Psyllid ID: psy10473

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
VGTGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccccccccccccccccccccccHHcccccEEEEEEEccHHHHHHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccHHHcHHHHHHccccccccEEEEc
Coil and Loop (DISEMBL)
vgtghigvydkeqdsekkldstyhcpqasrlhilhmdpsiAVCFLCKTENDFASLCSQIRAElrpeqqplfeliedpiedwtptqprpsnlggtsspscssmrrqprrvsgvgegsdddfeflg
Flexible Loop (DISEMBL)
vgtghigvydkeqdsekkldSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEdwtptqprpsnlggtsspscssmrrqprrvsgvgegsdddfeflg
Low Complexity Region (SEG)
VGTGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG
Disordered region (IsUnstruct)
**********************YHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR*****LFELI**************************************************
Disordered Region (DISOPRED)
***GHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQI********Q*LFELIE***************************************GSDDDFEFLG
Disordered Region (DISEMBL)
VGTGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPR****************************SDDDFEFLG
Disordered Region (DISPRO)
*****I*********EKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTP*************************VS*VGEGSDDDF*FLG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VGTGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q5R699	398	Cysteine protease ATG4A O	yes	N/A	0.540	0.168	0.411	7e-10
Q8WYN0	398	Cysteine protease ATG4A O	yes	N/A	0.540	0.168	0.411	8e-10
Q6PZ05	398	Cysteine protease ATG4A O	yes	N/A	0.540	0.168	0.426	9e-10
Q8C9S8	396	Cysteine protease ATG4A O	yes	N/A	0.540	0.169	0.411	2e-09
Q6DG88	394	Cysteine protease ATG4B O	yes	N/A	0.758	0.238	0.323	5e-08
Q9Y4P1	393	Cysteine protease ATG4B O	no	N/A	0.758	0.239	0.339	2e-07
Q6PZ03	393	Cysteine protease ATG4B O	no	N/A	0.758	0.239	0.330	3e-07
Q8BGE6	393	Cysteine protease ATG4B O	no	N/A	0.758	0.239	0.339	6e-07
Q5ZIW7	380	Cysteine protease ATG4A O	yes	N/A	0.451	0.147	0.413	6e-07
Q6GPU1	397	Cysteine protease ATG4A O	N/A	N/A	0.435	0.136	0.428	2e-06

>sp|Q5R699|ATG4A_PONAB Cysteine protease ATG4A OS=Pongo abelii GN=ATG4A PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q+  R++IL++DPS+A+ F CK E DF + CS ++ E+  E   +FEL++   
Sbjct: 297 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 356

Query: 79  EDWTPTQP 86
             W P  P
Sbjct: 357 SHWPPFVP 364

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q8WYN0|ATG4A_HUMAN Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q+  R++IL++DPS+A+ F CK E DF + CS ++ E+  E   +FEL++   
Sbjct: 297 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 356

Query: 79  EDWTPTQP 86
             W P  P
Sbjct: 357 SHWPPFVP 364

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ05|ATG4A_BOVIN Cysteine protease ATG4A OS=Bos taurus GN=ATG4A PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q   R++IL++DPS+A+ F CK E DF S CS ++ E+  E   +FEL++   
Sbjct: 297 DQTFHCLQPPQRMNILNLDPSVALGFFCKEEKDFDSWCSLVQKEILKENLRMFELVQKHP 356

Query: 79  EDWTPTQP 86
             W P  P
Sbjct: 357 SHWPPFVP 364

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8C9S8|ATG4A_MOUSE Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q+  R+ IL++DPS+A+ F CK E DF + CS ++ E+  E   +FEL++   
Sbjct: 294 DQTFHCLQSPQRMSILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 353

Query: 79  EDWTPTQP 86
             W P  P
Sbjct: 354 SHWPPFVP 361

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes. Preferred substrate is GABARAPL2 followed by MAP1LC3A and GABARAP.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6DG88|ATG4B_DANRE Cysteine protease ATG4B OS=Danio rerio GN=atg4b PE=2 SV=2

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D +YHC     R+HI  +DPSIA  F C+TE+DF   C+QIR        P+FEL++   
Sbjct: 298 DDSYHCQHPPCRMHICELDPSIAAGFFCQTEDDFDDWCAQIRKVSNCRGLPMFELVDS-- 355

Query: 79  EDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                   +PS+L      + +       R+    +  D++FE L
Sbjct: 356 --------QPSHLITADVLNLTPDFSDSDRLERFFDSEDEEFEIL 392

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9Y4P1|ATG4B_HUMAN Cysteine protease ATG4B OS=Homo sapiens GN=ATG4B PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIEDP 77
           D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+FEL+E  
Sbjct: 296 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVE-- 353

