+.+..+++... ++   .++|.+.+.. +.
T Consensus       361 ~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~t  440 (700)
T KOG2137|consen  361 SDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKT  440 (700)
T ss_pred             CCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcc
Confidence            35666888888888888888888755444    4445556665555566666666665443 33   7899998865 56


Q ss_pred             CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhc
Q psy10471        153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPN  232 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~  232 (318)
                      ....++..++-|+..+.+.+..  ..-++++ +.+....+.+++.+.-....+...++.+.. .|.+-...|.+|++|+.
T Consensus       441 t~~~vkvn~L~c~~~l~q~lD~--~~v~d~~-lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~-~g~ev~~~~VlPlli~l  516 (700)
T KOG2137|consen  441 TNLYVKVNVLPCLAGLIQRLDK--AAVLDEL-LPILKCIKTRDPAIVMGFLRIYEALALIIY-SGVEVMAENVLPLLIPL  516 (700)
T ss_pred             cchHHHHHHHHHHHHHHHHHHH--HHhHHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHhhcc-cceeeehhhhhhhhhhh
Confidence            6778888888888888877763  1122444 445556667777777666777767666553 23455667789998887


Q ss_pred             ccCCChHHHH--HHHHHHHHHHHHcCh
Q psy10471        233 IFETSPHLVQ--AFMDAVEGLRVALGP  257 (318)
Q Consensus       233 i~d~~~~vr~--~ii~~i~~i~~alG~  257 (318)
                      -..+.-...+  ..+..+..+..++..
T Consensus       517 s~~~~L~~~Qy~~~m~~i~~ml~~ie~  543 (700)
T KOG2137|consen  517 SVAPSLNGEQYNKYMSEIRLMLSAIEK  543 (700)
T ss_pred             hhcccccHHHHHHHHHHHHHHHhhhhH
Confidence            6554433333  245555555555543

>KOG1020|consensus

Probab=93.64  E-value=1.3  Score=48.98  Aligned_cols=110  Identities=15%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             hhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHH
Q psy10471         67 REWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPAL  146 (318)
Q Consensus        67 ~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L  146 (318)
                      ..+.+.+..++..|..+...+|--|++++..+.+ .+|..+...     .++                         -+.
T Consensus       812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive-~Dp~vL~~~-----dvq-------------------------~~V  860 (1692)
T KOG1020|consen  812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVE-ADPSVLSRP-----DVQ-------------------------EAV  860 (1692)
T ss_pred             HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHh-cChHhhcCH-----HHH-------------------------HHH
Confidence            4455666666777788888999999999999986 777533111     000                         013


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471        147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMAL  211 (318)
Q Consensus       147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~  211 (318)
                      ...+.|...+||.+++..++.+.-+...-..+|+.+|    ..-+.|....||+.++..+..+..
T Consensus       861 h~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i----~erIlDtgvsVRKRvIKIlrdic~  921 (1692)
T KOG1020|consen  861 HGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQI----IERILDTGVSVRKRVIKILRDICE  921 (1692)
T ss_pred             HHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHH----HhhcCCCchhHHHHHHHHHHHHHH
Confidence            3445566666777777766655544333233333333    222335566667666666655544

>KOG4413|consensus

Probab=93.58  E-value=0.22  Score=46.52  Aligned_cols=94  Identities=15%  Similarity=0.183  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH----HHHHhhhhccc
Q psy10471        159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT----HLLNYVWPNIF  234 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~----hll~~l~~~i~  234 (318)
                      +-.+.++...|++..+  ....++++|.++.=+.+.|.+++..++..++++.+.+..-...+...    .+++.++.+|.
T Consensus        61 tlcVscLERLfkakeg--ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg  138 (524)
T KOG4413|consen   61 TLCVSCLERLFKAKEG--AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG  138 (524)
T ss_pred             hhHHHHHHHHHhhccc--hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence            4478888999987543  44558899999999999999999999999999988774212222221    37778888999


Q ss_pred             CCChHHHHHHHHHHHHHHHH
Q psy10471        235 ETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       235 d~~~~vr~~ii~~i~~i~~a  254 (318)
                      .++.+|-+++++++.+++..
T Consensus       139 geddeVAkAAiesikrialf  158 (524)
T KOG4413|consen  139 GEDDEVAKAAIESIKRIALF  158 (524)
T ss_pred             CCcHHHHHHHHHHHHHHHhc
Confidence            99999999999999998753

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=93.48  E-value=0.091  Score=33.91  Aligned_cols=42  Identities=21%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10471         10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLV   53 (318)
Q Consensus        10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~L   53 (318)
                      |+|+++.......+  .-+.+...+...+.|++|.||++|+.+|
T Consensus         1 k~l~~iv~~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    1 KALSSIVEKDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             ChHHHHHhcCcccc--chHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            35666666332211  1247888899999999999999998764

>KOG1077|consensus

Probab=93.39  E-value=11  Score=38.97  Aligned_cols=102  Identities=17%  Similarity=0.245  Sum_probs=76.4

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471         34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATL  111 (318)
Q Consensus        34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~L  111 (318)
                      +-..+.+..+..|.-|+.++-.+|++.. .++ .+.+...++   ..|+. ...++|+-|++-+...++.-...++...|
T Consensus       334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~-s~davK~h~d~Ii---~sLkterDvSirrravDLLY~mcD~~Nak~IV~el  409 (938)
T KOG1077|consen  334 LGQFLSHRETNIRYLALESMCKLASSEF-SIDAVKKHQDTII---NSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAEL  409 (938)
T ss_pred             HHHHhhcccccchhhhHHHHHHHHhccc-hHHHHHHHHHHHH---HHhccccchHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence            4455666667777777777777776632 222 344444444   66684 67899999999999988766667788889


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhcCc
Q psy10471        112 LNNLKVQERQNRVCTTVAIAIVAETCSP  139 (318)
Q Consensus       112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p  139 (318)
                      +..|...+.+.|-..+.-+++++|++.+
T Consensus       410 LqYL~tAd~sireeivlKvAILaEKyAt  437 (938)
T KOG1077|consen  410 LQYLETADYSIREEIVLKVAILAEKYAT  437 (938)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence            9999888889999999999999999876

>KOG1293|consensus

Probab=93.35  E-value=4.4  Score=41.22  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCch
Q psy10471        141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCE  219 (318)
Q Consensus       141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~  219 (318)
                      .++..+.+.+.||+..++..++.++.+++--.|+-=..|+ ...+-.+...+.+.+.+.|+.+.+++.++.=+++...+.
T Consensus       419 dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~  498 (678)
T KOG1293|consen  419 DVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKF  498 (678)
T ss_pred             hhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHH
Confidence            7888899999999999999999999988766554223355 457788888889999999999999999997666422222


Q ss_pred             hHHHH-HHHhhhhcccCCChHHHHHHHHHH
Q psy10471        220 DALTH-LLNYVWPNIFETSPHLVQAFMDAV  248 (318)
Q Consensus       220 ~~i~h-ll~~l~~~i~d~~~~vr~~ii~~i  248 (318)
                      ....+ ..+.+...+.|++..|+....+.+
T Consensus       499 ~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll  528 (678)
T KOG1293|consen  499 QLLAKIPANLILDLINDPDWAVQEQCFQLL  528 (678)
T ss_pred             HHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence            22222 223334555667777777655444

>KOG4524|consensus

Probab=93.13  E-value=8.3  Score=41.01  Aligned_cols=86  Identities=21%  Similarity=0.199  Sum_probs=61.2

Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc----CCChHHHHHHHHHHHHHHHHcCh
Q psy10471        182 AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF----ETSPHLVQAFMDAVEGLRVALGP  257 (318)
Q Consensus       182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~----d~~~~vr~~ii~~i~~i~~alG~  257 (318)
                      +|+-.-++++.+.+...|-.+.+++..-...++  .+++.+-.+.+-.||.+-    +.++-+-..++.+++.++..=|+
T Consensus       803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La--~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgD  880 (1014)
T KOG4524|consen  803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLA--TYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGD  880 (1014)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHh--ccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhh
Confidence            455666667778888888888888765555553  455655555555666654    46777888899999999999886


Q ss_pred             ---hhHHHhHHHHhc
Q psy10471        258 ---VRILQYVLQGLF  269 (318)
Q Consensus       258 ---~~~~~~vl~~l~  269 (318)
                         ..+..-+||-+-
T Consensus       881 Fv~sR~l~dvlP~l~  895 (1014)
T KOG4524|consen  881 FVASRFLEDVLPWLK  895 (1014)
T ss_pred             HHHHHHHHHHHHHHH
Confidence               557777777763

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=93.07  E-value=2.2  Score=40.56  Aligned_cols=88  Identities=13%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHH----ccccccchhhhHHHHHHHHhcC----------CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471        162 LKALSFLFEYI----GEMGKDYIYAVTPLLEDALMDR----------DLVHRQTACATIKHMALGVYGFGCEDALTHLLN  227 (318)
Q Consensus       162 l~al~~i~~~l----g~~~~~yl~~iiP~l~~~l~~~----------~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~  227 (318)
                      +..++.+..++    .....+|+++++|.+..++..+          .-.+|..++..++.++...... +.....++..
T Consensus       234 L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~  312 (343)
T cd08050         234 LIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITR  312 (343)
T ss_pred             HHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHH
Confidence            34444444443    3357899999999999998322          2488999999999888776422 2233334443


Q ss_pred             hhhhcccCCChHHHHHHHHHHHHH
Q psy10471        228 YVWPNIFETSPHLVQAFMDAVEGL  251 (318)
Q Consensus       228 ~l~~~i~d~~~~vr~~ii~~i~~i  251 (318)
                      .+...+.|+...+ .+.-+++..+
T Consensus       313 tl~k~l~d~~~~~-~~~YGAi~GL  335 (343)
T cd08050         313 TLLKALLDPKKPL-TTHYGAIVGL  335 (343)
T ss_pred             HHHHHHcCCCCCc-chhhHHHHHH
Confidence            4344444443332 2244455444

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG0413|consensus

Probab=92.62  E-value=0.46  Score=50.09  Aligned_cols=131  Identities=10%  Similarity=0.108  Sum_probs=92.6

Q ss_pred             HHHhhcCc-----ccchHHHHHHhcCCc-chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHH
Q psy10471        132 IVAETCSP-----FTVLPALMNEYRVPE-LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACAT  205 (318)
Q Consensus       132 ~i~~~~~p-----~~vip~L~~~~~d~~-~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~  205 (318)
                      +++..|-.     -..||.|.+++.-++ ..+++.++=+++.+|-....+.    ..-+|.+-..+.|+++.+|++...+
T Consensus       954 TlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~----d~YiP~I~~~L~Dp~~iVRrqt~il 1029 (1529)
T KOG0413|consen  954 TLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMT----DRYIPMIAASLCDPSVIVRRQTIIL 1029 (1529)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHH----HHhhHHHHHHhcCchHHHHHHHHHH
Confidence            45556653     258999999997765 4667766666666655433333    4455888899999999999999999


Q ss_pred             HHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc
Q psy10471        206 IKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH  270 (318)
Q Consensus       206 i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~  270 (318)
                      ++.|.+.--..-.-+.+.    +++-.+.|.++++|.-.=-.+..+-..=.|-+|-+++..-++|
T Consensus      1030 L~rLLq~~~vKw~G~Lf~----Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ 1090 (1529)
T KOG0413|consen 1030 LARLLQFGIVKWNGELFI----RFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIA 1090 (1529)
T ss_pred             HHHHHhhhhhhcchhhHH----HHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHH
Confidence            988865421001123333    3356677899999999888999988888888888888777754

>KOG1822|consensus

Probab=92.52  E-value=24  Score=40.49  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=79.0

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHH-HHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKV-QENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~v-R~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      -|+.+.++++++|.+.|  -.|++..+.+.+...+++..+-+ |..-..++|-+=...|-+++-..+..=+..++..-+|
T Consensus       892 ~rc~~~ea~arLaq~v~--~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~D  969 (2067)
T KOG1822|consen  892 LRCAAAEALARLAQVVG--SAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATD  969 (2067)
T ss_pred             HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhc
Confidence            46788999999999877  57889999999999999966555 6666888998887666666545555545556677788


Q ss_pred             c-hHHHHHHHHHHHHHHHhhhCHH
Q psy10471         83 H-KKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        83 ~-~~~vR~~av~~lg~la~~igp~  105 (318)
                      + .+.|++.+++++..+.+..||.
T Consensus       970 s~~p~VqtwSL~al~~i~~s~~p~  993 (2067)
T KOG1822|consen  970 STSPVVQTWSLHALALILDSSGPM  993 (2067)
T ss_pred             CCCchhhhhHHHHHHHHHcCCCce
Confidence            5 4589999999999999999984

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.52  E-value=4.7  Score=33.98  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=61.1

Q ss_pred             hHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHH
Q psy10471         68 EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALM  147 (318)
Q Consensus        68 ~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~  147 (318)
                      ++......+.+.|++++..-|.+++.-++...+..|+..+...--                            .-+..++
T Consensus        22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~----------------------------~W~~~Ll   73 (165)
T PF08167_consen   22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGS----------------------------QWLRALL   73 (165)
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHH----------------------------HHHHHHH
Confidence            444445556677788888889999999988888666653322211                            1122255


Q ss_pred             HHhcCCc-chHHHHHHHHHHHHHHHHccc-------cccchhhhHHHHHHHHhc
Q psy10471        148 NEYRVPE-LNVQNGVLKALSFLFEYIGEM-------GKDYIYAVTPLLEDALMD  193 (318)
Q Consensus       148 ~~~~d~~-~~v~~~vl~al~~i~~~lg~~-------~~~yl~~iiP~l~~~l~~  193 (318)
                      +.++.++ ..+.+.++.++..+|..+++.       ..|.++.+++.+.+.+.+
T Consensus        74 ~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~  127 (165)
T PF08167_consen   74 SILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD  127 (165)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc
Confidence            5554443 355677888888888776542       456666666666666654

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=92.47  E-value=0.67  Score=44.04  Aligned_cols=77  Identities=18%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             CcCCChHhHHHHHHhhc----------CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH--HHHH
Q psy10471         22 AILPHLKNLVEIIEHGL----------VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK--AIRR   89 (318)
Q Consensus        22 ~~~P~l~~l~~~l~~~l----------~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~--~vR~   89 (318)
                      .+.||+.+|+|.++..+          .+.|+..|.-|+..+++++...+..- ..--.++...+.+.+.|+..  ...-
T Consensus       251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y-~~l~~ri~~tl~k~l~d~~~~~~~~Y  329 (343)
T cd08050         251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY-NTLQPRITRTLLKALLDPKKPLTTHY  329 (343)
T ss_pred             chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCCCCcchhh
Confidence            59999999999987554          34578999999999999998766432 23344566667777777433  3466


Q ss_pred             HHHHHHHHHH
Q psy10471         90 ATVNTFGYIA   99 (318)
Q Consensus        90 ~av~~lg~la   99 (318)
                      =|+.+++.++
T Consensus       330 GAi~GL~~lG  339 (343)
T cd08050         330 GAIVGLSALG  339 (343)
T ss_pred             HHHHHHHHhC
Confidence            6777776654

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG2274|consensus

Probab=92.46  E-value=9.1  Score=40.48  Aligned_cols=208  Identities=13%  Similarity=0.110  Sum_probs=121.1

Q ss_pred             hHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH
Q psy10471         27 LKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP  104 (318)
Q Consensus        27 l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp  104 (318)
                      +..+...+...+.- ..|-----+.++++..+++....  +.-..-++...++.+.- ..+.+|..|+++|...+   ++
T Consensus       447 l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~  521 (1005)
T KOG2274|consen  447 LIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KV  521 (1005)
T ss_pred             HHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---Cc
Confidence            33344334343333 34555447788888777764431  22222233333333333 45557777787776554   33


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhh
Q psy10471        105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAV  183 (318)
Q Consensus       105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~i  183 (318)
                      ..+.+.+=                            .++..+++..-+.+.++-..+.++++++++. +.++..-. ..|
T Consensus       522 ~vl~~~~p----------------------------~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI  572 (1005)
T KOG2274|consen  522 KVLLSLQP----------------------------MILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKI  572 (1005)
T ss_pred             eeccccch----------------------------HHHHHHHHHcccccHHHHHHHHHHHHHHhcc-Chhhhhhhhcch
Confidence            32221111                            2333466666666677888888888888874 54444333 468


Q ss_pred             HHHHHHHHh--cCCHHHHHHHHHHHHHHhhhhcCCCc--hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh--
Q psy10471        184 TPLLEDALM--DRDLVHRQTACATIKHMALGVYGFGC--EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP--  257 (318)
Q Consensus       184 iP~l~~~l~--~~~~~~R~~a~~~i~~la~~~~~~~~--~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~--  257 (318)
                      .|.+.+++.  ..||.+-..+-+.+..+..+...-|.  +..+..+.+.+-.+--.-.+.+...+++-+..+.+.-.+  
T Consensus       573 ~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL  652 (1005)
T KOG2274|consen  573 CPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL  652 (1005)
T ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence            899888884  55678888888888888876643342  334444444432221112366777888888888877765  


Q ss_pred             -hhHHHhHHHHh
Q psy10471        258 -VRILQYVLQGL  268 (318)
Q Consensus       258 -~~~~~~vl~~l  268 (318)
                       +.+..|++|.+
T Consensus       653 ~~~l~~~~FpaV  664 (1005)
T KOG2274|consen  653 PNLLICYAFPAV  664 (1005)
T ss_pred             cHHHHHHHhHHh
Confidence             45778888887

>KOG1525|consensus

Probab=92.16  E-value=3.1  Score=45.92  Aligned_cols=168  Identities=16%  Similarity=0.217  Sum_probs=103.3

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---  105 (318)
                      .+.|.+..-|..++..+|..|.+.+|++-..-+.... +.+.+++..-+..+.|....||.++++..-+.-.. .|.   
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-Cchhhh
Confidence            4455555555667899999999999998875544332 67888888888899999999999999998654432 333   


Q ss_pred             HHHHHHHHhhcccch--hhHHHHHH---HHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH---H---cc
Q psy10471        106 DVLATLLNNLKVQER--QNRVCTTV---AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY---I---GE  174 (318)
Q Consensus       106 ~~l~~Ll~~Lk~~~~--~~R~~~~~---ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~---l---g~  174 (318)
                      .....+.--.++-+.  ++|+-++.   +++.......|- ++-..-..+||--..||..+.+.++++.+.   +   |.
T Consensus       337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~  415 (1266)
T KOG1525|consen  337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGG  415 (1266)
T ss_pred             HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence            111111111122333  33333221   122333444333 555555677888899999999999999883   2   21


Q ss_pred             -ccccchhhhHHHHHHHHhcCCHHHH
Q psy10471        175 -MGKDYIYAVTPLLEDALMDRDLVHR  199 (318)
Q Consensus       175 -~~~~yl~~iiP~l~~~l~~~~~~~R  199 (318)
                       ...+-+..|.--+.+++-..+...|
T Consensus       416 k~~t~~~swIp~kLL~~~y~~~~~~r  441 (1266)
T KOG1525|consen  416 KEITPPFSWIPDKLLHLYYENDLDDR  441 (1266)
T ss_pred             ccccccccccchhHHhhHhhccccHH
Confidence             1222234455566677666666666

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.10  E-value=8.5  Score=34.40  Aligned_cols=199  Identities=14%  Similarity=0.078  Sum_probs=108.0

Q ss_pred             HHHHHh-hcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-HHHH
Q psy10471         31 VEIIEH-GLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-HDVL  108 (318)
Q Consensus        31 ~~~l~~-~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-~~~l  108 (318)
                      +|.++- .-+..+|......+++|+.+|.... .    ...+++..+..+.+.+....+..+++-+..+-+.-+- +..+
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L   76 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-V----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFL   76 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-c----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHH
Confidence            455544 4455789999999999999998652 1    1223444343444555555666677776666653221 1233


Q ss_pred             HHHHHh--hc------ccchhhHHHHH--HHHHHHHhhcC--cccchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccc
Q psy10471        109 ATLLNN--LK------VQERQNRVCTT--VAIAIVAETCS--PFTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEM  175 (318)
Q Consensus       109 ~~Ll~~--Lk------~~~~~~R~~~~--~ai~~i~~~~~--p~~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~  175 (318)
                      ..++..  ++      ..+...+..++  .++..++..-.  -..+++.+...+ ++.+...+...++++..++++--..
T Consensus        77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd  156 (234)
T PF12530_consen   77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD  156 (234)
T ss_pred             HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc
Confidence            333333  11      11222222232  23333332211  137888888888 6777788899999999999753333


Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHhhhhcccCCC
Q psy10471        176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNYVWPNIFETS  237 (318)
Q Consensus       176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~l~~~i~d~~  237 (318)
                      +.....-+.|.+   =.+..+.+-+..+..+.-+..+.... .++....+++..+|......+
T Consensus       157 ~~s~w~vl~~~l---~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  157 FYSAWKVLQKKL---SLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHHHHHHHHhc---CCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            333333344433   11333555454555554433332211 134566778888888876554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=92.01  E-value=2  Score=41.29  Aligned_cols=126  Identities=10%  Similarity=0.217  Sum_probs=77.4

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCCChHhHHHHHHh-hcCC--CCHHHHHHHHHHHHHHHhhCC----------CCCCh-h
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEH-GLVD--EQQKVQENCIDLVGRIADRGP----------EYVSA-R   67 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~-~l~d--~~~~vR~aa~~~LG~la~~~~----------~~i~~-~   67 (318)
                      .+-|.+|...+-.|+.--+..+.+-+...+..++. .-.|  .+++.+.+|+..+|-+|..+.          +.++. .
T Consensus       225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~  304 (370)
T PF08506_consen  225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD  304 (370)
T ss_dssp             -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred             CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence            35688899999999886555444444333333321 1123  468999999999999997552          12222 2


Q ss_pred             hHHHHHHHHHHHhh-h--chHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHH
Q psy10471         68 EWMRICFELLELLK-A--HKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAI  130 (318)
Q Consensus        68 ~~~~il~~Ll~~L~-d--~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai  130 (318)
                      .+...+.   ..|+ +  ..+.+|..|++.+....+.+.+.   .+++.+++.|+.++..+|.-+|.+|
T Consensus       305 Ff~~~v~---peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  305 FFSQHVL---PELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHTC---HHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHhH---HHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            2222222   2223 2  56779999999999999888876   4577788888877776666666554

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG0392|consensus

Probab=91.94  E-value=7.2  Score=42.72  Aligned_cols=228  Identities=14%  Similarity=0.104  Sum_probs=130.0

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-----HHhhh----c-hHHHHHHHHHHHH
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-----ELLKA----H-KKAIRRATVNTFG   96 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-----~~L~d----~-~~~vR~~av~~lg   96 (318)
                      ....+..+..-+-++++.+|..+..++-++.+..+...+...+..++..++     +.+.|    + ...||.++.++||
T Consensus        75 f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~  154 (1549)
T KOG0392|consen   75 FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG  154 (1549)
T ss_pred             HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence            345555566666677899999999999999987776555444444444333     33333    1 2258999999999


Q ss_pred             HHHhhhCHH---HHHHHHHHhhcccchhh--------HHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHH
Q psy10471         97 YIAKAIGPH---DVLATLLNNLKVQERQN--------RVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKAL  165 (318)
Q Consensus        97 ~la~~igp~---~~l~~Ll~~Lk~~~~~~--------R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al  165 (318)
                      .+-+.+.+.   +.++.++..++.+....        |+.++.--..+...++  .+++....-+.|.+..++..+.+.+
T Consensus       155 ~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~--~vl~~~i~~L~ds~ddv~~~aa~~l  232 (1549)
T KOG0392|consen  155 AYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLN--LVLDFVIEGLEDSDDDVRSVAAQFL  232 (1549)
T ss_pred             HHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhhcchHHHHHHHHHh
Confidence            999988875   45666666666543322        3333311111221111  5666777777888888887777777


Q ss_pred             HHHHHHHccccccchhhhHHHHHHHHhcCC------HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChH
Q psy10471        166 SFLFEYIGEMGKDYIYAVTPLLEDALMDRD------LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPH  239 (318)
Q Consensus       166 ~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~------~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~  239 (318)
                      ..+....-.....-+++++-.+-..+..-+      .+.|-..+..+-.. +........+.-..+-+.+||.+..+-..
T Consensus       233 ~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~-evl~l~~~~n~~~~Lvp~~~p~l~~~i~s  311 (1549)
T KOG0392|consen  233 VPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIEN-EVLDLFEQQNLEVGLVPRLWPFLRHTISS  311 (1549)
T ss_pred             hhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhH-HHHHHHHHhhhhhccchhhHHHHHHHHHH
Confidence            666554321122223333333333332221      22222222222111 11100000111234677778888888888


Q ss_pred             HHHHHHHHHHHHHHHcCh
Q psy10471        240 LVQAFMDAVEGLRVALGP  257 (318)
Q Consensus       240 vr~~ii~~i~~i~~alG~  257 (318)
                      +|..+++.+..+..+-+.
T Consensus       312 v~~a~l~~l~~lle~~~q  329 (1549)
T KOG0392|consen  312 VRRAALETLAMLLEADDQ  329 (1549)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence            999999999988877654

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=91.63  E-value=0.33  Score=38.78  Aligned_cols=71  Identities=11%  Similarity=0.106  Sum_probs=48.3

Q ss_pred             hHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471         29 NLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA   99 (318)
Q Consensus        29 ~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la   99 (318)
                      +++..+..+|.. .+|.+-..||.-||+++...+.-...-+=...=..+++++..+++.||..|+.++..+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            577778888844 46888999999999999875532111111112223567778899999999999987764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2274|consensus

Probab=91.43  E-value=22  Score=37.79  Aligned_cols=258  Identities=13%  Similarity=0.146  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHHHhhhchH
Q psy10471          9 IKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS--AREWMRICFELLELLKAHKK   85 (318)
Q Consensus         9 l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~--~~~~~~il~~Ll~~L~d~~~   85 (318)
                      ++++...+..+|. -..|..+.++..+.++..+.+..|-..-..+|...++.-+++-.  -..+-|....+.-...+ .+
T Consensus       509 i~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~-DP  587 (1005)
T KOG2274|consen  509 ISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE-DP  587 (1005)
T ss_pred             HHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC-Cc
Confidence            4445555554444 47777888888888888888888888889999998886665432  13344444433322222 22


Q ss_pred             HH---HHHHHHHHHHHHhhhCHH--HHHHHHHHhhcccc-hhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHH
Q psy10471         86 AI---RRATVNTFGYIAKAIGPH--DVLATLLNNLKVQE-RQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQN  159 (318)
Q Consensus        86 ~v---R~~av~~lg~la~~igp~--~~l~~Ll~~Lk~~~-~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~  159 (318)
                      .|   -...++.+.+.++.-||+  ..++++++.+.... ...                                .....
T Consensus       588 ~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~--------------------------------~~l~~  635 (1005)
T KOG2274|consen  588 QVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAP--------------------------------AGLCA  635 (1005)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccC--------------------------------chhhH
Confidence            22   233555556666667775  34555555554221 000                                22233


Q ss_pred             HHHHHHHHHHHHHcccccc-chhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHhhh--------hcCCCc--hhHHHHHHH
Q psy10471        160 GVLKALSFLFEYIGEMGKD-YIYAVTPLLEDALMDR-DLVHRQTACATIKHMALG--------VYGFGC--EDALTHLLN  227 (318)
Q Consensus       160 ~vl~al~~i~~~lg~~~~~-yl~~iiP~l~~~l~~~-~~~~R~~a~~~i~~la~~--------~~~~~~--~~~i~hll~  227 (318)
                      .++..++.+.+.-..-..+ .+....|.+.++.-+. |...-|++...+..+...        -...|+  ...| ..+.
T Consensus       636 ~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yIm-qV~s  714 (1005)
T KOG2274|consen  636 IAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIM-QVLS  714 (1005)
T ss_pred             HHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHH-HHHH
Confidence            3444444444443222111 1123334444444433 344445555555554443        111122  1222 3333


Q ss_pred             hhhhcccCCC--hHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhcccc-ccchHHHHHHHHHhhccccccccccCCC
Q psy10471        228 YVWPNIFETS--PHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPA-RKVRDVYWKIYNSLYIGGQDALISAYPR  300 (318)
Q Consensus       228 ~l~~~i~d~~--~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~~~a-~~~r~~~w~i~~~~~~~~~~~~~p~~p~  300 (318)
                      .+++--.+++  ..+-.-++..+..+.+-+|+  |..+-.++--|.... -++....-.++..+...+.+.++-||-.
T Consensus       715 qLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S  792 (1005)
T KOG2274|consen  715 QLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS  792 (1005)
T ss_pred             HHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            4333322222  23444566777777777777  335555554443322 1344444455566666666677777433

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=91.00  E-value=2.3  Score=33.23  Aligned_cols=87  Identities=13%  Similarity=0.101  Sum_probs=57.9

Q ss_pred             chhhhHHHHHHHHhc----CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        179 YIYAVTPLLEDALMD----RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       179 yl~~iiP~l~~~l~~----~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      ++=.++-.|.+.+.+    .+...|+.+...++.+...++ ..-.....++.-.+...+  +.++++...++++..+...
T Consensus         8 ~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~-~~i~~~~pQI~a~L~sal--~~~~l~~~al~~W~~fi~~   84 (107)
T PF08064_consen    8 HILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG-SHISSARPQIMACLQSAL--EIPELREEALSCWNCFIKT   84 (107)
T ss_pred             HHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHH
Confidence            333456666666666    457888999999999988443 111223333333332222  4569999999999999999


Q ss_pred             cChhhHHHhHHHHh
Q psy10471        255 LGPVRILQYVLQGL  268 (318)
Q Consensus       255 lG~~~~~~~vl~~l  268 (318)
                      ++++.+.|.+=+.+
T Consensus        85 L~~~~l~~ll~~~~   98 (107)
T PF08064_consen   85 LDEEDLGPLLDQIF   98 (107)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99988777665443

; GO: 0004674 protein serine/threonine kinase activity

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=90.71  E-value=0.38  Score=29.83  Aligned_cols=29  Identities=10%  Similarity=0.087  Sum_probs=24.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHh
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIAD   58 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~   58 (318)
                      .++.++++++..++.+++.|+++|++++.
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            45667777778889999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1949|consensus

Probab=90.64  E-value=20  Score=37.18  Aligned_cols=146  Identities=19%  Similarity=0.196  Sum_probs=90.2

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC
Q psy10471         76 LLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV  152 (318)
Q Consensus        76 Ll~~L~d~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d  152 (318)
                      |++-|+..+..||..|...|-..=...||.   +-+++++.+      |+|                     .++..++|
T Consensus       179 l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k------Qf~---------------------~l~~LL~d  231 (1005)
T KOG1949|consen  179 LWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK------QFE---------------------ELYSLLED  231 (1005)
T ss_pred             HHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH------HHH---------------------HHHHHhcC
Confidence            447778888889988888887766666664   234444433      111                     17788899


Q ss_pred             CcchHH----HHHHHHHHHHHHHHccccccchhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHH
Q psy10471        153 PELNVQ----NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL-MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLN  227 (318)
Q Consensus       153 ~~~~v~----~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l-~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~  227 (318)
                      +-+.+|    .+++++++.+++-+..   .-+-.++-.+.+-+ .+....+|-.....+..++-+-   -.-..+..++|
T Consensus       232 ~~p~VRS~a~~gv~k~~s~fWe~iP~---~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np---~sh~~le~~Lp  305 (1005)
T KOG1949|consen  232 PYPMVRSTAILGVCKITSKFWEMIPP---TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP---LSHPLLEQLLP  305 (1005)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHcCH---HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc---cchhHHHHHHH
Confidence            999998    4456666666665442   11222323332222 2444577765555544443322   23346677888


Q ss_pred             hhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        228 YVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       228 ~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      .+-+.+.|.+..||.+..+-+-.|..+
T Consensus       306 al~~~l~D~se~VRvA~vd~ll~ik~v  332 (1005)
T KOG1949|consen  306 ALRYSLHDNSEKVRVAFVDMLLKIKAV  332 (1005)
T ss_pred             hcchhhhccchhHHHHHHHHHHHHHhh
Confidence            887888889999999998888777544

>KOG2933|consensus

Probab=90.59  E-value=4.4  Score=37.71  Aligned_cols=101  Identities=14%  Similarity=0.173  Sum_probs=74.8

Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      ..-+-++.++..+.+-+++.-..+-++++.+++.+.+..+.. ..+.+.-++-.++-.-.+++.-+|..+-.++.++...
T Consensus       122 ~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~-i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~  200 (334)
T KOG2933|consen  122 SLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS-IDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH  200 (334)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc
Confidence            344566788888888888888888889999999998887511 1222233333333333456788999999999999999


Q ss_pred             cChhhHHHhHHHHhccccccch
Q psy10471        255 LGPVRILQYVLQGLFHPARKVR  276 (318)
Q Consensus       255 lG~~~~~~~vl~~l~~~a~~~r  276 (318)
                      ..+....+.++|.+.|-..++|
T Consensus       201 vtp~~~L~~L~~~~~~~n~r~r  222 (334)
T KOG2933|consen  201 VTPQKLLRKLIPILQHSNPRVR  222 (334)
T ss_pred             cChHHHHHHHHHHHhhhchhhh
Confidence            9999999999999988554433

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.57  E-value=0.4  Score=30.87  Aligned_cols=41  Identities=15%  Similarity=0.353  Sum_probs=29.5

Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHH
Q psy10471         51 DLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNT   94 (318)
Q Consensus        51 ~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~   94 (318)
                      ++|+++.+.-+.....+++...   +.+.+.|++++||.+|+..
T Consensus         1 k~l~~iv~~dp~ll~~~~v~~~---i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen    1 KALSSIVEKDPTLLDSSDVQSA---IIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             ChHHHHHhcCccccchHHHHHH---HHHHhcCCChHHHHHHHHH
Confidence            3678888776665544444444   5588899999999999875

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=90.47  E-value=1.9  Score=32.72  Aligned_cols=73  Identities=26%  Similarity=0.300  Sum_probs=49.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchH--HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Q psy10471         39 VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKK--AIRRATVNTFGYIAKAIGPHDVLATLLNNLK  116 (318)
Q Consensus        39 ~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~--~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk  116 (318)
                      .|+|+..|+-|++.|+.++...+..- +.--.++...+++.+.|+++  ..+-=|+.++..+    ||+.+-..++.+++
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~   90 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK   90 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence            35689999999999999998766432 33344677778888888433  3566677777654    55544434555443

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=90.13  E-value=6.8  Score=37.66  Aligned_cols=164  Identities=18%  Similarity=0.241  Sum_probs=93.4

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      -+|.+|+|.+-.+..+.+. ....-..++..++....+++.+.|.+|+.||.+++-..++.+..-.   =+..|++.+-|
T Consensus        83 ~ER~QALkliR~~l~~~~~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~g---G~~~L~~~l~d  158 (371)
T PF14664_consen   83 VEREQALKLIRAFLEIKKG-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECG---GIRVLLRALID  158 (371)
T ss_pred             HHHHHHHHHHHHHHHhcCC-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcC---CHHHHHHHHHh
Confidence            3788999999999987432 2223567888888888888899999999999998865443110000   01112233333


Q ss_pred             chHHHHHHHHHHHHHHHhhh------CHHHHHHHHHHhhccc-------ch--hhHHHHHHHHHHHHhh-------cC-c
Q psy10471         83 HKKAIRRATVNTFGYIAKAI------GPHDVLATLLNNLKVQ-------ER--QNRVCTTVAIAIVAET-------CS-P  139 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~i------gp~~~l~~Ll~~Lk~~-------~~--~~R~~~~~ai~~i~~~-------~~-p  139 (318)
                      ...++-...+.++-++.+.-      .+..-+..++..+-+.       ++  ..-.....+|..+-.+       |. .
T Consensus       159 ~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~  238 (371)
T PF14664_consen  159 GSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMND  238 (371)
T ss_pred             ccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCC
Confidence            32234444444444433211      1111122222222211       11  1112234455444332       22 2


Q ss_pred             ccchHHHHHHhcCCcchHHHHHHHHHHHHHH
Q psy10471        140 FTVLPALMNEYRVPELNVQNGVLKALSFLFE  170 (318)
Q Consensus       140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~  170 (318)
                      +..+..++..++.|.++++..++..+-.+|.
T Consensus       239 ~~~lksLv~~L~~p~~~ir~~Ildll~dllr  269 (371)
T PF14664_consen  239 FRGLKSLVDSLRLPNPEIRKAILDLLFDLLR  269 (371)
T ss_pred             chHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999877666554

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=90.07  E-value=1.8  Score=33.90  Aligned_cols=80  Identities=14%  Similarity=0.289  Sum_probs=57.9

Q ss_pred             cCCChHhHHHHHHhhcCC---C-CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh--chHHHHHHHHHHHH
Q psy10471         23 ILPHLKNLVEIIEHGLVD---E-QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKAIRRATVNTFG   96 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d---~-~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d--~~~~vR~~av~~lg   96 (318)
                      +.||+=.++..+-..+.|   . +..-|+.+++++|.+.+.++.+++ ...+.|    +..|+.  ..+..|..|+++-.
T Consensus         5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-~~~pQI----~a~L~sal~~~~l~~~al~~W~   79 (107)
T PF08064_consen    5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-SARPQI----MACLQSALEIPELREEALSCWN   79 (107)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-HHHHHH----HHHHHHHhCChhhHHHHHHHHH
Confidence            566777788888888888   3 344599999999999997777663 222223    333343  34589999999999


Q ss_pred             HHHhhhCHHHH
Q psy10471         97 YIAKAIGPHDV  107 (318)
Q Consensus        97 ~la~~igp~~~  107 (318)
                      .+.+.+++.++
T Consensus        80 ~fi~~L~~~~l   90 (107)
T PF08064_consen   80 CFIKTLDEEDL   90 (107)
T ss_pred             HHHHHCCHHHH
Confidence            99988888654

; GO: 0004674 protein serine/threonine kinase activity

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.06  E-value=0.56  Score=29.61  Aligned_cols=29  Identities=21%  Similarity=0.271  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471         72 ICFELLELLKAHKKAIRRATVNTFGYIAK  100 (318)
Q Consensus        72 il~~Ll~~L~d~~~~vR~~av~~lg~la~  100 (318)
                      .+..|+++|++.++.+|+.|+++++.|++
T Consensus        13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen   13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            45557788899999999999999999873

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=89.65  E-value=46  Score=38.61  Aligned_cols=247  Identities=13%  Similarity=0.088  Sum_probs=132.9

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHHHh
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---AREWMRICFELLELL   80 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~~~~~~il~~Ll~~L   80 (318)
                      -|...++|+.++-..-|..++.=-+.+..++.-..+|+++..-+.|-.++..+.+..-.++.   ..-+...+.-|.++-
T Consensus      1199 VrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa 1278 (1780)
T PLN03076       1199 IRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFT 1278 (1780)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHH
Confidence            36688999999988877778888888999998888899999888999999988875333331   123333333333333


Q ss_pred             hhch-HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhh-cccchh-----hH--HHHHHHHHHHHhh----cCcccchHHHH
Q psy10471         81 KAHK-KAIRRATVNTFGYIAKAIGPHDVLATLLNNL-KVQERQ-----NR--VCTTVAIAIVAET----CSPFTVLPALM  147 (318)
Q Consensus        81 ~d~~-~~vR~~av~~lg~la~~igp~~~l~~Ll~~L-k~~~~~-----~R--~~~~~ai~~i~~~----~~p~~vip~L~  147 (318)
                      +... ..+=-.|+..|-.++..+-     ..-+..+ +.++..     .+  .........+...    ..=+.++-.|-
T Consensus      1279 ~q~~~~nISL~AI~lL~~~~~~La-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls 1353 (1780)
T PLN03076       1279 NSRFNKDISLNAIAFLRFCATKLA-----EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLS 1353 (1780)
T ss_pred             hCcCcccccHHHHHHHHHHHHHHH-----hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            3211 1122223333333322220     0000000 000000     00  0000000000000    00023444566


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHcccccc-ch----hhhHHHHHHHHhcC-----------------------CHHHH
Q psy10471        148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKD-YI----YAVTPLLEDALMDR-----------------------DLVHR  199 (318)
Q Consensus       148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~-yl----~~iiP~l~~~l~~~-----------------------~~~~R  199 (318)
                      ....|+.++||+.+++.+=.+++..|..|.+ +.    ..++..+.+.++..                       +..+.
T Consensus      1354 ~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~ 1433 (1780)
T PLN03076       1354 ELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLY 1433 (1780)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHH
Confidence            6667889999999999999999888988775 32    33333333344311                       11344


Q ss_pred             HHHHHHHHHHhhhhcCCCchhH----HHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh
Q psy10471        200 QTACATIKHMALGVYGFGCEDA----LTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP  257 (318)
Q Consensus       200 ~~a~~~i~~la~~~~~~~~~~~----i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~  257 (318)
                      .+...++..++.-..  .+-+.    +..++..+..++..++..+-..-.+++..+...-|.
T Consensus      1434 eT~~~AL~~lvdLft--~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1434 ETCTLALQLVVDLFV--KFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            555555555544432  22233    333444445566667777777777787777777765

>KOG4535|consensus

Probab=89.45  E-value=3.3  Score=40.85  Aligned_cols=182  Identities=13%  Similarity=0.073  Sum_probs=109.1

Q ss_pred             HhHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC---
Q psy10471         28 KNLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG---  103 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig---  103 (318)
                      +...+.++-.+.|.. --||.+|++++|-+.=.-+-..+......-....+..+-|....+|.-+.+++|.|.+++-   
T Consensus       389 ~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~  468 (728)
T KOG4535|consen  389 QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNM  468 (728)
T ss_pred             hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCC
Confidence            367788888898854 5579999999887653222111111122222334556667677789999999999887642   


Q ss_pred             HH----------HHHHHHHH--hhcccch-hhHHHHHHHHHHHH------hhcCcccchHHHHHHhcCCc-----chHHH
Q psy10471        104 PH----------DVLATLLN--NLKVQER-QNRVCTTVAIAIVA------ETCSPFTVLPALMNEYRVPE-----LNVQN  159 (318)
Q Consensus       104 p~----------~~l~~Ll~--~Lk~~~~-~~R~~~~~ai~~i~------~~~~p~~vip~L~~~~~d~~-----~~v~~  159 (318)
                      |.          .++..+..  ++-+.++ ++|--..++++...      +.|+-...+..-+..+-+.+     .-|+.
T Consensus       469 Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W  548 (728)
T KOG4535|consen  469 PTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRW  548 (728)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccch
Confidence            21          22222222  1112222 56666667776432      22222244444444444433     34788


Q ss_pred             HHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q psy10471        160 GVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALMDR-DLVHRQTACATIKHM  209 (318)
Q Consensus       160 ~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~~~-~~~~R~~a~~~i~~l  209 (318)
                      .+|.++++.|+.-..  .--+.-+++.|.+..++++. +..+|.+|+.++.--
T Consensus       549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp  601 (728)
T KOG4535|consen  549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP  601 (728)
T ss_pred             HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence            999999999985322  23355678889998888754 578999999887433

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=89.44  E-value=14  Score=32.29  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=51.8

Q ss_pred             hhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471         36 HGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL  111 (318)
Q Consensus        36 ~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~L  111 (318)
                      ..|+-+....-.-++..++.+-+..|+.- .+.+.+++..+-++-.++...-|.++=+++|...+.|||..++..+
T Consensus         7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~-~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~l   81 (198)
T PF08161_consen    7 SLLSYRYQHAWPEVLNVLSALFEKLGERS-SPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSIL   81 (198)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHHhhhc-cHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHC
Confidence            34433334455566677777777666543 4667777776655555566789999999999999999999776554

>KOG0413|consensus

Probab=89.40  E-value=35  Score=36.84  Aligned_cols=73  Identities=19%  Similarity=0.271  Sum_probs=49.3

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHH-HHHHHHhhhchHHHHHHHHHHHHHHHhhhCH
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC-FELLELLKAHKKAIRRATVNTFGYIAKAIGP  104 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il-~~Ll~~L~d~~~~vR~~av~~lg~la~~igp  104 (318)
                      ++--.|.|..-|+|+.+-||+.++..|.++-+..-  +   .|-..+ +..+-.|-|.+..+|+-|=-.||.+-..=.|
T Consensus      1004 ~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~--v---Kw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1004 TDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGI--V---KWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred             HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhh--h---hcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence            45566778888999999999999999999887432  1   232222 2233333456667888877777777665555

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=89.38  E-value=8.5  Score=35.43  Aligned_cols=129  Identities=16%  Similarity=0.130  Sum_probs=79.2

Q ss_pred             cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc----ccc--hhhhHHHHHHHHh--------cCCHHHHHHHHHHH
Q psy10471        141 TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG----KDY--IYAVTPLLEDALM--------DRDLVHRQTACATI  206 (318)
Q Consensus       141 ~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~----~~y--l~~iiP~l~~~l~--------~~~~~~R~~a~~~i  206 (318)
                      -++|++++.+.|.+.+++..-++++..+.+.....-    ..+  ..-+-+.+...+.        +.+..+-+.+..++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            689999999999999999888888888887554321    111  2333344444443        33455556666666


Q ss_pred             HHHhhhhcCCCc---hhHHHH-HHHhhhhcccC----CChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471        207 KHMALGVYGFGC---EDALTH-LLNYVWPNIFE----TSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF  269 (318)
Q Consensus       207 ~~la~~~~~~~~---~~~i~h-ll~~l~~~i~d----~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~  269 (318)
                      -.++......+.   ...+.+ +..-++.++..    +++.++...++.+..+...+|...  ..+.++|.+.
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~  271 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS  271 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            666554321221   122222 22223333332    358999999999999999999864  5555555553

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=89.21  E-value=11  Score=39.38  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             cchHHHHHHhcCC--cchHHHHHHHHHHHHHHHHccccccch---hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        141 TVLPALMNEYRVP--ELNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       141 ~vip~L~~~~~d~--~~~v~~~vl~al~~i~~~lg~~~~~yl---~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      .+++.|...++..  +.+.--.++-++..+...  .....++   .+++..+.+++.|.++.+|+.+-.++.-+++.=
T Consensus       576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            4566666666442  233333333333333322  2223344   458888999999999999999988887765543

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=89.02  E-value=14  Score=35.62  Aligned_cols=196  Identities=16%  Similarity=0.186  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CC---HHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHH-
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQ---QKVQENCIDLVGRIADRGP---EYVSAREWMRICFELL-   77 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~---~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll-   77 (318)
                      .+..++..++.--++.+.||+++.+..+..+|..  ..   ..+-..|+.-|+.+++...   .+-..+.+..|+..++ 
T Consensus       115 ~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie~VI~  194 (370)
T PF08506_consen  115 WICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIEKVIF  194 (370)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHHHhcc
Confidence            4556666666666667889999888887776654  22   3334556666666654322   1211222333444321 


Q ss_pred             ----------HHhhh-------------chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhc-ccch--hhHHH
Q psy10471         78 ----------ELLKA-------------HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLK-VQER--QNRVC  125 (318)
Q Consensus        78 ----------~~L~d-------------~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk-~~~~--~~R~~  125 (318)
                                ++..|             +..+-|++|..-+-.+++.-+..      ..+..+++... +++.  +.+-+
T Consensus       195 Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~  274 (370)
T PF08506_consen  195 PNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDG  274 (370)
T ss_dssp             HHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHH
T ss_pred             CccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHH
Confidence                      11122             22335677888887777654432      12333333222 1122  22222


Q ss_pred             HHHHHHHHHhhc-----C-----c---------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471        126 TTVAIAIVAETC-----S-----P---------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL  186 (318)
Q Consensus       126 ~~~ai~~i~~~~-----~-----p---------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~  186 (318)
                      +..-++.++...     |     +         ..|+|-|. .-....+-++..+++.+..+-..+.   ++.+..++|.
T Consensus       275 Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~~~l~~~~~~  350 (370)
T PF08506_consen  275 ALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---KEQLLQIFPL  350 (370)
T ss_dssp             HHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----HHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---HHHHHHHHHH
Confidence            333334444221     1     0         14555554 1112223355666666654443333   5677889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q psy10471        187 LEDALMDRDLVHRQTACATI  206 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i  206 (318)
                      +.+.+.+.+..++.-||.+|
T Consensus       351 l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  351 LVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHhCCCCcchhhhhhhhC
Confidence            99999999999998888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG4535|consensus

Probab=88.50  E-value=0.84  Score=44.82  Aligned_cols=100  Identities=13%  Similarity=0.178  Sum_probs=70.2

Q ss_pred             hhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHH-HHHHH
Q psy10471          6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD-----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICF-ELLEL   79 (318)
Q Consensus         6 ~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d-----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~-~Ll~~   79 (318)
                      -.+.+++|.+.++......|-..+++.-=+..+-+     ..-+||.++|.++|++-++-.-..+-..|.+++| .|+.+
T Consensus       502 ~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~L  581 (728)
T KOG4535|consen  502 SNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSL  581 (728)
T ss_pred             hHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHH
Confidence            35677777777766555566666666654444444     2467999999999999986554333567888777 56677


Q ss_pred             hhh-chHHHHHHHHHHHHHHHhhhCHH
Q psy10471         80 LKA-HKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        80 L~d-~~~~vR~~av~~lg~la~~igp~  105 (318)
                      +.+ .+++||-.|-.++.+-++-.|-.
T Consensus       582 v~~~~NFKVRi~AA~aL~vp~~re~~~  608 (728)
T KOG4535|consen  582 VTSCKNFKVRIRAAAALSVPGKREQYG  608 (728)
T ss_pred             HHHhccceEeehhhhhhcCCCCcccch
Confidence            777 78899988777777777665544

>KOG2021|consensus

Probab=88.22  E-value=14  Score=38.61  Aligned_cols=60  Identities=17%  Similarity=0.413  Sum_probs=46.1

Q ss_pred             CHHHHHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHH-HHHHhhhCHHH
Q psy10471         42 QQKVQENCIDLVGRIADRGPE-YVSAREWMRICFELLELLKAHKKAIRRATVNTF-GYIAKAIGPHD  106 (318)
Q Consensus        42 ~~~vR~aa~~~LG~la~~~~~-~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~l-g~la~~igp~~  106 (318)
                      +|++-..++.++|+..+|..- .+.-..+++++...+   +-  ..+|.+|..++ ..+.+.|.|.+
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl---~i--eelR~aac~cilaiVsKkMkP~d  267 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFL---NI--EELRIAACNCILAIVSKKMKPMD  267 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHH---hH--HHHHHHHHHHHHHHHhcCCChhH
Confidence            799999999999999998762 221367788877544   43  67999999995 77888899973

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=87.93  E-value=2.8  Score=32.86  Aligned_cols=82  Identities=12%  Similarity=0.185  Sum_probs=58.6

Q ss_pred             cCCChHhHHHHHHhhcCCCC---HH-HHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQ---QK-VQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYI   98 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~---~~-vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~l   98 (318)
                      +.+|+=.++..+...+.|.+   |- -|+.++.++|.+.+.+|.++. ...+.|+--|...|  ..+..|..|+++-..+
T Consensus         5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~-~a~pQI~acL~saL--~~~eL~~~al~~W~~~   81 (107)
T smart00802        5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS-SALPQIMACLQSAL--EIPELRSLALRCWHVL   81 (107)
T ss_pred             HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence            45677778888888888865   33 389999999999998777652 33333333233223  4577999999999988


Q ss_pred             HhhhCHHHH
Q psy10471         99 AKAIGPHDV  107 (318)
Q Consensus        99 a~~igp~~~  107 (318)
                      ...+++.++
T Consensus        82 i~~L~~~~l   90 (107)
T smart00802       82 IKTLKEEEL   90 (107)
T ss_pred             HHhCCHHHH
Confidence            888887643

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG3961|consensus

Probab=87.65  E-value=2  Score=37.87  Aligned_cols=76  Identities=16%  Similarity=0.096  Sum_probs=54.0

Q ss_pred             chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC
Q psy10471        142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG  217 (318)
Q Consensus       142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~  217 (318)
                      .+|.+..-+.+-+---+-.+-+.+..+....|.+..+-+|++++.+.+++.++|..+.....+++..++......|
T Consensus       115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG  190 (262)
T KOG3961|consen  115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVG  190 (262)
T ss_pred             HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccc
Confidence            3444444333322222334445556666677888999999999999999999999999999999998877764344

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=87.48  E-value=1.1  Score=32.58  Aligned_cols=60  Identities=12%  Similarity=0.178  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         45 VQENCIDLVGRIADRGP--EYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        45 vR~aa~~~LG~la~~~~--~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      ..++|++++|.+++...  ++++   -..++..++++... +..++|-.|..++|-++....-.++
T Consensus         3 ~lKaaLWaighIgss~~G~~lL~---~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~   65 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLLD---ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEI   65 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHHh---hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHH
Confidence            36899999999997422  3332   22345555566665 7788999999999999975443333

>KOG1822|consensus

Probab=87.22  E-value=63  Score=37.29  Aligned_cols=142  Identities=15%  Similarity=0.172  Sum_probs=99.8

Q ss_pred             HHHHHHHhhCCC-CCChhhHHHHHHHHH-HHhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccch-hhH
Q psy10471         51 DLVGRIADRGPE-YVSAREWMRICFELL-ELLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQER-QNR  123 (318)
Q Consensus        51 ~~LG~la~~~~~-~i~~~~~~~il~~Ll-~~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~-~~R  123 (318)
                      .+++.+++.-+. .+.+.++-..-..++ +.+..+++..|-++.+++++++...+..    .+...+++.|++..- -.|
T Consensus       854 s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R  933 (2067)
T KOG1822|consen  854 SALKYLAEFKGATSLGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITR  933 (2067)
T ss_pred             HHHHHHHhcccccccCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHH
Confidence            356677775553 444555555554433 3344478888988999999999877632    456677777775433 466


Q ss_pred             HHHHHHHHHHHhhcC---cc----cchHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh
Q psy10471        124 VCTTVAIAIVAETCS---PF----TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM  192 (318)
Q Consensus       124 ~~~~~ai~~i~~~~~---p~----~vip~L~~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~  192 (318)
                      ....-|+|.+-...|   +.    +-+..+....+|++. .||+..++++..+..+.|..+.-|+...+.....++.
T Consensus       934 ~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen  934 TGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred             HHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence            677888888776554   32    344456667788865 9999999999999999898888888877777777774

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=86.99  E-value=43  Score=35.09  Aligned_cols=251  Identities=10%  Similarity=0.108  Sum_probs=137.6

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHh----HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE   78 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~----l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~   78 (318)
                      +++..+++++..+.... ..+.|--+.    +++.++|.++++.--.|.-||..++.+.+.-++   ..-...+.....+
T Consensus       431 rq~egalr~lasi~s~i-tk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~n  506 (970)
T COG5656         431 RQAEGALRLLASIKSFI-TKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHN  506 (970)
T ss_pred             HHHhhHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHH
Confidence            45667788777776622 334444332    556677888998777799999999999665444   3345556666678


Q ss_pred             HhhhchHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhh----cccchhhHHHHHHHH-HHHHhhcCcc--cchHHHH
Q psy10471         79 LLKAHKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNL----KVQERQNRVCTTVAI-AIVAETCSPF--TVLPALM  147 (318)
Q Consensus        79 ~L~d~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~L----k~~~~~~R~~~~~ai-~~i~~~~~p~--~vip~L~  147 (318)
                      .++++.-.||.+|--++..+...-.-+    ..++..|..|    ++=+-..=.++.+++ +..++...||  .++..|.
T Consensus       507 cl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv  586 (970)
T COG5656         507 CLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLV  586 (970)
T ss_pred             HHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHH
Confidence            888877778866555544332221111    1222222222    211112333445555 3455666675  3333333