Query: 78  IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                    +PS+L      + S       R+    +  D+DFE L
Sbjct: 354 --------LQPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEIL 391

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6PZ03|ATG4B_BOVIN Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQI-RAELRPEQQPLFELIEDP 77
           D ++HC     R+ I  +DPSIAV F C+TE+DF   C Q+ +  L     P+FEL+E  
Sbjct: 296 DESFHCQHPPGRMSIAELDPSIAVGFFCETEDDFNDWCQQVSKLSLLGGALPMFELVEQ- 354

Query: 78  IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                    +PS+L      + S       R+    +  D+DFE L
Sbjct: 355 ---------QPSHLACPDVLNLSLDSSDAERLERFFDSEDEDFEIL 391

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8BGE6|ATG4B_MOUSE Cysteine protease ATG4B OS=Mus musculus GN=Atg4b PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFELIEDP 77
           D ++HC    SR+ I  +DPSIAV F CKTE DF   C Q++   +     P+FEL+E  
Sbjct: 296 DESFHCQHPPSRMGIGELDPSIAVGFFCKTEEDFNDWCQQVKKLSQLGGALPMFELVEQ- 354

Query: 78  IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                    +PS+L      + S       R+    +  D+DFE L
Sbjct: 355 ---------QPSHLACQDVLNLSLDSSDVERLERFFDSEDEDFEIL 391

Cysteine protease required for autophagy, which cleaves the C-terminal part of either MAP1LC3, GABARAPL2 or GABARAP, allowing the liberation of form I. A subpopulation of form I is subsequently converted to a smaller form (form II). Form II, with a revealed C-terminal glycine, is considered to be the phosphatidylethanolamine (PE)-conjugated form, and has the capacity for the binding to autophagosomes.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q5ZIW7|ATG4A_CHICK Cysteine protease ATG4A OS=Gallus gallus GN=ATG4A PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 40/58 (68%), Gaps = 2/58 (3%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ-PLFELIE 75
           D ++HC QA  R+ I+++DPS+A+ F CK E DF + CS ++ E+  +Q   +FEL++
Sbjct: 280 DQSFHCQQAPHRMKIMNLDPSVALGFFCKEECDFDNWCSLVQKEILKQQSLRMFELVQ 337

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6GPU1|ATG4A_XENLA Cysteine protease ATG4A OS=Xenopus laevis GN=atg4a PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ-PLFEL 73
           D TYHC +  + + +L++DPS+A+ F CK ENDF + C  I  E+   Q   +FEL
Sbjct: 297 DQTYHCQKGPNSMKVLNLDPSVALGFFCKDENDFNNWCEVIEKEILKHQSLRMFEL 352

Cysteine protease required for autophagy, which is able to cleave the C-terminal part of proteins that may be subsequently converted to a smaller form, with a revealed C-terminal glycine, considered to be the phosphatidylethanolamine (PE)-conjugated form. This conjugated form has the capacity for the binding to autophagosomes.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
340709297	386	PREDICTED: cysteine protease ATG4B-like	0.854	0.274	0.381	8e-16
340709295	383	PREDICTED: cysteine protease ATG4B-like	0.854	0.276	0.381	1e-15
322795203	403	hypothetical protein SINV_08608 [Solenop	0.887	0.272	0.411	2e-15
91083193	366	PREDICTED: similar to Autophagy-specific	0.532	0.180	0.582	2e-15
350425106	383	PREDICTED: cysteine protease ATG4B-like	0.919	0.297	0.390	2e-15
383861144	384	PREDICTED: cysteine protease ATG4B-like	0.879	0.283	0.4	6e-15
357620505	383	putative Autophagy-specific protein [Dan	0.620	0.201	0.519	9e-15
332029697	383	Cysteine protease ATG4B [Acromyrmex echi	0.887	0.287	0.394	9e-15
332375955	370	unknown [Dendroctonus ponderosae]	0.725	0.243	0.467	1e-14
209969827	405	autophagy-specific gene 4 [Nasonia vitri	0.798	0.244	0.413	1e-14

>gi|340709297|ref|XP_003393247.1| PREDICTED: cysteine protease ATG4B-like isoform 2 [Bombus terrestris]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 25/131 (19%)

Query: 3   TGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAE 62
           +G +G   K ++ E ++D+TYHC  +SR+ I  +DPS+A+CF C TE DF SLC  I+ E
Sbjct: 272 SGSVG--KKLEEEEIEMDATYHCKSSSRIPITGIDPSVALCFFCATEKDFKSLCKSIQEE 329

Query: 63  L-RPEQQPLFELIEDPIEDWTPTQPRPSNLGGTSS--------PSCSSMRRQPRRVSGVG 113
           L  PE+QPL EL  + +  W+P +   S    TS+        P C +            
Sbjct: 330 LITPEKQPLLELCAERLAQWSPVEDIASEAIATSTFVDFEHIDPQCDT------------ 377

Query: 114 EGSDDDFEFLG 124
             SD+DFE LG
Sbjct: 378 --SDEDFELLG 386

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709295|ref|XP_003393246.1| PREDICTED: cysteine protease ATG4B-like isoform 1 [Bombus terrestris]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 25/131 (19%)

Query: 3   TGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAE 62
           +G +G   K ++ E ++D+TYHC  +SR+ I  +DPS+A+CF C TE DF SLC  I+ E
Sbjct: 269 SGSVG--KKLEEEEIEMDATYHCKSSSRIPITGIDPSVALCFFCATEKDFKSLCKSIQEE 326

Query: 63  L-RPEQQPLFELIEDPIEDWTPTQPRPSNLGGTSS--------PSCSSMRRQPRRVSGVG 113
           L  PE+QPL EL  + +  W+P +   S    TS+        P C +            
Sbjct: 327 LITPEKQPLLELCAERLAQWSPVEDIASEAIATSTFVDFEHIDPQCDT------------ 374

Query: 114 EGSDDDFEFLG 124
             SD+DFE LG
Sbjct: 375 --SDEDFELLG 383

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795203|gb|EFZ18025.1| hypothetical protein SINV_08608 [Solenopsis invicta]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 67/119 (56%), Gaps = 9/119 (7%)

Query: 8   VYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPE 66
           V DK  + E ++D TYHC  ASR+ I  MDPS+A+CF C TE +F SLC  ++ EL  PE
Sbjct: 292 VEDKISEEEIEMDITYHCKSASRIPITGMDPSVALCFFCATEKEFMSLCKSMQEELILPE 351

Query: 67  QQPLFELIEDPIEDWTPTQPRPSN-LGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG 124
           +QPLFEL  + +  W+      S  +  +S      + RQ        + SD+DFE LG
Sbjct: 352 KQPLFELCTERLAHWSSADDAVSEAIAASSFVDFEHIERQY-------DTSDEDFELLG 403

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083193|ref|XP_972923.1| PREDICTED: similar to Autophagy-specific protein, putative [Tribolium castaneum] gi|270006970|gb|EFA03418.1| hypothetical protein TcasGA2_TC013405 [Tribolium castaneum]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 49/67 (73%), Gaps = 1/67 (1%)

Query: 19  LDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPEQQPLFELIEDP 77
           LDSTYHC  ASR++IL MDPS+AVCF C TE +F  LC  I+ +L  PE+QPLFE+  + 
Sbjct: 275 LDSTYHCKYASRINILSMDPSVAVCFFCNTEGEFNDLCHSIKKDLIEPEKQPLFEITYEK 334

Query: 78  IEDWTPT 84
            + WTPT
Sbjct: 335 PKQWTPT 341

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350425106|ref|XP_003494013.1| PREDICTED: cysteine protease ATG4B-like [Bombus impatiens]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 9/123 (7%)

Query: 3   TGHIGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAE 62
           +G +G   K ++ E ++D+TYHC  +SR+ I  +DPS+A+CF C TE DF SLC  I+ E
Sbjct: 269 SGSVG--KKLEEEEIEMDATYHCKSSSRIPITGIDPSVALCFFCATEKDFKSLCKSIQEE 326

Query: 63  L-RPEQQPLFELIEDPIEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFE 121
           L  PE+QPL EL  + +  W+P +   S    TS+            +    + SD+DFE
Sbjct: 327 LITPEKQPLLELCAERLAQWSPVEDIASEAIATST------FVDFEHIDPQYDTSDEDFE 380

Query: 122 FLG 124
            LG
Sbjct: 381 LLG 383

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861144|ref|XP_003706046.1| PREDICTED: cysteine protease ATG4B-like [Megachile rotundata]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 6/115 (5%)

Query: 11  KEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPEQQP 69
           K ++ E ++D+TYHC  ASR+ I  +DPS+A+CF C TE DF SLC  I+ EL  PE+QP
Sbjct: 275 KLEEEEIEMDATYHCKFASRIPITGIDPSVALCFFCATERDFKSLCKVIQEELITPEKQP 334

Query: 70  LFELIEDPIEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG 124
           L EL  + +  W+P +   ++    ++PS          +    + SD+DFE LG
Sbjct: 335 LLELCAERLAQWSPAEDVAAS-EAIAAPSFVDF----EHIDPQYDTSDEDFELLG 384

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620505|gb|EHJ72670.1| putative Autophagy-specific protein [Danaus plexippus]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 49/77 (63%)