Q ss_pred             H----Hhc---CCc---------chHH-HHHHHHHHHHHHHHccc--cccchh-hhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471        148 N----EYR---VPE---------LNVQ-NGVLKALSFLFEYIGEM--GKDYIY-AVTPLLEDALMDRDLVHRQTACATIK  207 (318)
Q Consensus       148 ~----~~~---d~~---------~~v~-~~vl~al~~i~~~lg~~--~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~  207 (318)
                      +    ...   +.+         .++. .++++.+.++.-++...  .-.|+. .+.|.+.=++++.-..+-+-+.+.+.
T Consensus       587 ~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dild  666 (970)
T COG5656         587 RQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILD  666 (970)
T ss_pred             HHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            2    221   111         1222 67888899888887653  335664 46677777777666666666666664


Q ss_pred             HHhhhhcCCCchhHHHHHHHhhhhcccCCCh-HHHHHHHHHHHHHHHHcChhh
Q psy10471        208 HMALGVYGFGCEDALTHLLNYVWPNIFETSP-HLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       208 ~la~~~~~~~~~~~i~hll~~l~~~i~d~~~-~vr~~ii~~i~~i~~alG~~~  259 (318)
                      ...-..+  .-+..+-.+...+.....++.. ..-..+..+++.+..--|.++
T Consensus       667 g~tf~sk--eI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef  717 (970)
T COG5656         667 GYTFMSK--EIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEF  717 (970)
T ss_pred             hhhHHHH--HhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccc
Confidence            3322221  1112333444444444433332 455567777777766665543

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=86.88  E-value=2.7  Score=32.92  Aligned_cols=66  Identities=12%  Similarity=0.119  Sum_probs=52.0

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE   75 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~   75 (318)
                      +|..++++|+++-.++|..+...+++++-++...|..  |..|..|+.+-.-+...-.    .+++.+++..
T Consensus        31 ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~----~~~l~~ll~~   96 (107)
T smart00802       31 EKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLK----EEELGPLLDQ   96 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCC----HHHHHHHHHH
Confidence            5888999999999999988888888999888888864  5699999998888777443    2455555543

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.79  E-value=11  Score=38.92  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=77.5

Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhh-------cC--c---ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc
Q psy10471        109 ATLLNNLKVQERQNRVCTTVAIAIVAET-------CS--P---FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG  176 (318)
Q Consensus       109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~-------~~--p---~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~  176 (318)
                      ..+...|..++...|+++..+.+.+-+.       ..  |   ..++.-+...+.|..+.+|+-+++.+..+|+. ..++
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl-~sk~  380 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDL-NSKT  380 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhC-cccc
Confidence            3444555666779999999999854322       11  1   14555566678899999999999999999973 4444


Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                      ..-=++++....+.+.|++..+|+.+..+++.+-..
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~  416 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMR  416 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhc
Confidence            445578999999999999999999999999887543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=86.17  E-value=33  Score=32.99  Aligned_cols=64  Identities=20%  Similarity=0.358  Sum_probs=45.5

Q ss_pred             hcCCC-CHHHHHHHHHHHHHHHhh--CCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         37 GLVDE-QQKVQENCIDLVGRIADR--GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        37 ~l~d~-~~~vR~aa~~~LG~la~~--~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      +-+|. +..-|+.|++.+-.+.+.  +...+ +.-+.+-   +..+..++.++.|+.|+.|+..++ ...|.
T Consensus        75 L~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~~~vvra---lvaiae~~~D~lr~~cletL~El~-l~~P~  141 (371)
T PF14664_consen   75 LDRDNKNDVEREQALKLIRAFLEIKKGPKEI-PRGVVRA---LVAIAEHEDDRLRRICLETLCELA-LLNPE  141 (371)
T ss_pred             hcccCCChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHH---HHHHHhCCchHHHHHHHHHHHHHH-hhCHH
Confidence            33554 455699999999999986  44444 4444444   445556677889999999999988 46675

>KOG0946|consensus

Probab=86.14  E-value=44  Score=35.20  Aligned_cols=122  Identities=13%  Similarity=0.197  Sum_probs=75.3

Q ss_pred             chhhhHHHHHHHHHHH----hc-cCcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCC--CCCC-------hh
Q psy10471          3 SDKNLGIKIVQQIAIL----MG-CAILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGP--EYVS-------AR   67 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~----~g-~~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~--~~i~-------~~   67 (318)
                      .||+.|++.|-.+|.-    .| .+|.|.++.|=       +| .++..-.+++.|+-.+-....  +.++       .-
T Consensus        38 eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~-------~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g  110 (970)
T KOG0946|consen   38 EDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQ-------RDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLG  110 (970)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHh-------hccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHH
Confidence            6899999988888763    23 35666443321       44 357777778888777765442  1111       12


Q ss_pred             hHHHHHH--------HHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---------HHHHHHHHhhcccchhhHHHHHHHH
Q psy10471         68 EWMRICF--------ELLELLKAHKKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQERQNRVCTTVAI  130 (318)
Q Consensus        68 ~~~~il~--------~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---------~~l~~Ll~~Lk~~~~~~R~~~~~ai  130 (318)
                      +|..-.+        -|+..+...++.||+.++.-+..+.+.-|+.         .-+..+|..|+|.....|....--+
T Consensus       111 ~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL  190 (970)
T KOG0946|consen  111 LWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLL  190 (970)
T ss_pred             HHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHH
Confidence            2322211        1445556677889999999998888766654         1356688888876556777665533


Q ss_pred             H
Q psy10471        131 A  131 (318)
Q Consensus       131 ~  131 (318)
                      +
T Consensus       191 ~  191 (970)
T KOG0946|consen  191 S  191 (970)
T ss_pred             H
Confidence            3

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=85.68  E-value=20  Score=33.53  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=28.7

Q ss_pred             ccccchhhhHHHHHHHHhc----CC------HHHHHHHHHHHHHHhhhh
Q psy10471        175 MGKDYIYAVTPLLEDALMD----RD------LVHRQTACATIKHMALGV  213 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~----~~------~~~R~~a~~~i~~la~~~  213 (318)
                      -..||+++++|.+..++..    .+      -.+|..|+.+++.+....
T Consensus       270 FvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F  318 (450)
T COG5095         270 FVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNF  318 (450)
T ss_pred             eecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhh
Confidence            4679999999999998842    11      247888888887765544

>KOG2149|consensus

Probab=85.52  E-value=12  Score=36.11  Aligned_cols=75  Identities=13%  Similarity=0.179  Sum_probs=55.0

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD  106 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~  106 (318)
                      +.-+++.+++.+.+||..|+..|-++-.+-+... ....-.++..+.++.-|.+..+|.+.+..+-.+.-.++|..
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~  134 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED  134 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence            3346667788899999999999999887622221 34555666777788888888899999888877665566553

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=84.87  E-value=21  Score=29.49  Aligned_cols=93  Identities=10%  Similarity=-0.044  Sum_probs=61.1

Q ss_pred             HHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc-hhHHHHHHHhhhhcccC-CChHHHH
Q psy10471        165 LSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC-EDALTHLLNYVWPNIFE-TSPHLVQ  242 (318)
Q Consensus       165 l~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~-~~~i~hll~~l~~~i~d-~~~~vr~  242 (318)
                      +..+++.++.. ...-...+-.+..-+.++++++...+..+++.++.+|+..-+ +-.=..+++.+...+.+ ..++|+.
T Consensus        21 il~icD~I~~~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~   99 (144)
T cd03568          21 ILDVCDKVKSD-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKE   99 (144)
T ss_pred             HHHHHHHHhcC-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHH
Confidence            34555555443 333355777888888899999999999999999998842111 11111233333333333 6789999


Q ss_pred             HHHHHHHHHHHHcChh
Q psy10471        243 AFMDAVEGLRVALGPV  258 (318)
Q Consensus       243 ~ii~~i~~i~~alG~~  258 (318)
                      .+++.+..-+.+...+
T Consensus       100 kil~li~~W~~~f~~~  115 (144)
T cd03568         100 KLREVVKQWADEFKND  115 (144)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999998888643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=84.76  E-value=38  Score=32.46  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=29.6

Q ss_pred             hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471        220 DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       220 ~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~  259 (318)
                      +.+...+...-.+...+++.+|..++.++..+..+...+.
T Consensus       270 ~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~  309 (372)
T PF12231_consen  270 EHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNE  309 (372)
T ss_pred             HhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence            4445555554445556788999999999999999988743

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2549|consensus

Probab=84.72  E-value=5.1  Score=40.00  Aligned_cols=78  Identities=14%  Similarity=0.143  Sum_probs=57.1

Q ss_pred             CcCCChHhHHHHHHhhc----------CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc--hHHHHH
Q psy10471         22 AILPHLKNLVEIIEHGL----------VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH--KKAIRR   89 (318)
Q Consensus        22 ~~~P~l~~l~~~l~~~l----------~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~--~~~vR~   89 (318)
                      .+.||+.+|||-++-.+          .|.|+-.|.-|+..+++++...+..- ..--.+|...+.+.+.|+  ..+..-
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y-~~L~~Rit~tl~k~l~D~~~~~st~Y  359 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLY-NNLQPRITRTLSKALLDNKKPLSTHY  359 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCCCCCchhhh
Confidence            59999999999976432          24589999999999999998766432 235566777788888884  345666


Q ss_pred             HHHHHHHHHHh
Q psy10471         90 ATVNTFGYIAK  100 (318)
Q Consensus        90 ~av~~lg~la~  100 (318)
                      =|+.++..++.
T Consensus       360 Gai~gL~~lg~  370 (576)
T KOG2549|consen  360 GAIAGLSELGH  370 (576)
T ss_pred             hHHHHHHHhhh
Confidence            67777766554

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=84.67  E-value=35  Score=32.00  Aligned_cols=151  Identities=15%  Similarity=0.235  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHhhhCHH------HH----HHHH
Q psy10471         45 VQENCIDLVGRIADRGPE--YVSAREWMRICFELLELLKAHKKAIRR-ATVNTFGYIAKAIGPH------DV----LATL  111 (318)
Q Consensus        45 vR~aa~~~LG~la~~~~~--~i~~~~~~~il~~Ll~~L~d~~~~vR~-~av~~lg~la~~igp~------~~----l~~L  111 (318)
                      +|+..++.+....+.+.+  .+...-..|++..++..=+.+.+..|. +++..++.+.+.++..      .+    ....
T Consensus        43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T  122 (319)
T PF08767_consen   43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT  122 (319)
T ss_dssp             HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            567778888888876663  111233445555555444445666664 4777777777777752      22    3333


Q ss_pred             HHhhcc--cch-hhHHHHHHHHHHHHhhcCc---------c-cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc---c
Q psy10471        112 LNNLKV--QER-QNRVCTTVAIAIVAETCSP---------F-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE---M  175 (318)
Q Consensus       112 l~~Lk~--~~~-~~R~~~~~ai~~i~~~~~p---------~-~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~---~  175 (318)
                      ++..+.  .++ .+|.....-+..+...|.+         + .++.+++-.++.++.++-...++++..+++....   .
T Consensus       123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~  202 (319)
T PF08767_consen  123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPE  202 (319)
T ss_dssp             HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHH
T ss_pred             HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            334432  233 5787777777666666653         1 5667777788999999988788888777766544   1


Q ss_pred             -----cccchhhhHHHHHHHHhcCC
Q psy10471        176 -----GKDYIYAVTPLLEDALMDRD  195 (318)
Q Consensus       176 -----~~~yl~~iiP~l~~~l~~~~  195 (318)
                           +..|+-.++-.+..++.|.+
T Consensus       203 ~~~~F~~~y~~~il~~if~vltD~~  227 (319)
T PF08767_consen  203 FANQFYQQYYLDILQDIFSVLTDSD  227 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCcc
Confidence                 44455556666667777776

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG0168|consensus

Probab=84.65  E-value=59  Score=34.58  Aligned_cols=187  Identities=14%  Similarity=0.134  Sum_probs=105.8

Q ss_pred             HHHHhhhc-hHHHHHHHHHHHHHHHhhhCH---------HHHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc-----
Q psy10471         76 LLELLKAH-KKAIRRATVNTFGYIAKAIGP---------HDVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP-----  139 (318)
Q Consensus        76 Ll~~L~d~-~~~vR~~av~~lg~la~~igp---------~~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p-----  139 (318)
                      ||+-|+.. .++.+-+|+.-+.+.-. ||-         ..+++.|+..|+.+.. ..-..+.+|+..++|.|-+     
T Consensus       172 LL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v  250 (1051)
T KOG0168|consen  172 LLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV  250 (1051)
T ss_pred             HHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence            34444442 45555555555555442 331         2578888888887766 4545567788888887764     


Q ss_pred             --ccchHHHHHHhcC-CcchHHHHHHHHHHHHHHHHccccccc--hhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        140 --FTVLPALMNEYRV-PELNVQNGVLKALSFLFEYIGEMGKDY--IYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       140 --~~vip~L~~~~~d-~~~~v~~~vl~al~~i~~~lg~~~~~y--l~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                        +.++|.|...+.. +-..+-+..++|+..|.+-.+..|-.-  +..++ .+.+++.   .+..+.|+.........+.
T Consensus       251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~L-sylDFFS---i~aQR~AlaiaaN~Cksi~  326 (1051)
T KOG0168|consen  251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVL-SYLDFFS---IHAQRVALAIAANCCKSIR  326 (1051)
T ss_pred             ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHH-HHHHHHH---HHHHHHHHHHHHHHHhcCC
Confidence              3589999988755 445677888888888877655322110  11111 1223331   2333333333333333332


Q ss_pred             CCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc--ChhhHHHhHHHHh
Q psy10471        215 GFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL--GPVRILQYVLQGL  268 (318)
Q Consensus       215 ~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al--G~~~~~~~vl~~l  268 (318)
                       .+..+.+..-+|.+.+-+...+.....++.-++.+++...  |++.|.+-.=.+|
T Consensus       327 -sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dL  381 (1051)
T KOG0168|consen  327 -SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDL  381 (1051)
T ss_pred             -CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhH
Confidence             1223455556676666665567777778888888888776  4454444333333

>KOG1517|consensus

Probab=84.55  E-value=22  Score=38.45  Aligned_cols=67  Identities=21%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             hHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhh------CCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhh
Q psy10471         29 NLVEIIEHGLVDE-QQKVQENCIDLVGRIADR------GPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKA  101 (318)
Q Consensus        29 ~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~------~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~  101 (318)
                      +++.+.+..++|. +|-.|.=++-+||+|=+.      .|-...      -...|+..|+|+.+.||.+|+-+||.+...
T Consensus       599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~------AhekL~~~LsD~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDN------AHEKLILLLSDPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccccc------HHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence            5677888999994 799999999999998653      332111      223456777999999999999999987653

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=83.33  E-value=11  Score=37.88  Aligned_cols=126  Identities=17%  Similarity=0.254  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhccC-cCCChHhHHHHHHhhcCCC--CHHHHHHHHHHH---HHHHhhCCCCCChhhHHHHHH-HHHHHhh
Q psy10471          9 IKIVQQIAILMGCA-ILPHLKNLVEIIEHGLVDE--QQKVQENCIDLV---GRIADRGPEYVSAREWMRICF-ELLELLK   81 (318)
Q Consensus         9 l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l~d~--~~~vR~aa~~~L---G~la~~~~~~i~~~~~~~il~-~Ll~~L~   81 (318)
                      .++++-|.....+. ..   +.++.++...+...  +.+.|..++.-+   .......++.+ ...+-+.+. .++..+.
T Consensus       301 ~kIL~~L~kS~~Aa~~~---~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~-l~~l~~~i~~~g~p~~~  376 (501)
T PF13001_consen  301 EKILSLLSKSVIAATSF---PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQI-LKLLRPVILSQGWPLIQ  376 (501)
T ss_pred             HHHHHHHHHhHHHHhCC---ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHH-HHHHHHHHHhcCccccc
Confidence            35666666643332 33   44555555566665  678899999988   77777666543 455555444 5666663


Q ss_pred             ------h--chHHHHHHHHHHHHHHHhhhCH-----HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC
Q psy10471         82 ------A--HKKAIRRATVNTFGYIAKAIGP-----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS  138 (318)
Q Consensus        82 ------d--~~~~vR~~av~~lg~la~~igp-----~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~  138 (318)
                            .  .....|..+.+++|.+++....     ..++.-|++.|.+++...|..+-.|++.++..+.
T Consensus       377 ~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~  446 (501)
T PF13001_consen  377 DSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFK  446 (501)
T ss_pred             cccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHh
Confidence                  1  3456899999999999987653     3678889999977777899999999987665443

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.30  E-value=23  Score=36.01  Aligned_cols=126  Identities=17%  Similarity=0.249  Sum_probs=78.8

Q ss_pred             CCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471        152 VPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP  231 (318)
Q Consensus       152 d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~  231 (318)
                      .++..|+.-.++-+.-+....|..-..-.+.++-.+...+-|+.+.+|..|..+++..-+--  ...+..+..++..+++
T Consensus       102 skdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~--~neen~~~n~l~~~vq  179 (885)
T COG5218         102 SKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME--LNEENRIVNLLKDIVQ  179 (885)
T ss_pred             CcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHh
Confidence            34566776666666666666554333344566677777777999999999999998874322  1234455566666666


Q ss_pred             cccCCChHHHHHHHHHH-----------HHHHHHcChhh--HHHhHHHHh-----ccccccchHHHHH
Q psy10471        232 NIFETSPHLVQAFMDAV-----------EGLRVALGPVR--ILQYVLQGL-----FHPARKVRDVYWK  281 (318)
Q Consensus       232 ~i~d~~~~vr~~ii~~i-----------~~i~~alG~~~--~~~~vl~~l-----~~~a~~~r~~~w~  281 (318)
                      +  |++.+||..++-.|           |+...+=|...  +-.+++|-+     +.-.++++-.-|.
T Consensus       180 n--DPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewg  245 (885)
T COG5218         180 N--DPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWG  245 (885)
T ss_pred             c--CcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhc
Confidence            6  68999999887654           33333333332  566677776     2233455545554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=83.30  E-value=9.6  Score=39.38  Aligned_cols=92  Identities=15%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             hhhHHHHHHHHHHHhcc--CcCC----ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGC--AILP----HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELL   77 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~--~~~P----~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll   77 (318)
                      |+..+++.+-+..-...  .|.-    -++.++.++.+-+.|.+|-+|.-|+.-+..+.+...-+.. -.++.+++.   
T Consensus       316 Rc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~---  392 (1128)
T COG5098         316 RCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVG---  392 (1128)
T ss_pred             HHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHH---
Confidence            56667777766654322  2444    5677888899999999999999999999999985544433 466666655   


Q ss_pred             HHhhhchHHHHHHHHHHHHHHH
Q psy10471         78 ELLKAHKKAIRRATVNTFGYIA   99 (318)
Q Consensus        78 ~~L~d~~~~vR~~av~~lg~la   99 (318)
                      +.++|...-|||.|++-+..+-
T Consensus       393 r~lqDrss~VRrnaikl~SkLL  414 (1128)
T COG5098         393 RRLQDRSSVVRRNAIKLCSKLL  414 (1128)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHH
Confidence            7779988889999999987754

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=83.06  E-value=56  Score=33.07  Aligned_cols=173  Identities=16%  Similarity=0.152  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-Ccc-cchHHHHHHhcCC----cchHHH
Q psy10471         86 AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-SPF-TVLPALMNEYRVP----ELNVQN  159 (318)
Q Consensus        86 ~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-~p~-~vip~L~~~~~d~----~~~v~~  159 (318)
                      ..|...++++...+  .  ...+..+.+.++..+... ...+..+..+.... .|+ .++..+....+++    +..++.
T Consensus       341 ~~r~~~~Dal~~~G--T--~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~  415 (574)
T smart00638      341 KARRIFLDAVAQAG--T--PPALKFIKQWIKNKKITP-LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRE  415 (574)
T ss_pred             HHHHHHHHHHHhcC--C--HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHH
Confidence            35555666655544  2  223444444444332211 11223333333332 354 6666677766654    234556


Q ss_pred             HHHHHHHHHHHHHcc---ccccc-hhhhHHHHHHH----HhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471        160 GVLKALSFLFEYIGE---MGKDY-IYAVTPLLEDA----LMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP  231 (318)
Q Consensus       160 ~vl~al~~i~~~lg~---~~~~y-l~~iiP~l~~~----l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~  231 (318)
                      .++-+++.+....-.   .+.+. +..++|.+.+.    ....+...+..++.++|       ..|....+..+.+++. 
T Consensus       416 sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-------N~g~~~~i~~l~~~l~-  487 (574)
T smart00638      416 SALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG-------NAGHPSSIKVLEPYLE-  487 (574)
T ss_pred             HHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-------ccCChhHHHHHHHhcC-
Confidence            666666666653211   11111 13444444444    44556666777777774       4467777777877763 


Q ss_pred             cccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcccc
Q psy10471        232 NIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPA  272 (318)
Q Consensus       232 ~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~~a  272 (318)
                      .-.+.++.+|..++.++..++. .-++...+.+++.+...+
T Consensus       488 ~~~~~~~~iR~~Av~Alr~~a~-~~p~~v~~~l~~i~~n~~  527 (574)
T smart00638      488 GAEPLSTFIRLAAILALRNLAK-RDPRKVQEVLLPIYLNRA  527 (574)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHcCCC
Confidence            3234567899999999998865 346778888888886533

>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT

Probab=83.01  E-value=1.3  Score=25.43  Aligned_cols=26  Identities=27%  Similarity=0.557  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Q psy10471         87 IRRATVNTFGYIAKAIGPHDVLATLLNNLK  116 (318)
Q Consensus        87 vR~~av~~lg~la~~igp~~~l~~Ll~~Lk  116 (318)
                      ||++|.+++|+++.    ...++.|++.|+
T Consensus         1 VR~~Aa~aLg~igd----~~ai~~L~~~L~   26 (27)
T PF03130_consen    1 VRRAAARALGQIGD----PRAIPALIEALE   26 (27)
T ss_dssp             HHHHHHHHHGGG-S----HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCC----HHHHHHHHHHhc
Confidence            68999999998775    456777776665

Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=82.17  E-value=20  Score=29.21  Aligned_cols=99  Identities=14%  Similarity=0.204  Sum_probs=67.1

Q ss_pred             HHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC----hhhHHHHHHHHHHHhhh--chHH-
Q psy10471         14 QIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS----AREWMRICFELLELLKA--HKKA-   86 (318)
Q Consensus        14 ~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~----~~~~~~il~~Ll~~L~d--~~~~-   86 (318)
                      +++...... .-...+.+..|...|++.+|.++.-|+..|-.+..++|+.+.    -++|+..+..+   +++  .... 
T Consensus        28 ~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l---~~~~~~~~~~  103 (140)
T PF00790_consen   28 EICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKL---IKSKKTDPET  103 (140)
T ss_dssp             HHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHH---HHHTTTHHHS
T ss_pred             HHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHH---HccCCCCchh
Confidence            344433333 444578888899999999999999999999999999985331    25566665544   455  2222 


Q ss_pred             -HHHHHHHHHHHHHhhhC---HHHHHHHHHHhhc
Q psy10471         87 -IRRATVNTFGYIAKAIG---PHDVLATLLNNLK  116 (318)
Q Consensus        87 -vR~~av~~lg~la~~ig---p~~~l~~Ll~~Lk  116 (318)
                       ||.-++..+..-+...+   .+..+..+-+.||
T Consensus       104 ~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~Lk  137 (140)
T PF00790_consen  104 PVKEKILELLQEWAEAFKSDPELSLIQDTYKRLK  137 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHH
Confidence             89999998888887773   2344555555544

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=81.88  E-value=44  Score=31.03  Aligned_cols=176  Identities=18%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHH-----HHHHHHHHhhhchHHHHHHHHHHHHHH
Q psy10471         25 PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMR-----ICFELLELLKAHKKAIRRATVNTFGYI   98 (318)
Q Consensus        25 P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~-----il~~Ll~~L~d~~~~vR~~av~~lg~l   98 (318)
                      -|..-++.++-..  ..++.+.+..+..++.+.+..+.... ..++..     .+..+++++..++..++..|...++.+
T Consensus        55 ~~~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   55 QYASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSL  132 (312)
T ss_dssp             -------HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3444444433333  45788999999999999987774432 111111     344566666777788999999999988


Q ss_pred             HhhhCH---H---HHHHHHHHhhcccch----hhHHHHHHHHHHHHh--h----cCcccchHHHHHHh-----cCCcchH
Q psy10471         99 AKAIGP---H---DVLATLLNNLKVQER----QNRVCTTVAIAIVAE--T----CSPFTVLPALMNEY-----RVPELNV  157 (318)
Q Consensus        99 a~~igp---~---~~l~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~--~----~~p~~vip~L~~~~-----~d~~~~v  157 (318)
                      ...-++   .   ++++.+++.++....    .....++.+++.+..  .    +.....++.+++.+     .+....+
T Consensus       133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~  212 (312)
T PF03224_consen  133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGI  212 (312)
T ss_dssp             HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence            864432   2   467777777764322    333455566655431  1    11135666777777     2333344


Q ss_pred             H-----HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC--HHHHHHHHHH
Q psy10471        158 Q-----NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD--LVHRQTACAT  205 (318)
Q Consensus       158 ~-----~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~  205 (318)
                      |     ..++-.+++--+..+.....|   ++|.+.++++...  ..+|-..+..
T Consensus       213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l  264 (312)
T PF03224_consen  213 QLQYQALLCLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAIL  264 (312)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHH
Confidence            3     223333443333333333334   8899999997664  4555544443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=80.56  E-value=5.2  Score=34.94  Aligned_cols=108  Identities=19%  Similarity=0.125  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC
Q psy10471        157 VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET  236 (318)
Q Consensus       157 v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~  236 (318)
                      .-..+++.++.+|+.+|..+.+++..++-.+.+.-.+.+..+|+.+-.+++.....+   |-+..+ .++|.-+++ -+.
T Consensus        16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~am---Gpe~vL-~~lPLnl~~-~~~   90 (198)
T PF08161_consen   16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAM---GPEQVL-SILPLNLDN-ADD   90 (198)
T ss_pred             HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHC---CHHHHH-HHCCCCccC-CCc
Confidence            447799999999999998887777777777777767777889999999888887776   443333 333432221 112


Q ss_pred             ChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc
Q psy10471        237 SPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF  269 (318)
Q Consensus       237 ~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~  269 (318)
                      ...-|.-.+-.+..-...-.-.+|..+++|..-
T Consensus        91 ~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~  123 (198)
T PF08161_consen   91 SQPGRAWLLPLLRDHIRNASLSFFVEEFLPLAR  123 (198)
T ss_pred             CCcccchhHHHHHHhccCCChHHHHHHHHHHHH
Confidence            222344444444443222233679999999883

>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans

Probab=80.48  E-value=26  Score=27.62  Aligned_cols=99  Identities=17%  Similarity=0.260  Sum_probs=48.0

Q ss_pred             ChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCC-h-hhHHHHHHHHHHHhhh---chH-HHHHHHHHHHHHH
Q psy10471         26 HLKNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVS-A-REWMRICFELLELLKA---HKK-AIRRATVNTFGYI   98 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~-~-~~~~~il~~Ll~~L~d---~~~-~vR~~av~~lg~l   98 (318)
                      |+++++..+.   .|. ++...+.|+++...+....+.+.. . .....++..|+.+-+.   +++ ..|..|+.++.. 
T Consensus         4 YlrDll~~L~---~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v-   79 (114)
T PF10193_consen    4 YLRDLLEYLR---SDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVV-   79 (114)
T ss_dssp             -HHHHHHHHT---------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHh---cCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHH-
Confidence            4455554443   233 577789999999999987776443 2 3333344444433332   344 478888887765 


Q ss_pred             HhhhCHHHHHHHHHHhhcccch--hhHHHHHHHHH
Q psy10471         99 AKAIGPHDVLATLLNNLKVQER--QNRVCTTVAIA  131 (318)
Q Consensus        99 a~~igp~~~l~~Ll~~Lk~~~~--~~R~~~~~ai~  131 (318)
                         ..|..+.+.|.+.+-..++  +.|.....+++
T Consensus        80 ---~~P~~~~~~L~~~f~~~~~Sl~qR~~iL~~l~  111 (114)
T PF10193_consen   80 ---AAPEKVAPYLTEEFFSGDYSLQQRMSILSALS  111 (114)
T ss_dssp             ---HSGGGHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred             ---HhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence               3455555555555544443  56666555543

These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.

>KOG2149|consensus

Probab=80.23  E-value=48  Score=31.98  Aligned_cols=113  Identities=16%  Similarity=0.152  Sum_probs=78.0

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcC
Q psy10471         73 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV  152 (318)
Q Consensus        73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d  152 (318)
                      +.+|+..++-.+..+|..|+.++-.+-.. -|..+..++-..+.                            -+.....|
T Consensus        60 lkeLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~----------------------------~~~~~i~D  110 (393)
T KOG2149|consen   60 LKELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQ----------------------------KLRELILD  110 (393)
T ss_pred             HHHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHH----------------------------HhhhhhcC
Confidence            34567777888999999999999887765 45433222222221                            02222345


Q ss_pred             CcchHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        153 PELNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      .+..+|....+.+..+.-..+. ...+++.-++|.+.-++++..+.+|.-+...+..++..+.
T Consensus       111 ~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~  173 (393)
T KOG2149|consen  111 DDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP  173 (393)
T ss_pred             ccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence            5667777777777774433333 3578888999999999999999999988888888877774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-35
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-10
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-08
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	3e-16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	4e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-05
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	5e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  133 bits (336), Expect = 3e-35
 Identities = 38/205 (18%), Positives = 77/205 (37%), Gaps = 13/205 (6%)

Query: 16  AILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE 75
            +     I    ++L+  I     D + +V+   I+ +  +A +        +   +C  
Sbjct: 389 CVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC-- 446

Query: 76  LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQ----NRVCTTVAIA 131
            +  L  H  AIR A  +    + +  G     AT++  +          +R+ T   I 
Sbjct: 447 -MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 132 IVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187
           +++E C        +LP ++     P  NV+  V K+L  +   +          V P+L
Sbjct: 506 VLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPIL 563

Query: 188 EDALMDRDLVHRQTACATIKHMALG 212
           E    D+D+  +  A   +  ++L 
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLSLA 588

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 41/317 (12%), Positives = 98/317 (30%), Gaps = 53/317 (16%)

Query: 1   MSSDKNLGIKIVQQIAILMGCAILP-HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR 59
           +  +  + + + +Q+         P ++  L+  +E     E+  V++  ++ +  I+  
Sbjct: 58  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117

Query: 60  GPEY-----------------------------------VSAREWMRICFELLELLKAHK 84
                                                  VS+     +      L     
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDT 177

Query: 85  KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV----QERQNRVCTTVAIAIVAETCSPF 140
             +RRA  +  G  AK +   +V + ++         ++   R+    A   +A+     
Sbjct: 178 PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237

Query: 141 TVLPALMNEYRV----PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL 196
            +   +M   R         V+  V    + L + +G   +     + P  ++ + D + 
Sbjct: 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEA 295

Query: 197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE----TSPHLVQAFMDAVEGLR 252
             R  A   +K           +     +++ + P I E     + H+  A    + GL 
Sbjct: 296 EVRAAASHKVKEFC---ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352

Query: 253 VALGPVRILQYVLQGLF 269
             LG    ++++L    
Sbjct: 353 PILGKDNTIEHLLPLFL 369

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 33/253 (13%), Positives = 78/253 (30%), Gaps = 18/253 (7%)

Query: 25  PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR-GPEYVSAREWMRICFELLELLKAH 83
             +  ++  I+  + D  Q V+     ++  ++   G +         +    L  LK  
Sbjct: 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE----HLLPLFLAQLKDE 375

Query: 84  KKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQN----RVCTTVAIAIVAETCSP 139
              +R   ++    + + IG   +  +LL  +           R+     + ++A     
Sbjct: 376 CPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV 435

Query: 140 FT----VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD 195
                 +    M         ++      L  L E  G+  +     + P +     D +
Sbjct: 436 EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPN 493

Query: 196 LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL 255
            +HR T    I  ++      G +    H+L  V     +   ++      +++ +   L
Sbjct: 494 YLHRMTTLFCINVLSE---VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL 550

Query: 256 GPVRILQYVLQGL 268
               +   V   L
Sbjct: 551 DNSTLQSEVKPIL 563

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 28/202 (13%), Positives = 61/202 (30%), Gaps = 13/202 (6%)

Query: 76  LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL---LNNLKVQERQNRVCTTVAIAI 132
           L++ L+     +R  ++     IA A+G     + L   L +    E +  +     +  
Sbjct: 15  LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGT 74

Query: 133 VAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
                        +LP L +   V E  V++  +++L  +         +      PL++
Sbjct: 75  FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVK 132

Query: 189 DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248
                     R +AC          Y          L  Y      + +P + +A    +
Sbjct: 133 RLAGGDWFTSRTSACGLFSV----CYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 188

Query: 249 EGLRVALGPVRILQYVLQGLFH 270
                 L    +   ++    +
Sbjct: 189 GEFAKVLELDNVKSEIIPMFSN 210

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 76.3 bits (187), Expect = 3e-16
 Identities = 42/233 (18%), Positives = 96/233 (41%), Gaps = 16/233 (6%)

Query: 28  KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKA 86
           +++++ +   L D+   V +N I ++  IA    +         +  +L  LL K+    
Sbjct: 31  ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIP 85

Query: 87  IRRATVNTFGYIAKAIGPH--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLP 144
           + +     FG +AK        ++  L  N ++ + + ++  + A+  +A+  +P  +  
Sbjct: 86  LTQEIAKAFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMAS 144

Query: 145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACA 204
            + +   +     +   L AL+F+ E +GE    Y+    P + + L D D + R +A  
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI-EAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVE 203

Query: 205 TIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP 257
            + H+A         D L  ++      + +TS  + +   + +  L +  G 
Sbjct: 204 ALVHLATL------NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGH 250

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 16  AILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRIC 73
           AI  GC   ++P+L  L+  +   L D++  V+      + R A              + 
Sbjct: 385 AIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM 444

Query: 74  FELLELLKAHKKAIRRATVNTFGYIA----KAIGPH--DVLATLLNNLKVQERQNRVCTT 127
            ELL+ +    K ++ A  + F  +       + P+   +L TL+      + +N +   
Sbjct: 445 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILY 504

Query: 128 VAIAIVAETCSPFTVLPALMNEYRVP---ELNVQNGVLKALSFLFEYIGEMGKDYIYAVT 184
            AI  +A++       P  +     P   + N+     K L  L E +  +         
Sbjct: 505 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFL 564

Query: 185 PLLEDALMDR 194
           P  E  +  R
Sbjct: 565 PYCEP-VYQR 573

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.4 bits (104), Expect = 4e-05
 Identities = 20/191 (10%), Positives = 55/191 (28%), Gaps = 15/191 (7%)

Query: 75  ELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIA 131
           E L  +      IR         IA         D+L  L + L  ++         A+ 
Sbjct: 94  ECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQ 153

Query: 132 IVAETCSPF-----------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI 180
            + E  +              ++P  +  ++     +++  +  ++       +    +I
Sbjct: 154 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI 213

Query: 181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL 240
            +    L     D +   R+  C  +  +            + +++ Y+     +   ++
Sbjct: 214 DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENV 272

Query: 241 VQAFMDAVEGL 251
                +    L
Sbjct: 273 ALEACEFWLTL 283

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 47.0 bits (110), Expect = 6e-06
 Identities = 18/179 (10%), Positives = 63/179 (35%), Gaps = 3/179 (1%)

Query: 69   WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTV 128
             + +   +LE   +  + ++ A     G I+      + L  +L  +   + + +     
Sbjct: 854  QLELKSVILEAFSSPSEEVKSAASYALGSISVG-NLPEYLPFVLQEIT-SQPKRQYLLLH 911

Query: 129  AIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
            ++  +  + S   + P + N + +   + +       + + E +G++       + P L+
Sbjct: 912  SLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLK 971

Query: 189  DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA 247
              L+      R +    +K   +  +    +  L + +      + +   ++ +  +  
Sbjct: 972  GYLISGSSYARSSVVTAVKFT-ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVT 1029

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 42.4 bits (98), Expect = 2e-04
 Identities = 48/326 (14%), Positives = 101/326 (30%), Gaps = 39/326 (11%)

Query: 2   SSDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP 61
            S     I+ +  I+   G  I  +L+ ++ ++      +  +++E CI        R P
Sbjct: 228 MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287

Query: 62  EYVSAR--EWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE 119
           + V       + IC + L     +         N                   ++  +  
Sbjct: 288 KEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW 347

Query: 120 RQNRVCTTVAIAIVAETCSPF------TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG 173
           +  R      +  V  T          TV PAL++ ++  E NV+  V  A   L +   
Sbjct: 348 KV-RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406

Query: 174 EMG-------------------KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVY 214
            +                    +  +  +   L   + ++ +  RQ     +  +   + 
Sbjct: 407 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 466

Query: 215 GFGCEDALTHLLNYVWPNIFE------TSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268
           G     ALT  +  + P I        +S +L    +  +  +     P     +V   +
Sbjct: 467 G-----ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 521

Query: 269 FHPARKVRDVYWKIYNSLYIGGQDAL 294
                 V D ++KI +   +  Q  +
Sbjct: 522 PPVVACVGDPFYKITSEALLVTQQLV 547

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 40.9 bits (94), Expect = 5e-04
 Identities = 36/254 (14%), Positives = 81/254 (31%), Gaps = 21/254 (8%)

Query: 10   KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW 69
            ++    +  +G   + +L   +  +   +  + ++       L   I+      +     
Sbjct: 871  EVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKP-YV 929

Query: 70   MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129
              I   LL+  +  ++  R       G +   I P  +L  L   L       R     A
Sbjct: 930  ENIWALLLKHCECAEEGTRNVVAECLGKLTL-IDPETLLPRLKGYLISGSSYARSSVVTA 988

Query: 130  IA-IVAETCSPF-----TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 183
            +   +++   P        +   +     P+LNV+   L   +        + +D +  V
Sbjct: 989  VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048

Query: 184  TPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLV 241
             P L +    R           I+ + +G +    +D L            + ++    +
Sbjct: 1049 LPHLYNETKVRK--------ELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100

Query: 242  Q--AFMDAVE-GLR 252
                F++ VE GL+
Sbjct: 1101 DIFEFLNHVEDGLK 1114

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 28/219 (12%), Positives = 56/219 (25%), Gaps = 30/219 (13%)

Query: 12  VQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMR 71
            ++ A           K   + +   L D     + +   ++        + V       
Sbjct: 6   QKRKASKEYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--QDAVRL----- 58

Query: 72  ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIA 131
                +E         R       G I       D +  +LNN+ + ++   V  T   +
Sbjct: 59  ----AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIES 114

Query: 132 I----VAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL 187
                         ++            NV+     A+         +      A  PLL
Sbjct: 115 TAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAI-------SVINDK---ATIPLL 164

Query: 188 EDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLL 226
            + L D +   R  A       A+ +  +   D     +
Sbjct: 165 INLLKDPNGDVRNWAAF-----AININKYDNSDIRDCFV 198

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 26/204 (12%), Positives = 58/204 (28%), Gaps = 26/204 (12%)

Query: 15  IAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICF 74
           +A  +G     +L+     +   L      V    +  +  I++   E         +  
Sbjct: 625 LAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD-AMMN 683

Query: 75  ELLELLKAHK--KAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQNRVCT 126
            L +++      + ++ A ++ FG IA  IG        D++A  +     +     +  
Sbjct: 684 VLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEA 743

Query: 127 TVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL 186
                 V E          ++         +   V     F+                 +
Sbjct: 744 LDYQIKVLEAV--LDAYVGIVAGLHDKPEALFPYVGTIFQFI---------------AQV 786

Query: 187 LEDALMDRDLVHRQTACATIKHMA 210
            ED  +  +    + A   I  +A
Sbjct: 787 AEDPQLYSEDATSRAAVGLIGDIA 810

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 30/225 (13%), Positives = 70/225 (31%), Gaps = 29/225 (12%)

Query: 6   NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS 65
            L     ++I +++   ++P L  L       L   +  +    +  +G I     E   
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKL-------LGATELPIVTPALRAIGNIVTGTDEQTQ 310

Query: 66  AREWMRICFELLELLKAHKKAIRRATVNTFGYIA-------KAIGPHDVLATLLNNLKVQ 118
                        LL   K  I++    T   I        + +  H ++  L+  L   
Sbjct: 311 KVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370

Query: 119 ERQNRVCTTVAIAIVAETCSP--------FTVLPALMNEYRVPELNVQNGVLKALSFLFE 170
           + + +     AI       +           ++  LMN     +  +   +L A+S +F+
Sbjct: 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430

Query: 171 YIGEMGKDYIYAVT-------PLLEDALMDRDLVHRQTACATIKH 208
              ++G+    ++          +E      +    + +   I+ 
Sbjct: 431 AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 475

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.87
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.85
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.85
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.85
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.81
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.8
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.8
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.73
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.72
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.72
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.69
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.65
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.64
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.63
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.61
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.53
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.51
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.51
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.5
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.49
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.46
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.45
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.43
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.39
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.38
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.33
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.32
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.31
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.29
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.27
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.25
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.24
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.2
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.2
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.19
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.17
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.16
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.14
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.11
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.06
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.06
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.04
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.04
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.95
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.87
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.86
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.86
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	98.83
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	98.83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	98.81
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	98.81
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	98.79
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.78
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.77
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.77
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.76
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.73
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.71
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.67
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.66
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.63
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.62
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	98.62
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.57
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.54
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.52
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.49
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.45
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	98.44
3nmz_A	458	APC variant protein; protein-protein complex, arma	98.36
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	98.36
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.34
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.27
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	98.19
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	98.16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	98.16
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.07
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	98.03
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.99
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.98
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.84
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.69
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	97.66
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	97.65
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.56
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	97.51
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.46
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.39
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	97.32
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	97.22
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	97.2
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	97.07
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.76
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.52
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	96.48
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.42
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	96.38
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	95.75
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	94.68
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	94.61
3grl_A	651	General vesicular transport factor P115; vesicle t	93.15
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	92.92
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	92.83
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.37
1w9c_A	321	CRM1 protein, exportin 1; nuclear protein, nuclear	91.12
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	86.99
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	86.87
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	84.19
3grl_A	651	General vesicular transport factor P115; vesicle t	83.88
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	83.22
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	81.16

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.87  E-value=5.6e-21  Score=198.40  Aligned_cols=296  Identities=17%  Similarity=0.132  Sum_probs=224.3

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      +.|++++.++|.++...+..+.||+++++|.+.+.++|+++.||.+|++++|++++..++......+.+++..|++.++|
T Consensus       374 ~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d  453 (852)
T 4fdd_A          374 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD  453 (852)
T ss_dssp             HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhC
Confidence            46899999999999865557889999999999999999999999999999999998654322244566777778888899


Q ss_pred             chHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------c--cchHHHHH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------F--TVLPALMN  148 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~--~vip~L~~  148 (318)
                      +++.+|..|.++++.+++..++    +  .+++.|++.++..+......+..+++.+++..++      |  .++|.+++
T Consensus       454 ~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~  533 (852)
T 4fdd_A          454 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ  533 (852)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHH
Confidence            8899999999999999987764    3  5677777777755545555678888888765543      2  68898885


Q ss_pred             ---HhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC-----------------CHHHHHHHHHHHHH
Q psy10471        149 ---EYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR-----------------DLVHRQTACATIKH  208 (318)
Q Consensus       149 ---~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~-----------------~~~~R~~a~~~i~~  208 (318)
                         .++|++.+++ .++++++.+++.+|..+.+|++.++|.+.+.+++.                 +..+|..+.++++.
T Consensus       534 ~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~  612 (852)
T 4fdd_A          534 KWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSG  612 (852)
T ss_dssp             HHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHH
T ss_pred             HHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHH
Confidence               4567777774 79999999999999999999999999777776432                 56789999999999


Q ss_pred             HhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc----cccccch-HHH
Q psy10471        209 MALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF----HPARKVR-DVY  279 (318)
Q Consensus       209 la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~----~~a~~~r-~~~  279 (318)
                      ++..++ ..+...+  ..+++.++..+.++++++|+.+..+++.++.+.|.++  +.+.++|.+.    ++...+| ++-
T Consensus       613 l~~~l~-~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~  691 (852)
T 4fdd_A          613 LAEGLG-GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT  691 (852)
T ss_dssp             HHHHHG-GGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHH
T ss_pred             HHHHHh-HhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence            999884 3333333  3567777777777889999999999999999999743  4445555552    2333343 366


Q ss_pred             HHHHHHhhccccccccccCCCC
Q psy10471        280 WKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       280 w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      |.+..-. ...++.+.||++.+
T Consensus       692 ~alg~i~-~~~~~~~~p~~~~i  712 (852)
T 4fdd_A          692 WAIGEIS-IQMGIEMQPYIPMV  712 (852)
T ss_dssp             HHHHHHH-HHHGGGGGGGTHHH
T ss_pred             HHHHHHH-HHhhHhHHHHHHHH
Confidence            6654322 22234688886543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.85  E-value=2.6e-20  Score=183.70  Aligned_cols=272  Identities=12%  Similarity=0.090  Sum_probs=222.8

Q ss_pred             hhhHHHHHHHHHHHhccCcC--CChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          5 KNLGIKIVQQIAILMGCAIL--PHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~--P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      |..+..+++.++...|....  ++++.++|.+...++|+++.||.+++++||.++...|.....+.+.|+   +++.++|
T Consensus       298 r~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~---l~~~l~d  374 (588)
T 1b3u_A          298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPL---FLAQLKD  374 (588)
T ss_dssp             HHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHH---HHHHHTC
T ss_pred             HHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHH---HHHHhCC
Confidence            67888899999987766543  678999999999999999999999999999999876542112344444   4466789


Q ss_pred             chHHHHHHHHHHHHHHHhhhCHH----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCc
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGPH----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPE  154 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~  154 (318)
                      +++.||..++.+++.+.+.+|+.    .+++.+...+++++.++|..++.+++.++..+++    -.++|.+++.++|++
T Consensus       375 ~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  454 (588)
T 1b3u_A          375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV  454 (588)
T ss_dssp             SCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS
T ss_pred             CchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc
Confidence            88899999999999999988864    3567777777776778999999999988877664    268899999999999


Q ss_pred             chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471        155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF  234 (318)
Q Consensus       155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~  234 (318)
                      .+++..+++++..+++.+|..  .+.+.++|.+.+++.+.+..+|..++.+++.++..+   |.+....++++.++..+.
T Consensus       455 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~  529 (588)
T 1b3u_A          455 YAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC---GQDITTKHMLPTVLRMAG  529 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHTHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhCC
Confidence            999999999999999999874  357889999999999999999999999999998876   445566778888888888


Q ss_pred             CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc----ccccchHHHHHHHH
Q psy10471        235 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH----PARKVRDVYWKIYN  284 (318)
Q Consensus       235 d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~----~a~~~r~~~w~i~~  284 (318)
                      |++++||..++.+++.++..+|.+++.+.++|.+..    .+..||+.-...++
T Consensus       530 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~  583 (588)
T 1b3u_A          530 DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALT  583 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHH
Confidence            999999999999999999999998877788887732    34455554444443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.85  E-value=1.5e-20  Score=185.40  Aligned_cols=270  Identities=14%  Similarity=0.175  Sum_probs=213.3

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |+++..+++.++...|..   ..+.++|.+...++|+++.||.+|+.++|.+++..+......++.|.   ++..++|++
T Consensus       143 R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~---l~~~~~d~~  216 (588)
T 1b3u_A          143 RTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPM---FSNLASDEQ  216 (588)
T ss_dssp             HHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHH---HHHHHTCSC
T ss_pred             HHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHH---HHHHhcCCc
Confidence            566666666666544322   35678888889999999999999999999999876532102344444   456668988


Q ss_pred             HHHHHHHHHHHHHHHhhhCHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcch
Q psy10471         85 KAIRRATVNTFGYIAKAIGPHD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELN  156 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp~~----~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~  156 (318)
                      ..+|..|+++++.+++.+++..    +++.+.+.+++++.++|..++.+++.++..+++    ..++|.+++.++|++.+
T Consensus       217 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  296 (588)
T 1b3u_A          217 DSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE  296 (588)
T ss_dssp             HHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHH
Confidence            8999999999999999888753    455555566666668999999999988877664    37899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccccc--cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471        157 VQNGVLKALSFLFEYIGEMGK--DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF  234 (318)
Q Consensus       157 v~~~vl~al~~i~~~lg~~~~--~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~  234 (318)
                      ++..+++++..+.+.+|....  .|++.++|.+...+++.+..+|+.++.+++.++..+   |.+....++++.+...+.
T Consensus       297 vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~l~p~l~~~l~  373 (588)
T 1b3u_A          297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLK  373 (588)
T ss_dssp             HHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH---CHHHHHHHTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHHHHhC
Confidence            999999999999998876433  578999999999999999999999999999998877   455556678888888888


Q ss_pred             CCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc----cccccchHHHHHHH
Q psy10471        235 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF----HPARKVRDVYWKIY  283 (318)
Q Consensus       235 d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~----~~a~~~r~~~w~i~  283 (318)
                      |++++||..++.+++.++..+|.+.+.+.++|.+.    +++.++|......+
T Consensus       374 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l  426 (588)
T 1b3u_A          374 DECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYM  426 (588)
T ss_dssp             CSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            89999999999999999999998776666666663    33445665444444

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.85  E-value=4e-20  Score=190.57  Aligned_cols=297  Identities=13%  Similarity=0.114  Sum_probs=231.0

Q ss_pred             chhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHh
Q psy10471          3 SDKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELL   80 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L   80 (318)
                      +.|++++.++|.++...+ ..+.||+++++|.+.+.++|+++.||.++++++|++++..++.+. .+.+.+++..+++.+
T Consensus       384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l  463 (861)
T 2bpt_A          384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL  463 (861)
T ss_dssp             HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh
Confidence            358899999999986333 347899999999999999999999999999999999987654332 345566667777888


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhC--------HH--HHHHHHHHhhcccc--hhhHHHHHHHHHHHHhhcCc----c--cc
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIG--------PH--DVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCSP----F--TV  142 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~ig--------p~--~~l~~Ll~~Lk~~~--~~~R~~~~~ai~~i~~~~~p----~--~v  142 (318)
                      +++ +.+|..|.++++.+++.++        |+  .+++.|++.++..+  ..+|..+..+++.++..++.    +  .+
T Consensus       464 ~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l  542 (861)
T 2bpt_A          464 QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI  542 (861)
T ss_dssp             TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred             ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHH
Confidence            886 7899999999999998765        43  56788888887433  47899999999988766553    2  67


Q ss_pred             hHHHHHHhcCC---------------cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCH-HHHHHHHHHH
Q psy10471        143 LPALMNEYRVP---------------ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDL-VHRQTACATI  206 (318)
Q Consensus       143 ip~L~~~~~d~---------------~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~-~~R~~a~~~i  206 (318)
                      +|.+++.+.+.               ..+++..+++++..+++.+|..+.+|++.++|.+...+.+.+. .+|..+..++
T Consensus       543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l  622 (861)
T 2bpt_A          543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI  622 (861)
T ss_dssp             HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHH
Confidence            77777776532               3456789999999999999999999999999999999988877 8999999999


Q ss_pred             HHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh----cccc--ccchHH
Q psy10471        207 KHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL----FHPA--RKVRDV  278 (318)
Q Consensus       207 ~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l----~~~a--~~~r~~  278 (318)
                      +.++...+ .++...+..+++.+...+.++++++|..++.+++.++.++|.++  +.+.+++.+    -++.  +.+|..
T Consensus       623 ~~l~~~~~-~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~  701 (861)
T 2bpt_A          623 SALAASLG-KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA  701 (861)
T ss_dssp             HHHHHHHG-GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred             HHHHHHHh-hhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHH
Confidence            99988773 33455667777777777777888999999999999999999643  333444444    2332  567777


Q ss_pred             HHHHHHHhhccccccccccCCCC
Q psy10471        279 YWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       279 ~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      ..+.+..+....++.|.||+|.+
T Consensus       702 ~~~~l~~l~~~~~~~~~~~l~~~  724 (861)
T 2bpt_A          702 VLSVFGDIASNIGADFIPYLNDI  724 (861)
T ss_dssp             HHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHH
Confidence            76666555544456888886654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.81  E-value=5.8e-18  Score=174.37  Aligned_cols=262  Identities=15%  Similarity=0.147  Sum_probs=210.1

Q ss_pred             hhhHHHHHHHHHHHhccCc--CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC----CCCChhhHHHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAI--LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP----EYVSAREWMRICFELLE   78 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~--~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~----~~i~~~~~~~il~~Ll~   78 (318)
                      |.+++.++|+++...+..+  .+++++++|.++..++|+ +.||.+|+++++.+++..+    +.+ .+.+.+++..|++
T Consensus       428 r~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l-~~~~~~il~~L~~  505 (861)
T 2bpt_A          428 KETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI-YNFYPALVDGLIG  505 (861)
T ss_dssp             HHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG-GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhh-HHHHHHHHHHHHH
Confidence            6678889999999888765  789999999999999986 9999999999999998765    222 3556667777888


Q ss_pred             Hhhh--chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhccc---------------chhhHHHHHHHHHHHHh
Q psy10471         79 LLKA--HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQ---------------ERQNRVCTTVAIAIVAE  135 (318)
Q Consensus        79 ~L~d--~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~---------------~~~~R~~~~~ai~~i~~  135 (318)
                      .+++  .+..+|.++++++|.+++..++.      .+++.+++.+...               ....|..+..+++.++.
T Consensus       506 ~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~  585 (861)
T 2bpt_A          506 AANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIR  585 (861)
T ss_dssp             HHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            8874  44689999999999999887742      3455555555421               12466677788877765


Q ss_pred             hcC----cc--cchHHHHHHhcCCcc-hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy10471        136 TCS----PF--TVLPALMNEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKH  208 (318)
Q Consensus       136 ~~~----p~--~vip~L~~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~  208 (318)
                      ..+    |+  .++|.+++.+++++. .++..++.++..+++..|..+.+|++.++|.+.+.+++.+..+|..+..+++.
T Consensus       586 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~  665 (861)
T 2bpt_A          586 KSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIAD  665 (861)
T ss_dssp             HCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            544    44  688889999988776 89999999999999999999999999999999999998889999999999999


Q ss_pred             HhhhhcCCCchhHHHHHHHhhhhcccCCC--hHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471        209 MALGVYGFGCEDALTHLLNYVWPNIFETS--PHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF  269 (318)
Q Consensus       209 la~~~~~~~~~~~i~hll~~l~~~i~d~~--~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~  269 (318)
                      ++..++ ......+..+++.++..+.+++  +++|..++.+++.++...|.++  +.+.++|.++
T Consensus       666 l~~~~~-~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~  729 (861)
T 2bpt_A          666 ISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV  729 (861)
T ss_dssp             HHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred             HHHHhc-hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            988774 2334566677777777776654  8899999999999999999865  4666777664

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.80  E-value=4.4e-18  Score=176.61  Aligned_cols=293  Identities=14%  Similarity=0.143  Sum_probs=224.5

Q ss_pred             hhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          5 KNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      |.++..++|+++...+. ...+|++++++.++..++|.++.||.+|+++|+.+++..++.+ .+.+.+++..|++.+++.
T Consensus       417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L~~~l~~~  495 (852)
T 4fdd_A          417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKY  495 (852)
T ss_dssp             HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhh-HhHHHHHHHHHHHHHHHh
Confidence            66788999999997664 6889999999999999999999999999999999999877655 456677777888888886


Q ss_pred             hHHHHHHHHHHHHHHHhhhCHH--------HHHHHHH---HhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHH
Q psy10471         84 KKAIRRATVNTFGYIAKAIGPH--------DVLATLL---NNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPAL  146 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~igp~--------~~l~~Ll---~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L  146 (318)
                      +......++.+++.+++.+|+.        .+++.++   +.+++.+...| .+..+++.++...+    ||  .++|.+
T Consensus       496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~  574 (852)
T 4fdd_A          496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRC  574 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            6666677889999998887752        3455555   34455555554 56777776654433    44  455655