Query: 8   VYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQ 67
           V +K  D +K++D TYHC  ASR+ IL MDPS+AVCFLC+T +DF  LC  I   L  E 
Sbjct: 275 VENKLTDEQKEMDCTYHCKYASRIPILSMDPSVAVCFLCRTRSDFDELCELIEKRLMQES 334

Query: 68  QPLFELIEDPIEDWTPT 84
           QPLFE+ E     W P 
Sbjct: 335 QPLFEICEKRPSHWGPN 351

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029697|gb|EGI69576.1| Cysteine protease ATG4B [Acromyrmex echinatior]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 9/119 (7%)

Query: 8   VYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPE 66
           + DK  + E ++D +YHC  ASR+ I  MDPS+A+CF C TE +F SLC  ++ EL  PE
Sbjct: 272 IEDKISEEEIEMDISYHCKSASRIPITGMDPSVALCFFCATEKEFKSLCKSMQEELILPE 331

Query: 67  QQPLFELIEDPIEDWTPTQPRPSN-LGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG 124
           +QPLFEL  + +  W+      S  +  +S      + RQ        + SD+DFE LG
Sbjct: 332 KQPLFELCTERLAHWSSADDAVSEAVAASSFVDFEHIERQY-------DTSDEDFELLG 383

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375955|gb|AEE63118.1| unknown [Dendroctonus ponderosae]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 2/92 (2%)

Query: 8   VYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPE 66
           V +K+   EK +D +YHC  ASR+ +L MDPS+AVCFLC++E DF  LC  I+ +L + E
Sbjct: 272 VGNKDTSEEKDVDLSYHCKHASRMSMLGMDPSVAVCFLCRSEADFNDLCQNIKDQLIKTE 331

Query: 67  QQPLFELIEDPIEDWTPTQPRPSNLGGTSSPS 98
            QPLFE+  +  E+W  T     NL G S  S
Sbjct: 332 SQPLFEVSFERTEEWLST-VEELNLSGLSDQS 362

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209969827|ref|NP_001123274.2| autophagy-specific gene 4 [Nasonia vitripennis]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 65/116 (56%), Gaps = 17/116 (14%)

Query: 11  KEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAEL-RPEQQP 69
           K  D+E ++D+TYHC  ASR+ I  MDPS+A+CF C TE DF SLC  ++ EL   E+QP
Sbjct: 305 KSDDNEAEVDATYHCKIASRIPITGMDPSVALCFFCATEKDFMSLCRLMQDELIGNEKQP 364

Query: 70  LFELIEDPIEDWTPTQPRPSN-LGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFLG 124
           LFEL ++    W+P +   +  LG T+S                   SD+ FE LG
Sbjct: 365 LFELCQERPASWSPAEDVAAEALGATAS---------------TWPASDEGFELLG 405

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
UNIPROTKB|F5H3G3	259	ATG4A "Cysteine protease ATG4A	0.612	0.293	0.384	5.3e-11
FB|FBgn0031298	411	Atg4 "Autophagy-specific gene	0.629	0.189	0.417	1e-10
UNIPROTKB|E2RLY1	399	ATG4A "Uncharacterized protein	0.540	0.167	0.426	1.2e-10
UNIPROTKB|Q6PZ05	398	ATG4A "Cysteine protease ATG4A	0.612	0.190	0.397	1.6e-10
UNIPROTKB|A6QLH1	398	ATG4A "ATG4 autophagy related	0.540	0.168	0.426	2e-10
UNIPROTKB|Q8WYN0	398	ATG4A "Cysteine protease ATG4A	0.612	0.190	0.384	2e-10
UNIPROTKB|K7GPU1	278	LOC100156732 "Uncharacterized	0.540	0.241	0.411	2.7e-10
UNIPROTKB|K7GK67	325	LOC100156732 "Uncharacterized	0.540	0.206	0.411	4.4e-10
UNIPROTKB|Q5ZIW7	380	ATG4A "Cysteine protease ATG4A	0.612	0.2	0.367	6.1e-09
UNIPROTKB|F1PAF7	319	ATG4B "Uncharacterized protein	0.758	0.294	0.358	6.9e-09

UNIPROTKB|F5H3G3 ATG4A "Cysteine protease ATG4A" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 5.3e-11, P = 5.3e-11
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query:    10 DKEQDSEKKLDSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ 68
             D E++     D T+HC Q+  R++IL++DPS+A+ F CK E DF + CS ++ E+  E  
Sbjct:   149 DTEENGTVN-DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENL 207

Query:    69 PLFELIEDPIEDWTPTQP 86
              +FEL++     W P  P
Sbjct:   208 RMFELVQKHPSHWPPFVP 225

GO:0005737 "cytoplasm" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

FB|FBgn0031298 Atg4 "Autophagy-specific gene 4" [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 33/79 (41%), Positives = 47/79 (59%)