Q ss_pred             HHHhcC-----------------CcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy10471        147 MNEYRV-----------------PELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIK  207 (318)
Q Consensus       147 ~~~~~d-----------------~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~  207 (318)
                      ++.+++                 ++.+++..++.+++.+++.+|..+.+|+  +.++|.+.+.+.+.++.+|+.+..+++
T Consensus       575 ~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~  654 (852)
T 4fdd_A          575 VNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLG  654 (852)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            554432                 2456788899999999999999999998  789999999999999999999999999


Q ss_pred             HHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh------HHHhHHHHhccc--cccchHHH
Q psy10471        208 HMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR------ILQYVLQGLFHP--ARKVRDVY  279 (318)
Q Consensus       208 ~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~------~~~~vl~~l~~~--a~~~r~~~  279 (318)
                      .++..+. ......+..++|.+...+.++++++|..++.+++.++..+|.+.      +.+.+++.+-++  .+.+++.-
T Consensus       655 ~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a  733 (852)
T 4fdd_A          655 DLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT  733 (852)
T ss_dssp             HHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHH
Confidence            9998774 34567788889988888877889999999999999999998742      444444444333  34577777


Q ss_pred             HHHHHHhhccccccccccCCC
Q psy10471        280 WKIYNSLYIGGQDALISAYPR  300 (318)
Q Consensus       280 w~i~~~~~~~~~~~~~p~~p~  300 (318)
                      +.....+...+.+.+.||+|.
T Consensus       734 ~~~igrl~~~~~~~~~~~l~~  754 (852)
T 4fdd_A          734 AITIGRLGYVCPQEVAPMLQQ  754 (852)
T ss_dssp             HHHHHHHHHHCHHHHGGGHHH
T ss_pred             HHHHHHHHHhCHHHhCccHHH
Confidence            776666655555566676444

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.80  E-value=1.7e-18  Score=178.62  Aligned_cols=296  Identities=12%  Similarity=0.061  Sum_probs=221.4

Q ss_pred             hhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHHHhh
Q psy10471          4 DKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYV-SAREWMRICFELLELLK   81 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i-~~~~~~~il~~Ll~~L~   81 (318)
                      .|++++.++|.++...+ ..+.||+++++|.+.+.++|+++.||.+|++++|++++..++.+ ..+.+.+++..+++.++
T Consensus       382 ~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~  461 (876)
T 1qgr_A          382 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS  461 (876)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHc
Confidence            58899999999987444 34678999999999999999999999999999999999877644 24566777788888888


Q ss_pred             hchHHHHHHHHHHHHHHHhhh------------------CHH--HHHHHHHHhhccc---chhhHHHHHHHHHHHHhhcC
Q psy10471         82 AHKKAIRRATVNTFGYIAKAI------------------GPH--DVLATLLNNLKVQ---ERQNRVCTTVAIAIVAETCS  138 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~i------------------gp~--~~l~~Ll~~Lk~~---~~~~R~~~~~ai~~i~~~~~  138 (318)
                      ++ +.+|..++++++.+++..                  .|+  .+++.|++.++..   ++..|..+..+++.+...++
T Consensus       462 ~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~  540 (876)
T 1qgr_A          462 AE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA  540 (876)
T ss_dssp             SC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred             CC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence            86 779999999999988764                  354  6788888888754   34688888999988876655


Q ss_pred             c----c--cchHHHHHHhcC-----------Cc----chHHHHHHHHHHHHHHHHc-cccccchhhhHHHHHHHHhcCC-
Q psy10471        139 P----F--TVLPALMNEYRV-----------PE----LNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALMDRD-  195 (318)
Q Consensus       139 p----~--~vip~L~~~~~d-----------~~----~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~~~l~~~~-  195 (318)
                      .    +  .++|.++..+.+           .+    .+++..+++++..+++.+| ..+.+|++.++|.+.+.+++.. 
T Consensus       541 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  620 (876)
T 1qgr_A          541 KDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAG  620 (876)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccC
Confidence            3    2  677777766542           22    3467889999999999999 8899999999999999998764 


Q ss_pred             -HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC-ChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh---
Q psy10471        196 -LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL---  268 (318)
Q Consensus       196 -~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~-~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l---  268 (318)
                       ..+|..++.+++.++...+ ..+...+..+++.+...+.+. ++++|..++.+++.++.++|.+.  +.+.+++.+   
T Consensus       621 ~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~  699 (876)
T 1qgr_A          621 SGGVQEDALMAVSTLVEVLG-GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN  699 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence             3789999999999988763 345566677777777777776 88999999999999999999642  233344444   


Q ss_pred             -cc--ccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471        269 -FH--PARKVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       269 -~~--~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                       -.  .++.+|...-..+..+....++.|.||+|.+
T Consensus       700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~  735 (876)
T 1qgr_A          700 LGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVV  735 (876)
T ss_dssp             HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHH
T ss_pred             hCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHH
Confidence             22  2345666544444333332235688887654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.73  E-value=2.5e-16  Score=169.41  Aligned_cols=298  Identities=14%  Similarity=0.104  Sum_probs=222.2

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      ..|..++.+++.++...|..+.||+++++|.++..++|+++.||++++.+++.+++..++.+ .+.+..++..+++.++.
T Consensus       229 ~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~~l~~  307 (1230)
T 1u6g_C          229 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTY  307 (1230)
T ss_dssp             CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCC
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHHHhCC
Confidence            35778999999999999999999999999999999999999999999999999999877655 33444455545544431


Q ss_pred             -------------------------------------chHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhcccc
Q psy10471         83 -------------------------------------HKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQE  119 (318)
Q Consensus        83 -------------------------------------~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~~  119 (318)
                                                           ....+|++|..+++.++...+.    +  .+++.++..+++.+
T Consensus       308 d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~  387 (1230)
T 1u6g_C          308 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE  387 (1230)
T ss_dssp             C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred             CCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCc
Confidence                                                 1124799999999999985543    2  34666777777777


Q ss_pred             hhhHHHHHHHHHHHHhhcC-----------------------cc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        120 RQNRVCTTVAIAIVAETCS-----------------------PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       120 ~~~R~~~~~ai~~i~~~~~-----------------------p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                      ..+|..++.+++.+....+                       ++  .++|.+.+.+++++..++.+++.++..+.+..+.
T Consensus       388 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~  467 (1230)
T 1u6g_C          388 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG  467 (1230)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchh
Confidence            7899999888875543321                       11  4667777779999999999999999999998777


Q ss_pred             ccccchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        175 MGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      .+.+|++.++|.+.+.+++..  ..+|..++..++.+........+...+..+++.++..+.|.+..++..++.++..++
T Consensus       468 ~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~  547 (1230)
T 1u6g_C          468 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV  547 (1230)
T ss_dssp             TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            778999999999999999876  488888888887776544222233456667777777788888999999999999999


Q ss_pred             HHcCh-------h--hHHHhHHHHh------ccccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471        253 VALGP-------V--RILQYVLQGL------FHPARKVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       253 ~alG~-------~--~~~~~vl~~l------~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      .++|+       +  .+.+.++|.+      .+....+|+.--+.+..+-...++.+.+++|.+
T Consensus       548 ~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~  611 (1230)
T 1u6g_C          548 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT  611 (1230)
T ss_dssp             HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH
T ss_pred             HHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence            99987       1  2344445544      223345776555555555445556677776654

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.72  E-value=3.4e-16  Score=161.44  Aligned_cols=292  Identities=14%  Similarity=0.096  Sum_probs=212.6

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHHHhhh
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      -|..+..+++.++...|..   .++.++|.+.+.++|+++.+|.+|+.++|.++++.+ +.+ .+.+..++..+++.++|
T Consensus       344 ~r~~a~~~l~~l~~~~~~~---~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~-~~~~~~~l~~l~~~l~d  419 (876)
T 1qgr_A          344 PCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL-KPLVIQAMPTLIELMKD  419 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH-HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCcHh---hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHhCC
Confidence            4778999999999988753   477899999999999999999999999999998766 222 23444566667788899


Q ss_pred             chHHHHHHHHHHHHHHHhhhCH------H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhh------------------
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGP------H--DVLATLLNNLKVQERQNRVCTTVAIAIVAET------------------  136 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp------~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~------------------  136 (318)
                      +++.||..|++++|.+++.+++      +  .+++.+++.+++. ..+|..++.+++.+++.                  
T Consensus       420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~  498 (876)
T 1qgr_A          420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYC  498 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchh
Confidence            9999999999999999987654      2  5778888888764 55777788888876654                  


Q ss_pred             cCcc--cchHHHHHHhcCC---cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc-----------CC----H
Q psy10471        137 CSPF--TVLPALMNEYRVP---ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD-----------RD----L  196 (318)
Q Consensus       137 ~~p~--~vip~L~~~~~d~---~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~-----------~~----~  196 (318)
                      ..||  .++|.|++.+++.   +.+++..+++++..+.+..|..+.+|+..++|.+...+..           .|    +
T Consensus       499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~  578 (876)
T 1qgr_A          499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN  578 (876)
T ss_dssp             STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHH
Confidence            3355  7999999998775   3578888999999999999988899999999999988864           12    4


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCC--hHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh----
Q psy10471        197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETS--PHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL----  268 (318)
Q Consensus       197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~--~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l----  268 (318)
                      .+|..+..+++.++..++..+....+..+++.++..+.+..  +.++..++.+++.++...|.++  +.+.++|.+    
T Consensus       579 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l  658 (876)
T 1qgr_A          579 DLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGL  658 (876)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            56778888888887665211223345556666666655543  4789999999999999998753  334444444    


Q ss_pred             ccc-cccchHHHHHHHHHhhccccccccccCCC
Q psy10471        269 FHP-ARKVRDVYWKIYNSLYIGGQDALISAYPR  300 (318)
Q Consensus       269 ~~~-a~~~r~~~w~i~~~~~~~~~~~~~p~~p~  300 (318)
                      -+. ...+|......+..+....++.+.||++.
T Consensus       659 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  691 (876)
T 1qgr_A          659 KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE  691 (876)
T ss_dssp             HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            333 45677755554444432223456666443

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.72  E-value=2.5e-15  Score=161.59  Aligned_cols=294  Identities=9%  Similarity=0.075  Sum_probs=225.5

Q ss_pred             hhhHHHHHHHHHHHhcc-------------------CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC
Q psy10471          5 KNLGIKIVQQIAILMGC-------------------AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS   65 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~-------------------~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~   65 (318)
                      |..++.+++.+....|.                   .+.++++.+++.+.+.++|+++.+|.+++.++|.+++..+..+ 
T Consensus       391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l-  469 (1230)
T 1u6g_C          391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL-  469 (1230)
T ss_dssp             HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT-
T ss_pred             HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhh-
Confidence            44677777777766542                   2456788888888888999999999999999999999877665 


Q ss_pred             hhhHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhh
Q psy10471         66 AREWMRICFELLELLKAHK--KAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAET  136 (318)
Q Consensus        66 ~~~~~~il~~Ll~~L~d~~--~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~  136 (318)
                      .+.+.+++..+++.|+|++  ..+|.+++..++.+.+..||.       .+++.+++.+++...++|..+..+++.+++.
T Consensus       470 ~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~  549 (1230)
T 1u6g_C          470 TQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKV  549 (1230)
T ss_dssp             GGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHH
Confidence            3567778888889999965  489999999999998877764       3567777777766556777777777766655


Q ss_pred             cC-----------cc--cchHHHHHHh--cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHH
Q psy10471        137 CS-----------PF--TVLPALMNEY--RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQT  201 (318)
Q Consensus       137 ~~-----------p~--~vip~L~~~~--~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~  201 (318)
                      ++           ||  .++|.+++.+  .|++.+++..++.+++.+++..|..+.+|++.++|.+...+.+.  ..|..
T Consensus       550 ~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e--~~r~~  627 (1230)
T 1u6g_C          550 IRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLT  627 (1230)
T ss_dssp             HCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHH
T ss_pred             hcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccc--hhHHH
Confidence            43           33  7899999999  77788999999999999999999999999999999999988755  36888


Q ss_pred             HHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhc-------ccccc
Q psy10471        202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLF-------HPARK  274 (318)
Q Consensus       202 a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~-------~~a~~  274 (318)
                      +..+++.++......+.+..+.++++.+...+.+++..+|.+++.+++.++...|.....+++.+.+.       +.+..
T Consensus       628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~  707 (1230)
T 1u6g_C          628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH  707 (1230)
T ss_dssp             HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH
T ss_pred             HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHH
Confidence            88899888775544455677888888888888889999999999999999999986443344444441       22333


Q ss_pred             chHHHHHHHHHhhccccccccccCCCC
Q psy10471        275 VRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       275 ~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      +...-|..+..++......+.++++.+
T Consensus       708 ~~~~~~~~L~~l~~~~~~~~~~~~~~~  734 (1230)
T 1u6g_C          708 VSQMAISFLTTLAKVYPSSLSKISGSI  734 (1230)
T ss_dssp             HHHHHHHHHHHHTTSCGGGGGGTTTTT
T ss_pred             HHHHHHHHHHHHHHhCchhHHHhHHhH
Confidence            555667777777655555554444433

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.69  E-value=4.1e-15  Score=142.05  Aligned_cols=264  Identities=13%  Similarity=0.068  Sum_probs=199.2

Q ss_pred             hhhhHHHHHHHHHHHh-ccCcCCChHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILM-GCAILPHLKNLVEIIEHGLVDE--QQKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLEL   79 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~-g~~~~P~l~~l~~~l~~~l~d~--~~~vR~aa~~~LG~la~~~~~~i~~~~~~~-il~~Ll~~   79 (318)
                      -|+.++.+++.++... +..+.++.+.+++.+...++|+  ++.||.+|+++++.+.+...+......+.+ ++..+.+.
T Consensus       146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~  225 (462)
T 1ibr_B          146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA  225 (462)
T ss_dssp             HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence            4789999999999866 5668999999999999999998  799999999999997653221111111111 23334455


Q ss_pred             hhhchHHHHHHHHHHHHHHHhhhC----HH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhh----------------
Q psy10471         80 LKAHKKAIRRATVNTFGYIAKAIG----PH---DVLATLLNNLKVQERQNRVCTTVAIAIVAET----------------  136 (318)
Q Consensus        80 L~d~~~~vR~~av~~lg~la~~ig----p~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~----------------  136 (318)
                      ++++...+|..++++|+.+++..+    |+   .+++.++..+++.+..+|..+...+..+++.                
T Consensus       226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  305 (462)
T 1ibr_B          226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR  305 (462)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            677778899999999999987543    22   5677777777776667888877777665532                


Q ss_pred             -----cC----c--ccchHHHHHHhcCC-------cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHH
Q psy10471        137 -----CS----P--FTVLPALMNEYRVP-------ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVH  198 (318)
Q Consensus       137 -----~~----p--~~vip~L~~~~~d~-------~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~  198 (318)
                           +.    +  ..++|.+++.+.+.       +.+++.++..++..+++.+|   ...++.++|.+...+.+.+..+
T Consensus       306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~---~~~~~~~~~~l~~~l~~~~~~~  382 (462)
T 1ibr_B          306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRY  382 (462)
T ss_dssp             CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT---TTHHHHHHHHHHHHTTCSSHHH
T ss_pred             CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCChHH
Confidence                 11    1  25788888877542       34688999999999999988   3677889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh----hHHHhHHHHhcc
Q psy10471        199 RQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV----RILQYVLQGLFH  270 (318)
Q Consensus       199 R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~----~~~~~vl~~l~~  270 (318)
                      |..++.+++.++.++........+..+++.+.+.+.|+++.||..++.+++.++..+|++    .+.+.++++++.
T Consensus       383 r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~  458 (462)
T 1ibr_B          383 RDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE  458 (462)
T ss_dssp             HHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence            999999999998865322223444567777788888999999999999999999999874    356667776653

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.65  E-value=2.7e-14  Score=136.38  Aligned_cols=270  Identities=13%  Similarity=0.170  Sum_probs=201.3

Q ss_pred             hhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHHHhhh
Q psy10471          6 NLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDE--QQKVQENCIDLVGRIADRG-PEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         6 ~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~--~~~vR~aa~~~LG~la~~~-~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      +.+..+|+.+|...+..  ...++++|.+...++++  ++.+|..|+.+|+.+++.. ++.. ......++..+++.+++
T Consensus       107 ~~~~~~i~~ia~~~~~~--~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~l~~  183 (462)
T 1ibr_B          107 SSASQCVAGIACAEIPV--NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL-QDKSNEILTAIIQGMRK  183 (462)
T ss_dssp             CSHHHHHHHHHHHHGGG--TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT-GGGHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHhccc--cccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh-HhHHHHHHHHHHHHhCC
Confidence            34667788888865431  24578999999999998  8999999999999999865 3332 34445566667788888


Q ss_pred             c--hHHHHHHHHHHHHHHHhhhCH----H----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----c---cchHH
Q psy10471         83 H--KKAIRRATVNTFGYIAKAIGP----H----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----F---TVLPA  145 (318)
Q Consensus        83 ~--~~~vR~~av~~lg~la~~igp----~----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~---~vip~  145 (318)
                      +  +..||.+|+++++.+...+.+    .    .+++.+...+.+.+...|..+..++..+++.++.    +   .++|.
T Consensus       184 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~  263 (462)
T 1ibr_B          184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI  263 (462)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6  688999999999986543331    1    1345555555555668899999999888766542    2   67888


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHH---------------------ccccccchhhhHHHHHHHHhcC-------CHH
Q psy10471        146 LMNEYRVPELNVQNGVLKALSFLFEYI---------------------GEMGKDYIYAVTPLLEDALMDR-------DLV  197 (318)
Q Consensus       146 L~~~~~d~~~~v~~~vl~al~~i~~~l---------------------g~~~~~yl~~iiP~l~~~l~~~-------~~~  197 (318)
                      ++..+++.+.+++..+++.+..+++..                     ...+++|++.++|.+.+.+.+.       +..
T Consensus       264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~  343 (462)
T 1ibr_B          264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN  343 (462)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence            888888999999998999888887753                     1123456788999998888543       358


Q ss_pred             HHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh-------hhHHHhHHHHhcc
Q psy10471        198 HRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFH  270 (318)
Q Consensus       198 ~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-------~~~~~~vl~~l~~  270 (318)
                      +|..++.+++.++...   | +..+..+++++...+.+++..+|..++.+++.++...++       +.+.|.+++.+-+
T Consensus       344 ~r~~a~~~L~~l~~~~---~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d  419 (462)
T 1ibr_B          344 PCKAAGVCLMLLATCC---E-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD  419 (462)
T ss_dssp             HHHHHHHHHHHHHHHT---T-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHhc---c-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999998887   3 467778888888888889999999999999999975542       2366777777777


Q ss_pred             ccccchHH-HHHH
Q psy10471        271 PARKVRDV-YWKI  282 (318)
Q Consensus       271 ~a~~~r~~-~w~i  282 (318)
                      +..+||.. .|.+
T Consensus       420 ~~~~Vr~~a~~~l  432 (462)
T 1ibr_B          420 PSVVVRDTAAWTV  432 (462)
T ss_dssp             SCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            77778873 4433

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.3e-14  Score=130.11  Aligned_cols=206  Identities=9%  Similarity=0.067  Sum_probs=166.7

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHH-HHhhCCCCCC-hhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhC-HHHHH
Q psy10471         33 IIEHGLVDEQQKVQENCIDLVGR-IADRGPEYVS-AREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIG-PHDVL  108 (318)
Q Consensus        33 ~l~~~l~d~~~~vR~aa~~~LG~-la~~~~~~i~-~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~ig-p~~~l  108 (318)
                      -+.+.+++.+|.-|.+|+..|+. ++++++.... ..++..++..|.+.+ +|.+..+|..|++++|++++.++ |. + 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~-f-   97 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG-F-   97 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT-S-
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc-c-
Confidence            46677889999999999999999 9987665442 235566777777888 78899999999999999998887 42 0 


Q ss_pred             HHHHHhhccc-chhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc-cchhhhHHH
Q psy10471        109 ATLLNNLKVQ-ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK-DYIYAVTPL  186 (318)
Q Consensus       109 ~~Ll~~Lk~~-~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~-~yl~~iiP~  186 (318)
                               + .+..                  .++|+++..++|...++++++..++..++++++.... +|++.+++.
T Consensus        98 ---------~~~y~~------------------~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~  150 (249)
T 2qk1_A           98 ---------SKDYVS------------------LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKD  150 (249)
T ss_dssp             ---------CHHHHH------------------HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHH
T ss_pred             ---------cHHHHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHH
Confidence                     0 0000                  5678888999998899999999999999998865332 459999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhcCC--CchhHH-HHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHh
Q psy10471        187 LEDALMDRDLVHRQTACATIKHMALGVYGF--GCEDAL-THLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQY  263 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~--~~~~~i-~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~  263 (318)
                      +...+.+.++.+|+.++..++.++...+..  .+...+ ..+.+.+...+.|++++||...+++++.++.++|.+.+.||
T Consensus       151 l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~  230 (249)
T 2qk1_A          151 ILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKT  230 (249)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHH
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            999999999999999999999998876421  122455 66777778888899999999999999999999999999998


Q ss_pred             HHHH
Q psy10471        264 VLQG  267 (318)
Q Consensus       264 vl~~  267 (318)
                      +-..
T Consensus       231 l~~L  234 (249)
T 2qk1_A          231 LEHL  234 (249)
T ss_dssp             HHHS
T ss_pred             HHHH
Confidence            8764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=2.1e-14  Score=127.30  Aligned_cols=182  Identities=11%  Similarity=0.141  Sum_probs=155.8

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhCH----H-
Q psy10471         32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIGP----H-  105 (318)
Q Consensus        32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp----~-  105 (318)
                      +.+...+.|.++.+|++|+..|+.+++..+... ...+..++..|...+ +|++..||..|+.++|.+++.+|+    + 
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            346677889999999999999999999855433 233455666677788 488999999999999999998885    3 


Q ss_pred             -HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--ccccchhh
Q psy10471        106 -DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYA  182 (318)
Q Consensus       106 -~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~  182 (318)
                       .+++.++..+++++..+|.....++..++..+....++|.+...+++.++.++..++..+..++...+.  .+.+|++.
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~  176 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKL  176 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence             578899999998877899999999998887776568999999999999999999999999998887663  36789999


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        183 VTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      ++|.+..++.|.+..+|..+..+++.++..++
T Consensus       177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999998884

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.61  E-value=4.8e-14  Score=125.01  Aligned_cols=187  Identities=14%  Similarity=0.129  Sum_probs=158.0

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      .+|+.|+..|..+....+....+...++++.+...+ +|.++.||.+|+.++|++|...++.+ .+.+..++..+++.++
T Consensus        30 ~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~  108 (242)
T 2qk2_A           30 TLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFK  108 (242)
T ss_dssp             HHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHc
Confidence            468899999999988533345567789999999999 59999999999999999998777654 4666778888999999


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------c--cchHHHHHHhcCC
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------F--TVLPALMNEYRVP  153 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~--~vip~L~~~~~d~  153 (318)
                      |++..||.+|..++..+++.++...+++.++..|++.+.+.|..+...++.+...++|      +  .++|.+...+.|+
T Consensus       109 d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~  188 (242)
T 2qk2_A          109 EKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEP  188 (242)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999888888999999999977778999999999887655543      1  7999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHccc-cccchhhhHHHHHHH
Q psy10471        154 ELNVQNGVLKALSFLFEYIGEM-GKDYIYAVTPLLEDA  190 (318)
Q Consensus       154 ~~~v~~~vl~al~~i~~~lg~~-~~~yl~~iiP~l~~~  190 (318)
                      ..++|..+.+++..+.+.+|.. +.+|++.+-|.-.+.
T Consensus       189 ~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~  226 (242)
T 2qk2_A          189 DPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAK  226 (242)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHH
Confidence            9999999999999999999985 778887664444333

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.53  E-value=5.1e-13  Score=127.37  Aligned_cols=282  Identities=10%  Similarity=0.035  Sum_probs=193.8

Q ss_pred             hhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      |..++.+++.++.... ..+..+  ..+++.++..+++ .++.+|+.|+++|+.++....+.........++..|++.++
T Consensus       124 r~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~  202 (450)
T 2jdq_A          124 QEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLF  202 (450)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTT
T ss_pred             HHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            5677888888876211 111111  2467888888885 78999999999999999765332222222344555667778


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALM  147 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~  147 (318)
                      +++..+|..++++++.++....+       ..+++.|++.|++++...|..++.+++.++....       ...++|.++
T Consensus       203 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~  282 (450)
T 2jdq_A          203 VSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL  282 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHH
Confidence            88889999999999999863222       1367888999987777888888899887764321       136899999


Q ss_pred             HHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH-HH
Q psy10471        148 NEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-HL  225 (318)
Q Consensus       148 ~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~-hl  225 (318)
                      +.+++++..++..++.++..+...-.......+ ..++|.+.+.+.+.++.+|..++.+++.++...........+. .+
T Consensus       283 ~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~  362 (450)
T 2jdq_A          283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC  362 (450)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCC
Confidence            999999999999999999988752111222233 3689999999999999999999999999976521000011111 24


Q ss_pred             HHhhhhcccCCChHHHHHHHHHHHHHHHHcChh---------hH---------HHhHHHHhccccccchHHHHHHHHHhh
Q psy10471        226 LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV---------RI---------LQYVLQGLFHPARKVRDVYWKIYNSLY  287 (318)
Q Consensus       226 l~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~---------~~---------~~~vl~~l~~~a~~~r~~~w~i~~~~~  287 (318)
                      ++.+...+.+.++++|..++.+++.++..-...         .+         .+.+....-|++..+++.--.++++++
T Consensus       363 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence            555566666788999999999999998754321         11         233444335566666666666666665

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.51  E-value=8.8e-13  Score=118.13  Aligned_cols=179  Identities=16%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             chhhhHHHHHHH-HHHHhcc-Cc---CCChHhHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCC-CCCChhhHHHHHHH
Q psy10471          3 SDKNLGIKIVQQ-IAILMGC-AI---LPHLKNLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGP-EYVSAREWMRICFE   75 (318)
Q Consensus         3 ~~r~~~l~~i~~-La~~~g~-~~---~P~l~~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~-~~i~~~~~~~il~~   75 (318)
                      .+|+.++..|.. +..  |+ .+   .....+++..+.+.+ +|.|+.||.+|+++||++|++.+ +.+..+....++..
T Consensus        31 ~eRk~al~~L~~~~~~--~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~  108 (249)
T 2qk1_A           31 KDRVEALEEFWDSVLS--QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTP  108 (249)
T ss_dssp             HHHHHHHHHHHHHTGG--GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh--cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence            367788877777 665  54 33   345568899999999 89999999999999999999877 65522566667778


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHhhh------C-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----------
Q psy10471         76 LLELLKAHKKAIRRATVNTFGYIAKAI------G-PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----------  138 (318)
Q Consensus        76 Ll~~L~d~~~~vR~~av~~lg~la~~i------g-p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----------  138 (318)
                      +++.++|.++.||.++..++-.+.+.+      + +..+++.|+..|+....+.|..+...|+..++...          
T Consensus       109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l  188 (249)
T 2qk1_A          109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL  188 (249)
T ss_dssp             HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence            899999988999999999998888888      4 45789999999987767899999999987776554          


Q ss_pred             cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc-cccchhhh
Q psy10471        139 PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYIYAV  183 (318)
Q Consensus       139 p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~-~~~yl~~i  183 (318)
                      +-.++|.+.+.+.|.+.++|.++.+++..+.+.+|.+ +.+|++.+
T Consensus       189 ~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          189 KDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL  234 (249)
T ss_dssp             TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            2379999999999999999999999999999999974 66666543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.51  E-value=2.1e-13  Score=129.98  Aligned_cols=280  Identities=15%  Similarity=0.074  Sum_probs=192.0

Q ss_pred             hhhHHHHHHHHHHHhccCcCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHHHhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLK   81 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~~L~   81 (318)
                      |..+..+++.++.-........+ ...+|.+...++++++.+|+.|+++||.++....+.-  ...  ..++..|++.++
T Consensus        82 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~L~~~l~  159 (450)
T 2jdq_A           82 QFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR--DYVLDCNILPPLLQLFS  159 (450)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH--HHHHHCCCHHHHHHHhc
Confidence            55677777777651101111111 3589999999999999999999999999998543211  111  124455667788


Q ss_pred             h-chHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHH
Q psy10471         82 A-HKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPAL  146 (318)
Q Consensus        82 d-~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L  146 (318)
                      + .+..+|+.|+++++.++..-+|       ..+++.|++.+++++...|..++.+++.++....       ...++|.+
T Consensus       160 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  239 (450)
T 2jdq_A          160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL  239 (450)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHH
Confidence            6 6788999999999999965433       2578889999987777888888888887764321       13689999


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH-HH
Q psy10471        147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL-TH  224 (318)
Q Consensus       147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i-~h  224 (318)
                      ++.+++++.+++..++.++..++..-+......+ ..++|.+..++.+.+..+|..++.+++.++..... .....+ ..
T Consensus       240 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~-~~~~~~~~~  318 (450)
T 2jdq_A          240 VELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRA-QIQTVIDAN  318 (450)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTT
T ss_pred             HHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCC
Confidence            9999999999999999999988764222222222 35889999999999999999999999998763210 001111 13


Q ss_pred             HHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh--------HHHhHHHHhccccccchH-HHHHHHHHhh
Q psy10471        225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR--------ILQYVLQGLFHPARKVRD-VYWKIYNSLY  287 (318)
Q Consensus       225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~--------~~~~vl~~l~~~a~~~r~-~~w~i~~~~~  287 (318)
                      +++.++..+.+.++++|..++.+++.++....++.        ..|.++..+-+...+++. +.|.+.+-+.
T Consensus       319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR  390 (450)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            45555566667889999999999999987654432        333444444344445544 5555554443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.50  E-value=5.6e-12  Score=113.54  Aligned_cols=164  Identities=14%  Similarity=0.090  Sum_probs=82.4

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC--HHH
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG--PHD  106 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig--p~~  106 (318)
                      ..++.+...++|+++.||..|+.+||++......   ...+.+++..  ..++|++..+|..+++++|.++...+  ...
T Consensus        54 ~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~---~~~l~~~L~~--~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~  128 (280)
T 1oyz_A           54 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC---EDNVFNILNN--MALNDKSACVRATAIESTAQRCKKNPIYSPK  128 (280)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---chHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHhccCCcccHH
Confidence            4555555566666666666666666655421110   1111112110  12344555566666666666553221  123


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471        107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL  186 (318)
Q Consensus       107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~  186 (318)
                      +++.|...|++++..+|..++.+++.++.    -.++|.|...++|++..++..++.++..+    |.    .-+..+|.
T Consensus       129 ~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~----~~~~~~~~  196 (280)
T 1oyz_A          129 IVEQSQITAFDKSTNVRRATAFAISVIND----KATIPLLINLLKDPNGDVRNWAAFAININ----KY----DNSDIRDC  196 (280)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHH----TC----CCHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHhh----cc----CcHHHHHH
Confidence            45555555555555566666655554332    13556666666666666666555555443    11    11345555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHH
Q psy10471        187 LEDALMDRDLVHRQTACATIKHM  209 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~l  209 (318)
                      +...+.+.++.+|..++.+++.+
T Consensus       197 L~~~l~d~~~~vR~~A~~aL~~~  219 (280)
T 1oyz_A          197 FVEMLQDKNEEVRIEAIIGLSYR  219 (280)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHh
Confidence            56666666666666666665544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.49  E-value=3.1e-12  Score=115.20  Aligned_cols=220  Identities=15%  Similarity=0.028  Sum_probs=160.4

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-HHHH
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-DVLA  109 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-~~l~  109 (318)
                      ++.++..|+|+++.+|..|+++||++.+       .    ..+..|++.++|+++.+|..|++++|.++..-... .+++
T Consensus        25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~   93 (280)
T 1oyz_A           25 DDELFRLLDDHNSLKRISSARVLQLRGG-------Q----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFN   93 (280)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC-------H----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCC-------c----hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHH
Confidence            4667778899999999999999999863       1    23444567779988999999999999987422211 2333


Q ss_pred             HHHH-hhcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471        110 TLLN-NLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL  186 (318)
Q Consensus       110 ~Ll~-~Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~  186 (318)
                      .|.+ .+++++..+|..++.+++.++....+  ..++|.|...++|++..++..++.++..+..          +..+|.
T Consensus        94 ~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~  163 (280)
T 1oyz_A           94 ILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPL  163 (280)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHH
Confidence            4432 34566668999999999988754332  2688999999999999999988888875432          347788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471        187 LEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ  266 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~  266 (318)
                      +..++.+.++.+|..++.+++.+..     +..+.    .+.+...+.|+++.+|..++.+++.+    |.+...|.++.
T Consensus       164 L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~~----~~~~~~~~L~~  230 (280)
T 1oyz_A          164 LINLLKDPNGDVRNWAAFAININKY-----DNSDI----RDCFVEMLQDKNEEVRIEAIIGLSYR----KDKRVLSVLCD  230 (280)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTC-----CCHHH----HHHHHHHTTCSCHHHHHHHHHHHHHT----TCGGGHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHhhcc-----CcHHH----HHHHHHHhcCCCHHHHHHHHHHHHHh----CCHhhHHHHHH
Confidence            9999999999999999999988732     12233    34445556778999999999998876    56777888888


Q ss_pred             HhccccccchHHHHHHHHHh
Q psy10471        267 GLFHPARKVRDVYWKIYNSL  286 (318)
Q Consensus       267 ~l~~~a~~~r~~~w~i~~~~  286 (318)
                      .+-++.  +|..-...+..+
T Consensus       231 ~l~d~~--vr~~a~~aL~~i  248 (280)
T 1oyz_A          231 ELKKNT--VYDDIIEAAGEL  248 (280)
T ss_dssp             HHTSSS--CCHHHHHHHHHH
T ss_pred             HhcCcc--HHHHHHHHHHhc
Confidence            776543  665444444444

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.46  E-value=6.9e-12  Score=123.20  Aligned_cols=282  Identities=13%  Similarity=0.054  Sum_probs=193.9

Q ss_pred             hhhHHHHHHHHHHHhccCcCCC--hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPH--LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~--l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      |..++.+|+.|+.... .....  -...++.++..+++.++.+|+.|+++|+.++....+.........++..|++++++
T Consensus       190 r~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~  268 (530)
T 1wa5_B          190 KEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS  268 (530)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCCc-cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcC
Confidence            5677888888875210 01111  12467888889999889999999999999998663333333334455567788888


Q ss_pred             chHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMN  148 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~  148 (318)
                      ++..+|..|+++++.++..-...       .+++.|+..|++++...|..++.+++.++....       ...++|.++.
T Consensus       269 ~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~  348 (530)
T 1wa5_B          269 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL  348 (530)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH
Confidence            88899999999999998632211       357788899987777788888888887763211       1368999999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHH--
Q psy10471        149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTH--  224 (318)
Q Consensus       149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~h--  224 (318)
                      .+++++..++..++.++..+...-......++ ..++|.+.+++.+.+..+|..++.+++.++...... .....+.+  
T Consensus       349 lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~  428 (530)
T 1wa5_B          349 LLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG  428 (530)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence            99999999999999999988753211222333 468899999999999999999999999998764210 01111112  


Q ss_pred             HHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh---------h---------HHHhHHHHhccccccchHHHHHHHHHh
Q psy10471        225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV---------R---------ILQYVLQGLFHPARKVRDVYWKIYNSL  286 (318)
Q Consensus       225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~---------~---------~~~~vl~~l~~~a~~~r~~~w~i~~~~  286 (318)
                      .++.+...+.+.+++++..++.+++.+...-...         .         ..+.+.....|++..+++.--.++.++
T Consensus       429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~  508 (530)
T 1wa5_B          429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY  508 (530)
T ss_dssp             CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            4445555566688999999999999988754321         1         233444444567765555444444444


Q ss_pred             h
Q psy10471        287 Y  287 (318)
Q Consensus       287 ~  287 (318)
                      +
T Consensus       509 ~  509 (530)
T 1wa5_B          509 F  509 (530)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.45  E-value=2.3e-12  Score=126.63  Aligned_cols=254  Identities=11%  Similarity=0.095  Sum_probs=181.3

Q ss_pred             hHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         29 NLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      .++|.++..|+++ ++.+|..|+++|+.++....+..  ..+  ...+..|+++|++++..+|..|+++++.++..-...
T Consensus       130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT--KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence            5788899999997 89999999999999998543211  111  123445667778888999999999999998632111


Q ss_pred             -------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        106 -------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       106 -------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                             .+++.|+..|++.+...|..++.+++.++....|       ..++|.|++.+++++.+++..++.++..+...
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  287 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  287 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence                   3577888888876667888888888888754422       27899999999999999999999999988753


Q ss_pred             Hccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH--HHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471        172 IGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--THLLNYVWPNIFETSPHLVQAFMDAV  248 (318)
Q Consensus       172 lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i--~hll~~l~~~i~d~~~~vr~~ii~~i  248 (318)
                      -.......+ ..++|.+..++.+.+..+|..++.+++.++....  .....+  ..+++.+...+.++++.+|..++.++
T Consensus       288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL  365 (530)
T 1wa5_B          288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND--LQTQVVINAGVLPALRLLLSSPKENIKKEACWTI  365 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH--HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            222222233 3688999999999999999999999998875421  000111  12556666667778899999999999


Q ss_pred             HHHHHHcCh--------hhHHHhHHHHhccccccchH-HHHHHHHHhh
Q psy10471        249 EGLRVALGP--------VRILQYVLQGLFHPARKVRD-VYWKIYNSLY  287 (318)
Q Consensus       249 ~~i~~alG~--------~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~~  287 (318)
                      ..++.. .+        ..+.|.++..+-++...++. +.|.+.|...
T Consensus       366 ~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          366 SNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  412 (530)
T ss_dssp             HHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence            998752 11        12455566665555555554 6666666554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.44  E-value=6.3e-12  Score=123.24  Aligned_cols=293  Identities=10%  Similarity=0.050  Sum_probs=193.1

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhc-CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGL-VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l-~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      |..++.+|+.|+... ...+..+-  ..++.++..+ ++.++.+|+.++++|+.++...+.. ......+.+..|++.++
T Consensus       177 ~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~  254 (528)
T 4b8j_A          177 REQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIH  254 (528)
T ss_dssp             HHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHC
Confidence            567788888887521 11111121  3677788888 5678999999999999999875332 23334456666778889


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALM  147 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~  147 (318)
                      +++..+|..|+++++.++......       .+++.|+..|+..+...|..++.+++.++....       ...++|.|+
T Consensus       255 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~  334 (528)
T 4b8j_A          255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLL  334 (528)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHH
Confidence            888899999999999998532221       247788999988777788888888887664211       236899999


Q ss_pred             HHhcCC-cchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHH--H
Q psy10471        148 NEYRVP-ELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDAL--T  223 (318)
Q Consensus       148 ~~~~d~-~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i--~  223 (318)
                      +.++++ +..++..++.++..++..-.......+ ..++|.+.+++.+.+..+|..++.+++.++.... ......+  .
T Consensus       335 ~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~-~~~~~~l~~~  413 (528)
T 4b8j_A          335 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGS-HDQIKYLVSE  413 (528)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC-HHHHHHHHHT
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHC
Confidence            999988 889999999999998863111122222 3688999999999999999999999999987621 0111111  1


Q ss_pred             HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh---------hH---------HHhHHHHhccccccchHHHHHHHHH
Q psy10471        224 HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV---------RI---------LQYVLQGLFHPARKVRDVYWKIYNS  285 (318)
Q Consensus       224 hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~---------~~---------~~~vl~~l~~~a~~~r~~~w~i~~~  285 (318)
                      ..++.+...+.+.+++++..++++++.+...-..+         .+         .+.+.....|++..+++.-..++..
T Consensus       414 ~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~  493 (528)
T 4b8j_A          414 GCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEA  493 (528)
T ss_dssp             TCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            23444456666788999999999999998765331         11         2334444457777555555555555


Q ss_pred             hhcc-ccccccccCCC
Q psy10471        286 LYIG-GQDALISAYPR  300 (318)
Q Consensus       286 ~~~~-~~~~~~p~~p~  300 (318)
                      ++.. ..+++.++.|+
T Consensus       494 ~~~~e~~~~~~~~~~~  509 (528)
T 4b8j_A          494 YWMDEEDDTMGATTVA  509 (528)
T ss_dssp             HCC-------------
T ss_pred             HCCCcccccccccCCC
Confidence            5432 33456666665

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.43  E-value=5.4e-12  Score=108.04  Aligned_cols=190  Identities=20%  Similarity=0.220  Sum_probs=151.5

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI  102 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i  102 (318)
                      ..+.-+...+.+++.|+|+++.+|..|+.+||++...        +   .+..|++.|++++..+|..|++++|.++.  
T Consensus         8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~--------~---~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--   74 (201)
T 3ltj_A            8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--------R---AVEPLIKALKDEDAWVRRAAADALGQIGD--   74 (201)
T ss_dssp             CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG--------G---GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh--------h---HHHHHHHHHcCCCHHHHHHHHHHHHhhCC--
Confidence            4566678889999999999999999999999987641        1   23345677789889999999999998753  


Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471        103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA  182 (318)
Q Consensus       103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~  182 (318)
                        ...++.|++.|++++..+|..++.+++.+..    ...+|.+...++|++..++..++.++..+    |.      +.
T Consensus        75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~------~~  138 (201)
T 3ltj_A           75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD------ER  138 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----TC------GG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CC------HH
Confidence              3567888889998888899999999887643    25788999999999999999999988865    22      46


Q ss_pred             hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        183 VTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       183 iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      .+|.+..++.+.++.+|..++.+++.+       |..+.+..+..    .+.|+++.+|..+..+++.+.
T Consensus       139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~-------~~~~~~~~L~~----~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          139 AVEPLIKALKDEDGWVRQSAADALGEI-------GGERVRAAMEK----LAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHH-------CSHHHHHHHHH----HHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHh-------CchhHHHHHHH----HHhCCCHHHHHHHHHHHHHHH
Confidence            778899999999999999999999887       33344444433    345588999999999988764

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=3.3e-12  Score=110.22  Aligned_cols=189  Identities=20%  Similarity=0.209  Sum_probs=144.7

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      ++.++.++..|+|+++.+|..|+.+||++.+.        +   .+..|++.+++++..+|..|++++|.++.    ...
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~--------~---~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~   82 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE--------R---AVEPLIKALKDEDAWVRRAAADALGQIGD----ERA   82 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------G---GHHHHHHHTTCSCHHHHHHHHHHHHHHCC----GGG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc--------c---HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----HHH
Confidence            56778888999999999999999999987541        2   23345577789889999999999998763    346


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471        108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL  187 (318)
Q Consensus       108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l  187 (318)
                      ++.|++.|++++..+|..++.+++.++.    ...+|.|...++|++..++..++.++..+    |.      +..+|.+
T Consensus        83 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~------~~~~~~L  148 (211)
T 3ltm_A           83 VEPLIKALKDEDGWVRQSAAVALGQIGD----ERAVEPLIKALKDEDWFVRIAAAFALGEI----GD------ERAVEPL  148 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CC------GGGHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC------HHHHHHH
Confidence            7888888988888899999998887643    25789999999999999999998888765    32      4567888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        188 EDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       188 ~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                      ..++.+.++.+|..++.+++.+.       ..+.+..+    ...+.|+++.||..+..+++.+...-+
T Consensus       149 ~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L----~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          149 IKALKDEDGWVRQSAADALGEIG-------GERVRAAM----EKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHC-------SHHHHHHH----HHHHHHCCHHHHHHHHHHHHC------
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhC-------chhHHHHH----HHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            89999999999999999998772       23333333    333446889999999999988765544

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.39  E-value=3.2e-12  Score=112.08  Aligned_cols=226  Identities=15%  Similarity=0.101  Sum_probs=164.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--  105 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--  105 (318)
                      -+|.++..|+++++.+|..|+++|+.++....+..  ..+.  ..+..|++.|++++..+|..|+++++.++..-...  
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAI--KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            46788899999999999999999999998654221  1111  25566778889988999999999999998632211  


Q ss_pred             -----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Q psy10471        106 -----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG  173 (318)
Q Consensus       106 -----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg  173 (318)
                           ..++.|++.|++++...|..++.+++.++....       ...++|.+++.+++++..++..++.++..+...-.
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence                 368889999998777888888888887763221       12689999999999999999999999998876322


Q ss_pred             cccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471        174 EMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEG  250 (318)
Q Consensus       174 ~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~  250 (318)
                      ......+ ...+|.+.+++.+.++.+|..++.+++.++..-.  +....+.  ..++.+...+.++++++|..++.++..
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT--SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH--HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            1111222 4588999999999999999999999999875321  1111111  133444555566788899999999988


Q ss_pred             HHHHcChhh
Q psy10471        251 LRVALGPVR  259 (318)
Q Consensus       251 i~~alG~~~  259 (318)
                      ++..-+...
T Consensus       239 l~~~~~~~~  247 (252)
T 4hxt_A          239 IKSGGWLEH  247 (252)
T ss_dssp             HHHTCBCCC
T ss_pred             HHcCCCccc
Confidence            877655443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.38  E-value=8.2e-12  Score=122.40  Aligned_cols=275  Identities=16%  Similarity=0.149  Sum_probs=188.2

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChH-----hHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLK-----NLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWM--RICFEL   76 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~-----~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~L   76 (318)
                      |..++.++..++.  + .-.|+..     .++|.++..|++++ +.+|..|+++|+.++....+..  ..+.  ..+..|
T Consensus        91 ~~~A~~~L~~l~s--~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~--~~~~~~g~i~~L  165 (528)
T 4b8j_A           91 QLEATTQFRKLLS--I-ERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT--KVVIDHGAVPIF  165 (528)
T ss_dssp             HHHHHHHHHHHHT--C-SSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHhc--C-CCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH--HHHHhCCcHHHH
Confidence            3455555655554  2 2234443     56888999999876 9999999999999998544311  1111  255567


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcC-c-----cc
Q psy10471         77 LELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCS-P-----FT  141 (318)
Q Consensus        77 l~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~-p-----~~  141 (318)
                      +++|++++..+|..|+++++.++.. +|.        ..++.|+..|+ ..+...|..++.+++.++.... +     ..
T Consensus       166 ~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~  244 (528)
T 4b8j_A          166 VKLLGSSSDDVREQAVWALGNVAGD-SPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRP  244 (528)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHT-CHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhCC-ChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHH
Confidence            7888998889999999999999863 332        25778888884 4455788888888888775431 1     26


Q ss_pred             chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh
Q psy10471        142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED  220 (318)
Q Consensus       142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~  220 (318)
                      ++|.|+..+++++.+++..++.++..+...-.......+ ..++|.+..++.+.+..+|..++.+++.++..... ....
T Consensus       245 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~  323 (528)
T 4b8j_A          245 ALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA-QTQC  323 (528)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-HHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH-HHHH
Confidence            899999999999999999999999988753222222222 35889999999999999999999999998763310 0001


Q ss_pred             HH-HHHHHhhhhcccCC-ChHHHHHHHHHHHHHHHHcChh---------hHHHhHHHHhccccccch-HHHHHHHHHhhc
Q psy10471        221 AL-THLLNYVWPNIFET-SPHLVQAFMDAVEGLRVALGPV---------RILQYVLQGLFHPARKVR-DVYWKIYNSLYI  288 (318)
Q Consensus       221 ~i-~hll~~l~~~i~d~-~~~vr~~ii~~i~~i~~alG~~---------~~~~~vl~~l~~~a~~~r-~~~w~i~~~~~~  288 (318)
                      .+ ...++.+...+.++ ++.++..++.++..++.  |.+         .+.|.++..+.+...+++ ++.|.+.|....
T Consensus       324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~--~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA--GNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT--SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC--CCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            11 11344445555567 89999999999999975  322         234555555544544444 467777665543

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.33  E-value=2.8e-11  Score=104.30  Aligned_cols=157  Identities=19%  Similarity=0.239  Sum_probs=126.7

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHH
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDV  107 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~  107 (318)
                      ++.++.+...++|+++.||..|+.+||.+..        ++..+   .|++.|+|+++.+|..|++++|.++.    ...
T Consensus        49 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~---~L~~~l~~~~~~vr~~a~~aL~~~~~----~~~  113 (211)
T 3ltm_A           49 ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVE---PLIKALKDEDGWVRQSAAVALGQIGD----ERA  113 (211)
T ss_dssp             GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHH---HHHHHTTCSSHHHHHHHHHHHHHHCC----GGG
T ss_pred             ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHH---HHHHHHcCCCHHHHHHHHHHHHHhCc----HHH
Confidence            4667888889999999999999999999863        12223   34567799889999999999998754    346


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471        108 LATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL  187 (318)
Q Consensus       108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l  187 (318)
                      ++.|...|++++..+|..++.+++.+..    ...+|.|...++|++..++..++.++..+    |.      +..+|.+
T Consensus       114 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~------~~~~~~L  179 (211)
T 3ltm_A          114 VEPLIKALKDEDWFVRIAAAFALGEIGD----ERAVEPLIKALKDEDGWVRQSAADALGEI----GG------ERVRAAM  179 (211)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS------HHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc------hhHHHHH
Confidence            7888888888888899999999987743    36889999999999999999999988875    22      6788999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        188 EDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       188 ~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      ..++.+.++.+|..+..+++.+....
T Consensus       180 ~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          180 EKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999997775443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.32  E-value=3.5e-11  Score=102.91  Aligned_cols=154  Identities=19%  Similarity=0.244  Sum_probs=126.5

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL  108 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l  108 (318)
                      +.++.++..++|+++.||..|+.+||.+...        +.   +..|++.|+|+++.+|..|++++|.++.    ...+
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~--------~~---~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~  109 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGDE--------RA---VEPLIKALKDEDGWVRQSAAVALGQIGD----ERAV  109 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--------GG---HHHHHHHTTCSSHHHHHHHHHHHHHHCC----GGGH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH--------HH---HHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHH
Confidence            5577788888999999999999999998531        22   2334567789999999999999998754    3467


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHH
Q psy10471        109 ATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE  188 (318)
Q Consensus       109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~  188 (318)
                      +.|...|++++..+|..++.+++.+..    ...+|.|...++|++..++..++.++..+    |.      +..+|.+.
T Consensus       110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~d~~~~vr~~A~~aL~~~----~~------~~~~~~L~  175 (201)
T 3ltj_A          110 EPLIKALKDEDWFVRIAAAFALGEIGD----ERAVEPLIKALKDEDGWVRQSAADALGEI----GG------ERVRAAME  175 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHTC----GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CS------HHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCC----HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----Cc------hhHHHHHH
Confidence            788888888888899999999987753    36889999999999999999999998876    32      56789999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHhh
Q psy10471        189 DALMDRDLVHRQTACATIKHMAL  211 (318)
Q Consensus       189 ~~l~~~~~~~R~~a~~~i~~la~  211 (318)
                      .++.+.++.+|..+..+++.+..
T Consensus       176 ~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          176 KLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999987743

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.31  E-value=5.7e-11  Score=116.65  Aligned_cols=282  Identities=16%  Similarity=0.137  Sum_probs=186.9

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCCChHhH-----HHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHH
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILPHLKNL-----VEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWM--RIC   73 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~l-----~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il   73 (318)
                      |.|...-+.+...+-.++..+-.|+++.+     +|.++.+|++ +++.+|..|+++|+.||+...+..  ..+.  ..+
T Consensus        68 s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~--~~vv~~GaI  145 (510)
T 3ul1_B           68 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT--KAVVDGGAI  145 (510)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHH
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHCCCH
Confidence            45555566666666666656678888765     7789999975 569999999999999997554321  1111  134


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch-----hhHHHHHHHHHHHHhhcCc-
Q psy10471         74 FELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER-----QNRVCTTVAIAIVAETCSP-  139 (318)
Q Consensus        74 ~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~-----~~R~~~~~ai~~i~~~~~p-  139 (318)
                      ..|+++|++++..+|+.|++++|.|+.. +|.        ..++.|+..|+..+.     .....++.++..++....+ 
T Consensus       146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~  224 (510)
T 3ul1_B          146 PAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA  224 (510)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccch
Confidence            4567888998899999999999999853 332        236678888875443     2233344445545433222 


Q ss_pred             ------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        140 ------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       140 ------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                            ..++|.|.+.+++++.+++..++.++.++...-........ ..++|.+..++.+.+..++..++.+++.++..
T Consensus       225 ~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~  304 (510)
T 3ul1_B          225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  304 (510)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence                  25889999999999999999999999988753211111111 35789999999999999999999999888543


Q ss_pred             hcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC-------hhhHHHhHHHHhccccccch-HHHHHH
Q psy10471        213 VYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG-------PVRILQYVLQGLFHPARKVR-DVYWKI  282 (318)
Q Consensus       213 ~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG-------~~~~~~~vl~~l~~~a~~~r-~~~w~i  282 (318)
                      -.  .....+.  ..++.+...+.++++++|..+..++..++..-.       .....|.++..+-+...++| ++-|.+
T Consensus       305 ~~--~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL  382 (510)
T 3ul1_B          305 TD--EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI  382 (510)
T ss_dssp             CH--HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             CH--HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            21  0001111  134455566667889999999999988864211       12255666666655555444 478888


Q ss_pred             HHHhhc
Q psy10471        283 YNSLYI  288 (318)
Q Consensus       283 ~~~~~~  288 (318)
                      .|....
T Consensus       383 ~Nl~~~  388 (510)
T 3ul1_B          383 TNYTSG  388 (510)
T ss_dssp             HHHHHH
T ss_pred             HHHHcc
Confidence            776543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.29  E-value=1.7e-10  Score=121.27  Aligned_cols=246  Identities=11%  Similarity=0.080  Sum_probs=168.6

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcC--CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLV--DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~--d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      .+|++++.+++.++........++++++++ +++.+.  |.+|.||.++++++|+++++....  ++.+.+++..+++.|
T Consensus       479 ~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l  555 (971)
T 2x1g_F          479 TKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMEN--PAYIPPAINLLVRGL  555 (971)
T ss_dssp             HHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHh
Confidence            378999999999988444467899999999 445454  569999999999999999976542  345666777777777


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhC----HH--HHHHHHHHhhccc--chhhHHHHHHHHHHHHhhc-----Ccc--cchHH
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIG----PH--DVLATLLNNLKVQ--ERQNRVCTTVAIAIVAETC-----SPF--TVLPA  145 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~ig----p~--~~l~~Ll~~Lk~~--~~~~R~~~~~ai~~i~~~~-----~p~--~vip~  145 (318)
                       +  +.|+..|..++..+++.++    ||  .++..+.+.+...  +...+..+..+++.++...     .|+  .+++.
T Consensus       556 -~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~  632 (971)
T 2x1g_F          556 -N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSP  632 (971)
T ss_dssp             -H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             -C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence             4  6789999999999887655    44  4566666666642  3467888899998876543     232  45555


Q ss_pred             HHHHhc----CC--cc---hHHHHHHHHHHHHHHHHcc-------------ccccchhhhHHHHHHHHhcC--CHHHHHH
Q psy10471        146 LMNEYR----VP--EL---NVQNGVLKALSFLFEYIGE-------------MGKDYIYAVTPLLEDALMDR--DLVHRQT  201 (318)
Q Consensus       146 L~~~~~----d~--~~---~v~~~vl~al~~i~~~lg~-------------~~~~yl~~iiP~l~~~l~~~--~~~~R~~  201 (318)
                      +++.+.    .+  +.   ......+..++.++.+++.             .+.+|...++|.+..++...  +..+.+.
T Consensus       633 l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~  712 (971)
T 2x1g_F          633 CFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEA  712 (971)
T ss_dssp             HHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            555443    22  11   1124566777777777754             35678889999999998653  6788999