Query:     8 VYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQ 67
             V  K   +E+  D TYH   A+RL+   MDPS+AVCFLCKT + F SL ++++ E+    
Sbjct:   281 VAQKTAAAEQDYDETYHQKHAARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLC 340

Query:    68 QP-LFELIEDPIEDWTPTQ 85
              P LFE+ +    DW  T+
Sbjct:   341 SPALFEISQTRAVDWDTTE 359

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0010506 "regulation of autophagy" evidence=IMP

UNIPROTKB|E2RLY1 ATG4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 29/68 (42%), Positives = 43/68 (63%)

Query:    20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
             D T+HC Q+  R++IL++DPS+A+ F CK E DF S CS ++ E+  E   +FEL++   
Sbjct:   298 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDSWCSLVQKEILKENLRMFELVQKHP 357

Query:    79 EDWTPTQP 86
               W P  P
Sbjct:   358 SHWPPFVP 365

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q6PZ05 ATG4A "Cysteine protease ATG4A" [Bos taurus (taxid:9913)]

 Score = 155 (59.6 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 31/78 (39%), Positives = 46/78 (58%)

Query:    10 DKEQDSEKKLDSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ 68
             D E++     D T+HC Q   R++IL++DPS+A+ F CK E DF S CS ++ E+  E  
Sbjct:   288 DTEENGTAD-DQTFHCLQPPQRMNILNLDPSVALGFFCKEEKDFDSWCSLVQKEILKENL 346

Query:    69 PLFELIEDPIEDWTPTQP 86
              +FEL++     W P  P
Sbjct:   347 RMFELVQKHPSHWPPFVP 364

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|A6QLH1 ATG4A "ATG4 autophagy related 4 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 29/68 (42%), Positives = 42/68 (61%)

Query:    20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
             D T+HC Q   R++IL++DPS+A+ F CK E DF S CS ++ E+  E   +FEL++   
Sbjct:   297 DQTFHCLQPPQRMNILNLDPSVALGFFCKEEKDFDSWCSLVQKEILKENLRMFELVQKHP 356

Query:    79 EDWTPTQP 86
               W P  P
Sbjct:   357 SHWPPFVP 364

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q8WYN0 ATG4A "Cysteine protease ATG4A" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 30/78 (38%), Positives = 47/78 (60%)

Query:    10 DKEQDSEKKLDSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ 68
             D E++     D T+HC Q+  R++IL++DPS+A+ F CK E DF + CS ++ E+  E  
Sbjct:   288 DTEENGTVN-DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENL 346

Query:    69 PLFELIEDPIEDWTPTQP 86
              +FEL++     W P  P
Sbjct:   347 RMFELVQKHPSHWPPFVP 364

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006508 "proteolysis" evidence=IDA

GO:0008234 "cysteine-type peptidase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|K7GPU1 LOC100156732 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query:    20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
             D T+HC Q   R++IL++DPS+A+ F C+ E DF S CS ++ E+  E   +FEL++   
Sbjct:   200 DQTFHCLQPPQRMNILNLDPSVALGFFCQEEKDFDSWCSLVQKEILKENLRMFELVQKHP 259

Query:    79 EDWTPTQP 86
               W P  P
Sbjct:   260 PHWPPFVP 267

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|K7GK67 LOC100156732 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 149 (57.5 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 28/68 (41%), Positives = 42/68 (61%)

Query:    20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
             D T+HC Q   R++IL++DPS+A+ F C+ E DF S CS ++ E+  E   +FEL++   
Sbjct:   224 DQTFHCLQPPQRMNILNLDPSVALGFFCQEEKDFDSWCSLVQKEILKENLRMFELVQKHP 283

Query:    79 EDWTPTQP 86
               W P  P
Sbjct:   284 PHWPPFVP 291

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5ZIW7 ATG4A "Cysteine protease ATG4A" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 6.1e-09, P = 6.1e-09
 Identities = 29/79 (36%), Positives = 47/79 (59%)

Query:    10 DKEQDSEKKLDSTYHCPQAS-RLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQ 68
             D E++     D ++HC QA  R+ I+++DPS+A+ F CK E DF + CS ++ E+  +Q 
Sbjct:   271 DSEENGTVD-DQSFHCQQAPHRMKIMNLDPSVALGFFCKEECDFDNWCSLVQKEILKQQS 329

Query:    69 -PLFELIEDPIEDWTPTQP 86
               +FEL++     W P  P
Sbjct:   330 LRMFELVQKHPPHWPPFIP 348

GO:0006508 "proteolysis" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1PAF7 ATG4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 138 (53.6 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 38/106 (35%), Positives = 51/106 (48%)