Q ss_pred             HHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh
Q psy10471        202 ACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV  258 (318)
Q Consensus       202 a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~  258 (318)
                      +..+++.++...+ .+....+..+.+++...+.. .+.  ..+++.++.++..+|.+
T Consensus       713 ~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~~~-~~~--~~~l~l~~~~i~~~~~~  765 (971)
T 2x1g_F          713 ACSAMKHAITNLR-SSFQPMLQDLCLFIVASFQT-RCC--APTLEISKTAIVMFFKD  765 (971)
T ss_dssp             HHHHHHHHHHHHH-C--CTHHHHHHHHHHHHCC---CC--HHHHHHHHHHHTTCCC-
T ss_pred             HHHHHHHHHHhhh-hhccccHHHHHHHHHHHHhc-CCc--hHHHHHHHHHHHHhCCC
Confidence            9999999888773 33445677777777655433 222  45899999999999984

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.27  E-value=2.3e-10  Score=112.65  Aligned_cols=285  Identities=17%  Similarity=0.128  Sum_probs=186.8

Q ss_pred             CchhhhHHHHHHHHHHHhccCcCCChHh-----HHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q psy10471          2 SSDKNLGIKIVQQIAILMGCAILPHLKN-----LVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFE   75 (318)
Q Consensus         2 ~~~r~~~l~~i~~La~~~g~~~~P~l~~-----l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~   75 (318)
                      |.+...-+.++..+-..+...-.|+++.     ++|.++..|+ ++++.++..|+++|+.+|....+....---...+..
T Consensus        87 s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~  166 (529)
T 3tpo_A           87 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPA  166 (529)
T ss_dssp             SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHH
Confidence            3444555666666666665666788764     4678888886 456999999999999999865432110000123445


Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchh-----hHHHHHHHHHHHHhhcCc---
Q psy10471         76 LLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQ-----NRVCTTVAIAIVAETCSP---  139 (318)
Q Consensus        76 Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~-----~R~~~~~ai~~i~~~~~p---  139 (318)
                      |+.+|++++..+|..|++++|.|+. -+|.        ..++.|+..|+..+..     ....++.++..++....|   
T Consensus       167 Lv~LL~s~~~~v~e~A~~aL~nLa~-~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~  245 (529)
T 3tpo_A          167 FISLLASPHAHISEQAVWALGNIAG-AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP  245 (529)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhc-cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh
Confidence            6678899999999999999999985 3342        2366788888754431     223334444444432222   


Q ss_pred             ----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        140 ----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       140 ----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                          ..++|.|.+.+++++.+++..++.++.++...-........ ..++|.+..++.+.+..++..++.+++.++..-.
T Consensus       246 ~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~  325 (529)
T 3tpo_A          246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD  325 (529)
T ss_dssp             HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccch
Confidence                25789999999999999999999999988753221111111 3588999999999999999999999988864321


Q ss_pred             CCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC-------hhhHHHhHHHHhccccccch-HHHHHHHH
Q psy10471        215 GFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG-------PVRILQYVLQGLFHPARKVR-DVYWKIYN  284 (318)
Q Consensus       215 ~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG-------~~~~~~~vl~~l~~~a~~~r-~~~w~i~~  284 (318)
                        .....+.  ..++.+...+.++++++|..++.++..++..-.       .....|.++..+.+...+++ ++-|.++|
T Consensus       326 --~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n  403 (529)
T 3tpo_A          326 --EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN  403 (529)
T ss_dssp             --HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             --HHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence              0001111  133444555666889999999999988864211       12255666666666555444 48888887


Q ss_pred             Hhhcc
Q psy10471        285 SLYIG  289 (318)
Q Consensus       285 ~~~~~  289 (318)
                      ....+
T Consensus       404 l~~~~  408 (529)
T 3tpo_A          404 YTSGG  408 (529)
T ss_dssp             HHHHS
T ss_pred             HHcCC
Confidence            66533

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.25  E-value=2.3e-10  Score=120.36  Aligned_cols=249  Identities=8%  Similarity=0.025  Sum_probs=166.5

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcC------CCCHHHHHHHHHHHHHHHhhCC--C-CCC----hhhHH
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLV------DEQQKVQENCIDLVGRIADRGP--E-YVS----AREWM   70 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~------d~~~~vR~aa~~~LG~la~~~~--~-~i~----~~~~~   70 (318)
                      -|.+|..+++.++...|..+   ++.+++.+...++      +.+++.|++|+.++|.+|+++.  . ...    ..++.
T Consensus       377 ~R~aa~~~L~~l~~~~~~~v---~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~  453 (960)
T 1wa5_C          377 RRRACTDFLKELKEKNEVLV---TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV  453 (960)
T ss_dssp             HHHHHHHHHHHHHHHCHHHH---HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred             cHHHHHHHHHHHHHHcchhH---HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence            47789999999999877444   3344454444444      5679999999999999997532  1 110    11455


Q ss_pred             HHHH-HHHHHhhhc---hHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhh-------
Q psy10471         71 RICF-ELLELLKAH---KKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAET-------  136 (318)
Q Consensus        71 ~il~-~Ll~~L~d~---~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~-------  136 (318)
                      +.+. .++..++++   ++.+|..|++++|++++.+.|.   .+++.+++.|.+++..+|..++.|+..+.+.       
T Consensus       454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~  533 (960)
T 1wa5_C          454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSP  533 (960)
T ss_dssp             HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSC
T ss_pred             HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccc
Confidence            5443 355666776   8889999999999999988764   4577788888877778899999999877652       


Q ss_pred             --------cCcc--cchHHHHHHhcCC----c-chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc-----CCH
Q psy10471        137 --------CSPF--TVLPALMNEYRVP----E-LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD-----RDL  196 (318)
Q Consensus       137 --------~~p~--~vip~L~~~~~d~----~-~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~-----~~~  196 (318)
                              ..||  .+++.|++.++..    . ......++++++.++...+..+.+|++.++|.+.+.+..     .++
T Consensus       534 ~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~  613 (960)
T 1wa5_C          534 AFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNP  613 (960)
T ss_dssp             CBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             cccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCc
Confidence                    1244  5666666666543    1 112368999999999999999999999999999888853     356


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc
Q psy10471        197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL  255 (318)
Q Consensus       197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al  255 (318)
                      .++..+.++++.++..............+.|.+...+.....++...+.+.++.+....
T Consensus       614 ~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          614 RFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence            77767777777777662211111222233333222222233456666777777776553

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.24  E-value=3.9e-10  Score=118.67  Aligned_cols=245  Identities=11%  Similarity=0.121  Sum_probs=162.7

Q ss_pred             chhhhHHHHHHHHHHHh-ccC--cCC-----ChHhH-HHHHHhhcCCC---CHHHHHHHHHHHHHHHhhCCCCCChhhHH
Q psy10471          3 SDKNLGIKIVQQIAILM-GCA--ILP-----HLKNL-VEIIEHGLVDE---QQKVQENCIDLVGRIADRGPEYVSAREWM   70 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~-g~~--~~P-----~l~~l-~~~l~~~l~d~---~~~vR~aa~~~LG~la~~~~~~i~~~~~~   70 (318)
                      +.|++++.++|.+|.-+ |+.  +.+     .+.++ ...+.|.++|+   +|.||.+|++++|+++++.    ..+.+.
T Consensus       420 ~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~l~  495 (960)
T 1wa5_C          420 KFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQLI  495 (960)
T ss_dssp             HHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHHHH
Confidence            46899999999998732 221  222     44453 34567888887   9999999999999999974    356778


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHhh---------------hCHH--HHHHHHHHhhccc-----chhhHHHHHH
Q psy10471         71 RICFELLELLKAHKKAIRRATVNTFGYIAKA---------------IGPH--DVLATLLNNLKVQ-----ERQNRVCTTV  128 (318)
Q Consensus        71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~---------------igp~--~~l~~Ll~~Lk~~-----~~~~R~~~~~  128 (318)
                      +++..+++.|.|++..||..|..++..+.+.               +.||  .++..|+..+...     +....-.+..
T Consensus       496 ~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~  575 (960)
T 1wa5_C          496 ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMR  575 (960)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHH
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHH
Confidence            8888888999998888999999999997763               3454  5677777777642     1112234455


Q ss_pred             HHHHHH----hhcCcc--cchHHHHHHh----cCCc-chHHHHHHHHHHHHHHHHcc-ccccchhhhHHHHHHHHhcCCH
Q psy10471        129 AIAIVA----ETCSPF--TVLPALMNEY----RVPE-LNVQNGVLKALSFLFEYIGE-MGKDYIYAVTPLLEDALMDRDL  196 (318)
Q Consensus       129 ai~~i~----~~~~p~--~vip~L~~~~----~d~~-~~v~~~vl~al~~i~~~lg~-~~~~yl~~iiP~l~~~l~~~~~  196 (318)
                      +++.+.    +.+.||  .+++.+++.+    ++++ ......++++++.++.+.+. .+.+|.+.++|.+...+.....
T Consensus       576 al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~  655 (960)
T 1wa5_C          576 SIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQ  655 (960)
T ss_dssp             HHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhH
Confidence            555443    556676  6777666655    3333 34556689999988887443 5667888999999999987766


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh-hcccCCChHHHHHHHHHHHHHHHH
Q psy10471        197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVW-PNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~-~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      .+..-+.+.++.+....  .+..+.+..+.+++. +..++.. .....++..++.....
T Consensus       656 ~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~~~~~  711 (960)
T 1wa5_C          656 EFIPYVFQIIAFVVEQS--ATIPESIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKT  711 (960)
T ss_dssp             TTHHHHHHHHHHHHHHC--SSCCTTTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHcCHHHhcCC-CCchhHHHHHHHHHHh
Confidence            67777777777776654  234444555555544 1222222 2333455555554433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.23  E-value=6e-10  Score=111.32  Aligned_cols=266  Identities=11%  Similarity=0.083  Sum_probs=174.1

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |.+|..+++.+..... +..+. ..+++.+..+|.|++++||.+|+.+|++++...++.....-..+.+..|++.+++.+
T Consensus       138 Rk~A~~al~~i~~~~p-~~~~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~  215 (591)
T 2vgl_B          138 RKTAAVCVAKLHDINA-QMVED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECT  215 (591)
T ss_dssp             HHHHHHHHHHHHHSSC-CCHHH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhhCh-hhccc-ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCC
Confidence            5677778888877322 22111 368899999999999999999999999999866532001122344556677778888


Q ss_pred             HHHHHHHHHHHHHHHhhhCH---HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc--Ccc-------cchHHHHHHhcC
Q psy10471         85 KAIRRATVNTFGYIAKAIGP---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC--SPF-------TVLPALMNEYRV  152 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp---~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~--~p~-------~vip~L~~~~~d  152 (318)
                      +|.+...++.++.++.. ++   ..+++.+...|++.+..++..++.++..+....  .|.       .+.+.|.... +
T Consensus       216 ~~~q~~il~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~  293 (591)
T 2vgl_B          216 EWGQIFILDCLSNYNPK-DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S  293 (591)
T ss_dssp             HHHHHHHHHHHHTSCCC-SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-T
T ss_pred             chHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-c
Confidence            89998888888776532 22   256777877888766678888888887765432  121       3445666544 4


Q ss_pred             CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhc
Q psy10471        153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPN  232 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~  232 (318)
                      ++++++-.++.++..+.+.-...+.+++..+    . ...+.+..+|..+++++..++..   ...+..+..+.    ..
T Consensus       294 ~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~-~~~~d~~~Ir~~al~~L~~l~~~---~nv~~iv~~L~----~~  361 (591)
T 2vgl_B          294 GEPEVQYVALRNINLIVQKRPEILKQEIKVF----F-VKYNDPIYVKLEKLDIMIRLASQ---ANIAQVLAELK----EY  361 (591)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----S-CCTTSCHHHHHHHHHHHHHTCCS---STHHHHHHHHH----HH
T ss_pred             CCccHHHHHHHHHHHHHHhChHHHHHHHHhh----e-eccCChHHHHHHHHHHHHHHCCh---hhHHHHHHHHH----HH
Confidence            7889999999999999886554455554432    1 22244588888888887666422   12233444444    34


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHhccccccchHHHHHHHHHh
Q psy10471        233 IFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGLFHPARKVRDVYWKIYNSL  286 (318)
Q Consensus       233 i~d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l~~~a~~~r~~~w~i~~~~  286 (318)
                      +.+.+.++|..++.+|+.++....+  +.+.+.+++.+-+....++..-|..+..+
T Consensus       362 l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          362 ATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence            4557788999888888888877643  33666666666555555555445544443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.20  E-value=3.5e-11  Score=106.11  Aligned_cols=217  Identities=18%  Similarity=0.128  Sum_probs=157.2

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---  105 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---  105 (318)
                      .+.+...|+++++.+|..|+++|..+.....+.  ...+.  ..+..|++.|++++..+|..|+++++.++..-...   
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~--~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQ--IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHH--HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCch--HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            556777788889999999999998877642211  11111  24556778889988899999999999998632221   


Q ss_pred             ----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        106 ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       106 ----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                          ..++.|++.|++++...|..++.+++.++....       ...++|.+++.+++++..++..++.++..+...-. 
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-  170 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-  170 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence                368889999998777888888888887763321       23689999999999999999999999998875321 


Q ss_pred             ccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471        175 MGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEG  250 (318)
Q Consensus       175 ~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~  250 (318)
                      .....+  ...+|.+.+++.+.++.+|..++.+++.++..-.  +....+..  .++.+...+.+.++++|..+..++..
T Consensus       171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~  248 (252)
T 4db8_A          171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            112222  4688999999999999999999999999874321  11111111  44555666667888999988888877


Q ss_pred             HH
Q psy10471        251 LR  252 (318)
Q Consensus       251 i~  252 (318)
                      ++
T Consensus       249 l~  250 (252)
T 4db8_A          249 LQ  250 (252)
T ss_dssp             TC
T ss_pred             Hh
Confidence            64

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.20  E-value=8.6e-11  Score=100.81  Aligned_cols=180  Identities=18%  Similarity=0.169  Sum_probs=137.6

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-  105 (318)
                      ...|.+.++++++++.+|..|+++|+.++....+..  ..+.  ..+..|++.|++++..+|..|+++++.++..-... 
T Consensus        12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHH--HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            345677888899999999999999999996543321  1111  24556778889988899999999999998422211 


Q ss_pred             ------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy10471        106 ------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYI  172 (318)
Q Consensus       106 ------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l  172 (318)
                            ..++.|++.|++++...|..++.+++.++....       ...++|.|++.+++++.+++..++.++..++.. 
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence                  257889999998887888888888887763211       236899999999999999999999999998863 


Q ss_pred             ccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471        173 GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMAL  211 (318)
Q Consensus       173 g~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~  211 (318)
                      +......+  ...+|.+.+++.+.+..+|+.++.+++.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            12222333  3588999999999999999999999988764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.19  E-value=6.8e-11  Score=104.24  Aligned_cols=205  Identities=16%  Similarity=0.122  Sum_probs=149.0

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCCh-HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHh
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHL-KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELL   80 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l-~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L   80 (318)
                      .+..++.++..+...........+ ...+|.++..++++++.+|..|+++|+.++....+..  ..+.  ..+..|+++|
T Consensus        28 ~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~g~i~~L~~lL  105 (252)
T 4db8_A           28 EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI--QAVIDAGALPALVQLL  105 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH--HHHHHcCCHHHHHHHH
Confidence            355667777554442111111111 2578899999999999999999999999997543211  1111  2455677888


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHH
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPAL  146 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L  146 (318)
                      ++++..+|..|+++++.++..-...       ..++.|++.|++++...|..++.+++.++....       ...++|.|
T Consensus       106 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L  185 (252)
T 4db8_A          106 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL  185 (252)
T ss_dssp             GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred             cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHH
Confidence            9988899999999999998532211       368889999988777888888888887764221       14789999


Q ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q psy10471        147 MNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMA  210 (318)
Q Consensus       147 ~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la  210 (318)
                      ++.+++++..++..++.++..++..-.......+ ...+|.+.+++.+.++.+|+.++.+++.++
T Consensus       186 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~  250 (252)
T 4db8_A          186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  250 (252)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999998742111122223 358899999999999999999999997775

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.17  E-value=1.4e-09  Score=106.79  Aligned_cols=294  Identities=13%  Similarity=0.092  Sum_probs=183.9

Q ss_pred             hhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCCC-----CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVDE-----QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL   77 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d~-----~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll   77 (318)
                      |+.++.+|+.||.-. ...+..+  ...++.++..+++.     ...+.+.++++++.++....+........+++..|.
T Consensus       160 ~e~A~~aL~nLa~d~-~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~  238 (510)
T 3ul1_B          160 SEQAVWALGNIAGDG-SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV  238 (510)
T ss_dssp             HHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHH
Confidence            567788888887511 0111111  12355566667653     345788999999999986655443444455666677


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------Ccccch
Q psy10471         78 ELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVL  143 (318)
Q Consensus        78 ~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p~~vi  143 (318)
                      ++++++...+|..|+++++.+++.-...       .+++.|+..|+..+...+...+.+++.++...       ....++
T Consensus       239 ~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l  318 (510)
T 3ul1_B          239 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGAL  318 (510)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence            8889988899999999999988532211       24677888888777778888888887664211       113578


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhH
Q psy10471        144 PALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDA  221 (318)
Q Consensus       144 p~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~  221 (318)
                      |.|...+++++.+++..++.++..++..-.. ....+  ..++|.+.+.+.+.+..+|+.++.+++.++..... ..-..
T Consensus       319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~-~~~~~  396 (510)
T 3ul1_B          319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQD-QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV-EQIVY  396 (510)
T ss_dssp             GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCH-HHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCH-HHHHH
Confidence            8898999999999999999999988753221 12222  35899999999999999999999999998765310 00001


Q ss_pred             HHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH---cChh-hHH---------HhHHHHhccccccchHHHHHHHHHh
Q psy10471        222 LTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA---LGPV-RIL---------QYVLQGLFHPARKVRDVYWKIYNSL  286 (318)
Q Consensus       222 i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a---lG~~-~~~---------~~vl~~l~~~a~~~r~~~w~i~~~~  286 (318)
                      +.+  .++.+...+...+++++..++++++.|...   +|.. .+.         ..+-....|++..+++.-.++.+..
T Consensus       397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y  476 (510)
T 3ul1_B          397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY  476 (510)
T ss_dssp             HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            111  123334555668899999999999888754   3322 222         2233333678885555555555666


Q ss_pred             hccccccccccCCCC
Q psy10471        287 YIGGQDALISAYPRI  301 (318)
Q Consensus       287 ~~~~~~~~~p~~p~~  301 (318)
                      |....++-..+.|..
T Consensus       477 f~~~~~~~~~~~~~~  491 (510)
T 3ul1_B          477 FSVEEEEDQNVVPET  491 (510)
T ss_dssp             CC-------------
T ss_pred             CCCccccccccCCCC
Confidence            644333444455554

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.16  E-value=3.5e-09  Score=104.21  Aligned_cols=244  Identities=14%  Similarity=0.097  Sum_probs=170.0

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChH------hHHHHHHhhcCCCC-----HHHHHHHHHHHHHHHhhCCCCCChhhHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLK------NLVEIIEHGLVDEQ-----QKVQENCIDLVGRIADRGPEYVSAREWMRIC   73 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~------~l~~~l~~~l~d~~-----~~vR~aa~~~LG~la~~~~~~i~~~~~~~il   73 (318)
                      |+.++.+|+.||.     -.|..+      ..++.++..+++.+     ..+.+.++++++.++....+........+++
T Consensus       179 ~e~A~~aL~nLa~-----~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l  253 (529)
T 3tpo_A          179 SEQAVWALGNIAG-----AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL  253 (529)
T ss_dssp             HHHHHHHHHHHHT-----TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-----cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence            5677778888775     122222      24566777776543     4568899999999998765544444445566


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------Cc
Q psy10471         74 FELLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SP  139 (318)
Q Consensus        74 ~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p  139 (318)
                      ..|.++++++...++..|+++++.++..-...       .+++.|+..|+.++...+..++.+++.++...       ..
T Consensus       254 p~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~  333 (529)
T 3tpo_A          254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID  333 (529)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence            66778889988899999999999988532211       24677888888777777888888887664211       11


Q ss_pred             ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc
Q psy10471        140 FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC  218 (318)
Q Consensus       140 ~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~  218 (318)
                      ..++|.|...+++++.+++..++.++..++..-.......+ ..++|.+...+.+.+..+|..++.+++.++..... ..
T Consensus       334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~-~~  412 (529)
T 3tpo_A          334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTV-EQ  412 (529)
T ss_dssp             TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCH-HH
Confidence            36889999999999999999999999998753221111122 35899999999999999999999999988764310 00


Q ss_pred             hhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        219 EDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       219 ~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      -..+.+  .++.+...+...+++++..++++++.|...
T Consensus       413 ~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          413 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            011111  233334555668899999999999888754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.14  E-value=1.5e-09  Score=94.90  Aligned_cols=212  Identities=13%  Similarity=0.071  Sum_probs=150.6

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------
Q psy10471         73 CFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------  138 (318)
Q Consensus        73 l~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------  138 (318)
                      +..|++.|++++..+|..|+++++.++..-...       ..++.|++.|++++...|..++.+++.++....       
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            455778889878899999999999998643322       368889999998777888888888887764321       


Q ss_pred             cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC
Q psy10471        139 PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF  216 (318)
Q Consensus       139 p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~  216 (318)
                      ...++|.+++.+++++.+++..++.++..++..-. .....+  ...+|.+.+++.+.++.+|..++.+++.++....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~--  160 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD--  160 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH--
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH--
Confidence            12689999999999999999999999998884211 112222  3588999999999999999999999999976421  


Q ss_pred             CchhHHH--HHHHhhhhcccCCChHHHHHHHHHHHHHHHHc-------ChhhHHHhHHHHhccccccchH-HHHHHHHHh
Q psy10471        217 GCEDALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL-------GPVRILQYVLQGLFHPARKVRD-VYWKIYNSL  286 (318)
Q Consensus       217 ~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al-------G~~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~  286 (318)
                      +....+.  ..++.+...+.++++++|..++.++..++..-       ......+.++..+-++...+++ +.|.+.|-.
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~  240 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK  240 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            1111111  14444556666788999999999999998521       1122456666666666666666 555555544


Q ss_pred             h
Q psy10471        287 Y  287 (318)
Q Consensus       287 ~  287 (318)
                      +
T Consensus       241 ~  241 (252)
T 4hxt_A          241 S  241 (252)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.11  E-value=4.8e-09  Score=109.83  Aligned_cols=258  Identities=12%  Similarity=0.087  Sum_probs=167.8

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhc----CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGL----VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l----~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      |..+..++..++.+.|..+.   +.+++.+.+.+    .+.++..|++++.++|.+++...+... +.+..++. .+.-+
T Consensus       424 r~~~~~~L~~~~~~~~~~~l---~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~-~~l~~l~~-~l~~l  498 (963)
T 2x19_B          424 RVDISDTLMYVYEMLGAELL---SNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS-DVVPGLIG-LIPRI  498 (963)
T ss_dssp             HHHHHHHHHHHHHHHTHHHH---HHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC-SHHHHHHH-HGGGS
T ss_pred             HHHHHHHHHHHHHHccHHHH---HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh-HHHHHHHH-HHHhC
Confidence            45566678888887775433   34444444444    557899999999999999998765332 22233333 22233


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhCH--H---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHHHHH
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIGP--H---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPALMNE  149 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~igp--~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L~~~  149 (318)
                      .++++.+|..+++++|+.++.+.+  .   .+++.+++.|++  ..+|..++.++..+++.|.    ||  .++..+.+.
T Consensus       499 ~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~  576 (963)
T 2x19_B          499 SISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDV  576 (963)
T ss_dssp             CCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            435677999999999999987653  2   356667777754  5677888889988887765    44  455555555


Q ss_pred             hcCC--cchHHHHHHHHHHHHHHHHc-cccccchhhhHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhhhcCCCc---
Q psy10471        150 YRVP--ELNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALMD-----RDLVHRQTACATIKHMALGVYGFGC---  218 (318)
Q Consensus       150 ~~d~--~~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~~~l~~-----~~~~~R~~a~~~i~~la~~~~~~~~---  218 (318)
                      +..+  +.+.+..++++++.+..+.+ ..+.+|+..+++.+...|..     .++..+......++.++...+..+.   
T Consensus       577 l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~  656 (963)
T 2x19_B          577 LMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH  656 (963)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred             hccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            5532  45677889999999998776 67889999999888877742     3566666555555444333332221   


Q ss_pred             ---------------------hhHHHHHHHhhhhcc--cCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471        219 ---------------------EDALTHLLNYVWPNI--FETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF  269 (318)
Q Consensus       219 ---------------------~~~i~hll~~l~~~i--~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~  269 (318)
                                           ......+.+.+...+  +..++++...++.++++++..+|.++  +.|.+++.++
T Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~  732 (963)
T 2x19_B          657 EDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLG  732 (963)
T ss_dssp             C---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHH
T ss_pred             cccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHH
Confidence                                 112222333221111  12467899999999999999999754  5566666553

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.07  E-value=5.2e-09  Score=109.92  Aligned_cols=257  Identities=11%  Similarity=0.087  Sum_probs=159.6

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCC-----CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVD-----EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL   79 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d-----~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~   79 (318)
                      |..+-.++..++.+.|..   .++.+++.+.+.++.     .++..|++|+.++|.++++...... ..+..++. ++..
T Consensus       438 R~~~~~~l~~~~~~~~~~---~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~-~l~~  512 (971)
T 2x1g_F          438 RQDISDTFMYCYDVLNDY---ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMR-VLAE  512 (971)
T ss_dssp             HHHHHHHHHHHHTTCTTH---HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHH-HHHh
Confidence            445566777777766633   333444444444433     6789999999999999987765432 23333333 3333


Q ss_pred             hh--hchHHHHHHHHHHHHHHHhhhCHH-----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHH
Q psy10471         80 LK--AHKKAIRRATVNTFGYIAKAIGPH-----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPAL  146 (318)
Q Consensus        80 L~--d~~~~vR~~av~~lg~la~~igp~-----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L  146 (318)
                      +.  |+++.||..+++++|++++.++++     .+++.+++.| +  .+++..++.|+..+++.|.    ||  .++..+
T Consensus       513 l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l  589 (971)
T 2x1g_F          513 IPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNAC  589 (971)
T ss_dssp             SCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            44  457889999999999999988743     4566677777 3  5677788888888887775    33  455555


Q ss_pred             HHHhcCC--cchHHHHHHHHHHHHHHHHc-cccccchhhhHHHHHHHHh----cC--CHHHHHHHHHHHHHHhhhhcCCC
Q psy10471        147 MNEYRVP--ELNVQNGVLKALSFLFEYIG-EMGKDYIYAVTPLLEDALM----DR--DLVHRQTACATIKHMALGVYGFG  217 (318)
Q Consensus       147 ~~~~~d~--~~~v~~~vl~al~~i~~~lg-~~~~~yl~~iiP~l~~~l~----~~--~~~~R~~a~~~i~~la~~~~~~~  217 (318)
                      .+.+..+  +.+.+..+.++++.++.+++ ....+|+..+++.+...+.    ..  +...+......++.++.++...+
T Consensus       590 ~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~  669 (971)
T 2x1g_F          590 HASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLN  669 (971)
T ss_dssp             HHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcC
Confidence            5666553  35677899999999998775 5567777776666665543    22  44455555666655554443221


Q ss_pred             c---------------hhHHHHHHHhhhhcc--cCCChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHhc
Q psy10471        218 C---------------EDALTHLLNYVWPNI--FETSPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGLF  269 (318)
Q Consensus       218 ~---------------~~~i~hll~~l~~~i--~d~~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l~  269 (318)
                      .               .....++++.+...+  +..++++...++.+++.++.++|.++  ++|.+++.++
T Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~  740 (971)
T 2x1g_F          670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIV  740 (971)
T ss_dssp             C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHH
T ss_pred             CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
Confidence            1               112222333222111  22467899999999999999998764  6666666663

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.06  E-value=8.9e-08  Score=80.68  Aligned_cols=216  Identities=18%  Similarity=0.251  Sum_probs=162.8

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhh
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKA  101 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~  101 (318)
                      +..|=.+++..++..|.|+-|.||.+|+..+..+++.-     ++-+.|.+..|+-+++. ..-..-.+--++||+++. 
T Consensus        26 ~a~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-----~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-   99 (253)
T 2db0_A           26 MAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-----EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-   99 (253)
T ss_dssp             HHHHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-----GGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-
T ss_pred             HHHhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-----HHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-
Confidence            44566788899999999999999999999999998743     45677888888888776 344455677899999996 


Q ss_pred             hCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc
Q psy10471        102 IGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG  176 (318)
Q Consensus       102 igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~  176 (318)
                      +.|.   .+++.+..+++..+-+.|...+-++..|+...-.  ..+.--++..+.+++..=+..+++    +..++|..-
T Consensus       100 i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLn----Fi~alGen~  175 (253)
T 2db0_A          100 EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALN----FIEAMGENS  175 (253)
T ss_dssp             HCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHH----HHHTCCTTT
T ss_pred             hCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHH----HHHHHhccC
Confidence            8887   4678889999988778888888888777654321  133444666667776444444443    334688887


Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      ..|+...+|.+..++.|+|..+|..+..++.++|..-.      .+-++....+..+.|.+..|...+-+++..+...
T Consensus       176 ~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~np------klRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~  247 (253)
T 2db0_A          176 FKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLND------KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLL  247 (253)
T ss_dssp             HHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH------HHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred             ccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCH------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            88998899999999999999999999999999988752      1222222334666778899999999999888643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.06  E-value=1.5e-08  Score=101.12  Aligned_cols=278  Identities=13%  Similarity=0.036  Sum_probs=185.9

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA   86 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~   86 (318)
                      ...+++...  ..|.++....    +-++..++++++.+|+.+-.+++.+++..++     ...-++..+.+.|+++++.
T Consensus        33 ~~~kli~~~--~~G~d~~~~~----~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e-----~~~l~~n~l~kdL~~~n~~  101 (591)
T 2vgl_B           33 AVKKVIAAM--TVGKDVSSLF----PDVVNCMQTDNLELKKLVYLYLMNYAKSQPD-----MAIMAVNSFVKDCEDPNPL  101 (591)
T ss_dssp             HHHHHHHHH--HTTCCCGGGH----HHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH-----HHHTTHHHHGGGSSSSSHH
T ss_pred             HHHHHHHHH--HCCCChHHHH----HHHHHHhCCCCHHHHHHHHHHHHHHcccCch-----HHHHHHHHHHHHcCCCCHH
Confidence            344455433  3477665544    4455578899999999999999999885322     2222344566777888999


Q ss_pred             HHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-----cchHHHHHHhcCCcchHHHHH
Q psy10471         87 IRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-----TVLPALMNEYRVPELNVQNGV  161 (318)
Q Consensus        87 vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-----~vip~L~~~~~d~~~~v~~~v  161 (318)
                      +|..|++++|.++..--...+.+.+.+.|++.+-.+|..++.++..++..+ |-     .++|.+...+.|+++.++..+
T Consensus       102 ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A  180 (591)
T 2vgl_B          102 IRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANA  180 (591)
T ss_dssp             HHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHH
Confidence            999999999987632111246777888888777789999999999888743 42     477889999999999999999


Q ss_pred             HHHHHHHHHHHccc-cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHH
Q psy10471        162 LKALSFLFEYIGEM-GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHL  240 (318)
Q Consensus       162 l~al~~i~~~lg~~-~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~v  240 (318)
                      +.++..+.+.-... +.+..+..++.+.+.+.+.++..+.....+++.+.+     ..++....+++.+.+.+.+.++.|
T Consensus       181 ~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~-----~~~~~~~~~l~~l~~~l~~~~~~V  255 (591)
T 2vgl_B          181 VAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP-----KDDREAQSICERVTPRLSHANSAV  255 (591)
T ss_dssp             HHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC-----CSHHHHHHHHHHHTTCSCSSTTHH
T ss_pred             HHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHHcCCChHH
Confidence            99999887643222 234446667777788888999888877776654432     123445678888888888899999


Q ss_pred             HHHHHHHHHHHHHHc--ChhhHH---HhHHHH---hccccccchHHHHHHHHHhhccccccccccCCCC
Q psy10471        241 VQAFMDAVEGLRVAL--GPVRIL---QYVLQG---LFHPARKVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       241 r~~ii~~i~~i~~al--G~~~~~---~~vl~~---l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      +..++.++..+...+  +++.+.   +.+.+.   +......+|-.--+.++.+...+.+.+.+++..+
T Consensus       256 ~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~  324 (591)
T 2vgl_B          256 VLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF  324 (591)
T ss_dssp             HHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT
T ss_pred             HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh
Confidence            998888888776544  223222   222232   2333444444434444444444456666655433

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.04  E-value=1.2e-08  Score=106.85  Aligned_cols=277  Identities=12%  Similarity=0.095  Sum_probs=181.5

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      +|++++.++|.++........++++.+++.+ +.+.+++|.||.++++++|+++++....  ++.+.+++..+++.|++ 
T Consensus       465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~~~vr~~~~~~l~~~~~~l~~~--~~~l~~vl~~l~~~l~~-  540 (963)
T 2x19_B          465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISNVQLADTVMFTIGALSEWLADH--PVMINSVLPLVLHALGN-  540 (963)
T ss_dssp             HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCSHHHHHHHHHHHHHTHHHHHHC--HHHHTTTHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHhCC-
Confidence            6889999999999855446788999999954 4555568999999999999999864431  35566677777777766 


Q ss_pred             hHHHHHHHHHHHHHHHhhhC----HH--HHHHHHHHhhccc--chhhHHHHHHHHHHHHhhc-----Ccc--cchHHHHH
Q psy10471         84 KKAIRRATVNTFGYIAKAIG----PH--DVLATLLNNLKVQ--ERQNRVCTTVAIAIVAETC-----SPF--TVLPALMN  148 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~ig----p~--~~l~~Ll~~Lk~~--~~~~R~~~~~ai~~i~~~~-----~p~--~vip~L~~  148 (318)
                       +.||..|..+|..+++.++    |+  .++..|...+...  +...|..+..+++.++...     .|+  .+++.+.+
T Consensus       541 -~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~  619 (963)
T 2x19_B          541 -PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQ  619 (963)
T ss_dssp             -GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence             7799999999999987654    44  4566666666532  3467888899998776433     233  66766666


Q ss_pred             Hhc----CC-cchHH---HHHHHHHHHHHHHHccc----------------------cccchhhhHHHHHHHHhc--CCH
Q psy10471        149 EYR----VP-ELNVQ---NGVLKALSFLFEYIGEM----------------------GKDYIYAVTPLLEDALMD--RDL  196 (318)
Q Consensus       149 ~~~----d~-~~~v~---~~vl~al~~i~~~lg~~----------------------~~~yl~~iiP~l~~~l~~--~~~  196 (318)
                      .+.    .+ +.+.+   ...+.+++.++++++..                      +.++...++|.+..++..  .+.
T Consensus       620 ~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  699 (963)
T 2x19_B          620 QLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDA  699 (963)
T ss_dssp             HHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCch
Confidence            553    11 22222   46778888899988742                      344667889998888853  357


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh-----h---HHHhHHHHh
Q psy10471        197 VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV-----R---ILQYVLQGL  268 (318)
Q Consensus       197 ~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~-----~---~~~~vl~~l  268 (318)
                      .+++.++.+++.++..++ ..+...+..+.+.++.......   ...++..++.+....|.+     .   +.+.++..+
T Consensus       700 ~v~e~~~~~l~~~~~~~~-~~~~~~l~~~~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~  775 (963)
T 2x19_B          700 QVVEAVCAIFEKSVKTLL-DDFAPMVPQLCEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVT  775 (963)
T ss_dssp             HHHHHHHHHHHHHHHHSS-STTGGGHHHHHHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhc-ccccccHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence            889999999998877653 2334455555555443322111   124666777777733332     1   222222222


Q ss_pred             c-------cccccchHHHHHHHHHhhcc
Q psy10471        269 F-------HPARKVRDVYWKIYNSLYIG  289 (318)
Q Consensus       269 ~-------~~a~~~r~~~w~i~~~~~~~  289 (318)
                      +       ...+.+++.|-.+++.+-..
T Consensus       776 l~~~~~~~~~~pd~~~~~f~ll~~~~~~  803 (963)
T 2x19_B          776 LTLFQQGPRDHPDIVDSFMQLLAQALKR  803 (963)
T ss_dssp             HHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence            1       12356777777777665443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.04  E-value=1e-08  Score=103.05  Aligned_cols=172  Identities=12%  Similarity=0.069  Sum_probs=115.0

Q ss_pred             chHHHHHHHHHHHHHHHhhhCHH------HHHHHHHHhhc---ccchhhHHHHHHHHHHHHhhcCcc---cchHHHHHHh
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLK---VQERQNRVCTTVAIAIVAETCSPF---TVLPALMNEY  150 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp~------~~l~~Ll~~Lk---~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L~~~~  150 (318)
                      .++|.+...++.++.++. -+|.      +++..+++.+.   .....+...++.++..+..  .|.   .+++.|...+
T Consensus       246 ~~~~~q~~il~~L~~l~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L  322 (618)
T 1w63_A          246 SDPFLQVRILRLLRILGR-NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFL  322 (618)
T ss_dssp             SCHHHHHHHHHHHHHHTT-TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            368888889999988875 3443      23344433221   1122344444444433211  121   3566777778


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhh
Q psy10471        151 RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVW  230 (318)
Q Consensus       151 ~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~  230 (318)
                      .+++++++..++.++..+...-...+.+|.    +.+..++.+.|..+|..+.+++..++...   ..+..+..++.|+.
T Consensus       323 ~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~~~---nv~~iv~eL~~~l~  395 (618)
T 1w63_A          323 LNNDKNIRYVALTSLLKTVQTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVNGN---NIRGMMKELLYFLD  395 (618)
T ss_dssp             TCSSTTTHHHHHHHHHHHHHHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCCSS---STHHHHHHHHHHHH
T ss_pred             hCCCCchHHHHHHHHHHHHhhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcccc---cHHHHHHHHHHHHH
Confidence            888999999999999999876544444444    56677778999999999999998885532   34566667777653


Q ss_pred             hcccCCChHHHHHHHHHHHHHHHHcCh--hhHHHhHHHHh
Q psy10471        231 PNIFETSPHLVQAFMDAVEGLRVALGP--VRILQYVLQGL  268 (318)
Q Consensus       231 ~~i~d~~~~vr~~ii~~i~~i~~alG~--~~~~~~vl~~l  268 (318)
                          +.+.++|..++.+|+.++....+  +.+.+.++..+
T Consensus       396 ----~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL  431 (618)
T 1w63_A          396 ----SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVL  431 (618)
T ss_dssp             ----HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred             ----hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence                36789999999999999998754  33666666555

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.95  E-value=9.9e-08  Score=95.81  Aligned_cols=264  Identities=14%  Similarity=0.094  Sum_probs=174.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      .++.+...+.+.++.+|.+|+.+|+.++...+..     +.+....++..++|+..++|+.|++.++.+++.-.-..++.
T Consensus       314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~-----~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~  388 (618)
T 1w63_A          314 AINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA-----VQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMK  388 (618)
T ss_dssp             HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH-----HGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHH
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH-----HHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHH
Confidence            4566777788889999999999999999864322     22233345677899889999999999999987655456788


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471        110 TLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL  187 (318)
Q Consensus       110 ~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l  187 (318)
                      .|++.+.+.+...|..++.+|+.++..+.|.  ..++.+++.+++....+...++.++..++.. .....   ..+++.+
T Consensus       389 eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~-~p~l~---~~~v~~L  464 (618)
T 1w63_A          389 ELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN-SVEMH---AYTVQRL  464 (618)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHH-SCSTH---HHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc-ChhHH---HHHHHHH
Confidence            8888888777889999999999999988763  7899999999887766776677777777764 22221   3355666


Q ss_pred             HHHHhc--CCHHHHHHHHHHHHHHhhhhcCC---C------chhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        188 EDALMD--RDLVHRQTACATIKHMALGVYGF---G------CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       188 ~~~l~~--~~~~~R~~a~~~i~~la~~~~~~---~------~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                      ...+.+  ......+.+++.+|..+..+...   +      ..+.+..++..++..- .+++.+|..++.++.++.....
T Consensus       465 ~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~  543 (618)
T 1w63_A          465 YKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIMKLSTRFT  543 (618)
T ss_dssp             HHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCc
Confidence            666654  22344456899999988765321   0      1112222222223321 5789999999999999988775


Q ss_pred             hh-hHHHhHHHHhc-cccccchH---HHHHHHHHhhccccccccccCCCCCcc
Q psy10471        257 PV-RILQYVLQGLF-HPARKVRD---VYWKIYNSLYIGGQDALISAYPRIQND  304 (318)
Q Consensus       257 ~~-~~~~~vl~~l~-~~a~~~r~---~~w~i~~~~~~~~~~~~~p~~p~~~~~  304 (318)
                      .. .....++.... +.+..+|+   .||+++.. .......+..-.|.+++.
T Consensus       544 ~~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~-~~~~~~~vl~~~P~~~~~  595 (618)
T 1w63_A          544 CTVNRIKKVVSIYGSSIDVELQQRAVEYNALFKK-YDHMRSALLERMPVMEKV  595 (618)
T ss_dssp             SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT-TTTHHHHHHSCCCCCCC-
T ss_pred             chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-cHHHHHHHhhcCCCCCcc
Confidence            42 22333333332 23334555   78888754 211112233336666543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.95  E-value=9.2e-09  Score=94.26  Aligned_cols=176  Identities=10%  Similarity=0.082  Sum_probs=124.7

Q ss_pred             hhhhHHHHHHHHHHHhcc--CcCCChHhHHHHHHh-hcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGC--AILPHLKNLVEIIEH-GLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLE   78 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~-~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~   78 (318)
                      +|..++..+.++..-...  .+  .-...+|.+++ +|+++++.+|..|+++||.++.+.+..-  ..+.  ..+..|++
T Consensus        56 ~k~~Al~~L~~lv~~~dna~~~--~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~--~~vv~~g~l~~Ll~  131 (296)
T 1xqr_A           56 EREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQ--EQVLGLGALRKLLR  131 (296)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHH--HHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH--HHHHHCCCHHHHHH
Confidence            455556666555542111  11  11245677888 9999999999999999999998654311  0111  24555677


Q ss_pred             Hhhh-chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchH
Q psy10471         79 LLKA-HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV  157 (318)
Q Consensus        79 ~L~d-~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v  157 (318)
                      +|++ ++..+|+.|+++++.++..-.|.  ...+..                          ...+|.|...+++++..+
T Consensus       132 LL~~~~~~~v~~~A~~ALsnl~~~~~~~--~~~~~~--------------------------~ggi~~L~~lL~~~d~~v  183 (296)
T 1xqr_A          132 LLDRDACDTVRVKALFAISCLVREQEAG--LLQFLR--------------------------LDGFSVLMRAMQQQVQKL  183 (296)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHH--HHHHHH--------------------------TTHHHHHHHHHHSSCHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHcCCcHH--HHHHHH--------------------------CCCHHHHHHHHcCCCHHH
Confidence            7786 47889999999999988633221  111100                          145777888888888999


Q ss_pred             HHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        158 QNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       158 ~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                      +..++.++.+++.. +.....++  ..++|.+..++.+.+..+|..++.+++.++..
T Consensus       184 ~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          184 KVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999886 44445555  35899999999999999999999999998766

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.92  E-value=8.5e-09  Score=109.15  Aligned_cols=282  Identities=12%  Similarity=0.115  Sum_probs=179.5

Q ss_pred             hhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLV-----DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL   77 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~-----d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll   77 (318)
                      .+++++-++|.++..... ...|++++++|.++.++.     |.++.||..+++++|+++++...  .++.+.+++..|+
T Consensus       469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~--~~~~L~~vl~~L~  546 (1023)
T 4hat_C          469 NINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKLF  546 (1023)
T ss_dssp             HHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence            478899999998863322 267999999999988876     45677899999999999997642  2677888888999


Q ss_pred             HHhhhchHHHHHHHHHHHHHHHhhhCHHH----------HHHHHHHhhc----ccchhhHHHHHHHHHHHHhhcCcc---
Q psy10471         78 ELLKAHKKAIRRATVNTFGYIAKAIGPHD----------VLATLLNNLK----VQERQNRVCTTVAIAIVAETCSPF---  140 (318)
Q Consensus        78 ~~L~d~~~~vR~~av~~lg~la~~igp~~----------~l~~Ll~~Lk----~~~~~~R~~~~~ai~~i~~~~~p~---  140 (318)
                      +.+.++++.+..+|.++|..+++.++..-          .++.++..+.    .-+.+.+..+++|++.+.....+.   
T Consensus       547 ~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~  626 (1023)
T 4hat_C          547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAER  626 (1023)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhH
Confidence            99988888999999999999999876431          2444444332    223356678899999877655431   


Q ss_pred             -----cchHHHHHHhc--------CCcc-----hHH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-----
Q psy10471        141 -----TVLPALMNEYR--------VPEL-----NVQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-----  195 (318)
Q Consensus       141 -----~vip~L~~~~~--------d~~~-----~v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~-----  195 (318)
                           .+++.+...++        +|+.     .++  ..+++++..++.++|..|.+|+..+.|.+.++.+.-+     
T Consensus       627 ~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~  706 (1023)
T 4hat_C          627 NRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISA  706 (1023)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 34444443331        2221     122  6689999999999999999999888888887753211     


Q ss_pred             ------------H------HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccC----CChHHH-HHHHHHHHHHH
Q psy10471        196 ------------L------VHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE----TSPHLV-QAFMDAVEGLR  252 (318)
Q Consensus       196 ------------~------~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d----~~~~vr-~~ii~~i~~i~  252 (318)
                                  +      .+|+....++.+-+....  +.+....++.+-++..+..    ..|+.| ..++.....++
T Consensus       707 ~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~--~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv  784 (1023)
T 4hat_C          707 QVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKAR--NLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVV  784 (1023)
T ss_dssp             HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCS--CHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHH
T ss_pred             HHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHH
Confidence                        1      223334444444333321  2222233333332222222    223332 35777888888


Q ss_pred             HHcChh--hHHHhHHHHhc-----------cccccchHHHHHHHHHhhcc
Q psy10471        253 VALGPV--RILQYVLQGLF-----------HPARKVRDVYWKIYNSLYIG  289 (318)
Q Consensus       253 ~alG~~--~~~~~vl~~l~-----------~~a~~~r~~~w~i~~~~~~~  289 (318)
                      .-+|..  ...|.++..+|           ++.+.-|+.+-+++.++-..
T Consensus       785 ~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~  834 (1023)
T 4hat_C          785 EKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEK  834 (1023)
T ss_dssp             HHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHH
Confidence            888853  12333333332           34455678888888776444

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.92  E-value=1.7e-08  Score=104.12  Aligned_cols=261  Identities=12%  Similarity=0.029  Sum_probs=176.0

Q ss_pred             hhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          4 DKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      -|..++.+|+.|+..... ......+..++.++..|++ .++.+|+.|+.+|..++..........+ ...+..|+++|+
T Consensus       166 vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~  244 (780)
T 2z6g_A          166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLG  244 (780)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHc
Confidence            366788888888873321 1112234678888888875 4899999999999998864211000111 135556778889


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------CcccchHHHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVLPALM  147 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p~~vip~L~  147 (318)
                      +++..+|..|+++++.++..-..       ...++.|++.|+..+...|..++.++..++..+       .....++.|+
T Consensus       245 ~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv  324 (780)
T 2z6g_A          245 SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV  324 (780)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH
Confidence            98889999999999999865332       135778999998766677777777777665321       1236789999


Q ss_pred             HHhcCCcchH-HHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH
Q psy10471        148 NEYRVPELNV-QNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH  224 (318)
Q Consensus       148 ~~~~d~~~~v-~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h  224 (318)
                      +.+++.+.+. +..++.++..+...  ....+.+  ..++|.+..++.+.+..+++.++.++..++......   .....
T Consensus       325 ~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~  399 (780)
T 2z6g_A          325 NIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEG  399 (780)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHHTS--TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhcC--hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhh
Confidence            9999876554 45667777766542  2222222  346899999999999999999999999988654321   12234


Q ss_pred             HHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh-------hhHHHhHHHHhcc
Q psy10471        225 LLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP-------VRILQYVLQGLFH  270 (318)
Q Consensus       225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~-------~~~~~~vl~~l~~  270 (318)
                      .++.+...+.+.++++|..++.++..++..-..       ....+.++..+.+
T Consensus       400 ~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~  452 (780)
T 2z6g_A          400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR  452 (780)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence            555556667778999999999988887542111       1245666666655

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.89  E-value=1.5e-07  Score=91.36  Aligned_cols=240  Identities=10%  Similarity=0.076  Sum_probs=156.0

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH----
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP----  104 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp----  104 (318)
                      ..++.+.+.+++.++.+++.++++|+.++...+......   ..+..|+++++++++.+|..|.++++.++.. ++    
T Consensus       227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~---~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~  302 (529)
T 1jdh_A          227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKM  302 (529)
T ss_dssp             THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCH---HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHH
T ss_pred             CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHH---hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHH
Confidence            568889999999999999999999999998765433233   4555566778888889999999999999763 23    


Q ss_pred             ----HHHHHHHHHhhcccc--hhhHHHHHHHHHHHHhhcC----------cccchHHHHHHhcCCc-chHHHHHHHHHHH
Q psy10471        105 ----HDVLATLLNNLKVQE--RQNRVCTTVAIAIVAETCS----------PFTVLPALMNEYRVPE-LNVQNGVLKALSF  167 (318)
Q Consensus       105 ----~~~l~~Ll~~Lk~~~--~~~R~~~~~ai~~i~~~~~----------p~~vip~L~~~~~d~~-~~v~~~vl~al~~  167 (318)
                          ...++.|+..|+..+  ...|.....+++.++....          ....+|.|.+.++++. ..++..++.++..
T Consensus       303 ~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~n  382 (529)
T 1jdh_A          303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN  382 (529)
T ss_dssp             HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHH
Confidence                135777888887532  3677777778876653211          1257999999999886 4899999999998


Q ss_pred             HHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHH----------------------HhhhhcCCCchhHHH
Q psy10471        168 LFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKH----------------------MALGVYGFGCEDALT  223 (318)
Q Consensus       168 i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~----------------------la~~~~~~~~~~~i~  223 (318)
                      +..  +......+  ..++|.+.+.+.+.+..+|+.++++++.                      ++...   .....+.
T Consensus       383 l~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~---~~~~~l~  457 (529)
T 1jdh_A          383 LAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV---HNRIVIR  457 (529)
T ss_dssp             HTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH---HHHHHHH
T ss_pred             Hhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc---hHHHHHh
Confidence            875  33222333  3588999999988888888766655443                      21110   0000010


Q ss_pred             --HHHHhhhhcccCCChHHHHHHHHHHHHHHHH------cChhhHHHhHHHHhccccccchH
Q psy10471        224 --HLLNYVWPNIFETSPHLVQAFMDAVEGLRVA------LGPVRILQYVLQGLFHPARKVRD  277 (318)
Q Consensus       224 --hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a------lG~~~~~~~vl~~l~~~a~~~r~  277 (318)
                        ..++.+...+.+.+++++..+..++..++..      +......+.+...+.|++..++.
T Consensus       458 ~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~  519 (529)
T 1jdh_A          458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT  519 (529)
T ss_dssp             HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHH
T ss_pred             ccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHH
Confidence              1224445666778899999888888776521      11122445566666677765444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.87  E-value=1.8e-07  Score=97.73  Aligned_cols=227  Identities=17%  Similarity=0.247  Sum_probs=174.6

Q ss_pred             CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q psy10471         22 AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE--YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIA   99 (318)
Q Consensus        22 ~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~--~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la   99 (318)
                      ...|  ..++..+...++|..+.  +.|+.+++.+|+..+.  .+ -+.+.+++..+++...|....||.+|-.+.-.+.
T Consensus        49 ~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~  123 (986)
T 2iw3_A           49 HDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV-EPYIVQLVPAICTNAGNKDKEIQSVASETLISIV  123 (986)
T ss_dssp             SSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT-HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             cccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc-ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            3445  37888888888886555  9999999999975543  22 4566677777888888888889999999999999


Q ss_pred             hhhCHH---HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHHHH
Q psy10471        100 KAIGPH---DVLATLLNNLKVQER-QNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFL  168 (318)
Q Consensus       100 ~~igp~---~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~~i  168 (318)
                      +.+.|+   .+++.|++.|+...+ |.+......+..+++.+ |       -.++|.+...+.|--+++..+..+++..+
T Consensus       124 ~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~  202 (986)
T 2iw3_A          124 NAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA  202 (986)
T ss_dssp             HHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence            999996   578888888876555 78888888888877665 4       17899999999998889988888888877


Q ss_pred             HHHHcc-ccccchh----------------------------------hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        169 FEYIGE-MGKDYIY----------------------------------AVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       169 ~~~lg~-~~~~yl~----------------------------------~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      |..++. ...+++|                                  -++|.+.+-+++++...+++++..++.|+.-+
T Consensus       203 ~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          203 TETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             GGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence            777665 3444443                                  34577777778888888999999998887666


Q ss_pred             cCCCchhHHHHHHHhhhhcccC-----CChHHHHHHHHHHHHHHHHcCh
Q psy10471        214 YGFGCEDALTHLLNYVWPNIFE-----TSPHLVQAFMDAVEGLRVALGP  257 (318)
Q Consensus       214 ~~~~~~~~i~hll~~l~~~i~d-----~~~~vr~~ii~~i~~i~~alG~  257 (318)
                         ........++|.++|.+.-     .+|++|.-.-.++..+..+.|.
T Consensus       283 ---~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          283 ---EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             ---CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence               4545566777887877762     4799999888888777776553

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.86  E-value=6.3e-07  Score=92.24  Aligned_cols=275  Identities=8%  Similarity=0.025  Sum_probs=181.8

Q ss_pred             hhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC--C---CCChhhHHHHHHHHHH
Q psy10471          6 NLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP--E---YVSAREWMRICFELLE   78 (318)
Q Consensus         6 ~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~--~---~i~~~~~~~il~~Ll~   78 (318)
                      ..++.+++.++.  +...+-++.  .+ |.+..++++.++.+|.-|+.+|..++..++  +   .+.-....+++..+.+
T Consensus       308 ~~A~~al~~aa~--~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~  384 (810)
T 3now_A          308 RVACECLIAASS--KKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR  384 (810)
T ss_dssp             HHHHHHHHHHTT--SHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--CcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHH
Confidence            356677777544  232222222  23 888888988889999999999999986433  1   1111224455555556


Q ss_pred             Hhhhc--hHHHHHHHHHHHHHHHhhhCHH---------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC---------
Q psy10471         79 LLKAH--KKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS---------  138 (318)
Q Consensus        79 ~L~d~--~~~vR~~av~~lg~la~~igp~---------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~---------  138 (318)
                      +|.++  ...+|+.|++++++++.  +|.         .+++.|+..|+.++....+.++.+++.++....         
T Consensus       385 lL~~~~~d~~v~~~AveaLayLS~--~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~  462 (810)
T 3now_A          385 FLIKPGKDKDIRRWAADGLAYLTL--DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMI  462 (810)
T ss_dssp             HHHCSSCCSSHHHHHHHHHHHHTT--SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCG
T ss_pred             HhcCCCCCHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHH
Confidence            66775  67799999999999874  432         468889999987777788888888887764210         


Q ss_pred             ------------------------------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHH
Q psy10471        139 ------------------------------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPL  186 (318)
Q Consensus       139 ------------------------------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~  186 (318)
                                                    -..++|.|.+.++.++++++..++.++.++..  ...+...+  ...+|.
T Consensus       463 ~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~--d~~~r~~Vv~~Gaip~  540 (810)
T 3now_A          463 ELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG--LKELRGKVVQEGGVKA  540 (810)
T ss_dssp             GGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHH
T ss_pred             HHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHH
Confidence                                          01479999999999999999999999999974  33455555  348899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-c-hhHHHHHHHhhhhcccCCChHH-HHHHHHHHHHHHHH-------cC
Q psy10471        187 LEDALMDRDLVHRQTACATIKHMALGVYGFG-C-EDALTHLLNYVWPNIFETSPHL-VQAFMDAVEGLRVA-------LG  256 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~-~~~i~hll~~l~~~i~d~~~~v-r~~ii~~i~~i~~a-------lG  256 (318)
                      +.+++.+.+...|+.++++++.++......- + .......++.+...+..+...+ +..++.++..++..       +-
T Consensus       541 Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii  620 (810)
T 3now_A          541 LLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRII  620 (810)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999999999999999876532100 0 0011122333334443232223 33455565555432       11


Q ss_pred             hhhHHHhHHHHhccccccchH-HHHHHHHHhh
Q psy10471        257 PVRILQYVLQGLFHPARKVRD-VYWKIYNSLY  287 (318)
Q Consensus       257 ~~~~~~~vl~~l~~~a~~~r~-~~w~i~~~~~  287 (318)
                      .....|.+...+.|.+..++. ..|.++|.+.
T Consensus       621 ~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          621 KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            123577888888888877666 5666666543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.86  E-value=2.4e-07  Score=93.10  Aligned_cols=246  Identities=12%  Similarity=0.027  Sum_probs=168.9

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH---
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP---  104 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp---  104 (318)
                      ..+|.+.++|+++++.+|+.|+.+|++++..............++..|++.|++ ++..+|+.|..++..++..-..   
T Consensus        14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~   93 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   93 (644)
T ss_dssp             TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHH
Confidence            357888888899999999999999999998654211011122455667777776 4778999999999887753221   


Q ss_pred             ---HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        105 ---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       105 ---~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                         ...++.|++.|+.++...|..++.++..++....       ...++|.|++.+++++..++..++.++..+... ..
T Consensus        94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-~~  172 (644)
T 2z6h_A           94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQ  172 (644)
T ss_dssp             HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc-Cc
Confidence               1368889999988777888888888887764322       136899999999998888888888888777642 11


Q ss_pred             ccccch--hhhHHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhcCCCchhHHH-HHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471        175 MGKDYI--YAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGCEDALT-HLLNYVWPNIFETSPHLVQAFMDAVEG  250 (318)
Q Consensus       175 ~~~~yl--~~iiP~l~~~l~~~~-~~~R~~a~~~i~~la~~~~~~~~~~~i~-hll~~l~~~i~d~~~~vr~~ii~~i~~  250 (318)
                      ..+..+  ...+|.+.+++++.+ ...+..++.++..++..-.  .....+. ..++.+...+.+.+++++..++.++..
T Consensus       173 ~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~--~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n  250 (644)
T 2z6h_A          173 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS--NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  250 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT--HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc--cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            112122  346888999998665 5667788888877764211  1111111 134555666677889999999999999


Q ss_pred             HHHHcCh----hhHHHhHHHHhccccccchH
Q psy10471        251 LRVALGP----VRILQYVLQGLFHPARKVRD  277 (318)
Q Consensus       251 i~~alG~----~~~~~~vl~~l~~~a~~~r~  277 (318)
                      ++..-..    ....|.++..+.+....+++
T Consensus       251 L~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~  281 (644)
T 2z6h_A          251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVT  281 (644)
T ss_dssp             HGGGCTTCCSCHHHHHHHHHHTTCSCHHHHH
T ss_pred             HhhcchhhhhhhhHHHHHHHHHcCCCHHHHH
Confidence            9865322    34666677766666665555

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=98.83  E-value=3.7e-07  Score=94.09  Aligned_cols=241  Identities=10%  Similarity=0.082  Sum_probs=159.4

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH----
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP----  104 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp----  104 (318)
                      ..++.++..+++.++.+++.|+++|+.++..........   .++..|+++|++.+..+|..|+++++.++..-..    
T Consensus       360 g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~---~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~  436 (780)
T 2z6g_A          360 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM  436 (780)
T ss_dssp             THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCH---HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhh---hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            357889999999999999999999999998765433233   4555566778888889999999999999853211    


Q ss_pred             ---HHHHHHHHHhhccc-ch-hhHHHHHHHHHHHHhhcC----------cccchHHHHHHhcCCcc-hHHHHHHHHHHHH
Q psy10471        105 ---HDVLATLLNNLKVQ-ER-QNRVCTTVAIAIVAETCS----------PFTVLPALMNEYRVPEL-NVQNGVLKALSFL  168 (318)
Q Consensus       105 ---~~~l~~Ll~~Lk~~-~~-~~R~~~~~ai~~i~~~~~----------p~~vip~L~~~~~d~~~-~v~~~vl~al~~i  168 (318)
                         ...++.|++.|+.. +. .+|..++.+++.++....          ....+|.|++.++.++. .++..++.++..+
T Consensus       437 i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nL  516 (780)
T 2z6g_A          437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL  516 (780)
T ss_dssp             HHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence               13577888888753 32 678888888887653211          13579999999988875 8999999999998


Q ss_pred             HHHHccccccch--hhhHHHHHHHHhcCCHH----------------------HHHHHHHHHHHHhhhhcCCCchhHH--
Q psy10471        169 FEYIGEMGKDYI--YAVTPLLEDALMDRDLV----------------------HRQTACATIKHMALGVYGFGCEDAL--  222 (318)
Q Consensus       169 ~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~----------------------~R~~a~~~i~~la~~~~~~~~~~~i--  222 (318)
                      ..  +......+  ..++|.+.+++.+.+..                      ++..++.+++.++....   ....+  
T Consensus       517 a~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~---~~~~l~~  591 (780)
T 2z6g_A          517 AL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH---NRIVIRG  591 (780)
T ss_dssp             HS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHH---HHHHHHH
T ss_pred             hc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChh---hHHHHHH
Confidence            75  22222233  35788888888765433                      44556666665543110   00111  


Q ss_pred             HHHHHhhhhcccCCChHHHHHHHHHHHHHHH------HcChhhHHHhHHHHhccccccchH
Q psy10471        223 THLLNYVWPNIFETSPHLVQAFMDAVEGLRV------ALGPVRILQYVLQGLFHPARKVRD  277 (318)
Q Consensus       223 ~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~------alG~~~~~~~vl~~l~~~a~~~r~  277 (318)
                      ...++.+...+.+.++.++..+..++..++.      .+......+.+...+-|++..+|.
T Consensus       592 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~  652 (780)
T 2z6g_A          592 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVAT  652 (780)
T ss_dssp             TCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            1123444566677889999999988887752      122222344555555555544433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=98.83  E-value=3.3e-08  Score=84.45  Aligned_cols=175  Identities=18%  Similarity=0.128  Sum_probs=127.8

Q ss_pred             HHHHhhhchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------ccc
Q psy10471         76 LLELLKAHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFT  141 (318)
Q Consensus        76 Ll~~L~d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~  141 (318)
                      |..+|++++..+|..|+++++.++..-...       ..++.|++.|++++...|..++.+++.++....       ...
T Consensus        17 l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g   96 (210)
T 4db6_A           17 MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG   96 (210)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence            446668888999999999999998532222       368889999998777888888888887763211       135


Q ss_pred             chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh
Q psy10471        142 VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED  220 (318)
Q Consensus       142 vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~  220 (318)
                      ++|.+++.+++++..++..++.++..+...-.......+ ...+|.+.+++++.+..+|..++.++..++....  ....
T Consensus        97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~--~~~~  174 (210)
T 4db6_A           97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN--EQKQ  174 (210)
T ss_dssp             CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH--HHHH
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc--HHHH
Confidence            899999999999999999999999988753111111222 4588999999999999999999999999876421  1111


Q ss_pred             HHH--HHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        221 ALT--HLLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       221 ~i~--hll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      .+.  ..++.+...+.++++++|..+..++..++
T Consensus       175 ~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          175 AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            110  13344455556688999999999998875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=98.81  E-value=2.7e-07  Score=89.43  Aligned_cols=246  Identities=12%  Similarity=0.042  Sum_probs=165.3

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH--
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP--  104 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp--  104 (318)
                      ...+|.+..+++++++.+|..|+.+|+.++.........-.-...+..|++.|++ ++..+|+.|..++..++..-.+  
T Consensus        16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~   95 (529)
T 1jdh_A           16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLL   95 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred             HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHH
Confidence            3468888899999999999999999999996432100000112355567777776 4678999999999998754221  


Q ss_pred             ----HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Q psy10471        105 ----HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIG  173 (318)
Q Consensus       105 ----~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg  173 (318)
                          ...++.|++.|++++...|..++.++..++....       ...++|.|++.+++++..++..++.++..+... .
T Consensus        96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~-~  174 (529)
T 1jdh_A           96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-N  174 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC-C
Confidence                1368889999998777788888888887764321       136899999999998888888888888766531 1


Q ss_pred             cccccch--hhhHHHHHHHHhcCCH-HHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHHH
Q psy10471        174 EMGKDYI--YAVTPLLEDALMDRDL-VHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDAV  248 (318)
Q Consensus       174 ~~~~~yl--~~iiP~l~~~l~~~~~-~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~i  248 (318)
                      ...+.-+  ...+|.+.+++++.+. ..+..++.++..++..-   ...+.+.  ..++.+.+.+.+.+++++..++.++
T Consensus       175 ~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L  251 (529)
T 1jdh_A          175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS---SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL  251 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTST---THHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCc---ccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHH
Confidence            1112112  2467888888887664 45556677776665321   1111111  2455556666778899999999999


Q ss_pred             HHHHHHcCh----hhHHHhHHHHhccccccchH
Q psy10471        249 EGLRVALGP----VRILQYVLQGLFHPARKVRD  277 (318)
Q Consensus       249 ~~i~~alG~----~~~~~~vl~~l~~~a~~~r~  277 (318)
                      ..++..-..    ....|.++..+.+....++.
T Consensus       252 ~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~  284 (529)
T 1jdh_A          252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT  284 (529)
T ss_dssp             HHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHH
Confidence            988865432    34667777776655555555

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=98.81  E-value=8.5e-08  Score=96.42  Aligned_cols=244  Identities=13%  Similarity=0.036  Sum_probs=168.1

Q ss_pred             hhhhHHHHHHHHHHHhccCc-CCChHhHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh
Q psy10471          4 DKNLGIKIVQQIAILMGCAI-LPHLKNLVEIIEHGLVDE-QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~-~P~l~~l~~~l~~~l~d~-~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      -|..++.+|+.|+.-..+.. .-.....++.++..|++. ++.+|+.|+.+|..++..........+ ...+..|+++|+
T Consensus        30 vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~  108 (644)
T 2z6h_A           30 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFK-SGGIPALVKMLG  108 (644)
T ss_dssp             HHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHT-TTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHH-cCCHHHHHHHHh
Confidence            46788889999987322110 001236778888888764 799999999999998863211000111 124556778889


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc-------CcccchHHHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC-------SPFTVLPALM  147 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~-------~p~~vip~L~  147 (318)
                      +++..+|..|+++++.++..-.+.       ..++.|++.|+.++.+.+..++.++..++...       .....+|.|+
T Consensus       109 ~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv  188 (644)
T 2z6h_A          109 SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV  188 (644)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHH
Confidence            988899999999999998754322       35788999998766667777777777665321       1236799999


Q ss_pred             HHhcCCcc-hHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH
Q psy10471        148 NEYRVPEL-NVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH  224 (318)
Q Consensus       148 ~~~~d~~~-~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h  224 (318)
                      +.+++++. ..+..++.++..+..  ....+.++  ...+|.+..++.+.+..+|+.++.++..++.....   .+....
T Consensus       189 ~lL~~~~~~~~~~~a~~~L~nLs~--~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~  263 (644)
T 2z6h_A          189 NIMRTYTYEKLLWTTSRVLKVLSV--CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEG  263 (644)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHTT--CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHH
T ss_pred             HHHHcCChHHHHHHHHHHHHHHhc--CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh---hhhhhh
Confidence            99988753 445666777666653  22334444  34789999999999999999999999999865422   122234


Q ss_pred             HHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        225 LLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       225 ll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      .++.++..+.++++++|..+..++..++.
T Consensus       264 ~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~  292 (644)
T 2z6h_A          264 LLGTLVQLLGSDDINVVTCAAGILSNLTC  292 (644)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            55555666677889999999888887755

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=98.79  E-value=1.1e-07  Score=97.93  Aligned_cols=222  Identities=14%  Similarity=0.070  Sum_probs=157.0

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---  105 (318)
                      ..+|.+..+++.+++.+|+.|+++|+.+|.... ....--=...+..|+++|++..+..|+.|.++++.++....|.   
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~  573 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSF  573 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence            468899999999999999999999999995321 1110000124455667778877889999999999998765553   


Q ss_pred             ------HHHHHHHHhhcccch-hhHHHHHHHHHHHHhhc-------CcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        106 ------DVLATLLNNLKVQER-QNRVCTTVAIAIVAETC-------SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       106 ------~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~~-------~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                            ..++.|+..|..+.. ..+..+..|+..++...       .-...+|.|.+.+.+++..+++.++.++..++.+
T Consensus       574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~  653 (810)
T 3now_A          574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS  653 (810)
T ss_dssp             TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred             cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence                  246778888874322 33445666666655321       1125789999999999999999999999998753


Q ss_pred             Hccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHH
Q psy10471        172 IGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDA  247 (318)
Q Consensus       172 lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~  247 (318)
                      -. ....+.  ...+|.+..++...+..+|+.++++++.++.+... .....+.  ..++.+...+.+.+.+++..++.+
T Consensus       654 ~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~-~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          654 ED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK-CCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             HH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHH-HHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             hH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence            21 222333  35889999999999999999999999999874210 0112221  244455555667899999999999


Q ss_pred             HHHHHH
Q psy10471        248 VEGLRV  253 (318)
Q Consensus       248 i~~i~~  253 (318)
                      +..+..
T Consensus       732 L~NL~~  737 (810)
T 3now_A          732 ILNMIN  737 (810)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999876

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.78  E-value=2.5e-07  Score=86.73  Aligned_cols=248  Identities=10%  Similarity=0.057  Sum_probs=162.3

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhcC----------C-CCHHHHHHHHHHHHHHHhhCCCCCC-hhh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGLV----------D-EQQKVQENCIDLVGRIADRGPEYVS-ARE   68 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l~----------d-~~~~vR~aa~~~LG~la~~~~~~i~-~~~   68 (318)
                      +.++.++++|+.++.  .+..+..+-  ..++.++.+|.          + .++.+|+.|+++|..+|....+.-. ...
T Consensus        47 ~~~~~A~~aL~nls~--d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GTHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456678888888876  223333332  24455555552          1 3478999999999999965432100 111


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhh-cccchhhHHHHHHHHHHHHhhcC-
Q psy10471         69 WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNL-KVQERQNRVCTTVAIAIVAETCS-  138 (318)
Q Consensus        69 ~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~L-k~~~~~~R~~~~~ai~~i~~~~~-  138 (318)
                      .-..+..|+++|++++..+|..|.++++.++..-++.        ..++.|++.| +..+...+..++.++..++..+. 
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~  204 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE  204 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence            2345667888889888899999999999998532332        2477888875 44444555666667766553221 


Q ss_pred             -------cccchHHHHHHhcCCcc----hHHHHHHHHHHHHHHHH--ccccccch--hhhHHHHHHHHhcCCHHHHHHHH
Q psy10471        139 -------PFTVLPALMNEYRVPEL----NVQNGVLKALSFLFEYI--GEMGKDYI--YAVTPLLEDALMDRDLVHRQTAC  203 (318)
Q Consensus       139 -------p~~vip~L~~~~~d~~~----~v~~~vl~al~~i~~~l--g~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~  203 (318)
                             -...+|.|.+.++.++.    +++..++.++.++...+  +...+..+  ...+|.+.+++++.+..+++.++
T Consensus       205 nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~  284 (354)
T 3nmw_A          205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNAC  284 (354)
T ss_dssp             HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHH
Confidence                   13689999999987654    47877888888777531  22222223  34789999999999999999999


Q ss_pred             HHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        204 ATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       204 ~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      .++..++..-.  .....+..  .++.+...+...++.++..+..++..++..
T Consensus       285 ~aL~nLa~~~~--~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          285 GTLWNLSARNP--KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHHTSSCH--HHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCH--HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            99988864211  11112211  345555666667888999999999988765

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.77  E-value=5e-08  Score=103.56  Aligned_cols=187  Identities=11%  Similarity=0.074  Sum_probs=125.5

Q ss_pred             chhhhHHHHHHHHHHHhccC-cCCChHhHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q psy10471          3 SDKNLGIKIVQQIAILMGCA-ILPHLKNLVEIIEHGLV-----DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFEL   76 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~-~~P~l~~l~~~l~~~l~-----d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L   76 (318)
                      ++|++++.++|.+|...+.. -.++++++++.+.....     |++|.||..+++++|+++++...  .++.+.+++..+
T Consensus       468 ~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~--~~~~l~~vl~~l  545 (1049)
T 3m1i_C          468 HNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA--HWNFLRTVILKL  545 (1049)
T ss_dssp             HHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence            46889999999887533332 23557888888766442     45678887899999999986443  256777888888


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHhhhCHH--------------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc---
Q psy10471         77 LELLKAHKKAIRRATVNTFGYIAKAIGPH--------------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP---  139 (318)
Q Consensus        77 l~~L~d~~~~vR~~av~~lg~la~~igp~--------------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p---  139 (318)
                      ++.+.++++.||..|..+|..+++.++..              .++..+...+..-+.+.+..+.++++.+....++   
T Consensus       546 l~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~  625 (1049)
T 3m1i_C          546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAE  625 (1049)
T ss_dssp             HHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHH
Confidence            88898888999999999999999887632              2333333333322334456778898877654432   


Q ss_pred             ---c--cchHHHHHHhcC--------C----cch-HH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471        140 ---F--TVLPALMNEYRV--------P----ELN-VQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL  191 (318)
Q Consensus       140 ---~--~vip~L~~~~~d--------~----~~~-v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l  191 (318)
                         +  .+++.+.+.+..        +    +.+ +.  ..+++++..+++++|..+.+|+..+.+.+.+++
T Consensus       626 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~  697 (1049)
T 3m1i_C          626 RNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY  697 (1049)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence               2  455555443321        1    111 11  456788889999999888888876666555544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.77  E-value=7.6e-07  Score=89.50  Aligned_cols=246  Identities=15%  Similarity=0.162  Sum_probs=158.5

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhc--CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGL--VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l--~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      |..|+++++.+..      .-..+.++|.+...+  .|.+|.||+.|+.++..+....++.+....|.+.+.   ++|.|
T Consensus       128 r~lALr~L~~i~~------~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~---~lL~d  198 (621)
T 2vgl_A          128 MGLALHCIANVGS------REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVV---HLLND  198 (621)
T ss_dssp             HHHHHHHHHHHCC------HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHH---HHTTC
T ss_pred             HHHHHHHhhccCC------HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHH---HHhCC
Confidence            5577777777744      225567888888888  999999999999999999998776653347888877   55588


Q ss_pred             chHHHHHHHHHHHHHHHhhhCHH---HHHHHHH--------------------------------Hhh---c-ccchhhH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGPH---DVLATLL--------------------------------NNL---K-VQERQNR  123 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp~---~~l~~Ll--------------------------------~~L---k-~~~~~~R  123 (318)
                      +++.|+.+|+..++.++.. .|.   .+++.++                                +.|   . .++...+
T Consensus       199 ~d~~V~~~a~~~l~~i~~~-~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~  277 (621)
T 2vgl_A          199 QHLGVVTAATSLITTLAQK-NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVR  277 (621)
T ss_dssp             SCHHHHHHHHHHHHHHHHH-CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHH
T ss_pred             CCccHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHH
Confidence            8889999999999888753 221   0111111                                111   0 0111111


Q ss_pred             H-----------------------------H-HHHHHHHH-HhhcCc---ccchHHHHHHhcCCcchHHHHHHHHHHHHH
Q psy10471        124 V-----------------------------C-TTVAIAIV-AETCSP---FTVLPALMNEYRVPELNVQNGVLKALSFLF  169 (318)
Q Consensus       124 ~-----------------------------~-~~~ai~~i-~~~~~p---~~vip~L~~~~~d~~~~v~~~vl~al~~i~  169 (318)
                      .                             + +..++..+ .....|   ..++..|..-+..++++++-.++.++..+.
T Consensus       278 ~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~  357 (621)
T 2vgl_A          278 GRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA  357 (621)
T ss_dssp             HHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            0                             0 01111111 111111   135556666667788899988999888887


Q ss_pred             HHHccccccchhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHH
Q psy10471        170 EYIGEMGKDYIYAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV  248 (318)
Q Consensus       170 ~~lg~~~~~yl~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i  248 (318)
                      ..-+.  .+++....+.+..+++ +.|..+|..+.+++..++..-   ..+..+..++.|+    .+.+.+++..++.+|
T Consensus       358 ~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~---Nv~~Iv~eL~~yl----~~~d~~~~~~~v~~I  428 (621)
T 2vgl_A          358 SSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS---NAQQIVAEMLSYL----ETADYSIREEIVLKV  428 (621)
T ss_dssp             TCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHH----HHCCHHHHHHHHHHH
T ss_pred             hccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh---hHHHHHHHHHHHH----HhcCHHHHHHHHHHH
Confidence            54321  1344555677788888 999999999999987775332   2345555666664    336789999999999


Q ss_pred             HHHHHHcChh--hHHHhHHHHhc
Q psy10471        249 EGLRVALGPV--RILQYVLQGLF  269 (318)
Q Consensus       249 ~~i~~alG~~--~~~~~vl~~l~  269 (318)
                      +.++.-..++  .+...++..+-
T Consensus       429 ~~la~k~~~~~~~~v~~Ll~ll~  451 (621)
T 2vgl_A          429 AILAEKYAVDYTWYVDTILNLIR  451 (621)
T ss_dssp             HHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHH
Confidence            9998877543  36666666653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.76  E-value=1.4e-07  Score=99.59  Aligned_cols=250  Identities=10%  Similarity=-0.025  Sum_probs=165.9

Q ss_pred             chhhhHHHHHHHHHHHhcc------CcCCChHhHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH
Q psy10471          3 SDKNLGIKIVQQIAILMGC------AILPHLKNLVEIIEHGLV-----DEQQKVQENCIDLVGRIADRGPEYVSAREWMR   71 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~------~~~P~l~~l~~~l~~~l~-----d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~   71 (318)
                      +++++++-+++.+|+....      ...++++.+++.+..+++     +.||.||.++++++|+++++....  ++.+.+
T Consensus       458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~--~~~l~~  535 (980)
T 3ibv_A          458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYE--SAAIPA  535 (980)
T ss_dssp             HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTC--CTTHHH
T ss_pred             HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcC--chhHHH
Confidence            4688999999999995432      234778888888887765     889999999999999999987642  456677


Q ss_pred             HHHHHHH--HhhhchHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhccc-------c--------------hhh
Q psy10471         72 ICFELLE--LLKAHKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQ-------E--------------RQN  122 (318)
Q Consensus        72 il~~Ll~--~L~d~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~-------~--------------~~~  122 (318)
                      ++..+++  -+.+++++||.+|..+|..+.+.+.+    +  .++..+-..|...       +              -..
T Consensus       536 ~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~  615 (980)
T 3ibv_A          536 LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNS  615 (980)
T ss_dssp             HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHH
T ss_pred             HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchH
Confidence            7777776  66677788999999999998887664    3  3444444444311       0              013


Q ss_pred             HHHHHHHHHHHHhhcC-c--------ccchHHHHHHhcC----C-c--ch-HH-HHHHHHHHHHHHHHccc------ccc
Q psy10471        123 RVCTTVAIAIVAETCS-P--------FTVLPALMNEYRV----P-E--LN-VQ-NGVLKALSFLFEYIGEM------GKD  178 (318)
Q Consensus       123 R~~~~~ai~~i~~~~~-p--------~~vip~L~~~~~d----~-~--~~-v~-~~vl~al~~i~~~lg~~------~~~  178 (318)
                      +.-..+|+|.+....+ |        -.+++++++.+..    . .  .+ .+ ..++.+++.+.+++...      +..
T Consensus       616 ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~  695 (980)
T 3ibv_A          616 QLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLA  695 (980)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHH
Confidence            5667888987664433 2        1567776665531    1 1  11 12 34677778888765332      233


Q ss_pred             chhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        179 YIYAVTPLLEDALM--DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       179 yl~~iiP~l~~~l~--~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                      .+.++++.+..++.  ..+..+|..+...+.++...++ .+....+..+...++..   -+.+-....+..++.+..-.|
T Consensus       696 ~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg-~~~~p~lp~~i~~ll~~---~~~~e~~~fL~l~~qli~~f~  771 (980)
T 3ibv_A          696 SFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVG-PDMLPKVPQLISILLNS---IDMNELVDVLSFISQLIHIYK  771 (980)
T ss_dssp             HHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTH-HHHTTTHHHHHHHHHHH---CCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc-HhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHH
Confidence            44567777777776  5678999999999999988774 11122333333333321   123335568899999999999


Q ss_pred             hh
Q psy10471        257 PV  258 (318)
Q Consensus       257 ~~  258 (318)
                      .+
T Consensus       772 ~~  773 (980)
T 3ibv_A          772 DN  773 (980)
T ss_dssp             TT
T ss_pred             HH
Confidence            86

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.73  E-value=7.2e-07  Score=80.14  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=142.6

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHHHhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADR---GPEYVSAREWMRICFELLELLK   81 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~---~~~~i~~~~~~~il~~Ll~~L~   81 (318)
                      +..|+..|.+............++-+++.+.-.+-|.|+.|-..++..|..+.+.   .++.+...|-..++..|++-+-
T Consensus        63 ~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlG  142 (266)
T 2of3_A           63 HLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTG  142 (266)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhC
Confidence            3356666655444322234444555566555455688999999999999988643   2344444555667777889898


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC--cccch---HHHHHHhcCCcch
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--PFTVL---PALMNEYRVPELN  156 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~--p~~vi---p~L~~~~~d~~~~  156 (318)
                      |++..+|..+-..+-.+.+..+|..+.+.+++.++...-+.|......++.+-+.+|  |...+   |.+.+.+.|++.+
T Consensus       143 d~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~  222 (266)
T 2of3_A          143 EAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVN  222 (266)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHH
T ss_pred             CChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHH
Confidence            999999999888888888888899999999999987776888888888876555555  45788   9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh
Q psy10471        157 VQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM  192 (318)
Q Consensus       157 v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~  192 (318)
                      ||+++++++..+++..|+.+..|+..+-|.-...+.
T Consensus       223 VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~  258 (266)
T 2of3_A          223 VRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVE  258 (266)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHH
Confidence            999999999999999999888888766666555553

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.71  E-value=1.2e-06  Score=88.06  Aligned_cols=269  Identities=10%  Similarity=0.065  Sum_probs=175.3

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHhhhCH
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-AHKKAIRRATVNTFGYIAKAIGP  104 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-d~~~~vR~~av~~lg~la~~igp  104 (318)
                      .+...+..+...+.+.++.+|..|+.+|..++...+.   ...+.+....++..|+ |++.+||+.+++.+..++..-.-
T Consensus       326 ~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~---~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv  402 (621)
T 2vgl_A          326 LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS---HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNA  402 (621)
T ss_dssp             HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT---HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhH
Confidence            3556677778888888999999999999999986542   1122222233456678 88889999999999888764333


Q ss_pred             HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhh
Q psy10471        105 HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYA  182 (318)
Q Consensus       105 ~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~  182 (318)
                      ..++..|+..++..+...|..++.+|+.+++++.+.  ..+..+++.+++....+...++..+..+... .+....|   
T Consensus       403 ~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~-~~~~~~~---  478 (621)
T 2vgl_A          403 QQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVIN-RDDVQGY---  478 (621)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGG-GCSCHHH---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhC-ChhHHHH---
Confidence            457777888887767788999999999999888763  6788888888776555555565555555432 1223333   


Q ss_pred             hHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhH
Q psy10471        183 VTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRI  260 (318)
Q Consensus       183 iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~  260 (318)
                      .+..+.+.+.++.  ..+-+.+++.+|.-+..+....... -..++.++.+...++++.+|..++.++-.+....+.  .
T Consensus       479 ~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~-p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~  555 (621)
T 2vgl_A          479 AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSS-PLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--V  555 (621)
T ss_dssp             HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--G
T ss_pred             HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--H
Confidence            3455666676554  4566677799988877664322110 112233444555678999999999999999776532  2


Q ss_pred             HHhHHHHh----c--cccccchH---HHHHHHHHhhccccccccccCCCCCcc
Q psy10471        261 LQYVLQGL----F--HPARKVRD---VYWKIYNSLYIGGQDALISAYPRIQND  304 (318)
Q Consensus       261 ~~~vl~~l----~--~~a~~~r~---~~w~i~~~~~~~~~~~~~p~~p~~~~~  304 (318)
                      .+.+...+    .  +++-.+|+   .||++++.-.....+.+..-.|.+++.
T Consensus       556 ~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~~  608 (621)
T 2vgl_A          556 KATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPER  608 (621)
T ss_dssp             HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCCc
Confidence            33343333    2  34445666   888888543222233444446666544

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.67  E-value=3.4e-07  Score=96.89  Aligned_cols=215  Identities=11%  Similarity=0.064  Sum_probs=138.6

Q ss_pred             HHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhh-----h
Q psy10471         10 KIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLK-----A   82 (318)
Q Consensus        10 ~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~-----d   82 (318)
                      .+|+-++.+.|.++   ++.+++.+...+.+  .++..|+|++.++|.++++..+....+.+..++..|++++.     |
T Consensus       435 d~L~~l~~l~~~~~---~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d  511 (1023)
T 4hat_C          435 EVLVYLTHLNVIDT---EEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD  511 (1023)
T ss_dssp             HHHHHHHHHCHHHH---HHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHhccCHHHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc
Confidence            45666666555332   22233444433443  57999999999999999855432112334445555666665     4


Q ss_pred             chHHHHHHHHHHHHHHHhhhC--HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIG--PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNG  160 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~ig--p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~  160 (318)
                      ++..+|..+++++|+.++-+.  |. .++                               .++..++.-+.++.+.++.+
T Consensus       512 ~k~~v~~t~~~~lGry~~wl~~~~~-~L~-------------------------------~vl~~L~~~l~~~~~~v~~~  559 (1023)
T 4hat_C          512 NKAVVASDIMYVVGQYPRFLKAHWN-FLR-------------------------------TVILKLFEFMHETHEGVQDM  559 (1023)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHCHH-HHH-------------------------------HHHHHHHHHTTCSCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHH-HHH-------------------------------HHHHHHHHHhhcCCHHHHHH
Confidence            556688889999999887442  21 111                               23444667777777889999


Q ss_pred             HHHHHHHHHHHHcccc--------ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHHhhhh
Q psy10471        161 VLKALSFLFEYIGEMG--------KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLNYVWP  231 (318)
Q Consensus       161 vl~al~~i~~~lg~~~--------~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~~l~~  231 (318)
                      ++.++.++++..+..+        .+|+++++..+..+..+-+..-+..+.++++.++..+.... ....+.++++.+..
T Consensus       560 A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~  639 (1023)
T 4hat_C          560 ACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM  639 (1023)
T ss_dssp             HHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH
Confidence            9999999998777655        46999999999998877777777888888888877764221 23344444433322


Q ss_pred             c---ccC-----C----C---hHHHHHHHHHHHHHHHHcChhh
Q psy10471        232 N---IFE-----T----S---PHLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       232 ~---i~d-----~----~---~~vr~~ii~~i~~i~~alG~~~  259 (318)
                      .   +.+     +    +   ..-...++.+..+++.++|..+
T Consensus       640 ~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f  682 (1023)
T 4hat_C          640 AWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF  682 (1023)
T ss_dssp             HHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence            2   111     0    1   1233467788888999999865

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.66  E-value=3.6e-06  Score=87.37  Aligned_cols=259  Identities=13%  Similarity=0.107  Sum_probs=159.6

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCC--------HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQ--------QKVQENCIDLVGRIADRGPEYVSAREWMRICFEL   76 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~--------~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L   76 (318)
                      |+-|+-.+|-+..  |..     ++.+..+.+.+.+.+        +.+|..|+..||.+.-+++..    +   ++..|
T Consensus       412 k~GAllaLGli~a--g~~-----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----e---v~e~L  477 (963)
T 4ady_A          412 KGGSLYGLGLIYA--GFG-----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI----E---VYEAL  477 (963)
T ss_dssp             HHHHHHHHHHHTT--TTT-----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----H---HHHHH
T ss_pred             HHHHHHHHHHhcC--CCc-----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH----H---HHHHH
Confidence            5666666666655  322     246677777776654        889999999999987665531    2   33445


Q ss_pred             HHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc-CCc
Q psy10471         77 LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPE  154 (318)
Q Consensus        77 l~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~-d~~  154 (318)
                      .+++.+++..+|..|.-++|-+--..|..+++..|+..+. +++...|+..+.++|.++  ++.-...+.+++.+. +.+
T Consensus       478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~~L~~~~d  555 (963)
T 4ady_A          478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQELADDLITKMLASDE  555 (963)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHHHHHCSC
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChHHHHHHHHHHHhCCC
Confidence            5666776566788888899977544566677788877765 334467888888887653  222356677777764 566


Q ss_pred             chHHHHHHHHHHHHHHHHccccccchhhhHH-HHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcc
Q psy10471        155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTP-LLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNI  233 (318)
Q Consensus       155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP-~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i  233 (318)
                      +.+|.+.+-+++..+-+.|.      +..+. .+..+..+.+..+|+.|...++.++.+     .++.+..++..+..  
T Consensus       556 p~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g-----~~e~v~rlv~~L~~--  622 (963)
T 4ady_A          556 SLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR-----DYTTVPRIVQLLSK--  622 (963)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS-----SCSSHHHHTTTGGG--
T ss_pred             HHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC-----CHHHHHHHHHHHHh--
Confidence            77777666665544444443      22223 444445677788888877777655322     22333444333333  


Q ss_pred             cCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhccccccchHHHHHHHHHhhcccccc
Q psy10471        234 FETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDA  293 (318)
Q Consensus       234 ~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~  293 (318)
                       +.++++|..+.-+++.++..-|.......+.+..-+....||..-.-.+..+..+..++
T Consensus       623 -~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna  681 (963)
T 4ady_A          623 -SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK  681 (963)
T ss_dssp             -CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTT
T ss_pred             -cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccc
Confidence             36788888888888887755555455553333333333456665555666666665555

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.63  E-value=4e-09  Score=84.41  Aligned_cols=125  Identities=16%  Similarity=0.097  Sum_probs=88.9

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI  102 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i  102 (318)
                      -..+-++-.+.+...|+|+++.+|..|+++||++.+.        .    +..|++.|+|+++.+|..|++++|.++.  
T Consensus         6 ~~~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--   71 (131)
T 1te4_A            6 HHHHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE--------A----FEPLLESLSNEDWRIRGAAAWIIGNFQD--   71 (131)
T ss_dssp             ---------------CCSSCCCSSSSCCSSTTSCSST--------T----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred             ccccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------H----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence            3444556677788889999999999999999876431        1    2345677899889999999999998653  


Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHH
Q psy10471        103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSF  167 (318)
Q Consensus       103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~  167 (318)
                        ...++.|...|++++..+|..++.+++.++.    -..+|.|...++|++..++..+..++..
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              4568888888888888899999999987753    2578899999999999999888887653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.62  E-value=1.1e-06  Score=85.23  Aligned_cols=245  Identities=11%  Similarity=0.060  Sum_probs=158.6

Q ss_pred             hhHHHHHHHHHHHhccCcCCChH--hHHHHHHhhcC----------C-CCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHH
Q psy10471          6 NLGIKIVQQIAILMGCAILPHLK--NLVEIIEHGLV----------D-EQQKVQENCIDLVGRIADRGPEYVS-AREWMR   71 (318)
Q Consensus         6 ~~~l~~i~~La~~~g~~~~P~l~--~l~~~l~~~l~----------d-~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~   71 (318)
                      +.++.+|+.++.  ++..+..+-  ..++.++.++.          + .++.+++.|+++|..+|....+.-. ....-.
T Consensus       166 ~qAv~aL~nls~--~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          166 CPAVCVLMKLSF--DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             HHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHhcC--CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            378888887754  222222221  24444554442          2 3478999999999999975432100 111234


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhh-cccchhhHHHHHHHHHHHHhhcC----
Q psy10471         72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNL-KVQERQNRVCTTVAIAIVAETCS----  138 (318)
Q Consensus        72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~L-k~~~~~~R~~~~~ai~~i~~~~~----  138 (318)
                      .+..|+++|++++..+|..|+++++.++..-++.        ..++.|++.| +..+...+..++.++..++..+.    
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            4667788889888899999999999998532332        2477888875 44444566666677765553221    


Q ss_pred             ----cccchHHHHHHhcCCcc----hHHHHHHHHHHHHHHHH--ccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHH
Q psy10471        139 ----PFTVLPALMNEYRVPEL----NVQNGVLKALSFLFEYI--GEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATI  206 (318)
Q Consensus       139 ----p~~vip~L~~~~~d~~~----~v~~~vl~al~~i~~~l--g~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i  206 (318)
                          -...+|.|.+.++.+..    +++..++.++..+...+  +.....-+  ...+|.+..++++.+..+++.++.++
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence                13689999999987654    37887888888877531  22222222  34789999999999999999999999


Q ss_pred             HHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        207 KHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       207 ~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      ..++..-.  .....+..  ..+.+...+...++.++..+..++..++..
T Consensus       404 ~nLa~~~~--~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          404 WNLSARNP--KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHSSCH--HHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCH--HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            98874311  11112211  345555656667888999999998888653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=98.62  E-value=7.4e-07  Score=81.50  Aligned_cols=197  Identities=11%  Similarity=0.082  Sum_probs=134.6

Q ss_pred             CChHhHHHHHHhhcCCCCH------------HHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHH-HhhhchHHHHH
Q psy10471         25 PHLKNLVEIIEHGLVDEQQ------------KVQENCIDLVGRIADRGPEYVSAREW--MRICFELLE-LLKAHKKAIRR   89 (318)
Q Consensus        25 P~l~~l~~~l~~~l~d~~~------------~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~-~L~d~~~~vR~   89 (318)
                      |--.+.|+..+..|+|+.|            .-|..|+..|.++++....   ...+  ...+..|++ .|+++++.+|.
T Consensus        24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dn---a~~~~~~G~l~~Lv~~lL~s~~~~vr~  100 (296)
T 1xqr_A           24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDN---AADFCQLSGMHLLVGRYLEAGAAGLRW  100 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHH---HHHHHHTTHHHHHHHTTTTCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhh---HHHHHHcCCHHHHHHHHHcCCCHHHHH
Confidence            6667889999999988632            3477778888888763221   1111  123344667 78888899999


Q ss_pred             HHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc-CCcchHHHHHHHHHHHH
Q psy10471         90 ATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPELNVQNGVLKALSFL  168 (318)
Q Consensus        90 ~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~-d~~~~v~~~vl~al~~i  168 (318)
                      .|++++|.++. -+|. .               |..+.           ...++|.|++.++ +++.++++.++.+++.+
T Consensus       101 ~Aa~~Lg~ia~-~n~~-~---------------~~~vv-----------~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl  152 (296)
T 1xqr_A          101 RAAQLIGTCSQ-NVAA-I---------------QEQVL-----------GLGALRKLLRLLDRDACDTVRVKALFAISCL  152 (296)
T ss_dssp             HHHHHHHHHHT-TCHH-H---------------HHHHH-----------HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCHH-H---------------HHHHH-----------HCCCHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            99999999985 2332 0               00110           0146778888887 45788999999999998


Q ss_pred             HHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHH
Q psy10471        169 FEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFM  245 (318)
Q Consensus       169 ~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii  245 (318)
                      +..-......+. ...+|.+..++.+.+..+|+.++.+++.++..-.  .....+..  ..+.+...+..++++++..++
T Consensus       153 ~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~--~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al  230 (296)
T 1xqr_A          153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP--EHKGTLCSMGMVQQLVALVRTEHSPFHEHVL  230 (296)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHH
T ss_pred             HcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh--HHHHHHHHcCCHHHHHHHHcCCChhHHHHHH
Confidence            864222222344 3588999999999999999999999999987521  11111111  334445555667889999999


Q ss_pred             HHHHHHHHH
Q psy10471        246 DAVEGLRVA  254 (318)
Q Consensus       246 ~~i~~i~~a  254 (318)
                      .+++.++..
T Consensus       231 ~aL~~l~~~  239 (296)
T 1xqr_A          231 GALCSLVTD  239 (296)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999876

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.57  E-value=3.8e-06  Score=75.55  Aligned_cols=177  Identities=7%  Similarity=0.029  Sum_probs=130.6

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCC------C-hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH-
Q psy10471         34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYV------S-AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH-  105 (318)
Q Consensus        34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i------~-~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~-  105 (318)
                      +...|.+.+|+.|..|+..+..+.+......      . ...+.+.+.   ..++|.+..+...++.++..+++..++. 
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lk---k~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFA---QYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHH---HHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            4578899999999999999998887544211      1 223344444   6668999999999999999998877642 


Q ss_pred             -----------HHHHHHHHh-hcccchhhHHHHHHHHHHHHhhcCc-ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHH
Q psy10471        106 -----------DVLATLLNN-LKVQERQNRVCTTVAIAIVAETCSP-FTVLPALMNEYRVPELNVQNGVLKALSFLFEYI  172 (318)
Q Consensus       106 -----------~~l~~Ll~~-Lk~~~~~~R~~~~~ai~~i~~~~~p-~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l  172 (318)
                                 .+++.|+.- |.+...+.|.....++..+.+.+++ ..++..+...+..-++.++...+..+..+++..
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                       234444432 4444446777777777666676665 467777777778888899999999999999988


Q ss_pred             cccc---ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        173 GEMG---KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       173 g~~~---~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      |...   ++.++.+++.+..++.++|+.+|..+..++..+-..+
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            8753   3466778888999999999999999999998886665

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.54  E-value=1.9e-05  Score=69.06  Aligned_cols=182  Identities=11%  Similarity=0.095  Sum_probs=145.7

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC--HH
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG--PH  105 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig--p~  105 (318)
                      ++.+..+.++|.|.++.++..|+.+|+.+-...+...+...+..++..+++.+++++.+|---|+++++.+-+...  |.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            3467778899999999999999999999999876655567788888888899999888888889999999988755  33


Q ss_pred             ---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchh
Q psy10471        106 ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIY  181 (318)
Q Consensus       106 ---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~  181 (318)
                         .+..+|.+..+.+..-.+-.++..++.+ ....+. .|+..+.+.+...++.++.+.+.++..+...-++  +..+.
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D--~~i~~  188 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD--SGHLT  188 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS--CCCGG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC--HHHHH
Confidence               5788888888855555677778877776 222233 6777788888888899999999999988765554  44566


Q ss_pred             hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        182 AVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       182 ~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                      .|.--+..++++.|+.++..+..++..+...
T Consensus       189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          189 LILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            7777788899999999999999999888655

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.52  E-value=2.9e-06  Score=88.04  Aligned_cols=202  Identities=14%  Similarity=0.161  Sum_probs=139.0

Q ss_pred             HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471         28 KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL-KAHKKAIRRATVNTFGYIAKAIGPHD  106 (318)
Q Consensus        28 ~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L-~d~~~~vR~~av~~lg~la~~igp~~  106 (318)
                      +++...+.+.+.|+++.+|+.|+.+||.+--+++..   .    ++..|+..+ .+.+..+||.+.-++|-+.  +|..+
T Consensus       471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~---~----ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e  541 (963)
T 4ady_A          471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP---E----AIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQE  541 (963)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH---H----HHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGG
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH---H----HHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChH
Confidence            478888888888888888999999999987666642   1    233333433 3456679999999999875  66566


Q ss_pred             HHHHHHHhhcc-cchhhHHHHHHHHHHHHhhcCcccchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccchhhhH
Q psy10471        107 VLATLLNNLKV-QERQNRVCTTVAIAIVAETCSPFTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT  184 (318)
Q Consensus       107 ~l~~Ll~~Lk~-~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii  184 (318)
                      ..+.+++.|+. ++...|+..+.+++.-.-.-+-..++..|+..+ .|++..+|++++-+++.|.-  |.      ++.+
T Consensus       542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~--g~------~e~v  613 (963)
T 4ady_A          542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLL--RD------YTTV  613 (963)
T ss_dssp             GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTS--SS------CSSH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhcc--CC------HHHH
Confidence            67777777774 344678887777654322222236677677765 57788899988888887643  32      1334


Q ss_pred             HHHHH-HHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        185 PLLED-ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       185 P~l~~-~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      |.+.. +..+.++.+|..++.+++.+..+   .+..+.+. .|..+   ..|.++.||+.++.+++-+..
T Consensus       614 ~rlv~~L~~~~d~~VR~gAalALGli~aG---n~~~~aid-~L~~L---~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          614 PRIVQLLSKSHNAHVRCGTAFALGIACAG---KGLQSAID-VLDPL---TKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             HHHTTTGGGCSCHHHHHHHHHHHHHHTSS---SCCHHHHH-HHHHH---HTCSSHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhccC---CCcHHHHH-HHHHH---ccCCCHHHHHHHHHHHHHHhc
Confidence            44444 44578899999999999877533   24445554 33333   467899999999988887754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.49  E-value=2.8e-06  Score=82.00  Aligned_cols=175  Identities=11%  Similarity=0.098  Sum_probs=117.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhH--HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW--MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---  105 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~--~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---  105 (318)
                      +|.++..|+.+++.+|..|+++|+.++....+.-  ..+  ...+..|+++|+++++.+++.|.+++..++..-.+.   
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~--~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK--QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHH--HHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHH--HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5667778888899999999999999996443211  011  123455678889888899999999999999632222   


Q ss_pred             ----HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcc------cchHHHHHHh--------cCC--------cchHH
Q psy10471        106 ----DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPF------TVLPALMNEY--------RVP--------ELNVQ  158 (318)
Q Consensus       106 ----~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~------~vip~L~~~~--------~d~--------~~~v~  158 (318)
                          -.++.|++.|+ ..+...+..++-++..++.. ...      ..+|.|++.+        +++        +.++.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence                23778999998 65667777788888777643 111      5889999988        332        23455


Q ss_pred             HHHHHHHHHHHHHHccccccchh---hhHHHHHHHHhc------CCHHHHHHHHHHHHHHh
Q psy10471        159 NGVLKALSFLFEYIGEMGKDYIY---AVTPLLEDALMD------RDLVHRQTACATIKHMA  210 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~~~~~yl~---~iiP~l~~~l~~------~~~~~R~~a~~~i~~la  210 (318)
                      +.++.++.+++..  ....+.+-   ..+|.+..++.+      .+...++.+...+..++
T Consensus       161 ~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs  219 (457)
T 1xm9_A          161 FNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS  219 (457)
T ss_dssp             HHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence            6888888888764  33334442   578888888864      34445555555555543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.47  E-value=3.7e-06  Score=89.14  Aligned_cols=218  Identities=11%  Similarity=0.069  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhHHHHHHhhcC--CCCHHHHHHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHHHh---
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNLVEIIEHGLV--DEQQKVQENCIDLVGRIADRGPEYVSARE-WMRICFELLELL---   80 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~--d~~~~vR~aa~~~LG~la~~~~~~i~~~~-~~~il~~Ll~~L---   80 (318)
                      .+-.++..++.+.|..+.+++-   +.+...++  +.+++.|++++.++|.+++...... .+. ...++..++.+.   
T Consensus       432 ~~~~~L~~l~~~~~~~~l~~v~---~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~-e~~~l~~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          432 SEREVLVYLTHLNVIDTEEIMI---SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHH---HHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHccCHHHHHHHHH---HHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchh-hHHHHHHHHHHHHHHHhhh
Confidence            4566888888776654444433   33333343  3579999999999999987544321 123 344444444432   


Q ss_pred             --hhchHHHHHHHHHHHHHHHhhhCHH-HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchH
Q psy10471         81 --KAHKKAIRRATVNTFGYIAKAIGPH-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV  157 (318)
Q Consensus        81 --~d~~~~vR~~av~~lg~la~~igp~-~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v  157 (318)
                        +++++.+|..+++++|+.++-+..+ +.+.                               .+++.++..+.++++.+
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-------------------------------~vl~~ll~~l~~~~~~V  556 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-------------------------------TVILKLFEFMHETHEGV  556 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-------------------------------HHHHHHHHHTTSSCHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-------------------------------HHHHHHHHHhcCCCHHH
Confidence              2345556667999999988644321 1111                               34555777778888899


Q ss_pred             HHHHHHHHHHHHHHHccccc--------cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC-CchhHHHHHHHh
Q psy10471        158 QNGVLKALSFLFEYIGEMGK--------DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF-GCEDALTHLLNY  228 (318)
Q Consensus       158 ~~~vl~al~~i~~~lg~~~~--------~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~-~~~~~i~hll~~  228 (318)
                      +..++.++..+++..+..+.        +|++.++..+..++..-+..-...+.++++.++...... .....+..+++.
T Consensus       557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~  636 (1049)
T 3m1i_C          557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL  636 (1049)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            99999999999988776654        999999999999888766666677777887777665310 112223332222


Q ss_pred             hh---hcccC---------CChH-HH--HHHHHHHHHHHHHcChhh
Q psy10471        229 VW---PNIFE---------TSPH-LV--QAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       229 l~---~~i~d---------~~~~-vr--~~ii~~i~~i~~alG~~~  259 (318)
                      +.   ..+.+         .+++ ++  ..++.++.+++.++|.++
T Consensus       637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f  682 (1049)
T 3m1i_C          637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADF  682 (1049)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            21   11110         0222 12  356778889999999765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.45  E-value=1.6e-05  Score=83.15  Aligned_cols=203  Identities=13%  Similarity=0.145  Sum_probs=145.6

Q ss_pred             hhHHHHHHHHHHHhcc--CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          6 NLGIKIVQQIAILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         6 ~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      +.|+.+++.|+...|.  .+.||+-+++|.++..+.|....||.+|-.++-.++....++. .+.   ++..|++.|++.
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-~~~---~~~~~~~~~~~~  145 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-IKA---LLPHLTNAIVET  145 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-HHH---HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-HHH---HHHHHHHHhccc
Confidence            6788899999976654  6889999999999999999999999999999999999877654 333   444566777775


Q ss_pred             hHH-HHHHHHHHHHHHHhhhCHH-------HHHHHHHHhhcccchhhHHHHHHHHHHHH---------------------
Q psy10471         84 KKA-IRRATVNTFGYIAKAIGPH-------DVLATLLNNLKVQERQNRVCTTVAIAIVA---------------------  134 (318)
Q Consensus        84 ~~~-vR~~av~~lg~la~~igp~-------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~---------------------  134 (318)
                      .+| .+..|++.++.+++.. |.       ++++.+-....|-...+......++..++                     
T Consensus       146 ~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~  224 (986)
T 2iw3_A          146 NKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD  224 (986)
T ss_dssp             CCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC
Confidence            455 8899999999999754 64       23333333332222212111111111111                     


Q ss_pred             -------------hhcC-----cc--cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc--ccccchhhhHHHHHHHHh
Q psy10471        135 -------------ETCS-----PF--TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE--MGKDYIYAVTPLLEDALM  192 (318)
Q Consensus       135 -------------~~~~-----p~--~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~--~~~~yl~~iiP~l~~~l~  192 (318)
                                   -+++     |+  .++|-|.+-+++.+..+++..+--+.+++|...+  ...+|+|.++|.++++..
T Consensus       225 p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~  304 (986)
T 2iw3_A          225 PTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFA  304 (986)
T ss_dssp             TTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTT
T ss_pred             hhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhh
Confidence                         0111     22  5778888888888888887777788899988766  578999999999999885


Q ss_pred             -cCCHHHHHHHHHHHHHHhhhh
Q psy10471        193 -DRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       193 -~~~~~~R~~a~~~i~~la~~~  213 (318)
                       ..+|..|.-+..++..|-...
T Consensus       305 ~~~~pe~r~~~~~a~~~l~~~~  326 (986)
T 2iw3_A          305 TIADPEAREVTLRALKTLRRVG  326 (986)
T ss_dssp             TCCSHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhh
Confidence             567999998888888885554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=98.44  E-value=3e-06  Score=79.40  Aligned_cols=205  Identities=11%  Similarity=0.125  Sum_probs=139.6

Q ss_pred             hhhHHHHHHHHHHHhccC-cCCCh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCA-ILPHL---KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLE   78 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~-~~P~l---~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~   78 (318)
                      |..+..+|..|+.  +.. .+.-+   ...+|.++.+|+++++.+|+.|+++|+.++....+.. ...+.  ..+..|++
T Consensus       101 q~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A          101 RRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS-KKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHTS--SCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHH-HHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHH-HHHHHHCCCHHHHHH
Confidence            3455566666664  322 22223   3568999999999999999999999999987522110 11111  23445666


Q ss_pred             Hh-hhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch----hhHHHHHHHHHHHHhh--cCc----
Q psy10471         79 LL-KAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER----QNRVCTTVAIAIVAET--CSP----  139 (318)
Q Consensus        79 ~L-~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~~--~~p----  139 (318)
                      +| ++.+..+++.|+.+++.++...+..        ..++.|++.|+..+.    ..+..++-++..++..  ..+    
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            54 4466788999999998888622221        247778888875432    2455555555555431  111    


Q ss_pred             ----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        140 ----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       140 ----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                          ...+|.|++.+++++.+++..++.++..+... ......++  ...+|.|.++++..+..+|+.++.++..++..-
T Consensus       258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence                35799999999999999999999999988631 12334444  357899999999999999999999999998764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=98.36  E-value=7.3e-06  Score=79.35  Aligned_cols=204  Identities=11%  Similarity=0.129  Sum_probs=139.8

Q ss_pred             hhhHHHHHHHHHHHhccC-cCCCh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGCA-ILPHL---KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLE   78 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~-~~P~l---~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~   78 (318)
                      +..+..+|..|+.  |.. -+..+   ...+|.++.+|++.++.+++.|+++|+.++....+.. ...+.  ..+..|++
T Consensus       217 ~~~Aa~aL~nLa~--~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~-k~~I~~~GaI~~LV~  293 (458)
T 3nmz_A          217 RRYAGMALTNLTF--GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS-KKTLREVGSVKALME  293 (458)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHH-HHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHH-HHHHHHcCCHHHHHH
Confidence            4456677777775  332 22222   4568999999999999999999999999986422110 11111  23455667


Q ss_pred             Hh-hhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccch----hhHHHHHHHHHHHHhh--cCc----
Q psy10471         79 LL-KAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQER----QNRVCTTVAIAIVAET--CSP----  139 (318)
Q Consensus        79 ~L-~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~----~~R~~~~~ai~~i~~~--~~p----  139 (318)
                      +| ++.+..+++.|+.+++.++...+..        ..++.|++.|+..+.    ..+..++-++..++..  ..+    
T Consensus       294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  373 (458)
T 3nmz_A          294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  373 (458)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence            54 4466788999999998888622211        247778888874432    2444455555554431  121    


Q ss_pred             ----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        140 ----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       140 ----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                          ...+|.|+..+++++.+++..++.++..+... ......++  ...+|.+.+++...+..+|+.++.++..++..
T Consensus       374 ~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          374 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence                25799999999999999999999999988732 23344555  35789999999999999999999999988765

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=98.36  E-value=5.3e-05  Score=73.00  Aligned_cols=270  Identities=9%  Similarity=0.036  Sum_probs=155.7