Query:    20 DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIEDP 77
             D ++HC    SR+ I  +DPSIAV F CKTE DF   C Q+R   L     P+FEL+E  
Sbjct:   222 DESFHCQHPPSRMSIGELDPSIAVGFFCKTEGDFDDWCQQVRQLSLLGGALPMFELVEQ- 280

Query:    78 IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                      +PS+L      + S       R+    +  D+DFE L
Sbjct:   281 ---------QPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEIL 317

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	124
pfam03416	277	pfam03416, Peptidase_C54, Peptidase family C54	2e-14

>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 10  DKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQI 59
              Q      D TYHC    +LH   MDPS+A+ FLC+ E+DF + C ++
Sbjct: 227 TVNQKGFPVDDETYHCRSLRKLHFSDMDPSLAIGFLCRDEDDFDNWCERL 276

Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG2674|consensus	409		99.84
PF03416	278	Peptidase_C54: Peptidase family C54 This family be	99.49

>KOG2674|consensus

Probab=99.84  E-value=1.6e-21  Score=166.80  Aligned_cols=74  Identities=32%  Similarity=0.695  Sum_probs=60.6

Q ss_pred             ccCCCCCCCcccccCccccCCCccccccccCCccceeecccCChHHHHHHHHHHHHhhc-CCCCCcEEEecCCCCCCCC
Q psy10473          6 IGVYDKEQDSEKKLDSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFELIEDPIEDWTP   83 (124)
Q Consensus         6 ~~~~~~~~~~~~~~d~SyHC~~prrm~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~-~~~~PLF~v~e~rp~~~~~   83 (124)
                      |+|.....++    ++||||+.||||+|.+|||||||||||++++||++||.+++++++ ..+.++|.+...+|.||..
T Consensus       301 V~vs~~~~~~----~esfHC~~~~km~f~~mDPS~alGF~c~~~~dF~~~c~~l~k~~~~s~~~~~~~lf~~~~~h~~~  375 (409)
T KOG2674|consen  301 VEVSKAKDVP----DETFHCQSLRKMAFEDMDPSLALGFYCKDEDDFDNLCSELKKSLSLSSALEMFELFTRVPSHWET  375 (409)
T ss_pred             ccccccCCCC----ccccccCchhhcchhhcCcceEEEEEecCHHHHHHHHHHHHHHhccccCcccccceecccccccc
Confidence            3444445566    889999999999999999999999999999999999999999776 5554556666677777753

>PF03416 Peptidase_C54: Peptidase family C54 This family belongs to family C54 of the peptidase classification

Probab=99.49  E-value=1.4e-14  Score=118.18  Aligned_cols=41  Identities=41%  Similarity=0.993  Sum_probs=37.2

Q ss_pred             CccccCCCccccccccCCccceeecccCChHHHHHHHHHHH
Q psy10473         20 DSTYHCPQASRLHILHMDPSIAVCFLCKTENDFASLCSQIR   60 (124)
Q Consensus        20 d~SyHC~~prrm~i~~mDPS~alGFyC~te~DFedl~~~i~   60 (124)
                      ++||||..+++|++++|||||||||||+|++||++||++|+
T Consensus       238 ~~s~h~~~~~~~~~~~lDPS~~lgF~~~~~~d~~~~~~~i~  278 (278)
T PF03416_consen  238 DSSYHCSSPRKMPISKLDPSMALGFYCRNEEDFEDFCKRIQ  278 (278)
T ss_dssp             -GGGC-SSSEEEEGGGS-SEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCceecCCcccCcHhhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence            48999999999999999999999999999999999999986

; InterPro: IPR005078 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C54 (Aut2 peptidase family, clan CA), which are a group of proteins of unknown function.; PDB: 2CY7_A 2ZZP_A 2D1I_B 2Z0E_A 2Z0D_A 2P82_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2p82_A	355	Cysteine Protease Atg4a Length = 355		4e-10
2d1i_A	398	Structure Of Human Atg4b Length = 398		1e-08
2cy7_A	396	The Crystal Structure Of Human Atg4b Length = 396		1e-08
2zzp_A	357	The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-1		8e-08
2z0d_A	357	The Crystal Structure Of Human Atg4b- Lc3(1-120) Co		8e-08

>pdb|2P82|A Chain A, Cysteine Protease Atg4a Length = 355

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q+  R++IL++DPS+A+ F CK E DF + CS ++ E+  E   +FEL++   
Sbjct: 293 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 352
Query: 79  EDW 81
             W
Sbjct: 353 SHW 355

>pdb|2D1I|A Chain A, Structure Of Human Atg4b Length = 398

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIEDP 77
           D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+FEL+E  
Sbjct: 301 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ- 359
Query: 78  IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                    +PS+L      + S       R+    +  D+DFE L
Sbjct: 360 ---------QPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEIL 396