Q ss_pred             hhhHHHHHHHHHHHhc-cCcCCCh--HhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471          5 KNLGIKIVQQIAILMG-CAILPHL--KNLVEIIEHGLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         5 r~~~l~~i~~La~~~g-~~~~P~l--~~l~~~l~~~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      +..+..++..|+.  + ...+..+  ...+|.++.+|+ +.++.+++.|+++|+.+|.. .+ ....-....+..|+++|
T Consensus        61 ~~~A~~aL~nLa~--~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~-~~~~i~~g~i~~Lv~ll  136 (457)
T 1xm9_A           61 QQAAAGALRNLVF--RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DE-LKEELIADALPVLADRV  136 (457)
T ss_dssp             HHHHHHHHHHHHS--SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SS-THHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc--CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HH-hHHHHHhccHHHHHHHH
Confidence            3456667776665  2 1122222  134778888898 77899999999999999986 32 21111115566677777


Q ss_pred             h--------hc--------hHHHHHHHHHHHHHHHhhhCHH---------HHHHHHHHhhccc-------chhhHHHH--
Q psy10471         81 K--------AH--------KKAIRRATVNTFGYIAKAIGPH---------DVLATLLNNLKVQ-------ERQNRVCT--  126 (318)
Q Consensus        81 ~--------d~--------~~~vR~~av~~lg~la~~igp~---------~~l~~Ll~~Lk~~-------~~~~R~~~--  126 (318)
                      .        ++        ...+++.|++++..++..  |.         ..++.|+..|+..       ++....++  
T Consensus       137 ~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~  214 (457)
T 1xm9_A          137 IIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA--DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV  214 (457)
T ss_dssp             THHHHTCC---------CCCHHHHHHHHHHHHHHTTS--HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHH
T ss_pred             hccccccccCccchhcccccHHHHHHHHHHHHHHccC--HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHH
Confidence            3        22        245667999999998864  42         3566677766631       11110110  


Q ss_pred             HHHH--------------------------------HHHHh--------------hcCc--------ccchHHHHHHhcC
Q psy10471        127 TVAI--------------------------------AIVAE--------------TCSP--------FTVLPALMNEYRV  152 (318)
Q Consensus       127 ~~ai--------------------------------~~i~~--------------~~~p--------~~vip~L~~~~~d  152 (318)
                      ...+                                +.+..              ...|        ..++|.|...++.
T Consensus       215 L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~  294 (457)
T 1xm9_A          215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK  294 (457)
T ss_dssp             HHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH
T ss_pred             HHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh
Confidence            1111                                00000              0001        2457778888865


Q ss_pred             C-cchHHHHHHHHHHHHHHHHccc---c-ccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHH
Q psy10471        153 P-ELNVQNGVLKALSFLFEYIGEM---G-KDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL  225 (318)
Q Consensus       153 ~-~~~v~~~vl~al~~i~~~lg~~---~-~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hl  225 (318)
                      + ++.++..++.++..++..-+..   . ...+  ...+|.+.+++.+.+..+|..++.+++.++..-+  ..+-.-.+.
T Consensus       295 ~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~--~~~~i~~~~  372 (457)
T 1xm9_A          295 SKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL--LHRVMGNQV  372 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG--GHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHH--HHHHHHHhh
Confidence            4 4788899999999887532211   0 1112  3578999999999999999999999999977432  111111233


Q ss_pred             HHhhhhcccCCC------hHHHHHHHHHHHHHHHH-------cChhhHHHhHHHHhccc-cccchH-HHHHH
Q psy10471        226 LNYVWPNIFETS------PHLVQAFMDAVEGLRVA-------LGPVRILQYVLQGLFHP-ARKVRD-VYWKI  282 (318)
Q Consensus       226 l~~l~~~i~d~~------~~vr~~ii~~i~~i~~a-------lG~~~~~~~vl~~l~~~-a~~~r~-~~w~i  282 (318)
                      ++.+...+...+      +++...++.+++.+...       +...--.+.+...+-|. +.+++. +.|-+
T Consensus       373 i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L  444 (457)
T 1xm9_A          373 FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL  444 (457)
T ss_dssp             HHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            333344444432      35667777777766432       22223566666666777 554333 44433

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.34  E-value=4.7e-05  Score=80.80  Aligned_cols=184  Identities=14%  Similarity=0.069  Sum_probs=123.7

Q ss_pred             hhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCC-----CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDE-----QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE   78 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~-----~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~   78 (318)
                      .++.+=++|.+|..+.. .-.++++++++.++.+....     .+.++.+.+.++|++.++....  ++.+.+++..|++
T Consensus       496 lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h--~~~L~~vl~~L~~  573 (1073)
T 3gjx_A          496 LNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH--WKFLKTVVNKLFE  573 (1073)
T ss_dssp             HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC--HHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC--HHHHHHHHHHHHH
Confidence            44555566666532221 23478889999888777443     3566777889999999986532  6788889999999


Q ss_pred             HhhhchHHHHHHHHHHHHHHHhhhCHH----------HHHHHHHHhhcc--c--chhhHHHHHHHHHHHHhhcCcc----
Q psy10471         79 LLKAHKKAIRRATVNTFGYIAKAIGPH----------DVLATLLNNLKV--Q--ERQNRVCTTVAIAIVAETCSPF----  140 (318)
Q Consensus        79 ~L~d~~~~vR~~av~~lg~la~~igp~----------~~l~~Ll~~Lk~--~--~~~~R~~~~~ai~~i~~~~~p~----  140 (318)
                      .+.++++.|+.+|..||..+++.++..          ..+..+++.+..  .  +.+.....++|+|.+....++-    
T Consensus       574 ~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~  653 (1073)
T 3gjx_A          574 FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQE  653 (1073)
T ss_dssp             HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHH
Confidence            999988999999999999999887642          134555554431  1  2245566788998877655531    


Q ss_pred             ----cchHHHHHHhc--------------CCcchHH--HHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471        141 ----TVLPALMNEYR--------------VPELNVQ--NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL  191 (318)
Q Consensus       141 ----~vip~L~~~~~--------------d~~~~v~--~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l  191 (318)
                          .+||...+.+.              |++ .++  ..++++...++.++|..|.+++..+.|.+.++-
T Consensus       654 ~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~-~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~~~l~~y  723 (1073)
T 3gjx_A          654 HLIEKYMLLPNQVWDSIIQQATKNVDILKDPE-TVKQLGSILKTNVRACKAVGHPFVIQLGRIYLDMLNVY  723 (1073)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHH-HHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCchhccChH-HHHHHHHHHhhhHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence                34444433332              222 122  568888888899999888888877777665543

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.27  E-value=2e-06  Score=68.44  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=69.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHH
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLAT  110 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~  110 (318)
                      ++.+...++|+++.||..|+++||++..       . +   .+..|++.|+|++..||..|++++|.++    ....++.
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~-~---a~~~L~~~L~d~~~~VR~~A~~aL~~~~----~~~a~~~  108 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD-------E-R---AVEPLIKLLEDDSGFVRSGAARSLEQIG----GERVRAA  108 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS-------H-H---HHHHHHHHHHHCCTHHHHHHHHHHHHHC----SHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC-------H-H---HHHHHHHHHcCCCHHHHHHHHHHHHHhC----cHHHHHH
Confidence            4788899999999999999999998864       1 1   2344556678989999999999999875    3457888


Q ss_pred             HHHhhcccchhhHHHHHHHHH
Q psy10471        111 LLNNLKVQERQNRVCTTVAIA  131 (318)
Q Consensus       111 Ll~~Lk~~~~~~R~~~~~ai~  131 (318)
                      |...|++++..+|..++.+++
T Consensus       109 L~~~l~d~~~~vr~~A~~aL~  129 (131)
T 1te4_A          109 MEKLAETGTGFARKVAVNYLE  129 (131)
T ss_dssp             HHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence            999998888788888887764

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=98.19  E-value=6e-05  Score=67.58  Aligned_cols=172  Identities=8%  Similarity=-0.010  Sum_probs=118.5

Q ss_pred             hhhhHHHHHHHHHHHhc-----cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-h----hhHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMG-----CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-A----REWMRIC   73 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g-----~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~----~~~~~il   73 (318)
                      +|-.|+..+..+.....     +...+....+.+.+...+.|.|..|...++.++..++...+.... .    .....++
T Consensus        25 ~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l  104 (278)
T 4ffb_C           25 ARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWT  104 (278)
T ss_dssp             HHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Confidence            56677776665544221     123344556677788888999999999999999999987664322 2    2223344


Q ss_pred             HHHHHH-hhhchHHHHHHHHHHHHHHHhhhCH-HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---------cc
Q psy10471         74 FELLEL-LKAHKKAIRRATVNTFGYIAKAIGP-HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---------TV  142 (318)
Q Consensus        74 ~~Ll~~-L~d~~~~vR~~av~~lg~la~~igp-~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---------~v  142 (318)
                      ..|++- +.+.++.+|..++.++-.+++..++ ..++..++..++...-+.|..+...+..+...+|+.         .+
T Consensus       105 ~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i  184 (278)
T 4ffb_C          105 PLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPEL  184 (278)
T ss_dssp             HHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHH
Confidence            445543 6778888999999998887776654 567788888887655578888887777655554431         35


Q ss_pred             hHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc
Q psy10471        143 LPALMNEYRVPELNVQNGVLKALSFLFEYIGEM  175 (318)
Q Consensus       143 ip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~  175 (318)
                      ++.+...+.|.+.+||.++.+++..+.+.+|..
T Consensus       185 ~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          185 LKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             GGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            667777889999999999999999999999864

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=98.16  E-value=4.7e-05  Score=80.31  Aligned_cols=261  Identities=7%  Similarity=-0.019  Sum_probs=160.0

Q ss_pred             HHHHHHHHHhccCcCCChH-hHHHHHHhhcC---CCCHHHHHHHHHHHHHHHhhCCCCC--------ChhhHHHHHHHHH
Q psy10471         10 KIVQQIAILMGCAILPHLK-NLVEIIEHGLV---DEQQKVQENCIDLVGRIADRGPEYV--------SAREWMRICFELL   77 (318)
Q Consensus        10 ~~i~~La~~~g~~~~P~l~-~l~~~l~~~l~---d~~~~vR~aa~~~LG~la~~~~~~i--------~~~~~~~il~~Ll   77 (318)
                      .+++.++.+++....+++- .+.+.+...+.   +.++..+++|+.++|.++++.....        ..+.+.+++..++
T Consensus       420 ~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll  499 (980)
T 3ibv_A          420 IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVT  499 (980)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHH
Confidence            5667777766666666444 34444445553   3468999999999999999765311        1245555555443


Q ss_pred             H--HhhhchHHHHHHHHHHHHHHHhhhCH--H---HHHHHHHH--hhcccchhhHHHHHHHHHHHHhhcCcc--cchHHH
Q psy10471         78 E--LLKAHKKAIRRATVNTFGYIAKAIGP--H---DVLATLLN--NLKVQERQNRVCTTVAIAIVAETCSPF--TVLPAL  146 (318)
Q Consensus        78 ~--~L~d~~~~vR~~av~~lg~la~~igp--~---~~l~~Ll~--~Lk~~~~~~R~~~~~ai~~i~~~~~p~--~vip~L  146 (318)
                      +  ..+++++.||..+++++|+.++-+..  .   .+++.+++  .+.+++.++|..++.++..+++.|.+.  .-++.+
T Consensus       500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~i  579 (980)
T 3ibv_A          500 TSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESS  579 (980)
T ss_dssp             HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHH
T ss_pred             hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHH
Confidence            2  11267889999999999999987653  2   34555555  444555578888889999998888752  334445


Q ss_pred             HHHhcC-------Cc------------------chHHHHHHHHHHHHHHHHcc---ccccchhhhHHHHHHHHh----cC
Q psy10471        147 MNEYRV-------PE------------------LNVQNGVLKALSFLFEYIGE---MGKDYIYAVTPLLEDALM----DR  194 (318)
Q Consensus       147 ~~~~~d-------~~------------------~~v~~~vl~al~~i~~~lg~---~~~~yl~~iiP~l~~~l~----~~  194 (318)
                      ++.+++       +.                  -+-+-.+.++++.+....+.   .-..|+..+++.+.+-+.    ..
T Consensus       580 l~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~  659 (980)
T 3ibv_A          580 LAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSD  659 (980)
T ss_dssp             HHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            554432       10                  01245688888888887653   455788877766554442    11


Q ss_pred             ----CHHHH-HHHHHHHHHHhhhhcCC-C----chhHHHHHHHhhhhccc--CCChHHHHHHHHHHHHHHHHcChhh--H
Q psy10471        195 ----DLVHR-QTACATIKHMALGVYGF-G----CEDALTHLLNYVWPNIF--ETSPHLVQAFMDAVEGLRVALGPVR--I  260 (318)
Q Consensus       195 ----~~~~R-~~a~~~i~~la~~~~~~-~----~~~~i~hll~~l~~~i~--d~~~~vr~~ii~~i~~i~~alG~~~--~  260 (318)
                          +...+ .....+++.++.+.... +    ..+.+....+.++..+.  ..+..+|.++..++.++...+|.+.  +
T Consensus       660 ~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~  739 (980)
T 3ibv_A          660 LSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPK  739 (980)
T ss_dssp             CC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTT
T ss_pred             ccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHH
Confidence                22111 12334445555543211 0    12344444443322222  3578999999999999999999975  6


Q ss_pred             HHhHHHHhcc
Q psy10471        261 LQYVLQGLFH  270 (318)
Q Consensus       261 ~~~vl~~l~~  270 (318)
                      .|.++..++.
T Consensus       740 lp~~i~~ll~  749 (980)
T 3ibv_A          740 VPQLISILLN  749 (980)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6667776653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=98.16  E-value=0.00025  Score=70.54  Aligned_cols=256  Identities=14%  Similarity=0.069  Sum_probs=154.8

Q ss_pred             CCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC
Q psy10471         24 LPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIG  103 (318)
Q Consensus        24 ~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig  103 (318)
                      .++-+.-+|.++..|+..++.++..|+++|..+|....+.-..---...+..|+++|++++..+|+.|+++++.|+...+
T Consensus        43 ~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~  122 (584)
T 3l6x_A           43 PNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD  122 (584)
T ss_dssp             CCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC
T ss_pred             CCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC
Confidence            34445567778888888899999999999999996433211000001234557788899889999999999999995322


Q ss_pred             HH--------HHHHHHHHhhcc-cchhhHHHHHHHHHHHHhhcCc-----ccchHHHHHHhc-----------------C
Q psy10471        104 PH--------DVLATLLNNLKV-QERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYR-----------------V  152 (318)
Q Consensus       104 p~--------~~l~~Ll~~Lk~-~~~~~R~~~~~ai~~i~~~~~p-----~~vip~L~~~~~-----------------d  152 (318)
                      +.        -.++.|++.|+. .+...+..++-++..++..-..     ...+|+|++.+.                 +
T Consensus       123 ~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          123 QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence            32        257889999985 3445556666666655431000     135788887551                 1


Q ss_pred             -CcchHHHHHHHHHHHHHHHHccccccch---hhhHHHHHHHHhc------CCHHHHHHHHHHHHHHhhhhc--------
Q psy10471        153 -PELNVQNGVLKALSFLFEYIGEMGKDYI---YAVTPLLEDALMD------RDLVHRQTACATIKHMALGVY--------  214 (318)
Q Consensus       153 -~~~~v~~~vl~al~~i~~~lg~~~~~yl---~~iiP~l~~~l~~------~~~~~R~~a~~~i~~la~~~~--------  214 (318)
                       ++.+++..+..+|..+... +.....-+   ..+++.+.++++.      .+....+.+..++..|+-.+.        
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             cccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence             2356777777777766531 11112222   3466777777753      355677888888877664431        


Q ss_pred             ----------------CCCch-----hHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH-----------HcChhhHHH
Q psy10471        215 ----------------GFGCE-----DALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV-----------ALGPVRILQ  262 (318)
Q Consensus       215 ----------------~~~~~-----~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~-----------alG~~~~~~  262 (318)
                                      ..|.+     ..+..++..+-.   ..+++++..++.+|..++.           .+..+.-.|
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~---s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp  358 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE---SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS  358 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence                            01111     122222223212   2568899999888877753           233344577


Q ss_pred             hHHHHhccccccchHHHHHHH
Q psy10471        263 YVLQGLFHPARKVRDVYWKIY  283 (318)
Q Consensus       263 ~vl~~l~~~a~~~r~~~w~i~  283 (318)
                      .+...+.++...++..-...+
T Consensus       359 ~Lv~LL~s~~~~v~~~A~~aL  379 (584)
T 3l6x_A          359 AIADLLTNEHERVVKAASGAL  379 (584)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHH
Confidence            777777777766555333334

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.07  E-value=0.00013  Score=68.19  Aligned_cols=185  Identities=13%  Similarity=0.169  Sum_probs=121.6

Q ss_pred             CcCCC--hHh--HHHHHHhhcCCC--CHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHH
Q psy10471         22 AILPH--LKN--LVEIIEHGLVDE--QQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTF   95 (318)
Q Consensus        22 ~~~P~--l~~--l~~~l~~~l~d~--~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~l   95 (318)
                      +..||  ++.  +++- ...+++.  +++.++.+++.+=.+-..|.++. -.|...+++..++.+++++...|+...-.+
T Consensus        15 ~~~p~~~~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~-~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl   92 (355)
T 3tjz_B           15 GSNPFQHLEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLG-TTEATEAFFAMTKLFQSNDPTLRRMCYLTI   92 (355)
T ss_dssp             -----CCCCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHGGGGCCCHHHHHHHHHHH
T ss_pred             ccCccccchHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCc-hhHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            45666  333  5555 4577775  56665655555555555444332 566777888888888888888888777666


Q ss_pred             HHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc
Q psy10471         96 GYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM  175 (318)
Q Consensus        96 g~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~  175 (318)
                      ..+++.  |.++                                .-+++++++.++++++-++..++.+++.+..     
T Consensus        93 ~~~~~~--~~e~--------------------------------iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~-----  133 (355)
T 3tjz_B           93 KEMSCI--AEDV--------------------------------IIVTSSLTKDMTGKEDSYRGPAVRALCQITD-----  133 (355)
T ss_dssp             HHHTTT--SSCG--------------------------------GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC-----
T ss_pred             HHhCCC--HHHH--------------------------------HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC-----
Confidence            666653  2211                                1345567788888887777777777776543     


Q ss_pred             cccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        176 GKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       176 ~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                       ...++.+.+.+.+.+.|+++-+|+.|+-.+.++.....     +.+.++++.+.+.+.|.++-|...++.++..++.
T Consensus       134 -~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          134 -STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             -TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence             34566777888888888888888888888777755543     5566677776666777787787777777777764

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=98.03  E-value=0.00091  Score=59.87  Aligned_cols=163  Identities=14%  Similarity=0.165  Sum_probs=90.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH----hhhchHHHHHHHHHHHHHHHhhhC-------HH---
Q psy10471         40 DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL----LKAHKKAIRRATVNTFGYIAKAIG-------PH---  105 (318)
Q Consensus        40 d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~----L~d~~~~vR~~av~~lg~la~~ig-------p~---  105 (318)
                      +.+.+.|.+|+..|-...+..     .++....+..+++-    +.|++..+-..+++.+..+.+.++       ++   
T Consensus        57 s~d~k~~~~ale~L~~~l~~~-----~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~  131 (266)
T 2of3_A           57 HKDFKQHLAALDSLVRLADTS-----PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS  131 (266)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHC-----HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhhC-----hHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            446788888888888766542     23333333323322    235666666666666655543332       22   


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhH-
Q psy10471        106 DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVT-  184 (318)
Q Consensus       106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~ii-  184 (318)
                      .+++.|+.-+-+...++|..+-..+..+...+.|..+.+.+++-++.-+..++...+..+.++.+..|...    ...+ 
T Consensus       132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l~  207 (266)
T 2of3_A          132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSLS  207 (266)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGGC
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----ccccc
Confidence            24555555554444455555555555555555555666666666666555566666666666666666442    2233 


Q ss_pred             --HHHHHHHhcCCHHHHHHHHHHHHHHhh
Q psy10471        185 --PLLEDALMDRDLVHRQTACATIKHMAL  211 (318)
Q Consensus       185 --P~l~~~l~~~~~~~R~~a~~~i~~la~  211 (318)
                        |.+-..+.|+|..+|..|.+++..+=.
T Consensus       208 ~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          208 VEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence              555566666666666666666544433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00034  Score=71.26  Aligned_cols=222  Identities=11%  Similarity=0.109  Sum_probs=148.4

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHH---HHHHHHHHHHHHHhhhCHH
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKA---IRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~---vR~~av~~lg~la~~igp~  105 (318)
                      ..+|.+...++..++.+|+.|+++|+.++.........-+ ...+..|++.|.+....   .|..|..+++.+.-...|.
T Consensus       457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~  535 (778)
T 3opb_A          457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG  535 (778)
T ss_dssp             THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence            4778888889999999999999999999864221110000 12444567777774433   8999999999988666554


Q ss_pred             ---------HHHHHHHHhhcc-cch-------------hhHHHHHHHHHHHHhhc--------C---cc-cchHHHHHHh
Q psy10471        106 ---------DVLATLLNNLKV-QER-------------QNRVCTTVAIAIVAETC--------S---PF-TVLPALMNEY  150 (318)
Q Consensus       106 ---------~~l~~Ll~~Lk~-~~~-------------~~R~~~~~ai~~i~~~~--------~---p~-~vip~L~~~~  150 (318)
                               ..++.|++.|.. .+.             ..+..++.|+..++..-        .   .. .++|.+.+.+
T Consensus       536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL  615 (778)
T 3opb_A          536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM  615 (778)
T ss_dssp             HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred             HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence                     456788888872 221             12556667766555321        1   11 4789999999


Q ss_pred             cCCcchHHHHHHHHHHHHHHHHccccccch----hh---hHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc----CC-Cc
Q psy10471        151 RVPELNVQNGVLKALSFLFEYIGEMGKDYI----YA---VTPLLEDALMDRDLVHRQTACATIKHMALGVY----GF-GC  218 (318)
Q Consensus       151 ~d~~~~v~~~vl~al~~i~~~lg~~~~~yl----~~---iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~----~~-~~  218 (318)
                      .+++..+|++++++++.+...-......|.    +.   =++.+..++...|...|+.|+.+++.++....    .. ..
T Consensus       616 ~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~  695 (778)
T 3opb_A          616 LDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTK  695 (778)
T ss_dssp             GCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTC
T ss_pred             hCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHc
Confidence            988889999999999999974321112333    12   26788899999999999999999988853221    11 11


Q ss_pred             hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      ...+..++..+ ... .+++++|...+-++..++.
T Consensus       696 ~~gi~~Ll~lL-~~~-~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          696 KELIENAIQVF-ADQ-IDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHH-HHT-TTCHHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHH-hcc-CCCHHHHHHHHHHHHHHHH
Confidence            23444444432 222 2688999999999999985

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.98  E-value=0.00021  Score=75.80  Aligned_cols=197  Identities=15%  Similarity=0.110  Sum_probs=120.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-----chHHHHHHHHHHHHHHHhhhCHH-HHHHHHHHh
Q psy10471         41 EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-----HKKAIRRATVNTFGYIAKAIGPH-DVLATLLNN  114 (318)
Q Consensus        41 ~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-----~~~~vR~~av~~lg~la~~igp~-~~l~~Ll~~  114 (318)
                      .++..++++++++|-+|....+...-+.++.++..|+++...     ++..+|...+.++|+..+-+.-+ +.+.     
T Consensus       491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----  565 (1073)
T 3gjx_A          491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----  565 (1073)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----
T ss_pred             CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----
Confidence            469999999999999995333211112344454555554432     23345555668899877643211 1111     


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc--------ccchhhhHHH
Q psy10471        115 LKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG--------KDYIYAVTPL  186 (318)
Q Consensus       115 Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~--------~~yl~~iiP~  186 (318)
                                                .++..++.-+.+.++.++.+++.|+..+++..+..+        .+|+.+++..
T Consensus       566 --------------------------~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~  619 (1073)
T 3gjx_A          566 --------------------------TVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN  619 (1073)
T ss_dssp             --------------------------HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTS
T ss_pred             --------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Confidence                                      233346666778888999999999999988777654        4588888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCC-chhHHHHHHH---hhhhcccC---------CChH---HHHHHHHHHHH
Q psy10471        187 LEDALMDRDLVHRQTACATIKHMALGVYGFG-CEDALTHLLN---YVWPNIFE---------TSPH---LVQAFMDAVEG  250 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~-~~~~i~hll~---~l~~~i~d---------~~~~---vr~~ii~~i~~  250 (318)
                      +.....+=++.-.....++++.++....... ....+..+++   --|..+-+         .+++   -...++.+..+
T Consensus       620 ~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~  699 (1073)
T 3gjx_A          620 INTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVR  699 (1073)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHH
Confidence            8887766677777777888888877764221 1223333221   11222221         1233   23456677778


Q ss_pred             HHHHcChhh--HHHhHHHHh
Q psy10471        251 LRVALGPVR--ILQYVLQGL  268 (318)
Q Consensus       251 i~~alG~~~--~~~~vl~~l  268 (318)
                      +|.++|..+  ..+.+++-|
T Consensus       700 v~~~~g~~f~~~~~~i~~~~  719 (1073)
T 3gjx_A          700 ACKAVGHPFVIQLGRIYLDM  719 (1073)
T ss_dssp             HHHHHCGGGHHHHHHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHH
Confidence            999999865  444455545

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.84  E-value=0.0009  Score=56.49  Aligned_cols=202  Identities=15%  Similarity=0.157  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH--HHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCc--ccchHH
Q psy10471         71 RICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH--DVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSP--FTVLPA  145 (318)
Q Consensus        71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~--~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p--~~vip~  145 (318)
                      .++..++..|.|+-..||..|+..+..+++....-  -++..|+-.++ ++.-..-..++.++|.++..--.  -.++|.
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vVp~  111 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPV  111 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhHHH
Confidence            45667778888877779999999999998755431  35666666666 33335556788888888754321  279999


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHH
Q psy10471        146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHL  225 (318)
Q Consensus       146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hl  225 (318)
                      +...|+-.++-.+-.+--++..|.+.-.    .-++.+.--+...+++.|...|..+.+.++.+..+-     -..+..+
T Consensus       112 lfanyrigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~Pf  182 (253)
T 2db0_A          112 LFANYRIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPF  182 (253)
T ss_dssp             HHHHSCCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGG
T ss_pred             HHHHHhcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcc
Confidence            9999999988888777777777776521    233555566677778889999999999997764432     3566678


Q ss_pred             HHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh--cccc-----ccchHHHHHHH
Q psy10471        226 LNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL--FHPA-----RKVRDVYWKIY  283 (318)
Q Consensus       226 l~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l--~~~a-----~~~r~~~w~i~  283 (318)
                      +|++...+.|.+.-||.++.++++.++..  .+.+.+-+..-+  |.|.     ++|+++.-|+.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            88888888889999999999999998653  344777777777  4444     34666666554

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.69  E-value=0.0009  Score=65.43  Aligned_cols=232  Identities=11%  Similarity=0.125  Sum_probs=151.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCC----CCChhhHHHHHHHH-----HHHhhh----c-hHHHHHHHHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPE----YVSAREWMRICFEL-----LELLKA----H-KKAIRRATVNTF   95 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~----~i~~~~~~~il~~L-----l~~L~d----~-~~~vR~~av~~l   95 (318)
                      +...+..-|=|+.|.+|..|+.+|.++...-|.    ......  .+...|     |+...|    + -..||..|-.++
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~--DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL  252 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS--KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL  252 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT--THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH--HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence            666677777788999999999999999864431    111111  222222     233333    2 335999999999


Q ss_pred             HHHHhhhCHH-HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc-cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHc
Q psy10471         96 GYIAKAIGPH-DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF-TVLPALMNEYRVPELNVQNGVLKALSFLFEYIG  173 (318)
Q Consensus        96 g~la~~igp~-~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~-~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg  173 (318)
                      |.+ ..+.+. .++..++..+..+.-++|..-..++.++.+-.... .++|+++.-++|++.+|+..+..++.-++    
T Consensus       253 GaL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA----  327 (800)
T 3oc3_A          253 SRI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP----  327 (800)
T ss_dssp             HHH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC----
T ss_pred             HHH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc----
Confidence            999 777654 56666665554444467777777776663333222 67889999999999999998888887766    


Q ss_pred             cccccchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHH
Q psy10471        174 EMGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL  251 (318)
Q Consensus       174 ~~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i  251 (318)
                        ..+.++.++-.+=+.+.+-|  ..--....++++.+...-......   ..+.|+++|.+..+-++||.+++.++.++
T Consensus       328 --~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~d---p~LVPRL~PFLRHtITSVR~AVL~TL~tf  402 (800)
T 3oc3_A          328 --ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIP---PERLKDIFPCFTSPVPEVRTSILNMVKNL  402 (800)
T ss_dssp             --CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCC---SGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred             --chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccC---hHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence              24567777777777776443  111122233333332222111111   27889999999999999999999999888


Q ss_pred             HHHcChhhHHHhHHHHh-ccccccchH
Q psy10471        252 RVALGPVRILQYVLQGL-FHPARKVRD  277 (318)
Q Consensus       252 ~~alG~~~~~~~vl~~l-~~~a~~~r~  277 (318)
                      .    .+.++..+++-+ ++....+++
T Consensus       403 L----~~~~LRLIFQNILLE~neeIl~  425 (800)
T 3oc3_A          403 S----EESIDFLVAEVVLIEEKDEIRE  425 (800)
T ss_dssp             C----CHHHHHHHHHHHHHCSCHHHHH
T ss_pred             H----hhhHHHHHHHHHHhCCcHHHHH
Confidence            7    455666666665 566655666

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=97.66  E-value=0.0015  Score=64.82  Aligned_cols=171  Identities=15%  Similarity=0.124  Sum_probs=118.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhC----CC---CC-------------C--hhhH---HHHHHHHHHHhhh-chHHHHHHHHHH
Q psy10471         41 EQQKVQENCIDLVGRIADRG----PE---YV-------------S--AREW---MRICFELLELLKA-HKKAIRRATVNT   94 (318)
Q Consensus        41 ~~~~vR~aa~~~LG~la~~~----~~---~i-------------~--~~~~---~~il~~Ll~~L~d-~~~~vR~~av~~   94 (318)
                      .+....+.|+.+|..|+...    +.   +.             .  -.+|   ...+..|+.+|++ .++.+++.|+.+
T Consensus       253 ~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~A  332 (584)
T 3l6x_A          253 SDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGA  332 (584)
T ss_dssp             CSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHH
Confidence            45678899999999988541    10   00             0  0111   2455667788876 578899999999


Q ss_pred             HHHHHhhhCH-----------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-----ccchHHHHHHhcCCc----
Q psy10471         95 FGYIAKAIGP-----------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-----FTVLPALMNEYRVPE----  154 (318)
Q Consensus        95 lg~la~~igp-----------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-----~~vip~L~~~~~d~~----  154 (318)
                      +..++..-++           ...++.|++.|+.++...+..++.++..++....-     ..++|.|++.+..++    
T Consensus       333 L~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~  412 (584)
T 3l6x_A          333 IQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSS  412 (584)
T ss_dssp             HHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGG
T ss_pred             HHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCccccc
Confidence            9988743222           24588899999887778888888899887753221     368999999998763    


Q ss_pred             ----chHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcC--CHHHHHHHHHHHHHHhh
Q psy10471        155 ----LNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDR--DLVHRQTACATIKHMAL  211 (318)
Q Consensus       155 ----~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~--~~~~R~~a~~~i~~la~  211 (318)
                          .++...++.++..+...-....+..+ ...+|.+.+++++.  +...++.|+.++..+..
T Consensus       413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence                34566777777776632111222222 35889999999876  78999999999988874

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=97.65  E-value=0.0038  Score=54.61  Aligned_cols=139  Identities=12%  Similarity=0.130  Sum_probs=104.8

Q ss_pred             hhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc-ccchhhHHHHHHHHHHHHhhcCcccchH
Q psy10471         66 AREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLK-VQERQNRVCTTVAIAIVAETCSPFTVLP  144 (318)
Q Consensus        66 ~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk-~~~~~~R~~~~~ai~~i~~~~~p~~vip  144 (318)
                      .+++.++...|.   ++++.++|-.|+..+|+. . .. .++++.+...+- ++.=++|.+++.+++.++...+|-..++
T Consensus        69 ~~~~~~la~~L~---~~~~deVR~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~  142 (240)
T 3l9t_A           69 GEYIKKLAFLAY---QSDVYQVRMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALP  142 (240)
T ss_dssp             HHHHHHHHHHHH---TCSSHHHHHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred             HHHHHHHHHHHH---hCcchHHHHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHH
Confidence            567788877666   888899999999999988 3 22 345555555343 3333899999999998887667777888


Q ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhh
Q psy10471        145 ALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       145 ~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~  212 (318)
                      .+..=.+|++..+|+.+....--.++  ...++..-..++|.+.....|.+..+|+..+..+..++..
T Consensus       143 ~~~~W~~d~n~~VRR~Ase~~rpW~~--~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          143 IIDEWLKSSNLHTRRAATEGLRIWTN--RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHTCSGGG--STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCCHHHHHHHHHhhHHHhc--cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            88877799999999887776543221  1334555567999999999999999999999999888654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.56  E-value=0.0083  Score=52.44  Aligned_cols=173  Identities=16%  Similarity=0.171  Sum_probs=124.0

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----c
Q psy10471         72 ICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----F  140 (318)
Q Consensus        72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~  140 (318)
                      .+..|+.+|.+.++.++..|+-+++.+-+.++.       ..+++.+++.++.++.++-.-..+++..+-+...+    |
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            444566777998889999999999999887643       25788888898877765544556666666554432    3


Q ss_pred             -cchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCc-
Q psy10471        141 -TVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGC-  218 (318)
Q Consensus       141 -~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~-  218 (318)
                       .++.++.+..+.++.-++..+...++.+      ......+.++..+..++...+..++..+..++..++......+. 
T Consensus       114 ~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          114 LKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence             7899999999987766666555554433      33445688999999999999999999999999998887643322 


Q ss_pred             hhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        219 EDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       219 ~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      ++.+..+.    ..+..+++.++.-++++++.+...
T Consensus       188 ~~I~~eI~----elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          188 TLILDEIP----SLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGTTTTHH----HHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHH----HHHcCCCHHHHHHHHHHHHHHHcC
Confidence            23332322    223337899999999999988554

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=97.51  E-value=0.00035  Score=61.21  Aligned_cols=135  Identities=14%  Similarity=0.105  Sum_probs=103.5

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHH-HhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLE-LLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~-~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      .++++++...+.+|+...||-.|+..||+. .   +   ..+.++.+.   + +-.|++..||..+-.+|+.++...+|.
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~---~---~~~~L~~ir---~~va~D~~WrVre~lA~a~~~~~~~~~pe  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S---K---DKEILIFMR---DEVSKDNNWRVQEVLAKAFDEFCKKIEYK  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T---T---SHHHHHHHH---HTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c---C---cHHHHHHHH---HHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence            677888888888888899999999999998 3   1   234444433   4 334577789999999999999778998


Q ss_pred             HHHHHHHHhhcccchhhHHHHHHHHHHHH----hhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        106 DVLATLLNNLKVQERQNRVCTTVAIAIVA----ETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       106 ~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~----~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                      ..++.+..-.++++..+|+.++...-.-+    ..-.|..++|.+-+...|++..||++|..+|..+.|.
T Consensus       139 ~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence            77777787778888889998887653211    2233457888888888999999999999999988774

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.46  E-value=0.0002  Score=66.90  Aligned_cols=222  Identities=9%  Similarity=0.056  Sum_probs=100.2

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |-.|+++++.+..      ..-++.+.+.+...+.|.+|.||++|+-+...+....++.  .+.|..-+.   +.+.|.+
T Consensus       121 R~lALRtL~~I~~------~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~--v~~~~~~l~---~ll~d~n  189 (355)
T 3tjz_B          121 RGPAVRALCQITD------STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV--VKRWVNEAQ---EAASSDN  189 (355)
T ss_dssp             HHHHHHHHHHHCC------TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH--HHTTHHHHH---HHTTCSS
T ss_pred             HHHHHHHHhcCCC------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH--HHHHHHHHH---HHhcCCC
Confidence            4466777776655      3346677777888889999999999998888887765543  244555444   5668888


Q ss_pred             HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccc---hhhHHHHHHHHHHHHhh---cCcccchHHHHHHhcCCcchHH
Q psy10471         85 KAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQE---RQNRVCTTVAIAIVAET---CSPFTVLPALMNEYRVPELNVQ  158 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~---~~~R~~~~~ai~~i~~~---~~p~~vip~L~~~~~d~~~~v~  158 (318)
                      +.|...|+..+..+.+ .++. .+..|+..+....   .-..+...+.++.++..   .....+++.+...++..+..|.
T Consensus       190 ~~V~~~Al~lL~ei~~-~d~~-a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVv  267 (355)
T 3tjz_B          190 IMVQYHALGLLYHVRK-NDRL-AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVV  267 (355)
T ss_dssp             HHHHHHHHHHHHHHHT-TCHH-HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHH
T ss_pred             ccHHHHHHHHHHHHHh-hchH-HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHH
Confidence            8888888888887775 3432 3334444443211   11111122222111111   0112445555555565555565


Q ss_pred             HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCCh
Q psy10471        159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSP  238 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~  238 (318)
                      =.+++++..+-. .+   ...+...++.+..++..+++++|-.+...+..++..-.     +.++....-+...+.|++.
T Consensus       268 yEa~k~I~~l~~-~~---~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-----~~v~~~n~~ie~li~d~n~  338 (355)
T 3tjz_B          268 YEAASAIVNLPG-CS---AKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-----SAVTACNLDLENLVTDANR  338 (355)
T ss_dssp             HHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------------------------
T ss_pred             HHHHHHHHhccC-CC---HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-----HHHHHHHHHHHHHccCCcH
Confidence            555566655432 11   12234455667788888899999888888777655432     3344344444667777776


Q ss_pred             HHHHHHHHHH
Q psy10471        239 HLVQAFMDAV  248 (318)
Q Consensus       239 ~vr~~ii~~i  248 (318)
                      .+.--++.++
T Consensus       339 sI~t~Aittl  348 (355)
T 3tjz_B          339 SIATLAITTL  348 (355)
T ss_dssp             ----------
T ss_pred             hHHHHHHHHh
Confidence            6655544443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.39  E-value=0.0082  Score=58.80  Aligned_cols=224  Identities=12%  Similarity=0.092  Sum_probs=145.4

Q ss_pred             hhhhHHHHHHHHHHHhcc--CcCCChH-hHHHHH-----Hhhc----CCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHH
Q psy10471          4 DKNLGIKIVQQIAILMGC--AILPHLK-NLVEII-----EHGL----VDEQ-QKVQENCIDLVGRIADRGPEYVSAREWM   70 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~--~~~P~l~-~l~~~l-----~~~l----~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~   70 (318)
                      .||-|..++.|+....|.  +..-..+ ++.-.+     ++.+    .|+- ..||++|+.+||.+ ...++.      .
T Consensus       190 iRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e------~  262 (800)
T 3oc3_A          190 KRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP------N  262 (800)
T ss_dssp             HHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS------C
T ss_pred             hhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh------H
Confidence            599999999999998764  1111111 322221     2333    3433 67999999999999 544432      2


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhC-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcc---cchHHH
Q psy10471         71 RICFELLELLKAHKKAIRRATVNTFGYIAKAIG-PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPF---TVLPAL  146 (318)
Q Consensus        71 ~il~~Ll~~L~d~~~~vR~~av~~lg~la~~ig-p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~---~vip~L  146 (318)
                      .++..++..+..+...+|+.++=.+-++.+.+. -..+++.++..|++.+-.+|..+|.++--++   .|.   .++..+
T Consensus       263 ~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iL  339 (800)
T 3oc3_A          263 DIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKC  339 (800)
T ss_dssp             CHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHH
T ss_pred             HHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHH
Confidence            355544443344555699999988888844443 2357888889999888889988888886554   331   444444


Q ss_pred             HHHhcCC-cchH-HHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH
Q psy10471        147 MNEYRVP-ELNV-QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH  224 (318)
Q Consensus       147 ~~~~~d~-~~~v-~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h  224 (318)
                      -+.+.+- +.+. -.++...++.++..-...+.  -+.++|.+--++++.-++||++...++..+.       ..+.+.|
T Consensus       340 Wd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~--dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRL  410 (800)
T 3oc3_A          340 WKNIESEELISVSKTSNLSLLTKIYRENPELSI--PPERLKDIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFL  410 (800)
T ss_dssp             HHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC--CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHH
T ss_pred             HHHhhhhcccchhhHHHHHHHHHHHcCCccccc--ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHH
Confidence            4444432 2332 36677777777764221111  1488899999999999999999999986654       2244555


Q ss_pred             HHHhhhhcccCCChHHHHHHHHHHH
Q psy10471        225 LLNYVWPNIFETSPHLVQAFMDAVE  249 (318)
Q Consensus       225 ll~~l~~~i~d~~~~vr~~ii~~i~  249 (318)
                      +...+   +.|++++++....+.+.
T Consensus       411 IFQNI---LLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          411 VAEVV---LIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHH---HHCSCHHHHHHHHHHHH
T ss_pred             HHHHH---HhCCcHHHHHHHHHHHH
Confidence            54333   55789999999888886

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=97.32  E-value=0.0043  Score=54.42  Aligned_cols=153  Identities=14%  Similarity=0.153  Sum_probs=94.4

Q ss_pred             hHHHHHHhhcCCCCH--HHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471         29 NLVEIIEHGLVDEQQ--KVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD  106 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~--~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~  106 (318)
                      -.+|.++..|+.+++  .++..|+++|..++....+.-..---...+..|+++|++++..+|+.|.+++..|+.. .+. 
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~-   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DND-   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHH-
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHH-
Confidence            346777888888776  8999999999999975432110000012445677888998899999999999999852 221 


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc-CCcchHHHHHHHHHHHHHHHHccccccch-hhhH
Q psy10471        107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR-VPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVT  184 (318)
Q Consensus       107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~-d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~ii  184 (318)
                                     .|..+.       +    ...+|.|++.++ .++.++++.+..++-.+...  ...+.-+ ..-+
T Consensus        86 ---------------nk~~I~-------~----~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~~i  137 (233)
T 3tt9_A           86 ---------------NKLEVA-------E----LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITEAL  137 (233)
T ss_dssp             ---------------HHHHHH-------H----TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHHHH
T ss_pred             ---------------HHHHHH-------H----cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhccH
Confidence                           111111       1    145777888776 45677777777776666432  1112111 2234


Q ss_pred             HHHHHHHh----------------cCCHHHHHHHHHHHHHHhh
Q psy10471        185 PLLEDALM----------------DRDLVHRQTACATIKHMAL  211 (318)
Q Consensus       185 P~l~~~l~----------------~~~~~~R~~a~~~i~~la~  211 (318)
                      |.+.+.+.                ..+..++..++..+..++.
T Consensus       138 ~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss  180 (233)
T 3tt9_A          138 LTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS  180 (233)
T ss_dssp             HHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence            44444321                1256888888888877765

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=97.22  E-value=0.051  Score=58.49  Aligned_cols=127  Identities=6%  Similarity=0.028  Sum_probs=85.3

Q ss_pred             CCChH-hHHHHHHhhc---CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh------------chHHH
Q psy10471         24 LPHLK-NLVEIIEHGL---VDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA------------HKKAI   87 (318)
Q Consensus        24 ~P~l~-~l~~~l~~~l---~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d------------~~~~v   87 (318)
                      .++++ .+.+.+++.+   +..+|.+|..++.++|.+..+...  .+..+.+++..++..+.+            ..+++
T Consensus       523 ~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~--~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~v  600 (1204)
T 3a6p_A          523 REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY--RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNV  600 (1204)
T ss_dssp             TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT--CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHH
T ss_pred             cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhhccCCcccccccccHHHHHH
Confidence            35555 3455555543   446899999999999999987553  255667777777777665            45689


Q ss_pred             HHHHHHHHHHHHhhhCHH------HHHHHHHHhhcccc---hhhHHHHHHHHHHHHhhcCcc--------cchHHHHHHh
Q psy10471         88 RRATVNTFGYIAKAIGPH------DVLATLLNNLKVQE---RQNRVCTTVAIAIVAETCSPF--------TVLPALMNEY  150 (318)
Q Consensus        88 R~~av~~lg~la~~igp~------~~l~~Ll~~Lk~~~---~~~R~~~~~ai~~i~~~~~p~--------~vip~L~~~~  150 (318)
                      |++|..+|..+++.+++.      .+...+-..+...+   ...+....+++++++...+|+        .+++++++.+
T Consensus       601 r~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w  680 (1204)
T 3a6p_A          601 RRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIW  680 (1204)
T ss_dssp             HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999877543      23333333333222   357788899998887665552        4666777666


Q ss_pred             cC
Q psy10471        151 RV  152 (318)
Q Consensus       151 ~d  152 (318)
                      .+
T Consensus       681 ~~  682 (1204)
T 3a6p_A          681 LS  682 (1204)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0078  Score=61.33  Aligned_cols=209  Identities=14%  Similarity=0.074  Sum_probs=137.3

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCCCCHH---HHHHHHHHHHHHHhhCCCCC--ChhhHHHHHHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVDEQQK---VQENCIDLVGRIADRGPEYV--SAREWMRICFEL   76 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d~~~~---vR~aa~~~LG~la~~~~~~i--~~~~~~~il~~L   76 (318)
                      -|+.++++|..|+.--.  .+..+  +.-++.+++.+.+.++.   +|..|+.+|.+++...-+..  ........+..|
T Consensus       473 ~re~A~~aL~nLS~d~~--~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pL  550 (778)
T 3opb_A          473 CKQQVVRIIYNITRSKN--FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFL  550 (778)
T ss_dssp             HHHHHHHHHHHHHTSGG--GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHH--HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHH
Confidence            36678888888876311  11111  24567788888886544   89999999999995442110  000001355556


Q ss_pred             HHHhhh-chH-------------HHHHHHHHHHHHHHhhhCH------H------HHHHHHHHhhcccchhhHHHHHHHH
Q psy10471         77 LELLKA-HKK-------------AIRRATVNTFGYIAKAIGP------H------DVLATLLNNLKVQERQNRVCTTVAI  130 (318)
Q Consensus        77 l~~L~d-~~~-------------~vR~~av~~lg~la~~igp------~------~~l~~Ll~~Lk~~~~~~R~~~~~ai  130 (318)
                      +++|.. +..             --+..|+.+++.++..-++      .      ..++.|.+.|.++....|..++.++
T Consensus       551 v~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI  630 (778)
T 3opb_A          551 FELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI  630 (778)
T ss_dssp             HHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred             HHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            677772 111             1277899999999863221      1      2466677777766668899999999


Q ss_pred             HHHHhhcC----cc---c------chHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhc--
Q psy10471        131 AIVAETCS----PF---T------VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMD--  193 (318)
Q Consensus       131 ~~i~~~~~----p~---~------vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~--  193 (318)
                      ..++....    .+   .      =++.|+..++..+.++|.++..++..+...-...+...+  ...+..+.+++.+  
T Consensus       631 ~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~  710 (778)
T 3opb_A          631 SNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQI  710 (778)
T ss_dssp             HHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccC
Confidence            76652111    11   1      177888999888999999999999987654333333333  3477888888888  


Q ss_pred             CCHHHHHHHHHHHHHHhhhhc
Q psy10471        194 RDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       194 ~~~~~R~~a~~~i~~la~~~~  214 (318)
                      .+..+|..++.++..|+....
T Consensus       711 ~~~~l~~R~~~~l~NL~~~~~  731 (778)
T 3opb_A          711 DDIELRQRLLMLFFGLFEVIP  731 (778)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999987553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=97.07  E-value=9.5e-05  Score=65.54  Aligned_cols=138  Identities=14%  Similarity=0.097  Sum_probs=87.3

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHh
Q psy10471         35 EHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNN  114 (318)
Q Consensus        35 ~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~  114 (318)
                      ..+++|++++||+++++.++       +.        .   +..+++|++..||..+.+.+       ++    ..|...
T Consensus        56 ~~ll~d~~~~VR~~AA~~l~-------~~--------~---l~~L~~D~~~~VR~~aA~~L-------~~----~~L~~l  106 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYSP-------VE--------A---LTPLIRDSDEVVRRAVAYRL-------PR----EQLSAL  106 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTSC-------GG--------G---GGGGTTCSSHHHHHHHHTTS-------CS----GGGGGT
T ss_pred             HHHhcCCCHHHHHHHHHhCC-------HH--------H---HHHHccCcCHHHHHHHHHHC-------CH----HHHHHH
Confidence            36678999999999998642       11        1   33556888889999888753       22    235556


Q ss_pred             hcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcC
Q psy10471        115 LKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDR  194 (318)
Q Consensus       115 Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~  194 (318)
                      +++++..+|..++..+        |.   +.+....+|++.+|+..+...+       +       +   +.+..+++|.
T Consensus       107 l~D~d~~VR~~aA~~l--------~~---~~L~~L~~D~d~~VR~~aA~~l-------~-------~---~~l~~l~~D~  158 (244)
T 1lrv_A          107 MFDEDREVRITVADRL--------PL---EQLEQMAADRDYLVRAYVVQRI-------P-------P---GRLFRFMRDE  158 (244)
T ss_dssp             TTCSCHHHHHHHHHHS--------CT---GGGGGGTTCSSHHHHHHHHHHS-------C-------G---GGGGGTTTCS
T ss_pred             HcCCCHHHHHHHHHhC--------CH---HHHHHHHcCCCHHHHHHHHHhc-------C-------H---HHHHHHHcCC
Confidence            6777778888887753        11   2244446788888887776631       1       1   2344566788


Q ss_pred             CHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHH
Q psy10471        195 DLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDA  247 (318)
Q Consensus       195 ~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~  247 (318)
                      ++.||..++..+       .        .   +.+...+.|++++||..++..
T Consensus       159 d~~VR~~aa~~l-------~--------~---~ll~~ll~D~d~~VR~aaa~~  193 (244)
T 1lrv_A          159 DRQVRKLVAKRL-------P--------E---ESLGLMTQDPEPEVRRIVASR  193 (244)
T ss_dssp             CHHHHHHHHHHS-------C--------G---GGGGGSTTCSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHcC-------C--------H---HHHHHHHcCCCHHHHHHHHHh
Confidence            888888777641       1        0   122334556777777777654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.76  E-value=0.33  Score=46.59  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=73.8

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHH
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVL  108 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l  108 (318)
                      +-+..++.++.|++..||..|++.|.++|..  +.     ..++...|.++|+.+.+.-+..+-++|..+-+ ++|...+
T Consensus        65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~-----i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk-~Dpk~tl  136 (507)
T 3u0r_A           65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG--EN-----LPRVADILTQLLQTDDSAEFNLVNNALLSIFK-MDAKGTL  136 (507)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TC-----HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hh-----hhhHHHHHHHHHhccchHHHHHHHHHHHHHHh-cChHHHH
Confidence            4666688999999999999999999999976  32     44566667788898777777778888888886 8998888


Q ss_pred             HHHHHhhcccchhhHHHHHHHHHHHHhhcC
Q psy10471        109 ATLLNNLKVQERQNRVCTTVAIAIVAETCS  138 (318)
Q Consensus       109 ~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~  138 (318)
                      ..+++.+...+...|-   ++|..|++...
T Consensus       137 ~~lf~~i~~~~e~~Re---r~lkFi~~kl~  163 (507)
T 3u0r_A          137 GGLFSQILQGEDIVRE---RAIKFLSTKLK  163 (507)
T ss_dssp             HHHHHHHHHSCHHHHH---HHHHHHHHHGG
T ss_pred             HHHHHHHcccchHHHH---HHHHHHHHHHh
Confidence            8888877655554442   24444554433

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.52  E-value=0.048  Score=47.62  Aligned_cols=149  Identities=16%  Similarity=0.079  Sum_probs=96.2

Q ss_pred             HHHHHHhhhchH--HHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhc
Q psy10471         74 FELLELLKAHKK--AIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYR  151 (318)
Q Consensus        74 ~~Ll~~L~d~~~--~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~  151 (318)
                      ..+.++|++++.  .++..|..++..++..-.+.                 |..+.       +    ...+|.|.+.++
T Consensus        11 ~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~-----------------r~~I~-------~----~G~Ip~LV~lL~   62 (233)
T 3tt9_A           11 ERAVSMLEADHMLPSRISAAATFIQHECFQKSEA-----------------RKRVN-------Q----LRGILKLLQLLK   62 (233)
T ss_dssp             HHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHH-----------------HHHHH-------H----TTHHHHHHHGGG
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHH-----------------HHHHH-------H----cCCHHHHHHHHc
Confidence            345566676544  67777777777666422221                 11111       1    145789999999


Q ss_pred             CCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHh-cCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHh
Q psy10471        152 VPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALM-DRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNY  228 (318)
Q Consensus       152 d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~-~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~  228 (318)
                      .++.++|..++.++..+... ....+..+  ..-+|.+.++++ ..+..++++++.++-.++..-.  .+...+.+-++.
T Consensus        63 s~~~~vq~~Aa~aL~nLa~~-~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~--~k~~i~~~~i~~  139 (233)
T 3tt9_A           63 VQNEDVQRAVCGALRNLVFE-DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK--LKNLMITEALLT  139 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG--GHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh--hHHHHHhccHHH
Confidence            98899999999999988752 12334444  347899999998 4789999999999988875432  333333333333


Q ss_pred             hhhccc-------C---------CChHHHHHHHHHHHHHHH
Q psy10471        229 VWPNIF-------E---------TSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       229 l~~~i~-------d---------~~~~vr~~ii~~i~~i~~  253 (318)
                      +...+.       +         .+++++.++..++..++.
T Consensus       140 Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss  180 (233)
T 3tt9_A          140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS  180 (233)
T ss_dssp             HCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence            333321       1         256888888888877755

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=96.48  E-value=0.0069  Score=61.26  Aligned_cols=86  Identities=15%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-HHhhhchHHHHHHHHHHHHHHHhhhCHH--
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELL-ELLKAHKKAIRRATVNTFGYIAKAIGPH--  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll-~~L~d~~~~vR~~av~~lg~la~~igp~--  105 (318)
                      .++|++ ..|++.++..|..|+.+|+.+++.... ........++..++ ..|.|++..||.+|..+|+.|+..-|+.  
T Consensus        35 ~i~Pll-~~L~S~~~~~r~~A~~al~~l~~~~~~-~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           35 KILPVL-KDLKSPDAKSRTTAAGAIANIVQDAKC-RKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             TTHHHH-HHHSSSCCSHHHHHHHHHHHHTTSHHH-HHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hHHHHH-HHcCCCCHHHHHHHHHHHHHHHcCcHH-HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            456644 458899999999999999999963221 00111112333333 4578889999999999999999876764  


Q ss_pred             ------HHHHHHHHhhc
Q psy10471        106 ------DVLATLLNNLK  116 (318)
Q Consensus       106 ------~~l~~Ll~~Lk  116 (318)
                            .+++.|+..|+
T Consensus       113 ~~l~~~~il~~L~~~l~  129 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAK  129 (684)
T ss_dssp             HHHHHTTHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHH
Confidence                  24555555554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.42  E-value=0.0012  Score=58.48  Aligned_cols=141  Identities=12%  Similarity=0.051  Sum_probs=96.2

Q ss_pred             HHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Q psy10471         34 IEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLN  113 (318)
Q Consensus        34 l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~  113 (318)
                      +..+++|+++.||.+++..++       .        +.   +..+++|++..||..+...+       .+.    .|..
T Consensus        79 l~~L~~D~~~~VR~~aA~~L~-------~--------~~---L~~ll~D~d~~VR~~aA~~l-------~~~----~L~~  129 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRLP-------R--------EQ---LSALMFDEDREVRITVADRL-------PLE----QLEQ  129 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTSC-------S--------GG---GGGTTTCSCHHHHHHHHHHS-------CTG----GGGG
T ss_pred             HHHHccCcCHHHHHHHHHHCC-------H--------HH---HHHHHcCCCHHHHHHHHHhC-------CHH----HHHH
Confidence            667789999999999997642       1        12   33667888889998888753       221    2344


Q ss_pred             hhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc
Q psy10471        114 NLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD  193 (318)
Q Consensus       114 ~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~  193 (318)
                      .+++++..+|..++..+.           -+.+...++|++..|+..+...       ++       .   +.+..+++|
T Consensus       130 L~~D~d~~VR~~aA~~l~-----------~~~l~~l~~D~d~~VR~~aa~~-------l~-------~---~ll~~ll~D  181 (244)
T 1lrv_A          130 MAADRDYLVRAYVVQRIP-----------PGRLFRFMRDEDRQVRKLVAKR-------LP-------E---ESLGLMTQD  181 (244)
T ss_dssp             GTTCSSHHHHHHHHHHSC-----------GGGGGGTTTCSCHHHHHHHHHH-------SC-------G---GGGGGSTTC
T ss_pred             HHcCCCHHHHHHHHHhcC-----------HHHHHHHHcCCCHHHHHHHHHc-------CC-------H---HHHHHHHcC
Confidence            467777788888887421           1234455689999999877775       22       1   345567788


Q ss_pred             CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHH
Q psy10471        194 RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE  249 (318)
Q Consensus       194 ~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~  249 (318)
                      .+..||..++..+   ..               +.+...+.|++..||..+...++
T Consensus       182 ~d~~VR~aaa~~l---~~---------------~~L~~Ll~D~d~~VR~~aa~~l~  219 (244)
T 1lrv_A          182 PEPEVRRIVASRL---RG---------------DDLLELLHDPDWTVRLAAVEHAS  219 (244)
T ss_dssp             SSHHHHHHHHHHC---CG---------------GGGGGGGGCSSHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHhC---CH---------------HHHHHHHcCCCHHHHHHHHHcCC
Confidence            8999998888752   10               22345567788889998888888

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=96.38  E-value=0.13  Score=43.68  Aligned_cols=107  Identities=9%  Similarity=0.026  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC---HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccC
Q psy10471        159 NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE  235 (318)
Q Consensus       159 ~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~---~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d  235 (318)
                      ..+++.+..+.+.-.....+|+++++|.+..++-.+.   ..+|..|++.++.++...+. .....-.++...+...+.|
T Consensus        64 ~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~-~y~~L~~RI~~tl~k~l~d  142 (196)
T 4atg_A           64 KTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSR-SYKTLAPRVLKTLKGVWMD  142 (196)
T ss_dssp             HHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTT-TSTTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCc-cCchHHHHHHHHHHHHHcC
Confidence            3344444444443344688999999999999995432   37999999999999888742 2233334444444444555


Q ss_pred             CChHHHHHHHHHHHHHHHHcChhhHHHhHHHHh
Q psy10471        236 TSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL  268 (318)
Q Consensus       236 ~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l  268 (318)
                      +..++ .+.-+++..+. ++|++...-.++|-+
T Consensus       143 p~~~l-~t~YGAi~GL~-~lG~~~vr~~llP~l  173 (196)
T 4atg_A          143 PNRSE-DSQYGALYCLS-ILSKNVVNTVIREHA  173 (196)
T ss_dssp             TTSCH-HHHHHHHHHHH-HHCHHHHHTHHHHHH
T ss_pred             CCCCh-HHHHHHHHHHH-HhHHHHHHHhhhcCH
Confidence            54333 55677777764 889988877777777

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=95.75  E-value=0.16  Score=51.22  Aligned_cols=186  Identities=12%  Similarity=0.042  Sum_probs=102.6

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCCh---HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC---h-hhHHHHHHH
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHL---KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS---A-REWMRICFE   75 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l---~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~---~-~~~~~il~~   75 (318)
                      .+|..|..+|+.|+.  +..++.-+   +.+.+++.++|.|++..||.+|+.+|+.|+...|+.+.   + ..+++-+..
T Consensus        49 ~~r~~A~~al~~l~~--~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~~L~~  126 (684)
T 4gmo_A           49 KSRTTAAGAIANIVQ--DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLTAIEH  126 (684)
T ss_dssp             SHHHHHHHHHHHHTT--SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc--CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHHHHHH
Confidence            578999999999986  43333322   23445567889999999999999999999987764331   1 222222222


Q ss_pred             HHHH----hhh--------chHH------HHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccch---hhHHHHH
Q psy10471         76 LLEL----LKA--------HKKA------IRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQER---QNRVCTT  127 (318)
Q Consensus        76 Ll~~----L~d--------~~~~------vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~---~~R~~~~  127 (318)
                      +++-    ++.        ....      +-..++..+..+++.-+.       ...++.|+..|...+.   ..+..++
T Consensus       127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~  206 (684)
T 4gmo_A          127 AAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAI  206 (684)
T ss_dssp             HHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred             HHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHH
Confidence            2211    110        0011      112244555556542221       1346667777643332   5777788


Q ss_pred             HHHHHHHhhcC----------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-ccccchh-----hhHHHHHHHH
Q psy10471        128 VAIAIVAETCS----------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE-MGKDYIY-----AVTPLLEDAL  191 (318)
Q Consensus       128 ~ai~~i~~~~~----------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~-~~~~yl~-----~iiP~l~~~l  191 (318)
                      .++..+++.-.          ...++..++..-+.. ...+..++..+..+|..+.. ....|..     .++|.+...+
T Consensus       207 ~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~-~~~~~la~giL~Ni~~~~~~~d~s~~~~~~~~~~li~~l~~~l  285 (684)
T 4gmo_A          207 SCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT-DPRAVMACGVLHNVFTSLQWMDHSPGKDGACDAILIPTLTRAL  285 (684)
T ss_dssp             HHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS-CTTHHHHHHHHHHHHHHHTCBTTBCCGGGCSGGGTHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC-cHHHHHHHHHHHhHhhhhhhhhcchhhHHHHHHHHHHhhhhhH
Confidence            88877664321          123444444433332 23345566667777766543 3344442     3567776665

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=94.68  E-value=0.56  Score=50.38  Aligned_cols=102  Identities=9%  Similarity=0.041  Sum_probs=67.0

Q ss_pred             chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC---HHHHHHHHHHHHHHhhhhcCCCc-hhHHHHHHHhhh
Q psy10471        155 LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD---LVHRQTACATIKHMALGVYGFGC-EDALTHLLNYVW  230 (318)
Q Consensus       155 ~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~---~~~R~~a~~~i~~la~~~~~~~~-~~~i~hll~~l~  230 (318)
                      .+++..++.++..+++..+..+.+|++++...+..++....   ..-+..+..++..++..+..... ...+..+++-+.
T Consensus       598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~  677 (1204)
T 3a6p_A          598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA  677 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            46789999999999999888999999999999999886433   66666777777666544321111 122444444443


Q ss_pred             hcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471        231 PNIFETSPHLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       231 ~~i~d~~~~vr~~ii~~i~~i~~alG~~~  259 (318)
                      ...  .+++++. .+..-...+..+|.+.
T Consensus       678 ~~w--~~~~~~~-~~s~~~~f~~~~G~~~  703 (1204)
T 3a6p_A          678 SIW--LSQDMHR-VLSDVDAFIAYVGTDQ  703 (1204)
T ss_dssp             HHH--SCHHHHH-HHHCHHHHHHHHTSSC
T ss_pred             HHH--ccHHHHH-hhcCHHHHHHHhCCCC
Confidence            333  4456665 4555567777777543

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=94.61  E-value=0.61  Score=49.44  Aligned_cols=175  Identities=8%  Similarity=0.018  Sum_probs=105.1

Q ss_pred             CChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q psy10471         25 PHLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY   97 (318)
Q Consensus        25 P~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~   97 (318)
                      -+-.+++..+.+++++    .++.+|.+|+.++|.++....   +.-..+...++...+.+.+...+...+..+++++|.
T Consensus       387 ~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          387 QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence            3456677777777776    468899999999999886432   111123344455545555566556678889999998


Q ss_pred             HHhhhCHHHHHHHHHHhhcc-----cch--hhHHHHHHHHHHHHhhcCcccchHHHHHHhc--CCcchHHHHHHHHHHHH
Q psy10471         98 IAKAIGPHDVLATLLNNLKV-----QER--QNRVCTTVAIAIVAETCSPFTVLPALMNEYR--VPELNVQNGVLKALSFL  168 (318)
Q Consensus        98 la~~igp~~~l~~Ll~~Lk~-----~~~--~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~--d~~~~v~~~vl~al~~i  168 (318)
                      ++.   | ..++.|++.+..     .+.  +.|..++.|+..++. -.|-.+-+.|+..+.  ..+.++|.+++..+...
T Consensus       467 ~g~---p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~-~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t  541 (1056)
T 1lsh_A          467 AGQ---P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK-RDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFES  541 (1056)
T ss_dssp             HTC---G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             cCC---h-hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh-hchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence            874   2 256677777642     222  466667766655542 235577888999994  45678887666655421


Q ss_pred             HHHHccccccchhhhHHHHHHH-HhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        169 FEYIGEMGKDYIYAVTPLLEDA-LMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       169 ~~~lg~~~~~yl~~iiP~l~~~-l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      .        |=.. ++-.+... ..+.+..++....+.|..++..-
T Consensus       542 ~--------P~~~-~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~  578 (1056)
T 1lsh_A          542 K--------PSVA-LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS  578 (1056)
T ss_dssp             C--------CCHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             C--------cCHH-HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence            1        1111 11222222 23455666666666665555543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=93.15  E-value=2.3  Score=42.31  Aligned_cols=175  Identities=15%  Similarity=0.117  Sum_probs=107.0

Q ss_pred             cCCChHhHHHHHHhhcCCCC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHH
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA--HKKAIRRATVNTFGYIA   99 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d--~~~~vR~~av~~lg~la   99 (318)
                      -.+-..+.++.+..-+++.+ ..=||+|+..|-.++......+. ..=+   ..|++.|++  ....+=+.+++|+..+-
T Consensus        15 ~~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-~~~l---~~li~~L~~d~~D~e~v~~~LetL~~l~   90 (651)
T 3grl_A           15 PQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-IQAM---EHLIHVLQTDRSDSEIIGYALDTLYNII   90 (651)
T ss_dssp             ---CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-HHTH---HHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-hhhH---HHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            45667788888888888766 66799999999999875443321 1212   234455555  33445566788875543


Q ss_pred             hhhCHHHHHHHHHHhhcccchhhHHHHHHHHH-HHHhhcC-cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471        100 KAIGPHDVLATLLNNLKVQERQNRVCTTVAIA-IVAETCS-PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK  177 (318)
Q Consensus       100 ~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~-~i~~~~~-p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~  177 (318)
                      ..-+..+- ..   +   ...+     ..-++ ..++.+- ...-++.|++.++..+-.++-..++.+..++.+=+.+..
T Consensus        91 ~~~~~~~~-~~---~---~~~~-----~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q  158 (651)
T 3grl_A           91 SNDEEEEV-EE---N---STRQ-----SEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQ  158 (651)
T ss_dssp             CCC--------------------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCcccc-cc---c---cccc-----chHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHH
Confidence            21111000 00   0   0000     00001 0111111 124567788888888888898999999999877555444


Q ss_pred             cch---hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        178 DYI---YAVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       178 ~yl---~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      .++   |.=+|.+.+++.+....+|-.+..++..++..-
T Consensus       159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n  197 (651)
T 3grl_A          159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSN  197 (651)
T ss_dssp             HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCC
Confidence            444   567899999999999999999999998887654

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=92.92  E-value=0.9  Score=38.42  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhccCcCCChHhHHHHHHhhcCC--CC-HHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch-
Q psy10471          9 IKIVQQIAILMGCAILPHLKNLVEIIEHGLVD--EQ-QKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK-   84 (318)
Q Consensus         9 l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d--~~-~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~-   84 (318)
                      ++++..|..--.-.+.||+.+++|.++..+-.  -. ...|+-|++.+++++...+..- +.--.++...+.+.+.|++ 
T Consensus        67 m~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y-~~L~~RI~~tl~k~l~dp~~  145 (196)
T 4atg_A           67 IALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSY-KTLAPRVLKTLKGVWMDPNR  145 (196)
T ss_dssp             HHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTS-TTHHHHHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccC-chHHHHHHHHHHHHHcCCCC
Confidence            44444444422226999999999998765432  12 2789999999999998766432 2334567777778887743 


Q ss_pred             -HHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhc
Q psy10471         85 -KAIRRATVNTFGYIAKAIGPHDVLATLLNNLK  116 (318)
Q Consensus        85 -~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk  116 (318)
                       ...+-=|+.++..    +|+..+-..++.+++
T Consensus       146 ~l~t~YGAi~GL~~----lG~~~vr~~llP~l~  174 (196)
T 4atg_A          146 SEDSQYGALYCLSI----LSKNVVNTVIREHAE  174 (196)
T ss_dssp             CHHHHHHHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred             ChHHHHHHHHHHHH----hHHHHHHHhhhcCHH
Confidence             3455557777664    566533333445544

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=92.83  E-value=2.7  Score=44.54  Aligned_cols=173  Identities=14%  Similarity=0.123  Sum_probs=105.2

Q ss_pred             hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC------HHH----HHHHHHHhhcccchhhHHHHHHHHHHHHh
Q psy10471         67 REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG------PHD----VLATLLNNLKVQERQNRVCTTVAIAIVAE  135 (318)
Q Consensus        67 ~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig------p~~----~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~  135 (318)
                      ++++..+..|++.-+. +++.+|..++=++|.++...-      |.+    +.+.|...+...+...+.....|+|.++.
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            4555555544422221 345688999999988876421      222    23333344443333445555666655543


Q ss_pred             hcCcccchHHHHHHhcC-----Cc--chHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHh--cCCHHHHHHHHHHH
Q psy10471        136 TCSPFTVLPALMNEYRV-----PE--LNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALM--DRDLVHRQTACATI  206 (318)
Q Consensus       136 ~~~p~~vip~L~~~~~d-----~~--~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~--~~~~~~R~~a~~~i  206 (318)
                         | ..++.++..+..     .+  ..++.+++.|+..+.+       .+=..+-+.+..++.  ..++.+|..|..++
T Consensus       470 ---p-~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~-------~~p~~v~~il~~i~~n~~e~~EvRiaA~~~L  538 (1056)
T 1lsh_A          470 ---P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK-------RDPRKVQEIVLPIFLNVAIKSELRIRSCIVF  538 (1056)
T ss_dssp             ---G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG-------TCHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ---h-hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh-------hchHHHHHHHHHHhcCCCCChHHHHHHHHHH
Confidence               3 356666665432     12  3466677777665542       122346677777774  55689999999888


Q ss_pred             HHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471        207 KHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       207 ~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~  259 (318)
                      -...      .....++++...+.   .|++.+|+..+...|..++..-.+..
T Consensus       539 m~t~------P~~~~l~~ia~~l~---~E~~~QV~sfv~S~l~sla~s~~P~~  582 (1056)
T 1lsh_A          539 FESK------PSVALVSMVAVRLR---REPNLQVASFVYSQMRSLSRSSNPEF  582 (1056)
T ss_dssp             HHTC------CCHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHC------cCHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHhcCCcch
Confidence            4432      33356677777764   45899999999999999999887744

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.37  E-value=8.1  Score=37.09  Aligned_cols=178  Identities=14%  Similarity=0.067  Sum_probs=106.9

Q ss_pred             cCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhh
Q psy10471         23 ILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAI  102 (318)
Q Consensus        23 ~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~i  102 (318)
                      +..+...-.. |+...+- ++...+-|+.-|+.+....++.-     ..-+..++++..|....||..|++.+..+++.-
T Consensus        24 ~~~~~~~y~~-Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~   96 (507)
T 3u0r_A           24 VGQHKDAYQV-ILDGVKG-GTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDEDVSIRRQAIKELPQFATGE   96 (507)
T ss_dssp             GGGGHHHHHH-HHHGGGS-CHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTT
T ss_pred             ccccHHHHHH-HHHhcCC-CHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhh
Confidence            4445554433 3333333 68889999999999888655422     223445667778888889999999999999872


Q ss_pred             CHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccc-cccch-
Q psy10471        103 GPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEM-GKDYI-  180 (318)
Q Consensus       103 gp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~-~~~yl-  180 (318)
                      -...+.+.|...|..++...+..|-.++..+... .|...+.++.+.....+..+|.-+++-|..-+..++.. ...-. 
T Consensus        97 ~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E  175 (507)
T 3u0r_A           97 NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM-DAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE  175 (507)
T ss_dssp             CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHH
T ss_pred             hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHH
Confidence            2346778888888877777777777777654322 22334444555444456677766555444433333321 11111 


Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy10471        181 YAVTPLLEDALMDRDLVHRQTACATIKH  208 (318)
Q Consensus       181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~  208 (318)
                      ..|+-.+..++.+-+..-.......++.
T Consensus       176 ~~i~~~ikK~L~DVT~~EF~L~m~lL~~  203 (507)
T 3u0r_A          176 ELILTESKKVLEDVTGEEFVLFMKILSG  203 (507)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            2255566666666665554545555533

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19

Probab=91.12  E-value=8.6  Score=34.87  Aligned_cols=142  Identities=10%  Similarity=0.045  Sum_probs=90.5

Q ss_pred             HHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHH----h---cCCHHHHHHHHHHHHHHhhhhcCCC
Q psy10471        146 LMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL----M---DRDLVHRQTACATIKHMALGVYGFG  217 (318)
Q Consensus       146 L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l----~---~~~~~~R~~a~~~i~~la~~~~~~~  217 (318)
                      .+..|+...+..| ..++..++.++..+|..+.++++.|+..+...-    +   +.-|.||.....++..+...|-..=
T Consensus        78 VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al  157 (321)
T 1w9c_A           78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF  157 (321)
T ss_dssp             HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHH
Confidence            4456666666666 679999999999999999998887766554333    2   2349999999999999887663110


Q ss_pred             ---chhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHc------ChhhHHHhHHHHhcc--------ccccchHHHH
Q psy10471        218 ---CEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVAL------GPVRILQYVLQGLFH--------PARKVRDVYW  280 (318)
Q Consensus       218 ---~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~al------G~~~~~~~vl~~l~~--------~a~~~r~~~w  280 (318)
                         ..+.+.-+..-+.=.++++.+++-.+-++.+-.+-..+      ..+++..|.++.+.|        +++..-..+.
T Consensus       158 ~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~Hk~gF~~q~  237 (321)
T 1w9c_A          158 LAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHA  237 (321)
T ss_dssp             HHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchhhccHHHHH
Confidence               12333334444444577888887766555444333333      335688888888743        3343444555


Q ss_pred             HHHHHhh
Q psy10471        281 KIYNSLY  287 (318)
Q Consensus       281 ~i~~~~~  287 (318)
                      .++..+.
T Consensus       238 ~iL~~lf  244 (321)
T 1w9c_A          238 SILAYMF  244 (321)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555553

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=86.99  E-value=3.6  Score=36.20  Aligned_cols=71  Identities=13%  Similarity=0.156  Sum_probs=51.2

Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      ..++++++|.+..+..+++..+|++.+..++.....     +.+.....++-+...+.|+++.|.+.++.+...+-
T Consensus        48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-----k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-----KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            568899999999988888999999999999877532     22333333333333345688999998888777664

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=86.87  E-value=15  Score=32.09  Aligned_cols=133  Identities=12%  Similarity=0.093  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |-..|+-+.+|+...  + --.++++++-++++..|++..+|+-.+.-|++.+..-     ..-....+..|..+++|+.
T Consensus        32 kl~~L~qa~el~~~~--d-p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k-----~~l~~~~l~~L~~Ll~d~d  103 (257)
T 3gs3_A           32 KCELLAKVQETVLGS--C-AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK-----VELLPHVINVVSMLLRDNS  103 (257)
T ss_dssp             HHHHHHHHHHHHTTT--T-GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHHHcc--C-HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCC
Confidence            445555555555532  1 2367899999999888989999999999999988542     2233344555667778877


Q ss_pred             HHHHHHHHHHHHHHHhhh------CHH-----HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC
Q psy10471         85 KAIRRATVNTFGYIAKAI------GPH-----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP  153 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~i------gp~-----~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~  153 (318)
                      +.|-+.++.+++.+=...      .|.     +-....|..+|+                           ..++.+...
T Consensus       104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~---------------------------~Il~~~~s~  156 (257)
T 3gs3_A          104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKA---------------------------QILDMIDNE  156 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH---------------------------HHHHGGGSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHH---------------------------HHHHHHccC
Confidence            888888888876643211      000     112222223332                           155566667


Q ss_pred             cchHHHHHHHHHHHHHHHH
Q psy10471        154 ELNVQNGVLKALSFLFEYI  172 (318)
Q Consensus       154 ~~~v~~~vl~al~~i~~~l  172 (318)
                      +..++..++|-+..+.-..
T Consensus       157 n~gvkl~~iKF~e~vIl~q  175 (257)
T 3gs3_A          157 NDGIRTNAIKFLEGVVVLQ  175 (257)
T ss_dssp             CHHHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHHHHHHhh
Confidence            7888988888888877543

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=84.19  E-value=2.6  Score=44.32  Aligned_cols=164  Identities=13%  Similarity=0.025  Sum_probs=90.1

Q ss_pred             CCChHhHHHHHHh----hcC-CCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch-HHHHHHHHHHHHH
Q psy10471         24 LPHLKNLVEIIEH----GLV-DEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK-KAIRRATVNTFGY   97 (318)
Q Consensus        24 ~P~l~~l~~~l~~----~l~-d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~-~~vR~~av~~lg~   97 (318)
                      .|+.++.++.++.    ..+ +.++ .|.+++..+--+.-.---.++..+-..|...++++|.|++ ..||..|-.+|+-
T Consensus       792 ~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsg  870 (997)
T 1vsy_5          792 MPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSD  870 (997)
T ss_dssp             SCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4555555555444    444 3568 8888887766555432223334555677777888899999 9999999999988


Q ss_pred             HHhhhC-HHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc
Q psy10471         98 IAKAIG-PHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG  176 (318)
Q Consensus        98 la~~ig-p~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~  176 (318)
                      +.. ++ +......++..++..-.+.+                  ..+.+-+.. ..+...+.+.+-+++.+..+..-.+
T Consensus       871 ll~-c~~~~~~~~~li~~f~~~~~~~~------------------~~~~~~~~~-~~~~~~rH~aVLgL~AlV~a~Py~v  930 (997)
T 1vsy_5          871 IVH-NWKEEQPLLSLIERFAKGLDVNK------------------YTSKERQKL-SKTDIKIHGNVLGLGAIISAFPYVF  930 (997)
T ss_dssp             HHH-SCCSHHHHHHHHHHHTTSSTTTS------------------SCHHHHHHH-HHHCHHHHHHHHHHHHHHTTCSCCS
T ss_pred             HHH-cCCchhhHHHHHHHHHHHHhhcc------------------ccccccccc-chHHHHHHHHHHHHHHHHhhCCCCC
Confidence            875 45 63223344444432110000                  000000000 0001233556666777776654444


Q ss_pred             --ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10471        177 --KDYIYAVTPLLEDALMDRDLVHRQTACATIKHM  209 (318)
Q Consensus       177 --~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~l  209 (318)
                        .+|+|+++..+.+...++ ..++.++-.+++.-
T Consensus       931 P~P~w~P~~l~~La~~~~~~-~~i~~tvk~tlseF  964 (997)
T 1vsy_5          931 PLPPWIPKNLSNLSSWARTS-GMTGNAAKNTISEF  964 (997)
T ss_dssp             SCCTHHHHHHHHHHTTSSSC-SSHHHHTHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhCCC-CchHHHHHHHHHHH
Confidence              456666665555555553 34777666666543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=83.88  E-value=8.1  Score=38.49  Aligned_cols=72  Identities=8%  Similarity=-0.017  Sum_probs=51.4

Q ss_pred             hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH---HHHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        181 YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT---HLLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       181 ~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~---hll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      +.-++.+.+++...+..+|-.+.++++.+...-. ....+.+.   .=.+.++..+.|....+|..++..+..++.
T Consensus       121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~-~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~  195 (651)
T 3grl_A          121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLG-PQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTR  195 (651)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSH-HHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCc-HHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence            4567899999999999999999999988876532 11122222   123455677777888889888888887765

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=83.22  E-value=43  Score=34.18  Aligned_cols=73  Identities=14%  Similarity=0.280  Sum_probs=48.3

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHH
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGP---EYVSAREWMRICFELLELLKA---HKKAIRRATVNTFGYIA   99 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~Ll~~L~d---~~~~vR~~av~~lg~la   99 (318)
                      .+.-++|.+...+-..+..+...+..++..+|.-.+   +.+    +++++..+-..|.+   ....--.++++++..++
T Consensus       336 fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lV----lP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~  411 (799)
T 1vsy_4          336 IVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLI----YDKILIDLYDTLADQFINSRHRIISSLKQFTRVI  411 (799)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHH----HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCcccee----hHHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence            456677777778888899999999999999999666   443    33344444344444   22333455788887766


Q ss_pred             hhh
Q psy10471        100 KAI  102 (318)
Q Consensus       100 ~~i  102 (318)
                      ..+
T Consensus       412 r~l  414 (799)
T 1vsy_4          412 RFI  414 (799)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=81.16  E-value=11  Score=35.03  Aligned_cols=69  Identities=10%  Similarity=0.039  Sum_probs=39.3

Q ss_pred             cchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHH
Q psy10471        178 DYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGL  251 (318)
Q Consensus       178 ~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i  251 (318)
                      ..+++++|.+..+-.+.+..+|++.++.|+.....     +.+.+.+.++.+...+.|+++.|.+.++.+...+
T Consensus        59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-----~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl  127 (386)
T 3o2t_A           59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-----DIELLLKLIANLNMLLRDENVNVVKKAILTMTQL  127 (386)
T ss_dssp             GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            45566677777776677777777777776655432     1222333333333333456666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	318
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	4e-20
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-05
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	3e-04

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 4e-20
 Identities = 38/204 (18%), Positives = 75/204 (36%), Gaps = 13/204 (6%)

Query: 17  ILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFEL 76
           +     I    ++L+  I     D + +V+   I+ +  +A +        +   +C   
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW 449

Query: 77  LELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQN----RVCTTVAIAI 132
           L     H  AIR A  +    + +  G     AT++  +           R+ T   I +
Sbjct: 450 LV---DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506

Query: 133 VAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
           ++E C        +LP ++     P  NV+  V K+L  +   +          V P+LE
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILE 564

Query: 189 DALMDRDLVHRQTACATIKHMALG 212
               D+D+  +  A   +  ++L 
Sbjct: 565 KLTQDQDVDVKYFAQEALTVLSLA 588

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 33/205 (16%), Positives = 65/205 (31%), Gaps = 13/205 (6%)

Query: 76  LLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNL-KVQERQNRVCTTVA----- 129
           L++ L+     +R  ++     IA A+G     + LL  L      ++ V   +A     
Sbjct: 15  LIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGT 74

Query: 130 -IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLE 188
              +V        +LP L +   V E  V++  +++L  +         D      PL++
Sbjct: 75  FTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SDLEAHFVPLVK 132

Query: 189 DALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAV 248
                     R +AC          Y          L  Y      + +P + +A    +
Sbjct: 133 RLAGGDWFTSRTSACGLFSVC----YPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 188

Query: 249 EGLRVALGPVRILQYVLQGLFHPAR 273
                 L    +   ++    + A 
Sbjct: 189 GEFAKVLELDNVKSEIIPMFSNLAS 213

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 24/246 (9%), Positives = 83/246 (33%), Gaps = 12/246 (4%)

Query: 10   KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW 69
            K V  +           +   ++ +++        ++   +  +G +      ++     
Sbjct: 798  KCVAALTRACPKEGPAVVGQFIQDVKN--SRSTDSIRLLALLSLGEVG----HHIDLSGQ 851

Query: 70   MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129
            + +   +LE   +  + ++ A     G I+      + L  +L  +  Q ++ +     +
Sbjct: 852  LELKSVILEAFSSPSEEVKSAASYALGSIS-VGNLPEYLPFVLQEITSQPKR-QYLLLHS 909

Query: 130  IAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLED 189
            +  +  + S   + P + N + +   + +       + + E +G++       + P L+ 
Sbjct: 910  LKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKG 969

Query: 190  ALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVE 249
             L+      R +    +K   +  +    +  L + +      + +   ++ +    A+ 
Sbjct: 970  YLISGSSYARSSVVTAVKFT-ISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV---ALV 1025

Query: 250  GLRVAL 255
                A 
Sbjct: 1026 TFNSAA 1031

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 10   KIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREW 69
            ++    +  +G   + +L   +  +   +   Q K Q   +  +  I             
Sbjct: 868  EVKSAASYALGSISVGNLPEYLPFVLQEI-TSQPKRQYLLLHSLKEIISSASVVGLKPYV 926

Query: 70   MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVA 129
              I   LL+  +  ++  R       G +   I P  +L  L   L       R     A
Sbjct: 927  ENIWALLLKHCECAEEGTRNVVAECLGKLTL-IDPETLLPRLKGYLISGSSYARSSVVTA 985

Query: 130  IA-IVAETCSPFT-----VLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAV 183
            +   +++   P        +   +     P+LNV+   L   +        + +D +  V
Sbjct: 986  VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045

Query: 184  TPLLEDALMDRDLVHRQTACATIKH 208
             P L +    R  + R+      KH
Sbjct: 1046 LPHLYNETKVRKELIREVEMGPFKH 1070

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 35/274 (12%), Positives = 72/274 (26%), Gaps = 36/274 (13%)

Query: 9   IKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSARE 68
            +    I+  +   +   +      +        Q++Q N + ++  +  + P  V    
Sbjct: 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA 595

Query: 69  WMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH------DVLATLLNNLKVQERQN 122
            M +      L K     I          +A ++G             LL  L   +   
Sbjct: 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV 655

Query: 123 RVCTTVAIAIVAETC----SPF--TVLPALMNEYRVPELN--VQNGVLKALSFLFEYIGE 174
            +     IA ++ +       +   ++  L      P     ++  VL     +   IG 
Sbjct: 656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715

Query: 175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF 234
               Y+  +  L   A   +                                  V   + 
Sbjct: 716 DFIPYLNDIMALCVAAQNTKPENGT--------------------LEALDYQIKVLEAVL 755

Query: 235 ETSPHLVQAFMDAVEGLRVALGPVRILQYVLQGL 268
           +    +V    D  E L   +G   I Q++ Q  
Sbjct: 756 DAYVGIVAGLHDKPEALFPYVGT--IFQFIAQVA 787

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 2   SSDKNLGIKIVQQIAILMGCAILPHLKN----LVEIIEHGLVDEQQKVQENCIDLVGRIA 57
            S  N     + +I+I MG  + P++      LVEII     +  + + EN    +GR+ 
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRP--NTPKTLLENTAITIGRLG 777

Query: 58  DRGPEYVS 65
              P+ V+
Sbjct: 778 YVCPQEVA 785

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	318
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.82
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.78
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.74
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.67
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.58
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.46
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.44
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.34
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.17
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.17
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.15
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.13
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.01
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.99
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	98.92
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.88
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.7
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.65
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.61
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.6
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	98.59
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.29
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	98.27
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.15
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.0
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.81
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.76
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	97.62
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	96.66
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.91
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.09
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	87.26

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.4e-19  Score=179.23  Aligned_cols=298  Identities=16%  Similarity=0.172  Sum_probs=218.3

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      ..|++++.++|.++.-....+.|++++++|.+++.++|++|.||.+|+++||+++++..+......+.+++..+++.+.|
T Consensus       410 ~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d  489 (888)
T d1qbkb_         410 VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD  489 (888)
T ss_dssp             HHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSS
T ss_pred             HHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcC
Confidence            46889999999988722236999999999999999999999999999999999998765544234456677778888899


Q ss_pred             chHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc------c--cchHHHHH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP------F--TVLPALMN  148 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p------~--~vip~L~~  148 (318)
                      +++.||.+|+++|+.+.+..++    +  .+++.++..++..+...+.....+++.+++.+++      +  .++|.+..
T Consensus       490 ~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~  569 (888)
T d1qbkb_         490 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQ  569 (888)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence            8899999999999999887764    2  5677777777655555666666677665544332      1  33343333


Q ss_pred             HhcC------------------------------------------------------------CcchHHHHHHHHHHHH
Q psy10471        149 EYRV------------------------------------------------------------PELNVQNGVLKALSFL  168 (318)
Q Consensus       149 ~~~d------------------------------------------------------------~~~~v~~~vl~al~~i  168 (318)
                      .+..                                                            ++.+....++..++.+
T Consensus       570 ~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l  649 (888)
T d1qbkb_         570 KWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGL  649 (888)
T ss_dssp             HHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHH
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            3211                                                            1122334456677788


Q ss_pred             HHHHccccccchh--hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHH
Q psy10471        169 FEYIGEMGKDYIY--AVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD  246 (318)
Q Consensus       169 ~~~lg~~~~~yl~--~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~  246 (318)
                      ++.+|..+.+|+.  .++|.+...+.+.++.+|+.+..+++.++..+. ......+..+++.+...+.+++.+++.+++.
T Consensus       650 ~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~-~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~  728 (888)
T d1qbkb_         650 AEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATW  728 (888)
T ss_dssp             HHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred             HHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence            8888888888885  388999999999999999999999999988763 3445677788888889998899999999999


Q ss_pred             HHHHHHHHcChhh--HHHhHHHHh----ccccc--cchHHHHHHHHHhhccccccccccCCCC
Q psy10471        247 AVEGLRVALGPVR--ILQYVLQGL----FHPAR--KVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       247 ~i~~i~~alG~~~--~~~~vl~~l----~~~a~--~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      +++.++..+|.++  +.+.+++.+    -++..  .+++.-......+...+.+.+.||+|.+
T Consensus       729 ~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~  791 (888)
T d1qbkb_         729 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQF  791 (888)
T ss_dssp             HHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHH
Confidence            9999999999753  333334333    34332  2444333344555556667888888765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.8e-19  Score=172.62  Aligned_cols=251  Identities=14%  Similarity=0.187  Sum_probs=205.4

Q ss_pred             hHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHH
Q psy10471         27 LKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHD  106 (318)
Q Consensus        27 l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~  106 (318)
                      ..++++.+..+++|++|.||++++.++|.+++..+......++.|++.   +.++|++..||..|+.+++.+++.+++..
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~---~l~~d~~~~vr~~a~~~l~~i~~~~~~~~  238 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS---NLASDEQDSVRLLAVEACVNIAQLLPQED  238 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHH---HHHTCSCHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH---HHhcCCchhhHHHHHHHHHHhhccCCHHH
Confidence            356788888899999999999999999999997664321345555544   55689999999999999999999888753


Q ss_pred             ----HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcccc--
Q psy10471        107 ----VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMG--  176 (318)
Q Consensus       107 ----~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~--  176 (318)
                          +++.+.+.+++++.++|..++.+++.++...++    ..++|.+.+.++|++.+++..+++++..+++.++...  
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~  318 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE  318 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhh
Confidence                455566666677778999999999988766654    3789999999999999999999999999999887643  


Q ss_pred             ccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        177 KDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       177 ~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                      ..+++.++|.+.+.+.+.+..+|+.++..+..++..+   |.++...++++.+...+.|+++++|..++.+++.+...+|
T Consensus       319 ~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~---~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~  395 (588)
T d1b3ua_         319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL---GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG  395 (588)
T ss_dssp             HHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH---CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred             hhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc---chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc
Confidence            3466899999999999999999999999888887766   6677788888888888889999999999999999999999


Q ss_pred             hhhHHHhHHHHhcc----ccccchHHHHHHH
Q psy10471        257 PVRILQYVLQGLFH----PARKVRDVYWKIY  283 (318)
Q Consensus       257 ~~~~~~~vl~~l~~----~a~~~r~~~w~i~  283 (318)
                      .+.+.+.++|.+.+    ++.++|......+
T Consensus       396 ~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l  426 (588)
T d1b3ua_         396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYM  426 (588)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            98888888888743    4445666443333

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.2e-17  Score=156.62  Aligned_cols=276  Identities=15%  Similarity=0.131  Sum_probs=220.1

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhhhc
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLKAH   83 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~d~   83 (318)
                      |..+.+++++++...|...  ..+.++|.+...++|.++.||..|+++++.++...+..... ..+..++..+.+.++|.
T Consensus       259 r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~  336 (588)
T d1b3ua_         259 RYMVADKFTELQKAVGPEI--TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA  336 (588)
T ss_dssp             HHHHHHTHHHHHHHHCHHH--HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred             HHHHHHhHHHHHHHhhhhh--hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC
Confidence            6677888888887666432  23578899999999999999999999999999877654322 23344555566777888


Q ss_pred             hHHHHHHHHHHHHHHHhhhCHHH----HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc----ccchHHHHHHhcCCcc
Q psy10471         84 KKAIRRATVNTFGYIAKAIGPHD----VLATLLNNLKVQERQNRVCTTVAIAIVAETCSP----FTVLPALMNEYRVPEL  155 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~igp~~----~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p----~~vip~L~~~~~d~~~  155 (318)
                      +..+|..+..+++.++..+|...    +++.+...+++++..+|..+..+++.+....++    -.++|.+.+..+|++.
T Consensus       337 ~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~  416 (588)
T d1b3ua_         337 NQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW  416 (588)
T ss_dssp             CHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSH
T ss_pred             ChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccH
Confidence            89999999999999998888753    456666777887778888888888777766654    2688899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccC
Q psy10471        156 NVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFE  235 (318)
Q Consensus       156 ~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d  235 (318)
                      .++..+++++..+.+.+|..+  |.+.+.|.+...+.+....+|..++.+++.++...   |.+.....+.+.+.....+
T Consensus       417 ~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~---~~~~~~~~i~~~l~~~~~~  491 (588)
T d1b3ua_         417 RVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF---GKEWAHATIIPKVLAMSGD  491 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHTHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHHHhcC
Confidence            999999999999999888643  45678899999999999999999999999998877   5555556677887777888


Q ss_pred             CChHHHHHHHHHHHHHHHHcChhhHHHhHHHHhcc----ccccchHHHHHHHHHhh
Q psy10471        236 TSPHLVQAFMDAVEGLRVALGPVRILQYVLQGLFH----PARKVRDVYWKIYNSLY  287 (318)
Q Consensus       236 ~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~l~~----~a~~~r~~~w~i~~~~~  287 (318)
                      ++...|.+++.+++.+....+.+.+.++++|.+++    +...||..-.+.+..+.
T Consensus       492 ~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~  547 (588)
T d1b3ua_         492 PNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG  547 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            89999999999999999999998888888777743    44568877777665554

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-15  Score=155.06  Aligned_cols=291  Identities=16%  Similarity=0.160  Sum_probs=197.6

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |..+..+++.++...|..+   ++.+++.+...+++++|.+|++|+.++|.+++++.+.+ .+.+..++..+++.++|++
T Consensus       374 r~~a~~~L~~l~~~~~~~i---l~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~-~~~l~~li~~l~~~l~d~~  449 (888)
T d1qbkb_         374 RKCSAAALDVLANVYRDEL---LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLSDKK  449 (888)
T ss_dssp             HHHHHHHSTTTTTTCCSSS---HHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHH-TTTHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHhhHhhhhHHHH---HHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHh-cccchhhhHHHHHhccCCC
Confidence            6677888888888777544   56788888899999999999999999999998765443 2344556666778889999


Q ss_pred             HHHHHHHHHHHHHHHhhhCH-----H--HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC----cc--cchHHHHHHhc
Q psy10471         85 KAIRRATVNTFGYIAKAIGP-----H--DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS----PF--TVLPALMNEYR  151 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp-----~--~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~----p~--~vip~L~~~~~  151 (318)
                      +.||..|++++|++++.+.+     +  .+++.+++.+.+++.++|..+..|++.+.+.++    |+  .+++.+...+.
T Consensus       450 ~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~  529 (888)
T d1qbkb_         450 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS  529 (888)
T ss_dssp             HHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999876543     1  467888888888777888889999988877665    44  56777777777


Q ss_pred             CCcchHHHHHHHHHHHHHHHHcccc--ccchhhhHHHHHHHHhc------------------------------------
Q psy10471        152 VPELNVQNGVLKALSFLFEYIGEMG--KDYIYAVTPLLEDALMD------------------------------------  193 (318)
Q Consensus       152 d~~~~v~~~vl~al~~i~~~lg~~~--~~yl~~iiP~l~~~l~~------------------------------------  193 (318)
                      .........+..++..+.+..|..+  .+|+..++|.+...+..                                    
T Consensus       530 ~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~  609 (888)
T d1qbkb_         530 KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR  609 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Confidence            6665555566666666666665543  34555565655554421                                    


Q ss_pred             ------------------------CCHHHHHHHHHHHHHHhhhhcCCCchhHHH--HHHHhhhhcccCCChHHHHHHHHH
Q psy10471        194 ------------------------RDLVHRQTACATIKHMALGVYGFGCEDALT--HLLNYVWPNIFETSPHLVQAFMDA  247 (318)
Q Consensus       194 ------------------------~~~~~R~~a~~~i~~la~~~~~~~~~~~i~--hll~~l~~~i~d~~~~vr~~ii~~  247 (318)
                                              .+..+...+.++++.++...+ ..++..+.  .+.+.+...+.+.++++|+.++.+
T Consensus       610 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~-~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~l  688 (888)
T d1qbkb_         610 CVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLG-GNIEQLVARSNILTLMYQCMQDKMPEVRQSSFAL  688 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHT-TTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhh-hhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHH
Confidence                                    112233344455555555442 22233222  155666677778899999999999


Q ss_pred             HHHHHHHcChhh--HHHhHHHHh----ccccccchH-HHHHHHHHhhccccccccccCCCC
Q psy10471        248 VEGLRVALGPVR--ILQYVLQGL----FHPARKVRD-VYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       248 i~~i~~alG~~~--~~~~vl~~l----~~~a~~~r~-~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      ++.++.+.|...  +.+.+++.+    -+....+++ +-|-+- -+-...++++.||+|.+
T Consensus       689 lgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig-~ia~~~~~~~~py~~~i  748 (888)
T d1qbkb_         689 LGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIG-EISIQMGIEMQPYIPMV  748 (888)
T ss_dssp             HHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHH-HHHHHTGGGGGGGSHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH
Confidence            999999998753  444455544    333333333 444332 22233456899998765

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=6.7e-14  Score=139.11  Aligned_cols=263  Identities=15%  Similarity=0.125  Sum_probs=172.9

Q ss_pred             hhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHHHhh
Q psy10471          4 DKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSA-REWMRICFELLELLK   81 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~-~~~~~il~~Ll~~L~   81 (318)
                      .|+.++.+++.++...+. .+.|+++++++.+.+.++|+++.||.++++++|++++..++.... ..+..++..++..+.
T Consensus       385 ~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~  464 (861)
T d2bpta1         385 NREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ  464 (861)
T ss_dssp             HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccc
Confidence            466778888887763332 478999999999999999999999999999999999876654432 233334444443333


Q ss_pred             hchHHHHHHHHHHH-----------------------------------------------HHHHhhhCHH------HHH
Q psy10471         82 AHKKAIRRATVNTF-----------------------------------------------GYIAKAIGPH------DVL  108 (318)
Q Consensus        82 d~~~~vR~~av~~l-----------------------------------------------g~la~~igp~------~~l  108 (318)
                      + ++.++..+..++                                               +.+.+..+..      .+.
T Consensus       465 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~  543 (861)
T d2bpta1         465 D-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIS  543 (861)
T ss_dssp             S-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred             c-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            3 223333333333                                               3333322210      111


Q ss_pred             HHHHHhh----cccc-------h----hhHHHHHHHHHHHHhhcC----cc--cchHHHHHHhcCC-cchHHHHHHHHHH
Q psy10471        109 ATLLNNL----KVQE-------R----QNRVCTTVAIAIVAETCS----PF--TVLPALMNEYRVP-ELNVQNGVLKALS  166 (318)
Q Consensus       109 ~~Ll~~L----k~~~-------~----~~R~~~~~ai~~i~~~~~----p~--~vip~L~~~~~d~-~~~v~~~vl~al~  166 (318)
                      +.+.+.+    ....       .    ..+..+...++.+...+.    |+  .+++.+++.+.+. +..++..++.+++
T Consensus       544 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~  623 (861)
T d2bpta1         544 TFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS  623 (861)
T ss_dssp             HHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHH
Confidence            1111111    0000       0    112222223333333332    33  5677777777554 5678889999999


Q ss_pred             HHHHHHccccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCC--ChHHHHHH
Q psy10471        167 FLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFET--SPHLVQAF  244 (318)
Q Consensus       167 ~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~--~~~vr~~i  244 (318)
                      .+++.+|..+.+|++.++|.+...+.+.+..+|..++.+++.++..++ .........+++.++..+.++  +++++..+
T Consensus       624 ~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~-~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~  702 (861)
T d2bpta1         624 ALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE-EDFRRYSDAMMNVLAQMISNPNARRELKPAV  702 (861)
T ss_dssp             HHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG-GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH-HHhHhhHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999987764 222334445556555555543  56899999


Q ss_pred             HHHHHHHHHHcChhh--HHHhHHHHh
Q psy10471        245 MDAVEGLRVALGPVR--ILQYVLQGL  268 (318)
Q Consensus       245 i~~i~~i~~alG~~~--~~~~vl~~l  268 (318)
                      +.+++.++..+|..+  +.|.+++.+
T Consensus       703 ~~~l~~i~~~~~~~~~~~l~~~~~~l  728 (861)
T d2bpta1         703 LSVFGDIASNIGADFIPYLNDIMALC  728 (861)
T ss_dssp             HHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999865  456666666

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.2e-12  Score=128.63  Aligned_cols=264  Identities=17%  Similarity=0.158  Sum_probs=177.1

Q ss_pred             chhhhHHHHHHHHHHHhc-cCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHHHh
Q psy10471          3 SDKNLGIKIVQQIAILMG-CAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVS-AREWMRICFELLELL   80 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g-~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~-~~~~~~il~~Ll~~L   80 (318)
                      ..|++++.+++.++...+ ..+.+++.++++.+.+.++|+++.||.++++++|++++..++... ...+.+++..+++.+
T Consensus       381 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l  460 (876)
T d1qgra_         381 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL  460 (876)
T ss_dssp             HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHh
Confidence            356777777777665222 247899999999999999999999999999999999998765433 334555556666666


Q ss_pred             hhchHHHHHHHHHHHHHHHhhh------------------CHH--HHHHHHHHhhcccch---hhHHHHHH---------
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAI------------------GPH--DVLATLLNNLKVQER---QNRVCTTV---------  128 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~i------------------gp~--~~l~~Ll~~Lk~~~~---~~R~~~~~---------  128 (318)
                      ++ ++.++..+..++..+.+..                  .++  .++..++..+...+.   ..|.....         
T Consensus       461 ~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  539 (876)
T d1qgra_         461 SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS  539 (876)
T ss_dssp             TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred             cC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhh
Confidence            55 4557777777776655421                  111  233333333321110   11111111         


Q ss_pred             -----------------------------------------------HHHHHHhhcC-----cc--cchHHHHHHhcC--
Q psy10471        129 -----------------------------------------------AIAIVAETCS-----PF--TVLPALMNEYRV--  152 (318)
Q Consensus       129 -----------------------------------------------ai~~i~~~~~-----p~--~vip~L~~~~~d--  152 (318)
                                                                     ++..+....+     ++  .+++.+++.+..  
T Consensus       540 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~  619 (876)
T d1qgra_         540 AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTA  619 (876)
T ss_dssp             CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCC
Confidence                                                           1111111111     11  466677776643  


Q ss_pred             CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhh
Q psy10471        153 PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWP  231 (318)
Q Consensus       153 ~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~-~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~  231 (318)
                      ++.+++..++.++..+++.+|..+.+|++.++|.+...+.+.+ +.+|+.+..+++.++...+ .........+.+.+++
T Consensus       620 ~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i~~~l~~  698 (876)
T d1qgra_         620 GSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-SNIIPFCDEVMQLLLE  698 (876)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhH-HhhhhhHHHHHHHHHH
Confidence            4567889999999999999999999999999999999997665 7899999999999887764 3333444455555555


Q ss_pred             cccCC--ChHHHHHHHHHHHHHHHHcChhh--HHHhHHHHh
Q psy10471        232 NIFET--SPHLVQAFMDAVEGLRVALGPVR--ILQYVLQGL  268 (318)
Q Consensus       232 ~i~d~--~~~vr~~ii~~i~~i~~alG~~~--~~~~vl~~l  268 (318)
                      .+.++  +++++..++.+++.++.++|.++  +.+.+++.+
T Consensus       699 ~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l  739 (876)
T d1qgra_         699 NLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTL  739 (876)
T ss_dssp             HHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             HhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHH
Confidence            55443  46899999999999999999854  556667666

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.7e-12  Score=132.63  Aligned_cols=265  Identities=12%  Similarity=0.164  Sum_probs=193.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---HH
Q psy10471         31 VEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DV  107 (318)
Q Consensus        31 ~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---~~  107 (318)
                      +.-++++++|++|.+|..|++.|.+.-....-..+......++..|++.|+|+++.||..|++++|.++..++++   .+
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l   84 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETI   84 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHH
Confidence            344667889999999999999888766544433445667778888999999999999999999999999988876   35


Q ss_pred             HHHHHHhhcccchhhHHHHHHHHHHHHhhcC------c--ccch----HHHHHHh-cCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        108 LATLLNNLKVQERQNRVCTTVAIAIVAETCS------P--FTVL----PALMNEY-RVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       108 l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~------p--~~vi----p~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                      ++.|+..+.+.+...|-....++..+.....      .  ..+.    +.+.+.. +..+..++..++..+..++...|.
T Consensus        85 ~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~  164 (1207)
T d1u6gc_          85 VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG  164 (1207)
T ss_dssp             HHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhH
Confidence            6777777776666667666666654433221      1  1233    3344434 334567888999999999999999


Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHH
Q psy10471        175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVA  254 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~a  254 (318)
                      .+.+|.+.+++.+...+.+.+..+|+.++.+++.++..+......+.+.+++..+.++   .+...|..++.+++.++..
T Consensus       165 ~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~~~~~~~l~~l~~~  241 (1207)
T d1u6gc_         165 LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN---DSMSTTRTYIQCIAAISRQ  241 (1207)
T ss_dssp             SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHT---CSSCSCTTHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988775444566777777665443   5566788899999999999


Q ss_pred             cChhh------HHHhHHHHhccccccchHHHHHHHHHhhccccccccccC
Q psy10471        255 LGPVR------ILQYVLQGLFHPARKVRDVYWKIYNSLYIGGQDALISAY  298 (318)
Q Consensus       255 lG~~~------~~~~vl~~l~~~a~~~r~~~w~i~~~~~~~~~~~~~p~~  298 (318)
                      .|..+      +.|.++..+-++...+|+..-..+..+.....+.+.||+
T Consensus       242 ~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~  291 (1207)
T d1u6gc_         242 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV  291 (1207)
T ss_dssp             SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhH
Confidence            98732      455555555556667777555555555444445666653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.8e-12  Score=116.70  Aligned_cols=251  Identities=12%  Similarity=0.060  Sum_probs=179.6

Q ss_pred             hhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCC--CCHHHHHHHHHHHHHHHhhCCCCCChhhHHH-HHHHHHHHh
Q psy10471          5 KNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVD--EQQKVQENCIDLVGRIADRGPEYVSAREWMR-ICFELLELL   80 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d--~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~-il~~Ll~~L   80 (318)
                      ++.++.+++.+....+. ...++...+++.+...+++  .++.+|.+|+++++.+..............+ ++..+...+
T Consensus       146 ~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  225 (458)
T d1ibrb_         146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT  225 (458)
T ss_dssp             HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHh
Confidence            56789999999987654 6888999999999998876  4578999999999999875443222222222 333344666


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhC----HH--H-HHHHHHHhhcccchhhHHHHHHHHHHHHhhc----------------
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIG----PH--D-VLATLLNNLKVQERQNRVCTTVAIAIVAETC----------------  137 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~ig----p~--~-~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~----------------  137 (318)
                      ++++..+|..++++++.+++..+    |+  . +...+...+++++...|..+...+..+++..                
T Consensus       226 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~  305 (458)
T d1ibrb_         226 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP  305 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhH
Confidence            77888999999999999987544    32  1 2222334444444455655555555443210                


Q ss_pred             ----Cc-------ccchHHHHHHhcC-------CcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhcCCHHHH
Q psy10471        138 ----SP-------FTVLPALMNEYRV-------PELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR  199 (318)
Q Consensus       138 ----~p-------~~vip~L~~~~~d-------~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~~~~~~R  199 (318)
                          .+       ..++|.+...+.+       .+.+++..+..++..+++..|.   ..++.++|.+.+.+++.+..+|
T Consensus       306 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~~~l~~~i~~~l~s~~~~~r  382 (458)
T d1ibrb_         306 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYR  382 (458)
T ss_dssp             SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH---hhhhHHHHHHHHHhcCCCHHHH
Confidence                01       1344555555432       2235788889999999988884   5678899999999999999999


Q ss_pred             HHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChh
Q psy10471        200 QTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPV  258 (318)
Q Consensus       200 ~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~  258 (318)
                      ..++.+++.++..+......+.+..+++.+.+.+.|+++.||.+++.++++++..++..
T Consensus       383 ~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~  441 (458)
T d1ibrb_         383 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  441 (458)
T ss_dssp             HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999998876544444555667777788889999999999999999999998753

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=2.1e-11  Score=120.72  Aligned_cols=293  Identities=15%  Similarity=0.164  Sum_probs=186.4

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhc
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAH   83 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~   83 (318)
                      .+..+..+++.++...|..+   ++.+.+.+...+.+.++.+|++++.++|.+++........+....++..+++.++|+
T Consensus       347 ~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~  423 (861)
T d2bpta1         347 VSMSAGACLQLFAQNCGNHI---LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ  423 (861)
T ss_dssp             HHHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS
T ss_pred             HHHHHHHHHHHHHhhcchhh---hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCc
Confidence            45567788999999888655   445566677778889999999999999999986654331344455666777888999


Q ss_pred             hHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC--------cc--cchHH
Q psy10471         84 KKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS--------PF--TVLPA  145 (318)
Q Consensus        84 ~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~--------p~--~vip~  145 (318)
                      ++.+|.++++++|.+++.+++.        .++..+.+.+.+..+ .+.....++..+.+.+.        ++  .++..
T Consensus       424 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  502 (861)
T d2bpta1         424 SLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPK-VATNCSWTIINLVEQLAEATPSPIYNFYPALVDG  502 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChH-HHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHH
Confidence            9999999999999999887652        234444444443222 22222222222221111        00  22333


Q ss_pred             HHHHhcC--CcchHH--------------------------------------------------------HHHHHHHHH
Q psy10471        146 LMNEYRV--PELNVQ--------------------------------------------------------NGVLKALSF  167 (318)
Q Consensus       146 L~~~~~d--~~~~v~--------------------------------------------------------~~vl~al~~  167 (318)
                      ++.....  .+..++                                                        ..+...+..
T Consensus       503 l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  582 (861)
T d2bpta1         503 LIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAA  582 (861)
T ss_dssp             HHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHH
Confidence            3332211  111111                                                        233344445