>pdb|2CY7|A Chain A, The Crystal Structure Of Human Atg4b Length = 396

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIEDP 77
           D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+FEL+E  
Sbjct: 299 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ- 357
Query: 78  IEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
                    +PS+L      + S       R+    +  D+DFE L
Sbjct: 358 ---------QPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEIL 394

>pdb|2ZZP|A Chain A, The Crystal Structure Of Human Atg4b(C74s)- Lc3(1-124) Complex Length = 357

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIE 75
           D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+FEL+E
Sbjct: 299 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVE 356

>pdb|2Z0D|A Chain A, The Crystal Structure Of Human Atg4b- Lc3(1-120) Complex Length = 357

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 20  DSTYHCPQA-SRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLFELIE 75
           D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+FEL+E
Sbjct: 299 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVE 356

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	1e-15
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	9e-15

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A Length = 396

 Score = 70.3 bits (171), Expect = 1e-15
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 12/112 (10%)

Query: 14  DSEKKLDSTYHCPQAS-RLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRP-EQQPLF 71
           D     D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++         P+F
Sbjct: 293 DGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMF 352

Query: 72  ELIEDPIEDWTPTQPRPSNLGGTSSPSCSSMRRQPRRVSGVGEGSDDDFEFL 123
           EL+E           +PS+L      + S       R+    +  D+DFE L
Sbjct: 353 ELVEQ----------QPSHLACPDVLNLSLDSSDVERLERFFDSEDEDFEIL 394

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22 Length = 355

 Score = 68.0 bits (165), Expect = 9e-15
 Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 13  QDSEKKLDSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLF 71
           +++    D T+HC Q   R++IL++DPS+A+ F CK E DF + CS ++ E+  E   +F
Sbjct: 286 EENGTVNDQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMF 345

Query: 72  ELIEDPIEDW 81
           EL++     W
Sbjct: 346 ELVQKHPSHW 355

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2cy7_A	396	Cysteine protease APG4B; papain-like fold, autopha	99.94
2p82_A	355	Cysteine protease ATG4A; autophagy, hydrolase, pro	99.86

>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase; 1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A 2z0d_A 2z0e_A

Probab=99.94  E-value=1.3e-27  Score=202.36  Aligned_cols=95  Identities=36%  Similarity=0.627  Sum_probs=59.5

Q ss_pred             CccccCCC-ccccccccCCccceeecccCChHHHHHHHHHHHHhhc-CCCCCcEEEecCCCCCCCCCCCCCCCCCCCCCC
Q psy10473         20 DSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFELIEDPIEDWTPTQPRPSNLGGTSSP   97 (124)
Q Consensus        20 d~SyHC~~-prrm~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~-~~~~PLF~v~e~rp~~~~~~~~~~~~~~~~~s~   97 (124)
                      ++||||.+ +|||++++|||||||||||+|++||++||++++++.. ..++|||+|++++|++|+ .++.+. +..+.+ 
T Consensus       299 ~~s~hc~~~~~~m~~~~mDPS~~lGFyc~~~~Df~d~~~~~~~~~~~~~~~plF~v~~~~p~~~~-~~~~~~-~~~~~~-  375 (396)
T 2cy7_A          299 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQQPSHLA-CPDVLN-LSLDSS-  375 (396)
T ss_dssp             CGGGBCCSCCEEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHHHC----CCSEEESCCC-------CCCC-CCCCHH-
T ss_pred             CcceeecCcccccchhhcCCceEEEEEECCHHHHHHHHHHHHHHhccCCCCceEEeeccCCCcCC-CCcccc-CCCccc-
Confidence            78999998 5799999999999999999999999999999999877 678999999999999997 233333 344333 


Q ss_pred             CCCccCCCccccCCCCCCCCCcceecC
Q psy10473         98 SCSSMRRQPRRVSGVGEGSDDDFEFLG  124 (124)
Q Consensus        98 ~~~~~~~~~~~~e~~~d~sdeeFEil~  124 (124)
                         +    .+.+++++|++|||||||+
T Consensus       376 ---~----~~~~~~~~~~~~~~f~~~~  395 (396)
T 2cy7_A          376 ---D----VERLERFFDSEDEDFEILS  395 (396)
T ss_dssp             ---H----HHHC---------------
T ss_pred             ---c----hhhhhhccCCccccccccc
Confidence               4    5667899999999999986

>2p82_A Cysteine protease ATG4A; autophagy, hydrolase, protein transport, thiol Pro transport, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: d.3.1.22

Probab=99.86  E-value=2.2e-22  Score=168.28  Aligned_cols=62  Identities=42%  Similarity=0.895  Sum_probs=60.5