Q ss_pred             HHHHHccccccchhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHH
Q psy10471        168 LFEYIGEMGKDYIYAVTPLLEDALMDRD-LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD  246 (318)
Q Consensus       168 i~~~lg~~~~~yl~~iiP~l~~~l~~~~-~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~  246 (318)
                      ++...+..+.+|.+.+++.+.+.+.+.+ ..+|+.+..+++.++..++ ..+...+..+++.+...+.+.+++++..+++
T Consensus       583 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~-~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~  661 (861)
T d2bpta1         583 VIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG-KGFEKYLETFSPYLLKALNQVDSPVSITAVG  661 (861)
T ss_dssp             HHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHH
T ss_pred             HHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhh-HHHHHHHHHHhhHHHHHhCCCCHHHHHHHHH
Confidence            5555566677777888888887776554 5788889999998888773 4456777888888888888899999999999


Q ss_pred             HHHHHHHHcChhh--HHHhHHHHh----cccc--ccchHHHHHHHHHhhccccccccccCCCC
Q psy10471        247 AVEGLRVALGPVR--ILQYVLQGL----FHPA--RKVRDVYWKIYNSLYIGGQDALISAYPRI  301 (318)
Q Consensus       247 ~i~~i~~alG~~~--~~~~vl~~l----~~~a--~~~r~~~w~i~~~~~~~~~~~~~p~~p~~  301 (318)
                      +++.++..+|.+.  +.+-+++.+    -.+.  +.+|...-..+..+-...+..|.||+|.+
T Consensus       662 ~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~  724 (861)
T d2bpta1         662 FIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDI  724 (861)
T ss_dssp             HHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred             HHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998753  333333333    2222  23444333333223223335788987766

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.5e-11  Score=123.04  Aligned_cols=254  Identities=15%  Similarity=0.124  Sum_probs=194.8

Q ss_pred             chhhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh--
Q psy10471          3 SDKNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL--   80 (318)
Q Consensus         3 ~~r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L--   80 (318)
                      ..|++++.+++.++...|..+.||++.++|.+...++++++.+|+.++.++..++...+..+ .+.+..++..+++.+  
T Consensus       226 ~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~-~~~~~~ii~~~l~~l~~  304 (1207)
T d1u6gc_         226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTY  304 (1207)
T ss_dssp             CSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhh-hhhHHHHHHHHHHHHhc
Confidence            45788999999999999999999999999999999999999999999999999999887655 333444443332221  


Q ss_pred             -----------------------------------hhchHHHHHHHHHHHHHHHhhhCH----H--HHHHHHHHhhcccc
Q psy10471         81 -----------------------------------KAHKKAIRRATVNTFGYIAKAIGP----H--DVLATLLNNLKVQE  119 (318)
Q Consensus        81 -----------------------------------~d~~~~vR~~av~~lg~la~~igp----~--~~l~~Ll~~Lk~~~  119 (318)
                                                         .+....+|+.++++++.+....+.    +  .+.+.+++.+++.+
T Consensus       305 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~  384 (1207)
T d1u6gc_         305 DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKERE  384 (1207)
T ss_dssp             C------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSS
T ss_pred             CcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence                                               234456899999999998865442    1  45777888888777


Q ss_pred             hhhHHHHHHHHHHHHhhcC-----------------c--------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        120 RQNRVCTTVAIAIVAETCS-----------------P--------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       120 ~~~R~~~~~ai~~i~~~~~-----------------p--------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                      ..+|..+..+++.+.....                 |        -.+++.+.+.+++.+..++..++..+..+...++.
T Consensus       385 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~  464 (1207)
T d1u6gc_         385 ENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG  464 (1207)
T ss_dssp             SHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcch
Confidence            7888888888875543211                 1        13666777788888889999999999999999998


Q ss_pred             ccccchhhhHHHHHHHHhcCC--HHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHH
Q psy10471        175 MGKDYIYAVTPLLEDALMDRD--LVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLR  252 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~~~--~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~  252 (318)
                      .+.+|+..+++.+...+.+..  ...|..+...+..+............+..+.+.+...+.+.+..++...+.+++.+.
T Consensus       465 ~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~  544 (1207)
T d1u6gc_         465 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV  544 (1207)
T ss_dssp             TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHH
Confidence            899999999999999997654  577888888887776654322233444455666667777888999999999999999


Q ss_pred             HHcCh
Q psy10471        253 VALGP  257 (318)
Q Consensus       253 ~alG~  257 (318)
                      .++++
T Consensus       545 ~~l~~  549 (1207)
T d1u6gc_         545 KVIRP  549 (1207)
T ss_dssp             HHHCC
T ss_pred             HHhhh
Confidence            98875

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.6e-10  Score=103.77  Aligned_cols=209  Identities=13%  Similarity=0.154  Sum_probs=150.8

Q ss_pred             hhhHHHHHHHHHHHhcc--CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHH-HHHhh
Q psy10471          5 KNLGIKIVQQIAILMGC--AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFEL-LELLK   81 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~--~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~L-l~~L~   81 (318)
                      |..++++++.+......  ...+....+.+.+...++|+++.+|..++.+++.+++..+..+. +.+.+++..+ ...++
T Consensus       190 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~-~~l~~~~~~~~~~~~~  268 (458)
T d1ibrb_         190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME-TYMGPALFAITIEAMK  268 (458)
T ss_dssp             HHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT-TTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHhc
Confidence            56677777777654322  34455566788888899999999999999999999998775442 1222222222 24446


Q ss_pred             hchHHHHHHHHHHHHHHHhhhCH---------------------------HHHHHHHHHhhc-------ccchhhHHHHH
Q psy10471         82 AHKKAIRRATVNTFGYIAKAIGP---------------------------HDVLATLLNNLK-------VQERQNRVCTT  127 (318)
Q Consensus        82 d~~~~vR~~av~~lg~la~~igp---------------------------~~~l~~Ll~~Lk-------~~~~~~R~~~~  127 (318)
                      +....+|..|++.++.+++....                           ..+.+.+...+.       +.+...|.+..
T Consensus       269 ~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~  348 (458)
T d1ibrb_         269 SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAG  348 (458)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHH
Confidence            67778999999888887653210                           122333444332       11125788888


Q ss_pred             HHHHHHHhhcCcc---cchHHHHHHhcCCcchHHHHHHHHHHHHHHHH-ccccccchhhhHHHHHHHHhcCCHHHHHHHH
Q psy10471        128 VAIAIVAETCSPF---TVLPALMNEYRVPELNVQNGVLKALSFLFEYI-GEMGKDYIYAVTPLLEDALMDRDLVHRQTAC  203 (318)
Q Consensus       128 ~ai~~i~~~~~p~---~vip~L~~~~~d~~~~v~~~vl~al~~i~~~l-g~~~~~yl~~iiP~l~~~l~~~~~~~R~~a~  203 (318)
                      .++..++..++..   .++|.+.+.+++++..+|.+++.+++.+.+.. +..+++|+++++|.+...++|.++.+|.+++
T Consensus       349 ~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~  428 (458)
T d1ibrb_         349 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAA  428 (458)
T ss_dssp             HHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            8888887776642   56777778889999999999999999888654 4467899999999999999999999999999


Q ss_pred             HHHHHHhhhhc
Q psy10471        204 ATIKHMALGVY  214 (318)
Q Consensus       204 ~~i~~la~~~~  214 (318)
                      .+++.++..+.
T Consensus       429 ~~l~~i~~~~~  439 (458)
T d1ibrb_         429 WTVGRICELLP  439 (458)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHHhh
Confidence            99999988774

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=3.2e-09  Score=91.61  Aligned_cols=207  Identities=14%  Similarity=0.098  Sum_probs=85.4

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH--HH
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP--HD  106 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp--~~  106 (318)
                      ..+|.++..++|+++.||..|+.+||++......   .....+.+..  ..++|++..+|..++.+++.++..-..  ..
T Consensus        50 ~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~---~~~~~~~l~~--~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~  124 (276)
T d1oyza_          50 DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC---EDNVFNILNN--MALNDKSACVRATAIESTAQRCKKNPIYSPK  124 (276)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT---HHHHHHHHHH--HHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc---ccchHHHHHH--HHhcCCChhHHHHHHHHHHHHccccchhhHH
Confidence            3445555555555555555555555554321110   1111111110  112444455555555555554432111  12


Q ss_pred             HHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHH
Q psy10471        107 VLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPL  186 (318)
Q Consensus       107 ~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~  186 (318)
                      +++.+...+.+.+..+|..++.+++.+.    ....+|.+...+.+.+..++..+..++..+..        ......+.
T Consensus       125 ~~~~l~~~~~d~~~~vr~~a~~~l~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~  192 (276)
T d1oyza_         125 IVEQSQITAFDKSTNVRRATAFAISVIN----DKATIPLLINLLKDPNGDVRNWAAFAININKY--------DNSDIRDC  192 (276)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHTC-------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------CCHHHHHH
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHhhcc----hHHHHHHHHHhcccccchhhhhHHHHHHhhhc--------cccccchh
Confidence            3344444444444344444443333221    11344444444444444444333332222111        11233344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHH
Q psy10471        187 LEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQ  266 (318)
Q Consensus       187 l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~  266 (318)
                      +...+.+.+..+|..+..+++.+       +.+..+..++..+    .  ++++|..++.+++.+    |.+...|.+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~al~~~-------~~~~~~~~L~~~l----~--d~~vr~~a~~aL~~i----g~~~~~~~L~~  255 (276)
T d1oyza_         193 FVEMLQDKNEEVRIEAIIGLSYR-------KDKRVLSVLCDEL----K--KNTVYDDIIEAAGEL----GDKTLLPVLDT  255 (276)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHT-------TCGGGHHHHHHHH----T--SSSCCHHHHHHHHHH----CCGGGHHHHHH
T ss_pred             hhhhhhhhhhhhhhhhccccchh-------hhhhhHHHHHHHh----C--ChHHHHHHHHHHHHc----CCHHHHHHHHH
Confidence            45555555555555555554332       2223333333322    1  224555555555543    44555555555


Q ss_pred             Hhc
Q psy10471        267 GLF  269 (318)
Q Consensus       267 ~l~  269 (318)
                      .+.
T Consensus       256 ~l~  258 (276)
T d1oyza_         256 MLY  258 (276)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            553

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.3e-09  Score=105.14  Aligned_cols=249  Identities=13%  Similarity=0.089  Sum_probs=159.5

Q ss_pred             hhhHHHHHHHHHHHhccCcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhch
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHK   84 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~   84 (318)
                      |..+..+++.++...|..+   ++.+++.+...+.+.++..|++++..+|.+++.............++..+++.++|++
T Consensus       345 ~~~a~~~l~~l~~~~~~~~---~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~  421 (876)
T d1qgra_         345 CKAAGVCLMLLATCCEDDI---VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS  421 (876)
T ss_dssp             HHHHHHHHHHHHHHHGGGG---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHHhhhhh---hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc
Confidence            5677888999998887644   5677888888899999999999999999988765432212444556667778889999


Q ss_pred             HHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc------------------C
Q psy10471         85 KAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETC------------------S  138 (318)
Q Consensus        85 ~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~------------------~  138 (318)
                      +.||.++.+++|.+++.+++.        .+++.+++.+.+.. ..+.....++..+.+.+                  .
T Consensus       422 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~  500 (876)
T d1qgra_         422 VVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEP-RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS  500 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST
T ss_pred             cHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            999999999999999876532        35666666665432 33333333333322211                  1


Q ss_pred             cc--cchHHHHHHhcCCc---chHHHHHHHHHH-----------------------------------------------
Q psy10471        139 PF--TVLPALMNEYRVPE---LNVQNGVLKALS-----------------------------------------------  166 (318)
Q Consensus       139 p~--~vip~L~~~~~d~~---~~v~~~vl~al~-----------------------------------------------  166 (318)
                      ++  .+++.++..+.+++   .+++..++.++.                                               
T Consensus       501 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  580 (876)
T d1qgra_         501 SSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDL  580 (876)
T ss_dssp             TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHH
Confidence            11  35555555554322   222222222222                                               


Q ss_pred             ---------HHHHHHcc-ccccchhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhccc
Q psy10471        167 ---------FLFEYIGE-MGKDYIYAVTPLLEDALMD--RDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIF  234 (318)
Q Consensus       167 ---------~i~~~lg~-~~~~yl~~iiP~l~~~l~~--~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~  234 (318)
                               .+++.+|. .+.+|.+.+++.+.+.+..  .+..++..+..+++.++...+ .++...+..+++.+...+.
T Consensus       581 ~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~-~~~~~~l~~ii~~l~~~l~  659 (876)
T d1qgra_         581 QSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLG-GEFLKYMEAFKPFLGIGLK  659 (876)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHG-GGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcc-hhhHHHHHHHHHHHHHHHh
Confidence                     22222222 1334555666776666653  345678888888888877663 3445566677777766665


Q ss_pred             CC-ChHHHHHHHHHHHHHHHHcChh
Q psy10471        235 ET-SPHLVQAFMDAVEGLRVALGPV  258 (318)
Q Consensus       235 d~-~~~vr~~ii~~i~~i~~alG~~  258 (318)
                      +. ++++|..+++.++.+....|..
T Consensus       660 ~~~~~~v~~~a~~~l~~l~~~~~~~  684 (876)
T d1qgra_         660 NYAEYQVCLAAVGLVGDLCRALQSN  684 (876)
T ss_dssp             HCTTHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhHHh
Confidence            54 4779999999999999988864

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.3e-09  Score=103.08  Aligned_cols=276  Identities=11%  Similarity=0.097  Sum_probs=184.2

Q ss_pred             hHHHHHHHHHHHhccCcCCChHhH-----HHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHh
Q psy10471          7 LGIKIVQQIAILMGCAILPHLKNL-----VEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELL   80 (318)
Q Consensus         7 ~~l~~i~~La~~~g~~~~P~l~~l-----~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L   80 (318)
                      .-+.++..+....-..-.|+++.+     +|.++..++. .++.+|..|+++|+.++.........-....++..++..|
T Consensus        92 ~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL  171 (503)
T d1wa5b_          92 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL  171 (503)
T ss_dssp             HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHh
Confidence            334556666665555567776554     6788888875 5688999999999999975443211111111333455777


Q ss_pred             hhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHH
Q psy10471         81 KAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPA  145 (318)
Q Consensus        81 ~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~  145 (318)
                      ++++..++..|++++|.++.. ++.        ..++.|+..+...+...+..++.++..++....+       ..++|.
T Consensus       172 ~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~  250 (503)
T d1wa5b_         172 YTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT  250 (503)
T ss_dssp             HHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHH
T ss_pred             cCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence            888888999999999999853 332        2366677777766555555666677666543222       168899


Q ss_pred             HHHHhcCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHH-
Q psy10471        146 LMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALT-  223 (318)
Q Consensus       146 L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~-  223 (318)
                      +...++.++.++...++.++.++...-.......+ ..++|.+...+.+.+..++..++.+++.++..-.  .....+. 
T Consensus       251 l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~--~~~~~~~~  328 (503)
T d1wa5b_         251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND--LQTQVVIN  328 (503)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH--HHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHH--HHHHhhhc
Confidence            99999999999998899999888753222222233 3588999999999999999999999988864321  1111111 


Q ss_pred             -HHHHhhhhcccCCChHHHHHHHHHHHHHHHHcCh---------hhHHHhHHHHhcccccc-chHHHHHHHHHhh
Q psy10471        224 -HLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGP---------VRILQYVLQGLFHPARK-VRDVYWKIYNSLY  287 (318)
Q Consensus       224 -hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~---------~~~~~~vl~~l~~~a~~-~r~~~w~i~~~~~  287 (318)
                       .+++.+...+.+++++++..++.++..++.  |.         ..+.|.++..+-+...+ -+++.|.+.|...
T Consensus       329 ~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~--~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         329 AGVLPALRLLLSSPKENIKKEACWTISNITA--GNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHhcCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence             245566666667889999999888887753  22         22445555666555544 3457888777664

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.1e-08  Score=93.82  Aligned_cols=247  Identities=14%  Similarity=0.101  Sum_probs=152.7

Q ss_pred             hhHHHHHHHHHHHhccCcCCChH-----hHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHH
Q psy10471          6 NLGIKIVQQIAILMGCAILPHLK-----NLVEIIEHGLVD-EQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLEL   79 (318)
Q Consensus         6 ~~~l~~i~~La~~~g~~~~P~l~-----~l~~~l~~~l~d-~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~   79 (318)
                      ..|+.++..+..   ..-.|.+.     .++|.++..+++ +++.+|..|+++|+.+|....+....---...+..+++.
T Consensus        31 ~~a~~~l~~l~s---~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~  107 (434)
T d1q1sc_          31 LQATQAARKLLS---REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL  107 (434)
T ss_dssp             HHHHHHHHHHHH---SSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhc
Confidence            345555555543   22233332     467788899976 458899999999999996543211100001234456678


Q ss_pred             hhhchHHHHHHHHHHHHHHHhhhCHH--------HHHHHHHHhh------------------------------------
Q psy10471         80 LKAHKKAIRRATVNTFGYIAKAIGPH--------DVLATLLNNL------------------------------------  115 (318)
Q Consensus        80 L~d~~~~vR~~av~~lg~la~~igp~--------~~l~~Ll~~L------------------------------------  115 (318)
                      |++++..+|+.|+++++.++.. +|.        ..+..++..+                                    
T Consensus       108 L~~~~~~~~~~a~~~L~nl~~~-~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  186 (434)
T d1q1sc_         108 LASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAV  186 (434)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHhcc-chHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhh
Confidence            8888888999999999987642 111        1122233322                                    


Q ss_pred             -----------cccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccc
Q psy10471        116 -----------KVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGK  177 (318)
Q Consensus       116 -----------k~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~  177 (318)
                                 +.++...+..++.++..++....       ...++|.+...++.++..++..+++++..++.. .....
T Consensus       187 ~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~-~~~~~  265 (434)
T d1q1sc_         187 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG-TDEQT  265 (434)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS-CHHHH
T ss_pred             hhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhh-hhHHH
Confidence                       22222233333333333321110       125788888888888888888888888877642 21223


Q ss_pred             cch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchh-HHHH-HHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        178 DYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCED-ALTH-LLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       178 ~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~-~i~h-ll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      .++  ..+++.+..++.+.+..+|..++..+..++....  +... ...+ +++.++..+.+.+++++..++.++..++.
T Consensus       266 ~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         266 QKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             HHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccc--hhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHh
Confidence            333  4578888999999999999999999988865432  1111 1111 34444555666889999999999999988


Q ss_pred             HcChhh
Q psy10471        254 ALGPVR  259 (318)
Q Consensus       254 alG~~~  259 (318)
                      .-..+.
T Consensus       344 ~~~~~~  349 (434)
T d1q1sc_         344 GGTVEQ  349 (434)
T ss_dssp             HSCHHH
T ss_pred             cCCHHH
Confidence            766553

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=6.1e-08  Score=83.30  Aligned_cols=210  Identities=14%  Similarity=0.042  Sum_probs=145.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCH-HHHHHH
Q psy10471         32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGP-HDVLAT  110 (318)
Q Consensus        32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp-~~~l~~  110 (318)
                      ..+++.|+|++|.||.+|+.+||.+..        ++   .+..|+++++|++..+|+.|+.++|.+...-+- ....+.
T Consensus        22 ~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~---~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~   90 (276)
T d1oyza_          22 DELFRLLDDHNSLKRISSARVLQLRGG--------QD---AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNI   90 (276)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC--------HH---HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhCC--------Hh---HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccchHHH
Confidence            346789999999999999999998743        22   333455777999999999999999988643322 233444


Q ss_pred             HHHh-hcccchhhHHHHHHHHHHHHhhcCc--ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHH
Q psy10471        111 LLNN-LKVQERQNRVCTTVAIAIVAETCSP--FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLL  187 (318)
Q Consensus       111 Ll~~-Lk~~~~~~R~~~~~ai~~i~~~~~p--~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l  187 (318)
                      +++. +++++..+|...+.+++.++..-..  -.+++.+...+.|+...++..++.++..+-.          +..+|.+
T Consensus        91 l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~----------~~~~~~l  160 (276)
T d1oyza_          91 LNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLL  160 (276)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch----------HHHHHHH
Confidence            4443 4566667888889998876543322  1577888888899998888877666553221          3456788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhhHHHhHHHH
Q psy10471        188 EDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVRILQYVLQG  267 (318)
Q Consensus       188 ~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~~~~~vl~~  267 (318)
                      ...+.+.+..+|..+...++......         ....+.+...+.+.+..++...+.++..    +|.+...|.++..
T Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~----~~~~~~~~~L~~~  227 (276)
T d1oyza_         161 INLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSY----RKDKRVLSVLCDE  227 (276)
T ss_dssp             HHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHH----TTCGGGHHHHHHH
T ss_pred             HHhcccccchhhhhHHHHHHhhhccc---------cccchhhhhhhhhhhhhhhhhhccccch----hhhhhhHHHHHHH
Confidence            88888999999988887765543222         2233334566677889999988887754    4777777778777


Q ss_pred             hccccccchH
Q psy10471        268 LFHPARKVRD  277 (318)
Q Consensus       268 l~~~a~~~r~  277 (318)
                      +-++  .+|.
T Consensus       228 l~d~--~vr~  235 (276)
T d1oyza_         228 LKKN--TVYD  235 (276)
T ss_dssp             HTSS--SCCH
T ss_pred             hCCh--HHHH
Confidence            7543  3444

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=6.4e-09  Score=95.51  Aligned_cols=189  Identities=13%  Similarity=0.101  Sum_probs=138.5

Q ss_pred             ChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH
Q psy10471         26 HLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH  105 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~  105 (318)
                      ...+++|.+...+++.++.++..++++|+.++....+....-....++..+.+.+++++..++..++++++.++..-...
T Consensus       185 ~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~  264 (434)
T d1q1sc_         185 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ  264 (434)
T ss_dssp             HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             hhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHH
Confidence            34678899999999999999999999999998754422111111123444566778888899999999999988532221


Q ss_pred             -------HHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHHHhcCCcchHHHHHHHHHHHHHHH
Q psy10471        106 -------DVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMNEYRVPELNVQNGVLKALSFLFEY  171 (318)
Q Consensus       106 -------~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~  171 (318)
                             ..+..+.+.|+..+...|..++.+++.++....       ...++|.+++.+.+++..++..++.++..++..
T Consensus       265 ~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         265 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence                   234456777776666777788877776653211       136899999999999999999999999998876


Q ss_pred             Hccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhc
Q psy10471        172 IGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVY  214 (318)
Q Consensus       172 lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~  214 (318)
                      -+.....++  ..++|.+.+++...+..++..+..++..+.....
T Consensus       345 ~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         345 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            544444444  3478999999999999999999988887765543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.1e-07  Score=89.50  Aligned_cols=245  Identities=13%  Similarity=0.058  Sum_probs=168.8

Q ss_pred             hhhHHHHHHHHHHHhccCcCCCh--HhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          5 KNLGIKIVQQIAILMGCAILPHL--KNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~~~~P~l--~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      ++.++.+++.|+.... ..+-.+  ..+++.++..+++.++.+++.++++|..++....+........+++..++..++.
T Consensus       179 ~~~a~~~L~nia~~~~-~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~  257 (503)
T d1wa5b_         179 KEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYS  257 (503)
T ss_dssp             HHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhhhH-HHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhcc
Confidence            4566777777765211 111111  2356677888899999999999999999998655443333334455556677888


Q ss_pred             chHHHHHHHHHHHHHHHhhhCH-------HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcC-------cccchHHHHH
Q psy10471         83 HKKAIRRATVNTFGYIAKAIGP-------HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCS-------PFTVLPALMN  148 (318)
Q Consensus        83 ~~~~vR~~av~~lg~la~~igp-------~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~-------p~~vip~L~~  148 (318)
                      ++..++..++++++.++..-..       ..+++.++..++.++...+..+..+++.++....       ...++|.+..
T Consensus       258 ~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~  337 (503)
T d1wa5b_         258 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL  337 (503)
T ss_dssp             CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence            8888999999999998852211       1246667788877666677777777776552111       1367899999


Q ss_pred             HhcCCcchHHHHHHHHHHHHHHHHccccccch--hhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHH--
Q psy10471        149 EYRVPELNVQNGVLKALSFLFEYIGEMGKDYI--YAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGFGCEDALTH--  224 (318)
Q Consensus       149 ~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl--~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--  224 (318)
                      .++.++..++..++.++..++.+ .......+  ..++|.+.+.+.+.+..+|..++.++..++....  ...+.+.+  
T Consensus       338 ll~~~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~~~l~  414 (503)
T d1wa5b_         338 LLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL--QRPDIIRYLV  414 (503)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT--TCTHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence            99999999999999999988753 11222233  4688999999999999999999999999877543  22222222  


Q ss_pred             ---HHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        225 ---LLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       225 ---ll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                         +++.+...+...++++...+++++..+-.
T Consensus       415 ~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         415 SQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               23444555556788888888888888754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.70  E-value=1.2e-09  Score=83.05  Aligned_cols=109  Identities=18%  Similarity=0.156  Sum_probs=88.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcc
Q psy10471         38 LVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV  117 (318)
Q Consensus        38 l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~  117 (318)
                      |+|+++.||++|+++||.+.+   +     .    +..|++.|+|+++.+|..|++++|.+    +....++.|.+.|++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~---~-----~----~~~L~~~l~d~~~~vR~~a~~~L~~~----~~~~~~~~L~~~l~d   64 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD---E-----A----FEPLLESLSNEDWRIRGAAAWIIGNF----QDERAVEPLIKLLED   64 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS---T-----T----HHHHHHGGGCSCHHHHHHHHHHHGGG----CSHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH---H-----H----HHHHHHHHcCCCHHHHHHHHHHHHhc----chhhhHHHHHhhhcc
Confidence            579999999999999987532   1     1    23355778999999999999999864    445678889999998


Q ss_pred             cchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHH
Q psy10471        118 QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALS  166 (318)
Q Consensus       118 ~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~  166 (318)
                      ++..+|..++.+++.++    +-.++|.+...++|++..++..+++++.
T Consensus        65 ~~~~VR~~a~~aL~~i~----~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIG----GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CCTHHHHHHHHHHHHHC----SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             chhHHHHHHHHHHHHhC----ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88899999999998764    3367888999999999999998888764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=9.7e-07  Score=83.29  Aligned_cols=245  Identities=12%  Similarity=0.033  Sum_probs=162.9

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhCH---
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIGP---  104 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~igp---  104 (318)
                      ..+|.++.+|+|+++.+|+.|+..++.++......-..-.-..++..+++.|+. ++..+|+.|..++..++..-..   
T Consensus        17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~   96 (529)
T d1jdha_          17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA   96 (529)
T ss_dssp             CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence            347888999999999999999999999986322100000112345556677777 5677999999999988753221   


Q ss_pred             ---HHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCc-------ccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        105 ---HDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP-------FTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       105 ---~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p-------~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                         ...++.|++.|+.++...+..++.++..++.....       ...+|.|+..+++++.+++..++.++..+... ..
T Consensus        97 i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~-~~  175 (529)
T d1jdha_          97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-NQ  175 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CH
T ss_pred             HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhh-hh
Confidence               13478899999987778888888888876643222       36899999999999999999999998877642 11


Q ss_pred             cccc-ch-hhhHHHHHHHHhcC-CHHHHHHHHHHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHH
Q psy10471        175 MGKD-YI-YAVTPLLEDALMDR-DLVHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVE  249 (318)
Q Consensus       175 ~~~~-yl-~~iiP~l~~~l~~~-~~~~R~~a~~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~  249 (318)
                      .... .. ...+|.+.+++.+. +..++..++.++..++..-.   ....+..  .++.+...+.+.+++++..++.++.
T Consensus       176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~---~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~  252 (529)
T d1jdha_         176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS---NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT---HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc---ccchhhhhhhhhhHHHHhcccchhhhhhhhhHHH
Confidence            1111 11 34678888888654 46788888888877754221   1111111  2333345566688889888888888


Q ss_pred             HHHHHcCh----hhHHHhHHHHhccccccchH
Q psy10471        250 GLRVALGP----VRILQYVLQGLFHPARKVRD  277 (318)
Q Consensus       250 ~i~~alG~----~~~~~~vl~~l~~~a~~~r~  277 (318)
                      .+...-..    ....+.+...+-+++..++.
T Consensus       253 ~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~  284 (529)
T d1jdha_         253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVT  284 (529)
T ss_dssp             HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred             hccccccchhhhhhcchhhhhhcccccHHHHH
Confidence            77644332    34566666666665555554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=6.4e-08  Score=84.22  Aligned_cols=182  Identities=10%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             hhhhHHHHHHHHHHHhcc-CcCCChHhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhh
Q psy10471          4 DKNLGIKIVQQIAILMGC-AILPHLKNLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKA   82 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~-~~~P~l~~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d   82 (318)
                      +|..++.+|..|+.-.-. ...-.+..+.+++...++++++.+|..|+++||.+++..+..-..---...+..|++++.+
T Consensus        33 ~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~  112 (264)
T d1xqra1          33 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  112 (264)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhc
Confidence            567788888888762211 1111123445556678889999999999999999998654211000001345556677765


Q ss_pred             -chHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHH
Q psy10471         83 -HKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGV  161 (318)
Q Consensus        83 -~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~v  161 (318)
                       ..+.+|+.++.+++.++..-.+..-  .+.                          ....++.+++.++.++..++..+
T Consensus       113 ~~~~~v~~~a~~aL~~l~~~~~~~~~--~~~--------------------------~~~gi~~L~~lL~~~~~~~~~~a  164 (264)
T d1xqra1         113 DACDTVRVKALFAISCLVREQEAGLL--QFL--------------------------RLDGFSVLMRAMQQQVQKLKVKS  164 (264)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHH--HHH--------------------------HTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhccchhhHH--HHH--------------------------HhhhhhHHHHHHhcCchHHHHHH
Confidence             6678999999999998864333210  000                          01345668888888888888888


Q ss_pred             HHHHHHHHHHHccccccchh-hhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh
Q psy10471        162 LKALSFLFEYIGEMGKDYIY-AVTPLLEDALMDRDLVHRQTACATIKHMALGV  213 (318)
Q Consensus       162 l~al~~i~~~lg~~~~~yl~-~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~  213 (318)
                      +.++..++..-......+.. ..+|.+..++++.++.+|..++.+++.++...
T Consensus       165 ~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         165 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            89998887654433444443 47899999999999999999999999887543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=7e-06  Score=82.16  Aligned_cols=253  Identities=6%  Similarity=-0.005  Sum_probs=162.3

Q ss_pred             hhhhHHHHHHHHHHHhccCcCCChHhHHHH-HHhhcC--CCCHHHHHHHHHHHHHHHhhCCC----------CCCh-hhH
Q psy10471          4 DKNLGIKIVQQIAILMGCAILPHLKNLVEI-IEHGLV--DEQQKVQENCIDLVGRIADRGPE----------YVSA-REW   69 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~~~P~l~~l~~~-l~~~l~--d~~~~vR~aa~~~LG~la~~~~~----------~i~~-~~~   69 (318)
                      -|+.+..++..++...+..+.+.+.+.+.. +.....  +.++..|.+++.++|.++..+.-          ..+. ..+
T Consensus       377 ~r~~a~~ll~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l  456 (959)
T d1wa5c_         377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF  456 (959)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHH
Confidence            467788888888887665544433333322 222222  34688899999999999864331          1111 223


Q ss_pred             HHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---HHHHHHHHhhcccchhhHHHHHHHHHHHHhhc---------
Q psy10471         70 MRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---DVLATLLNNLKVQERQNRVCTTVAIAIVAETC---------  137 (318)
Q Consensus        70 ~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---~~l~~Ll~~Lk~~~~~~R~~~~~ai~~i~~~~---------  137 (318)
                      .+.+...+....++.+.+|+.+++.+|+.++...+.   .+++.+++.|.+++..+|..++.|+..+.+.+         
T Consensus       457 ~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~  536 (959)
T d1wa5c_         457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI  536 (959)
T ss_dssp             HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBS
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhh
Confidence            333333333333356679999999999999877664   56788888888888789999999998765432         


Q ss_pred             ------Ccc--cchHHHHHHhcCCcchH-----HHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc-----CCHHHH
Q psy10471        138 ------SPF--TVLPALMNEYRVPELNV-----QNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD-----RDLVHR  199 (318)
Q Consensus       138 ------~p~--~vip~L~~~~~d~~~~v-----~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~-----~~~~~R  199 (318)
                            .|+  .++..++..+.......     ...+++++..+++..+..+.+|.+.+++.+...+..     .++...
T Consensus       537 ~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~  616 (959)
T d1wa5c_         537 FHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT  616 (959)
T ss_dssp             SCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             ccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence                  233  45555666554433222     256999999999999999999999999999888742     235666


Q ss_pred             HHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC
Q psy10471        200 QTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG  256 (318)
Q Consensus       200 ~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG  256 (318)
                      ..+...++.+...............++|.+...+.+...++...+++.++.+....+
T Consensus       617 ~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCC
Confidence            777777777765543222233444455555444444555666677777777666554

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-06  Score=82.62  Aligned_cols=220  Identities=12%  Similarity=0.026  Sum_probs=146.5

Q ss_pred             hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHH---
Q psy10471         29 NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPH---  105 (318)
Q Consensus        29 ~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~---  105 (318)
                      ..+|.++..|+++++.++..|+++|+.++......-..-.....+..|+++|++++..+|..+.++++.++..-.+.   
T Consensus       101 g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         101 GGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence            35788999999999999999999999999866542111112234556778889988899999999999988532222   


Q ss_pred             ----HHHHHHHHhhcccch-hhHHHHHHHHHHHHhh--c----CcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc
Q psy10471        106 ----DVLATLLNNLKVQER-QNRVCTTVAIAIVAET--C----SPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGE  174 (318)
Q Consensus       106 ----~~l~~Ll~~Lk~~~~-~~R~~~~~ai~~i~~~--~----~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~  174 (318)
                          ..++.|++.++..+. ..+..++.++..++..  .    .....++.+...+++++.+++..++.++..+....  
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~--  258 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA--  258 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC--
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccc--
Confidence                246677777764433 4555666666655421  1    11367889999999998888888888887765422  


Q ss_pred             ccccchhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcCC----CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHH
Q psy10471        175 MGKDYIYAVTPLLEDALMDRDLVHRQTACATIKHMALGVYGF----GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEG  250 (318)
Q Consensus       175 ~~~~yl~~iiP~l~~~l~~~~~~~R~~a~~~i~~la~~~~~~----~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~  250 (318)
                      .........+|.+.+++.+.+..++..++.+++.++..-...    .....+..+...+...  .+.++++..++.++..
T Consensus       259 ~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~--~~~~~~~~~a~~aL~~  336 (529)
T d1jdha_         259 TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA--GDREDITEPAICALRH  336 (529)
T ss_dssp             TTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred             cchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhh--hcchhHHHHHHHHhhc
Confidence            222233678899999999999999999999998886421100    0012233333332211  2456777777777766


Q ss_pred             HH
Q psy10471        251 LR  252 (318)
Q Consensus       251 i~  252 (318)
                      ++
T Consensus       337 l~  338 (529)
T d1jdha_         337 LT  338 (529)
T ss_dssp             HT
T ss_pred             cc
Confidence            54

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.29  E-value=1.6e-06  Score=65.04  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=67.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHH
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLA  109 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~  109 (318)
                      -++.+++.++|+++.||..|+++||.+..        ....+.   |.+.|+|+++.||.+|++++|.+    |+...++
T Consensus        23 ~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~---L~~~l~d~~~~VR~~a~~aL~~i----~~~~~~~   87 (111)
T d1te4a_          23 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEP---LIKLLEDDSGFVRSGAARSLEQI----GGERVRA   87 (111)
T ss_dssp             THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHH---HHHHHHHCCTHHHHHHHHHHHHH----CSHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHH---HHhhhccchhHHHHHHHHHHHHh----CccchHH
Confidence            35567789999999999999999997643        223333   45667999999999999999975    5567888


Q ss_pred             HHHHhhcccchhhHHHHHHHH
Q psy10471        110 TLLNNLKVQERQNRVCTTVAI  130 (318)
Q Consensus       110 ~Ll~~Lk~~~~~~R~~~~~ai  130 (318)
                      .|...+++++..+|.....++
T Consensus        88 ~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          88 AMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHHcCCCHHHHHHHHHHH
Confidence            888888888888888877765

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.27  E-value=4e-05  Score=76.50  Aligned_cols=207  Identities=11%  Similarity=0.079  Sum_probs=132.9

Q ss_pred             hhhhHHHHHHHHHHHhccC-----cC----CChHhHHHHHHhhc---CCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH
Q psy10471          4 DKNLGIKIVQQIAILMGCA-----IL----PHLKNLVEIIEHGL---VDEQQKVQENCIDLVGRIADRGPEYVSAREWMR   71 (318)
Q Consensus         4 ~r~~~l~~i~~La~~~g~~-----~~----P~l~~l~~~l~~~l---~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~   71 (318)
                      .|.+++.++|.++...+..     -.    +-.+-+.+.+.|.+   .+.++.+|..+++++|+.++...    .+.+..
T Consensus       421 ~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~----~~~~~~  496 (959)
T d1wa5c_         421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIE  496 (959)
T ss_dssp             HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhcc----HHHHHH
Confidence            3678888888888754431     11    12222344444544   33568899999999999988533    455666


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHhh---------------hCHH--HHHHHHHHhhcccch-----hhHHHHHHH
Q psy10471         72 ICFELLELLKAHKKAIRRATVNTFGYIAKA---------------IGPH--DVLATLLNNLKVQER-----QNRVCTTVA  129 (318)
Q Consensus        72 il~~Ll~~L~d~~~~vR~~av~~lg~la~~---------------igp~--~~l~~Ll~~Lk~~~~-----~~R~~~~~a  129 (318)
                      ++..+++.|++++..||..|.+++..+.+.               +.|+  .++..|+..+.....     .....+..+
T Consensus       497 ~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~  576 (959)
T d1wa5c_         497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRS  576 (959)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHH
T ss_pred             HHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            777788999998889999999999988753               3344  455566665542222     122235566


Q ss_pred             HHHHH----hhcCcc--cchHHHHHHh----cCCc-chHHHHHHHHHHHHHHHHccc-cccchhhhHHHHHHHHhcCCHH
Q psy10471        130 IAIVA----ETCSPF--TVLPALMNEY----RVPE-LNVQNGVLKALSFLFEYIGEM-GKDYIYAVTPLLEDALMDRDLV  197 (318)
Q Consensus       130 i~~i~----~~~~p~--~vip~L~~~~----~d~~-~~v~~~vl~al~~i~~~lg~~-~~~yl~~iiP~l~~~l~~~~~~  197 (318)
                      ++.+.    +...|+  .+++.+.+.+    +++. ......++++++.+....|.. +..+.+.++|.+...+......
T Consensus       577 l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~  656 (959)
T d1wa5c_         577 IFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQE  656 (959)
T ss_dssp             HHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchh
Confidence            65444    344464  5666665544    3332 334467888888888776653 4566688999999999776666


Q ss_pred             HHHHHHHHHHHHhhhhc
Q psy10471        198 HRQTACATIKHMALGVY  214 (318)
Q Consensus       198 ~R~~a~~~i~~la~~~~  214 (318)
                      +...+.++++.+....+
T Consensus       657 ~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         657 FIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             THHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhCC
Confidence            66666777666655543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9.3e-06  Score=70.01  Aligned_cols=179  Identities=13%  Similarity=0.162  Sum_probs=117.2

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCCCChhhHHHH--HHHHH-HHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHHHHhhccc
Q psy10471         42 QQKVQENCIDLVGRIADRGPEYVSAREWMRI--CFELL-ELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQ  118 (318)
Q Consensus        42 ~~~vR~aa~~~LG~la~~~~~~i~~~~~~~i--l~~Ll-~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~Ll~~Lk~~  118 (318)
                      +..+|..|+.+|..+++....   ...+..+  +..++ .+++++++.+|..|.+++|.++.. .|. .-..++.     
T Consensus        30 ~~~~~~~Al~~L~~L~~~~d~---a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~-~~~-~~~~~~~-----   99 (264)
T d1xqra1          30 DQQEREGALELLADLCENMDN---AADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAA-IQEQVLG-----   99 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHH---HHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHH-HHHHHHH-----
T ss_pred             CHHHHHHHHHHHHHHHcCHHH---HHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHH-HHHHHHH-----
Confidence            456789999999999964221   1121111  22233 355678888999999999999963 222 0000000     


Q ss_pred             chhhHHHHHHHHHHHHhhcCcccchHHHHHHh-cCCcchHHHHHHHHHHHHHHHHccccccch-hhhHHHHHHHHhcCCH
Q psy10471        119 ERQNRVCTTVAIAIVAETCSPFTVLPALMNEY-RVPELNVQNGVLKALSFLFEYIGEMGKDYI-YAVTPLLEDALMDRDL  196 (318)
Q Consensus       119 ~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~-~d~~~~v~~~vl~al~~i~~~lg~~~~~yl-~~iiP~l~~~l~~~~~  196 (318)
                                           ..++|.|++.+ ++++.+++..++.++..++..-......+. ...+|.+.+++.+.+.
T Consensus       100 ---------------------~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~  158 (264)
T d1xqra1         100 ---------------------LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ  158 (264)
T ss_dssp             ---------------------TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred             ---------------------cCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCch
Confidence                                 14667777777 456678888888888888754332222233 4578999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCchhHHHH--HHHhhhhcccCCChHHHHHHHHHHHHHHH
Q psy10471        197 VHRQTACATIKHMALGVYGFGCEDALTH--LLNYVWPNIFETSPHLVQAFMDAVEGLRV  253 (318)
Q Consensus       197 ~~R~~a~~~i~~la~~~~~~~~~~~i~h--ll~~l~~~i~d~~~~vr~~ii~~i~~i~~  253 (318)
                      .++..++.++..++..-.  +....+..  ..+.+...+.++++++|..++.++..++.
T Consensus       159 ~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         159 KLKVKSAFLLQNLLVGHP--EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHHHHHHHHHHHHHHHCG--GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhccH--HHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            999999999998876532  11111111  34555566677889999999999998864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=0.00032  Score=62.09  Aligned_cols=93  Identities=14%  Similarity=0.099  Sum_probs=62.2

Q ss_pred             hhhHHHHHHHHHHHhcc-CcCCChH--hHHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHH--HHHHHHHH
Q psy10471          5 KNLGIKIVQQIAILMGC-AILPHLK--NLVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMR--ICFELLEL   79 (318)
Q Consensus         5 r~~~l~~i~~La~~~g~-~~~P~l~--~l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~--il~~Ll~~   79 (318)
                      |..+.++|+.|+.  +. ..+-.+.  ..+|.++.+|+++++.+|..|+.+|+.++....+.-  ..+..  .+..++..
T Consensus        19 ~~~a~~~l~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~--~~i~~~g~v~~li~~   94 (457)
T d1xm9a1          19 QAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK--LETRRQNGIREAVSL   94 (457)
T ss_dssp             HHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH--HHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH--HHHHHCCChHHHHHH
Confidence            5577888888875  43 3344443  347888899999999999999999999985433210  11110  12335555


Q ss_pred             hhh-chHHHHHHHHHHHHHHHhh
Q psy10471         80 LKA-HKKAIRRATVNTFGYIAKA  101 (318)
Q Consensus        80 L~d-~~~~vR~~av~~lg~la~~  101 (318)
                      ++. .+..+|..|.++++.++..
T Consensus        95 l~~~~~~~~~~~a~~~l~~l~~~  117 (457)
T d1xm9a1          95 LRRTGNAEIQKQLTGLLWNLSST  117 (457)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HhccCcHHHHHHHHHHHHHHHhh
Confidence            555 5677888888888887653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.0001  Score=65.46  Aligned_cols=69  Identities=10%  Similarity=0.096  Sum_probs=54.1

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHH--HHHHHHHHHhhhchHHHHHHHHHHHHHHHh
Q psy10471         30 LVEIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWM--RICFELLELLKAHKKAIRRATVNTFGYIAK  100 (318)
Q Consensus        30 l~~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~--~il~~Ll~~L~d~~~~vR~~av~~lg~la~  100 (318)
                      .+|.++..|++++|.+|..|+.+||.+|....+.  -..+.  ..+..|+++|+++++.+|..|+.+++.++.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESA--KQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSH--HHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHH--HHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            4789999999999999999999999999644331  11111  124556788899999999999999999984

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.62  E-value=2.3e-06  Score=73.38  Aligned_cols=140  Identities=14%  Similarity=0.085  Sum_probs=84.9

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhhCHHHHHHHH
Q psy10471         32 EIIEHGLVDEQQKVQENCIDLVGRIADRGPEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATL  111 (318)
Q Consensus        32 ~~l~~~l~d~~~~vR~aa~~~LG~la~~~~~~i~~~~~~~il~~Ll~~L~d~~~~vR~~av~~lg~la~~igp~~~l~~L  111 (318)
                      ..++++++|+++.||++++..||       ..        .   |..+++|++..||..+...+       ++    ..|
T Consensus        69 ~~L~~Ll~D~d~~VR~~AA~~Lp-------~~--------~---L~~L~~D~d~~VR~~aa~~l-------~~----~~L  119 (233)
T d1lrva_          69 EALTPLIRDSDEVVRRAVAYRLP-------RE--------Q---LSALMFDEDREVRITVADRL-------PL----EQL  119 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSC-------SG--------G---GGGTTTCSCHHHHHHHHHHS-------CT----GGG
T ss_pred             HHHHHHhcCCCHHHHHHHHHHcC-------HH--------H---HHHHhcCCChhHHHHHHhcc-------CH----HHH
Confidence            34667889999999998887654       10        1   33556788888888776543       22    234


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCCcchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHH
Q psy10471        112 LNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL  191 (318)
Q Consensus       112 l~~Lk~~~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l  191 (318)
                      ...+++++..+|..++.++        |   .+.|....+|++.+|+..+.+.       ++          .|.+..++
T Consensus       120 ~~Ll~D~d~~VR~~aa~~~--------~---~~~L~~L~~D~d~~VR~~aA~~-------~~----------~~~L~~l~  171 (233)
T d1lrva_         120 EQMAADRDYLVRAYVVQRI--------P---PGRLFRFMRDEDRQVRKLVAKR-------LP----------EESLGLMT  171 (233)
T ss_dssp             GGGTTCSSHHHHHHHHHHS--------C---GGGGGGTTTCSCHHHHHHHHHH-------SC----------GGGGGGST
T ss_pred             HHHhcCCCHHHHHHHHhcc--------c---hhHHHHHhcCCCHHHHHHHHHh-------cC----------HHHHHHHc
Confidence            5556777778888777642        1   1224445577888887765542       22          13455566


Q ss_pred             hcCCHHHHHHHHHHHHHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHH
Q psy10471        192 MDRDLVHRQTACATIKHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMD  246 (318)
Q Consensus       192 ~~~~~~~R~~a~~~i~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~  246 (318)
                      ++.++.+|..++..++     .             +.+.....|++..||..+.+
T Consensus       172 ~D~d~~VR~~aa~~L~-----~-------------~~L~~l~~D~d~~VR~aaae  208 (233)
T d1lrva_         172 QDPEPEVRRIVASRLR-----G-------------DDLLELLHDPDWTVRLAAVE  208 (233)
T ss_dssp             TCSSHHHHHHHHHHCC-----G-------------GGGGGGGGCSSHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhcC-----c-------------HHHHHHHhCCCHHHHHHHHH
Confidence            7788888877775431     0             11233445677777776653

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=96.66  E-value=0.03  Score=49.42  Aligned_cols=172  Identities=10%  Similarity=0.078  Sum_probs=108.2

Q ss_pred             ChHhHHHHHHhhcCC----CCHHHHHHHHHHHHHHHhhCC---CCCChhhHHHHHHH-HHHHhhhchHHHHHHHHHHHHH
Q psy10471         26 HLKNLVEIIEHGLVD----EQQKVQENCIDLVGRIADRGP---EYVSAREWMRICFE-LLELLKAHKKAIRRATVNTFGY   97 (318)
Q Consensus        26 ~l~~l~~~l~~~l~d----~~~~vR~aa~~~LG~la~~~~---~~i~~~~~~~il~~-Ll~~L~d~~~~vR~~av~~lg~   97 (318)
                      +-.+++..+.+++++    .+|.+|.++..++|.++....   +.- ..++.+-+.. +-+..+..+...+..+++++|.
T Consensus       120 Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  198 (336)
T d1lsha1         120 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN  198 (336)
T ss_dssp             CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhc
Confidence            455677888888876    478999999999999886432   111 3333333332 2233344455567789999998


Q ss_pred             HHhhhCHHHHHHHHHHhhccc-------chhhHHHHHHHHHHHHhhcCcccchHHHHHHhcCC--cchHHHHHHHHHHHH
Q psy10471         98 IAKAIGPHDVLATLLNNLKVQ-------ERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVP--ELNVQNGVLKALSFL  168 (318)
Q Consensus        98 la~~igp~~~l~~Ll~~Lk~~-------~~~~R~~~~~ai~~i~~~~~p~~vip~L~~~~~d~--~~~v~~~vl~al~~i  168 (318)
                      ++.   | ..++.+...+.++       ....|...+.|+..++.. .|..+-+.++.+|.+.  +.++|.+++..++..
T Consensus       199 ~g~---p-~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~-~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t  273 (336)
T d1lsha1         199 AGQ---P-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-DPRKVQEIVLPIFLNVAIKSELRIRSCIVFFES  273 (336)
T ss_dssp             HTC---G-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred             cCC---H-hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc-CcHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            763   2 3567777777543       125788888887666554 3667888888888665  467887666655431


Q ss_pred             HHHHccccccchhhhHHHHHHHH-hcCCHHHHHHHHHHHHHHhhh
Q psy10471        169 FEYIGEMGKDYIYAVTPLLEDAL-MDRDLVHRQTACATIKHMALG  212 (318)
Q Consensus       169 ~~~lg~~~~~yl~~iiP~l~~~l-~~~~~~~R~~a~~~i~~la~~  212 (318)
                              .|-.. ++-.+.+.+ .+.+..|+....+.+..++..
T Consensus       274 --------~P~~~-~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         274 --------KPSVA-LVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             --------CCCHH-HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             --------CCCHH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence                    22222 223333333 567777777777777666554

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.91  E-value=0.0022  Score=54.16  Aligned_cols=21  Identities=19%  Similarity=0.270  Sum_probs=15.2

Q ss_pred             HHHhhcCCCCHHHHHHHHHHH
Q psy10471         33 IIEHGLVDEQQKVQENCIDLV   53 (318)
Q Consensus        33 ~l~~~l~d~~~~vR~aa~~~L   53 (318)
                      .+..+++|+++.||.+++..+
T Consensus        94 ~L~~L~~D~d~~VR~~aa~~l  114 (233)
T d1lrva_          94 QLSALMFDEDREVRITVADRL  114 (233)
T ss_dssp             GGGGTTTCSCHHHHHHHHHHS
T ss_pred             HHHHHhcCCChhHHHHHHhcc
Confidence            356677888888888877654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.09  E-value=0.38  Score=41.91  Aligned_cols=173  Identities=14%  Similarity=0.138  Sum_probs=101.7

Q ss_pred             hhHHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHhhhC------HHHHHHHHHHhh----cccchhhHHHHHHHHHHHHh
Q psy10471         67 REWMRICFELLELLKA-HKKAIRRATVNTFGYIAKAIG------PHDVLATLLNNL----KVQERQNRVCTTVAIAIVAE  135 (318)
Q Consensus        67 ~~~~~il~~Ll~~L~d-~~~~vR~~av~~lg~la~~ig------p~~~l~~Ll~~L----k~~~~~~R~~~~~ai~~i~~  135 (318)
                      ++.+..+..+++.-+. +++.+|..++=++|.++...=      +.+++..+.+.+    ..++...+.....|+|..+ 
T Consensus       122 ~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-  200 (336)
T d1lsha1         122 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-  200 (336)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-
Confidence            4555555544422222 456788999999988776421      122333333333    2223334444555665443 


Q ss_pred             hcCcccchHHHHHHhcCC-------cchHHHHHHHHHHHHHHHHccccccchhhhHHHHHHHHhc--CCHHHHHHHHHHH
Q psy10471        136 TCSPFTVLPALMNEYRVP-------ELNVQNGVLKALSFLFEYIGEMGKDYIYAVTPLLEDALMD--RDLVHRQTACATI  206 (318)
Q Consensus       136 ~~~p~~vip~L~~~~~d~-------~~~v~~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l~~--~~~~~R~~a~~~i  206 (318)
                        .| .+++.+...+.+.       +..+|..+++|+..+...       +=..+.+.+..++.+  .+..+|-.|..++
T Consensus       201 --~p-~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~-------~p~~v~~~l~~i~~n~~e~~EvRiaA~~~l  270 (336)
T d1lsha1         201 --QP-NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-------DPRKVQEIVLPIFLNVAIKSELRIRSCIVF  270 (336)
T ss_dssp             --CG-GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-------CHHHHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             --CH-hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhc-------CcHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence              22 4566666666442       345677777777654331       112344555566544  4589999888887


Q ss_pred             HHHhhhhcCCCchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcChhh
Q psy10471        207 KHMALGVYGFGCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALGPVR  259 (318)
Q Consensus       207 ~~la~~~~~~~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG~~~  259 (318)
                      ...-      ...+.++++..++.   .|++.+|+..+...|..++..-.|+.
T Consensus       271 m~t~------P~~~~l~~i~~~l~---~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         271 FESK------PSVALVSMVAVRLR---REPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             HHTC------CCHHHHHHHHHHHT---TCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HhcC------CCHHHHHHHHHHHH---hCcHHHHHHHHHHHHHHHHhCCCcch
Confidence            4332      23456777777753   46899999999999999988766543

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.26  E-value=7.9  Score=32.95  Aligned_cols=141  Identities=10%  Similarity=0.029  Sum_probs=93.3

Q ss_pred             HHHHhcCCcchHH-HHHHHHHHHHHHHHccccccchhhhHHHHHHHH----hc---CCHHHHHHHHHHHHHHhhhhcCC-
Q psy10471        146 LMNEYRVPELNVQ-NGVLKALSFLFEYIGEMGKDYIYAVTPLLEDAL----MD---RDLVHRQTACATIKHMALGVYGF-  216 (318)
Q Consensus       146 L~~~~~d~~~~v~-~~vl~al~~i~~~lg~~~~~yl~~iiP~l~~~l----~~---~~~~~R~~a~~~i~~la~~~~~~-  216 (318)
                      .+..|+...+..| ..++..++.++..+|..+.++++.|.-.+....    ++   .-|.+|.....++..+...+-.. 
T Consensus        78 vL~DY~~~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~l  157 (321)
T d1w9ca_          78 VLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAF  157 (321)
T ss_dssp             HHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             HHHHHHhCchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHH
Confidence            4445655556666 679999999999999888888876644443332    22   34999999999999998776311 


Q ss_pred             --CchhHHHHHHHhhhhcccCCChHHHHHHHHHHHHHHHHcC------hhhHHHhHHHHhcc--------ccccchHHHH
Q psy10471        217 --GCEDALTHLLNYVWPNIFETSPHLVQAFMDAVEGLRVALG------PVRILQYVLQGLFH--------PARKVRDVYW  280 (318)
Q Consensus       217 --~~~~~i~hll~~l~~~i~d~~~~vr~~ii~~i~~i~~alG------~~~~~~~vl~~l~~--------~a~~~r~~~w  280 (318)
                        =..+.+..+...+.=.+++++.++....++.+..+..-+.      .+++..|.++.+.|        .++..-+-..
T Consensus       158 l~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~  237 (321)
T d1w9ca_         158 LAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHTAGLTMHA  237 (321)
T ss_dssp             HHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHH
Confidence              0134555666555667788999998888888866665442      24677777777633        3333344455


Q ss_pred             HHHHHh
Q psy10471        281 KIYNSL  286 (318)
Q Consensus       281 ~i~~~~  286 (318)
                      .++..+
T Consensus       238 ~iL~~L  243 (321)
T d1w9ca_         238 SILAYM  243 (321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444