Q ss_pred             CccccCCC-ccccccccCCccceeecccCChHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCC
Q psy10473         20 DSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDW   81 (124)
Q Consensus        20 d~SyHC~~-prrm~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~~~~~PLF~v~e~rp~~~   81 (124)
                      ++||||++ ||||++++|||||||||||+|++||++||+++++++...++|||+|+++||+||
T Consensus       293 ~~sfhc~~~~~~m~~~~lDPS~~lGF~c~~~~df~d~~~~i~~~~~~~~~plF~v~~~~p~~~  355 (355)
T 2p82_A          293 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHPSHW  355 (355)
T ss_dssp             CGGGBCCSSCEEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHTTTSSSCSSEEESSCCCCC
T ss_pred             CCceeeCCCcCcCchhhcCcceEEEEEECCHHHHHHHHHHHHHHhccCCCCcEEEeccCCCCC
Confidence            88999999 999999999999999999999999999999999988789999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	124
d2p82a1	334	d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human	5e-18
d2z0da1	350	d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human	9e-16

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]} Length = 334

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 5e-18
 Identities = 26/63 (41%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 20  DSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPI 78
           D T+HC Q   R++IL++DPS+A+ F CK E DF + CS ++ E+  E   +FEL++   
Sbjct: 272 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHP 331

Query: 79  EDW 81
             W
Sbjct: 332 SHW 334

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 9e-16
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 14  DSEKKLDSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRA-ELRPEQQPLF 71
           D     D ++HC     R+ I  +DPSIAV F CKTE+DF   C Q++   L     P+F
Sbjct: 286 DGCFIPDESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMF 345

Query: 72  ELIE 75
           EL+E
Sbjct: 346 ELVE 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	124
d2p82a1	334	Cysteine protease ATG4A {Human (Homo sapiens) [Tax	99.82
d2z0da1	350	Cysteine protease ATG4B {Human (Homo sapiens) [Tax	99.74

>d2p82a1 d.3.1.22 (A:26-359) Cysteine protease ATG4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.3e-21  Score=156.03  Aligned_cols=62  Identities=40%  Similarity=0.881  Sum_probs=58.6

Q ss_pred             CccccCC-CccccccccCCccceeecccCChHHHHHHHHHHHHhhcCCCCCcEEEecCCCCCC
Q psy10473         20 DSTYHCP-QASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELRPEQQPLFELIEDPIEDW   81 (124)
Q Consensus        20 d~SyHC~-~prrm~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~~~~~PLF~v~e~rp~~~   81 (124)
                      +.||||. .+|||++++|||||||||||+|++||++||++|++++...+.|||+|++++|+||
T Consensus       272 ~~s~h~~~~~~~m~~~~lDPS~~lgF~~~~~~d~~~~~~~i~~l~~~~~~plF~v~~~~P~~~  334 (334)
T d2p82a1         272 DQTFHCLQSPQRMNILNLDPSVALGFFCKEEKDFDNWCSLVQKEILKENLRMFELVQKHPSHW  334 (334)
T ss_dssp             CGGGBCCSSCEEEEGGGSCSEEEEEEEESSHHHHHHHHHHHHHHTTTSSSCSSEEESSCCCCC
T ss_pred             ccceecCCccccCchhhcCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCeEEecCCCCCCC
Confidence            7899994 5899999999999999999999999999999999987777899999999999999

>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Autophagin-like
domain: Cysteine protease ATG4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5e-19  Score=145.51  Aligned_cols=57  Identities=44%  Similarity=0.878  Sum_probs=49.7

Q ss_pred             CccccCCC-ccccccccCCccceeecccCChHHHHHHHHHHHHhhc-CCCCCcEEEecC
Q psy10473         20 DSTYHCPQ-ASRLHILHMDPSIAVCFLCKTENDFASLCSQIRAELR-PEQQPLFELIED   76 (124)
Q Consensus        20 d~SyHC~~-prrm~i~~mDPS~alGFyC~te~DFedl~~~i~~~l~-~~~~PLF~v~e~   76 (124)
                      ++||||.+ ++||++++|||||||||||+|++||++||++|+++.+ +.++|||+|+++
T Consensus       292 ~~S~hc~~~~~~~~~~~lDPSm~lGF~~~~~~d~~~~~~~i~~l~~~~~~~plFev~e~  350 (350)
T d2z0da1         292 DESFHCQHPPCRMSIAELDPSIAVGFFCKTEDDFNDWCQQVKKLSLLGGALPMFELVEQ  350 (350)
T ss_dssp             CGGGSCCSSCEEEEGGGCCSEEEEEEEESSHHHHHHHHHHHHHC-----CCCSSEEECC
T ss_pred             ccceecCCCcCcCChhhcCCCeEEEEEECCHHHHHHHHHHHHHHhcccCCCCcEEEeeC
Confidence            78999987 5689999999999999999999999999999999777 789999999874